-- dump date 20140619_235029 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 312153000001 SEQ_END SEQ_END NC_009379.1 2159490 2159490 DR NC_009379.1; contig end 2159490..2159490 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 YP_001154787.1 CDS Pnuc_0001 NC_009379.1 33 1460 D KEGG: bpm:BURPS1710b_0301 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA C-terminal domain; Chromosomal replication initiator, DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA 33..1460 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053967 YP_001154788.1 CDS Pnuc_0002 NC_009379.1 1724 2839 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1724..2839 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052757 YP_001154789.1 CDS Pnuc_0003 NC_009379.1 2851 5349 D KEGG: reu:Reut_A0003 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 2851..5349 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052081 YP_001154790.1 CDS Pnuc_0004 NC_009379.1 5352 5846 D PFAM: nuclear protein SET; KEGG: rme:Rmet_3537 nuclear protein SET; nuclear protein SET 5352..5846 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051985 YP_001154791.1 CDS Pnuc_0005 NC_009379.1 5855 6079 D KEGG: rso:RSc3357 hypothetical protein; hypothetical protein 5855..6079 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052996 YP_001154792.1 CDS Pnuc_0006 NC_009379.1 6181 6942 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_B0501 ABC-type transporter, ATPase component: HAAT family; ABC transporter 6181..6942 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053041 YP_001154793.1 CDS Pnuc_0007 NC_009379.1 6939 7643 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA3429 ABC transporter subunit; ABC transporter 6939..7643 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053676 YP_001154794.1 CDS Pnuc_0008 NC_009379.1 7672 8874 D KEGG: reu:Reut_A3369 extracellular ligand-binding receptor; extracellular ligand-binding receptor 7672..8874 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053435 YP_001154795.1 CDS Pnuc_0009 NC_009379.1 8878 9762 D PFAM: inner-membrane translocator; KEGG: reh:H16_A3659 ABC-type transporter, permease component; inner-membrane translocator 8878..9762 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053022 YP_001154796.1 CDS Pnuc_0010 NC_009379.1 9759 10715 D PFAM: inner-membrane translocator; KEGG: reh:H16_A3658 ABC-type transporter, permease component; inner-membrane translocator 9759..10715 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052776 YP_001154797.1 CDS Pnuc_0011 NC_009379.1 10721 11734 R PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0232 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(10721..11734) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052483 YP_001154798.1 CDS Pnuc_0012 NC_009379.1 11742 12512 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ajs:Ajs_0231 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(11742..12512) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052213 YP_001154799.1 CDS Pnuc_0013 NC_009379.1 12512 13759 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ajs:Ajs_0230 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase complement(12512..13759) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052181 YP_001154800.1 CDS Pnuc_0014 NC_009379.1 13784 14575 D PFAM: protein of unknown function DUF81; KEGG: reu:Reut_A3365 protein of unknown function DUF81; hypothetical protein 13784..14575 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052388 YP_001154801.1 CDS Pnuc_0015 NC_009379.1 14682 16601 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 14682..16601 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052185 YP_001154802.1 CDS Pnuc_0016 NC_009379.1 16598 17266 D TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: azo:azo0142 probable methyltransferase GidB; methyltransferase GidB 16598..17266 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052225 YP_001154803.1 CDS Pnuc_0017 NC_009379.1 17284 18054 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rso:RSc3326 chromosome partitioning protein ParA; cobyrinic acid a,c-diamide synthase 17284..18054 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052285 YP_001154804.1 CDS Pnuc_0018 NC_009379.1 18075 18965 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: rso:RSc3325 chromosome partitioning protein ParB; parB-like partition protein 18075..18965 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052416 YP_001154805.1 CDS Pnuc_0019 NC_009379.1 19034 19528 D KEGG: bps:BPSL3403 ATP synthase I AtpI; ATP synthase I AtpI 19034..19528 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052397 YP_001154806.1 CDS Pnuc_0020 NC_009379.1 19568 20443 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 19568..20443 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052537 YP_001154807.1 CDS Pnuc_0021 NC_009379.1 20489 20755 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 20489..20755 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052429 YP_001154808.1 CDS Pnuc_0022 NC_009379.1 20819 21289 D TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: rme:Rmet_3498 ATP synthase F0, B subunit; ATP synthase F0 subunit B 20819..21289 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052492 YP_001154809.1 CDS Pnuc_0023 NC_009379.1 21291 21827 D TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: rso:RSc3320 probable ATP synthase delta chain protein; ATP synthase F1 subunit delta 21291..21827 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052539 YP_001154810.1 CDS Pnuc_0024 NC_009379.1 21873 23414 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 21873..23414 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052551 YP_001154811.1 CDS Pnuc_0025 NC_009379.1 23432 24301 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 23432..24301 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052630 YP_001154812.1 CDS Pnuc_0026 NC_009379.1 24357 25757 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 24357..25757 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052711 YP_001154813.1 CDS atpC NC_009379.1 25779 26195 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 25779..26195 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052719 YP_001154814.1 CDS Pnuc_0028 NC_009379.1 26211 27320 D KEGG: rme:Rmet_3491 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 26211..27320 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052731 YP_001154815.1 CDS Pnuc_0029 NC_009379.1 27590 29719 D KEGG: bpa:BPP4131 primosomal protein; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; primosomal protein N' 27590..29719 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052738 YP_001154816.1 CDS Pnuc_0030 NC_009379.1 29729 30142 R TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: rme:Rmet_3481 glycine cleavage system H protein; glycine cleavage system H protein complement(29729..30142) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052761 YP_001154817.1 CDS Pnuc_0031 NC_009379.1 30204 30848 D PFAM: beta-lactamase domain protein; KEGG: reu:Reut_A3268 beta-lactamase-like; beta-lactamase domain-containing protein 30204..30848 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052764 YP_001154818.1 CDS Pnuc_0032 NC_009379.1 31085 32125 R PFAM: fatty acid desaturase; KEGG: bps:BPSL2382 fatty acid desaturase; fatty acid desaturase complement(31085..32125) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052069 YP_001154819.1 CDS Pnuc_0033 NC_009379.1 32491 32994 D PFAM: cytochrome c, class I; KEGG: reu:Reut_A3322 cytochrome c, class I; cytochrome c, class I 32491..32994 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052024 YP_001154820.1 CDS Pnuc_0034 NC_009379.1 33037 33933 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rso:RSc3266 hypothetical transmembrane protein; uroporphyrin-III C/tetrapyrrole methyltransferase complement(33037..33933) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052914 YP_001154821.1 CDS Pnuc_0035 NC_009379.1 34010 34642 D TIGRFAM: phosphoheptose isomerase; KEGG: ngo:NGO1986 phosphoheptose isomerase; phosphoheptose isomerase 34010..34642 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052930 YP_001154822.1 CDS Pnuc_0036 NC_009379.1 34672 35322 D PFAM: transport-associated; KEGG: rso:RSc3264 hypothetical signal peptide protein; transport-associated 34672..35322 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052987 YP_001154823.1 CDS Pnuc_0037 NC_009379.1 35340 35693 D PFAM: cytochrome c, class I; KEGG: rso:RSc3260 probable cytochrome c transmembrane protein; cytochrome c, class I 35340..35693 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053021 YP_001154824.1 CDS Pnuc_0038 NC_009379.1 35690 36346 R PFAM: GCN5-related N-acetyltransferase; KEGG: bps:BPSL3237 hypothetical protein; N-acetyltransferase GCN5 complement(35690..36346) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053034 YP_001154825.1 CDS Pnuc_0039 NC_009379.1 42390 43580 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 42390..43580 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051956 YP_001154826.1 CDS Pnuc_0040 NC_009379.1 43686 44063 D TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: bps:BPSL3227 preprotein translocase SecE subunit; Preprotein translocase subunit SecE 43686..44063 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052000 YP_001154827.1 CDS Pnuc_0041 NC_009379.1 44073 44645 D KEGG: reh:H16_A3502 transcription antitermination protein; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; NusG antitermination factor 44073..44645 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053835 YP_001154828.1 CDS rplK NC_009379.1 44813 45244 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 44813..45244 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052717 YP_001154829.1 CDS rplA NC_009379.1 45247 45948 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 45247..45948 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053558 YP_001154830.1 CDS rplJ NC_009379.1 46186 46833 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 46186..46833 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052723 YP_001154831.1 CDS rplL NC_009379.1 46870 47244 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 46870..47244 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052410 YP_001154832.1 CDS rpoB NC_009379.1 47471 51571 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 47471..51571 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053127 YP_001154833.1 CDS Pnuc_0047 NC_009379.1 51573 55835 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 51573..55835 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053712 YP_001154834.1 CDS rpsL NC_009379.1 56013 56393 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 56013..56393 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053681 YP_001154835.1 CDS Pnuc_0049 NC_009379.1 56543 57013 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 56543..57013 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053316 YP_001154836.1 CDS Pnuc_0050 NC_009379.1 57041 59143 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 57041..59143 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052616 YP_001154837.1 CDS Pnuc_0051 NC_009379.1 59194 60384 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 59194..60384 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052840 YP_001154838.1 CDS rpsJ NC_009379.1 60518 60829 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 60518..60829 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053003 YP_001154839.1 CDS rplC NC_009379.1 61026 61682 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 61026..61682 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052786 YP_001154840.1 CDS rplD NC_009379.1 61694 62314 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 61694..62314 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051914 YP_001154841.1 CDS rplW NC_009379.1 62311 62625 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 62311..62625 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053098 YP_001154842.1 CDS rplB NC_009379.1 62628 63458 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 62628..63458 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053877 YP_001154843.1 CDS rpsS NC_009379.1 63478 63756 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 63478..63756 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053853 YP_001154844.1 CDS rplV NC_009379.1 63767 64096 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 63767..64096 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053830 YP_001154845.1 CDS Pnuc_0059 NC_009379.1 64105 64932 D KEGG: rfr:Rfer_3789 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3-C-terminal domain protein; KH, type 2 domain protein; Ribosomal protein S3, N-terminal domain; SMART: KH domain protein; 30S ribosomal protein S3 64105..64932 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053810 YP_001154846.1 CDS rplP NC_009379.1 64935 65348 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 64935..65348 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053801 YP_001154847.1 CDS Pnuc_0061 NC_009379.1 65345 65557 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 65345..65557 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053720 YP_001154848.1 CDS rpsQ NC_009379.1 65570 65839 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 65570..65839 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053701 YP_001154849.1 CDS rplN NC_009379.1 66023 66391 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 66023..66391 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053687 YP_001154850.1 CDS rplX NC_009379.1 66401 66709 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 66401..66709 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053535 YP_001154851.1 CDS Pnuc_0065 NC_009379.1 66726 67268 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 66726..67268 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053291 YP_001154852.1 CDS rpsN NC_009379.1 67278 67583 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 67278..67583 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053134 YP_001154853.1 CDS rpsH NC_009379.1 67608 68003 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 67608..68003 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053124 YP_001154854.1 CDS rplF NC_009379.1 68014 68547 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 68014..68547 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052933 YP_001154855.1 CDS rplR NC_009379.1 68561 68914 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 68561..68914 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052913 YP_001154856.1 CDS rpsE NC_009379.1 68933 69451 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 68933..69451 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051997 YP_001154857.1 CDS rpmD NC_009379.1 69476 69664 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 69476..69664 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052751 YP_001154858.1 CDS rplO NC_009379.1 69692 70132 D late assembly protein; 50S ribosomal protein L15 69692..70132 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052569 YP_001154859.1 CDS Pnuc_0073 NC_009379.1 70151 71488 D TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: rso:RSc2999 probable preprotein translocase secy (membrane subunit) transmembrane; preprotein translocase subunit SecY 70151..71488 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052466 YP_001154860.1 CDS infA NC_009379.1 71493 71711 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 71493..71711 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052382 YP_001154861.1 CDS rpsM NC_009379.1 71888 72253 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 71888..72253 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052384 YP_001154862.1 CDS Pnuc_0076 NC_009379.1 72272 72679 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 72272..72679 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053658 YP_001154863.1 CDS Pnuc_0077 NC_009379.1 72798 73421 D PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: reu:Reut_A3155 ribosomal protein S4, bacterial and organelle form; 30S ribosomal protein S4 72798..73421 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053447 YP_001154864.1 CDS Pnuc_0078 NC_009379.1 73445 74425 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 73445..74425 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053419 YP_001154865.1 CDS rplQ NC_009379.1 74442 74831 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 74442..74831 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053297 YP_001154866.1 CDS Pnuc_0080 NC_009379.1 74907 75257 D PFAM: CutA1 divalent ion tolerance protein; KEGG: mca:MCA1040 periplasmic divalent cation tolerance protein; CutA1 divalent ion tolerance protein 74907..75257 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052909 YP_001154867.1 CDS Pnuc_0081 NC_009379.1 75254 76930 D PFAM: cytochrome c biogenesis protein, transmembrane region; Thioredoxin domain; KEGG: rme:Rmet_3288 cytochrome c biogenesis protein, transmembrane region; protein-disulfide reductase 75254..76930 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052737 YP_001154868.1 CDS Pnuc_0082 NC_009379.1 76935 77429 D PFAM: MOSC domain containing protein; KEGG: fal:FRAAL1642 hypothetical protein; MOSC domain; MOSC domain-containing protein 76935..77429 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052458 YP_001154869.1 CDS Pnuc_0083 NC_009379.1 77418 78443 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(77418..78443) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052432 YP_001154870.1 CDS engB NC_009379.1 78421 79086 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(78421..79086) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053728 YP_001154871.1 CDS Pnuc_0085 NC_009379.1 79202 79942 D KEGG: reh:H16_A3451 cytochrome c553; cytochrome c553-like protein 79202..79942 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053688 YP_001154872.1 CDS Pnuc_0086 NC_009379.1 80034 81332 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: reh:H16_A3443 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(80034..81332) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054001 YP_001154873.1 CDS Pnuc_0087 NC_009379.1 81571 81951 D PFAM: Frataxin family protein; KEGG: bxe:Bxe_A0353 hypothetical protein; frataxin family protein 81571..81951 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053582 YP_001154874.1 CDS Pnuc_0088 NC_009379.1 81968 83053 R PFAM: 3-dehydroquinate synthase; KEGG: reh:H16_A3434 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(81968..83053) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053557 YP_001154875.1 CDS Pnuc_0089 NC_009379.1 83059 83544 R PFAM: shikimate kinase; KEGG: bur:Bcep18194_A3489 shikimate kinase; shikimate kinase complement(83059..83544) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053448 YP_001154876.1 CDS Pnuc_0090 NC_009379.1 83596 84657 R PFAM: type II and III secretion system protein; Secretin/TonB, short N-terminal domain; KEGG: net:Neut_1803 type IV pilus secretin PilQ; type II and III secretion system protein complement(83596..84657) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053440 YP_001154877.1 CDS Pnuc_0091 NC_009379.1 84714 85406 R hypothetical protein complement(84714..85406) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052112 YP_001154878.1 CDS Pnuc_0092 NC_009379.1 85548 87884 D KEGG: rme:Rmet_3274 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein 85548..87884 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052101 YP_001154879.1 CDS Pnuc_0093 NC_009379.1 87897 88601 D PFAM: protein of unknown function DUF1568; KEGG: aav:Aave_1007 protein of unknown function DUF1568; hypothetical protein 87897..88601 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052352 YP_001154880.1 CDS Pnuc_0094 NC_009379.1 88797 93542 D PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: reh:H16_A3431 glutamate synthase [NADPH], glutamate synthase amidotransferase domain; glutamate synthase 88797..93542 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053369 YP_001154881.1 CDS Pnuc_0095 NC_009379.1 93581 95044 D TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bte:BTH_I3013 glutamate synthase, small subunit; glutamate synthase NADH/NADPH small subunit 93581..95044 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053323 YP_001154882.1 CDS Pnuc_0096 NC_009379.1 95055 95903 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2962 probable ATP-binding ABC transporter protein; ABC transporter 95055..95903 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053295 YP_001154883.1 CDS Pnuc_0097 NC_009379.1 95903 96700 D PFAM: protein of unknown function DUF140; KEGG: reh:H16_A3426 ABC-type transporter, permease component involved in toluene tolerance; hypothetical protein 95903..96700 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053159 YP_001154884.1 CDS Pnuc_0098 NC_009379.1 96722 97204 D PFAM: Mammalian cell entry related domain protein; KEGG: reu:Reut_A3120 mammalian cell entry related; hypothetical protein 96722..97204 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053398 YP_001154885.1 CDS Pnuc_0099 NC_009379.1 97204 97962 D PFAM: VacJ family lipoprotein; KEGG: pna:Pnap_0688 VacJ family lipoprotein; VacJ family lipoprotein 97204..97962 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053279 YP_001154886.1 CDS Pnuc_0100 NC_009379.1 98024 98656 D PFAM: toluene tolerance family protein; KEGG: reu:Reut_A3118 toluene tolerance; toluene tolerance family protein 98024..98656 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053062 YP_001154887.1 CDS Pnuc_0101 NC_009379.1 98670 98927 D KEGG: rme:Rmet_3254 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS 98670..98927 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053351 YP_001154888.1 CDS Pnuc_0102 NC_009379.1 98932 99684 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_3396 ABC transporter related; ABC transporter 98932..99684 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053360 YP_001154889.1 CDS Pnuc_0103 NC_009379.1 99681 100469 D PFAM: ABC-2 type transporter; KEGG: reh:H16_A3420 ABC-2-type transporter, permease component; ABC-2 type transporter 99681..100469 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053086 YP_001154890.1 CDS Pnuc_0104 NC_009379.1 100490 100738 D PFAM: BolA family protein; KEGG: reh:H16_A3419 predicted transcriptional regulator, BolA superfamily; BolA family protein 100490..100738 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052819 YP_001154891.1 CDS Pnuc_0105 NC_009379.1 100781 102055 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 100781..102055 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052334 YP_001154892.1 CDS hisG NC_009379.1 102076 102702 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 102076..102702 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052820 YP_001154893.1 CDS Pnuc_0107 NC_009379.1 102737 104059 D PFAM: histidinol dehydrogenase; KEGG: reu:Reut_A3111 histidinol dehydrogenase; histidinol dehydrogenase 102737..104059 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053363 YP_001154894.1 CDS Pnuc_0108 NC_009379.1 104079 105146 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(104079..105146) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052306 YP_001154895.1 CDS hisB NC_009379.1 105260 105847 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 105260..105847 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052584 YP_001154896.1 CDS hisH NC_009379.1 105895 106557 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 105895..106557 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053364 YP_001154897.1 CDS Pnuc_0111 NC_009379.1 106577 107338 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 106577..107338 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053361 YP_001154898.1 CDS Pnuc_0112 NC_009379.1 107338 108096 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 107338..108096 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052890 YP_001154899.1 CDS Pnuc_0113 NC_009379.1 108139 108552 D PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: eba:ebB39 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 108139..108552 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051895 YP_001154900.1 CDS Pnuc_0114 NC_009379.1 108585 108986 D PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: bxe:Bxe_A0406 phosphoribosyl-ATP pyrophosphohydrolase HisE; phosphoribosyl-ATP pyrophosphohydrolase 108585..108986 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053193 YP_001154901.1 CDS Pnuc_0115 NC_009379.1 109013 109369 D PFAM: histidine triad (HIT) protein; KEGG: vei:Veis_0702 histidine triad (HIT) protein; histidine triad (HIT) protein 109013..109369 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053064 YP_001154902.1 CDS tatA NC_009379.1 109386 109607 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase A 109386..109607 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053591 YP_001154903.1 CDS tatB NC_009379.1 109645 110121 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: reu:Reut_A3099 twin-arginine translocation protein TatB; sec-independent translocase 109645..110121 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052601 YP_001154904.1 CDS Pnuc_0118 NC_009379.1 110140 110916 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: bxe:Bxe_A0411 twin-arginine translocation protein, TatC; Sec-independent protein translocase subunit TatC 110140..110916 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052494 YP_001154905.1 CDS Pnuc_0120 NC_009379.1 112570 113844 D PFAM: porin, Gram-negative type; KEGG: pna:Pnap_0650 porin, gram-negative type; porin 112570..113844 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051919 YP_001154906.1 CDS Pnuc_0121 NC_009379.1 113982 116180 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1840 TPR repeat-containing protein; hypothetical protein 113982..116180 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053211 YP_001154907.1 CDS Pnuc_0122 NC_009379.1 116170 118152 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 TPR repeat-containing protein; hypothetical protein complement(116170..118152) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051975 YP_001154908.1 CDS Pnuc_0123 NC_009379.1 118149 119321 R PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rme:Rmet_3233 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap complement(118149..119321) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053923 YP_001154909.1 CDS Pnuc_0124 NC_009379.1 119344 119766 R TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: ajs:Ajs_0788 large conductance mechanosensitive channel protein; large conductance mechanosensitive channel protein complement(119344..119766) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052733 YP_001154910.1 CDS Pnuc_0125 NC_009379.1 119904 120506 D KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 119904..120506 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053794 YP_001154911.1 CDS Pnuc_0126 NC_009379.1 120517 121917 D PFAM: Cytochrome b/b6, N-terminal domain; KEGG: rso:RSc2928 cytochrome B subunit transmembrane protein; cytochrome b/b6 domain-containing protein 120517..121917 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053982 YP_001154912.1 CDS Pnuc_0127 NC_009379.1 121951 122724 D PFAM: cytochrome c1; KEGG: reh:H16_A3396 ubiquinol-cytochrome c reductase, cytochrome c1; cytochrome c1 121951..122724 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054013 YP_001154913.1 CDS Pnuc_0128 NC_009379.1 122834 123445 D PFAM: Glutathione S-transferase, N-terminal domain; KEGG: bam:Bamb_0362 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 122834..123445 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053926 YP_001154914.1 CDS Pnuc_0129 NC_009379.1 123474 123881 D PFAM: Stringent starvation protein B; KEGG: rso:RSc2925 stringent starvation protein B; stringent starvation protein B 123474..123881 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052177 YP_001154915.1 CDS Pnuc_0130 NC_009379.1 124186 124761 D KEGG: cph:Cpha266_1837 TPR domain protein; hypothetical protein 124186..124761 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052050 YP_001154916.1 CDS Pnuc_0131 NC_009379.1 124781 126121 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azo:azo2850 sugar transport protein; general substrate transporter complement(124781..126121) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053249 YP_001154917.1 CDS Pnuc_0132 NC_009379.1 126296 126880 D KEGG: pna:Pnap_3102 phasin family protein; phasin family protein 126296..126880 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053449 YP_001154918.1 CDS Pnuc_0133 NC_009379.1 126974 128248 R PFAM: protein of unknown function DUF195; KEGG: mpt:Mpe_B0614 hypothetical protein; hypothetical protein complement(126974..128248) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053833 YP_001154919.1 CDS Pnuc_0134 NC_009379.1 128262 128570 R TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: reh:H16_A3343 glutaredoxin-related protein; glutaredoxin-like protein complement(128262..128570) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053225 YP_001154920.1 CDS Pnuc_0135 NC_009379.1 128668 129519 R TIGRFAM: modification methylase, HemK family; PFAM: RNA methylase; methyltransferase small; KEGG: hch:HCH_01734 methylase of polypeptide chain release factors; HemK family modification methylase complement(128668..129519) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053855 YP_001154921.1 CDS prfA NC_009379.1 129527 130606 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(129527..130606) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052119 YP_001154922.1 CDS hemA NC_009379.1 130607 131923 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(130607..131923) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052967 YP_001154923.1 CDS Pnuc_0138 NC_009379.1 132189 132983 R PFAM: Uracil-DNA glycosylase superfamily; KEGG: reu:Reut_A3028 uracil-DNA glycosylase; uracil-DNA glycosylase complement(132189..132983) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051970 YP_001154924.1 CDS Pnuc_0139 NC_009379.1 132983 134767 R PFAM: PDZ/DHR/GLGF domain protein; peptidase M61 domain protein; KEGG: azo:azo2068 conserved hypothetical protein; peptidase M61 domain-containing protein complement(132983..134767) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052957 YP_001154925.1 CDS Pnuc_0140 NC_009379.1 134779 135492 R KEGG: reu:Reut_A3035 probable thiol:disulfide interchange protein; thiol:disulfide interchange protein complement(134779..135492) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051904 YP_001154926.1 CDS Pnuc_0141 NC_009379.1 135485 136759 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: reu:Reut_A3036 hypothetical protein; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(135485..136759) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053411 YP_001154927.1 CDS Pnuc_0142 NC_009379.1 136800 137894 D TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: bpm:BURPS1710b_3587 GTP-binding protein YchF; GTP-binding protein YchF 136800..137894 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052220 YP_001154928.1 CDS Pnuc_0143 NC_009379.1 137967 138317 R KEGG: rme:Rmet_5343 hypothetical protein; hypothetical protein complement(137967..138317) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052907 YP_001154929.1 CDS Pnuc_0144 NC_009379.1 138429 138998 D KEGG: rme:Rmet_5344 hypothetical protein; hypothetical protein 138429..138998 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053839 YP_001154930.1 CDS trpC NC_009379.1 138979 139782 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase complement(138979..139782) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053132 YP_001154931.1 CDS trpD NC_009379.1 139792 140817 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(139792..140817) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052284 YP_001154932.1 CDS Pnuc_0147 NC_009379.1 140826 141392 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: rso:RSc2882 probable panthranilate synthase component II (glutamine amido-transferase) protein; glutamine amidotransferase of anthranilate synthase complement(140826..141392) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053399 YP_001154933.1 CDS Pnuc_0148 NC_009379.1 141376 142881 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(141376..142881) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052021 YP_001154934.1 CDS Pnuc_0149 NC_009379.1 142881 143606 R PFAM: ribulose-phosphate 3-epimerase; KEGG: bpm:BURPS1710b_3573 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(142881..143606) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053289 YP_001154935.1 CDS apaG NC_009379.1 143656 144030 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 143656..144030 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052906 YP_001154936.1 CDS Pnuc_0151 NC_009379.1 144169 145296 D PFAM: MltA domain protein; 3D domain protein; KEGG: rme:Rmet_3173 MltA; MltA domain-containing protein 144169..145296 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052606 YP_001154937.1 CDS Pnuc_0152 NC_009379.1 145299 146489 R KEGG: rso:RSc2871 hippurate hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(145299..146489) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052236 YP_001154938.1 CDS Pnuc_0153 NC_009379.1 146548 147264 R TIGRFAM: dethiobiotin synthase; KEGG: eba:ebA6011 cobyrinic acid a,c-diamide synthase:dethiobiotin synthase; dethiobiotin synthase complement(146548..147264) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053738 YP_001154939.1 CDS Pnuc_0154 NC_009379.1 147261 148496 R PFAM: aminotransferase, class I and II; KEGG: reh:H16_A0181 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase complement(147261..148496) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053663 YP_001154940.1 CDS Pnuc_0155 NC_009379.1 148493 149908 R TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: eba:ebA6019 adenosylmethionine-8-amino-7-oxononanoate transaminase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(148493..149908) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053430 YP_001154941.1 CDS Pnuc_0156 NC_009379.1 149930 150967 D KEGG: rfr:Rfer_2292 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 149930..150967 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053152 YP_001154942.1 CDS Pnuc_0157 NC_009379.1 150979 151608 D KEGG: rso:RSc2854 ubiquinone biosynthesis protein; ubiquinone biosynthesis protein 150979..151608 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052724 YP_001154943.1 CDS Pnuc_0158 NC_009379.1 151901 152332 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 151901..152332 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052447 YP_001154944.1 CDS mraW NC_009379.1 152345 153295 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rme:Rmet_3136 methyltransferase; S-adenosyl-methyltransferase MraW 152345..153295 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053155 YP_001154945.1 CDS Pnuc_0160 NC_009379.1 153292 153558 D PFAM: cell division protein FtsL; KEGG: reh:H16_A3280 cell division protein FtsL; cell division protein FtsL 153292..153558 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053847 YP_001154946.1 CDS Pnuc_0161 NC_009379.1 153555 155327 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: reu:Reut_A2985 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 153555..155327 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053713 YP_001154947.1 CDS Pnuc_0162 NC_009379.1 155324 156874 D TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: reu:Reut_A2984 UDP-N-acetylmuramyl-tripeptide synthetase; UDP-N-acetylmuramyl tripeptide synthetase 155324..156874 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053298 YP_001154948.1 CDS Pnuc_0163 NC_009379.1 156874 158319 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: bps:BPSL3029 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 156874..158319 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052855 YP_001154949.1 CDS mraY NC_009379.1 158310 159479 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 158310..159479 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052762 YP_001154950.1 CDS Pnuc_0165 NC_009379.1 159494 161116 D TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: reu:Reut_A2981 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 159494..161116 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052443 YP_001154951.1 CDS Pnuc_0166 NC_009379.1 161113 162384 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: reu:Reut_A2980 cell cycle protein; cell division protein FtsW 161113..162384 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052188 YP_001154952.1 CDS murG NC_009379.1 162381 163454 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 162381..163454 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053717 YP_001154953.1 CDS murC NC_009379.1 163451 164887 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 163451..164887 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053559 YP_001154954.1 CDS ddl NC_009379.1 164880 165893 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 164880..165893 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053110 YP_001154955.1 CDS Pnuc_0170 NC_009379.1 165890 166747 D PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: rso:RSc2841 cell division transmembrane protein; polypeptide-transport-associated domain-containing protein 165890..166747 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052542 YP_001154956.1 CDS Pnuc_0171 NC_009379.1 166757 167986 D PFAM: cell division protein FtsA; KEGG: rso:RSc2840 probable cell division protein FtsA; cell division protein FtsA 166757..167986 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052183 YP_001154957.1 CDS Pnuc_0172 NC_009379.1 168035 169375 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 168035..169375 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051938 YP_001154958.1 CDS Pnuc_0173 NC_009379.1 169488 169988 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bxe:Bxe_A0492 type 2 peroxiredoxin, AhpC/TSA family; redoxin domain-containing protein 169488..169988 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053657 YP_001154959.1 CDS lpxC NC_009379.1 170020 170934 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 170020..170934 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053123 YP_001154960.1 CDS Pnuc_0175 NC_009379.1 170956 171453 R hypothetical protein complement(170956..171453) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052011 YP_001154961.1 CDS Pnuc_0176 NC_009379.1 171507 174272 D TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: rme:Rmet_3118 preprotein translocase, SecA subunit; Preprotein translocase subunit SecA 171507..174272 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052628 YP_001154962.1 CDS Pnuc_0177 NC_009379.1 174442 174900 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: gfo:orf438 molybdenum-dependent oxidoreductase iron-sulfur binding subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein 174442..174900 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052394 YP_001154963.1 CDS Pnuc_0178 NC_009379.1 174912 177035 D KEGG: sfu:Sfum_1730 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding 174912..177035 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054010 YP_001154964.1 CDS Pnuc_0179 NC_009379.1 177114 178349 D KEGG: reh:H16_A3263 N-acetylglutamate synthase; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 177114..178349 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052596 YP_001154965.1 CDS Pnuc_0180 NC_009379.1 178364 179221 D PFAM: protein of unknown function DUF815; KEGG: reh:H16_A3262 predicted ATPase, AAA+ superfamily; hypothetical protein 178364..179221 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053264 YP_001154966.1 CDS Pnuc_0181 NC_009379.1 179231 179647 D PFAM: NUDIX hydrolase; KEGG: bxe:Bxe_A0498 mutator protein(7,8-dihydro-8-oxoguanine-triphosphatase), MutT; NUDIX hydrolase 179231..179647 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052485 YP_001154967.1 CDS Pnuc_0182 NC_009379.1 179644 180396 R PFAM: protein of unknown function DUF1342; KEGG: rso:RSc2829 hypothetical protein; hypothetical protein complement(179644..180396) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052794 YP_001154968.1 CDS Pnuc_0183 NC_009379.1 180408 181028 R KEGG: bam:Bamb_0478 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(180408..181028) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052845 YP_001154969.1 CDS Pnuc_0184 NC_009379.1 181049 181549 R PFAM: peptidase A24A, prepilin type IV; KEGG: pfo:Pfl_4822 prepilin peptidase; peptidase A24A, prepilin type IV complement(181049..181549) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052793 YP_001154970.1 CDS Pnuc_0185 NC_009379.1 181549 182595 R PFAM: type II secretion system protein; KEGG: rme:Rmet_3109 type II secretion system protein; type II secretion system protein complement(181549..182595) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052482 YP_001154971.1 CDS Pnuc_0186 NC_009379.1 182586 183668 R PFAM: type II secretion system protein E; KEGG: rme:Rmet_3108 type II secretion system protein E; type II secretion system protein E complement(182586..183668) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054004 YP_001154972.1 CDS Pnuc_0187 NC_009379.1 183665 184954 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rso:RSc2824 probable transmembrane protein; hypothetical protein complement(183665..184954) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052922 YP_001154973.1 CDS Pnuc_0188 NC_009379.1 185033 185584 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: reh:H16_A0591 methylated-DNA [protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 185033..185584 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053255 YP_001154974.1 CDS Pnuc_0189 NC_009379.1 185581 186570 R PFAM: Squalene/phytoene synthase; KEGG: neu:NE1958 squalene and phytoene synthase; squalene/phytoene synthase complement(185581..186570) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052006 YP_001154975.1 CDS Pnuc_0190 NC_009379.1 186678 188093 D PFAM: Na+/solute symporter; KEGG: reh:H16_A0450 APC transporter, SSS family; Na+/solute symporter 186678..188093 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053674 YP_001154976.1 CDS Pnuc_0191 NC_009379.1 188199 189218 D KEGG: pol:Bpro_2793 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 188199..189218 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052131 YP_001154977.1 CDS Pnuc_0192 NC_009379.1 189313 190080 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rpe:RPE_1953 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(189313..190080) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053761 YP_001154978.1 CDS Pnuc_0193 NC_009379.1 190112 191116 R PFAM: Polyprenyl synthetase; KEGG: bxe:Bxe_A0506 octylprenyl-diphosphate synthase; farnesyltranstransferase complement(190112..191116) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053629 YP_001154979.1 CDS rplU NC_009379.1 191192 191503 D PFAM: ribosomal protein L21; KEGG: rso:RSc2822 probable 50S ribosomal subunit protein L21; 50S ribosomal protein L21 191192..191503 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053754 YP_001154980.1 CDS rpmA NC_009379.1 191523 191783 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 191523..191783 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053056 YP_001154981.1 CDS obgE NC_009379.1 191872 192960 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 191872..192960 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053263 YP_001154982.1 CDS Pnuc_0197 NC_009379.1 192986 193768 D KEGG: rme:Rmet_3103 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; glutamate 5-kinase 192986..193768 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053684 YP_001154983.1 CDS Pnuc_0198 NC_009379.1 193755 194327 R KEGG: bpm:BURPS1710b_3520 lipoprotein; lipoprotein complement(193755..194327) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052947 YP_001154984.1 CDS Pnuc_0199 NC_009379.1 194329 194928 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(194329..194928) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052864 YP_001154985.1 CDS Pnuc_0200 NC_009379.1 194977 196719 D TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: rme:Rmet_3100 prolyl-tRNA synthetase; prolyl-tRNA synthetase 194977..196719 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052662 YP_001154986.1 CDS Pnuc_0201 NC_009379.1 196755 198137 R KEGG: bte:BTH_I1149 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(196755..198137) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053697 YP_001154987.1 CDS Pnuc_0202 NC_009379.1 198158 199006 D PFAM: cytochrome c assembly protein; KEGG: bxe:Bxe_A0517 cytochrome c assembly protein; cytochrome c assembly protein 198158..199006 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053065 YP_001154988.1 CDS Pnuc_0203 NC_009379.1 199139 199816 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: reh:H16_A3236 N-acetylmuramoyl-L-alanine amidase; N-acetyl-anhydromuranmyl-L-alanine amidase 199139..199816 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052801 YP_001154989.1 CDS Pnuc_0204 NC_009379.1 200089 203070 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 200089..203070 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052703 YP_001154990.1 CDS Pnuc_0205 NC_009379.1 203116 204300 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 203116..204300 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052806 YP_001154991.1 CDS Pnuc_0206 NC_009379.1 204635 204949 D hypothetical protein 204635..204949 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053203 YP_001154992.1 CDS Pnuc_0207 NC_009379.1 205130 206089 R PFAM: PfkB domain protein; KEGG: reh:H16_A3176 carbohydrate kinase, PfkB family; ribokinase-like domain-containing protein complement(205130..206089) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053355 YP_001154993.1 CDS Pnuc_0208 NC_009379.1 206134 207654 R TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_0505 ribosomal protein L11 methyltransferase; 50S ribosomal protein L11 methyltransferase complement(206134..207654) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053176 YP_001154994.1 CDS Pnuc_0209 NC_009379.1 207671 209035 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rso:RSc2787 probable biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase complement(207671..209035) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053189 YP_001154995.1 CDS Pnuc_0210 NC_009379.1 209083 209547 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bml:BMA10299_A1281 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(209083..209547) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051920 YP_001154996.1 CDS Pnuc_0211 NC_009379.1 209584 210033 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(209584..210033) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053909 YP_001154997.1 CDS Pnuc_0212 NC_009379.1 210282 210809 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: reu:Reut_A2863 thioredoxin-related transmembrane protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(210282..210809) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053168 YP_001154998.1 CDS Pnuc_0213 NC_009379.1 210836 212233 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: bpm:BURPS1710b_3496 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; DP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 210836..212233 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052321 YP_001154999.1 CDS Pnuc_0214 NC_009379.1 212253 212990 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rme:Rmet_3057 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 212253..212990 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053851 YP_001155000.1 CDS Pnuc_0215 NC_009379.1 212993 215023 D PFAM: ribonuclease II; KEGG: rme:Rmet_3056 ribonuclease II; ribonuclease II 212993..215023 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053951 YP_001155001.1 CDS Pnuc_0216 NC_009379.1 215007 215894 D TIGRFAM: TonB family protein; KEGG: rso:RSc2778 hypothetical protein; TonB family protein 215007..215894 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053943 YP_001155002.1 CDS Pnuc_0217 NC_009379.1 215943 216848 D KEGG: bte:BTH_I1171 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate 5-dehydrogenase 215943..216848 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052279 YP_001155003.1 CDS Pnuc_0218 NC_009379.1 216857 217594 D TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51; KEGG: rme:Rmet_3053 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase 216857..217594 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053356 YP_001155004.1 CDS pyrF NC_009379.1 217598 218443 R type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(217598..218443) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053519 YP_001155005.1 CDS Pnuc_0220 NC_009379.1 218517 219482 D TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: reu:Reut_A2853 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 218517..219482 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053078 YP_001155006.1 CDS Pnuc_0221 NC_009379.1 219484 219978 R PFAM: CinA domain protein; KEGG: lpf:lpl1767 competence/damage-inducible protein CinA C-terminal domain; CinA domain-containing protein complement(219484..219978) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053857 YP_001155007.1 CDS Pnuc_0222 NC_009379.1 219975 220547 R PFAM: phosphatidylglycerophosphatase A; KEGG: pol:Bpro_4475 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A complement(219975..220547) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053849 YP_001155008.1 CDS Pnuc_0223 NC_009379.1 220544 221563 R TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rso:RSc2768 thiamine monophosphate kinase; thiamine-monophosphate kinase complement(220544..221563) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053562 YP_001155009.1 CDS Pnuc_0224 NC_009379.1 221648 223969 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 221648..223969 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053370 YP_001155010.1 CDS Pnuc_0225 NC_009379.1 224098 224718 D KEGG: rso:RSc2765 hypothetical protein; hypothetical protein 224098..224718 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053271 YP_001155011.1 CDS Pnuc_0226 NC_009379.1 224748 225509 R PFAM: protein of unknown function DUF558; KEGG: rso:RSc2763 hypothetical protein; hypothetical protein complement(224748..225509) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053037 YP_001155012.1 CDS Pnuc_0227 NC_009379.1 225575 227548 D TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: rso:RSc2750 transketolase; transketolase 225575..227548 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052754 YP_001155013.1 CDS Pnuc_0228 NC_009379.1 227574 228602 D KEGG: mpt:Mpe_A0260 glycerladehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 227574..228602 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052709 YP_001155014.1 CDS Pnuc_0229 NC_009379.1 228696 229151 R PFAM: ferric-uptake regulator; KEGG: rso:RSc2747 probable ferric uptake transcriptional repressor transcription regulator protein; ferric uptake regulator family protein complement(228696..229151) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052486 YP_001155015.1 CDS Pnuc_0230 NC_009379.1 229195 229944 D PFAM: SmpA/OmlA domain protein; KEGG: reh:H16_A3142 lipoprotein; SmpA/OmlA domain-containing protein 229195..229944 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053617 YP_001155016.1 CDS Pnuc_0231 NC_009379.1 230009 230812 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 230009..230812 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053890 YP_001155017.1 CDS leuS NC_009379.1 230862 233534 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 230862..233534 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053383 YP_001155018.1 CDS Pnuc_0233 NC_009379.1 233553 234080 D KEGG: reh:H16_A3138 rare lipoprotein B precursor; rare lipoprotein B precursor 233553..234080 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053661 YP_001155019.1 CDS Pnuc_0234 NC_009379.1 234096 235157 D TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: rso:RSc2742 probable DNA polymerase III (delta subunit) protein; DNA polymerase III subunit delta 234096..235157 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053504 YP_001155020.1 CDS proA NC_009379.1 235204 236493 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 235204..236493 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053906 YP_001155021.1 CDS Pnuc_0236 NC_009379.1 236537 236962 D PFAM: conserved hypothetical protein 701; KEGG: bbr:BB3690 conserved inner membrane protein; hypothetical protein 236537..236962 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052836 YP_001155022.1 CDS Pnuc_0237 NC_009379.1 237009 238466 D PFAM: RNA methylase; THUMP domain protein; KEGG: bxe:Bxe_A4003 hypothetical protein; RNA methylase 237009..238466 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052242 YP_001155023.1 CDS Pnuc_0238 NC_009379.1 238523 238693 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rme:Rmet_0668 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 238523..238693 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053498 YP_001155024.1 CDS Pnuc_0239 NC_009379.1 238706 240010 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 238706..240010 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053619 YP_001155025.1 CDS apaH NC_009379.1 240027 240866 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(240027..240866) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053615 YP_001155026.1 CDS Pnuc_0241 NC_009379.1 240900 242378 R PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: bxe:Bxe_B2844 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase complement(240900..242378) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053918 YP_001155027.1 CDS Pnuc_0242 NC_009379.1 242455 243273 D PFAM: protein of unknown function DUF218; KEGG: nwi:Nwi_1708 protein of unknown function DUF218; hypothetical protein 242455..243273 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053501 YP_001155028.1 CDS Pnuc_0243 NC_009379.1 243296 243928 D PFAM: protein of unknown function DUF179; KEGG: rso:RSc0675 hypothetical protein; hypothetical protein 243296..243928 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053486 YP_001155029.1 CDS Pnuc_0244 NC_009379.1 243921 244337 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 243921..244337 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053333 YP_001155030.1 CDS Pnuc_0245 NC_009379.1 244354 244857 D PFAM: phosphoribosyltransferase; KEGG: bte:BTH_I1464 pyrimidine operon regulatory protein PyrR; phosphoribosyltransferase 244354..244857 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053908 YP_001155031.1 CDS pyrB NC_009379.1 244854 245834 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 244854..245834 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053346 YP_001155032.1 CDS Pnuc_0247 NC_009379.1 245868 247199 D KEGG: gsu:GSU2251 hypothetical protein; hypothetical protein 245868..247199 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053341 YP_001155033.1 CDS Pnuc_0248 NC_009379.1 247205 248116 D hypothetical protein 247205..248116 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053204 YP_001155034.1 CDS Pnuc_0249 NC_009379.1 248117 248836 D PFAM: glycosyl transferase, family 25; KEGG: hhe:HH0323 glycosyl transferase, family 25; glycosyl transferase family protein 248117..248836 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053870 YP_001155035.1 CDS Pnuc_0250 NC_009379.1 248848 249906 R hypothetical protein complement(248848..249906) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053868 YP_001155036.1 CDS Pnuc_0251 NC_009379.1 249910 250854 R KEGG: hpa:HPAG1_0636 alpha 1,3-fucosyltransferase; hypothetical protein complement(249910..250854) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053867 YP_001155037.1 CDS Pnuc_0252 NC_009379.1 250877 251644 D hypothetical protein 250877..251644 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053865 YP_001155038.1 CDS Pnuc_0253 NC_009379.1 251688 252746 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cvi:CV4010 dTDPglucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 251688..252746 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053848 YP_001155039.1 CDS Pnuc_0254 NC_009379.1 252748 253707 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: reh:H16_A1850 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 252748..253707 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053836 YP_001155040.1 CDS Pnuc_0255 NC_009379.1 253734 254663 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: reu:Reut_A0714 glucose-1-phosphate thymidylyltransferase, long form; glucose-1-phosphate thymidylyltransferase 253734..254663 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052900 YP_001155041.1 CDS Pnuc_0256 NC_009379.1 254660 255214 D KEGG: eba:ebA2275 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 254660..255214 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053570 YP_001155042.1 CDS Pnuc_0257 NC_009379.1 255216 256244 D TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; KEGG: rme:Rmet_2715 lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase I 255216..256244 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053374 YP_001155043.1 CDS Pnuc_0258 NC_009379.1 256267 257886 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: reh:H16_A2879 cation/multidrug efflux system outer membrane porin; TolC family type I secretion outer membrane protein complement(256267..257886) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052369 YP_001155044.1 CDS Pnuc_0259 NC_009379.1 257938 258849 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 257938..258849 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052640 YP_001155045.1 CDS Pnuc_0260 NC_009379.1 258885 259343 D KEGG: azo:azo2606 conserved hypothetical membrane protein; hypothetical protein 258885..259343 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053524 YP_001155046.1 CDS Pnuc_0261 NC_009379.1 259368 260303 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: xft:PD1543 dTDP-glucose 4-6-dehydratase; NAD-dependent epimerase/dehydratase 259368..260303 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053753 YP_001155047.1 CDS Pnuc_0262 NC_009379.1 260305 261120 D KEGG: bxe:Bxe_A0859 conserved hypothetical protein 91; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 260305..261120 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053762 YP_001155048.1 CDS Pnuc_0263 NC_009379.1 261149 262621 R KEGG: mpt:Mpe_A2324 succinate-semialdehyde dehydrogenase (NAD(P)+); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase complement(261149..262621) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054011 YP_001155049.1 CDS Pnuc_0264 NC_009379.1 262776 263300 R TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: mfa:Mfla_0493 NusB antitermination factor; NusB antitermination factor complement(262776..263300) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052376 YP_001155050.1 CDS ribH NC_009379.1 263305 263817 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(263305..263817) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053474 YP_001155051.1 CDS Pnuc_0266 NC_009379.1 263847 264992 R PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: reu:Reut_A0770 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(263847..264992) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053150 YP_001155052.1 CDS Pnuc_0267 NC_009379.1 265276 265968 D hypothetical protein 265276..265968 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053827 YP_001155053.1 CDS Pnuc_0268 NC_009379.1 265965 266294 D hypothetical protein 265965..266294 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053115 YP_001155054.1 CDS Pnuc_0269 NC_009379.1 266344 266853 D hypothetical protein 266344..266853 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053702 YP_001155055.1 CDS Pnuc_0270 NC_009379.1 266870 267985 D KEGG: rme:Rmet_2688 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 266870..267985 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053859 YP_001155056.1 CDS Pnuc_0271 NC_009379.1 267995 268612 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 267995..268612 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052107 YP_001155057.1 CDS Pnuc_0272 NC_009379.1 268640 269380 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: reh:H16_A2826 predicted PP-loop superfamily ATPase; exsB protein complement(268640..269380) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053170 YP_001155058.1 CDS Pnuc_0273 NC_009379.1 269389 270120 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: reh:H16_A2827 hypothetical membrane associated protein; TPR repeat-containing protein complement(269389..270120) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052631 YP_001155059.1 CDS Pnuc_0274 NC_009379.1 270121 270624 R PFAM: OmpA/MotB domain protein; KEGG: reh:H16_A2828 outer membrane protein or related peptidoglycan-associated (LipO)protein; OmpA/MotB domain-containing protein complement(270121..270624) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052395 YP_001155060.1 CDS tolB NC_009379.1 270770 272080 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(270770..272080) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053920 YP_001155061.1 CDS Pnuc_0276 NC_009379.1 272084 272935 R TIGRFAM: TonB family protein; TonB, C-terminal domain; KEGG: reh:H16_A1671 hypothetical membrane associated protein; TonB domain-containing protein complement(272084..272935) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053903 YP_001155062.1 CDS Pnuc_0277 NC_009379.1 272960 273379 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bxe:Bxe_A3918 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(272960..273379) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051983 YP_001155063.1 CDS Pnuc_0278 NC_009379.1 273389 274045 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: bam:Bamb_0680 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(273389..274045) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051946 YP_001155064.1 CDS glyA NC_009379.1 274122 275366 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 274122..275366 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051903 YP_001155065.1 CDS nrdR NC_009379.1 275392 275838 D PFAM: ATP-cone domain protein; KEGG: rme:Rmet_2681 protein of unknown function DUF193; transcriptional regulator NrdR 275392..275838 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052682 YP_001155066.1 CDS adk NC_009379.1 275921 276586 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(275921..276586) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051891 YP_001155067.1 CDS Pnuc_0282 NC_009379.1 276690 277454 R KEGG: reu:Reut_A0591 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(276690..277454) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052074 YP_001155068.1 CDS Pnuc_0283 NC_009379.1 277467 277649 R PFAM: protein of unknown function DUF343; KEGG: ppr:PBPRA2383 hypothetical protein; hypothetical protein complement(277467..277649) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052514 YP_001155069.1 CDS lpxK NC_009379.1 277718 278809 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(277718..278809) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052654 YP_001155070.1 CDS Pnuc_0285 NC_009379.1 278830 279279 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aav:Aave_2565 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(278830..279279) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053344 YP_001155071.1 CDS Pnuc_0286 NC_009379.1 279304 279942 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: reh:H16_A0608 biopolymer transport channel protein; MotA/TolQ/ExbB proton channel complement(279304..279942) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053373 YP_001155072.1 CDS Pnuc_0287 NC_009379.1 280257 281483 D KEGG: bur:Bcep18194_A5875 exodeoxyribonuclease VII; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit 280257..281483 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052339 YP_001155073.1 CDS Pnuc_0288 NC_009379.1 281532 282581 D KEGG: pol:Bpro_3563 hypothetical protein; hypothetical protein 281532..282581 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052263 YP_001155074.1 CDS murB NC_009379.1 282601 283638 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(282601..283638) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053492 YP_001155075.1 CDS Pnuc_0290 NC_009379.1 283744 284229 D PFAM: protein of unknown function DUF520; KEGG: bxe:Bxe_A0754 hypothetical protein; hypothetical protein 283744..284229 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053881 YP_001155076.1 CDS Pnuc_0291 NC_009379.1 284318 284590 D KEGG: rpc:RPC_2134 hypothetical protein; hypothetical protein 284318..284590 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053780 YP_001155077.1 CDS Pnuc_0292 NC_009379.1 284636 285553 D TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rso:RSc2544 probable integrase/recombinase; tyrosine recombinase XerD 284636..285553 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052972 YP_001155078.1 CDS Pnuc_0293 NC_009379.1 285601 286233 D PFAM: protein of unknown function DUF205; KEGG: reu:Reut_A0575 hypothetical protein; hypothetical protein 285601..286233 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053961 YP_001155079.1 CDS Pnuc_0294 NC_009379.1 286236 286607 D KEGG: ajs:Ajs_2347 membrane protein-like protein; hypothetical protein 286236..286607 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052345 YP_001155080.1 CDS Pnuc_0295 NC_009379.1 286648 287436 D PFAM: GTP cyclohydrolase I; KEGG: mpt:Mpe_A1074 GTP cyclohydrolase I; GTP cyclohydrolase I 286648..287436 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052940 YP_001155081.1 CDS Pnuc_0296 NC_009379.1 287833 288141 D PFAM: High potential iron-sulfur protein; KEGG: rfr:Rfer_3162 twin-arginine translocation pathway signal; high potential iron-sulfur protein 287833..288141 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052104 YP_001155082.1 CDS Pnuc_0297 NC_009379.1 288273 288806 D KEGG: psb:Psyr_4859 ISPsy8, transposase OrfA; ISPsy8, transposase OrfA 288273..288806 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053099 YP_001155083.1 CDS Pnuc_0298 NC_009379.1 288821 289633 D PFAM: Integrase, catalytic region; KEGG: bca:BCE_A0056 IS3-family transposase, OrfB; integrase catalytic subunit 288821..289633 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053620 YP_001155084.1 CDS Pnuc_0299 NC_009379.1 289763 290305 D PFAM: HPP family protein+B94; KEGG: pol:Bpro_0211 CBS domain containing membrane protein; HPP family protein 289763..290305 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053509 YP_001155085.1 CDS Pnuc_0300 NC_009379.1 290331 290576 R hypothetical protein complement(290331..290576) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052895 YP_001155086.1 CDS Pnuc_0301 NC_009379.1 290637 292112 D KEGG: mpt:Mpe_A0629 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase 290637..292112 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052347 YP_001155087.1 CDS Pnuc_0302 NC_009379.1 292163 293293 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: stm:STM2109 GDP-D-mannose dehydratase; GDP-mannose 4,6-dehydratase 292163..293293 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052064 YP_001155088.1 CDS Pnuc_0303 NC_009379.1 293320 294297 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_1235 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 293320..294297 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053085 YP_001155089.1 CDS Pnuc_0304 NC_009379.1 294310 295056 D hypothetical protein 294310..295056 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053475 YP_001155090.1 CDS Pnuc_0305 NC_009379.1 295063 296463 D hypothetical protein 295063..296463 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053869 YP_001155091.1 CDS Pnuc_0306 NC_009379.1 296491 297297 D PFAM: glycosyl transferase, family 2; KEGG: plt:Plut_1853 glycosyltransferase involved in cell wall biogenesis-like; glycosyl transferase family protein 296491..297297 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053843 YP_001155092.1 CDS Pnuc_0307 NC_009379.1 297315 298223 D KEGG: tel:tlr2386 hemolytic protein hlpA homolog; hemolytic protein hlpA-like protein 297315..298223 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053822 YP_001155093.1 CDS Pnuc_0308 NC_009379.1 298227 299021 R TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: syn:slr1118 UDP-N-acetyl-D-mannosaminuronic acid transferase; WecB/TagA/CpsF family glycosyl transferase complement(298227..299021) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053816 YP_001155094.1 CDS Pnuc_0309 NC_009379.1 299032 300069 R PFAM: glycosyl transferase, family 9; KEGG: sus:Acid_2356 glycosyl transferase, family 9; glycosyl transferase family protein complement(299032..300069) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053807 YP_001155095.1 CDS Pnuc_0310 NC_009379.1 300084 301448 R PFAM: sugar transferase; KEGG: tcx:Tcr_1675 undecaprenyl-phosphate galactosephosphotransferase; sugar transferase complement(300084..301448) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053737 YP_001155096.1 CDS Pnuc_0311 NC_009379.1 301792 303048 D PFAM: polysaccharide biosynthesis protein; KEGG: ecs:ECs2842 O antigen flippase; polysaccharide biosynthesis protein 301792..303048 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053733 YP_001155097.1 CDS Pnuc_0312 NC_009379.1 303045 304208 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ecs:ECs2841 perosamine synthetase; DegT/DnrJ/EryC1/StrS aminotransferase 303045..304208 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053719 YP_001155098.1 CDS Pnuc_0313 NC_009379.1 304222 305454 D PFAM: glycosyl transferase, group 1; KEGG: ecs:ECs2840 glycosyl transferase; group 1 glycosyl transferase 304222..305454 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053706 YP_001155099.1 CDS Pnuc_0314 NC_009379.1 305659 306342 D PFAM: transferase hexapeptide repeat containing protein; KEGG: reu:Reut_A1128 transferase hexapeptide repeat; hexapaptide repeat-containing transferase 305659..306342 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053677 YP_001155100.1 CDS Pnuc_0315 NC_009379.1 306659 307966 D hypothetical protein 306659..307966 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053667 YP_001155101.1 CDS Pnuc_0316 NC_009379.1 308012 309094 R PFAM: glycosyl transferase, family 4; KEGG: rso:RSc0689 undecaprenyl phosphate N-acetylglucosaminyltransferase transmembrane protein; glycosyl transferase family protein complement(308012..309094) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053590 YP_001155102.1 CDS Pnuc_0317 NC_009379.1 309377 310345 D PFAM: glycosyl transferase, family 2; KEGG: pfl:PFL_5496 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 309377..310345 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053571 YP_001155103.1 CDS Pnuc_0318 NC_009379.1 310366 311208 D PFAM: ABC-2 type transporter; KEGG: pol:Bpro_4002 ABC-2; ABC-2 type transporter 310366..311208 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053549 YP_001155104.1 CDS Pnuc_0319 NC_009379.1 311198 312565 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bmv:BMASAVP1_A0928 lipopolysaccharide ABC transporter, ATP-binding protein; ABC transporter 311198..312565 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053537 YP_001155105.1 CDS Pnuc_0320 NC_009379.1 312575 315823 D PFAM: Methyltransferase type 11; KEGG: xom:XOO_0728 hypothetical protein; methyltransferase type 11 312575..315823 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053526 YP_001155106.1 CDS Pnuc_0321 NC_009379.1 315851 316684 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bce:BC0309 methyltransferase; methyltransferase type 11 315851..316684 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053459 YP_001155107.1 CDS Pnuc_0322 NC_009379.1 316681 318021 D hypothetical protein 316681..318021 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053446 YP_001155108.1 CDS Pnuc_0323 NC_009379.1 318052 318993 D PFAM: Phytanoyl-CoA dioxygenase; KEGG: xac:XAC3597 hypothetical protein; phytanoyl-CoA dioxygenase 318052..318993 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053427 YP_001155109.1 CDS Pnuc_0324 NC_009379.1 319022 319996 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: dar:Daro_1706 NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase 319022..319996 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053425 YP_001155110.1 CDS Pnuc_0325 NC_009379.1 320007 321293 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: aav:Aave_0059 amine oxidase; hypothetical protein 320007..321293 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053413 YP_001155111.1 CDS Pnuc_0326 NC_009379.1 321290 321691 D KEGG: rso:RSc0167 hypothetical protein; hypothetical protein 321290..321691 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053403 YP_001155112.1 CDS Pnuc_0327 NC_009379.1 321841 322590 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1708 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(321841..322590) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053317 YP_001155113.1 CDS Pnuc_0328 NC_009379.1 322592 323893 R PFAM: FAD linked oxidase domain protein; KEGG: dar:Daro_1709 FAD linked oxidase, N-terminal; FAD linked oxidase domain-containing protein complement(322592..323893) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053302 YP_001155114.1 CDS Pnuc_0329 NC_009379.1 324082 324966 D catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase 324082..324966 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053290 YP_001155115.1 CDS Pnuc_0330 NC_009379.1 324963 325385 D PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: maq:Maqu_1644 acid phosphatase/vanadium-dependent haloperoxidase related; acid phosphatase/vanadium-dependent haloperoxidase-like protein 324963..325385 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053278 YP_001155116.1 CDS Pnuc_0331 NC_009379.1 325374 326543 R hypothetical protein complement(325374..326543) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053262 YP_001155117.1 CDS Pnuc_0332 NC_009379.1 326564 328021 R hypothetical protein complement(326564..328021) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053256 YP_001155118.1 CDS Pnuc_0334 NC_009379.1 328785 329372 R PFAM: adenylylsulfate kinase; KEGG: net:Neut_0164 sulfate adenylyltransferase., adenylyl-sulfate kinase; adenylylsulfate kinase complement(328785..329372) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052057 YP_001155119.1 CDS Pnuc_0335 NC_009379.1 329767 331197 D PFAM: glycosyl transferase, family 2; Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: gvi:gll2778 hypothetical protein; glycosyl transferase family protein 329767..331197 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053117 YP_001155120.1 CDS Pnuc_0336 NC_009379.1 331297 332829 R hypothetical protein complement(331297..332829) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053113 YP_001155121.1 CDS Pnuc_0337 NC_009379.1 332901 334973 D PFAM: acyltransferase 3; KEGG: xfa:XF0778 O-antigen acetylase; acyltransferase 332901..334973 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052296 YP_001155122.1 CDS Pnuc_0338 NC_009379.1 335020 335916 D hypothetical protein 335020..335916 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053055 YP_001155123.1 CDS Pnuc_0339 NC_009379.1 336004 337035 R PFAM: sodium/calcium exchanger membrane region; KEGG: mpt:Mpe_A0997 Ca2+/H+ antiporter; sodium/calcium exchanger membrane region complement(336004..337035) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053040 YP_001155124.1 CDS Pnuc_0340 NC_009379.1 337121 337486 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: reu:Reut_A2686 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein 337121..337486 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053028 YP_001155125.1 CDS Pnuc_0341 NC_009379.1 337549 337890 D KEGG: yps:YPTB1722 hypothetical protein; hypothetical protein 337549..337890 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053025 YP_001155126.1 CDS Pnuc_0342 NC_009379.1 337887 338261 D KEGG: yps:YPTB1721 hypothetical protein; hypothetical protein 337887..338261 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052994 YP_001155127.1 CDS Pnuc_0343 NC_009379.1 338272 339093 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(338272..339093) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052932 YP_001155128.1 CDS Pnuc_0344 NC_009379.1 339115 339717 R PFAM: Uncharacterised conserved protein UCP030820; KEGG: bte:BTH_I0815 bacterial protein of unknown function (DUF934) superfamily; hypothetical protein complement(339115..339717) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052917 YP_001155129.1 CDS Pnuc_0345 NC_009379.1 339714 341426 R PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bxe:Bxe_A3664 sulfite reductase; nitrite/sulfite reductase hemoprotein beta subunit complement(339714..341426) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052870 YP_001155130.1 CDS Pnuc_0346 NC_009379.1 341589 341966 D KEGG: rfr:Rfer_2813 transcriptional regulator, XRE family; XRE family transcriptional regulator 341589..341966 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052850 YP_001155131.1 CDS Pnuc_0347 NC_009379.1 342028 342636 D KEGG: rfr:Rfer_2812 hypothetical protein; hypothetical protein 342028..342636 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052782 YP_001155132.1 CDS Pnuc_0348 NC_009379.1 343165 343509 R TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: ana:alr9029 death on curing protein; death-on-curing family protein complement(343165..343509) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052770 YP_001155133.1 CDS Pnuc_0349 NC_009379.1 343853 344224 R hypothetical protein complement(343853..344224) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052747 YP_001155134.1 CDS Pnuc_0350 NC_009379.1 344667 345245 D KEGG: sus:Acid_4082 hypothetical protein; hypothetical protein 344667..345245 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052742 YP_001155135.1 CDS Pnuc_0351 NC_009379.1 345477 346565 D PFAM: acyltransferase 3; KEGG: dar:Daro_0178 acyltransferase 3; acyltransferase 345477..346565 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052722 YP_001155136.1 CDS Pnuc_0352 NC_009379.1 346587 347114 R PFAM: protein of unknown function DUF615; KEGG: bam:Bamb_0956 protein of unknown function DUF615; hypothetical protein complement(346587..347114) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052707 YP_001155137.1 CDS Pnuc_0353 NC_009379.1 347229 348848 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rso:RSc3345 choline dehydrogenase lipoprotein oxidoreductase; choline dehydrogenase 347229..348848 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052615 YP_001155138.1 CDS Pnuc_0354 NC_009379.1 348841 349764 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: ccr:CC3090 integral membrane protein; hypothetical protein 348841..349764 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052621 YP_001155139.1 CDS Pnuc_0355 NC_009379.1 349908 351092 D PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A3706 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; extracellular ligand-binding receptor 349908..351092 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052604 YP_001155140.1 CDS Pnuc_0356 NC_009379.1 351239 352117 D PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A3707 ABC branched chain amino acid family transporter, inner membrane subunit; inner-membrane translocator 351239..352117 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052574 YP_001155141.1 CDS Pnuc_0357 NC_009379.1 352117 354048 D PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_3519 ABC transporter related; ABC transporter 352117..354048 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052562 YP_001155142.1 CDS Pnuc_0358 NC_009379.1 354080 354808 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_3518 ABC transporter related; ABC transporter 354080..354808 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052547 YP_001155143.1 CDS Pnuc_0359 NC_009379.1 354880 355383 R hypothetical protein complement(354880..355383) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052489 YP_001155144.1 CDS Pnuc_0360 NC_009379.1 355443 356207 R PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN0009 hypothetical protein; hypothetical protein complement(355443..356207) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052464 YP_001155145.1 CDS Pnuc_0361 NC_009379.1 356314 357228 R KEGG: gbe:GbCGDNIH1_1686 hypothetical secreted protein; hypothetical protein complement(356314..357228) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052453 YP_001155146.1 CDS Pnuc_0362 NC_009379.1 357378 357620 D KEGG: azo:azo3861 conserved hypothetical protein; hypothetical protein 357378..357620 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052433 YP_001155147.1 CDS Pnuc_0363 NC_009379.1 357612 358658 R PFAM: DNA/RNA non-specific endonuclease; KEGG: rme:Rmet_4634 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease complement(357612..358658) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052426 YP_001155148.1 CDS Pnuc_0364 NC_009379.1 359153 360118 D PFAM: Lytic transglycosylase, catalytic; KEGG: reh:H16_A2858 hypothetical membrane associated protein; lytic transglycosylase, catalytic 359153..360118 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052415 YP_001155149.1 CDS Pnuc_0365 NC_009379.1 360186 360533 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: mfa:Mfla_0379 peptidylprolyl isomerase; peptidylprolyl isomerase, FKBP-type complement(360186..360533) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052405 YP_001155150.1 CDS Pnuc_0366 NC_009379.1 360802 363036 D KEGG: reh:H16_B1931 isocitrate dehydrogenase [NADP]; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase 360802..363036 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052389 YP_001155151.1 CDS Pnuc_0367 NC_009379.1 363138 363545 D PFAM: BLUF domain protein; KEGG: tel:tll0078 hypothetical protein; BLUF domain-containing protein 363138..363545 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052371 YP_001155152.1 CDS Pnuc_0368 NC_009379.1 363600 364562 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 363600..364562 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052291 YP_001155153.1 CDS Pnuc_0369 NC_009379.1 364566 365120 D PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: pna:Pnap_1457 lipocalin family protein; Lipocalin family protein 364566..365120 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052280 YP_001155154.1 CDS Pnuc_0370 NC_009379.1 365117 366706 R PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: mpt:Mpe_A2516 vinylacetyl-CoA delta-isomerase; vinylacetyl-CoA Delta-isomerase complement(365117..366706) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052273 YP_001155155.1 CDS Pnuc_0371 NC_009379.1 366791 367474 D PFAM: regulatory protein, TetR; KEGG: mpt:Mpe_A2515 TetR-family transcriptional regulator; TetR family transcriptional regulator 366791..367474 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052239 YP_001155156.1 CDS Pnuc_0372 NC_009379.1 367488 368042 D PFAM: isochorismatase hydrolase; KEGG: mpt:Mpe_A2514 hypothetical protein; isochorismatase hydrolase 367488..368042 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052222 YP_001155157.1 CDS Pnuc_0373 NC_009379.1 368072 368842 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rso:RSc0730 probable oxidoreductase; short-chain dehydrogenase/reductase SDR 368072..368842 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052215 YP_001155158.1 CDS Pnuc_0374 NC_009379.1 368839 369387 R KEGG: ajs:Ajs_1755 hypothetical protein; hypothetical protein complement(368839..369387) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052199 YP_001155159.1 CDS Pnuc_0375 NC_009379.1 369474 370199 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rso:RSc0674 probable ribosomal small subunit pseudouridine synthase A protein; pseudouridine synthase 369474..370199 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052190 YP_001155160.1 CDS Pnuc_0376 NC_009379.1 370207 370518 D PFAM: transcriptional coactivator/pterin dehydratase; KEGG: syn:ssl2296 pterin-4a-carbinolamine dehydratase; transcriptional coactivator/pterin dehydratase 370207..370518 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053673 YP_001155161.1 CDS Pnuc_0377 NC_009379.1 370870 371184 D hypothetical protein 370870..371184 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053280 YP_001155162.1 CDS Pnuc_0378 NC_009379.1 371191 371814 R PFAM: protein of unknown function DUF159; KEGG: rfr:Rfer_4344 protein of unknown function DUF159; hypothetical protein complement(371191..371814) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052758 YP_001155163.1 CDS Pnuc_0379 NC_009379.1 371910 372749 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: neu:NE1418 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 371910..372749 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052566 YP_001155164.1 CDS Pnuc_0380 NC_009379.1 372826 373314 R PFAM: dihydrofolate reductase region; KEGG: reh:H16_A2704 dihydrofolate reductase; dihydrofolate reductase complement(372826..373314) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052271 YP_001155165.1 CDS thyA NC_009379.1 373325 374119 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(373325..374119) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053047 YP_001155166.1 CDS Pnuc_0382 NC_009379.1 374155 375201 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2462 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(374155..375201) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053160 YP_001155167.1 CDS Pnuc_0383 NC_009379.1 375246 375569 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bxe:Bxe_A1051 ferredoxin; 4Fe-4S ferredoxin complement(375246..375569) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052374 YP_001155168.1 CDS Pnuc_0384 NC_009379.1 375667 376683 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 375667..376683 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052179 YP_001155169.1 CDS Pnuc_0385 NC_009379.1 376719 377012 R KEGG: reu:Reut_A2279 hypothetical protein; hypothetical protein complement(376719..377012) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052230 YP_001155170.1 CDS Pnuc_0386 NC_009379.1 377025 378338 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: rso:RSc1037 probable molybdopterin biosynthesis MoeA protein; molybdenum cofactor synthesis domain-containing protein complement(377025..378338) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053850 YP_001155171.1 CDS Pnuc_0387 NC_009379.1 378335 378934 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: bbr:BB2115 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A complement(378335..378934) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052611 YP_001155172.1 CDS moaA NC_009379.1 378934 380049 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(378934..380049) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053288 YP_001155173.1 CDS Pnuc_0389 NC_009379.1 380133 382772 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: rso:RSc1040 probable ribonuclease E (RNase E) protein; ribonuclease complement(380133..382772) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053396 YP_001155174.1 CDS Pnuc_0390 NC_009379.1 383238 384257 D TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: reh:H16_A2578 pseudouridylate synthase, 23S RNA-specific; RluA family pseudouridine synthase 383238..384257 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053434 YP_001155175.1 CDS Pnuc_0391 NC_009379.1 384254 384943 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc1042 phosphoglycolate phosphatase; HAD family hydrolase 384254..384943 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053531 YP_001155176.1 CDS Pnuc_0392 NC_009379.1 384990 385937 D PFAM: peptidase S49; KEGG: rme:Rmet_2436 peptidase S49; peptidase S49 384990..385937 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053576 YP_001155177.1 CDS Pnuc_0393 NC_009379.1 385969 386739 R KEGG: reu:Reut_A2270 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase complement(385969..386739) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053690 YP_001155178.1 CDS Pnuc_0394 NC_009379.1 386762 387367 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: aav:Aave_1179 maf protein; maf protein complement(386762..387367) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053306 YP_001155179.1 CDS Pnuc_0395 NC_009379.1 387410 387985 D PFAM: protein of unknown function DUF177; KEGG: reu:Reut_A2268 protein of unknown function DUF177; hypothetical protein 387410..387985 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052438 YP_001155180.1 CDS rpmF NC_009379.1 388091 388270 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 388091..388270 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052538 YP_001155181.1 CDS Pnuc_0397 NC_009379.1 388354 389367 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 388354..389367 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052835 YP_001155182.1 CDS Pnuc_0398 NC_009379.1 389364 390350 D KEGG: bch:Bcen2424_1121 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase 389364..390350 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053032 YP_001155183.1 CDS Pnuc_0399 NC_009379.1 390393 391328 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: reu:Reut_A2264 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 390393..391328 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053274 YP_001155184.1 CDS Pnuc_0400 NC_009379.1 391368 392111 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rso:RSc1052 3-ketoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase 391368..392111 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052282 YP_001155185.1 CDS acpP NC_009379.1 392212 392451 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 392212..392451 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052200 YP_001155186.1 CDS Pnuc_0402 NC_009379.1 392473 393720 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 392473..393720 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052272 YP_001155187.1 CDS Pnuc_0403 NC_009379.1 393768 395219 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: reu:Reut_A2256 peptidase S1C, Do; protease Do 393768..395219 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052180 YP_001155188.1 CDS Pnuc_0404 NC_009379.1 395366 397171 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 395366..397171 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052113 YP_001155189.1 CDS Pnuc_0405 NC_009379.1 397171 397977 D KEGG: rme:Rmet_2420 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 397171..397977 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052373 YP_001155190.1 CDS rnc NC_009379.1 397982 398773 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 397982..398773 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053042 YP_001155191.1 CDS Pnuc_0407 NC_009379.1 398776 399711 D TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; KEGG: rme:Rmet_2417 GTP-binding protein Era; GTP-binding protein Era 398776..399711 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053826 YP_001155192.1 CDS recO NC_009379.1 399718 400452 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 399718..400452 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053732 YP_001155193.1 CDS Pnuc_0409 NC_009379.1 400465 401211 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 400465..401211 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053723 YP_001155194.1 CDS acpS NC_009379.1 401208 401600 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 401208..401600 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053305 YP_001155195.1 CDS Pnuc_0411 NC_009379.1 401635 402708 D PFAM: glycoside hydrolase, family 3 domain protein; KEGG: reu:Reut_A2247 beta-hexosaminidase; glycoside hydrolase family protein 401635..402708 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053417 YP_001155196.1 CDS Pnuc_0412 NC_009379.1 402737 403474 D PFAM: carbonic anhydrase; KEGG: reh:H16_B2403 periplasmic alpha-carbonic anhydrase; carbonate dehydratase 402737..403474 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053543 YP_001155197.1 CDS Pnuc_0413 NC_009379.1 403561 404121 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(403561..404121) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052777 YP_001155198.1 CDS Pnuc_0414 NC_009379.1 404209 405279 R KEGG: pfl:PFL_4265 hypothetical protein; hypothetical protein complement(404209..405279) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053858 YP_001155199.1 CDS Pnuc_0415 NC_009379.1 405332 407194 D TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit domain protein; excinuclease ABC, C subunit domain protein; UvrB/UvrC protein; KEGG: rme:Rmet_2410 excinuclease ABC, C subunit; excinuclease ABC subunit C 405332..407194 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053814 YP_001155200.1 CDS Pnuc_0416 NC_009379.1 407229 407804 D KEGG: reh:H16_A2546 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 407229..407804 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053671 YP_001155201.1 CDS Pnuc_0417 NC_009379.1 408206 408667 D KEGG: mag:amb4330 hypothetical protein; hypothetical protein 408206..408667 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052012 YP_001155202.1 CDS Pnuc_0418 NC_009379.1 408733 409452 R KEGG: pol:Bpro_2954 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: peptidase S24, S26A and S26B; LexA DNA-binding domain protein; SOS-response transcriptional repressor, LexA complement(408733..409452) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052202 YP_001155203.1 CDS Pnuc_0419 NC_009379.1 409512 410588 D PFAM: Asparaginase/glutaminase; KEGG: reu:Reut_A2007 L-asparaginase, type II; asparaginase/glutaminase 409512..410588 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052229 YP_001155204.1 CDS rpsF NC_009379.1 410724 411098 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 410724..411098 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052419 YP_001155205.1 CDS Pnuc_0421 NC_009379.1 411159 411452 D KEGG: bxe:Bxe_A2455 primosomal replication protein N, PriB; primosomal replication protein N, PriB 411159..411452 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052465 YP_001155206.1 CDS rpsR NC_009379.1 411466 411738 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 411466..411738 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052491 YP_001155207.1 CDS rplI NC_009379.1 411752 412204 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 411752..412204 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052406 YP_001155208.1 CDS Pnuc_0424 NC_009379.1 412229 414724 D PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; KEGG: pol:Bpro_3033 DnaB-like helicase-like; DnaB domain-containing protein 412229..414724 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052706 YP_001155209.1 CDS Pnuc_0425 NC_009379.1 414823 415089 R KEGG: bja:bsl4187 hypothetical protein; hypothetical protein complement(414823..415089) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052427 YP_001155210.1 CDS Pnuc_0426 NC_009379.1 415164 415985 R PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RSc2662 probable transmembrane protein; MscS mechanosensitive ion channel complement(415164..415985) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052718 YP_001155211.1 CDS Pnuc_0427 NC_009379.1 416011 416544 R PFAM: NLP/P60 protein; KEGG: bxe:Bxe_A2393 transmembrane lipoprotein; NLP/P60 protein complement(416011..416544) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052398 YP_001155212.1 CDS Pnuc_0428 NC_009379.1 416525 418171 R PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: rme:Rmet_1970 PhoH-like protein; PhoH family protein complement(416525..418171) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052449 YP_001155213.1 CDS Pnuc_0429 NC_009379.1 418404 418871 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc1317 probable bacterioferritin comigratory oxidoreductase; alkyl hydroperoxide reductase complement(418404..418871) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052573 YP_001155214.1 CDS Pnuc_0430 NC_009379.1 418904 419821 R PFAM: polysaccharide deacetylase; KEGG: bam:Bamb_1801 polysaccharide deacetylase; polysaccharide deacetylase complement(418904..419821) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052204 YP_001155215.1 CDS Pnuc_0431 NC_009379.1 419834 420880 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: bur:Bcep18194_A5163 hypothetical protein; NAD-dependent epimerase/dehydratase family protein complement(419834..420880) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052769 YP_001155216.1 CDS Pnuc_0432 NC_009379.1 420916 421785 R PFAM: formyl transferase domain protein; KEGG: rso:RSc1320 methionyl-tRNA formyltransferase; formyltransferase complement(420916..421785) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052995 YP_001155217.1 CDS Pnuc_0433 NC_009379.1 421786 422748 R PFAM: glycosyl transferase, family 2; KEGG: rso:RSc1321 polymixin resistance glycosyltransferase transmembrane protein; glycosyl transferase family protein complement(421786..422748) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052612 YP_001155218.1 CDS Pnuc_0434 NC_009379.1 422790 423950 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rso:RSc1322 aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(422790..423950) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052755 YP_001155219.1 CDS Pnuc_0435 NC_009379.1 423960 425654 R PFAM: glycosyl transferase, family 39; KEGG: bxe:Bxe_A2384 transmembrane protein; glycosyl transferase family protein complement(423960..425654) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052849 YP_001155220.1 CDS Pnuc_0436 NC_009379.1 425654 426031 R PFAM: protein of unknown function DUF498; KEGG: reh:H16_A2268 hypothetical protein; hypothetical protein complement(425654..426031) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052565 YP_001155221.1 CDS Pnuc_0437 NC_009379.1 426111 427367 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase 426111..427367 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053112 YP_001155222.1 CDS Pnuc_0438 NC_009379.1 427364 428674 D PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase, NAD-binding; KEGG: aav:Aave_1238 homoserine dehydrogenase; homoserine dehydrogenase 427364..428674 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053116 YP_001155223.1 CDS Pnuc_0439 NC_009379.1 428683 430125 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 428683..430125 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052869 YP_001155224.1 CDS Pnuc_0440 NC_009379.1 430157 431398 D TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: reu:Reut_A1991 molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein 430157..431398 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052401 YP_001155225.1 CDS Pnuc_0441 NC_009379.1 431417 431674 D TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: bur:Bcep18194_A5152 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 431417..431674 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053057 YP_001155226.1 CDS Pnuc_0442 NC_009379.1 431676 432140 D PFAM: molybdopterin biosynthesis MoaE; KEGG: dar:Daro_2729 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis protein MoaE 431676..432140 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053036 YP_001155227.1 CDS Pnuc_0443 NC_009379.1 432172 433830 D PFAM: Carboxylesterase, type B; KEGG: nar:Saro_1730 carboxylesterase, type B; carboxylesterase, type B 432172..433830 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053030 YP_001155228.1 CDS Pnuc_0444 NC_009379.1 434063 435331 D PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B4329 major facilitator superfamily MFS_1; major facilitator transporter 434063..435331 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052593 YP_001155229.1 CDS Pnuc_0445 NC_009379.1 435404 437002 R KEGG: bxe:Bxe_B1050 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(435404..437002) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053296 YP_001155230.1 CDS Pnuc_0446 NC_009379.1 437122 437364 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: xac:XAC3202 endonuclease; excinuclease ABC subunit C complement(437122..437364) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053439 YP_001155231.1 CDS Pnuc_0447 NC_009379.1 437468 440071 D PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rme:Rmet_1959 ATPase AAA-2; ATPase 437468..440071 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053405 YP_001155232.1 CDS Pnuc_0448 NC_009379.1 440117 440872 D KEGG: mxa:MXAN_6813 hypothetical protein; hypothetical protein 440117..440872 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053277 YP_001155233.1 CDS Pnuc_0449 NC_009379.1 440883 441866 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4169 uncharacterized protein UPF0065; hypothetical protein complement(440883..441866) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053460 YP_001155234.1 CDS Pnuc_0450 NC_009379.1 441951 443183 D PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb3967 permease of the major facilitator superfamily; major facilitator transporter 441951..443183 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053011 YP_001155235.1 CDS Pnuc_0451 NC_009379.1 443192 445627 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: reh:H16_A2321 heavy metal transporting P-type ATPase; heavy metal translocating P-type ATPase 443192..445627 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053578 YP_001155236.1 CDS Pnuc_0452 NC_009379.1 445637 445813 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; cbb3-type cytochrome oxidase maturation protein 445637..445813 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052378 YP_001155237.1 CDS Pnuc_0453 NC_009379.1 445984 447426 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 445984..447426 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053429 YP_001155238.1 CDS Pnuc_0454 NC_009379.1 447437 448087 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 447437..448087 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053659 YP_001155239.1 CDS Pnuc_0455 NC_009379.1 448087 448272 D KEGG: bbr:BB3327 cytochrome C oxidase subunit; hypothetical protein 448087..448272 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052931 YP_001155240.1 CDS Pnuc_0456 NC_009379.1 448269 449207 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: rso:RSc1279 probable cytochrome C oxidase (subunit III) transmembrane protein; cytochrome c oxidase, cbb3-type subunit III 448269..449207 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053536 YP_001155241.1 CDS Pnuc_0457 NC_009379.1 449211 450668 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rso:RSc1280 probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein; 4Fe-4S ferredoxin 449211..450668 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052746 YP_001155242.1 CDS Pnuc_0458 NC_009379.1 450684 450902 D KEGG: bpe:BP2174 lipoprotein; hypothetical protein 450684..450902 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052952 YP_001155243.1 CDS Pnuc_0459 NC_009379.1 450899 451159 D KEGG: rso:RSc1282 probable transmembrane protein; transmembrane protein 450899..451159 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053442 YP_001155244.1 CDS Pnuc_0460 NC_009379.1 451156 451926 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rso:RSc1283 fumarate and nitrate reduction regulatory transcription regulator protein; CRP/FNR family transcriptional regulator complement(451156..451926) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053530 YP_001155245.1 CDS Pnuc_0461 NC_009379.1 452000 452719 D KEGG: reu:Reut_A2033 probable transmembrane protein; transmembrane protein 452000..452719 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053852 YP_001155246.1 CDS Pnuc_0462 NC_009379.1 452813 453214 R KEGG: mpt:Mpe_A3561 hypothetical protein; hypothetical protein complement(452813..453214) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053875 YP_001155247.1 CDS Pnuc_0463 NC_009379.1 453310 453750 D PFAM: UspA domain protein; KEGG: xcb:XC_4113 hypothetical protein; UspA domain-containing protein 453310..453750 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053450 YP_001155248.1 CDS Pnuc_0464 NC_009379.1 453814 455268 R PFAM: peptidase M23B; KEGG: net:Neut_1544 peptidase M23B; peptidase M23B complement(453814..455268) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053402 YP_001155249.1 CDS Pnuc_0465 NC_009379.1 455301 456233 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bbr:BB2438 probable 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding complement(455301..456233) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053734 YP_001155250.1 CDS Pnuc_0466 NC_009379.1 456342 457475 D PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bbr:BB2683 racemase; mandelate racemase/muconate lactonizing protein 456342..457475 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053772 YP_001155251.1 CDS Pnuc_0467 NC_009379.1 457558 459570 R TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bld:BLi02556 hypothetical protein; TRAP transporter, 4TM/12TM fusion protein complement(457558..459570) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053614 YP_001155252.1 CDS Pnuc_0468 NC_009379.1 459660 460610 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: afu:AF0635 immunogenic protein; TRAP transporter solute receptor TAXI family protein complement(459660..460610) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053986 YP_001155253.1 CDS Pnuc_0469 NC_009379.1 460638 461564 R PFAM: dihydrodipicolinate synthetase; KEGG: pol:Bpro_3814 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(460638..461564) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053902 YP_001155254.1 CDS Pnuc_0470 NC_009379.1 461577 462506 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3811 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(461577..462506) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053352 YP_001155255.1 CDS Pnuc_0471 NC_009379.1 462592 463533 D PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: reh:H16_B1652 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 462592..463533 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053197 YP_001155256.1 CDS Pnuc_0472 NC_009379.1 463554 464759 R PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: mfa:Mfla_2622 major facilitator superfamily MFS_1; major facilitator transporter complement(463554..464759) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053067 YP_001155257.1 CDS Pnuc_0473 NC_009379.1 464803 465483 D PFAM: cytochrome B561; KEGG: azo:azo0089 conserved hypothetical hydrogenase cytochrome b-type subunit; cytochrome B561 464803..465483 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052949 YP_001155258.1 CDS Pnuc_0474 NC_009379.1 465484 465936 R PFAM: cytochrome c, class II; KEGG: pna:Pnap_0216 cytochrome c, class II; cytochrome c, class II complement(465484..465936) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052888 YP_001155259.1 CDS Pnuc_0475 NC_009379.1 466007 466726 R PFAM: peptidase M50; KEGG: aav:Aave_3710 peptidase M50; peptidase M50 complement(466007..466726) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052665 YP_001155260.1 CDS Pnuc_0476 NC_009379.1 467058 467837 D PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: eca:ECA0327 hypothetical protein; extradiol ring-cleavage dioxygenase III subunit B 467058..467837 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052659 YP_001155261.1 CDS Pnuc_0477 NC_009379.1 467849 468226 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: bte:BTH_I1520 CrcB protein; CrcB protein 467849..468226 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052647 YP_001155262.1 CDS Pnuc_0478 NC_009379.1 468249 469226 R PFAM: Uncharacterized protein UPF0065; KEGG: bpa:BPP4256 hypothetical protein; hypothetical protein complement(468249..469226) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052517 YP_001155263.1 CDS Pnuc_0479 NC_009379.1 469242 469784 R PFAM: Chromate transporter; KEGG: dar:Daro_3385 chromate transporter; chromate transporter complement(469242..469784) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052298 YP_001155264.1 CDS Pnuc_0480 NC_009379.1 469763 470299 R PFAM: Chromate transporter; KEGG: dar:Daro_3386 chromate transporter; chromate transporter complement(469763..470299) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052255 YP_001155265.1 CDS Pnuc_0481 NC_009379.1 470317 471294 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_1268 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(470317..471294) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052252 YP_001155266.1 CDS Pnuc_0482 NC_009379.1 471317 472690 R PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_1269 MmgE/PrpD; MmgE/PrpD family protein complement(471317..472690) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052036 YP_001155267.1 CDS Pnuc_0483 NC_009379.1 472738 473742 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1270 uncharacterized protein UPF0065; hypothetical protein complement(472738..473742) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054000 YP_001155268.1 CDS Pnuc_0484 NC_009379.1 473825 474607 R PFAM: Rhodanese domain protein; KEGG: reh:H16_A0899 predicted sulfurtransferase; rhodanese domain-containing protein complement(473825..474607) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052245 YP_001155269.1 CDS Pnuc_0485 NC_009379.1 474684 475685 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1056 uncharacterized protein UPF0065; hypothetical protein 474684..475685 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052360 YP_001155270.1 CDS Pnuc_0486 NC_009379.1 475695 476246 D PFAM: Carboxymuconolactone decarboxylase; KEGG: bxe:Bxe_C0965 hypothetical protein; carboxymuconolactone decarboxylase 475695..476246 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052784 YP_001155271.1 CDS Pnuc_0487 NC_009379.1 476254 477108 D PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: maq:Maqu_3553 pirin domain protein domain protein; pirin 476254..477108 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052829 YP_001155272.1 CDS Pnuc_0488 NC_009379.1 477109 478278 D PFAM: methyltransferase small; KEGG: bte:BTH_I2943 hypothetical protein; methyltransferase small 477109..478278 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052980 YP_001155273.1 CDS Pnuc_0489 NC_009379.1 478310 480166 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 TPR repeat-containing protein; hypothetical protein 478310..480166 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053241 YP_001155274.1 CDS Pnuc_0490 NC_009379.1 480665 481339 R KEGG: reh:H16_A0786 predicted phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase complement(480665..481339) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052017 YP_001155275.1 CDS Pnuc_0491 NC_009379.1 481336 482025 R KEGG: bbr:BB3475 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase complement(481336..482025) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053893 YP_001155276.1 CDS Pnuc_0492 NC_009379.1 482120 482683 R PFAM: OmpA/MotB domain protein; KEGG: ajs:Ajs_2463 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(482120..482683) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053970 YP_001155277.1 CDS Pnuc_0493 NC_009379.1 482843 485545 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 482843..485545 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052377 YP_001155278.1 CDS Pnuc_0494 NC_009379.1 485572 486669 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 485572..486669 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052454 YP_001155279.1 CDS Pnuc_0495 NC_009379.1 486669 487748 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: bxe:Bxe_A0977 bifunctional, chorismate mutase/prephenate dehydratase; chorismate mutase 486669..487748 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053588 YP_001155280.1 CDS Pnuc_0496 NC_009379.1 487798 488922 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 487798..488922 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052894 YP_001155281.1 CDS Pnuc_0497 NC_009379.1 488942 489823 D PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: reu:Reut_A2573 prephenate dehydrogenase; prephenate dehydrogenase 488942..489823 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052638 YP_001155282.1 CDS Pnuc_0498 NC_009379.1 489823 491151 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 489823..491151 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052264 YP_001155283.1 CDS cmk NC_009379.1 491156 491818 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 491156..491818 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053991 YP_001155284.1 CDS rpsA NC_009379.1 491964 493637 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 491964..493637 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052498 YP_001155285.1 CDS Pnuc_0501 NC_009379.1 493690 494034 D TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: rme:Rmet_0723 integration host factor, beta subunit; integration host factor subunit beta 493690..494034 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053846 YP_001155286.1 CDS Pnuc_0502 NC_009379.1 494095 495306 D SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_0926 tetratricopeptide domain protein; tetratricopeptide repeat protein 494095..495306 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053393 YP_001155287.1 CDS Pnuc_0503 NC_009379.1 495341 496705 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: reu:Reut_A2565 UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 495341..496705 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053331 YP_001155288.1 CDS Pnuc_0504 NC_009379.1 496683 497645 D TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: reu:Reut_A2564 RfaE bifunctional protein, domain I; rfaE bifunctional protein 496683..497645 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053473 YP_001155289.1 CDS Pnuc_0505 NC_009379.1 497642 498670 D TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: reh:H16_A0804 ADP-D-beta-D-heptose 6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 497642..498670 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053592 YP_001155290.1 CDS Pnuc_0506 NC_009379.1 498679 499419 D KEGG: dar:Daro_4102 hypothetical protein; hypothetical protein 498679..499419 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052505 YP_001155291.1 CDS Pnuc_0507 NC_009379.1 499549 499977 D PFAM: helix-hairpin-helix motif; KEGG: bam:Bamb_1783 hypothetical protein; helix-hairpin-helix DNA-binding motif-containing protein 499549..499977 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052500 YP_001155292.1 CDS Pnuc_0508 NC_009379.1 500019 500930 D TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: reh:H16_A0807 cysteine synthase; cysteine synthase B 500019..500930 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053512 YP_001155293.1 CDS Pnuc_0509 NC_009379.1 500933 502201 R TIGRFAM: lytic murein transglycosylase B; KEGG: rme:Rmet_0732 lytic murein transglycosylase B; lytic murein transglycosylase B complement(500933..502201) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052086 YP_001155294.1 CDS Pnuc_0510 NC_009379.1 502286 503206 D PFAM: histone deacetylase superfamily; KEGG: rme:Rmet_0733 histone deacetylase superfamily; histone deacetylase superfamily protein 502286..503206 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053050 YP_001155295.1 CDS Pnuc_0511 NC_009379.1 503250 504905 D PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3136 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 503250..504905 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053752 YP_001155296.1 CDS Pnuc_0512 NC_009379.1 504987 505736 D PFAM: electron transfer flavoprotein beta-subunit; KEGG: reh:H16_A0814 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 504987..505736 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052766 YP_001155297.1 CDS Pnuc_0513 NC_009379.1 505737 506672 D PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: ajs:Ajs_2809 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 505737..506672 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054014 YP_001155298.1 CDS Pnuc_0514 NC_009379.1 506733 508520 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pna:Pnap_3285 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 506733..508520 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052799 YP_001155299.1 CDS Pnuc_0515 NC_009379.1 508564 509010 R KEGG: rso:RSc0929 probable transmembrane protein; transmembrane protein complement(508564..509010) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052160 YP_001155300.1 CDS Pnuc_0516 NC_009379.1 509023 509553 R PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: rme:Rmet_2713 protein of unknown function DUF306, MetA and HslJ; hypothetical protein complement(509023..509553) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052688 YP_001155301.1 CDS rpsP NC_009379.1 509778 510023 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 509778..510023 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052035 YP_001155302.1 CDS Pnuc_0518 NC_009379.1 510115 510681 D TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: reu:Reut_A2539 16S rRNA processing protein RimM; 16S rRNA-processing protein RimM 510115..510681 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052348 YP_001155303.1 CDS trmD NC_009379.1 510699 511445 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 510699..511445 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052262 YP_001155304.1 CDS rplS NC_009379.1 511572 511961 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 511572..511961 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052816 YP_001155305.1 CDS Pnuc_0521 NC_009379.1 512025 512762 D PFAM: NUDIX hydrolase; KEGG: rme:Rmet_0752 NUDIX hydrolase; NUDIX hydrolase 512025..512762 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053330 YP_001155306.1 CDS Pnuc_0522 NC_009379.1 512759 513718 D PFAM: cobalamin biosynthesis protein CbiB; KEGG: rme:Rmet_2578 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CbiB 512759..513718 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053631 YP_001155307.1 CDS Pnuc_0523 NC_009379.1 513663 514676 R TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: reu:Reut_A0905 GTPase EngC; ribosome small subunit-dependent GTPase A complement(513663..514676) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053634 YP_001155308.1 CDS Pnuc_0524 NC_009379.1 514679 515932 R PFAM: peptidase M48, Ste24p; KEGG: bps:BPSL2482 subfamily M48A unassigned peptidase; Ste24 endopeptidase complement(514679..515932) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052014 YP_001155309.1 CDS Pnuc_0525 NC_009379.1 515948 516535 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 515948..516535 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052571 YP_001155310.1 CDS Pnuc_0526 NC_009379.1 516591 517214 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: bur:Bcep18194_A4193 molybdopterin binding protein; molybdenum cofactor synthesis domain-containing protein complement(516591..517214) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052221 YP_001155311.1 CDS Pnuc_0527 NC_009379.1 517241 518587 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rso:RSc0945 pmba protein (tldE protein); C69 family peptidase 517241..518587 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052120 YP_001155312.1 CDS Pnuc_0528 NC_009379.1 518644 519726 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rme:Rmet_3543 twin-arginine translocation pathway signal; TRAP dicarboxylate transporter- DctP subunit 518644..519726 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052299 YP_001155313.1 CDS Pnuc_0529 NC_009379.1 519840 521111 D KEGG: sme:SMa1115 manganese transport protein; manganese transport protein 519840..521111 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052504 YP_001155314.1 CDS Pnuc_0530 NC_009379.1 521137 521922 D PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_1234 protein of unknown function DUF81; hypothetical protein 521137..521922 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052496 YP_001155315.1 CDS Pnuc_0531 NC_009379.1 521919 522584 R PFAM: phospholipase/Carboxylesterase; KEGG: rfr:Rfer_1674 carboxylesterase; phospholipase/carboxylesterase complement(521919..522584) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053083 YP_001155316.1 CDS Pnuc_0532 NC_009379.1 522799 523026 D hypothetical protein 522799..523026 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052568 YP_001155317.1 CDS Pnuc_0533 NC_009379.1 523027 523401 D hypothetical protein 523027..523401 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053075 YP_001155318.1 CDS Pnuc_0534 NC_009379.1 523906 524214 D PFAM: protein of unknown function DUF485; KEGG: pna:Pnap_0484 protein of unknown function DUF485; hypothetical protein 523906..524214 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053894 YP_001155319.1 CDS Pnuc_0535 NC_009379.1 524211 525938 D TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: bur:Bcep18194_B1980 Na+/solute symporter; SSS family solute/sodium (Na+) symporter 524211..525938 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051897 YP_001155320.1 CDS Pnuc_0536 NC_009379.1 526008 526664 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(526008..526664) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052108 YP_001155321.1 CDS Pnuc_0537 NC_009379.1 526661 528490 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: pna:Pnap_0480 cyclic nucleotide-binding protein; hypothetical protein complement(526661..528490) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053194 YP_001155322.1 CDS Pnuc_0538 NC_009379.1 528595 529392 R KEGG: chu:CHU_0221 hypothetical protein; hypothetical protein complement(528595..529392) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051892 YP_001155323.1 CDS Pnuc_0539 NC_009379.1 529470 530348 R PFAM: HpcH/HpaI aldolase; KEGG: ade:Adeh_0181 citryl-CoA lyase; citryl-CoA lyase complement(529470..530348) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052250 YP_001155324.1 CDS Pnuc_0540 NC_009379.1 530493 533180 R PFAM: GCN5-related N-acetyltransferase; KEGG: pna:Pnap_0056 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(530493..533180) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052796 YP_001155325.1 CDS Pnuc_0541 NC_009379.1 533585 534193 D PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: mfa:Mfla_0507 glutathione S-transferase-like protein; glutathione S-transferase domain-containing protein 533585..534193 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053603 YP_001155326.1 CDS Pnuc_0542 NC_009379.1 534279 534749 D KEGG: cps:CPS_2500 lipoprotein; hypothetical protein 534279..534749 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053746 YP_001155327.1 CDS Pnuc_0543 NC_009379.1 534811 535731 D KEGG: rha:RHA1_ro06278 possible protein-tyrosine phosphatase; protein tyrosine/serine phosphatase 534811..535731 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052879 YP_001155328.1 CDS Pnuc_0544 NC_009379.1 535807 536184 D hypothetical protein 535807..536184 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052511 YP_001155329.1 CDS Pnuc_0545 NC_009379.1 536303 537730 D KEGG: rfr:Rfer_0914 cytochrome c1 signal peptide protein; cytochrome c1 signal peptide protein 536303..537730 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053073 YP_001155330.1 CDS Pnuc_0546 NC_009379.1 537748 538497 D PFAM: cytochrome c, class I; KEGG: rfr:Rfer_0913 cytochrome c, class I; cytochrome c, class I 537748..538497 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052885 YP_001155331.1 CDS Pnuc_0547 NC_009379.1 538550 539269 R KEGG: bte:BTH_I2045 phytochelatin synthase; phytochelatin synthase complement(538550..539269) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053528 YP_001155332.1 CDS Pnuc_0548 NC_009379.1 539411 539968 D KEGG: mlo:mll4938 hypothetical protein; hypothetical protein 539411..539968 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052634 YP_001155333.1 CDS Pnuc_0549 NC_009379.1 540045 540578 D KEGG: mbb:BCG_3103 hydroxylaminobenzene mutase hab; hypothetical protein 540045..540578 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053698 YP_001155334.1 CDS Pnuc_0550 NC_009379.1 540684 541982 D PFAM: secretory lipase; KEGG: mes:Meso_1425 secretory lipase; secretory lipase 540684..541982 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051939 YP_001155335.1 CDS Pnuc_0551 NC_009379.1 542060 542494 R PFAM: protein of unknown function DUF336; KEGG: ppu:PP_3193 hypothetical protein; hypothetical protein complement(542060..542494) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053621 YP_001155336.1 CDS Pnuc_0552 NC_009379.1 542685 543998 D PFAM: Cl- channel, voltage-gated family protein; KEGG: mkm:Mkms_4266 Cl-channel, voltage-gated family protein; Cl- channel voltage-gated family protein 542685..543998 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052132 YP_001155337.1 CDS Pnuc_0553 NC_009379.1 544093 545823 D PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: pae:PA5297 pyruvate dehydrogenase (cytochrome); thiamine pyrophosphate binding domain-containing protein 544093..545823 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053946 YP_001155338.1 CDS Pnuc_0554 NC_009379.1 546274 546594 D hypothetical protein 546274..546594 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053177 YP_001155339.1 CDS Pnuc_0555 NC_009379.1 546612 547835 R PFAM: cytochrome c, class I; KEGG: bam:Bamb_2722 cytochrome c, class I; cytochrome c, class I complement(546612..547835) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052481 YP_001155340.1 CDS Pnuc_0556 NC_009379.1 547934 548371 D PFAM: DoxX family protein; KEGG: pen:PSEEN2275 hypothetical protein; DoxX family protein 547934..548371 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053971 YP_001155341.1 CDS Pnuc_0557 NC_009379.1 548422 548826 D hypothetical protein 548422..548826 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054005 YP_001155342.1 CDS Pnuc_0558 NC_009379.1 549480 549914 R hypothetical protein complement(549480..549914) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053192 YP_001155343.1 CDS Pnuc_0559 NC_009379.1 550161 550904 D KEGG: rle:pRL110227 transmembrane protein; transmembrane protein 550161..550904 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053482 YP_001155344.1 CDS Pnuc_0560 NC_009379.1 550908 551120 D hypothetical protein 550908..551120 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053883 YP_001155345.1 CDS Pnuc_0561 NC_009379.1 551164 551541 R hypothetical protein complement(551164..551541) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053912 YP_001155346.1 CDS Pnuc_0562 NC_009379.1 552152 552859 R hypothetical protein complement(552152..552859) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052780 YP_001155347.1 CDS Pnuc_0563 NC_009379.1 552863 554638 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pna:Pnap_2688 integral membrane sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase complement(552863..554638) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053749 YP_001155348.1 CDS Pnuc_0564 NC_009379.1 554642 555235 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pat:Patl_0522 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(554642..555235) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052088 YP_001155349.1 CDS Pnuc_0565 NC_009379.1 555476 555850 D hypothetical protein 555476..555850 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053939 YP_001155350.1 CDS Pnuc_0566 NC_009379.1 555893 556234 D KEGG: rso:RSp1129 arsenical resistance operon repressor transcription regulator protein; hypothetical protein 555893..556234 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052899 YP_001155351.1 CDS Pnuc_0567 NC_009379.1 556249 556599 R KEGG: eba:ebB231 hypothetical protein; hypothetical protein complement(556249..556599) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052892 YP_001155352.1 CDS Pnuc_0568 NC_009379.1 556608 558014 R KEGG: sco:SCO6331 hypothetical protein; hypothetical protein complement(556608..558014) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053910 YP_001155353.1 CDS Pnuc_0569 NC_009379.1 558101 559102 R PFAM: GCN5-related N-acetyltransferase; KEGG: rpe:RPE_3904 anti-sigma regulatory factor, serine/threonine protein kinase; N-acetyltransferase GCN5 complement(558101..559102) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053950 YP_001155354.1 CDS Pnuc_0570 NC_009379.1 559406 560302 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_0496 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 559406..560302 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052417 YP_001155355.1 CDS Pnuc_0571 NC_009379.1 560317 561189 R PFAM: beta-lactamase domain protein; KEGG: reh:H16_A1980 hydroxyacylglutathione hydrolase; beta-lactamase domain-containing protein complement(560317..561189) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052534 YP_001155356.1 CDS Pnuc_0572 NC_009379.1 561331 561963 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mca:MCA0486 hypothetical protein; methyltransferase type 11 complement(561331..561963) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052744 YP_001155357.1 CDS Pnuc_0573 NC_009379.1 562389 563072 D PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: sus:Acid_4064 multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 562389..563072 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052868 YP_001155358.1 CDS Pnuc_0575 NC_009379.1 564209 565303 D PFAM: Choloylglycine hydrolase; KEGG: stt:t1459 secreted hydrolase; choloylglycine hydrolase 564209..565303 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052792 YP_001155359.1 CDS Pnuc_0576 NC_009379.1 565656 566438 D KEGG: gbe:GbCGDNIH1_1333 hypothetical protein; hypothetical protein 565656..566438 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053416 YP_001155360.1 CDS Pnuc_0578 NC_009379.1 566657 568294 R PFAM: Amidohydrolase 3; KEGG: mul:MUL_0894 metal-dependent hydrolase; amidohydrolase complement(566657..568294) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052708 YP_001155361.1 CDS Pnuc_0579 NC_009379.1 568314 569150 R KEGG: rle:pRL110217 hypothetical protein; hypothetical protein complement(568314..569150) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053934 YP_001155362.1 CDS Pnuc_0580 NC_009379.1 569312 569791 D hypothetical protein 569312..569791 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052174 YP_001155363.1 CDS Pnuc_0581 NC_009379.1 570029 570331 R hypothetical protein complement(570029..570331) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052944 YP_001155364.1 CDS Pnuc_0582 NC_009379.1 570332 571000 R KEGG: dar:Daro_1872 hypothetical protein; hypothetical protein complement(570332..571000) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052455 YP_001155365.1 CDS Pnuc_0583 NC_009379.1 571145 571585 D KEGG: azo:azo0274 conserved hypothetical secreted protein; hypothetical protein 571145..571585 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052487 YP_001155366.1 CDS Pnuc_0584 NC_009379.1 571594 572166 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: azo:azo0273 ECF-family RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 571594..572166 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053023 YP_001155367.1 CDS Pnuc_0585 NC_009379.1 572144 572458 D hypothetical protein 572144..572458 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053154 YP_001155368.1 CDS Pnuc_0586 NC_009379.1 573052 573255 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: dar:Daro_1388 cold-shock protein, DNA-binding; cold-shock DNA-binding domain-containing protein 573052..573255 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053287 YP_001155369.1 CDS Pnuc_0587 NC_009379.1 573341 573601 D TIGRFAM: translation initiation factor IF-1; PFAM: S1, IF1 family protein; KEGG: pna:Pnap_0981 translation initiation factor IF-1; translation initiation factor IF-1 573341..573601 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053451 YP_001155370.1 CDS Pnuc_0588 NC_009379.1 574169 574906 D hypothetical protein 574169..574906 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052129 YP_001155371.1 CDS Pnuc_0589 NC_009379.1 574917 575669 D hypothetical protein 574917..575669 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052068 YP_001155372.1 CDS Pnuc_0590 NC_009379.1 575942 576139 R hypothetical protein complement(575942..576139) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052526 YP_001155373.1 CDS Pnuc_0591 NC_009379.1 576142 576660 R KEGG: eba:ebA2161 hypothetical protein; hypothetical protein complement(576142..576660) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053924 YP_001155374.1 CDS Pnuc_0592 NC_009379.1 577031 578011 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mta:Moth_1954 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(577031..578011) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052019 YP_001155375.1 CDS Pnuc_0593 NC_009379.1 578094 579035 R transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease complement(578094..579035) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053247 YP_001155376.1 CDS Pnuc_0594 NC_009379.1 579331 580230 D KEGG: pol:Bpro_4563 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 579331..580230 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052008 YP_001155377.1 CDS Pnuc_0595 NC_009379.1 580610 581956 R PFAM: cell wall hydrolase/autolysin; KEGG: reh:H16_A0597 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(580610..581956) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052736 YP_001155378.1 CDS Pnuc_0596 NC_009379.1 581960 582490 R PFAM: protein of unknown function UPF0079; KEGG: cvi:CV3821 hypothetical protein; hypothetical protein complement(581960..582490) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053979 YP_001155379.1 CDS Pnuc_0597 NC_009379.1 582533 583627 D TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: rme:Rmet_0524 4Fe-4S cluster binding; iron-sulfur cluster binding protein 582533..583627 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053771 YP_001155380.1 CDS Pnuc_0598 NC_009379.1 583670 584455 D PFAM: AzlC family protein; KEGG: pub:SAR11_1356 hypothetical protein; AzlC family protein 583670..584455 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053767 YP_001155381.1 CDS Pnuc_0599 NC_009379.1 584455 584805 D KEGG: atc:AGR_C_2526 hypothetical protein; hypothetical protein 584455..584805 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053489 YP_001155382.1 CDS Pnuc_0600 NC_009379.1 584847 587924 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: pol:Bpro_2755 D-lactate dehydrogenase (cytochrome); FAD linked oxidase domain-containing protein complement(584847..587924) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053993 YP_001155383.1 CDS Pnuc_0601 NC_009379.1 587921 588604 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2754 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(587921..588604) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052660 YP_001155384.1 CDS Pnuc_0602 NC_009379.1 588807 589991 D PFAM: aminotransferase, class V; KEGG: reh:H16_B1170 aminotransferase class-V; serine--glyoxylate transaminase 588807..589991 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052644 YP_001155385.1 CDS Pnuc_0603 NC_009379.1 590124 590531 D PFAM: protein of unknown function DUF336; KEGG: rso:RSc1967 probable GlcG protein; hypothetical protein 590124..590531 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052260 YP_001155386.1 CDS Pnuc_0604 NC_009379.1 590538 591959 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: reh:H16_A2717 ATP-dependent helicase, superfamily II DNA and RNA helicase; DEAD/DEAH box helicase 590538..591959 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052866 YP_001155387.1 CDS Pnuc_0605 NC_009379.1 591970 592920 R PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: mpt:Mpe_A2900 glutamate--tRNA ligase; glutamate--tRNA ligase complement(591970..592920) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052880 YP_001155388.1 CDS Pnuc_0606 NC_009379.1 592924 596538 D KEGG: reu:Reut_A2534 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 592924..596538 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053873 YP_001155389.1 CDS Pnuc_0607 NC_009379.1 596560 597720 R PFAM: glycosyl transferase, family 9; KEGG: bte:BTH_I0990 lipopolysaccharide core biosynthesis heptosyltransferase; glycosyl transferase family protein complement(596560..597720) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051896 YP_001155390.1 CDS Pnuc_0608 NC_009379.1 597723 598511 R PFAM: glycosyl transferase, family 2; KEGG: pna:Pnap_2051 glycosyl transferase, family 2; glycosyl transferase family protein complement(597723..598511) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052633 YP_001155391.1 CDS Pnuc_0609 NC_009379.1 598508 599269 R PFAM: glycosyl transferase, family 2; KEGG: rme:Rmet_0756 glycosyl transferase, family 2; glycosyl transferase family protein complement(598508..599269) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053977 YP_001155392.1 CDS Pnuc_0610 NC_009379.1 599280 601043 D KEGG: rme:Rmet_0757 lipid A export ATP-binding/permease MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 599280..601043 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053944 YP_001155393.1 CDS Pnuc_0611 NC_009379.1 601068 602531 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: reu:Reut_A2529 ribonuclease E and G; ribonuclease complement(601068..602531) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053238 YP_001155394.1 CDS Pnuc_0612 NC_009379.1 602528 603154 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bpm:BURPS1710b_1378 septum formation protein Maf; maf protein complement(602528..603154) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052597 YP_001155395.1 CDS Pnuc_0613 NC_009379.1 603147 603590 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(603147..603590) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053198 YP_001155396.1 CDS Pnuc_0614 NC_009379.1 603621 604010 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: rme:Rmet_0781 iojap-related protein; iojap family protein complement(603621..604010) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052393 YP_001155397.1 CDS Pnuc_0615 NC_009379.1 604058 604747 R KEGG: reu:Reut_A2525 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(604058..604747) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052424 YP_001155398.1 CDS Pnuc_0616 NC_009379.1 604744 605676 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(604744..605676) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052556 YP_001155399.1 CDS Pnuc_0617 NC_009379.1 605692 606969 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(605692..606969) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052567 YP_001155400.1 CDS Pnuc_0618 NC_009379.1 606999 607718 R PFAM: protein of unknown function DUF28; KEGG: reh:H16_A0916 hypothetical protein; hypothetical protein complement(606999..607718) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052743 YP_001155401.1 CDS Pnuc_0619 NC_009379.1 608060 608872 D KEGG: bxe:Bxe_A0057 hypothetical protein; hypothetical protein 608060..608872 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052873 YP_001155402.1 CDS Pnuc_0620 NC_009379.1 608903 609844 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_2818 transcriptional regulator, LysR family; transcriptional regulator CysB-like protein complement(608903..609844) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052871 YP_001155403.1 CDS Pnuc_0621 NC_009379.1 609908 611062 R PFAM: permease YjgP/YjgQ family protein; KEGG: bps:BPSL0963 permease; YjgP/YjgQ family permease complement(609908..611062) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052924 YP_001155404.1 CDS Pnuc_0622 NC_009379.1 611059 612174 R PFAM: permease YjgP/YjgQ family protein; KEGG: rme:Rmet_2808 permease YjgP/YjgQ; YjgP/YjgQ family permease complement(611059..612174) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053009 YP_001155405.1 CDS Pnuc_0623 NC_009379.1 612335 613945 D PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: reu:Reut_A2683 leucyl aminopeptidase; leucyl aminopeptidase 612335..613945 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053045 YP_001155406.1 CDS Pnuc_0624 NC_009379.1 613949 614416 D PFAM: DNA polymerase III chi subunit, HolC; KEGG: rso:RSc2414 probable DNA polymerase III (chi subunit) protein; DNA polymerase III chi subunit, HolC 613949..614416 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053253 YP_001155407.1 CDS Pnuc_0625 NC_009379.1 614445 615230 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 614445..615230 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053983 YP_001155408.1 CDS Pnuc_0626 NC_009379.1 615242 616150 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pna:Pnap_0955 transcriptional regulator, LysR family; LysR family transcriptional regulator 615242..616150 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052673 YP_001155409.1 CDS Pnuc_0627 NC_009379.1 616283 617587 D PFAM: Malonyl-CoA decarboxylase; KEGG: sme:SMa0151 hypothetical protein; malonyl-CoA decarboxylase 616283..617587 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052817 YP_001155410.1 CDS Pnuc_0628 NC_009379.1 617727 618761 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpa:RPA2543 TrapT family, DctP subunit, C4-dicarboxylate periplasmic binding protein; TRAP dicarboxylate transporter- DctP subunit 617727..618761 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053505 YP_001155411.1 CDS Pnuc_0629 NC_009379.1 618793 619281 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rpa:RPA2542 possible TrapT family, DctQ subunit, C4-dicarboxylate transport; tripartite ATP-independent periplasmic transporter DctQ 618793..619281 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053636 YP_001155412.1 CDS Pnuc_0630 NC_009379.1 619283 620635 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_2527 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter, DctM subunit 619283..620635 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053775 YP_001155413.1 CDS Pnuc_0631 NC_009379.1 620660 622183 D catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 620660..622183 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052804 YP_001155414.1 CDS Pnuc_0632 NC_009379.1 622184 623002 R PFAM: protein of unknown function DUF81; KEGG: reh:H16_A2976 predicted permease; hypothetical protein complement(622184..623002) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053774 YP_001155415.1 CDS Pnuc_0633 NC_009379.1 623183 623542 R KEGG: reu:Reut_A0652 protein of unknown function DUF710; hypothetical protein complement(623183..623542) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052961 YP_001155416.1 CDS Pnuc_0634 NC_009379.1 623517 623804 R KEGG: reh:H16_A2973 hypothetical protein; hypothetical protein complement(623517..623804) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053743 YP_001155417.1 CDS Pnuc_0635 NC_009379.1 623928 626048 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: dar:Daro_4030 TonB-dependent receptor:lipocalin; TonB-dependent receptor, plug complement(623928..626048) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053730 YP_001155418.1 CDS Pnuc_0636 NC_009379.1 626489 627106 D PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_2799 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein 626489..627106 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052288 YP_001155419.1 CDS Pnuc_0637 NC_009379.1 627311 629020 D catalyzes the formation of formyl-CoA from oxalyl-CoA; oxalyl-CoA decarboxylase 627311..629020 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052404 YP_001155420.1 CDS Pnuc_0638 NC_009379.1 629093 630343 D catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase 629093..630343 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053016 YP_001155421.1 CDS Pnuc_0639 NC_009379.1 630445 630873 D KEGG: reu:Reut_B4662 PAS; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein 630445..630873 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053161 YP_001155422.1 CDS Pnuc_0640 NC_009379.1 631001 632248 D catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase 631001..632248 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053552 YP_001155423.1 CDS Pnuc_0641 NC_009379.1 632250 633182 D PFAM: formyl transferase domain protein; KEGG: cfa:474534 similar to aldehyde dehydrogenase 1 family, member L2; methionyl-tRNA formyltransferase 632250..633182 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053840 YP_001155424.1 CDS Pnuc_0642 NC_009379.1 633370 633645 R hypothetical protein complement(633370..633645) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052353 YP_001155425.1 CDS Pnuc_0643 NC_009379.1 633860 635002 D PFAM: Choloylglycine hydrolase; KEGG: stt:t1459 secreted hydrolase; choloylglycine hydrolase 633860..635002 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053120 YP_001155426.1 CDS panC NC_009379.1 635108 635959 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(635108..635959) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052981 YP_001155427.1 CDS Pnuc_0645 NC_009379.1 635956 636819 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: rme:Rmet_2773 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA complement(635956..636819) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053235 YP_001155428.1 CDS Pnuc_0646 NC_009379.1 636812 637000 R KEGG: reu:Reut_A0670 hypothetical protein; hypothetical protein complement(636812..637000) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053230 YP_001155429.1 CDS Pnuc_0647 NC_009379.1 637105 638775 R TIGRFAM: methionyl-tRNA synthetase; PFAM: methionyl-tRNA synthetase, class Ia; KEGG: rso:RSc2381 probable methionyl-tRNA synthetase; methionyl-tRNA synthetase complement(637105..638775) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052856 YP_001155430.1 CDS Pnuc_0648 NC_009379.1 638919 639749 D PFAM: formate dehydrogenase, subunit FdhD; KEGG: reh:H16_A2932 protein required for formate dehydrogenase activity; formate dehydrogenase subunit FdhD 638919..639749 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053516 YP_001155431.1 CDS dcd NC_009379.1 639802 640368 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 639802..640368 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052214 YP_001155432.1 CDS Pnuc_0650 NC_009379.1 640382 641296 D PFAM: Ion transport 2 domain protein, ; K+ channel, inward rectifier, conserved region 2 domain protein; KEGG: mag:amb1660 ATP-sensitive inward rectifier potassium channel 10; K+ channel inward rectifier domain-containing protein 640382..641296 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053885 YP_001155433.1 CDS Pnuc_0651 NC_009379.1 641293 643560 D PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: mfa:Mfla_1059 lysine decarboxylase; lysine decarboxylase 641293..643560 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052519 YP_001155434.1 CDS Pnuc_0652 NC_009379.1 643577 643939 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 643577..643939 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052130 YP_001155435.1 CDS Pnuc_0653 NC_009379.1 643953 645485 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rme:Rmet_2753 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter, DctM subunit complement(643953..645485) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053901 YP_001155436.1 CDS Pnuc_0654 NC_009379.1 645482 646033 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: reu:Reut_A0694 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(645482..646033) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053763 YP_001155437.1 CDS Pnuc_0655 NC_009379.1 646039 647457 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(646039..647457) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053487 YP_001155438.1 CDS Pnuc_0656 NC_009379.1 647501 648478 D KEGG: bur:Bcep18194_A5752 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 647501..648478 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053185 YP_001155439.1 CDS Pnuc_0657 NC_009379.1 648502 649326 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: bxe:Bxe_A3410 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 648502..649326 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053178 YP_001155440.1 CDS Pnuc_0658 NC_009379.1 649319 649894 R PFAM: Chorismate lyase; KEGG: azo:azo0478 chorismate:pyruvate lyase; chorismate lyase complement(649319..649894) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052667 YP_001155441.1 CDS Pnuc_0659 NC_009379.1 649897 651399 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mpt:Mpe_A2918 ATP-dependent RNA helicase; DEAD/DEAH box helicase complement(649897..651399) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053757 YP_001155442.1 CDS Pnuc_0660 NC_009379.1 651642 652322 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rme:Rmet_2194 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 651642..652322 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053495 YP_001155443.1 CDS Pnuc_0661 NC_009379.1 652341 653738 R PFAM: aldehyde dehydrogenase; KEGG: pna:Pnap_2218 aldehyde dehydrogenase; aldehyde dehydrogenase complement(652341..653738) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052589 YP_001155444.1 CDS Pnuc_0662 NC_009379.1 653788 654360 D TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: mpt:Mpe_A2934 methionine-S-oxide reductase; peptide methionine sulfoxide reductase 653788..654360 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051964 YP_001155445.1 CDS Pnuc_0663 NC_009379.1 654373 655008 R KEGG: reh:H16_A2802 pyridoxamine-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase complement(654373..655008) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052105 YP_001155446.1 CDS Pnuc_0664 NC_009379.1 655031 655810 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rme:Rmet_2639 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein 655031..655810 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053646 YP_001155447.1 CDS Pnuc_0665 NC_009379.1 656046 657425 D PFAM: amino acid permease-associated region; KEGG: ppu:PP_1059 amino acid permease; amino acid permease-associated region 656046..657425 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053929 YP_001155448.1 CDS Pnuc_0666 NC_009379.1 657438 658556 D TIGRFAM: alanine dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: rfr:Rfer_4054 alanine dehydrogenase; alanine dehydrogenase 657438..658556 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053061 YP_001155449.1 CDS Pnuc_0667 NC_009379.1 658657 659232 D PFAM: protein of unknown function UPF0016; KEGG: rso:RSc2100 probable transmembrane protein; hypothetical protein 658657..659232 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053236 YP_001155450.1 CDS pepN NC_009379.1 659278 661887 D TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: reu:Reut_A2443 peptidase M, neutral zinc metallopeptidases, zinc-binding site; aminopeptidase 659278..661887 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052364 YP_001155451.1 CDS Pnuc_0669 NC_009379.1 661969 662976 D PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: aav:Aave_1843 inositol phosphatase/fructose-1,6-bisphosphatase; inositol phosphatase/fructose-1,6-bisphosphatase 661969..662976 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052827 YP_001155452.1 CDS Pnuc_0670 NC_009379.1 663065 665635 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(663065..665635) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052903 YP_001155453.1 CDS Pnuc_0671 NC_009379.1 665636 667828 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(665636..667828) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052983 YP_001155454.1 CDS Pnuc_0672 NC_009379.1 668030 670363 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_0705 ABC transporter-related protein; ABC transporter 668030..670363 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053104 YP_001155455.1 CDS Pnuc_0673 NC_009379.1 670360 670833 D KEGG: reh:H16_A0777 hypothetical protein; hypothetical protein 670360..670833 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053246 YP_001155456.1 CDS Pnuc_0674 NC_009379.1 671673 672926 D PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B4656 major facilitator superfamily MFS_1; major facilitator transporter 671673..672926 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052964 YP_001155457.1 CDS Pnuc_0675 NC_009379.1 673096 673413 D KEGG: azo:azo2157 conserved hypothetical secreted protein; hypothetical protein 673096..673413 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053726 YP_001155458.1 CDS Pnuc_0676 NC_009379.1 673488 675686 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: mxa:MXAN_6716 TonB dependent receptor; TonB-dependent receptor 673488..675686 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053791 YP_001155459.1 CDS Pnuc_0677 NC_009379.1 675686 676939 D KEGG: nwi:Nwi_2903 glycosyl hydrolase, BNR repeat; BNR repeat-containing glycosyl hydrolase 675686..676939 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053787 YP_001155460.1 CDS Pnuc_0678 NC_009379.1 676936 677412 D PFAM: Redoxin domain protein; KEGG: nwi:Nwi_2904 possible signal peptide protein; redoxin domain-containing protein 676936..677412 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053090 YP_001155461.1 CDS Pnuc_0679 NC_009379.1 677444 677896 D PFAM: protein of unknown function DUF461; KEGG: pde:Pden_4444 protein of unknown function DUF461; hypothetical protein 677444..677896 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052267 YP_001155462.1 CDS Pnuc_0680 NC_009379.1 677955 679649 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(677955..679649) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052354 YP_001155463.1 CDS Pnuc_0681 NC_009379.1 679946 680509 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sfu:Sfum_0582 two component transcriptional regulator, LuxR family; response regulator receiver protein 679946..680509 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052603 YP_001155464.1 CDS Pnuc_0682 NC_009379.1 680590 681594 D hypothetical protein 680590..681594 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052194 YP_001155465.1 CDS Pnuc_0683 NC_009379.1 681625 681963 R PFAM: nitrogen regulatory protein P-II; KEGG: mfa:Mfla_1885 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II complement(681625..681963) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052224 YP_001155466.1 CDS Pnuc_0684 NC_009379.1 682034 683653 R KEGG: rso:RSc2347 NAD(+) synthase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; NAD+ synthetase complement(682034..683653) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052434 YP_001155467.1 CDS Pnuc_0685 NC_009379.1 683691 684227 R PFAM: Inorganic pyrophosphatase; KEGG: pol:Bpro_2300 inorganic diphosphatase; inorganic diphosphatase complement(683691..684227) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052554 YP_001155468.1 CDS hppA NC_009379.1 684400 686460 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 684400..686460 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052857 YP_001155469.1 CDS Pnuc_0687 NC_009379.1 686848 687081 D KEGG: eba:ebD16 hypothetical protein; hypothetical protein 686848..687081 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052921 YP_001155470.1 CDS Pnuc_0688 NC_009379.1 687081 687479 D PFAM: PilT protein domain protein; SMART: Nucleotide binding protein, PINc; KEGG: cch:Cag_1325 nucleic acid-binding protein,contains PIN domain; twitching motility protein PilT 687081..687479 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053157 YP_001155471.1 CDS Pnuc_0689 NC_009379.1 687547 688503 R KEGG: bpm:BURPS1710b_3078 thioredoxin-disulfide reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase complement(687547..688503) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053273 YP_001155472.1 CDS Pnuc_0690 NC_009379.1 688543 690855 D PFAM: cell divisionFtsK/SpoIIIE; KEGG: rso:RSc2341 probable cell division ftsk transmembrane protein; cell division protein FtsK 688543..690855 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053433 YP_001155473.1 CDS Pnuc_0691 NC_009379.1 690865 691548 D PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: bpm:BURPS1710b_3076 outer-membrane lipoprotein carrier protein precursor; outer membrane lipoprotein carrier protein LolA 690865..691548 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053458 YP_001155474.1 CDS Pnuc_0692 NC_009379.1 691595 692905 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 691595..692905 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053662 YP_001155475.1 CDS Pnuc_0693 NC_009379.1 692902 693324 R PFAM: PilT protein domain protein; KEGG: gox:GOX1501 hypothetical protein; twitching motility protein PilT complement(692902..693324) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053803 YP_001155476.1 CDS Pnuc_0694 NC_009379.1 693324 693569 R PFAM: SpoVT/AbrB domain protein; KEGG: rso:RSc3056 hypothetical protein; transcriptional regulator/antitoxin MazE complement(693324..693569) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053784 YP_001155477.1 CDS Pnuc_0695 NC_009379.1 693917 695755 D KEGG: mfa:Mfla_1097 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 693917..695755 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053456 YP_001155478.1 CDS Pnuc_0696 NC_009379.1 695949 697283 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sus:Acid_5787 amidohydrolase; amidohydrolase 695949..697283 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052965 YP_001155479.1 CDS Pnuc_0697 NC_009379.1 697496 698500 D PFAM: Choloylglycine hydrolase; KEGG: syg:sync_1125 choloylglycine hydrolase; choloylglycine hydrolase 697496..698500 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052677 YP_001155480.1 CDS Pnuc_0698 NC_009379.1 698571 699077 D hypothetical protein 698571..699077 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052349 YP_001155481.1 CDS Pnuc_0699 NC_009379.1 699066 699722 R PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: vei:Veis_3657 DNA exonuclease X; exonuclease complement(699066..699722) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052337 YP_001155482.1 CDS Pnuc_0700 NC_009379.1 700148 701809 D KEGG: rme:Rmet_2129 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 700148..701809 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053806 YP_001155483.1 CDS Pnuc_0701 NC_009379.1 701874 702197 D PFAM: conserved hypothetical protein 103; KEGG: azo:azo0958 conserved hypothetical protein; hypothetical protein 701874..702197 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052171 YP_001155484.1 CDS recR NC_009379.1 702197 702811 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 702197..702811 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052096 YP_001155485.1 CDS Pnuc_0703 NC_009379.1 703034 704449 D PFAM: Carbohydrate-selective porin OprB; KEGG: dar:Daro_3545 OmpA-like transmembrane domain; carbohydrate-selective porin OprB 703034..704449 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052168 YP_001155486.1 CDS Pnuc_0704 NC_009379.1 704586 705077 D PFAM: peptidase S24, S26A and S26B; KEGG: syf:Synpcc7942_1549 DNA polymerase V; prophage repressor 704586..705077 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052643 YP_001155487.1 CDS Pnuc_0705 NC_009379.1 705052 706404 D PFAM: UMUC domain protein DNA-repair protein; KEGG: eba:p2A244 DNA repair protein; DNA-directed DNA polymerase 705052..706404 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052579 YP_001155488.1 CDS Pnuc_0706 NC_009379.1 706731 707309 D PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: reu:Reut_A3140 hypothetical protein; ferric reductase domain-containing protein 706731..707309 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052368 YP_001155489.1 CDS Pnuc_0707 NC_009379.1 707349 707612 D hypothetical protein 707349..707612 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052830 YP_001155490.1 CDS Pnuc_0708 NC_009379.1 707636 708415 R hypothetical protein complement(707636..708415) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053721 YP_001155491.1 CDS Pnuc_0709 NC_009379.1 708639 708857 D PFAM: protein of unknown function DUF465; KEGG: pna:Pnap_4690 protein of unknown function DUF465; hypothetical protein 708639..708857 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053585 YP_001155492.1 CDS Pnuc_0710 NC_009379.1 708862 709209 R TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; KEGG: bpm:BURPS1710b_0482 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization protein PhnA complement(708862..709209) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053740 YP_001155493.1 CDS Pnuc_0711 NC_009379.1 709318 711147 D PFAM: AsmA family protein; KEGG: rru:Rru_A2657 AsmA; AsmA family protein 709318..711147 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052860 YP_001155494.1 CDS Pnuc_0712 NC_009379.1 711177 711524 R PFAM: membrane protein of unknown function; KEGG: dar:Daro_1075 membrane protein of unknown function; membrane protein complement(711177..711524) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052620 YP_001155495.1 CDS Pnuc_0713 NC_009379.1 711586 711798 R PFAM: SlyX family protein; KEGG: dar:Daro_2678 SlyX; SlyX family protein complement(711586..711798) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052445 YP_001155496.1 CDS Pnuc_0714 NC_009379.1 712046 713053 D PFAM: luciferase family protein; KEGG: mxa:MXAN_5094 luciferase-like monooxygenase family protein; luciferase family protein 712046..713053 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053310 YP_001155497.1 CDS Pnuc_0715 NC_009379.1 713050 713466 R KEGG: tbd:Tbd_2605 protein of unknown function DUF132; hypothetical protein complement(713050..713466) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052920 YP_001155498.1 CDS Pnuc_0716 NC_009379.1 713478 714026 R PFAM: YaeQ family protein; KEGG: bbr:BB2522 hypothetical protein; YaeQ family protein complement(713478..714026) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052549 YP_001155499.1 CDS Pnuc_0717 NC_009379.1 714127 715740 D PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: azo:azo1913 conserved hypothetical protein; FAD dependent oxidoreductase 714127..715740 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052428 YP_001155500.1 CDS Pnuc_0718 NC_009379.1 715767 717182 D KEGG: azo:azo1352 coproporphyrinogen oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 715767..717182 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053823 YP_001155501.1 CDS Pnuc_0719 NC_009379.1 717350 717994 D PFAM: OmpW family protein; KEGG: rpb:RPB_4324 OmpW; OmpW family protein 717350..717994 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053678 YP_001155502.1 CDS Pnuc_0720 NC_009379.1 718057 718653 R KEGG: rme:Rmet_2638 ATP-ase; ATPase complement(718057..718653) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053546 YP_001155503.1 CDS Pnuc_0721 NC_009379.1 718721 720643 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0181 ferric-enterobactin ABC transporter ATPase; ABC transporter 718721..720643 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053118 YP_001155504.1 CDS Pnuc_0722 NC_009379.1 720660 720965 R KEGG: bxe:Bxe_B2344 hypothetical protein; hypothetical protein complement(720660..720965) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052286 YP_001155505.1 CDS Pnuc_0723 NC_009379.1 720970 721950 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: bxe:Bxe_B2345 DnaJ chaperone protein; molecular chaperone DnaJ complement(720970..721950) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052862 YP_001155506.1 CDS Pnuc_0724 NC_009379.1 722009 723556 R PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: reu:Reut_B4278 altronate dehydratase; altronate dehydratase complement(722009..723556) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053722 YP_001155507.1 CDS Pnuc_0725 NC_009379.1 723609 724310 R PFAM: Pirin domain protein domain protein; KEGG: pna:Pnap_2931 pirin domain protein domain protein; pirin complement(723609..724310) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053555 YP_001155508.1 CDS Pnuc_0726 NC_009379.1 724392 725804 D KEGG: dar:Daro_0549 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 724392..725804 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052926 YP_001155509.1 CDS Pnuc_0727 NC_009379.1 725808 726266 R PFAM: phosphate-starvation-inducible E; KEGG: psb:Psyr_1034 phosphate-starvation-inducible E; phosphate-starvation-inducible E complement(725808..726266) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052608 YP_001155510.1 CDS Pnuc_0728 NC_009379.1 726371 727645 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mpt:Mpe_A2429 sulfide dehydrogenase flavocytochrome c oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(726371..727645) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052210 YP_001155511.1 CDS Pnuc_0729 NC_009379.1 727660 727992 R KEGG: rme:Rmet_3427 cytochrome c, class I; hypothetical protein complement(727660..727992) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053862 YP_001155512.1 CDS Pnuc_0730 NC_009379.1 728008 730134 R PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: bpm:BURPS1710b_2750 oligopeptidase A; oligopeptidase A complement(728008..730134) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053431 YP_001155513.1 CDS Pnuc_0731 NC_009379.1 730188 731042 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(730188..731042) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052998 YP_001155514.1 CDS Pnuc_0732 NC_009379.1 731062 731709 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rme:Rmet_1194 two component transcriptional regulator, LuxR family; response regulator receiver protein complement(731062..731709) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052463 YP_001155515.1 CDS Pnuc_0733 NC_009379.1 731746 734283 R KEGG: reu:Reut_A1302 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(731746..734283) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052241 YP_001155516.1 CDS aceE NC_009379.1 734477 737173 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 734477..737173 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053711 YP_001155517.1 CDS Pnuc_0735 NC_009379.1 737188 738792 D KEGG: bxe:Bxe_A1542 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 737188..738792 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053320 YP_001155518.1 CDS Pnuc_0736 NC_009379.1 738802 740586 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rso:RSc1603 probable dihydrolipoamide dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) protein; dihydrolipoamide dehydrogenase 738802..740586 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052861 YP_001155519.1 CDS Pnuc_0737 NC_009379.1 740653 741207 R TIGRFAM: phasin family protein; KEGG: reh:H16_A1381 phasin (PHA-granule associated protein); phasin family protein complement(740653..741207) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052715 YP_001155520.1 CDS Pnuc_0738 NC_009379.1 741408 742295 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rso:RSc1607 probable transmembrane protein; hypothetical protein 741408..742295 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052278 YP_001155521.1 CDS Pnuc_0739 NC_009379.1 742403 743431 D PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: rme:Rmet_1204 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 742403..743431 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051974 YP_001155522.1 CDS Pnuc_0740 NC_009379.1 743442 744275 R PFAM: regulatory proteins, IclR; KEGG: rme:Rmet_1205 transcriptional regulator, IclR family; regulatory protein IclR complement(743442..744275) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053969 YP_001155523.1 CDS Pnuc_0741 NC_009379.1 744368 745402 R PFAM: dihydroorotate dehydrogenase; KEGG: rme:Rmet_1213 dihydroorotate dehydrogenase; dihydroorotate oxidase complement(744368..745402) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053643 YP_001155524.1 CDS Pnuc_0742 NC_009379.1 745412 746158 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(745412..746158) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053069 YP_001155525.1 CDS aat NC_009379.1 746155 746892 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(746155..746892) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053071 YP_001155526.1 CDS Pnuc_0744 NC_009379.1 746901 747461 R PFAM: NUDIX hydrolase; KEGG: bte:BTH_I2508 pyrophosphatase, MutT/NUDIX family; NUDIX hydrolase complement(746901..747461) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053521 YP_001155527.1 CDS Pnuc_0745 NC_009379.1 747471 749294 R PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: bxe:Bxe_A3959 para-aminobenzoate synthase, component I; anthranilate synthase component I/chorismate-binding protein complement(747471..749294) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053228 YP_001155528.1 CDS Pnuc_0746 NC_009379.1 749317 749892 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rso:RSc1165 probable peptidyl-prolyl cis-trans isomerase A (PPIase A)(rotamase A)(CypH) signal peptide protein; peptidyl-prolyl cis-trans isomerase, cyclophilin type complement(749317..749892) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052490 YP_001155529.1 CDS Pnuc_0747 NC_009379.1 749980 750606 R PFAM: DSBA oxidoreductase; KEGG: bch:Bcen2424_5467 DsbA oxidoreductase; DSBA oxidoreductase complement(749980..750606) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052324 YP_001155530.1 CDS Pnuc_0748 NC_009379.1 750618 751931 R PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: bch:Bcen2424_0977 AAA ATPase, central domain protein; recombination factor protein RarA complement(750618..751931) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053766 YP_001155531.1 CDS Pnuc_0749 NC_009379.1 751936 752343 R KEGG: psb:Psyr_2639 hypothetical protein; hypothetical protein complement(751936..752343) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053577 YP_001155532.1 CDS Pnuc_0750 NC_009379.1 752455 753309 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: aav:Aave_4261 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase complement(752455..753309) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052808 YP_001155533.1 CDS Pnuc_0751 NC_009379.1 753311 754039 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: reh:H16_A1090 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(753311..754039) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052303 YP_001155534.1 CDS Pnuc_0752 NC_009379.1 754053 755252 R PFAM: aminotransferase, class I and II; KEGG: bch:Bcen2424_2225 aminotransferase, class I and II; aminotransferase, class I and II complement(754053..755252) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052218 YP_001155535.1 CDS Pnuc_0753 NC_009379.1 755347 756123 D PFAM: protein of unknown function DUF328; KEGG: reh:H16_A1106 hypothetical protein; hypothetical protein 755347..756123 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052227 YP_001155536.1 CDS Pnuc_0754 NC_009379.1 756123 757334 D KEGG: rme:Rmet_2494 hypothetical protein; hypothetical protein 756123..757334 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052720 YP_001155537.1 CDS Pnuc_0755 NC_009379.1 757400 757774 R KEGG: rme:Rmet_2491 signal peptide protein; hypothetical protein complement(757400..757774) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052739 YP_001155538.1 CDS Pnuc_0756 NC_009379.1 757796 758785 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(757796..758785) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053149 YP_001155539.1 CDS Pnuc_0757 NC_009379.1 758938 759675 D PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: reh:H16_A2633 transcriptional regulator, GntR-family; GntR family transcriptional regulator 758938..759675 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053437 YP_001155540.1 CDS Pnuc_0758 NC_009379.1 759808 760227 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rso:RSc1996 transmembrane succinate dehydrogenase (cytochrome b-556 subunit) oxidoreductase; succinate dehydrogenase, cytochrome b subunit 759808..760227 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053556 YP_001155541.1 CDS Pnuc_0759 NC_009379.1 760252 760617 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rme:Rmet_2485 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 760252..760617 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053579 YP_001155542.1 CDS Pnuc_0760 NC_009379.1 760622 762400 D KEGG: rso:RSc1994 succinate dehydrogenase (flavoprotein subunit) oxidoreductase; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase, flavoprotein subunit 760622..762400 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053703 YP_001155543.1 CDS Pnuc_0761 NC_009379.1 762418 763122 D TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: rso:RSc1993 succinate dehydrogenase (iron-sulfur subunit) oxidoreductase; succinate dehydrogenase and fumarate reductase iron-sulfur protein 762418..763122 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053799 YP_001155544.1 CDS Pnuc_0762 NC_009379.1 763119 763388 D PFAM: protein of unknown function DUF339; KEGG: rso:RSc1992 hypothetical protein; hypothetical protein 763119..763388 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053938 YP_001155545.1 CDS gltA NC_009379.1 763471 764784 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 763471..764784 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053925 YP_001155546.1 CDS Pnuc_0764 NC_009379.1 764802 766211 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 764802..766211 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053959 YP_001155547.1 CDS Pnuc_0765 NC_009379.1 766222 766428 D hypothetical protein 766222..766428 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053044 YP_001155548.1 CDS leuD NC_009379.1 766464 767111 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 766464..767111 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053795 YP_001155549.1 CDS Pnuc_0767 NC_009379.1 767135 768205 D KEGG: rme:Rmet_2472 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 767135..768205 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052635 YP_001155550.1 CDS Pnuc_0768 NC_009379.1 768254 769411 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 768254..769411 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052163 YP_001155551.1 CDS Pnuc_0769 NC_009379.1 769429 770805 D KEGG: dar:Daro_0866 hypothetical protein; Tfp pilus assembly protein FimV-like protein 769429..770805 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052166 YP_001155552.1 CDS truA NC_009379.1 770815 771642 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 770815..771642 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052169 YP_001155553.1 CDS Pnuc_0771 NC_009379.1 771669 772343 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: rso:RSc1984 N-(5'-phosphoribosyl)anthranilate isomerase; phosphoribosylanthranilate isomerase 771669..772343 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052170 YP_001155554.1 CDS Pnuc_0772 NC_009379.1 772377 773570 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 772377..773570 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052356 YP_001155555.1 CDS trpA NC_009379.1 773621 774418 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 773621..774418 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052358 YP_001155556.1 CDS Pnuc_0774 NC_009379.1 774425 775312 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: rme:Rmet_2464 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta 774425..775312 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052362 YP_001155557.1 CDS Pnuc_0775 NC_009379.1 775317 776642 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: reu:Reut_A2302 folylpolyglutamate synthetase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 775317..776642 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052363 YP_001155558.1 CDS Pnuc_0776 NC_009379.1 776646 777485 D PFAM: Sporulation domain protein; KEGG: reh:H16_A2609 hypothetical membrane associated protein; sporulation domain-containing protein 776646..777485 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052365 YP_001155559.1 CDS Pnuc_0777 NC_009379.1 777485 778051 D PFAM: Colicin V production protein; KEGG: rso:RSc1977 probable colicin V production transmembrane protein; colicin V production protein 777485..778051 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052366 YP_001155560.1 CDS Pnuc_0778 NC_009379.1 778056 779594 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 778056..779594 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052697 YP_001155561.1 CDS Pnuc_0779 NC_009379.1 779655 780863 D catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 779655..780863 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052699 YP_001155562.1 CDS Pnuc_0780 NC_009379.1 780844 781509 D PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: eba:ebA59 predicted SAM-dependent methyltransferase; methyltransferase type 11 780844..781509 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052700 YP_001155563.1 CDS Pnuc_0781 NC_009379.1 781502 782608 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1923 ABC transporter related; ABC transporter complement(781502..782608) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052826 YP_001155564.1 CDS Pnuc_0782 NC_009379.1 782608 783261 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_1924 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit complement(782608..783261) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052904 YP_001155565.1 CDS Pnuc_0783 NC_009379.1 783345 783698 D hypothetical protein 783345..783698 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052976 YP_001155566.1 CDS Pnuc_0784 NC_009379.1 783784 784275 D PFAM: OmpA/MotB domain protein; KEGG: reu:Reut_A0796 OmpA/MotB; OmpA/MotB domain-containing protein 783784..784275 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052979 YP_001155567.1 CDS Pnuc_0785 NC_009379.1 784332 784838 D hypothetical protein 784332..784838 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053100 YP_001155568.1 CDS Pnuc_0786 NC_009379.1 785215 786147 R PFAM: cytochrome c, class I; KEGG: pfl:PFL_3402 cytochrome c family protein; cytochrome c, class I complement(785215..786147) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053245 YP_001155569.1 CDS Pnuc_0787 NC_009379.1 786193 786906 R KEGG: pfl:PFL_3403 cytochrome c family protein; cytochrome c family protein complement(786193..786906) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052652 YP_001155570.1 CDS Pnuc_0788 NC_009379.1 786985 787512 D PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: sfu:Sfum_0512 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 786985..787512 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053389 YP_001155571.1 CDS Pnuc_0789 NC_009379.1 787514 788083 D KEGG: sfu:Sfum_0511 rhodanese domain protein; rhodanese domain-containing protein 787514..788083 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053394 YP_001155572.1 CDS Pnuc_0790 NC_009379.1 788070 788282 R hypothetical protein complement(788070..788282) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053525 YP_001155573.1 CDS Pnuc_0791 NC_009379.1 788346 788978 D KEGG: sme:SMb21551 hypothetical protein; hypothetical protein 788346..788978 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053649 YP_001155574.1 CDS Pnuc_0792 NC_009379.1 788993 789970 D PFAM: Rhodanese domain protein; KEGG: aeh:Mlg_1647 rhodanese domain protein; rhodanese domain-containing protein 788993..789970 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053652 YP_001155575.1 CDS Pnuc_0793 NC_009379.1 789983 790300 D PFAM: regulatory protein, ArsR; helix-turn-helix, HxlR type; KEGG: bur:Bcep18194_B1884 transcriptional regulator, ArsR family; regulatory protein ArsR 789983..790300 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053654 YP_001155576.1 CDS Pnuc_0794 NC_009379.1 790315 790527 D KEGG: rfr:Rfer_0021 hypothetical protein; hypothetical protein 790315..790527 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053792 YP_001155577.1 CDS Pnuc_0795 NC_009379.1 790569 791465 R PFAM: UbiA prenyltransferase; KEGG: eba:ebA3963 predicted 1,4-dihydroxy-2-naphthoate octaprenyltransferase; UbiA prenyltransferase complement(790569..791465) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053797 YP_001155578.1 CDS Pnuc_0796 NC_009379.1 791629 792345 D PFAM: cyclic nucleotide-binding; KEGG: rru:Rru_A1622 transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein 791629..792345 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052689 YP_001155579.1 CDS Pnuc_0797 NC_009379.1 792398 792706 R PFAM: High potential iron-sulfur protein; KEGG: rfr:Rfer_3162 twin-arginine translocation pathway signal; high potential iron-sulfur protein complement(792398..792706) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053928 YP_001155580.1 CDS Pnuc_0798 NC_009379.1 792719 793528 R PFAM: protein of unknown function DUF81; KEGG: rso:RSc1541 probable transmembrane protein; hypothetical protein complement(792719..793528) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052963 YP_001155581.1 CDS Pnuc_0799 NC_009379.1 793531 794772 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: neu:NE2567 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(793531..794772) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053388 YP_001155582.1 CDS Pnuc_0800 NC_009379.1 794859 795779 D PFAM: beta-lactamase domain protein; KEGG: reh:H16_A1980 hydroxyacylglutathione hydrolase; beta-lactamase domain-containing protein 794859..795779 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053017 YP_001155583.1 CDS Pnuc_0801 NC_009379.1 795830 797185 D PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: reu:Reut_A3258 oxidoreductase, molybdopterin binding:Mo-co oxidoreductase dimerisation domain; oxidoreductase, molybdopterin binding 795830..797185 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052203 YP_001155584.1 CDS Pnuc_0802 NC_009379.1 797169 798251 D PFAM: cytochrome c, class I; KEGG: ade:Adeh_2285 cytochrome c, class I; cytochrome c, class I 797169..798251 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052467 YP_001155585.1 CDS Pnuc_0803 NC_009379.1 798335 798787 D KEGG: reu:Reut_A3255 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 798335..798787 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052613 YP_001155586.1 CDS Pnuc_0804 NC_009379.1 798842 799150 D KEGG: reh:H16_A3568 sulfur oxidation protein (SoxZ); sulfur oxidation protein (SoxZ) 798842..799150 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053420 YP_001155587.1 CDS Pnuc_0805 NC_009379.1 799196 800008 D KEGG: mpt:Mpe_A2434 hypothetical protein; hypothetical protein 799196..800008 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053566 YP_001155588.1 CDS Pnuc_0806 NC_009379.1 800028 800666 D KEGG: mpt:Mpe_A2433 hypothetical protein; hypothetical protein 800028..800666 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053878 YP_001155589.1 CDS Pnuc_0807 NC_009379.1 800714 802444 D PFAM: 5'-Nucleotidase domain protein; KEGG: reu:Reut_A3249 twin-arginine translocation pathway signal; 5'-nucleotidase domain-containing protein 800714..802444 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052231 YP_001155590.1 CDS Pnuc_0808 NC_009379.1 802469 802906 D KEGG: mpt:Mpe_A2431 conserved hypothetical signal peptide protein; hypothetical protein 802469..802906 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052198 YP_001155591.1 CDS Pnuc_0809 NC_009379.1 802919 803875 D PFAM: beta-lactamase domain protein; KEGG: mpt:Mpe_A2427 beta lactamase precursor; beta-lactamase domain-containing protein 802919..803875 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052289 YP_001155592.1 CDS Pnuc_0810 NC_009379.1 803935 804252 D KEGG: tbd:Tbd_1840 hypothetical protein; hypothetical protein 803935..804252 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052625 YP_001155593.1 CDS Pnuc_0811 NC_009379.1 804272 805393 D PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: reh:H16_A2825 predicted transporter component; hypothetical protein 804272..805393 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052702 YP_001155594.1 CDS Pnuc_0812 NC_009379.1 805419 805856 D PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: pol:Bpro_4846 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 805419..805856 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053049 YP_001155595.1 CDS Pnuc_0813 NC_009379.1 805858 806304 D PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: mpt:Mpe_A2717 transmembrane protein; hypothetical protein 805858..806304 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053727 YP_001155596.1 CDS Pnuc_0814 NC_009379.1 806316 806699 D PFAM: protein of unknown function DUF442; KEGG: mpt:Mpe_A1235 hypothetical protein; hypothetical protein 806316..806699 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053725 YP_001155597.1 CDS Pnuc_0815 NC_009379.1 806720 807139 D PFAM: thioesterase superfamily protein; KEGG: vei:Veis_3983 thioesterase superfamily protein; thioesterase superfamily protein 806720..807139 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053565 YP_001155598.1 CDS Pnuc_0816 NC_009379.1 807149 808246 D SMART: Rhodanese domain protein; KEGG: dar:Daro_2715 rhodanese-like; rhodanese domain-containing protein 807149..808246 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053270 YP_001155599.1 CDS Pnuc_0817 NC_009379.1 808377 810386 D PFAM: cytochrome c, class I; KEGG: dar:Daro_2492 cytochrome c, class I; cytochrome c, class I 808377..810386 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053114 YP_001155600.1 CDS Pnuc_0818 NC_009379.1 810473 811651 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pfl:PFL_0117 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(810473..811651) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052576 YP_001155601.1 CDS Pnuc_0819 NC_009379.1 811746 812456 D TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: reu:Reut_A0480 protein of unknown function DUF165; hypothetical protein 811746..812456 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052244 YP_001155602.1 CDS Pnuc_0820 NC_009379.1 812591 814174 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A1844 ABC transporter related; ABC transporter 812591..814174 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052923 YP_001155603.1 CDS Pnuc_0821 NC_009379.1 814214 814477 R PFAM: protein of unknown function DUF1289; KEGG: rme:Rmet_1581 protein of unknown function DUF1289; hypothetical protein complement(814214..814477) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053148 YP_001155604.1 CDS Pnuc_0822 NC_009379.1 814474 815646 R PFAM: protein of unknown function DUF482; KEGG: bml:BMA10299_A3011 hypothetical protein; hypothetical protein complement(814474..815646) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052431 YP_001155605.1 CDS Pnuc_0823 NC_009379.1 815649 816035 R KEGG: aav:Aave_2791 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(815649..816035) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053821 YP_001155606.1 CDS Pnuc_0824 NC_009379.1 816039 817709 R PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: bch:Bcen2424_1461 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase complement(816039..817709) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052544 YP_001155607.1 CDS Pnuc_0825 NC_009379.1 817866 818567 D KEGG: reu:Reut_A1269 coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 817866..818567 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052623 YP_001155608.1 CDS Pnuc_0826 NC_009379.1 818606 819256 D KEGG: rme:Rmet_1154 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 818606..819256 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053581 YP_001155609.1 CDS Pnuc_0827 NC_009379.1 819291 821171 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: alpha/beta hydrolase fold; cation efflux protein; KEGG: reu:Reut_A1272 alpha/beta hydrolase fold; cation diffusion facilitator family transporter 819291..821171 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053469 YP_001155610.1 CDS Pnuc_0828 NC_009379.1 821181 823211 D PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; KEGG: rme:Rmet_1159 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; (p)ppGpp synthetase I SpoT/RelA 821181..823211 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052535 YP_001155611.1 CDS thrS NC_009379.1 823405 825327 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 823405..825327 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053213 YP_001155612.1 CDS Pnuc_0830 NC_009379.1 825385 825894 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: bps:BPSL1944 translation initiation factor IF-3; translation initiation factor IF-3 825385..825894 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053322 YP_001155613.1 CDS rpmI NC_009379.1 826035 826232 D PFAM: ribosomal protein L35; KEGG: bxe:Bxe_A1373 ribosomal protein L35; 50S ribosomal protein L35 826035..826232 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053876 YP_001155614.1 CDS rplT NC_009379.1 826258 826623 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 826258..826623 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053001 YP_001155615.1 CDS Pnuc_0833 NC_009379.1 826650 827696 D KEGG: reh:H16_A1343 phenylalanyl-tRNA synthetase alpha chain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc; aminoacyl tRNA synthetase, class II domain protein; phenylalanyl-tRNA synthetase subunit alpha 826650..827696 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052234 YP_001155616.1 CDS pheT NC_009379.1 827720 830176 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 827720..830176 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052265 YP_001155617.1 CDS Pnuc_0835 NC_009379.1 830222 830545 D TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: reu:Reut_A1281 integration host factor, alpha subunit; integration host factor subunit alpha 830222..830545 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052173 YP_001155618.1 CDS Pnuc_0836 NC_009379.1 830523 830873 D PFAM: regulatory protein, MerR; KEGG: bbr:BB2043 MerR-family transcriptional regulator; MerR family transcriptional regulator 830523..830873 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053138 YP_001155619.1 CDS Pnuc_0837 NC_009379.1 831024 831464 D PFAM: thioesterase superfamily protein; KEGG: rme:Rmet_1850 phenylacetic acid degradation-related protein; thioesterase superfamily protein 831024..831464 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053357 YP_001155620.1 CDS Pnuc_0838 NC_009379.1 831667 831951 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_1150 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 831667..831951 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053269 YP_001155621.1 CDS Pnuc_0839 NC_009379.1 832022 832717 R TIGRFAM: DNA binding domain, excisionase family; KEGG: dar:Daro_0562 excisionase/Xis, DNA-binding; DNA binding domain-containing protein complement(832022..832717) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052959 YP_001155622.1 CDS sucA NC_009379.1 833018 835873 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 833018..835873 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052710 YP_001155623.1 CDS Pnuc_0841 NC_009379.1 835924 837099 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: reu:Reut_A2046 dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 835924..837099 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052078 YP_001155624.1 CDS Pnuc_0842 NC_009379.1 837112 838548 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 837112..838548 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052456 YP_001155625.1 CDS Pnuc_0843 NC_009379.1 838549 839652 D PFAM: AFG1-family ATPase; KEGG: rme:Rmet_2047 AFG1-like ATPase; AFG1 family ATPase 838549..839652 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053261 YP_001155626.1 CDS Pnuc_0844 NC_009379.1 839662 840510 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: aav:Aave_3707 PHP C-terminal domain protein; phosphotransferase domain-containing protein 839662..840510 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052982 YP_001155627.1 CDS Pnuc_0845 NC_009379.1 840541 841743 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 840541..841743 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053914 YP_001155628.1 CDS Pnuc_0846 NC_009379.1 841795 842316 D KEGG: dar:Daro_2716 hypothetical protein; hypothetical protein 841795..842316 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052941 YP_001155629.1 CDS Pnuc_0847 NC_009379.1 842343 843266 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 842343..843266 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052586 YP_001155630.1 CDS Pnuc_0848 NC_009379.1 843263 844408 D PFAM: NlpBDapX family lipoprotein; KEGG: rso:RSc1146 probable transmembrane protein; NlpB/DapX family lipoprotein 843263..844408 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052910 YP_001155631.1 CDS Pnuc_0849 NC_009379.1 844482 844649 R hypothetical protein complement(844482..844649) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053307 YP_001155632.1 CDS Pnuc_0850 NC_009379.1 844761 845993 R PFAM: Cupin 4 family protein; KEGG: bxe:Bxe_A1614 hypothetical protein; cupin 4 family protein complement(844761..845993) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052305 YP_001155633.1 CDS Pnuc_0851 NC_009379.1 846027 846650 D KEGG: bpm:BURPS1710b_2693 FkbP-type peptidyl-prolyl cis-trans isomerase; FkbP-type peptidyl-prolyl cis-trans isomerase 846027..846650 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052446 YP_001155634.1 CDS Pnuc_0852 NC_009379.1 846654 847412 R TIGRFAM: serine O-acetyltransferase; KEGG: reu:Reut_A1117 serine O-acetyltransferase; serine O-acetyltransferase complement(846654..847412) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052774 YP_001155635.1 CDS Pnuc_0853 NC_009379.1 847436 848188 R TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: bpe:BP1901 probable methyltransferase; RNA methyltransferase complement(847436..848188) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052412 YP_001155636.1 CDS Pnuc_0854 NC_009379.1 848316 849104 D PFAM: inositol monophosphatase; KEGG: reu:Reut_A1115 inositol-1(or 4)-monophosphatase; inositol monophosphatase 848316..849104 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052506 YP_001155637.1 CDS Pnuc_0855 NC_009379.1 849149 849937 R TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: reu:Reut_A1118 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase complement(849149..849937) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052235 YP_001155638.1 CDS Pnuc_0856 NC_009379.1 849934 850437 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rso:RSc1164 probable peptidyl-prolyl cis-trans isomerase B (ppiase B) (rotamase B)(cypB protein); peptidyl-prolyl isomerase complement(849934..850437) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052882 YP_001155639.1 CDS Pnuc_0857 NC_009379.1 850442 851257 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_2866 tetratricopeptide TPR_2; TPR repeat-containing protein complement(850442..851257) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053144 YP_001155640.1 CDS cysS NC_009379.1 851345 852766 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 851345..852766 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053608 YP_001155641.1 CDS Pnuc_0859 NC_009379.1 852766 853422 D PFAM: HhH-GPD family protein; KEGG: reu:Reut_A1123 HhH-GPD; HhH-GPD family protein 852766..853422 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053765 YP_001155642.1 CDS Pnuc_0860 NC_009379.1 853432 854403 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 853432..854403 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053997 YP_001155643.1 CDS Pnuc_0861 NC_009379.1 854369 855697 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; tRNA(Ile)-lysidine synthetase domain protein; KEGG: reu:Reut_A1125 PP-loop; tRNA(Ile)-lysidine synthetase 854369..855697 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052193 YP_001155644.1 CDS Pnuc_0862 NC_009379.1 855748 856998 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 855748..856998 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053239 YP_001155645.1 CDS Pnuc_0863 NC_009379.1 857403 858170 D PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0506 metallophosphoesterase; metallophosphoesterase 857403..858170 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052897 YP_001155646.1 CDS Pnuc_0864 NC_009379.1 858200 859507 R PFAM: HipA domain protein; KEGG: pna:Pnap_4338 HipA domain protein; HipA domain-containing protein complement(858200..859507) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053930 YP_001155647.1 CDS Pnuc_0865 NC_009379.1 859507 859848 R KEGG: rfr:Rfer_3066 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(859507..859848) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054017 YP_001155648.1 CDS Pnuc_0868 NC_009379.1 861113 862693 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_3923 outer membrane efflux protein; RND efflux system outer membrane lipoprotein 861113..862693 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053210 YP_001155649.1 CDS Pnuc_0869 NC_009379.1 862918 863976 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: lpp:lpp2581 hypothetical protein; RND family efflux transporter MFP subunit 862918..863976 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053299 YP_001155650.1 CDS Pnuc_0870 NC_009379.1 863979 867107 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bja:blr6726 AcrB/AcrD/AcrF family protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 863979..867107 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053785 YP_001155651.1 CDS Pnuc_0871 NC_009379.1 867196 867654 D hypothetical protein 867196..867654 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053379 YP_001155652.1 CDS Pnuc_0872 NC_009379.1 867749 868942 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rfr:Rfer_2745 L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 867749..868942 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053092 YP_001155653.1 CDS Pnuc_0873 NC_009379.1 868956 869885 D PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4037 pyruvate carboxyltransferase; pyruvate carboxyltransferase 868956..869885 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052346 YP_001155654.1 CDS Pnuc_0874 NC_009379.1 870147 870722 D KEGG: dar:Daro_3019 phasin; hypothetical protein 870147..870722 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053917 YP_001155655.1 CDS Pnuc_0875 NC_009379.1 870827 871366 R hypothetical protein complement(870827..871366) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052206 YP_001155656.1 CDS Pnuc_0876 NC_009379.1 871744 872040 D hypothetical protein 871744..872040 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052626 YP_001155657.1 CDS Pnuc_0877 NC_009379.1 872070 872531 D PFAM: Smr protein/MutS2; KEGG: dps:DP1166 hypothetical protein; Smr protein/MutS2 872070..872531 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052936 YP_001155658.1 CDS Pnuc_0878 NC_009379.1 872562 872918 D PFAM: protein of unknown function DUF883, ElaB; KEGG: azo:azo3667 conserved hypothetical membrane protein; hypothetical protein 872562..872918 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053665 YP_001155659.1 CDS Pnuc_0879 NC_009379.1 872925 873293 D KEGG: rme:Rmet_2656 transmembrane protein; transmembrane protein 872925..873293 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052953 YP_001155660.1 CDS Pnuc_0880 NC_009379.1 873290 873571 D hypothetical protein 873290..873571 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053786 YP_001155661.1 CDS Pnuc_0881 NC_009379.1 873589 874107 R PFAM: phosphoribosyltransferase; KEGG: syw:SYNW0814 adenine phosphoribosyltransferase; adenine phosphoribosyltransferase complement(873589..874107) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053642 YP_001155662.1 CDS Pnuc_0882 NC_009379.1 874119 874676 D KEGG: nwi:Nwi_3067 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase; 5'-methylthioadenosine nucleosidase 874119..874676 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053508 YP_001155663.1 CDS Pnuc_0883 NC_009379.1 874686 876362 D PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll1319 acyl-CoA synthase; AMP-dependent synthetase/ligase 874686..876362 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053095 YP_001155664.1 CDS Pnuc_0884 NC_009379.1 876398 878146 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(876398..878146) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052695 YP_001155665.1 CDS Pnuc_0885 NC_009379.1 878232 879122 R KEGG: rme:Rmet_1758 hypothetical protein; hypothetical protein complement(878232..879122) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052344 YP_001155666.1 CDS Pnuc_0886 NC_009379.1 879106 879633 R KEGG: sme:SMa0945 hypothetical protein; hypothetical protein complement(879106..879633) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054018 YP_001155667.1 CDS Pnuc_0887 NC_009379.1 879642 880946 R PFAM: peptidase U32; KEGG: rfr:Rfer_1385 peptidase U32; peptidase U32 complement(879642..880946) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053905 YP_001155668.1 CDS Pnuc_0888 NC_009379.1 881224 881808 D hypothetical protein 881224..881808 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052651 YP_001155669.1 CDS Pnuc_0889 NC_009379.1 881968 882849 D KEGG: rso:RSc0100 probable bifunctional protein: hydroxy-phosphomethylpyrimidine kinase and hydroxy-methylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 881968..882849 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053842 YP_001155670.1 CDS Pnuc_0890 NC_009379.1 882980 883321 D hypothetical protein 882980..883321 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053407 YP_001155671.1 CDS Pnuc_0891 NC_009379.1 883318 883653 D hypothetical protein 883318..883653 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052317 YP_001155672.1 CDS Pnuc_0892 NC_009379.1 883650 884576 R KEGG: rfr:Rfer_2467 thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(883650..884576) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052420 YP_001155673.1 CDS thiG NC_009379.1 884588 885406 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(884588..885406) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052749 YP_001155674.1 CDS Pnuc_0894 NC_009379.1 885431 885628 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: rfr:Rfer_2465 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS complement(885431..885628) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053332 YP_001155675.1 CDS Pnuc_0895 NC_009379.1 885619 886716 R PFAM: FAD dependent oxidoreductase; KEGG: vei:Veis_4314 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(885619..886716) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052732 YP_001155676.1 CDS Pnuc_0896 NC_009379.1 886777 888720 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(886777..888720) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053303 YP_001155677.1 CDS Pnuc_0897 NC_009379.1 888942 889775 R PFAM: NUDIX hydrolase; KEGG: ngo:NGO2040 hypothetical protein; NUDIX hydrolase complement(888942..889775) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053683 YP_001155678.1 CDS Pnuc_0898 NC_009379.1 890284 891516 R PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_2522 major facilitator superfamily MFS_1; major facilitator transporter complement(890284..891516) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052674 YP_001155679.1 CDS Pnuc_0899 NC_009379.1 891516 892799 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_0830 L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase complement(891516..892799) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052109 YP_001155680.1 CDS Pnuc_0900 NC_009379.1 892817 894805 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 892817..894805 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053139 YP_001155681.1 CDS Pnuc_0901 NC_009379.1 894877 897258 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 894877..897258 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053027 YP_001155682.1 CDS Pnuc_0902 NC_009379.1 897280 898239 R PFAM: protein of unknown function DUF182; KEGG: mpt:Mpe_A3412 hypothetical protein; hypothetical protein complement(897280..898239) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052329 YP_001155683.1 CDS Pnuc_0903 NC_009379.1 898289 898939 D KEGG: rpa:RPA3797 hypothetical protein; hypothetical protein 898289..898939 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053511 YP_001155684.1 CDS Pnuc_0904 NC_009379.1 898936 899391 R PFAM: Endoribonuclease L-PSP; KEGG: rme:Rmet_2512 endoribonuclease L-PSP; endoribonuclease L-PSP complement(898936..899391) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053632 YP_001155685.1 CDS Pnuc_0905 NC_009379.1 899427 900602 R KEGG: reu:Reut_A1021 hypothetical protein; hypothetical protein complement(899427..900602) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053633 YP_001155686.1 CDS Pnuc_0906 NC_009379.1 900633 901502 R PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: reu:Reut_A1023 AAA ATPase, central region:ATPase associated with various cellular activities, AAA_5; ATPase complement(900633..901502) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053635 YP_001155687.1 CDS Pnuc_0907 NC_009379.1 901677 902042 D KEGG: rso:RSc0999 periplasmic cytochrome type-c oxidoreductase signal peptide protein; periplasmic cytochrome type-c oxidoreductase signal peptide protein 901677..902042 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052815 YP_001155688.1 CDS Pnuc_0908 NC_009379.1 902056 902421 D PFAM: cytochrome c, class I; KEGG: rso:RSc1000 periplasmic cytochrome type-c oxidoreductase signal peptide protein; cytochrome c, class I 902056..902421 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053941 YP_001155689.1 CDS Pnuc_0909 NC_009379.1 902488 903126 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: azo:azo0684 transcriptional regulator, GntR-family; GntR family transcriptional regulator complement(902488..903126) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051923 YP_001155690.1 CDS Pnuc_0910 NC_009379.1 903188 905407 D MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 903188..905407 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051958 YP_001155691.1 CDS Pnuc_0911 NC_009379.1 905423 906448 D functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 905423..906448 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053978 YP_001155692.1 CDS Pnuc_0912 NC_009379.1 906459 907991 D PFAM: carboxyl transferase; KEGG: mpt:Mpe_A1016 propionyl-CoA carboxylase beta subunit; carboxyl transferase 906459..907991 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053916 YP_001155693.1 CDS Pnuc_0913 NC_009379.1 908007 910043 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: mpt:Mpe_A1017 propionyl-CoA carboxylase, alpha subunit; acetyl-CoA carboxylase, biotin carboxylase 908007..910043 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052523 YP_001155694.1 CDS Pnuc_0914 NC_009379.1 910059 910526 D KEGG: dar:Daro_0300 lactoylglutathione lyase; lactoylglutathione lyase 910059..910526 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052311 YP_001155695.1 CDS Pnuc_0915 NC_009379.1 910617 911294 D PFAM: peptidase M22, glycoprotease; KEGG: bxe:Bxe_A1654 peptidase M22, glycoprotease; peptidase M22, glycoprotease 910617..911294 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052564 YP_001155696.1 CDS Pnuc_0916 NC_009379.1 911294 911842 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: reh:H16_A2117 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 911294..911842 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052276 YP_001155697.1 CDS Pnuc_0917 NC_009379.1 911839 912378 D hypothetical protein 911839..912378 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052028 YP_001155698.1 CDS Pnuc_0918 NC_009379.1 912420 913739 R PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1659 major facilitator superfamily (MFS) transporter; lysophospholipid transporter LplT complement(912420..913739) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053131 YP_001155699.1 CDS Pnuc_0919 NC_009379.1 913789 914913 D KEGG: bpm:BURPS1710b_2603 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 913789..914913 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052824 YP_001155700.1 CDS Pnuc_0920 NC_009379.1 914985 915872 R KEGG: rso:RSc1627 probable transmembrane protein; transmembrane protein complement(914985..915872) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053758 YP_001155701.1 CDS Pnuc_0921 NC_009379.1 915977 916933 D TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bxe:Bxe_A2346 pseudouridine synthase, RluD; RluA family pseudouridine synthase 915977..916933 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053232 YP_001155702.1 CDS Pnuc_0922 NC_009379.1 916930 917715 D PFAM: protein of unknown function DUF152; KEGG: yps:YPTB0847 conserved hypothetical protein; hypothetical protein 916930..917715 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053068 YP_001155703.1 CDS Pnuc_0923 NC_009379.1 917835 919466 D TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rso:RSc1631 probable poly-beta-hydroxybutyrate polymerase transmembrane protein; poly(R)-hydroxyalkanoic acid synthase 917835..919466 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053186 YP_001155704.1 CDS fabG NC_009379.1 919508 920248 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 919508..920248 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052960 YP_001155705.1 CDS Pnuc_0925 NC_009379.1 920359 920919 D TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: reh:H16_A1440 transcriptional regulator of phasin expression; polyhydroxyalkonate synthesis repressor PhaR 920359..920919 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053164 YP_001155706.1 CDS rimO NC_009379.1 920922 922280 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 920922..922280 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052301 YP_001155707.1 CDS Pnuc_0927 NC_009379.1 922362 923546 D catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 922362..923546 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052838 YP_001155708.1 CDS Pnuc_0928 NC_009379.1 923587 924477 R KEGG: bxe:Bxe_A2331 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; phosphoserine phosphatase SerB complement(923587..924477) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052841 YP_001155709.1 CDS Pnuc_0929 NC_009379.1 924498 928040 R KEGG: reu:Reut_A1360 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor complement(924498..928040) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052502 YP_001155710.1 CDS Pnuc_0930 NC_009379.1 928064 928816 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: rso:RSc1643 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 928064..928816 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052503 YP_001155711.1 CDS Pnuc_0931 NC_009379.1 928827 929330 D KEGG: rso:RSc1644 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 928827..929330 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052499 YP_001155712.1 CDS Pnuc_0932 NC_009379.1 929377 929967 D PFAM: nitroreductase; KEGG: reh:H16_A1142 nitroreductase; hypothetical protein 929377..929967 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052293 YP_001155713.1 CDS tig NC_009379.1 930179 931516 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 930179..931516 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052331 YP_001155714.1 CDS Pnuc_0934 NC_009379.1 931548 932177 D KEGG: rso:RSc1711 probable ATP-dependent protease (proteolytic subunit) transmembrane protein; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 931548..932177 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053438 YP_001155715.1 CDS clpX NC_009379.1 932216 933577 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 932216..933577 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051987 YP_001155716.1 CDS Pnuc_0936 NC_009379.1 933757 936189 D KEGG: reu:Reut_A1382 peptidase S16, ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 933757..936189 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053764 YP_001155717.1 CDS Pnuc_0937 NC_009379.1 936481 937944 D KEGG: rfr:Rfer_2249 PpiC-type peptidyl-prolyl cis-trans isomerase; hypothetical protein 936481..937944 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052911 YP_001155718.1 CDS Pnuc_0938 NC_009379.1 937962 938621 R PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bpe:BP1733 acyl-CoA thioesterase I precursor; arylesterase complement(937962..938621) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052546 YP_001155719.1 CDS Pnuc_0939 NC_009379.1 938624 939298 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A1385 ABC transporter related; ABC transporter 938624..939298 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052648 YP_001155720.1 CDS Pnuc_0940 NC_009379.1 939320 943357 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 939320..943357 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052143 YP_001155721.1 CDS Pnuc_0941 NC_009379.1 943370 944125 D KEGG: reu:Reut_A2336 hypothetical protein; hypothetical protein 943370..944125 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052501 YP_001155722.1 CDS Pnuc_0942 NC_009379.1 944219 946804 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(944219..946804) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051893 YP_001155723.1 CDS Pnuc_0943 NC_009379.1 946964 947152 R KEGG: deh:cbdb_A54 hypothetical protein; hypothetical protein complement(946964..947152) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052787 YP_001155724.1 CDS Pnuc_0944 NC_009379.1 947160 947606 R KEGG: reu:Reut_A2874 conserved hypothetical signal peptide protein; hypothetical protein complement(947160..947606) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053329 YP_001155725.1 CDS pyrG NC_009379.1 947693 949354 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 947693..949354 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053376 YP_001155726.1 CDS Pnuc_0946 NC_009379.1 949365 950228 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 949365..950228 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053091 YP_001155727.1 CDS eno NC_009379.1 950279 951565 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 950279..951565 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052686 YP_001155728.1 CDS Pnuc_0948 NC_009379.1 951585 951902 D PFAM: Septum formation initiator; KEGG: reu:Reut_A1092 septum formation initiator; septum formation initiator 951585..951902 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053955 YP_001155729.1 CDS Pnuc_0949 NC_009379.1 951913 952878 R PFAM: Hsp33 protein; KEGG: bps:BPSL2267 HSP33 chaperonin; Hsp33 protein complement(951913..952878) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053937 YP_001155730.1 CDS gltX NC_009379.1 952934 954340 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 952934..954340 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052292 YP_001155731.1 CDS Pnuc_0951 NC_009379.1 954767 955501 R KEGG: cps:CPS_2751 hypothetical protein; hypothetical protein complement(954767..955501) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052790 YP_001155732.1 CDS Pnuc_0952 NC_009379.1 955552 956427 R KEGG: dar:Daro_1174 hypothetical protein; hypothetical protein complement(955552..956427) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052495 YP_001155733.1 CDS Pnuc_0953 NC_009379.1 956557 956913 D hypothetical protein 956557..956913 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052872 YP_001155734.1 CDS Pnuc_0954 NC_009379.1 956913 957149 D PFAM: phosphopantetheine-binding; KEGG: pna:Pnap_2673 phosphopantetheine-binding; phosphopantetheine-binding protein 956913..957149 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052261 YP_001155735.1 CDS Pnuc_0955 NC_009379.1 957146 958393 D PFAM: beta-ketoacyl synthase; KEGG: pna:Pnap_2672 beta-ketoacyl synthase; beta-ketoacyl synthase 957146..958393 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053059 YP_001155736.1 CDS Pnuc_0956 NC_009379.1 958396 958755 R hypothetical protein complement(958396..958755) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052332 YP_001155737.1 CDS Pnuc_0957 NC_009379.1 958766 959374 R KEGG: reh:H16_A2157 hypothetical protein; hypothetical protein complement(958766..959374) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052333 YP_001155738.1 CDS Pnuc_0958 NC_009379.1 959533 960432 D KEGG: pol:Bpro_4563 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 959533..960432 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053163 YP_001155739.1 CDS Pnuc_0959 NC_009379.1 960442 961032 D PFAM: protein of unknown function UPF0227; KEGG: bbr:BB4394 hypothetical protein; hypothetical protein 960442..961032 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053326 YP_001155740.1 CDS Pnuc_0960 NC_009379.1 961120 961689 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpt:Mpe_A0423 hypothetical protein; HNH endonuclease 961120..961689 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053328 YP_001155741.1 CDS Pnuc_0961 NC_009379.1 961701 962675 D KEGG: bpm:BURPS1710b_0598 hypothetical protein; hypothetical protein 961701..962675 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052675 YP_001155742.1 CDS Pnuc_0962 NC_009379.1 962679 963203 R PFAM: Ion transport 2 domain protein; KEGG: rde:RD1_4108 hypothetical protein; Ion transport 2 domain-containing protein complement(962679..963203) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053471 YP_001155743.1 CDS Pnuc_0963 NC_009379.1 963264 963974 R PFAM: Ankyrin; KEGG: reu:Reut_A1438 ankyrin; ankyrin complement(963264..963974) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052818 YP_001155744.1 CDS Pnuc_0964 NC_009379.1 963971 964762 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: reh:H16_A1573 Mg-dependent DNase; TatD family hydrolase complement(963971..964762) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052891 YP_001155745.1 CDS Pnuc_0965 NC_009379.1 964794 965927 R KEGG: rme:Rmet_1827 DNA polymerase III, delta prime subunit; DNA-directed DNA polymerase complement(964794..965927) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053745 YP_001155746.1 CDS Pnuc_0966 NC_009379.1 965940 966584 R PFAM: thymidylate kinase; KEGG: reu:Reut_A1434 thymidylate kinase; dTMP kinase complement(965940..966584) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052962 YP_001155747.1 CDS Pnuc_0967 NC_009379.1 966599 967672 R PFAM: aminodeoxychorismate lyase; KEGG: nmu:Nmul_A1077 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(966599..967672) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053087 YP_001155748.1 CDS Pnuc_0968 NC_009379.1 967693 968703 D KEGG: bam:Bamb_1832 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 967693..968703 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053209 YP_001155749.1 CDS Pnuc_0969 NC_009379.1 968721 969578 D PFAM: protein of unknown function DUF833; KEGG: reu:Reut_A1430 protein of unknown function DUF833; hypothetical protein 968721..969578 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053214 YP_001155750.1 CDS Pnuc_0970 NC_009379.1 969582 970064 R PFAM: thioesterase superfamily protein; KEGG: reu:Reut_A1410 phenylacetic acid degradation-related protein; thioesterase superfamily protein complement(969582..970064) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053362 YP_001155751.1 CDS Pnuc_0971 NC_009379.1 970120 971586 D PFAM: protein of unknown function UPF0061; KEGG: bch:Bcen2424_1908 protein of unknown function UPF0061; hypothetical protein 970120..971586 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052157 YP_001155752.1 CDS Pnuc_0972 NC_009379.1 971616 972020 D TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: rso:RSc1747 peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase 971616..972020 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053506 YP_001155753.1 CDS Pnuc_0973 NC_009379.1 972053 972601 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 972053..972601 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053637 YP_001155754.1 CDS Pnuc_0974 NC_009379.1 972598 972882 D PFAM: BolA family protein; KEGG: rso:RSc1745 hypothetical protein; BolA family protein 972598..972882 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053882 YP_001155755.1 CDS Pnuc_0975 NC_009379.1 972941 973732 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: reh:H16_A1514 peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 972941..973732 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052232 YP_001155756.1 CDS Pnuc_0976 NC_009379.1 973746 974909 R PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A1318 MFS transporter; major facilitator transporter complement(973746..974909) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052233 YP_001155757.1 CDS Pnuc_0977 NC_009379.1 974925 976040 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(974925..976040) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052246 YP_001155758.1 CDS Pnuc_0978 NC_009379.1 976083 976538 R PFAM: CBS domain containing protein; KEGG: reh:H16_A1314 conserved hypothetical protein with CBS domain; hypothetical protein complement(976083..976538) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052275 YP_001155759.1 CDS Pnuc_0979 NC_009379.1 976616 977464 R TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: bte:BTH_I2618 YihY family protein; ribonuclease BN complement(976616..977464) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052283 YP_001155760.1 CDS Pnuc_0980 NC_009379.1 977487 978095 D PFAM: flavodoxin/nitric oxide synthase; KEGG: rme:Rmet_1130 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 977487..978095 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052493 YP_001155761.1 CDS Pnuc_0981 NC_009379.1 978105 978497 D KEGG: bxe:Bxe_A1352 hypothetical protein; hypothetical protein 978105..978497 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052387 YP_001155762.1 CDS Pnuc_0982 NC_009379.1 978494 979912 D PFAM: FAD linked oxidase domain protein; KEGG: bte:BTH_I2621 oxidoreductase, FAD-binding; FAD linked oxidase domain-containing protein 978494..979912 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052391 YP_001155763.1 CDS Pnuc_0983 NC_009379.1 980231 981169 R PFAM: alpha/beta hydrolase fold; KEGG: reh:H16_A0197 predicted hydrolase or acyltransferase; alpha/beta hydrolase complement(980231..981169) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052392 YP_001155764.1 CDS Pnuc_0984 NC_009379.1 981219 981482 R KEGG: rme:Rmet_3579 calcium-binding EF-hand; hypothetical protein complement(981219..981482) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052435 YP_001155765.1 CDS Pnuc_0985 NC_009379.1 981486 982175 R KEGG: bpe:BP0876 lipoprotein; lipoprotein complement(981486..982175) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052451 YP_001155766.1 CDS Pnuc_0986 NC_009379.1 982204 982602 R hypothetical protein complement(982204..982602) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052462 YP_001155767.1 CDS Pnuc_0987 NC_009379.1 982620 983354 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0446 polar amino acid transport system ATP-binding protein; ABC transporter complement(982620..983354) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052468 YP_001155768.1 CDS Pnuc_0988 NC_009379.1 983388 984056 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0611 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(983388..984056) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052478 YP_001155769.1 CDS Pnuc_0989 NC_009379.1 984078 984860 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0610 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit complement(984078..984860) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052480 YP_001155770.1 CDS Pnuc_0990 NC_009379.1 984913 985827 R PFAM: extracellular solute-binding protein, family 3; KEGG: vei:Veis_1219 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(984913..985827) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052559 YP_001155771.1 CDS Pnuc_0991 NC_009379.1 986118 987455 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr3727 NADH dehydrogenase; NADH dehydrogenase complement(986118..987455) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052570 YP_001155772.1 CDS Pnuc_0992 NC_009379.1 987812 989005 R PFAM: Choloylglycine hydrolase; KEGG: stt:t1459 secreted hydrolase; choloylglycine hydrolase complement(987812..989005) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052577 YP_001155773.1 CDS Pnuc_0993 NC_009379.1 989348 989788 R KEGG: bxe:Bxe_B2761 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein complement(989348..989788) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052714 YP_001155774.1 CDS Pnuc_0994 NC_009379.1 989876 990319 R catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase complement(989876..990319) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052760 YP_001155775.1 CDS Pnuc_0995 NC_009379.1 990350 991213 R KEGG: mpt:Mpe_A3485 nitrate transport system ATP-binding protein; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPases C and D complement(990350..991213) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052833 YP_001155776.1 CDS Pnuc_0996 NC_009379.1 991203 992063 R TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3973 nitrate ABC transporter, inner membrane subunit; nitrate ABC transporter, inner membrane subunit complement(991203..992063) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052842 YP_001155777.1 CDS Pnuc_0997 NC_009379.1 992079 993452 R KEGG: pol:Bpro_0292 ABC transporter nitrate-binding protein; ABC transporter nitrate-binding protein complement(992079..993452) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052846 YP_001155778.1 CDS Pnuc_0998 NC_009379.1 993473 994276 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(993473..994276) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052859 YP_001155779.1 CDS Pnuc_0999 NC_009379.1 994428 995723 D KEGG: reh:H16_A0359 ABC-type transporter, periplasmic component: NitT family; ABC transporter periplasmic protein 994428..995723 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052915 YP_001155780.1 CDS Pnuc_1000 NC_009379.1 995720 998170 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3276 nitrite reductase (NAD(P)H) large subunit, NirB; nitrite reductase (NAD(P)H) large subunit 995720..998170 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052918 YP_001155781.1 CDS Pnuc_1001 NC_009379.1 998163 998513 D TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: mpt:Mpe_A2318 nitrite reductase small subunit; nitrite reductase (NAD(P)H) small subunit 998163..998513 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052925 YP_001155782.1 CDS Pnuc_1002 NC_009379.1 998506 1001346 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pna:Pnap_1404 molybdopterin oxidoreductase; molybdopterin oxidoreductase 998506..1001346 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052935 YP_001155783.1 CDS Pnuc_1003 NC_009379.1 1001354 1002262 D PFAM: glycosyl transferase, family 3; KEGG: pna:Pnap_1403 glycosyl transferase, family 3; glycosyl transferase family protein 1001354..1002262 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052990 YP_001155784.1 CDS Pnuc_1004 NC_009379.1 1002266 1002775 D PFAM: HPP family protein+B94; KEGG: nmu:Nmul_A0073 conserved hypothetical membrane spanning protein; HPP family protein+B94 1002266..1002775 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052991 YP_001155785.1 CDS Pnuc_1005 NC_009379.1 1002782 1003306 R KEGG: azo:azo3102 conserved hypothetical membrane protein; hypothetical protein complement(1002782..1003306) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053035 YP_001155786.1 CDS Pnuc_1006 NC_009379.1 1003303 1004454 R PFAM: CBS domain containing protein; HPP family protein+B94; KEGG: mpt:Mpe_A0317 CBS domain protein; HPP family protein+B94 complement(1003303..1004454) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053038 YP_001155787.1 CDS Pnuc_1007 NC_009379.1 1004556 1005023 D PFAM: protein of unknown function DUF1348; KEGG: aba:Acid345_2217 protein of unknown function DUF1348; hypothetical protein 1004556..1005023 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053054 YP_001155788.1 CDS Pnuc_1008 NC_009379.1 1005007 1005606 D PFAM: nitroreductase; KEGG: pol:Bpro_4587 nitroreductase; nitroreductase 1005007..1005606 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053162 YP_001155789.1 CDS Pnuc_1009 NC_009379.1 1006211 1006579 D hypothetical protein 1006211..1006579 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052066 YP_001155790.1 CDS Pnuc_1010 NC_009379.1 1006641 1008728 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nmu:Nmul_A2510 TonB-dependent receptor; TonB-dependent receptor 1006641..1008728 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053129 YP_001155791.1 CDS glmM NC_009379.1 1008733 1010085 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1008733..1010085) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053308 YP_001155792.1 CDS Pnuc_1012 NC_009379.1 1010126 1010989 R KEGG: bml:BMA10299_A0579 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase complement(1010126..1010989) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053409 YP_001155793.1 CDS Pnuc_1013 NC_009379.1 1011005 1012870 R KEGG: rme:Rmet_2188 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(1011005..1012870) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053415 YP_001155794.1 CDS Pnuc_1014 NC_009379.1 1013041 1013715 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: rso:RSc1525 probable ribosomal RNA large subunit methyltransferase J (cell division protein ftsj); ribosomal RNA methyltransferase RrmJ/FtsJ complement(1013041..1013715) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053436 YP_001155795.1 CDS Pnuc_1015 NC_009379.1 1013843 1014469 D PFAM: protein of unknown function UPF0044; KEGG: reh:H16_A2449 predicted RNA-binding protein containing KH domain; hypothetical protein 1013843..1014469 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053443 YP_001155796.1 CDS Pnuc_1016 NC_009379.1 1014538 1015020 R KEGG: reh:H16_A2450 conserved hypothetical membrane spanning protein; hypothetical protein complement(1014538..1015020) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053454 YP_001155797.1 CDS Pnuc_1017 NC_009379.1 1015020 1015496 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: reh:H16_A2451 transcription elongation factor GreA; transcription elongation factor GreA complement(1015020..1015496) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053464 YP_001155798.1 CDS carB NC_009379.1 1015555 1018818 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(1015555..1018818) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052878 YP_001155799.1 CDS Pnuc_1019 NC_009379.1 1018818 1020011 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: bxe:Bxe_A1256 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit complement(1018818..1020011) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053547 YP_001155800.1 CDS prpE NC_009379.1 1020276 1022159 R catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase complement(1020276..1022159) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053744 YP_001155801.1 CDS Pnuc_1021 NC_009379.1 1022194 1023627 R PFAM: Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: rme:Rmet_2205 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic complement(1022194..1023627) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053669 YP_001155802.1 CDS Pnuc_1022 NC_009379.1 1023627 1024436 R PFAM: beta-lactamase domain protein; KEGG: reu:Reut_A2187 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase complement(1023627..1024436) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053672 YP_001155803.1 CDS Pnuc_1023 NC_009379.1 1024443 1025261 D PFAM: Methyltransferase type 11; KEGG: rme:Rmet_2207 methyltransferase type 11; methyltransferase type 11 1024443..1025261 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053685 YP_001155804.1 CDS rnhA NC_009379.1 1025271 1025735 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1025271..1025735 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053692 YP_001155805.1 CDS Pnuc_1025 NC_009379.1 1025846 1027159 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_3581 secretion protein HlyD; RND family efflux transporter MFP subunit 1025846..1027159 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053704 YP_001155806.1 CDS Pnuc_1026 NC_009379.1 1027156 1030254 D PFAM: acriflavin resistance protein; KEGG: mpt:Mpe_A1335 RND efflux transporter; acriflavin resistance protein 1027156..1030254 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053736 YP_001155807.1 CDS Pnuc_1027 NC_009379.1 1030254 1030964 D KEGG: bur:Bcep18194_A4426 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 1030254..1030964 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053824 YP_001155808.1 CDS Pnuc_1028 NC_009379.1 1030978 1032111 R KEGG: reu:Reut_A0462 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase complement(1030978..1032111) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053834 YP_001155809.1 CDS Pnuc_1029 NC_009379.1 1032214 1032978 R hypothetical protein complement(1032214..1032978) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053845 YP_001155810.1 CDS Pnuc_1030 NC_009379.1 1033090 1033887 R hypothetical protein complement(1033090..1033887) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053856 YP_001155811.1 CDS Pnuc_1031 NC_009379.1 1034008 1034670 R hypothetical protein complement(1034008..1034670) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053887 YP_001155812.1 CDS Pnuc_1032 NC_009379.1 1034740 1036050 D PFAM: Amidase; KEGG: bbr:BB4925 amidase; amidase 1034740..1036050 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052525 YP_001155813.1 CDS Pnuc_1033 NC_009379.1 1036059 1037036 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2118 uncharacterized protein UPF0065; hypothetical protein complement(1036059..1037036) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052226 YP_001155814.1 CDS Pnuc_1034 NC_009379.1 1037087 1038208 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rfr:Rfer_4113 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(1037087..1038208) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052852 YP_001155815.1 CDS Pnuc_1035 NC_009379.1 1038370 1039890 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: mpt:Mpe_A3524 transmembrane aldehyde dehydrogenase oxidoreductase; methylmalonate-semialdehyde dehydrogenase 1038370..1039890 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053423 YP_001155816.1 CDS Pnuc_1036 NC_009379.1 1039956 1040447 R PFAM: protein of unknown function DUF1178; KEGG: rso:RSc2046 hypothetical protein; hypothetical protein complement(1039956..1040447) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053539 YP_001155817.1 CDS Pnuc_1037 NC_009379.1 1040513 1041112 R PFAM: NUDIX hydrolase; KEGG: bte:BTH_I1076 pyrophosphatase, MutT/NUDIX family; NUDIX hydrolase complement(1040513..1041112) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053707 YP_001155818.1 CDS Pnuc_1038 NC_009379.1 1041234 1042733 R KEGG: rme:Rmet_0940 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase, chain N complement(1041234..1042733) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053976 YP_001155819.1 CDS Pnuc_1039 NC_009379.1 1042744 1044210 R KEGG: rme:Rmet_0939 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(1042744..1044210) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053788 YP_001155820.1 CDS Pnuc_1040 NC_009379.1 1044235 1046292 R KEGG: rso:RSc2051 probable transmembrane NADH dehydrogenase I (chain L) oxidoreductase; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L complement(1044235..1046292) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052266 YP_001155821.1 CDS Pnuc_1041 NC_009379.1 1046295 1046603 R PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rso:RSc2052 probable transmembrane NADH dehydrogenase I (chain K) oxidoreductase; NADH-ubiquinone oxidoreductase, chain 4L complement(1046295..1046603) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052359 YP_001155822.1 CDS Pnuc_1042 NC_009379.1 1046600 1047247 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: rso:RSc2053 probable transmembrane NADH dehydrogenase I (chain J) oxidoreductase; NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 complement(1046600..1047247) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052828 YP_001155823.1 CDS Pnuc_1043 NC_009379.1 1047268 1047759 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(1047268..1047759) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052977 YP_001155824.1 CDS Pnuc_1044 NC_009379.1 1047771 1048844 R PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: rso:RSc2055 probable transmembrane NADH dehydrogenase I (chain H) oxidoreductase; respiratory-chain NADH dehydrogenase subunit 1 complement(1047771..1048844) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052898 YP_001155825.1 CDS Pnuc_1045 NC_009379.1 1048853 1051168 R TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase; KEGG: rso:RSc2056 probable NADH dehydrogenase I (chain G) oxidoreductase; NADH-quinone oxidoreductase subunit G complement(1048853..1051168) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052893 YP_001155826.1 CDS Pnuc_1046 NC_009379.1 1051200 1052498 R KEGG: bur:Bcep18194_A5572 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH-quinone oxidoreductase subunit F complement(1051200..1052498) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052553 YP_001155827.1 CDS Pnuc_1047 NC_009379.1 1052495 1053001 R TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: rso:RSc2058 probable NADH dehydrogenase I (chain E) oxidoreductase; NADH-quinone oxidoreductase subunit E complement(1052495..1053001) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053818 YP_001155828.1 CDS Pnuc_1048 NC_009379.1 1053025 1054278 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(1053025..1054278) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051929 YP_001155829.1 CDS Pnuc_1049 NC_009379.1 1054282 1054881 R KEGG: reu:Reut_A0963 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C complement(1054282..1054881) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053954 YP_001155830.1 CDS Pnuc_1050 NC_009379.1 1054885 1055367 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(1054885..1055367) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051917 YP_001155831.1 CDS Pnuc_1051 NC_009379.1 1055373 1055732 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(1055373..1055732) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051992 YP_001155832.1 CDS Pnuc_1052 NC_009379.1 1056012 1056356 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: rme:Rmet_0926 preprotein translocase, SecG subunit; preprotein translocase subunit SecG complement(1056012..1056356) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052034 YP_001155833.1 CDS tpiA NC_009379.1 1056379 1057137 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1056379..1057137) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053441 YP_001155834.1 CDS Pnuc_1054 NC_009379.1 1057154 1058152 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_A0958 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase complement(1057154..1058152) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053804 YP_001155835.1 CDS Pnuc_1055 NC_009379.1 1058183 1060351 R PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: reh:H16_A1045 polyribonucleotide nucleotidyltransferase; polynucleotide phosphorylase complement(1058183..1060351) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053800 YP_001155836.1 CDS rpsO NC_009379.1 1060620 1060889 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(1060620..1060889) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053109 YP_001155837.1 CDS Pnuc_1057 NC_009379.1 1061098 1061691 D KEGG: pat:Patl_4149 lipoprotein; lipoprotein 1061098..1061691 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053564 YP_001155838.1 CDS Pnuc_1058 NC_009379.1 1061718 1063265 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(1061718..1063265) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052585 YP_001155839.1 CDS Pnuc_1059 NC_009379.1 1063500 1064360 R KEGG: rme:Rmet_0916 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(1063500..1064360) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052162 YP_001155840.1 CDS Pnuc_1060 NC_009379.1 1064383 1065030 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(1064383..1065030) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051935 YP_001155841.1 CDS Pnuc_1061 NC_009379.1 1065070 1066086 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(1065070..1066086) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052118 YP_001155842.1 CDS ilvH NC_009379.1 1066138 1066629 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(1066138..1066629) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053483 YP_001155843.1 CDS Pnuc_1063 NC_009379.1 1066629 1068416 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: reh:H16_A1035 acetolactate synthase III (valine sensitive); acetolactate synthase large subunit complement(1066629..1068416) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053500 YP_001155844.1 CDS Pnuc_1064 NC_009379.1 1068610 1069179 D PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bur:Bcep18194_A5593 RNA polymerase sigma-70 factor; ECF subfamily RNA polymerase sigma-24 factor 1068610..1069179 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053507 YP_001155845.1 CDS Pnuc_1065 NC_009379.1 1069176 1069643 D KEGG: rfr:Rfer_3320 transmembrane protein; transmembrane protein 1069176..1069643 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053907 YP_001155846.1 CDS Pnuc_1066 NC_009379.1 1069664 1070293 D KEGG: bps:BPSL1193 hypothetical protein; hypothetical protein 1069664..1070293 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053175 YP_001155847.1 CDS Pnuc_1067 NC_009379.1 1070312 1070848 D PFAM: RDD domain containing protein; KEGG: azo:azo3150 conserved hypothetical RDD family protein; RDD domain-containing protein 1070312..1070848 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053337 YP_001155848.1 CDS Pnuc_1068 NC_009379.1 1070866 1073364 R PFAM: protein of unknown function DUF214; KEGG: rso:RSc2091 probable transmembrane protein; hypothetical protein complement(1070866..1073364) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052253 YP_001155849.1 CDS Pnuc_1069 NC_009379.1 1073361 1074146 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_1638 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1073361..1074146) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052326 YP_001155850.1 CDS Pnuc_1070 NC_009379.1 1074194 1075192 R PFAM: Uncharacterized protein UPF0065; KEGG: aav:Aave_1312 uncharacterized protein UPF0065; hypothetical protein complement(1074194..1075192) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052297 YP_001155851.1 CDS Pnuc_1071 NC_009379.1 1075194 1075820 R KEGG: pca:Pcar_2752 hypothetical protein; hypothetical protein complement(1075194..1075820) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052645 YP_001155852.1 CDS Pnuc_1072 NC_009379.1 1075817 1076746 R PFAM: Mammalian cell entry related domain protein; KEGG: vvu:VV1_0009 ABC-type transport system, periplasmic component; hypothetical protein complement(1075817..1076746) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053484 YP_001155853.1 CDS Pnuc_1073 NC_009379.1 1076743 1077519 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_2750 ABC transporter, ATP-binding protein; ABC transporter complement(1076743..1077519) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053491 YP_001155854.1 CDS Pnuc_1074 NC_009379.1 1077519 1078700 R PFAM: protein of unknown function DUF140; KEGG: pca:Pcar_2749 ABC-type transport system, permease component; hypothetical protein complement(1077519..1078700) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053349 YP_001155855.1 CDS Pnuc_1075 NC_009379.1 1078883 1079383 D TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: reh:H16_A0956 transcription elongation factor; transcription elongation factor GreB 1078883..1079383 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052002 YP_001155856.1 CDS Pnuc_1076 NC_009379.1 1079396 1081720 R KEGG: reu:Reut_A2471 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA complement(1079396..1081720) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054009 YP_001155857.1 CDS Pnuc_1077 NC_009379.1 1081811 1082014 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(1081811..1082014) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053975 YP_001155858.1 CDS gmk NC_009379.1 1082059 1082697 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1082059..1082697) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051909 YP_001155859.1 CDS Pnuc_1079 NC_009379.1 1082714 1083643 R PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: rso:RSc2156 hypothetical protein; hypothetical protein complement(1082714..1083643) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053731 YP_001155860.1 CDS Pnuc_1080 NC_009379.1 1083700 1084440 D KEGG: rso:RSc2159 probable ribonuclease ph (tRNA nucleotidyltransferase) protein; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; ribonuclease PH 1083700..1084440 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053981 YP_001155861.1 CDS Pnuc_1081 NC_009379.1 1084453 1085043 D TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: dar:Daro_3852 Ham1-like protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 1084453..1085043 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052795 YP_001155862.1 CDS Pnuc_1082 NC_009379.1 1085036 1086214 D KEGG: rme:Rmet_0850 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 1085036..1086214 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053872 YP_001155863.1 CDS Pnuc_1083 NC_009379.1 1086256 1087269 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2752 uncharacterized protein UPF0065; hypothetical protein 1086256..1087269 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052685 YP_001155864.1 CDS Pnuc_1084 NC_009379.1 1087337 1089442 R PFAM: beta-lactamase domain protein; KEGG: ppr:PBPRA1265 hypothetical beta-lactamase; beta-lactamase domain-containing protein complement(1087337..1089442) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052313 YP_001155865.1 CDS Pnuc_1085 NC_009379.1 1089554 1090996 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: atc:AGR_L_216 hypothetical protein; integral membrane sensor signal transduction histidine kinase complement(1089554..1090996) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052587 YP_001155866.1 CDS Pnuc_1086 NC_009379.1 1091099 1092334 D PFAM: Patatin; KEGG: rpc:RPC_3027 patatin; patatin 1091099..1092334 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052927 YP_001155867.1 CDS Pnuc_1087 NC_009379.1 1092378 1093295 D hypothetical protein 1092378..1093295 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053102 YP_001155868.1 CDS Pnuc_1088 NC_009379.1 1093464 1095065 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: msm:MSMEG_1606 benzoylformate decarboxylase; thiamine pyrophosphate binding domain-containing protein complement(1093464..1095065) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053106 YP_001155869.1 CDS Pnuc_1089 NC_009379.1 1095273 1095674 R hypothetical protein complement(1095273..1095674) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053244 YP_001155870.1 CDS Pnuc_1090 NC_009379.1 1096354 1097490 R PFAM: FAD dependent oxidoreductase; KEGG: reh:H16_A1319 predicted dehydrogenase; FAD dependent oxidoreductase complement(1096354..1097490) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051931 YP_001155871.1 CDS Pnuc_1091 NC_009379.1 1097628 1099160 D PFAM: phosphoglucose isomerase (PGI); KEGG: rme:Rmet_1879 phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase 1097628..1099160 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053790 YP_001155872.1 CDS Pnuc_1092 NC_009379.1 1099221 1100606 D PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rme:Rmet_2716 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphomannomutase 1099221..1100606 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053208 YP_001155873.1 CDS Pnuc_1093 NC_009379.1 1100612 1100908 R hypothetical protein complement(1100612..1100908) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053964 YP_001155874.1 CDS Pnuc_1094 NC_009379.1 1100933 1102648 R PFAM: Polypeptide-transport-associated domain protein, ShlB-type; KEGG: psp:PSPPH_0780 outer membrane protein, OMP85 family; polypeptide-transport-associated domain-containing protein complement(1100933..1102648) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054006 YP_001155875.1 CDS Pnuc_1095 NC_009379.1 1102872 1134161 R TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: gbe:GbCGDNIH1_1474 hemagglutinin-related protein; outer membrane autotransporter complement(1102872..1134161) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052091 YP_001155876.1 CDS Pnuc_1096 NC_009379.1 1134373 1139667 R PFAM: sulfotransferase; TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: RNA-processing protein, HAT helix repeating-containing protein; Tetratricopeptide domain protein; KEGG: rso:RSc3163 probable TPR domain protein; sulfotransferase complement(1134373..1139667) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051991 YP_001155877.1 CDS Pnuc_1097 NC_009379.1 1139797 1141014 D KEGG: mag:amb3787 hypothetical protein; hypothetical protein 1139797..1141014 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051993 YP_001155878.1 CDS Pnuc_1098 NC_009379.1 1141042 1141836 R TIGRFAM: methyltransferase FkbM family; KEGG: rpc:RPC_4783 methyltransferase FkbM; FkbM family methyltransferase complement(1141042..1141836) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051968 YP_001155879.1 CDS Pnuc_1099 NC_009379.1 1141837 1142424 R PFAM: adenylylsulfate kinase; KEGG: pha:PSHAa0209 adenosine 5'-phosphosulfate kinase; adenylylsulfate kinase complement(1141837..1142424) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052032 YP_001155880.1 CDS Pnuc_1100 NC_009379.1 1142449 1143183 R PFAM: peptidase M48, Ste24p; KEGG: mxa:MXAN_6435 peptidase, M48 family; peptidase M48, Ste24p complement(1142449..1143183) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051967 YP_001155881.1 CDS Pnuc_1101 NC_009379.1 1143478 1144140 D PFAM: protein of unknown function DUF583; KEGG: nar:Saro_0062 protein of unknown function DUF583; hypothetical protein 1143478..1144140 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052037 YP_001155882.1 CDS Pnuc_1102 NC_009379.1 1144190 1144891 D hypothetical protein 1144190..1144891 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051918 YP_001155883.1 CDS Pnuc_1103 NC_009379.1 1144985 1146112 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1144985..1146112 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052049 YP_001155884.1 CDS Pnuc_1104 NC_009379.1 1146208 1147065 D KEGG: mpt:Mpe_A1553 nicotinate-nucleotide diphosphorylase (carboxylating); TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 1146208..1147065 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053596 YP_001155885.1 CDS Pnuc_1105 NC_009379.1 1147073 1148452 R KEGG: dar:Daro_0549 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein complement(1147073..1148452) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053770 YP_001155886.1 CDS Pnuc_1106 NC_009379.1 1148518 1150176 R KEGG: mpt:Mpe_A1551 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; L-aspartate oxidase complement(1148518..1150176) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053365 YP_001155887.1 CDS Pnuc_1107 NC_009379.1 1150447 1150788 R PFAM: PemK family protein; KEGG: gox:GOX2564 PemK-like protein; transcriptional modulator of MazE/toxin MazF complement(1150447..1150788) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053599 YP_001155888.1 CDS Pnuc_1108 NC_009379.1 1150788 1151030 R KEGG: cch:Cag_0428 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin MazE complement(1150788..1151030) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053347 YP_001155889.1 CDS Pnuc_1109 NC_009379.1 1151177 1154068 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ajs:Ajs_3470 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(1151177..1154068) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053199 YP_001155890.1 CDS Pnuc_1110 NC_009379.1 1154107 1155909 R PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: pna:Pnap_0825 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(1154107..1155909) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052312 YP_001155891.1 CDS Pnuc_1111 NC_009379.1 1156294 1158714 R PFAM: protein of unknown function DUF748; KEGG: cvi:CV1447 hypothetical protein; hypothetical protein complement(1156294..1158714) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052135 YP_001155892.1 CDS Pnuc_1112 NC_009379.1 1158794 1159387 D PFAM: protein of unknown function DUF1080; KEGG: rba:RB7152 probable secreted glycosyl hydrolase; hypothetical protein 1158794..1159387 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052948 YP_001155893.1 CDS Pnuc_1113 NC_009379.1 1159389 1159736 R KEGG: eba:ebA5924 hypothetical protein; hypothetical protein complement(1159389..1159736) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051932 YP_001155894.1 CDS Pnuc_1114 NC_009379.1 1159733 1160095 R KEGG: eba:ebA5923 hypothetical protein; hypothetical protein complement(1159733..1160095) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052607 YP_001155895.1 CDS Pnuc_1115 NC_009379.1 1160162 1160467 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein complement(1160162..1160467) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052015 YP_001155896.1 CDS Pnuc_1116 NC_009379.1 1160734 1162038 D PFAM: phage integrase family protein; KEGG: nmu:Nmul_A0922 phage integrase; phage integrase family protein 1160734..1162038 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053018 YP_001155897.1 CDS Pnuc_1117 NC_009379.1 1162012 1162755 R hypothetical protein complement(1162012..1162755) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053066 YP_001155898.1 CDS Pnuc_1118 NC_009379.1 1162748 1163854 R PFAM: SMC domain protein; KEGG: pna:Pnap_3541 ATPase-like protein; SMC domain-containing protein complement(1162748..1163854) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053207 YP_001155899.1 CDS Pnuc_1119 NC_009379.1 1164316 1164849 R hypothetical protein complement(1164316..1164849) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052524 YP_001155900.1 CDS Pnuc_1120 NC_009379.1 1165044 1165427 R hypothetical protein complement(1165044..1165427) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053616 YP_001155901.1 CDS Pnuc_1121 NC_009379.1 1165439 1166485 R KEGG: ret:RHE_CH01097 hypothetical protein; hypothetical protein complement(1165439..1166485) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053173 YP_001155902.1 CDS Pnuc_1122 NC_009379.1 1166935 1167540 D PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: oih:OB1762 ATP-dependent DNA helicase; exonuclease 1166935..1167540 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053493 YP_001155903.1 CDS Pnuc_1123 NC_009379.1 1167652 1169151 D PFAM: filamentation induced by cAMP protein Fic; KEGG: gsu:GSU2183 fic family protein; filamentation induced by cAMP protein fic 1167652..1169151 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053074 YP_001155904.1 CDS Pnuc_1124 NC_009379.1 1169271 1170452 R KEGG: ehi:30.t00029 villidin, Pfam: TolA Gelsolin HIN FdtA VHP PROSITE: GLU_RICH HP; hypothetical protein complement(1169271..1170452) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052133 YP_001155905.1 CDS Pnuc_1125 NC_009379.1 1170454 1172415 R hypothetical protein complement(1170454..1172415) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053947 YP_001155906.1 CDS Pnuc_1126 NC_009379.1 1173031 1173879 R KEGG: vvu:VV1_2420 chromosome segregation ATPase; hypothetical protein complement(1173031..1173879) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054020 YP_001155907.1 CDS Pnuc_1127 NC_009379.1 1173962 1174414 D hypothetical protein 1173962..1174414 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053999 YP_001155908.1 CDS Pnuc_1128 NC_009379.1 1174448 1175782 R KEGG: mgm:Mmc1_1690 protein of unknown function DUF264; hypothetical protein complement(1174448..1175782) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052527 YP_001155909.1 CDS Pnuc_1129 NC_009379.1 1175786 1176256 R KEGG: mes:Meso_1211 hypothetical protein; hypothetical protein complement(1175786..1176256) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053879 YP_001155910.1 CDS Pnuc_1130 NC_009379.1 1176473 1177405 R PFAM: protein of unknown function DUF1376; KEGG: xft:PD1000 hypothetical protein; hypothetical protein complement(1176473..1177405) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053884 YP_001155911.1 CDS Pnuc_1131 NC_009379.1 1177951 1178160 D PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator, AlpA 1177951..1178160 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052973 YP_001155912.1 CDS Pnuc_1132 NC_009379.1 1178188 1179858 R PFAM: restriction modification system DNA specificity domain; KEGG: ppr:PBPRA1802 hypothetical type I restriction enzyme EcoEI specificity protein (S protein); restriction modification system DNA specificity subunit complement(1178188..1179858) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052600 YP_001155913.1 CDS Pnuc_1133 NC_009379.1 1179876 1181348 R PFAM: N-6 DNA methylase; KEGG: ppu:PP_4741 type I restriction-modification system, M subunit; N-6 DNA methylase complement(1179876..1181348) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052336 YP_001155914.1 CDS Pnuc_1134 NC_009379.1 1181388 1183730 R PFAM: helicase domain protein; type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; KEGG: ppu:PP_4740 type I restriction-modification system, R subunit; EcoEI R domain-containing protein complement(1181388..1183730) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053956 YP_001155915.1 CDS Pnuc_1135 NC_009379.1 1183873 1184175 D hypothetical protein 1183873..1184175 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052372 YP_001155916.1 CDS Pnuc_1136 NC_009379.1 1184326 1185330 R KEGG: pol:Bpro_5072 hypothetical protein; hypothetical protein complement(1184326..1185330) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053510 YP_001155917.1 CDS Pnuc_1137 NC_009379.1 1185331 1186194 R KEGG: nmu:Nmul_A0110 hypothetical protein; hypothetical protein complement(1185331..1186194) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053229 YP_001155918.1 CDS Pnuc_1138 NC_009379.1 1187083 1189056 R TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2525 acetyl-coenzyme A synthetase; acetate--CoA ligase complement(1187083..1189056) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051913 YP_001155919.1 CDS Pnuc_1139 NC_009379.1 1189234 1190757 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: azo:azo2415 fumarate hydratase; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 1189234..1190757 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053776 YP_001155920.1 CDS Pnuc_1140 NC_009379.1 1190776 1191582 D KEGG: rso:RSc1956 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase 1190776..1191582 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053777 YP_001155921.1 CDS Pnuc_1141 NC_009379.1 1191579 1192283 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: bur:Bcep18194_A5527 TonB-like protein; TonB family protein 1191579..1192283 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052636 YP_001155922.1 CDS Pnuc_1142 NC_009379.1 1192289 1192981 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: pna:Pnap_2569 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1192289..1192981 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053880 YP_001155923.1 CDS Pnuc_1143 NC_009379.1 1192984 1193397 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc1965 probable biopolymer transport transmembrane protein; biopolymer transport protein ExbD/TolR 1192984..1193397 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054002 YP_001155924.1 CDS Pnuc_1144 NC_009379.1 1193413 1193877 R hypothetical protein complement(1193413..1193877) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053121 YP_001155925.1 CDS Pnuc_1145 NC_009379.1 1193916 1195106 R KEGG: tko:TK0935 TRAP-type transporter, periplasmic component; TRAP-type transport system periplasmic component-like protein complement(1193916..1195106) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053223 YP_001155926.1 CDS Pnuc_1146 NC_009379.1 1195118 1195957 R KEGG: deh:cbdb_A161 phosphate ABC transporter, phosphate-binding protein; phosphate ABC transporter, phosphate-binding protein complement(1195118..1195957) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052713 YP_001155927.1 CDS Pnuc_1147 NC_009379.1 1195954 1196745 R KEGG: dde:Dde_1062 phosphate binding protein; phosphate binding protein complement(1195954..1196745) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052098 YP_001155928.1 CDS Pnuc_1148 NC_009379.1 1196749 1197522 R KEGG: plt:Plut_1030 hypothetical protein; hypothetical protein complement(1196749..1197522) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053931 YP_001155929.1 CDS Pnuc_1149 NC_009379.1 1197574 1204227 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: mgm:Mmc1_2695 filamentous haemagglutinin family outer membrane protein; filamentous hemagglutinin outer membrane protein complement(1197574..1204227) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052469 YP_001155930.1 CDS Pnuc_1150 NC_009379.1 1204571 1207030 D PFAM: peptidase S45, penicillin amidase; KEGG: pol:Bpro_2452 penicillin amidase; penicillin amidase 1204571..1207030 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051901 YP_001155931.1 CDS Pnuc_1151 NC_009379.1 1207096 1207506 D hypothetical protein 1207096..1207506 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053260 YP_001155932.1 CDS Pnuc_1152 NC_009379.1 1207519 1207887 D hypothetical protein 1207519..1207887 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053301 YP_001155933.1 CDS purU NC_009379.1 1207938 1208792 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1207938..1208792 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053759 YP_001155934.1 CDS Pnuc_1154 NC_009379.1 1208796 1209581 R KEGG: bja:bll2732 cytochrome c; cytochrome c complement(1208796..1209581) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052134 YP_001155935.1 CDS Pnuc_1155 NC_009379.1 1209578 1209907 R KEGG: bja:bll2733 probable sulfur oxidation protein; sulfur oxidation protein complement(1209578..1209907) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053998 YP_001155936.1 CDS Pnuc_1156 NC_009379.1 1209904 1210389 R KEGG: bja:bll2734 sulfur oxidation protein SoxY; hypothetical protein complement(1209904..1210389) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052681 YP_001155937.1 CDS Pnuc_1157 NC_009379.1 1210386 1210838 R KEGG: bja:blr3511 probable cytochrome c; hypothetical protein complement(1210386..1210838) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052676 YP_001155938.1 CDS Pnuc_1158 NC_009379.1 1210866 1213082 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bja:bll2736 aldehyde dehydrogenase; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding complement(1210866..1213082) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054003 YP_001155939.1 CDS Pnuc_1159 NC_009379.1 1213092 1213541 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bja:bll2737 oxidoreductase with iron-sulfur subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(1213092..1213541) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053496 YP_001155940.1 CDS Pnuc_1160 NC_009379.1 1213672 1214022 D PFAM: LrgA family protein; KEGG: pfo:Pfl_4981 LrgA; LrgA family protein 1213672..1214022 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052683 YP_001155941.1 CDS Pnuc_1161 NC_009379.1 1214015 1214740 D PFAM: LrgB family protein; KEGG: reh:H16_A3099 effector of murein hydrolase LrgB; LrgB family protein 1214015..1214740 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053897 YP_001155942.1 CDS Pnuc_1162 NC_009379.1 1214955 1215947 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein 1214955..1215947 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052140 YP_001155943.1 CDS Pnuc_1163 NC_009379.1 1215995 1217584 D PFAM: gamma-glutamyltranspeptidase; KEGG: ajs:Ajs_4154 gamma-glutamyltransferase; gamma-glutamyltransferase 1215995..1217584 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053922 YP_001155944.1 CDS Pnuc_1164 NC_009379.1 1217592 1218929 R KEGG: hne:HNE_3264 hypothetical protein; hypothetical protein complement(1217592..1218929) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053624 YP_001155945.1 CDS Pnuc_1165 NC_009379.1 1218966 1220519 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_0232 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal; diguanylate cyclase complement(1218966..1220519) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052159 YP_001155946.1 CDS Pnuc_1166 NC_009379.1 1220516 1221706 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: vch:VC1348 response regulator; metal dependent phosphohydrolase complement(1220516..1221706) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053760 YP_001155947.1 CDS Pnuc_1167 NC_009379.1 1221945 1222958 D PFAM: glycoside hydrolase, family 8; KEGG: zmo:ZMO1086 endoglucanase Y; cellulase 1221945..1222958 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052594 YP_001155948.1 CDS Pnuc_1168 NC_009379.1 1222960 1224504 D KEGG: reu:Reut_B3520 hypothetical protein; hypothetical protein 1222960..1224504 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052126 YP_001155949.1 CDS Pnuc_1169 NC_009379.1 1224501 1224875 R PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein complement(1224501..1224875) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053966 YP_001155950.1 CDS Pnuc_1170 NC_009379.1 1224887 1228702 R PFAM: TPR repeat-containing protein; cellulose synthase operon C domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cvi:CV2675 cellulose synthase, subunit C; cellulose synthase domain-containing protein complement(1224887..1228702) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054019 YP_001155951.1 CDS Pnuc_1171 NC_009379.1 1228707 1231436 R PFAM: glycosyl transferase, family 2; type IV pilus assembly PilZ; KEGG: aae:aq_1407 cellulose synthase catalytic subunit; cellulose synthase complement(1228707..1231436) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052355 YP_001155952.1 CDS Pnuc_1172 NC_009379.1 1231443 1232144 R hypothetical protein complement(1231443..1232144) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052541 YP_001155953.1 CDS Pnuc_1173 NC_009379.1 1232144 1232488 R PFAM: diacylglycerol kinase; KEGG: nha:Nham_1484 diacylglycerol kinase; diacylglycerol kinase complement(1232144..1232488) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052902 YP_001155954.1 CDS Pnuc_1174 NC_009379.1 1232518 1233342 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aeh:Mlg_0164 diguanylate cyclase; diguanylate cyclase complement(1232518..1233342) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053386 YP_001155955.1 CDS Pnuc_1175 NC_009379.1 1233354 1234523 R KEGG: rfr:Rfer_3391 PAS/PAC sensor protein; TIGRFAM: metal dependent phophohydrolase; PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; HDOD; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(1233354..1234523) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053391 YP_001155956.1 CDS Pnuc_1176 NC_009379.1 1234674 1235165 D KEGG: tcr:510377.134 mucin-associated surface protein (MASP) Pfam: Prosystemin PROSITE: ALA_RICH; hypothetical protein 1234674..1235165 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053395 YP_001155957.1 CDS Pnuc_1177 NC_009379.1 1235365 1236408 R PFAM: dihydrouridine synthase, DuS; KEGG: reh:H16_A2289 transfer RNA-dihydrouridine synthase; tRNA-dihydrouridine synthase A complement(1235365..1236408) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052087 YP_001155958.1 CDS Pnuc_1178 NC_009379.1 1236978 1237796 R PFAM: protein of unknown function DUF81; KEGG: reu:Reut_A0650 protein of unknown function DUF81; hypothetical protein complement(1236978..1237796) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053522 YP_001155959.1 CDS Pnuc_1179 NC_009379.1 1237849 1239150 R PFAM: Amidase; KEGG: rpa:RPA2500 possible amidase; amidase complement(1237849..1239150) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053675 YP_001155960.1 CDS Pnuc_1180 NC_009379.1 1239214 1240185 R KEGG: rpa:RPA2499 possible ABC transporter, periplasmic protein; ABC transporter, periplasmic protein complement(1239214..1240185) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053651 YP_001155961.1 CDS Pnuc_1181 NC_009379.1 1240214 1241029 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2498 possible ABC transporter, permease; binding-protein-dependent transport system inner membrane protein complement(1240214..1241029) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053793 YP_001155962.1 CDS Pnuc_1182 NC_009379.1 1241026 1241814 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA2497 anion ABC transporter, ATP-binding protein; ABC transporter complement(1241026..1241814) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053945 YP_001155963.1 CDS Pnuc_1183 NC_009379.1 1242015 1242830 R KEGG: rpb:RPB_2835 hypothetical protein; hypothetical protein complement(1242015..1242830) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052274 YP_001155964.1 CDS Pnuc_1184 NC_009379.1 1242878 1244056 D PFAM: Amidase; KEGG: rpb:RPB_2085 amidase; amidase 1242878..1244056 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052441 YP_001155965.1 CDS Pnuc_1185 NC_009379.1 1244124 1245119 D KEGG: eca:ECA3956 ABC transporter, substrate binding protein; ABC transporter, substrate binding protein 1244124..1245119 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052771 YP_001155966.1 CDS Pnuc_1186 NC_009379.1 1245122 1245895 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3955 ABC transporter protein, membrane protein; binding-protein-dependent transport systems inner membrane component 1245122..1245895 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053053 YP_001155967.1 CDS Pnuc_1187 NC_009379.1 1245892 1246662 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3954 ABC transporter, ATP-binding protein; ABC transporter 1245892..1246662 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053141 YP_001155968.1 CDS Pnuc_1188 NC_009379.1 1246668 1247093 D KEGG: syw:SYNW1403 hypothetical protein; hypothetical protein 1246668..1247093 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053314 YP_001155969.1 CDS Pnuc_1190 NC_009379.1 1247658 1248278 R KEGG: rme:Rmet_0964 urease accessory protein UreG; TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; SMART: AAA ATPase; urease accessory protein UreG complement(1247658..1248278) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052281 YP_001155970.1 CDS Pnuc_1191 NC_009379.1 1248290 1248982 R PFAM: Urease accessory protein UreF; KEGG: reu:Reut_A0997 urease accessory protein UreF; urease accessory protein UreF complement(1248290..1248982) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053548 YP_001155971.1 CDS Pnuc_1192 NC_009379.1 1248972 1249568 R PFAM: UreE urease accessory domain protein domain protein; UreE urease accessory domain protein; KEGG: rso:RSc2031 probable urease accessory protein UreE; UreE urease accessory domain-containing protein complement(1248972..1249568) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053656 YP_001155972.1 CDS ureC NC_009379.1 1249577 1251280 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(1249577..1251280) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053107 YP_001155973.1 CDS Pnuc_1194 NC_009379.1 1251280 1251618 R KEGG: pau:PA14_64370 urease beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit; urease subunit beta complement(1251280..1251618) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053387 YP_001155974.1 CDS Pnuc_1195 NC_009379.1 1251615 1252247 R PFAM: HupE/UreJ protein; KEGG: mca:MCA0164 nickel-iron hydrogenase, accessory protein; HupE/UreJ protein complement(1251615..1252247) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053779 YP_001155975.1 CDS Pnuc_1196 NC_009379.1 1252259 1252561 R KEGG: reh:H16_A1081 UreA amidohydrolase (urease) gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease, gamma subunit region; urease subunit gamma complement(1252259..1252561) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052834 YP_001155976.1 CDS Pnuc_1197 NC_009379.1 1252580 1253485 R PFAM: Urease accessory protein UreD; KEGG: bam:Bamb_0782 urease accessory protein UreD; urease accessory protein UreD complement(1252580..1253485) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052599 YP_001155977.1 CDS Pnuc_1198 NC_009379.1 1253491 1254183 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2037 probable ATP-binding ABC transporter protein; ABC transporter complement(1253491..1254183) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053568 YP_001155978.1 CDS Pnuc_1199 NC_009379.1 1254186 1254983 R PFAM: ABC transporter related; KEGG: reh:H16_A1078 ABC-type transporter, ATPase component: HAAT family; ABC transporter complement(1254186..1254983) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052238 YP_001155979.1 CDS Pnuc_1200 NC_009379.1 1254980 1256122 R PFAM: inner-membrane translocator; KEGG: reh:H16_A1077 ABC-type transporter, permease component: HAAT family; inner-membrane translocator complement(1254980..1256122) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053304 YP_001155980.1 CDS Pnuc_1201 NC_009379.1 1256125 1257708 R PFAM: inner-membrane translocator; KEGG: rso:RSc2040 probable permease transporter transmembrane protein; inner-membrane translocator complement(1256125..1257708) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053444 YP_001155981.1 CDS Pnuc_1202 NC_009379.1 1257762 1259021 R KEGG: rso:RSc2041 urea/short-chain amide-binding signal peptide protein; urea/short-chain amide-binding signal peptide protein complement(1257762..1259021) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054012 YP_001155982.1 CDS Pnuc_1203 NC_009379.1 1259689 1260993 R PFAM: secretory lipase; KEGG: nfa:nfa31360 hypothetical protein; secretory lipase complement(1259689..1260993) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053453 YP_001155983.1 CDS Pnuc_1204 NC_009379.1 1261254 1261559 R hypothetical protein complement(1261254..1261559) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053051 YP_001155984.1 CDS Pnuc_1205 NC_009379.1 1261563 1262771 R KEGG: sus:Acid_4681 protein of unknown function DUF1501; hypothetical protein complement(1261563..1262771) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052029 YP_001155985.1 CDS Pnuc_1206 NC_009379.1 1262768 1264210 R KEGG: sus:Acid_5563 hypothetical protein; hypothetical protein complement(1262768..1264210) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052025 YP_001155986.1 CDS Pnuc_1207 NC_009379.1 1264260 1264592 R KEGG: rso:RSc3291 hypothetical protein; hypothetical protein complement(1264260..1264592) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052051 YP_001155987.1 CDS Pnuc_1208 NC_009379.1 1264821 1265075 R KEGG: reh:H16_A2393 hypothetical protein; hypothetical protein complement(1264821..1265075) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052127 YP_001155988.1 CDS Pnuc_1209 NC_009379.1 1265101 1265484 R KEGG: bja:bll4412 hypothetical protein; hypothetical protein complement(1265101..1265484) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053529 YP_001155989.1 CDS Pnuc_1210 NC_009379.1 1265625 1267265 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: mpt:Mpe_A3620 glutamate synthase; glutamate synthase 1265625..1267265 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052039 YP_001155990.1 CDS Pnuc_1211 NC_009379.1 1267262 1268104 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cth:Cthe_0129 metal dependent phosphohydrolase; diguanylate cyclase complement(1267262..1268104) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051995 YP_001155991.1 CDS Pnuc_1212 NC_009379.1 1268496 1269395 R PFAM: pseudouridine synthase; KEGG: pol:Bpro_2906 pseudouridine synthase; pseudouridine synthase complement(1268496..1269395) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052099 YP_001155992.1 CDS Pnuc_1213 NC_009379.1 1269443 1269658 R hypothetical protein complement(1269443..1269658) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052030 YP_001155993.1 CDS Pnuc_1214 NC_009379.1 1269674 1270888 R TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: reu:Reut_A0762 polyhydroxyalkanoate depolymerase; polyhydroxyalkanoate depolymerase complement(1269674..1270888) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051972 YP_001155994.1 CDS Pnuc_1215 NC_009379.1 1270888 1271223 R hypothetical protein complement(1270888..1271223) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051977 YP_001155995.1 CDS Pnuc_1216 NC_009379.1 1271214 1271651 R KEGG: pna:Pnap_2754 cupin 2, conserved barrel domain protein; cupin complement(1271214..1271651) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051955 YP_001155996.1 CDS Pnuc_1217 NC_009379.1 1271654 1272313 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rme:Rmet_2700 glutathione S-transferase-like protein; glutathione S-transferase domain-containing protein complement(1271654..1272313) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052161 YP_001155997.1 CDS Pnuc_1218 NC_009379.1 1272487 1275894 D PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pol:Bpro_3159 transglutaminase-like; transglutaminase domain-containing protein 1272487..1275894 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053990 YP_001155998.1 CDS Pnuc_1219 NC_009379.1 1275906 1278518 D PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rfr:Rfer_2497 protein of unknown function DUF404; hypothetical protein 1275906..1278518 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053476 YP_001155999.1 CDS Pnuc_1220 NC_009379.1 1278531 1279454 D PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pol:Bpro_3161 transglutaminase-like; transglutaminase domain-containing protein 1278531..1279454 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053911 YP_001156000.1 CDS Pnuc_1221 NC_009379.1 1279460 1280287 R KEGG: reu:Reut_A0387 hypothetical protein; hypothetical protein complement(1279460..1280287) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053974 YP_001156001.1 CDS Pnuc_1222 NC_009379.1 1280317 1282671 R PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: nmu:Nmul_A1585 RNA binding S1; RNA-binding S1 domain-containing protein complement(1280317..1282671) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053202 YP_001156002.1 CDS Pnuc_1223 NC_009379.1 1282728 1283909 D PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_3546 major facilitator superfamily MFS_1; major facilitator transporter 1282728..1283909 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053222 YP_001156003.1 CDS Pnuc_1224 NC_009379.1 1283969 1285786 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: reu:Reut_A2021 small GTP-binding protein domain:GTP-binding protein TypA; GTP-binding protein TypA complement(1283969..1285786) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053220 YP_001156004.1 CDS Pnuc_1225 NC_009379.1 1285853 1286761 R KEGG: rso:RSc1291 probable tRNA pseudouridine synthase B protein; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B complement(1285853..1286761) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053218 YP_001156005.1 CDS rbfA NC_009379.1 1286765 1287133 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(1286765..1287133) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053216 YP_001156006.1 CDS infB NC_009379.1 1287154 1289916 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(1287154..1289916) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052887 YP_001156007.1 CDS nusA NC_009379.1 1289930 1291411 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(1289930..1291411) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053470 YP_001156008.1 CDS Pnuc_1229 NC_009379.1 1291408 1291899 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(1291408..1291899) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052335 YP_001156009.1 CDS Pnuc_1230 NC_009379.1 1292072 1293835 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: reh:H16_A2309 predicted 16S rRNA uridine-516 pseudouridylate synthase or related pseudouridylate synthase; pseudouridine synthase complement(1292072..1293835) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052877 YP_001156010.1 CDS Pnuc_1231 NC_009379.1 1293842 1294606 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: reu:Reut_A2032 prokaryotic chromosome segregation and condensation protein ScpB; transcriptional regulator complement(1293842..1294606) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052875 YP_001156011.1 CDS Pnuc_1232 NC_009379.1 1294758 1295663 D PFAM: Patatin; KEGG: rso:RSc1178 probable lipoprotein transmembrane; patatin 1294758..1295663 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052155 YP_001156012.1 CDS Pnuc_1233 NC_009379.1 1295712 1296356 R PFAM: NLP/P60 protein; KEGG: bte:BTH_I1982 NLP/P60 family protein; NLP/P60 protein complement(1295712..1296356) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052156 YP_001156013.1 CDS Pnuc_1234 NC_009379.1 1296493 1298130 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_2143 ABC transporter-related protein; ABC transporter complement(1296493..1298130) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052153 YP_001156014.1 CDS Pnuc_1235 NC_009379.1 1298127 1299152 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_A2407 ABC-type transporter, permease component: PepT family; binding-protein-dependent transport systems inner membrane component complement(1298127..1299152) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052152 YP_001156015.1 CDS Pnuc_1236 NC_009379.1 1299149 1300213 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_A2128 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(1299149..1300213) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052154 YP_001156016.1 CDS Pnuc_1237 NC_009379.1 1300225 1302093 R PFAM: extracellular solute-binding protein, family 5; KEGG: reu:Reut_A2129 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(1300225..1302093) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052874 YP_001156017.1 CDS Pnuc_1238 NC_009379.1 1302144 1302929 D KEGG: pol:Bpro_2419 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1302144..1302929 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052876 YP_001156018.1 CDS Pnuc_1239 NC_009379.1 1302926 1304254 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: azo:azo2963 chromate transport protein; chromate transporter 1302926..1304254 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052314 YP_001156019.1 CDS Pnuc_1240 NC_009379.1 1304359 1305312 D PFAM: Integrase, catalytic region; KEGG: xom:XOO_3705 IS1112 transposase; integrase catalytic subunit 1304359..1305312 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052520 YP_001156020.1 CDS Pnuc_1241 NC_009379.1 1305340 1306224 D KEGG: pna:Pnap_2143 hypothetical protein; hypothetical protein 1305340..1306224 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053215 YP_001156021.1 CDS Pnuc_1242 NC_009379.1 1306249 1307625 D PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD; MmgE/PrpD family protein 1306249..1307625 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053217 YP_001156022.1 CDS Pnuc_1243 NC_009379.1 1307651 1308499 D PFAM: HpcH/HpaI aldolase; KEGG: pna:Pnap_2139 HpcH/HpaI aldolase; HpcH/HpaI aldolase 1307651..1308499 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052831 YP_001156023.1 CDS Pnuc_1244 NC_009379.1 1308591 1309583 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0579 uncharacterized protein UPF0065; hypothetical protein 1308591..1309583 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053221 YP_001156024.1 CDS Pnuc_1245 NC_009379.1 1309650 1310270 R KEGG: pfl:PFL_3848 hypothetical protein; hypothetical protein complement(1309650..1310270) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053171 YP_001156025.1 CDS Pnuc_1246 NC_009379.1 1310267 1311520 R KEGG: pna:Pnap_3075 BNR/Asp-box repeat protein; BNR/Asp-box repeat-containing protein complement(1310267..1311520) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053534 YP_001156026.1 CDS Pnuc_1247 NC_009379.1 1311517 1313238 R PFAM: glycosyl transferase, family 39; KEGG: pol:Bpro_0463 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like; glycosyl transferase family protein complement(1311517..1313238) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053219 YP_001156027.1 CDS Pnuc_1248 NC_009379.1 1313560 1314255 R hypothetical protein complement(1313560..1314255) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053180 YP_001156028.1 CDS Pnuc_1249 NC_009379.1 1314374 1315114 D KEGG: pin:Ping_2652 integrase, catalytic region; integrase, catalytic region 1314374..1315114 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053622 YP_001156029.1 CDS Pnuc_1250 NC_009379.1 1315274 1316560 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: gox:GOX1323 transposase; transposase IS116/IS110/IS902 family protein complement(1315274..1316560) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053932 YP_001156030.1 CDS Pnuc_1252 NC_009379.1 1316985 1317833 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: reh:H16_A1368 exonuclease III; exodeoxyribonuclease III Xth complement(1316985..1317833) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052533 YP_001156031.1 CDS Pnuc_1253 NC_009379.1 1317826 1319280 R KEGG: rso:RSc1261 probable nitrogen assimilation regulatory response regulator transcription regulator protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family complement(1317826..1319280) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053103 YP_001156032.1 CDS Pnuc_1254 NC_009379.1 1319277 1320410 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: rso:RSc1260 probable nitrogen regulation (sensor protein kinase) transcription regulator; signal transduction histidine kinase, nitrogen specific, NtrB complement(1319277..1320410) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053904 YP_001156033.1 CDS Pnuc_1255 NC_009379.1 1320425 1321840 R KEGG: rso:RSc1258 3-hydroxylaminophenol mutase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; glutamine synthetase, type I complement(1320425..1321840) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052473 YP_001156034.1 CDS Pnuc_1256 NC_009379.1 1322047 1322910 R PFAM: molybdopterin binding domain; KEGG: rme:Rmet_2064 molybdopterin binding domain; molybdopterin binding domain-containing protein complement(1322047..1322910) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053575 YP_001156035.1 CDS Pnuc_1257 NC_009379.1 1322903 1323772 R KEGG: reu:Reut_A2061 probable transmembrane protein; transmembrane protein complement(1322903..1323772) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053805 YP_001156036.1 CDS Pnuc_1258 NC_009379.1 1323803 1324774 R KEGG: rso:RSc1254 probable transmembrane protein; transmembrane protein complement(1323803..1324774) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053748 YP_001156037.1 CDS Pnuc_1259 NC_009379.1 1324778 1325557 R PFAM: polysaccharide deacetylase; KEGG: rme:Rmet_2067 polysaccharide deacetylase; polysaccharide deacetylase complement(1324778..1325557) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052195 YP_001156038.1 CDS Pnuc_1260 NC_009379.1 1325567 1326604 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: cytochrome d1, heme region; KEGG: reh:H16_A2341 cytochrome d1 heme domain; YVTN beta-propeller repeat-containing protein complement(1325567..1326604) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052287 YP_001156039.1 CDS Pnuc_1261 NC_009379.1 1326664 1330656 R KEGG: rso:RSc1251 probable ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA complement(1326664..1330656) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052380 YP_001156040.1 CDS Pnuc_1262 NC_009379.1 1330722 1332086 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 1330722..1332086 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052450 YP_001156041.1 CDS Pnuc_1263 NC_009379.1 1332101 1332373 D PFAM: Fe(II) trafficking protein YggX; KEGG: reh:H16_A2344 Fe-S cluster protector protein; hypothetical protein 1332101..1332373 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052461 YP_001156042.1 CDS Pnuc_1264 NC_009379.1 1332633 1333343 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(1332633..1333343) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052552 YP_001156043.1 CDS Pnuc_1265 NC_009379.1 1333394 1334413 D KEGG: rso:RSc1231 probable transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 1333394..1334413 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052557 YP_001156044.1 CDS Pnuc_1266 NC_009379.1 1334480 1335823 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sus:Acid_5787 amidohydrolase; amidohydrolase complement(1334480..1335823) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052734 YP_001156045.1 CDS Pnuc_1267 NC_009379.1 1335885 1337885 R PFAM: coenzyme A transferase; KEGG: dar:Daro_0457 coenzyme A transferase; coenzyme A transferase complement(1335885..1337885) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053008 YP_001156046.1 CDS Pnuc_1268 NC_009379.1 1337937 1339337 R PFAM: Citrate transporter; KEGG: dar:Daro_0456 hypothetical protein; citrate transporter complement(1337937..1339337) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053024 YP_001156047.1 CDS Pnuc_1269 NC_009379.1 1339449 1339634 R KEGG: ajs:Ajs_3417 hypothetical protein; hypothetical protein complement(1339449..1339634) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053254 YP_001156048.1 CDS Pnuc_1270 NC_009379.1 1339651 1340406 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: reu:Reut_A2071 RNA methyltransferase TrmH, group 3; RNA methyltransferase complement(1339651..1340406) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053300 YP_001156049.1 CDS Pnuc_1271 NC_009379.1 1340426 1342813 R KEGG: reu:Reut_A2072 3'-5' exoribonuclease, VacB and RNase II:ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; Cold-shock protein, DNA-binding; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein; ribonuclease R complement(1340426..1342813) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053248 YP_001156050.1 CDS Pnuc_1272 NC_009379.1 1343175 1344470 D PFAM: amino acid permease-associated region; KEGG: mac:MA2286 amino acid transporter; amino acid permease-associated region 1343175..1344470 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052054 YP_001156051.1 CDS Pnuc_1273 NC_009379.1 1344507 1344842 R PFAM: branched-chain amino acid transport; KEGG: reh:H16_A0573 predicted membrane protein; branched-chain amino acid transport complement(1344507..1344842) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053838 YP_001156052.1 CDS Pnuc_1274 NC_009379.1 1344842 1345567 R PFAM: AzlC family protein; KEGG: bxe:Bxe_A0687 branched chain amino acid efflux pump, LivE family; AzlC family protein complement(1344842..1345567) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053789 YP_001156053.1 CDS Pnuc_1275 NC_009379.1 1345576 1346073 R KEGG: cph:Cpha266_1686 hypothetical protein; hypothetical protein complement(1345576..1346073) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053962 YP_001156054.1 CDS Pnuc_1276 NC_009379.1 1346097 1346780 R PFAM: dienelactone hydrolase; KEGG: rso:RS04764 transmembrane protein; carboxymethylenebutenolidase complement(1346097..1346780) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053014 YP_001156055.1 CDS Pnuc_1277 NC_009379.1 1346791 1348023 R PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1077 general substrate transporter:major facilitator superfamily MFS_1; major facilitator transporter complement(1346791..1348023) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053574 YP_001156056.1 CDS Pnuc_1278 NC_009379.1 1348095 1348610 D hypothetical protein 1348095..1348610 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052778 YP_001156057.1 CDS Pnuc_1279 NC_009379.1 1348597 1349091 R KEGG: pub:SAR11_1188 hypothetical protein; hypothetical protein complement(1348597..1349091) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052423 YP_001156058.1 CDS Pnuc_1280 NC_009379.1 1349165 1351378 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(1349165..1351378) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052182 YP_001156059.1 CDS Pnuc_1281 NC_009379.1 1351439 1352779 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(1351439..1352779) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053812 YP_001156060.1 CDS Pnuc_1282 NC_009379.1 1352836 1353999 R PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: rme:Rmet_2097 tRNA synthetase, class II (G, H, P and S); tRNA synthetase complement(1352836..1353999) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052884 YP_001156061.1 CDS Pnuc_1283 NC_009379.1 1354020 1354889 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: reh:H16_A2356 membrane protease subunit, stomatin/prohibitin homolog; HflC protein complement(1354020..1354889) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053325 YP_001156062.1 CDS Pnuc_1284 NC_009379.1 1354889 1356400 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: rso:RSc1222 hypothetical transmembrane protein; HflK protein complement(1354889..1356400) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052740 YP_001156063.1 CDS Pnuc_1285 NC_009379.1 1356390 1357553 R PFAM: GTP-binding protein, HSR1-related; KEGG: reh:H16_A2358 predicted GTPase; HSR1-like GTP-binding protein complement(1356390..1357553) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051951 YP_001156064.1 CDS Pnuc_1286 NC_009379.1 1357624 1357866 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: rso:RSc1220 host factor-i protein; RNA chaperone Hfq complement(1357624..1357866) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052158 YP_001156065.1 CDS engA NC_009379.1 1358029 1359393 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(1358029..1359393) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052837 YP_001156066.1 CDS Pnuc_1288 NC_009379.1 1359390 1360556 R PFAM: Pyrrolo-quinoline quinone; KEGG: reh:H16_A2361 hypothetical protein; Pyrrolo-quinoline quinone complement(1359390..1360556) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052147 YP_001156067.1 CDS Pnuc_1289 NC_009379.1 1360556 1361215 R KEGG: reu:Reut_A2084 hypothetical protein; hypothetical protein complement(1360556..1361215) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052249 YP_001156068.1 CDS Pnuc_1290 NC_009379.1 1361275 1362603 R KEGG: reu:Reut_A2085 histidyl-tRNA synthetase, class IIa; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase complement(1361275..1362603) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053350 YP_001156069.1 CDS ispG NC_009379.1 1362628 1363899 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(1362628..1363899) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053627 YP_001156070.1 CDS Pnuc_1292 NC_009379.1 1363913 1365121 R TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rme:Rmet_2109 hypothetical protein; radical SAM protein complement(1363913..1365121) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053769 YP_001156071.1 CDS ndk NC_009379.1 1365156 1365581 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(1365156..1365581) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053747 YP_001156072.1 CDS Pnuc_1294 NC_009379.1 1365862 1366563 D PFAM: protein of unknown function UPF0005; KEGG: rso:RSc1210 hypothetical transmembrane protein; hypothetical protein 1365862..1366563 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053609 YP_001156073.1 CDS Pnuc_1295 NC_009379.1 1366896 1368326 R TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: reu:Reut_A2092 23S rRNA methyltransferase/RumA; RNA methyltransferase complement(1366896..1368326) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052822 YP_001156074.1 CDS Pnuc_1296 NC_009379.1 1368319 1369140 R KEGG: reh:H16_A2372 predicted 3'-5' exonuclease related to the exonuclease domain of PolB; 3'-5' exonuclease complement(1368319..1369140) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053166 YP_001156075.1 CDS Pnuc_1297 NC_009379.1 1369147 1369959 R PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: reu:Reut_A2096 peptidoglycan-binding LysM:peptidase M23B; peptidase M23B complement(1369147..1369959) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053082 YP_001156076.1 CDS Pnuc_1298 NC_009379.1 1369956 1370612 R KEGG: rme:Rmet_2117 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase complement(1369956..1370612) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052641 YP_001156077.1 CDS Pnuc_1299 NC_009379.1 1370609 1371394 R KEGG: rso:RSc1204 acid phosphatase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE complement(1370609..1371394) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053311 YP_001156078.1 CDS Pnuc_1300 NC_009379.1 1371397 1374474 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: mfa:Mfla_1306 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(1371397..1374474) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053146 YP_001156079.1 CDS Pnuc_1301 NC_009379.1 1374475 1375734 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: mfa:Mfla_1305 secretion protein HlyD; RND family efflux transporter MFP subunit complement(1374475..1375734) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052320 YP_001156080.1 CDS Pnuc_1302 NC_009379.1 1375744 1377261 R PFAM: outer membrane efflux protein; KEGG: mfa:Mfla_1304 outer membrane efflux protein; outer membrane efflux protein complement(1375744..1377261) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052208 YP_001156081.1 CDS Pnuc_1303 NC_009379.1 1377594 1378097 R KEGG: rfr:Rfer_0847 hypothetical protein; hypothetical protein complement(1377594..1378097) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052484 YP_001156082.1 CDS Pnuc_1304 NC_009379.1 1378156 1378974 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bxe:Bxe_A1958 TPR repeat membrane protein; TPR repeat-containing protein complement(1378156..1378974) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053696 YP_001156083.1 CDS Pnuc_1305 NC_009379.1 1379079 1382636 R PFAM: UvrD/REP helicase; KEGG: rme:Rmet_2131 UvrD/REP helicase; UvrD/REP helicase complement(1379079..1382636) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053377 YP_001156084.1 CDS Pnuc_1306 NC_009379.1 1382639 1385623 R KEGG: rso:RSc1189 hypothetical protein; hypothetical protein complement(1382639..1385623) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052217 YP_001156085.1 CDS Pnuc_1307 NC_009379.1 1385744 1386070 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rso:RSc1188 probable thioredoxin 1 (redox factor) protein; thioredoxin 1385744..1386070 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052618 YP_001156086.1 CDS rho NC_009379.1 1386367 1387629 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1386367..1387629 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053130 YP_001156087.1 CDS rpmE2 NC_009379.1 1387784 1388131 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1387784..1388131 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053265 YP_001156088.1 CDS Pnuc_1310 NC_009379.1 1388231 1389949 D KEGG: rso:RSc1181 probable inner membrane transmembrane protein; inner membrane transmembrane protein 1388231..1389949 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053227 YP_001156089.1 CDS Pnuc_1311 NC_009379.1 1389954 1391345 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rso:RSc1180 probable inner membrane transmembrane protein; MATE efflux family protein 1389954..1391345 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052655 YP_001156090.1 CDS Pnuc_1312 NC_009379.1 1391352 1392440 R KEGG: pen:PSEEN5346 hypothetical protein; hypothetical protein complement(1391352..1392440) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052937 YP_001156091.1 CDS Pnuc_1313 NC_009379.1 1392444 1393034 R TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: tbd:Tbd_2514 lipoprotein; membrane lipoprotein lipid attachment site complement(1392444..1393034) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053084 YP_001156092.1 CDS Pnuc_1314 NC_009379.1 1393058 1393414 R KEGG: pen:PSEEN5344 hypothetical protein; hypothetical protein complement(1393058..1393414) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053891 YP_001156093.1 CDS Pnuc_1315 NC_009379.1 1393427 1395133 R KEGG: tbd:Tbd_2516 hypothetical protein; hypothetical protein complement(1393427..1395133) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053234 YP_001156094.1 CDS Pnuc_1316 NC_009379.1 1395183 1396187 R PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3983 uncharacterized protein UPF0065; hypothetical protein complement(1395183..1396187) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053606 YP_001156095.1 CDS Pnuc_1317 NC_009379.1 1396222 1396785 R KEGG: plu:plu0239 hypothetical protein; hypothetical protein complement(1396222..1396785) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053613 YP_001156096.1 CDS Pnuc_1318 NC_009379.1 1397045 1397824 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1397045..1397824 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053750 YP_001156097.1 CDS Pnuc_1319 NC_009379.1 1397885 1398442 R PFAM: Lytic transglycosylase, catalytic; KEGG: aav:Aave_2727 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic complement(1397885..1398442) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053888 YP_001156098.1 CDS Pnuc_1320 NC_009379.1 1398493 1399530 R PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1396 transmembrane protein; alpha/beta hydrolase fold complement(1398493..1399530) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053465 YP_001156099.1 CDS Pnuc_1321 NC_009379.1 1399540 1400232 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bms:BR0063 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase complement(1399540..1400232) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053900 YP_001156100.1 CDS Pnuc_1322 NC_009379.1 1400263 1400556 R KEGG: pna:Pnap_3696 hypothetical protein; hypothetical protein complement(1400263..1400556) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052563 YP_001156101.1 CDS Pnuc_1323 NC_009379.1 1400629 1401630 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3949 hypothetical protein; hypothetical protein 1400629..1401630 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052141 YP_001156102.1 CDS Pnuc_1324 NC_009379.1 1401648 1402370 R TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_1108 haloacid dehalogenase, type II; haloacid dehalogenase complement(1401648..1402370) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053233 YP_001156103.1 CDS Pnuc_1325 NC_009379.1 1402376 1403368 R PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5058 uncharacterized protein UPF0065; hypothetical protein complement(1402376..1403368) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052632 YP_001156104.1 CDS Pnuc_1326 NC_009379.1 1403479 1404288 R KEGG: mca:MCA2108 hypothetical protein; hypothetical protein complement(1403479..1404288) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053972 YP_001156105.1 CDS Pnuc_1327 NC_009379.1 1404307 1405104 R PFAM: class II aldolase/adducin family protein; KEGG: pen:PSEEN2585 class II aldolase; class II aldolase/adducin family protein complement(1404307..1405104) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052201 YP_001156106.1 CDS Pnuc_1328 NC_009379.1 1405228 1406127 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bcl:ABC1122 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase complement(1405228..1406127) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052772 YP_001156107.1 CDS Pnuc_1329 NC_009379.1 1406362 1408275 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: aav:Aave_1161 ferrous iron transport protein B; ferrous iron transport protein B complement(1406362..1408275) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053781 YP_001156108.1 CDS Pnuc_1330 NC_009379.1 1408268 1408513 R PFAM: FeoA family protein; KEGG: mpt:Mpe_A1470 transport protein A; FeoA family protein complement(1408268..1408513) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053644 YP_001156109.1 CDS Pnuc_1331 NC_009379.1 1408617 1410101 D PFAM: Carbohydrate-selective porin OprB; KEGG: reu:Reut_A0411 hypothetical protein; carbohydrate-selective porin OprB 1408617..1410101 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053639 YP_001156110.1 CDS Pnuc_1332 NC_009379.1 1410137 1410760 D PFAM: Negative transcriptional regulator; KEGG: azo:azo2453 probable negative transcriptional regulator; FMN-binding negative transcriptional regulator 1410137..1410760 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052694 YP_001156111.1 CDS Pnuc_1333 NC_009379.1 1410766 1411524 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: pol:Bpro_0161 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter, periplasmic molybdate-binding protein complement(1410766..1411524) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052691 YP_001156112.1 CDS Pnuc_1334 NC_009379.1 1411598 1413235 R PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_3829 major facilitator superfamily MFS_1; major facilitator transporter complement(1411598..1413235) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052690 YP_001156113.1 CDS Pnuc_1335 NC_009379.1 1413273 1414295 R PFAM: regulatory protein, LysR; KEGG: reu:Reut_A0616 regulatory protein, LysR; molybdate metabolism transcriptional regulator complement(1413273..1414295) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053593 YP_001156114.1 CDS Pnuc_1336 NC_009379.1 1414373 1415197 D KEGG: bja:bll6227 sulfate transport system substrate-binding protein; sulfate transport system substrate-binding protein 1414373..1415197 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053958 YP_001156115.1 CDS Pnuc_1337 NC_009379.1 1415228 1415452 D PFAM: TOBE domain protein; KEGG: rpb:RPB_0855 molybdenum-pterin binding protein; TOBE domain-containing protein 1415228..1415452 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052207 YP_001156116.1 CDS Pnuc_1338 NC_009379.1 1415535 1416116 R KEGG: reu:Reut_A0482 hypothetical protein; hypothetical protein complement(1415535..1416116) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052379 YP_001156117.1 CDS Pnuc_1339 NC_009379.1 1416263 1416703 D PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2524 4-hydroxybenzoyl-CoA thioesterase; N-acetyltransferase GCN5 1416263..1416703 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052414 YP_001156118.1 CDS Pnuc_1340 NC_009379.1 1416734 1417162 D PFAM: thioesterase superfamily protein; KEGG: gox:GOX1683 hypothetical protein; thioesterase superfamily protein 1416734..1417162 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052459 YP_001156119.1 CDS Pnuc_1341 NC_009379.1 1417174 1417752 D KEGG: bbr:BB4575 hypothetical protein; hypothetical protein 1417174..1417752 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052617 YP_001156120.1 CDS Pnuc_1342 NC_009379.1 1417880 1419160 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bxe:Bxe_A0648 ATP-dependent RNA helicase 1; DEAD/DEAH box helicase 1417880..1419160 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052735 YP_001156121.1 CDS Pnuc_1343 NC_009379.1 1419212 1420321 D PFAM: transglutaminase domain protein; KEGG: azo:azo0103 conserved hypothetical secreted protein; transglutaminase domain-containing protein 1419212..1420321 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052750 YP_001156122.1 CDS Pnuc_1344 NC_009379.1 1420350 1420895 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tbd:Tbd_0272 thioredoxin family protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 1420350..1420895 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052854 YP_001156123.1 CDS Pnuc_1345 NC_009379.1 1420923 1421987 D TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rfr:Rfer_2844 selenide, water dikinase; selenide, water dikinase 1420923..1421987 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052919 YP_001156124.1 CDS Pnuc_1346 NC_009379.1 1422001 1422270 R KEGG: pna:Pnap_4882 hypothetical protein; hypothetical protein complement(1422001..1422270) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053002 YP_001156125.1 CDS Pnuc_1347 NC_009379.1 1422327 1422620 D KEGG: dar:Daro_1859 protein of unknown function DUF1330; hypothetical protein 1422327..1422620 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053046 YP_001156126.1 CDS Pnuc_1348 NC_009379.1 1422681 1422869 R hypothetical protein complement(1422681..1422869) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053126 YP_001156127.1 CDS Pnuc_1349 NC_009379.1 1423030 1424004 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0646 hypothetical protein; hypothetical protein 1423030..1424004 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053143 YP_001156128.1 CDS Pnuc_1350 NC_009379.1 1424043 1425629 D SMART: Rhodanese domain protein; KEGG: pau:PA14_30430 thiosulfate sulfurtransferase; rhodanese domain-containing protein 1424043..1425629 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053286 YP_001156129.1 CDS Pnuc_1351 NC_009379.1 1425652 1426701 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mag:amb2827 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; fumarylacetoacetate (FAA) hydrolase complement(1425652..1426701) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053292 YP_001156130.1 CDS Pnuc_1352 NC_009379.1 1426823 1427122 D hypothetical protein 1426823..1427122 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053294 YP_001156131.1 CDS Pnuc_1353 NC_009379.1 1427150 1427371 D KEGG: pat:Patl_0281 tryptophan-rich Ignore; hypothetical protein 1427150..1427371 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053309 YP_001156132.1 CDS Pnuc_1354 NC_009379.1 1427419 1427946 R hypothetical protein complement(1427419..1427946) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053321 YP_001156133.1 CDS Pnuc_1355 NC_009379.1 1428052 1428441 D PFAM: globin; KEGG: ajs:Ajs_3454 globin; globin 1428052..1428441 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053401 YP_001156134.1 CDS Pnuc_1356 NC_009379.1 1428566 1429333 D PFAM: Integral membrane protein TerC; KEGG: mpt:Mpe_A1788 hypothetical protein; integral membrane protein TerC 1428566..1429333 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053428 YP_001156135.1 CDS Pnuc_1357 NC_009379.1 1429317 1430546 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMc00763 hypothetical protein; hypothetical protein complement(1429317..1430546) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053538 YP_001156136.1 CDS Pnuc_1358 NC_009379.1 1430550 1431062 R KEGG: rde:RD1_4108 hypothetical protein; hypothetical protein complement(1430550..1431062) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053553 YP_001156137.1 CDS Pnuc_1359 NC_009379.1 1431102 1431959 R PFAM: conserved hypothetical protein 730; KEGG: ajs:Ajs_2487 conserved hypothetical protein 730; hypothetical protein complement(1431102..1431959) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053586 YP_001156138.1 CDS Pnuc_1360 NC_009379.1 1432133 1432336 D hypothetical protein 1432133..1432336 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053664 YP_001156139.1 CDS Pnuc_1361 NC_009379.1 1432391 1433200 D SMART: extracellular solute-binding protein, family 3; KEGG: bam:Bamb_6273 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1432391..1433200 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053680 YP_001156140.1 CDS Pnuc_1362 NC_009379.1 1433211 1434626 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dar:Daro_0992 beta-lactamase-like:RNA-metabolising metallo-beta-lactamase; RNA-metabolising metallo-beta-lactamase complement(1433211..1434626) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053715 YP_001156141.1 CDS Pnuc_1363 NC_009379.1 1434691 1435575 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; KEGG: dar:Daro_2379 hypothetical protein; carbohydrate kinase 1434691..1435575 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053739 YP_001156142.1 CDS Pnuc_1364 NC_009379.1 1435582 1436559 D PFAM: protein of unknown function DUF6, transmembrane; Protein of unknown function DUF250; KEGG: reh:H16_A0930 permease of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 1435582..1436559 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053860 YP_001156143.1 CDS Pnuc_1365 NC_009379.1 1436574 1436855 R KEGG: rfr:Rfer_2762 protein tyrosine phosphatase, receptor type, F-like; protein tyrosine phosphatase, receptor type, F-like protein complement(1436574..1436855) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054007 YP_001156144.1 CDS Pnuc_1366 NC_009379.1 1436912 1437565 D KEGG: nar:Saro_2686 hypothetical protein; hypothetical protein 1436912..1437565 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052825 YP_001156145.1 CDS Pnuc_1367 NC_009379.1 1437629 1438777 R KEGG: dar:Daro_2722 aminotransferase, class V; class V aminotransferase complement(1437629..1438777) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052165 YP_001156146.1 CDS Pnuc_1368 NC_009379.1 1438831 1439778 R PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4641 hypothetical protein; hypothetical protein complement(1438831..1439778) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053520 YP_001156147.1 CDS Pnuc_1369 NC_009379.1 1439782 1440711 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bha:BH2000 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(1439782..1440711) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053650 YP_001156148.1 CDS Pnuc_1370 NC_009379.1 1440786 1441676 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: mpt:Mpe_A3051 permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein complement(1440786..1441676) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052341 YP_001156149.1 CDS Pnuc_1371 NC_009379.1 1441819 1442964 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: azo:azo1016 L-lactate dehydrogenase; L-lactate dehydrogenase (cytochrome) 1441819..1442964 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053647 YP_001156150.1 CDS Pnuc_1372 NC_009379.1 1443094 1443765 D KEGG: bxe:Bxe_B2086 hypothetical protein; hypothetical protein 1443094..1443765 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053375 YP_001156151.1 CDS Pnuc_1373 NC_009379.1 1444045 1444587 D PFAM: cytochrome B561; KEGG: reh:H16_A0747 cytochrome b561; cytochrome B561 1444045..1444587 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053980 YP_001156152.1 CDS Pnuc_1374 NC_009379.1 1444837 1445937 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: syf:Synpcc7942_0473 NADH:flavin oxidoreductase Old Yellow enzyme family-like; NADH:flavin oxidoreductase complement(1444837..1445937) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053648 YP_001156153.1 CDS Pnuc_1375 NC_009379.1 1446017 1446952 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mag:amb0589 transcriptional regulator; LysR family transcriptional regulator complement(1446017..1446952) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053645 YP_001156154.1 CDS Pnuc_1376 NC_009379.1 1447105 1447590 D PFAM: Rubrerythrin; KEGG: eba:ebA6038 rubrerythrin/nigerythrin-like protein; rubrerythrin 1447105..1447590 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052678 YP_001156155.1 CDS Pnuc_1377 NC_009379.1 1447652 1447819 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: abo:ABO_0163 rubredoxin; rubredoxin-type Fe(Cys)4 protein 1447652..1447819 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052821 YP_001156156.1 CDS Pnuc_1378 NC_009379.1 1447862 1449031 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nmu:Nmul_A0171 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1447862..1449031 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052100 YP_001156157.1 CDS Pnuc_1379 NC_009379.1 1449111 1449935 R hypothetical protein complement(1449111..1449935) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051953 YP_001156158.1 CDS Pnuc_1380 NC_009379.1 1450095 1450910 R hypothetical protein complement(1450095..1450910) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051927 YP_001156159.1 CDS Pnuc_1381 NC_009379.1 1450986 1453265 R PFAM: type II and III secretion system protein; Tetratricopeptide TPR_2 repeat protein; KEGG: plt:Plut_1029 type II secretory pathway component PulD-like; type II and III secretion system protein complement(1450986..1453265) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051924 YP_001156160.1 CDS Pnuc_1382 NC_009379.1 1453485 1454315 D PFAM: DSBA oxidoreductase; KEGG: maq:Maqu_4051 DsbA oxidoreductase; DSBA oxidoreductase 1453485..1454315 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052095 YP_001156161.1 CDS Pnuc_1383 NC_009379.1 1454342 1454998 R hypothetical protein complement(1454342..1454998) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052056 YP_001156162.1 CDS Pnuc_1384 NC_009379.1 1455086 1455679 R KEGG: pub:SAR11_0982 hypothetical protein; hypothetical protein complement(1455086..1455679) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052330 YP_001156163.1 CDS Pnuc_1385 NC_009379.1 1455713 1456291 R PFAM: manganese and iron superoxide dismutase; KEGG: rso:RSc2526 probable superoxide dismutase [Fe] protein; superoxide dismutase complement(1455713..1456291) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052115 YP_001156164.1 CDS Pnuc_1386 NC_009379.1 1456513 1457289 R TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pna:Pnap_2539 3-hydroxybutyrate dehydrogenase; 3-hydroxybutyrate dehydrogenase complement(1456513..1457289) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053921 YP_001156165.1 CDS Pnuc_1387 NC_009379.1 1457345 1457848 R KEGG: rme:Rmet_0366 hypothetical protein; hypothetical protein complement(1457345..1457848) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053335 YP_001156166.1 CDS Pnuc_1388 NC_009379.1 1458051 1459220 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0583 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase 1458051..1459220 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053796 YP_001156167.1 CDS Pnuc_1389 NC_009379.1 1459233 1460417 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pna:Pnap_2141 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1459233..1460417 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053705 YP_001156168.1 CDS cls NC_009379.1 1460414 1461892 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase complement(1460414..1461892) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053561 YP_001156169.1 CDS Pnuc_1391 NC_009379.1 1461889 1462641 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: nmu:Nmul_A0606 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(1461889..1462641) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052664 YP_001156170.1 CDS Pnuc_1392 NC_009379.1 1462909 1463604 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:ebA5015 permease component of ABC transporter; binding-protein-dependent transport system inner membrane protein 1462909..1463604 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053259 YP_001156171.1 CDS Pnuc_1393 NC_009379.1 1463597 1464304 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1759 ABC transporter related; ABC transporter 1463597..1464304 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052318 YP_001156172.1 CDS Pnuc_1394 NC_009379.1 1464305 1464616 R KEGG: mpt:Mpe_A1174 hypothetical protein; hypothetical protein complement(1464305..1464616) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053019 YP_001156173.1 CDS Pnuc_1395 NC_009379.1 1464621 1465682 R TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: reh:H16_A2934 cytochrome b subunit of formate dehydrogenase; formate dehydrogenase, gamma subunit complement(1464621..1465682) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052988 YP_001156174.1 CDS Pnuc_1396 NC_009379.1 1465730 1465966 R KEGG: rme:Rmet_2759 lipoprotein; hypothetical protein complement(1465730..1465966) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052934 YP_001156175.1 CDS Pnuc_1397 NC_009379.1 1465966 1466622 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: reu:Reut_A0683 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin complement(1465966..1466622) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052847 YP_001156176.1 CDS Pnuc_1398 NC_009379.1 1466650 1469628 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: reu:Reut_A0682 twin-arginine translocation pathway signal; molybdopterin oxidoreductase complement(1466650..1469628) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052712 YP_001156177.1 CDS Pnuc_1399 NC_009379.1 1470033 1470683 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: rme:Rmet_2763 cytoplasmic chaperone TorD; cytoplasmic chaperone TorD family protein complement(1470033..1470683) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052701 YP_001156178.1 CDS Pnuc_1400 NC_009379.1 1470680 1472770 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: reu:Reut_A0679 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin complement(1470680..1472770) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052580 YP_001156179.1 CDS Pnuc_1401 NC_009379.1 1472782 1473336 R KEGG: rfr:Rfer_3265 hypothetical protein; hypothetical protein complement(1472782..1473336) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052422 YP_001156180.1 CDS Pnuc_1402 NC_009379.1 1473336 1473869 R KEGG: rme:Rmet_2766 hypothetical protein; hypothetical protein complement(1473336..1473869) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052402 YP_001156181.1 CDS Pnuc_1403 NC_009379.1 1473876 1474964 R PFAM: protein of unknown function DUF59; KEGG: rso:RSc2379 probable mrp protein ATP-binding; hypothetical protein complement(1473876..1474964) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052247 YP_001156182.1 CDS Pnuc_1404 NC_009379.1 1475103 1476113 R PFAM: phosphate transporter; KEGG: pol:Bpro_1687 phosphate transporter; phosphate transporter complement(1475103..1476113) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053378 YP_001156183.1 CDS Pnuc_1405 NC_009379.1 1476125 1476772 R PFAM: protein of unknown function DUF47; KEGG: aav:Aave_1880 protein of unknown function DUF47; hypothetical protein complement(1476125..1476772) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053628 YP_001156184.1 CDS Pnuc_1406 NC_009379.1 1476840 1477034 R PFAM: Heavy metal transport/detoxification protein; KEGG: reh:H16_A3669 copper chaperone, heavy metal ion binding; heavy metal transport/detoxification protein complement(1476840..1477034) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053802 YP_001156185.1 CDS Pnuc_1407 NC_009379.1 1477086 1479362 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pna:Pnap_4090 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1477086..1479362 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053196 YP_001156186.1 CDS Pnuc_1408 NC_009379.1 1479379 1480191 R KEGG: reh:H16_A3301 hypothetical protein; hypothetical protein complement(1479379..1480191) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053580 YP_001156187.1 CDS Pnuc_1409 NC_009379.1 1480239 1481720 D KEGG: tcx:Tcr_1743 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like; glycosyltransferase 1480239..1481720 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053960 YP_001156188.1 CDS Pnuc_1410 NC_009379.1 1481785 1482828 D hypothetical protein 1481785..1482828 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052592 YP_001156189.1 CDS Pnuc_1411 NC_009379.1 1482847 1484106 D PFAM: glycosyl transferase, family 9; KEGG: tcx:Tcr_1745 glycosyl transferase, family 9; glycosyl transferase family protein 1482847..1484106 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053601 YP_001156190.1 CDS Pnuc_1412 NC_009379.1 1484112 1484903 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: azo:azo2159 conservd hypothetical membrane protein; PA-phosphatase-like phosphoesterase 1484112..1484903 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053315 YP_001156191.1 CDS Pnuc_1413 NC_009379.1 1484910 1485779 D PFAM: protein of unknown function DUF519; KEGG: bpm:BURPS1710b_A1916 hypothetical protein; hypothetical protein 1484910..1485779 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053137 YP_001156192.1 CDS Pnuc_1414 NC_009379.1 1485787 1486350 R PFAM: SOUL heme-binding protein; KEGG: pcr:Pcryo_1702 SOUL heme-binding protein; SOUL heme-binding protein complement(1485787..1486350) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053020 YP_001156193.1 CDS Pnuc_1415 NC_009379.1 1486419 1487363 R PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: reh:H16_A1922 muramoyl-tetrapeptide carboxypeptidase,homologs of microcin C7 resistance protein MccF; muramoyltetrapeptide carboxypeptidase complement(1486419..1487363) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052985 YP_001156194.1 CDS Pnuc_1416 NC_009379.1 1487360 1487818 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: ajs:Ajs_2282 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase complement(1487360..1487818) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052756 YP_001156195.1 CDS Pnuc_1417 NC_009379.1 1487819 1488283 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: reh:H16_A1924 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl-tetrahydropterin synthase complement(1487819..1488283) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052704 YP_001156196.1 CDS Pnuc_1418 NC_009379.1 1488318 1488971 R PFAM: Radical SAM domain protein; KEGG: rso:RSc1449 hypothetical protein; radical SAM domain-containing protein complement(1488318..1488971) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052582 YP_001156197.1 CDS Pnuc_1419 NC_009379.1 1489000 1489737 R hypothetical protein complement(1489000..1489737) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052548 YP_001156198.1 CDS Pnuc_1420 NC_009379.1 1489767 1491665 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: azo:azo2509 conserved hypothetical protein; radical SAM domain-containing protein complement(1489767..1491665) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052411 YP_001156199.1 CDS Pnuc_1421 NC_009379.1 1491675 1492472 R PFAM: protein of unknown function DUF455; KEGG: bam:Bamb_2139 protein of unknown function DUF455; hypothetical protein complement(1491675..1492472) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052277 YP_001156200.1 CDS guaA NC_009379.1 1492495 1494102 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1492495..1494102) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052993 YP_001156201.1 CDS Pnuc_1423 NC_009379.1 1494139 1495602 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(1494139..1495602) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052929 YP_001156202.1 CDS Pnuc_1424 NC_009379.1 1495629 1495979 R PFAM: protein of unknown function UPF0125; KEGG: reh:H16_A2033 hypothetical protein; hypothetical protein complement(1495629..1495979) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052248 YP_001156203.1 CDS Pnuc_1425 NC_009379.1 1495972 1496403 R PFAM: cyclase/dehydrase; KEGG: rme:Rmet_1457 cyclase/dehydrase; cyclase/dehydrase complement(1495972..1496403) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052588 YP_001156204.1 CDS smpB NC_009379.1 1496429 1496881 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1496429..1496881 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053514 YP_001156205.1 CDS Pnuc_1427 NC_009379.1 1497022 1498434 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bxe:Bxe_B0763 hypothetical protein; hypothetical protein 1497022..1498434 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053513 YP_001156206.1 CDS Pnuc_1428 NC_009379.1 1498448 1499425 D PFAM: protein of unknown function DUF403; KEGG: reu:Reut_A1084 protein of unknown function DUF403, bacteria; hypothetical protein 1498448..1499425 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053224 YP_001156207.1 CDS Pnuc_1429 NC_009379.1 1499444 1500241 D PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rso:RSc1123 hypothetical protein; transglutaminase domain-containing protein 1499444..1500241 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053165 YP_001156208.1 CDS Pnuc_1430 NC_009379.1 1500298 1501176 D KEGG: rso:RSc1124 hypothetical protein; hypothetical protein 1500298..1501176 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053096 YP_001156209.1 CDS Pnuc_1431 NC_009379.1 1501275 1501808 D KEGG: psb:Psyr_4859 ISPsy8, transposase OrfA; ISPsy8, transposase OrfA 1501275..1501808 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052184 YP_001156210.1 CDS Pnuc_1432 NC_009379.1 1501823 1502635 D PFAM: Integrase, catalytic region; KEGG: bca:BCE_A0056 IS3-family transposase, OrfB; integrase catalytic subunit 1501823..1502635 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052240 YP_001156211.1 CDS Pnuc_1433 NC_009379.1 1502719 1505124 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(1502719..1505124) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053060 YP_001156212.1 CDS Pnuc_1434 NC_009379.1 1505231 1506058 D PFAM: protein of unknown function DUF299; KEGG: rme:Rmet_1452 protein of unknown function DUF299; hypothetical protein 1505231..1506058 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052518 YP_001156213.1 CDS Pnuc_1435 NC_009379.1 1506073 1507374 R PFAM: secretory lipase; KEGG: mes:Meso_1425 secretory lipase; secretory lipase complement(1506073..1507374) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053327 YP_001156214.1 CDS Pnuc_1436 NC_009379.1 1507417 1508241 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rme:Rmet_1450 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(1507417..1508241) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053679 YP_001156215.1 CDS rnhB NC_009379.1 1508247 1508837 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(1508247..1508837) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053653 YP_001156216.1 CDS Pnuc_1438 NC_009379.1 1508834 1510039 R KEGG: bps:BPSL2146 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19; lipid-A-disaccharide synthase complement(1508834..1510039) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053655 YP_001156217.1 CDS Pnuc_1439 NC_009379.1 1510053 1510850 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(1510053..1510850) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053641 YP_001156218.1 CDS fabZ NC_009379.1 1510850 1511299 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(1510850..1511299) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052797 YP_001156219.1 CDS lpxD NC_009379.1 1511346 1512413 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(1511346..1512413) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052679 YP_001156220.1 CDS Pnuc_1442 NC_009379.1 1512419 1512946 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: rme:Rmet_1444 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp (OmpH) complement(1512419..1512946) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053366 YP_001156221.1 CDS Pnuc_1443 NC_009379.1 1512965 1515241 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rme:Rmet_1443 surface antigen (D15); surface antigen (D15) complement(1512965..1515241) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053949 YP_001156222.1 CDS Pnuc_1444 NC_009379.1 1515310 1516443 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: sat:SYN_00915 membrane metalloprotease; membrane-associated zinc metalloprotease complement(1515310..1516443) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052407 YP_001156223.1 CDS Pnuc_1445 NC_009379.1 1516465 1517649 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1516465..1517649) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052418 YP_001156224.1 CDS Pnuc_1446 NC_009379.1 1517649 1518476 R PFAM: phosphatidate cytidylyltransferase; KEGG: bch:Bcen2424_2014 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(1517649..1518476) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052479 YP_001156225.1 CDS Pnuc_1447 NC_009379.1 1518506 1519279 R KEGG: rme:Rmet_1439 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(1518506..1519279) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052357 YP_001156226.1 CDS frr NC_009379.1 1519304 1519864 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(1519304..1519864) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052367 YP_001156227.1 CDS pyrH NC_009379.1 1519876 1520586 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1519876..1520586) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052555 YP_001156228.1 CDS tsf NC_009379.1 1520783 1521667 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1520783..1521667) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052560 YP_001156229.1 CDS rpsB NC_009379.1 1521667 1522416 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1521667..1522416) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052528 YP_001156230.1 CDS Pnuc_1452 NC_009379.1 1522685 1523521 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: rme:Rmet_1434 methionine aminopeptidase, type I; methionine aminopeptidase 1522685..1523521 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052529 YP_001156231.1 CDS Pnuc_1453 NC_009379.1 1523525 1526122 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1523525..1526122 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052530 YP_001156232.1 CDS Pnuc_1454 NC_009379.1 1526200 1526610 R PFAM: DoxX family protein; KEGG: rfr:Rfer_2535 DoxX; DoxX family protein complement(1526200..1526610) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052531 YP_001156233.1 CDS Pnuc_1455 NC_009379.1 1526654 1528669 R KEGG: bxe:Bxe_A1676 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like; NAD-dependent DNA ligase complement(1526654..1528669) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052788 YP_001156234.1 CDS Pnuc_1456 NC_009379.1 1528679 1529737 R SMART: ZipA, C-terminal FtsZ-binding region; KEGG: rso:RSc1397 hypothetical protein; ZipA, C-terminal FtsZ-binding region complement(1528679..1529737) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053267 YP_001156235.1 CDS Pnuc_1457 NC_009379.1 1529756 1533277 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: reh:H16_A2062 chromosome segregation ATPase; chromosome segregation protein SMC complement(1529756..1533277) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052637 YP_001156236.1 CDS dapD NC_009379.1 1533452 1534279 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1533452..1534279 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052309 YP_001156237.1 CDS Pnuc_1459 NC_009379.1 1534290 1535441 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1534290..1535441 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052851 YP_001156238.1 CDS Pnuc_1460 NC_009379.1 1535479 1536375 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1535479..1536375 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053372 YP_001156239.1 CDS Pnuc_1461 NC_009379.1 1536388 1537752 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1536388..1537752) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053778 YP_001156240.1 CDS Pnuc_1462 NC_009379.1 1537807 1538316 R KEGG: bur:Bcep18194_A5098 hypothetical protein; hypothetical protein complement(1537807..1538316) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053380 YP_001156241.1 CDS Pnuc_1463 NC_009379.1 1538313 1540256 R PFAM: K+ potassium transporter; KEGG: rme:Rmet_1231 K+ potassium transporter; K+ potassium transporter complement(1538313..1540256) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051905 YP_001156242.1 CDS Pnuc_1464 NC_009379.1 1540586 1540957 R KEGG: rru:Rru_A0637 hypothetical protein; hypothetical protein complement(1540586..1540957) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053886 YP_001156243.1 CDS Pnuc_1465 NC_009379.1 1541006 1543411 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: nmu:Nmul_A2506 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 complement(1541006..1543411) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051954 YP_001156244.1 CDS Pnuc_1466 NC_009379.1 1543491 1544327 R PFAM: TatD-related deoxyribonuclease; KEGG: bpm:BURPS1710b_2716 hydrolase, TatD family; TatD-related deoxyribonuclease complement(1543491..1544327) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053863 YP_001156245.1 CDS Pnuc_1467 NC_009379.1 1544339 1545037 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_3699 lipoprotein releasing system, ATP-binding protein; ABC transporter complement(1544339..1545037) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052811 YP_001156246.1 CDS Pnuc_1468 NC_009379.1 1545030 1546292 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: reh:H16_A1173 ABC-type transporter, permease component: LPT family; LolC/E family lipoprotein releasing system, transmembrane protein complement(1545030..1546292) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052400 YP_001156247.1 CDS Pnuc_1469 NC_009379.1 1546339 1547319 D KEGG: bxe:Bxe_A1565 hypothetical protein; hypothetical protein 1546339..1547319 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054015 YP_001156248.1 CDS Pnuc_1470 NC_009379.1 1547316 1549076 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: bam:Bamb_2153 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1547316..1549076 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053343 YP_001156249.1 CDS Pnuc_1471 NC_009379.1 1549166 1550215 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: rme:Rmet_1036 peptide chain release factor 2; peptide chain release factor 2 1549166..1550215 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053181 YP_001156250.1 CDS lysS NC_009379.1 1550254 1551798 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1550254..1551798 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052946 YP_001156251.1 CDS Pnuc_1473 NC_009379.1 1552268 1552774 R hypothetical protein complement(1552268..1552774) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052943 YP_001156252.1 CDS Pnuc_1474 NC_009379.1 1552792 1553283 R PFAM: OmpA/MotB domain protein; KEGG: bbr:BB4238 peptidoglycan-associated lipoprotein; OmpA/MotB domain-containing protein complement(1552792..1553283) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052302 YP_001156253.1 CDS Pnuc_1475 NC_009379.1 1553368 1553721 R hypothetical protein complement(1553368..1553721) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051908 YP_001156254.1 CDS Pnuc_1476 NC_009379.1 1553929 1554903 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rpe:RPE_3624 cysteine synthase A; cysteine synthase A complement(1553929..1554903) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053756 YP_001156255.1 CDS Pnuc_1477 NC_009379.1 1555082 1555627 D KEGG: rfr:Rfer_2202 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 1555082..1555627 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052089 YP_001156256.1 CDS Pnuc_1478 NC_009379.1 1555643 1556122 R PFAM: Disulphide bond formation protein DsbB; KEGG: reh:H16_A2110 disulfide bond formation protein; disulfide bond formation protein DsbB complement(1555643..1556122) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052986 YP_001156257.1 CDS Pnuc_1479 NC_009379.1 1556274 1557050 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rso:RSc1305 probable ferredoxin--NADP reductase oxidoreductase; ferredoxin--NADP(+) reductase 1556274..1557050 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052323 YP_001156258.1 CDS Pnuc_1480 NC_009379.1 1557351 1558145 D PFAM: protein of unknown function DUF81; KEGG: reh:H16_A3000 predicted permease; hypothetical protein 1557351..1558145 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052945 YP_001156259.1 CDS Pnuc_1481 NC_009379.1 1558142 1558870 D KEGG: reu:Reut_A2694 phosphoadenosine phosphosulfate reductase; TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase; adenylylsulfate reductase 1558142..1558870 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052942 YP_001156260.1 CDS Pnuc_1482 NC_009379.1 1558893 1559816 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1558893..1559816 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053195 YP_001156261.1 CDS Pnuc_1483 NC_009379.1 1559816 1561159 D KEGG: bte:BTH_I0818 sulfate adenylyltransferase, subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; sulfate adenylyltransferase, large subunit 1559816..1561159 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053477 YP_001156262.1 CDS Pnuc_1484 NC_009379.1 1561263 1562474 D KEGG: rme:Rmet_1695 hypothetical protein; hypothetical protein 1561263..1562474 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052070 YP_001156263.1 CDS Pnuc_1485 NC_009379.1 1562520 1562876 D KEGG: mca:MCA0470 hypothetical protein; hypothetical protein 1562520..1562876 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052619 YP_001156264.1 CDS Pnuc_1486 NC_009379.1 1562932 1563243 R KEGG: reu:Reut_A3082 cytochrome c, class I; cytochrome c, class I complement(1562932..1563243) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053151 YP_001156265.1 CDS Pnuc_1487 NC_009379.1 1563254 1564474 R PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: reu:Reut_A3083 twin-arginine translocation pathway signal; oxidoreductase, molybdopterin binding complement(1563254..1564474) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052989 YP_001156266.1 CDS Pnuc_1488 NC_009379.1 1564741 1565079 R TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: mpt:Mpe_A2257 ferredoxin (2Fe-2S) protein; ferredoxin, 2Fe-2S type, ISC system complement(1564741..1565079) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053058 YP_001156267.1 CDS hscA NC_009379.1 1565110 1566975 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(1565110..1566975) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053313 YP_001156268.1 CDS Pnuc_1490 NC_009379.1 1567004 1567531 R TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: cvi:CV1091 chaperone protein hscB; co-chaperone Hsc20 complement(1567004..1567531) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052639 YP_001156269.1 CDS Pnuc_1491 NC_009379.1 1567509 1567832 R TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: bte:BTH_I1877 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA complement(1567509..1567832) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052543 YP_001156270.1 CDS Pnuc_1492 NC_009379.1 1567851 1568237 R TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: rso:RSc1020 probable nifU protein; FeS cluster assembly scaffold IscU complement(1567851..1568237) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053485 YP_001156271.1 CDS Pnuc_1493 NC_009379.1 1568270 1569529 R TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_A1553 cysteine desulfurase IscS; cysteine desulfurase IscS complement(1568270..1569529) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053338 YP_001156272.1 CDS Pnuc_1494 NC_009379.1 1569559 1570128 R TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: rso:RSc1018 hypothetical protein; BadM/Rrf2 family transcriptional regulator complement(1569559..1570128) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052421 YP_001156273.1 CDS Pnuc_1495 NC_009379.1 1570265 1572421 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(1570265..1572421) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053572 YP_001156274.1 CDS Pnuc_1496 NC_009379.1 1572581 1573780 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1572581..1573780 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053874 YP_001156275.1 CDS Pnuc_1497 NC_009379.1 1573812 1575101 D TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: reh:H16_A1150 intracellular poly(3-hydroxybutyrate) depolymerase; polyhydroxyalkanoate depolymerase 1573812..1575101 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053336 YP_001156276.1 CDS Pnuc_1498 NC_009379.1 1575156 1575848 D TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: rso:RSc1006 probable ferredoxin [4Fe-4S] protein; RnfABCDGE type electron transport complex subunit B 1575156..1575848 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053527 YP_001156277.1 CDS Pnuc_1499 NC_009379.1 1575845 1576504 D TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: reh:H16_A1147 endonuclease III protein; endonuclease III 1575845..1576504 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052254 YP_001156278.1 CDS Pnuc_1500 NC_009379.1 1576491 1576922 D KEGG: reu:Reut_A1043 hypothetical protein; hypothetical protein 1576491..1576922 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052138 YP_001156279.1 CDS Pnuc_1501 NC_009379.1 1576926 1577327 R PFAM: protein of unknown function DUF35; KEGG: rpd:RPD_3114 protein of unknown function DUF35; hypothetical protein complement(1576926..1577327) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052997 YP_001156280.1 CDS Pnuc_1502 NC_009379.1 1577324 1578496 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(1577324..1578496) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052399 YP_001156281.1 CDS Pnuc_1503 NC_009379.1 1578520 1579182 R KEGG: rme:Rmet_3668 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(1578520..1579182) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052725 YP_001156282.1 CDS Pnuc_1504 NC_009379.1 1579179 1579850 R KEGG: bpe:BP0221 3-oxoadipate CoA-transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(1579179..1579850) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052729 YP_001156283.1 CDS Pnuc_1505 NC_009379.1 1579918 1580358 R PFAM: histidine triad (HIT) protein; KEGG: bch:Bcen2424_2734 histidine triad (HIT) protein; histidine triad (HIT) protein complement(1579918..1580358) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052730 YP_001156284.1 CDS Pnuc_1506 NC_009379.1 1580465 1581763 R TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: aav:Aave_2860 isocitrate lyase; isocitrate lyase complement(1580465..1581763) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052848 YP_001156285.1 CDS Pnuc_1507 NC_009379.1 1582036 1583271 R PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A1964 major facilitator superfamily MFS_1; major facilitator transporter complement(1582036..1583271) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052257 YP_001156286.1 CDS Pnuc_1508 NC_009379.1 1583303 1584271 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0585 uncharacterized protein UPF0065; hypothetical protein complement(1583303..1584271) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052381 YP_001156287.1 CDS Pnuc_1509 NC_009379.1 1584283 1585584 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: mpt:Mpe_A2215 hypothetical protein; TRAP transporter solute receptor TAXI family protein complement(1584283..1585584) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053729 YP_001156288.1 CDS Pnuc_1510 NC_009379.1 1585634 1586821 R KEGG: dar:Daro_1405 TPR repeat; TPR repeat-containing protein complement(1585634..1586821) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053709 YP_001156289.1 CDS Pnuc_1511 NC_009379.1 1586818 1587300 R PFAM: cytochrome C biogenesis protein; KEGG: rfr:Rfer_0038 cytochrome c biogenesis protein; cytochrome C biogenesis protein complement(1586818..1587300) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053841 YP_001156290.1 CDS Pnuc_1512 NC_009379.1 1587297 1587827 R TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rfr:Rfer_0039 periplasmic protein thiol; periplasmic protein thiol--disulfide oxidoreductase DsbE complement(1587297..1587827) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053699 YP_001156291.1 CDS Pnuc_1513 NC_009379.1 1587824 1589743 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: dar:Daro_3996 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(1587824..1589743) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052425 YP_001156292.1 CDS Pnuc_1514 NC_009379.1 1589740 1590174 R PFAM: CcmE/CycJ protein; KEGG: rfr:Rfer_0041 CcmE/CycJ protein; CcmE/CycJ protein complement(1589740..1590174) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053004 YP_001156293.1 CDS Pnuc_1515 NC_009379.1 1590171 1590359 R KEGG: rfr:Rfer_0042 heme exporter protein D (CcmD); heme exporter protein D (CcmD) complement(1590171..1590359) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052928 YP_001156294.1 CDS Pnuc_1516 NC_009379.1 1590359 1591129 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: net:Neut_0061 heme exporter protein CcmC; heme exporter protein CcmC complement(1590359..1591129) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052728 YP_001156295.1 CDS Pnuc_1517 NC_009379.1 1591126 1591746 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dar:Daro_3992 cytochrome c-type biogenesis protein CcmB; heme exporter protein CcmB complement(1591126..1591746) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052622 YP_001156296.1 CDS Pnuc_1518 NC_009379.1 1591788 1592435 R KEGG: dar:Daro_3991 heme exporter protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; heme exporter protein CcmA complement(1591788..1592435) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052650 YP_001156297.1 CDS Pnuc_1519 NC_009379.1 1592641 1593216 R PFAM: YceI family protein; KEGG: dar:Daro_2796 YceI; YceI family protein complement(1592641..1593216) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053421 YP_001156298.1 CDS Pnuc_1520 NC_009379.1 1593268 1593846 R PFAM: YceI family protein; KEGG: cvi:CV3277 hypothetical protein; YceI family protein complement(1593268..1593846) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052444 YP_001156299.1 CDS Pnuc_1521 NC_009379.1 1593833 1594381 R PFAM: cytochrome B561; KEGG: azo:azo2869 conserved hypothetical cytochrome b561; cytochrome B561 complement(1593833..1594381) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052430 YP_001156300.1 CDS Pnuc_1522 NC_009379.1 1594381 1594935 R KEGG: rfr:Rfer_2573 flavodoxin; flavodoxin complement(1594381..1594935) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053006 YP_001156301.1 CDS Pnuc_1523 NC_009379.1 1594972 1595385 R PFAM: regulatory protein, MarR; KEGG: gvi:glr2761 MarR family transcriptional regulatory protein; MarR family transcriptional regulator complement(1594972..1595385) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052439 YP_001156302.1 CDS Pnuc_1524 NC_009379.1 1595502 1596359 R PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4324 beta-lactamase-like; beta-lactamase domain-containing protein complement(1595502..1596359) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052065 YP_001156303.1 CDS Pnuc_1525 NC_009379.1 1596479 1596961 R KEGG: nmu:Nmul_A1517 hypothetical protein; hypothetical protein complement(1596479..1596961) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052211 YP_001156304.1 CDS Pnuc_1526 NC_009379.1 1597014 1597994 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rme:Rmet_0197 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(1597014..1597994) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052197 YP_001156305.1 CDS Pnuc_1527 NC_009379.1 1598029 1598466 R hypothetical protein complement(1598029..1598466) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052783 YP_001156306.1 CDS Pnuc_1528 NC_009379.1 1598615 1598989 D KEGG: pol:Bpro_2412 hypothetical protein; hypothetical protein 1598615..1598989 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053461 YP_001156307.1 CDS Pnuc_1529 NC_009379.1 1598986 1599885 D PFAM: histone deacetylase superfamily; KEGG: rme:Rmet_1201 histone deacetylase superfamily; histone deacetylase superfamily protein 1598986..1599885 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053494 YP_001156308.1 CDS Pnuc_1530 NC_009379.1 1599882 1600430 R KEGG: pna:Pnap_1612 phasin family protein; hypothetical protein complement(1599882..1600430) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053554 YP_001156309.1 CDS Pnuc_1531 NC_009379.1 1600599 1601243 R KEGG: pat:Patl_4149 lipoprotein; lipoprotein complement(1600599..1601243) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053567 YP_001156310.1 CDS Pnuc_1532 NC_009379.1 1601289 1602104 R KEGG: rme:Rmet_1904 hypothetical protein; hypothetical protein complement(1601289..1602104) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053573 YP_001156311.1 CDS Pnuc_1533 NC_009379.1 1602281 1603117 R hypothetical protein complement(1602281..1603117) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053589 YP_001156312.1 CDS Pnuc_1534 NC_009379.1 1603307 1603870 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pau:PA14_01710 alkyl hydroperoxide reductase subunit C; alkyl hydroperoxide reductase 1603307..1603870 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053686 YP_001156313.1 CDS Pnuc_1535 NC_009379.1 1603971 1605551 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: pfo:Pfl_2924 pyridine nucleotide-disulphide oxidoreductase, class-II, active site; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1603971..1605551 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053670 YP_001156314.1 CDS Pnuc_1536 NC_009379.1 1605662 1605928 R hypothetical protein complement(1605662..1605928) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052958 YP_001156315.1 CDS Pnuc_1537 NC_009379.1 1605975 1606280 R KEGG: dar:Daro_2680 hypothetical protein; hypothetical protein complement(1605975..1606280) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053626 YP_001156316.1 CDS Pnuc_1538 NC_009379.1 1606426 1608297 R PFAM: Citrate transporter; Tripartite ATP-independent periplasmic transporter, DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpe:RPE_2875 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1606426..1608297) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053600 YP_001156317.1 CDS Pnuc_1539 NC_009379.1 1608294 1609307 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpe:RPE_2876 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter, DctP subunit complement(1608294..1609307) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053594 YP_001156318.1 CDS Pnuc_1540 NC_009379.1 1609432 1610235 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: vei:Veis_4817 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1609432..1610235) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053610 YP_001156319.1 CDS Pnuc_1541 NC_009379.1 1610347 1611282 R KEGG: eba:ebA232 ketopantoate reductase ApbA; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase complement(1610347..1611282) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052802 YP_001156320.1 CDS Pnuc_1542 NC_009379.1 1611310 1612302 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mpt:Mpe_B0554 iron-sulfur oxidoreductase subunit; ferredoxin complement(1611310..1612302) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052781 YP_001156321.1 CDS Pnuc_1543 NC_009379.1 1612350 1613909 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: bbr:BB4318 dioxygenase; Rieske (2Fe-2S) domain-containing protein complement(1612350..1613909) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053404 YP_001156322.1 CDS Pnuc_1544 NC_009379.1 1614035 1614700 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1715 transcriptional regulator, GntR family; GntR family transcriptional regulator 1614035..1614700 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053412 YP_001156323.1 CDS Pnuc_1545 NC_009379.1 1614747 1615586 R PFAM: class II aldolase/adducin family protein; KEGG: pol:Bpro_4082 class II aldolase/adducin-like; hypothetical protein complement(1614747..1615586) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052646 YP_001156324.1 CDS Pnuc_1546 NC_009379.1 1615705 1616631 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4083 transcriptional regulator, LysR family; LysR family transcriptional regulator 1615705..1616631 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052591 YP_001156325.1 CDS Pnuc_1547 NC_009379.1 1616628 1617497 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_4050 membrane protein; hypothetical protein 1616628..1617497 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053502 YP_001156326.1 CDS Pnuc_1548 NC_009379.1 1617501 1618364 R PFAM: alpha/beta hydrolase fold; KEGG: mpt:Mpe_A3248 EphC; alpha/beta hydrolase complement(1617501..1618364) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052844 YP_001156327.1 CDS Pnuc_1549 NC_009379.1 1618445 1619623 R PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A3706 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; extracellular ligand-binding receptor complement(1618445..1619623) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052624 YP_001156328.1 CDS Pnuc_1550 NC_009379.1 1619764 1621104 R PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; homoserine dehydrogenase, NAD-binding; SAF domain; KEGG: mpt:Mpe_A3249 hypothetical protein; SAF domain-containing protein complement(1619764..1621104) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052508 YP_001156329.1 CDS Pnuc_1551 NC_009379.1 1621171 1623810 R paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 complement(1621171..1623810) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052578 YP_001156330.1 CDS Pnuc_1552 NC_009379.1 1623838 1625256 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: azo:azo1372 probable dihydrolipoamide acetyltransferase; dehydrogenase catalytic domain-containing protein complement(1623838..1625256) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052572 YP_001156331.1 CDS Pnuc_1553 NC_009379.1 1625291 1625755 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: aav:Aave_2309 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1625291..1625755 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053282 YP_001156332.1 CDS Pnuc_1554 NC_009379.1 1625859 1626620 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sus:Acid_5492 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1625859..1626620 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052752 YP_001156333.1 CDS Pnuc_1555 NC_009379.1 1626723 1627874 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pfl:PFL_3063 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(1626723..1627874) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053281 YP_001156334.1 CDS Pnuc_1556 NC_009379.1 1627896 1628948 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pfo:Pfl_2864 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1627896..1628948) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051980 YP_001156335.1 CDS Pnuc_1557 NC_009379.1 1628970 1629866 R KEGG: bxe:Bxe_A3575 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(1628970..1629866) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052319 YP_001156336.1 CDS Pnuc_1558 NC_009379.1 1629884 1630660 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mag:amb0634 enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase/isomerase complement(1629884..1630660) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052912 YP_001156337.1 CDS Pnuc_1559 NC_009379.1 1630670 1632172 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(1630670..1632172) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053147 YP_001156338.1 CDS Pnuc_1560 NC_009379.1 1632314 1633189 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: aav:Aave_2606 transcriptional regulator, LysR family; LysR family transcriptional regulator 1632314..1633189 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052327 YP_001156339.1 CDS Pnuc_1561 NC_009379.1 1633260 1634930 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_4345 major facilitator superfamily MFS_1; major facilitator transporter complement(1633260..1634930) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053012 YP_001156340.1 CDS prpE NC_009379.1 1635132 1637009 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 1635132..1637009 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053140 YP_001156341.1 CDS Pnuc_1563 NC_009379.1 1637095 1637439 R KEGG: mxa:MXAN_6597 hypothetical protein; hypothetical protein complement(1637095..1637439) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052216 YP_001156342.1 CDS Pnuc_1564 NC_009379.1 1637830 1638372 D PFAM: FMN-binding domain protein; KEGG: rso:RSc0610 signal peptide protein; FMN-binding domain-containing protein 1637830..1638372 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053007 YP_001156343.1 CDS Pnuc_1565 NC_009379.1 1638369 1639202 D PFAM: ApbE family lipoprotein; KEGG: rso:RSc0611 probable thiamine biosynthesis lipoprotein ApbE precursor transmembrane; ApbE family lipoprotein 1638369..1639202 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052984 YP_001156344.1 CDS Pnuc_1566 NC_009379.1 1639202 1639621 D KEGG: saz:Sama_2658 hypothetical protein; hypothetical protein 1639202..1639621 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053015 YP_001156345.1 CDS Pnuc_1567 NC_009379.1 1639666 1640442 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_4554 hydroxypyruvate isomerase; hydroxypyruvate isomerase complement(1639666..1640442) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052191 YP_001156346.1 CDS Pnuc_1568 NC_009379.1 1640636 1641424 D KEGG: dar:Daro_3554 hypothetical protein; hypothetical protein 1640636..1641424 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052916 YP_001156347.1 CDS Pnuc_1569 NC_009379.1 1641480 1642109 R PFAM: protein of unknown function DUF330; KEGG: rme:Rmet_4087 protein of unknown function DUF330; hypothetical protein complement(1641480..1642109) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053043 YP_001156348.1 CDS Pnuc_1570 NC_009379.1 1642109 1643725 R PFAM: Mammalian cell entry related domain protein; KEGG: bxe:Bxe_A4000 paraquat-inducible protein; hypothetical protein complement(1642109..1643725) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053033 YP_001156349.1 CDS Pnuc_1571 NC_009379.1 1643718 1644368 R PFAM: Paraquat-inducible protein A; KEGG: ppd:Ppro_0402 paraquat-inducible protein A; paraquat-inducible protein A complement(1643718..1644368) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052470 YP_001156350.1 CDS Pnuc_1572 NC_009379.1 1644365 1644991 R PFAM: Paraquat-inducible protein A; KEGG: ppd:Ppro_0401 paraquat-inducible protein A; paraquat-inducible protein A complement(1644365..1644991) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052575 YP_001156351.1 CDS Pnuc_1573 NC_009379.1 1645223 1645636 R hypothetical protein complement(1645223..1645636) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052561 YP_001156352.1 CDS Pnuc_1574 NC_009379.1 1645853 1647349 R PFAM: Acetamidase/Formamidase; KEGG: syc:syc0006_c probable amidase; acetamidase/formamidase complement(1645853..1647349) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053426 YP_001156353.1 CDS Pnuc_1575 NC_009379.1 1647388 1648050 R KEGG: maq:Maqu_1180 anti-ECFsigma factor, ChrR; anti-ECFsigma factor ChrR complement(1647388..1648050) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053359 YP_001156354.1 CDS Pnuc_1576 NC_009379.1 1648161 1649282 R PFAM: Choloylglycine hydrolase; KEGG: bmb:BruAb1_1463 choloylglycine hydrolase family protein; choloylglycine hydrolase complement(1648161..1649282) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052187 YP_001156355.1 CDS Pnuc_1577 NC_009379.1 1649430 1650320 R KEGG: dar:Daro_1084 conserved hypothetical protein 2001; hypothetical protein complement(1649430..1650320) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052044 YP_001156356.1 CDS Pnuc_1578 NC_009379.1 1650383 1651429 R TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dar:Daro_2636 arsenical-resistance protein ACR3; arsenical-resistance protein complement(1650383..1651429) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053584 YP_001156357.1 CDS Pnuc_1579 NC_009379.1 1651426 1651905 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: net:Neut_2262 protein tyrosine phosphatase; protein tyrosine phosphatase complement(1651426..1651905) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053837 YP_001156358.1 CDS Pnuc_1580 NC_009379.1 1651902 1652231 R PFAM: regulatory protein, ArsR; KEGG: ajs:Ajs_3055 regulatory protein, ArsR; regulatory protein ArsR complement(1651902..1652231) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053854 YP_001156359.1 CDS Pnuc_1581 NC_009379.1 1652448 1652729 D KEGG: bpm:BURPS1710b_3509 hypothetical protein; hypothetical protein 1652448..1652729 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053598 YP_001156360.1 CDS Pnuc_1582 NC_009379.1 1652729 1653502 D PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344; hypothetical protein 1652729..1653502 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052886 YP_001156361.1 CDS Pnuc_1583 NC_009379.1 1653507 1654412 R PFAM: protein of unknown function DUF344; KEGG: mpt:Mpe_A1572 hypothetical protein; hypothetical protein complement(1653507..1654412) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053815 YP_001156362.1 CDS Pnuc_1584 NC_009379.1 1654463 1655230 R PFAM: phospholipid/glycerol acyltransferase; KEGG: rso:RSc0680 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase transmembrane protein; phospholipid/glycerol acyltransferase complement(1654463..1655230) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053569 YP_001156363.1 CDS Pnuc_1585 NC_009379.1 1655338 1656144 D PFAM: metallophosphoesterase; KEGG: rso:RSc2083 hypothetical protein; metallophosphoesterase 1655338..1656144 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053190 YP_001156364.1 CDS Pnuc_1586 NC_009379.1 1656141 1657169 D PFAM: glycosyl transferase, group 1; KEGG: bte:BTH_I1039 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 1656141..1657169 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053844 YP_001156365.1 CDS Pnuc_1587 NC_009379.1 1657182 1657586 D PFAM: diacylglycerol kinase; KEGG: reu:Reut_A0939 prokaryotic diacylglycerol kinase; diacylglycerol kinase 1657182..1657586 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053563 YP_001156366.1 CDS Pnuc_1588 NC_009379.1 1657628 1658551 D KEGG: rme:Rmet_2176 hypothetical protein; hemolysin-like protein 1657628..1658551 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053479 YP_001156367.1 CDS Pnuc_1589 NC_009379.1 1658608 1660170 R PFAM: Ppx/GppA phosphatase; KEGG: rso:RSc1537 probable exopolyphosphatase; Ppx/GppA phosphatase complement(1658608..1660170) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053533 YP_001156368.1 CDS Pnuc_1590 NC_009379.1 1660281 1660493 R KEGG: pin:Ping_1936 hypothetical protein; hypothetical protein complement(1660281..1660493) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053735 YP_001156369.1 CDS Pnuc_1591 NC_009379.1 1660548 1661264 R PFAM: MgtC/SapB transporter; KEGG: rme:Rmet_5334 MgtC/SapB transporter; MgtC/SapB transporter complement(1660548..1661264) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053070 YP_001156370.1 CDS Pnuc_1592 NC_009379.1 1661282 1663027 R PFAM: Alkaline phosphatase; KEGG: eca:ECA4130 alkaline phosphatase; alkaline phosphatase complement(1661282..1663027) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051925 YP_001156371.1 CDS Pnuc_1593 NC_009379.1 1663123 1664553 R KEGG: syf:Synpcc7942_1504 hypothetical protein; hypothetical protein complement(1663123..1664553) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052839 YP_001156372.1 CDS Pnuc_1594 NC_009379.1 1664607 1665110 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sfx:S2710 hypothetical arsenate reductase; protein tyrosine phosphatase complement(1664607..1665110) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052145 YP_001156373.1 CDS Pnuc_1595 NC_009379.1 1665543 1666019 D PFAM: MgtC/SapB transporter; KEGG: rpe:RPE_2025 MgtC/SapB transporter; MgtC/SapB transporter 1665543..1666019 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053452 YP_001156374.1 CDS Pnuc_1596 NC_009379.1 1666300 1667598 R TIGRFAM: Lantibiotic regulatory protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: reh:H16_A2438 signal transduction histidine kinase, phosphate regulon sensor PhoR; integral membrane sensor signal transduction histidine kinase complement(1666300..1667598) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053406 YP_001156375.1 CDS Pnuc_1597 NC_009379.1 1667664 1668377 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc1534 probable phosphate regulon two-component response regulator transcription regulator protein; two component transcriptional regulator complement(1667664..1668377) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053424 YP_001156376.1 CDS Pnuc_1598 NC_009379.1 1668393 1669100 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: reh:H16_A2440 phosphate uptake regulator PhoU; phosphate uptake regulator PhoU complement(1668393..1669100) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052409 YP_001156377.1 CDS Pnuc_1599 NC_009379.1 1669113 1669949 R KEGG: vei:Veis_1290 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase complement(1669113..1669949) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052785 YP_001156378.1 CDS Pnuc_1600 NC_009379.1 1669958 1670824 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1291 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter, inner membrane subunit PstA complement(1669958..1670824) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051999 YP_001156379.1 CDS Pnuc_1601 NC_009379.1 1670821 1671807 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1292 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter permease complement(1670821..1671807) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052457 YP_001156380.1 CDS Pnuc_1602 NC_009379.1 1671880 1672902 R TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: vei:Veis_1293 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate ABC transporter, periplasmic phosphate-binding protein complement(1671880..1672902) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052290 YP_001156381.1 CDS Pnuc_1603 NC_009379.1 1673040 1673588 R KEGG: mpt:Mpe_A0231 lipoprotein; lipoprotein complement(1673040..1673588) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053691 YP_001156382.1 CDS Pnuc_1604 NC_009379.1 1673588 1674142 R KEGG: mpt:Mpe_A0233 hypothetical protein; hypothetical protein complement(1673588..1674142) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052396 YP_001156383.1 CDS Pnuc_1605 NC_009379.1 1674151 1674552 R PFAM: thiol-disulphide oxidoreductase DCC; KEGG: pme:NATL1_15521 hypothetical protein; thiol-disulfide oxidoreductase DCC complement(1674151..1674552) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052219 YP_001156384.1 CDS Pnuc_1606 NC_009379.1 1674614 1675309 D KEGG: mmr:Mmar10_1001 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1674614..1675309 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053825 YP_001156385.1 CDS Pnuc_1607 NC_009379.1 1675332 1675493 R KEGG: vpa:VPA0206 hypothetical protein; hypothetical protein complement(1675332..1675493) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053871 YP_001156386.1 CDS Pnuc_1608 NC_009379.1 1675502 1677037 R PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: mpt:Mpe_A2055 alpha-deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein complement(1675502..1677037) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053183 YP_001156387.1 CDS Pnuc_1609 NC_009379.1 1677034 1677303 R KEGG: ilo:IL2050 hypothetical protein; hypothetical protein complement(1677034..1677303) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052386 YP_001156388.1 CDS Pnuc_1610 NC_009379.1 1677399 1677746 D KEGG: syf:Synpcc7942_0436 hypothetical protein; hypothetical protein 1677399..1677746 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053700 YP_001156389.1 CDS Pnuc_1611 NC_009379.1 1677845 1678660 R catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA; methylmalonyl-CoA decarboxylase complement(1677845..1678660) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053545 YP_001156390.1 CDS Pnuc_1612 NC_009379.1 1678657 1679817 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sil:SPO2040 CaiB/BaiF family protein; L-carnitine dehydratase/bile acid-inducible protein F complement(1678657..1679817) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053418 YP_001156391.1 CDS Pnuc_1613 NC_009379.1 1679947 1681212 R KEGG: gbe:GbCGDNIH1_1042 hypothetical membrane spanning protein; hypothetical protein complement(1679947..1681212) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053583 YP_001156392.1 CDS Pnuc_1614 NC_009379.1 1681366 1682352 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: rpb:RPB_4671 cytochrome d ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase, subunit II complement(1681366..1682352) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052763 YP_001156393.1 CDS Pnuc_1615 NC_009379.1 1682342 1683796 R PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: rpc:RPC_0092 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase, subunit I complement(1682342..1683796) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052768 YP_001156394.1 CDS Pnuc_1616 NC_009379.1 1683828 1685312 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(1683828..1685312) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052488 YP_001156395.1 CDS Pnuc_1617 NC_009379.1 1685346 1685726 R KEGG: gbe:GbCGDNIH1_1043 hypothetical protein; hypothetical protein complement(1685346..1685726) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052532 YP_001156396.1 CDS fumC NC_009379.1 1685766 1687223 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1685766..1687223) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052375 YP_001156397.1 CDS Pnuc_1619 NC_009379.1 1687471 1688163 R hypothetical protein complement(1687471..1688163) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052370 YP_001156398.1 CDS Pnuc_1620 NC_009379.1 1688163 1688405 R hypothetical protein complement(1688163..1688405) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053693 YP_001156399.1 CDS Pnuc_1621 NC_009379.1 1688548 1689558 R PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pen:PSEEN2685 cation transporter, CorA family; Mg2+ transporter protein, CorA family protein complement(1688548..1689558) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052189 YP_001156400.1 CDS Pnuc_1622 NC_009379.1 1689617 1690480 D KEGG: cte:CT0471 hypothetical protein; hypothetical protein 1689617..1690480 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052475 YP_001156401.1 CDS Pnuc_1623 NC_009379.1 1691038 1691517 R KEGG: mmr:Mmar10_1749 ion transport 2 domain protein; hypothetical protein complement(1691038..1691517) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052610 YP_001156402.1 CDS Pnuc_1624 NC_009379.1 1691782 1693650 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: atc:AGR_pAT_799 hypothetical protein; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(1691782..1693650) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053811 YP_001156403.1 CDS Pnuc_1625 NC_009379.1 1693860 1694288 R KEGG: bxe:Bxe_A4172 hypothetical protein; hypothetical protein complement(1693860..1694288) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052614 YP_001156404.1 CDS Pnuc_1626 NC_009379.1 1694400 1694933 R PFAM: superoxide dismutase, copper/zinc binding; KEGG: reu:Reut_B4338 copper/zinc superoxide dismutase; superoxide dismutase, copper/zinc binding complement(1694400..1694933) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053532 YP_001156405.1 CDS Pnuc_1627 NC_009379.1 1695079 1695660 D PFAM: Phosphoglycerate mutase; KEGG: maq:Maqu_2185 phosphoglycerate mutase; phosphohistidine phosphatase, SixA 1695079..1695660 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053541 YP_001156406.1 CDS Pnuc_1628 NC_009379.1 1695811 1696410 R KEGG: reu:Reut_A2150 hypothetical protein; hypothetical protein complement(1695811..1696410) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053153 YP_001156407.1 CDS Pnuc_1629 NC_009379.1 1696586 1697476 R KEGG: bpa:BPP2035 hypothetical protein; hypothetical protein complement(1696586..1697476) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052550 YP_001156408.1 CDS Pnuc_1630 NC_009379.1 1697494 1698072 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bch:Bcen2424_2743 intracellular protease, PfpI family; PfpI family intracellular peptidase complement(1697494..1698072) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052545 YP_001156409.1 CDS Pnuc_1631 NC_009379.1 1698102 1698878 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rso:RSc0020 hypothetical hydroxypyruvate isomerase; hydroxypyruvate isomerase complement(1698102..1698878) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052540 YP_001156410.1 CDS Pnuc_1632 NC_009379.1 1698893 1699555 R PFAM: class II aldolase/adducin family protein; KEGG: csa:Csal_3180 class II aldolase/adducin-like protein; aldolase complement(1698893..1699555) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053142 YP_001156411.1 CDS Pnuc_1633 NC_009379.1 1699552 1700829 R PFAM: type III effector Hrp-dependent outers; KEGG: reu:Reut_A1426 type III effector Hrp-dependent outers; Hrp-dependent type III effector protein complement(1699552..1700829) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053191 YP_001156412.1 CDS Pnuc_1634 NC_009379.1 1700857 1701756 R PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0446 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase complement(1700857..1701756) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053319 YP_001156413.1 CDS Pnuc_1635 NC_009379.1 1701823 1703124 R PFAM: major facilitator superfamily MFS_1; KEGG: bpm:BURPS1710b_A0441 major facilitator family transporter; major facilitator transporter complement(1701823..1703124) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052810 YP_001156414.1 CDS Pnuc_1636 NC_009379.1 1703317 1704117 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rme:Rmet_1834 GntR-like protein; GntR family transcriptional regulator 1703317..1704117 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053250 YP_001156415.1 CDS Pnuc_1637 NC_009379.1 1704114 1705094 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; KEGG: bxe:Bxe_B2168 hypothetical protein; NAD-dependent epimerase/dehydratase complement(1704114..1705094) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052605 YP_001156416.1 CDS Pnuc_1638 NC_009379.1 1705234 1706130 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: reu:Reut_A2347 protein of unknown function DUF6, transmembrane; hypothetical protein 1705234..1706130 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053550 YP_001156417.1 CDS Pnuc_1640 NC_009379.1 1706378 1707181 R PFAM: extracellular solute-binding protein, family 1; KEGG: aav:Aave_3268 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1706378..1707181) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051989 YP_001156418.1 CDS Pnuc_1641 NC_009379.1 1707239 1707910 R KEGG: mlo:mll1538 hypothetical protein; hypothetical protein complement(1707239..1707910) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053119 YP_001156419.1 CDS Pnuc_1642 NC_009379.1 1708032 1708688 D PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_0115 DsbA oxidoreductase; DSBA oxidoreductase 1708032..1708688 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052672 YP_001156420.1 CDS Pnuc_1643 NC_009379.1 1708703 1709851 D PFAM: iron-containing alcohol dehydrogenase; KEGG: pae:PA5186 probable iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1708703..1709851 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053324 YP_001156421.1 CDS Pnuc_1644 NC_009379.1 1709848 1710294 D PFAM: thioesterase superfamily protein; KEGG: rme:Rmet_1202 thioesterase superfamily; thioesterase superfamily protein 1709848..1710294 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053133 YP_001156422.1 CDS Pnuc_1645 NC_009379.1 1710348 1711166 R KEGG: rpb:RPB_1658 hypothetical protein; hypothetical protein complement(1710348..1711166) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052536 YP_001156423.1 CDS Pnuc_1646 NC_009379.1 1711292 1711894 R PFAM: nitroreductase; KEGG: ter:Tery_2657 nitroreductase; nitroreductase complement(1711292..1711894) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053695 YP_001156424.1 CDS Pnuc_1647 NC_009379.1 1712017 1713417 R KEGG: eba:ebA4628 excinuclease Cho, similar to DNA polymerase III epsilon subunit family; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC, C subunit domain protein; Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(1712017..1713417) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053689 YP_001156425.1 CDS Pnuc_1648 NC_009379.1 1713437 1714024 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tcx:Tcr_0617 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(1713437..1714024) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053820 YP_001156426.1 CDS Pnuc_1649 NC_009379.1 1714060 1714605 D KEGG: bch:Bcen2424_1294 hypothetical protein; hypothetical protein 1714060..1714605 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053808 YP_001156427.1 CDS Pnuc_1650 NC_009379.1 1714895 1715539 D PFAM: peptidase S16, lon domain protein; KEGG: pol:Bpro_3619 peptidase S16, lon-like; peptidase S16, lon domain-containing protein 1714895..1715539 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053828 YP_001156428.1 CDS Pnuc_1651 NC_009379.1 1715544 1716404 D KEGG: bxe:Bxe_A0614 hypothetical protein; hypothetical protein 1715544..1716404 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053942 YP_001156429.1 CDS Pnuc_1652 NC_009379.1 1716422 1716799 D hypothetical protein 1716422..1716799 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052955 YP_001156430.1 CDS Pnuc_1653 NC_009379.1 1716996 1717400 R PFAM: membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG); KEGG: rpe:RPE_0518 membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG); eicosanoid and glutathione metabolism membrane protein complement(1716996..1717400) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053714 YP_001156431.1 CDS Pnuc_1654 NC_009379.1 1717484 1718113 D PFAM: 2OG-Fe(II) oxygenase; KEGG: net:Neut_1349 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 1717484..1718113 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053076 YP_001156432.1 CDS Pnuc_1655 NC_009379.1 1718106 1719107 D PFAM: FAD dependent oxidoreductase; KEGG: xcb:XC_2960 hypothetical protein; FAD dependent oxidoreductase 1718106..1719107 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053182 YP_001156433.1 CDS Pnuc_1656 NC_009379.1 1719126 1719530 D hypothetical protein 1719126..1719530 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051957 YP_001156434.1 CDS Pnuc_1657 NC_009379.1 1719827 1720768 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_1452 ABC transporter related; ABC transporter 1719827..1720768 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051902 YP_001156435.1 CDS Pnuc_1658 NC_009379.1 1720758 1721525 D PFAM: ABC-2 type transporter; KEGG: mpt:Mpe_A0977 ABC transporter permease; ABC-2 type transporter 1720758..1721525 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053340 YP_001156436.1 CDS Pnuc_1659 NC_009379.1 1721589 1721870 R PFAM: protein of unknown function DUF427; KEGG: ana:asl0060 hypothetical protein; hypothetical protein complement(1721589..1721870) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052175 YP_001156437.1 CDS Pnuc_1660 NC_009379.1 1721966 1722913 D KEGG: pol:Bpro_2909 uncharacterized conserved protein; hypothetical protein 1721966..1722913 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053422 YP_001156438.1 CDS Pnuc_1661 NC_009379.1 1722903 1724141 D KEGG: pna:Pnap_2927 protein of unknown function DUF323; hypothetical protein 1722903..1724141 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053445 YP_001156439.1 CDS Pnuc_1662 NC_009379.1 1724131 1725267 D PFAM: aminotransferase, class I and II; KEGG: sat:SYN_01966 aminotransferase; class I and II aminotransferase 1724131..1725267 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053455 YP_001156440.1 CDS Pnuc_1663 NC_009379.1 1725400 1726677 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_1646 general substrate transporter; general substrate transporter complement(1725400..1726677) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053457 YP_001156441.1 CDS Pnuc_1664 NC_009379.1 1727007 1727534 D PFAM: GCN5-related N-acetyltransferase; KEGG: ecs:ECs2290 spermidine N1-acetyltransferase; N-acetyltransferase GCN5 1727007..1727534 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053463 YP_001156442.1 CDS Pnuc_1665 NC_009379.1 1727673 1728953 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_B5495 citrate-proton symport; major facilitator superfamily metabolite/H(+) symporter complement(1727673..1728953) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052460 YP_001156443.1 CDS Pnuc_1666 NC_009379.1 1729124 1729816 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_1079 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator complement(1729124..1729816) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053031 YP_001156444.1 CDS Pnuc_1667 NC_009379.1 1729836 1732529 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; KEGG: dar:Daro_1080 ATP-binding region, ATPase-like:histidine kinase A, N-terminal:osmosensitive K+ channel His kinase sensor; osmosensitive K+ channel signal transduction histidine kinase complement(1729836..1732529) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053798 YP_001156445.1 CDS Pnuc_1668 NC_009379.1 1732535 1733104 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(1732535..1733104) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052558 YP_001156446.1 CDS Pnuc_1669 NC_009379.1 1733135 1735210 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(1733135..1735210) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052408 YP_001156447.1 CDS Pnuc_1670 NC_009379.1 1735229 1737019 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(1735229..1737019) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051960 YP_001156448.1 CDS Pnuc_1671 NC_009379.1 1737953 1738333 R KEGG: hne:HNE_0121 hypothetical protein; hypothetical protein complement(1737953..1738333) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052383 YP_001156449.1 CDS Pnuc_1672 NC_009379.1 1738345 1738671 R PFAM: Heavy metal transport/detoxification protein; KEGG: hne:HNE_0122 hypothetical protein; heavy metal transport/detoxification protein complement(1738345..1738671) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052403 YP_001156450.1 CDS Pnuc_1673 NC_009379.1 1738694 1739332 R KEGG: hne:HNE_0123 hypothetical protein; hypothetical protein complement(1738694..1739332) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052448 YP_001156451.1 CDS Pnuc_1674 NC_009379.1 1739329 1739610 R KEGG: pna:Pnap_4550 hypothetical protein; hypothetical protein complement(1739329..1739610) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052269 YP_001156452.1 CDS Pnuc_1675 NC_009379.1 1739682 1740032 R hypothetical protein complement(1739682..1740032) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052978 YP_001156453.1 CDS Pnuc_1676 NC_009379.1 1740201 1740713 R KEGG: tbd:Tbd_0610 conserved secreted protein with internal repeats; hypothetical protein complement(1740201..1740713) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053472 YP_001156454.1 CDS Pnuc_1677 NC_009379.1 1740755 1742935 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ajs:Ajs_1242 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(1740755..1742935) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053898 YP_001156455.1 CDS Pnuc_1678 NC_009379.1 1743034 1743432 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: mpt:Mpe_A1657 transcriptional regulator; MerR family transcriptional regulator 1743034..1743432 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052342 YP_001156456.1 CDS Pnuc_1679 NC_009379.1 1743589 1744818 R KEGG: rme:Rmet_5677 hypothetical protein; hypothetical protein complement(1743589..1744818) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052310 YP_001156457.1 CDS Pnuc_1680 NC_009379.1 1744815 1747943 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: reu:Reut_B5655 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(1744815..1747943) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053382 YP_001156458.1 CDS Pnuc_1681 NC_009379.1 1747943 1749049 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: reu:Reut_B5654 secretion protein HlyD; RND family efflux transporter MFP subunit complement(1747943..1749049) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053367 YP_001156459.1 CDS Pnuc_1682 NC_009379.1 1749113 1749520 R hypothetical protein complement(1749113..1749520) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053940 YP_001156460.1 CDS Pnuc_1683 NC_009379.1 1749798 1750202 R hypothetical protein complement(1749798..1750202) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053742 YP_001156461.1 CDS Pnuc_1684 NC_009379.1 1750288 1750614 R hypothetical protein complement(1750288..1750614) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052938 YP_001156462.1 CDS Pnuc_1685 NC_009379.1 1750636 1751361 R KEGG: tma:TM0686 DNA polymerase III, gamma and tau subunit; hypothetical protein complement(1750636..1751361) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053915 YP_001156463.1 CDS Pnuc_1686 NC_009379.1 1751425 1752444 R hypothetical protein complement(1751425..1752444) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052436 YP_001156464.1 CDS Pnuc_1687 NC_009379.1 1752469 1752843 R hypothetical protein complement(1752469..1752843) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052385 YP_001156465.1 CDS Pnuc_1688 NC_009379.1 1753208 1754125 D hypothetical protein 1753208..1754125 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052748 YP_001156466.1 CDS Pnuc_1689 NC_009379.1 1754143 1754715 R PFAM: phage integrase family protein; KEGG: mag:amb3768 integrase; phage integrase family protein complement(1754143..1754715) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052779 YP_001156467.1 CDS Pnuc_1690 NC_009379.1 1754987 1755508 R hypothetical protein complement(1754987..1755508) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052867 YP_001156468.1 CDS Pnuc_1691 NC_009379.1 1755887 1756330 D KEGG: mag:amb2118 hypothetical protein; hypothetical protein 1755887..1756330 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053010 YP_001156469.1 CDS Pnuc_1692 NC_009379.1 1756539 1756901 D hypothetical protein 1756539..1756901 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053111 YP_001156470.1 CDS Pnuc_1693 NC_009379.1 1756948 1757412 D hypothetical protein 1756948..1757412 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053266 YP_001156471.1 CDS Pnuc_1694 NC_009379.1 1757500 1758903 R PFAM: phage integrase family protein; KEGG: she:Shewmr4_3198 phage integrase family protein; phage integrase family protein complement(1757500..1758903) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053400 YP_001156472.1 CDS Pnuc_1695 NC_009379.1 1758958 1759476 R hypothetical protein complement(1758958..1759476) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052896 YP_001156473.1 CDS Pnuc_1696 NC_009379.1 1759490 1761415 R KEGG: tko:TK0773 predicted ATP-dependent endonuclease, OLD family; hypothetical protein complement(1759490..1761415) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053953 YP_001156474.1 CDS Pnuc_1697 NC_009379.1 1761551 1762261 R KEGG: bps:BPSL3269 hypothetical protein; hypothetical protein complement(1761551..1762261) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053988 YP_001156475.1 CDS Pnuc_1698 NC_009379.1 1762904 1764940 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: reh:H16_A2725 DNA-directed RNA polymerase sigma subunit (RpoD); RNA polymerase sigma-70 subunit RpoD complement(1762904..1764940) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052901 YP_001156476.1 CDS Pnuc_1699 NC_009379.1 1765674 1767611 R KEGG: rme:Rmet_2607 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase complement(1765674..1767611) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053237 YP_001156477.1 CDS Pnuc_1700 NC_009379.1 1767639 1768085 R PFAM: GatB/Yqey domain protein; KEGG: bur:Bcep18194_B2206 conserved hypothetical protein, GatB/YqeY family; GatB/Yqey domain-containing protein complement(1767639..1768085) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053604 YP_001156478.1 CDS rpsU NC_009379.1 1768202 1768414 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1768202..1768414) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053829 YP_001156479.1 CDS Pnuc_1702 NC_009379.1 1768493 1769566 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 1768493..1769566 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052908 YP_001156480.1 CDS Pnuc_1703 NC_009379.1 1769602 1770429 R PFAM: protein of unknown function DUF198; KEGG: reu:Reut_A0883 protein of unknown function DUF198; hypothetical protein complement(1769602..1770429) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052022 YP_001156481.1 CDS Pnuc_1704 NC_009379.1 1770455 1772356 R TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: rme:Rmet_2615 deoxyxylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase complement(1770455..1772356) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052609 YP_001156482.1 CDS Pnuc_1705 NC_009379.1 1772373 1773287 R PFAM: Polyprenyl synthetase; KEGG: reu:Reut_A0881 polyprenyl synthetase; polyprenyl synthetase complement(1772373..1773287) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053724 YP_001156483.1 CDS Pnuc_1706 NC_009379.1 1773288 1773521 R PFAM: Exonuclease VII, small subunit; KEGG: mfa:Mfla_2131 exodeoxyribonuclease VII, small subunit; exonuclease VII, small subunit complement(1773288..1773521) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052228 YP_001156484.1 CDS Pnuc_1707 NC_009379.1 1773684 1774790 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: rme:Rmet_2618 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 1773684..1774790 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052726 YP_001156485.1 CDS Pnuc_1708 NC_009379.1 1774843 1775673 D PFAM: Rhodanese domain protein; KEGG: rme:Rmet_2620 rhodanese-like protein; 3-mercaptopyruvate sulfurtransferase 1774843..1775673 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052075 YP_001156486.1 CDS Pnuc_1709 NC_009379.1 1775670 1776443 R PFAM: zinc/iron permease; KEGG: rso:RSc2227 probable transmembrane protein; zinc/iron permease complement(1775670..1776443) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052097 YP_001156487.1 CDS Pnuc_1710 NC_009379.1 1776448 1777323 R PFAM: dienelactone hydrolase; KEGG: reu:Reut_A0875 twin-arginine translocation pathway signal; carboxymethylenebutenolidase complement(1776448..1777323) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053963 YP_001156488.1 CDS Pnuc_1711 NC_009379.1 1777339 1780170 R KEGG: reh:H16_A2741 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I complement(1777339..1780170) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052268 YP_001156489.1 CDS Pnuc_1712 NC_009379.1 1780253 1780666 D KEGG: reu:Reut_A0871 transmembrane protein; transmembrane protein 1780253..1780666 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052471 YP_001156490.1 CDS Pnuc_1713 NC_009379.1 1780706 1781683 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 1780706..1781683 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052602 YP_001156491.1 CDS Pnuc_1714 NC_009379.1 1781680 1782456 D KEGG: reu:Reut_A0869 probable transmembrane protein; transmembrane protein 1781680..1782456 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051945 YP_001156492.1 CDS Pnuc_1715 NC_009379.1 1782453 1784816 R PFAM: UvrD/REP helicase; KEGG: bxe:Bxe_A1337 DNA helicase II protein; UvrD/REP helicase complement(1782453..1784816) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051943 YP_001156493.1 CDS Pnuc_1716 NC_009379.1 1784841 1787732 D TIGRFAM: valyl-tRNA synthetase; KEGG: bte:BTH_I2633 valyl-tRNA synthetase; valyl-tRNA synthetase 1784841..1787732 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051936 YP_001156494.1 CDS Pnuc_1717 NC_009379.1 1787764 1788654 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bch:Bcen2424_1440 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 1787764..1788654 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051988 YP_001156495.1 CDS Pnuc_1718 NC_009379.1 1788672 1788917 R PFAM: SirA family protein; KEGG: rme:Rmet_0811 SirA-like protein; SirA family protein complement(1788672..1788917) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051930 YP_001156496.1 CDS alaS NC_009379.1 1788914 1791538 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1788914..1791538) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052003 YP_001156497.1 CDS Pnuc_1720 NC_009379.1 1791662 1792120 D PFAM: protein of unknown function DUF1468; KEGG: bbr:BB4221 hypothetical protein; hypothetical protein 1791662..1792120 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051990 YP_001156498.1 CDS Pnuc_1721 NC_009379.1 1792141 1793643 D PFAM: protein of unknown function DUF112, transmembrane; KEGG: rme:Rmet_3964 protein of unknown function DUF112, transmembrane; hypothetical protein 1792141..1793643 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051910 YP_001156499.1 CDS Pnuc_1722 NC_009379.1 1793728 1795500 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1793728..1795500 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052005 YP_001156500.1 CDS Pnuc_1723 NC_009379.1 1795481 1796377 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; Male sterility C-terminal domain; KEGG: mpt:Mpe_A1128 oxidoreductase; NAD-dependent epimerase/dehydratase complement(1795481..1796377) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051899 YP_001156501.1 CDS Pnuc_1724 NC_009379.1 1796399 1797445 D catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 1796399..1797445 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052040 YP_001156502.1 CDS argD NC_009379.1 1797507 1798700 D DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase 1797507..1798700 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052004 YP_001156503.1 CDS Pnuc_1726 NC_009379.1 1798723 1799436 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_2863 ABC transporter-related protein; ABC transporter complement(1798723..1799436) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052110 YP_001156504.1 CDS Pnuc_1727 NC_009379.1 1799436 1800209 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A3027 ABC-type transporter, ATPase component: HAAT family; ABC transporter complement(1799436..1800209) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052116 YP_001156505.1 CDS Pnuc_1728 NC_009379.1 1800206 1801297 R PFAM: inner-membrane translocator; KEGG: bur:Bcep18194_A5828 ABC branched-chain amino acid family transporter, inner membrane subunit; inner-membrane translocator complement(1800206..1801297) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051942 YP_001156506.1 CDS Pnuc_1729 NC_009379.1 1801290 1802225 R PFAM: inner-membrane translocator; KEGG: rme:Rmet_2866 inner-membrane translocator; inner-membrane translocator complement(1801290..1802225) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052016 YP_001156507.1 CDS Pnuc_1730 NC_009379.1 1802293 1803474 R PFAM: Extracellular ligand-binding receptor; KEGG: rme:Rmet_2867 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1802293..1803474) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051966 YP_001156508.1 CDS Pnuc_1731 NC_009379.1 1803504 1804439 R KEGG: rme:Rmet_2868 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase complement(1803504..1804439) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051948 YP_001156509.1 CDS Pnuc_1732 NC_009379.1 1804449 1804895 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: bxe:Bxe_A0819 FkpB-type peptidyl-prolyl cis-transisomerase; peptidylprolyl isomerase, FKBP-type complement(1804449..1804895) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051937 YP_001156510.1 CDS Pnuc_1733 NC_009379.1 1804899 1805618 D PFAM: DNA repair protein RadC; KEGG: eba:ebA840 DNA repair protein, RadC; DNA repair protein RadC 1804899..1805618 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052061 YP_001156511.1 CDS rpmB NC_009379.1 1805766 1805999 D required for 70S ribosome assembly; 50S ribosomal protein L28 1805766..1805999 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052307 YP_001156512.1 CDS rpmG NC_009379.1 1806011 1806178 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1806011..1806178 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052080 YP_001156513.1 CDS Pnuc_1736 NC_009379.1 1806292 1807491 R PFAM: fatty acid desaturase; KEGG: rso:RSc2450 stearoyl-CoA desaturase oxidoreductase; fatty acid desaturase complement(1806292..1807491) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053358 YP_001156514.1 CDS Pnuc_1737 NC_009379.1 1807521 1808918 R PFAM: Fmu (Sun) domain protein; KEGG: reh:H16_A3041 tRNA and rRNA cytosine-C5-methylase; Fmu (Sun) domain-containing protein complement(1807521..1808918) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052666 YP_001156515.1 CDS Pnuc_1738 NC_009379.1 1809077 1809706 R TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: bml:BMA10299_A1031 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase complement(1809077..1809706) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053097 YP_001156516.1 CDS Pnuc_1739 NC_009379.1 1809746 1810696 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: bpm:BURPS1710b_1124 riboflavin kinase/FAD synthetase; riboflavin biosynthesis protein RibF 1809746..1810696 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053996 YP_001156517.1 CDS ileS NC_009379.1 1810689 1813550 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1810689..1813550 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053625 YP_001156518.1 CDS lspA NC_009379.1 1813567 1814055 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1813567..1814055 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052340 YP_001156519.1 CDS Pnuc_1742 NC_009379.1 1814065 1815276 D TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: rme:Rmet_2887 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1814065..1815276 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052968 YP_001156520.1 CDS dut NC_009379.1 1815319 1815768 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1815319..1815768 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053381 YP_001156521.1 CDS Pnuc_1744 NC_009379.1 1815771 1816331 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: lpp:lpp0188 hypothetical protein; CMP/dCMP deaminase, zinc-binding 1815771..1816331 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053984 YP_001156522.1 CDS Pnuc_1745 NC_009379.1 1816354 1817592 R PFAM: sodium:dicarboxylate symporter; KEGG: aha:AHA_2605 proton/sodium-glutamate symport protein; sodium:dicarboxylate symporter complement(1816354..1817592) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052809 YP_001156523.1 CDS Pnuc_1746 NC_009379.1 1817605 1819014 R PFAM: fumarate lyase; KEGG: azo:azo0437 probable aspartate ammonia-lyase; fumarate lyase complement(1817605..1819014) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053258 YP_001156524.1 CDS Pnuc_1747 NC_009379.1 1819323 1819556 R hypothetical protein complement(1819323..1819556) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052863 YP_001156525.1 CDS Pnuc_1748 NC_009379.1 1819584 1821890 R KEGG: rme:Rmet_2892 ATPase AAA-2; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(1819584..1821890) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052072 YP_001156526.1 CDS Pnuc_1749 NC_009379.1 1821887 1822243 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: bxe:Bxe_A0800 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS complement(1821887..1822243) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052045 YP_001156527.1 CDS Pnuc_1750 NC_009379.1 1822519 1822722 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rme:Rmet_2894 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 1822519..1822722 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051994 YP_001156528.1 CDS Pnuc_1751 NC_009379.1 1822806 1823258 D PFAM: protein of unknown function DUF192; KEGG: rme:Rmet_2898 protein of unknown function DUF192; hypothetical protein 1822806..1823258 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051912 YP_001156529.1 CDS Pnuc_1752 NC_009379.1 1823338 1823643 R KEGG: dar:Daro_3029 protein of unknown function DUF1255; hypothetical protein complement(1823338..1823643) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052106 YP_001156530.1 CDS Pnuc_1753 NC_009379.1 1823674 1824906 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(1823674..1824906) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051944 YP_001156531.1 CDS Pnuc_1754 NC_009379.1 1824945 1825925 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1824945..1825925) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051907 YP_001156532.1 CDS Pnuc_1755 NC_009379.1 1826044 1826346 D KEGG: reh:H16_A3064 hypothetical protein; hypothetical protein 1826044..1826346 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051940 YP_001156533.1 CDS rpsT NC_009379.1 1826434 1826700 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1826434..1826700) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051996 YP_001156534.1 CDS Pnuc_1757 NC_009379.1 1826852 1828405 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: reh:H16_A3066 hypothetical membrane protein in MviN family; integral membrane protein MviN 1826852..1828405 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052023 YP_001156535.1 CDS Pnuc_1758 NC_009379.1 1828411 1829253 D KEGG: rso:RSc2558 hypothetical protein; hypothetical protein 1828411..1829253 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051952 YP_001156536.1 CDS Pnuc_1759 NC_009379.1 1829292 1829933 R KEGG: rme:Rmet_2907 DedA; hypothetical protein complement(1829292..1829933) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052083 YP_001156537.1 CDS Pnuc_1760 NC_009379.1 1829989 1830990 D KEGG: reu:Reut_A2770 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1829989..1830990 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052123 YP_001156538.1 CDS Pnuc_1761 NC_009379.1 1831001 1832053 R KEGG: reu:Reut_A2773 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase complement(1831001..1832053) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051906 YP_001156539.1 CDS Pnuc_1762 NC_009379.1 1832126 1833115 D PFAM: protein of unknown function UPF0118; KEGG: rso:RSc2624 probable permease transmembrane transport protein; hypothetical protein 1832126..1833115 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052013 YP_001156540.1 CDS Pnuc_1763 NC_009379.1 1833126 1833881 D PFAM: Chromosomal replication initiator, DnaA; KEGG: reu:Reut_A2775 hypothetical protein; chromosomal replication initiator DnaA 1833126..1833881 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051916 YP_001156541.1 CDS Pnuc_1764 NC_009379.1 1833901 1834581 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: rso:RSc2626 hydrolase; HAD family hydrolase 1833901..1834581 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051921 YP_001156542.1 CDS Pnuc_1765 NC_009379.1 1834578 1835981 D TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: rso:RSc2627 probable polynucleotide adenylyltransferase; poly(A) polymerase 1834578..1835981 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051926 YP_001156543.1 CDS Pnuc_1766 NC_009379.1 1836034 1836561 D KEGG: rme:Rmet_2915 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1836034..1836561 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051986 YP_001156544.1 CDS Pnuc_1767 NC_009379.1 1836579 1837397 D KEGG: rme:Rmet_2917 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1836579..1837397 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051976 YP_001156545.1 CDS Pnuc_1768 NC_009379.1 1837405 1838547 R TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: rme:Rmet_2921 chaperone DnaJ; molecular chaperone DnaJ complement(1837405..1838547) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051950 YP_001156546.1 CDS dnaK NC_009379.1 1838648 1840582 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1838648..1840582) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051947 YP_001156547.1 CDS Pnuc_1770 NC_009379.1 1840730 1841284 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1840730..1841284) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052629 YP_001156548.1 CDS hemH NC_009379.1 1841348 1842442 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1841348..1842442) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052437 YP_001156549.1 CDS hrcA NC_009379.1 1842493 1843503 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(1842493..1843503) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052243 YP_001156550.1 CDS Pnuc_1773 NC_009379.1 1843541 1844446 D PFAM: ATP-NAD/AcoX kinase; KEGG: reu:Reut_A1035 inorganic polyphosphate/ATP-NAD kinase; NAD(+) kinase 1843541..1844446 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052124 YP_001156551.1 CDS Pnuc_1774 NC_009379.1 1844473 1846143 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rso:RSc2651 probable DNA repair protein; DNA repair protein RecN 1844473..1846143 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053612 YP_001156552.1 CDS Pnuc_1775 NC_009379.1 1846140 1848953 R PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: rso:RSc2656 probable glutamate-ammonia-ligase adenylyltransferase (glutamine-synthetase adenylyltransferase) protein; (glutamate--ammonia-ligase) adenylyltransferase complement(1846140..1848953) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053630 YP_001156553.1 CDS Pnuc_1776 NC_009379.1 1849030 1853184 D KEGG: rso:RSc2657 probable transmembrane protein; hypothetical protein 1849030..1853184 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052059 YP_001156554.1 CDS Pnuc_1777 NC_009379.1 1853184 1854017 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bpe:BP2910 hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1853184..1854017 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051928 YP_001156555.1 CDS Pnuc_1778 NC_009379.1 1854043 1855533 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rme:Rmet_0991 peptidase U62, modulator of DNA gyrase; C69 family peptidase 1854043..1855533 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052073 YP_001156556.1 CDS Pnuc_1779 NC_009379.1 1855553 1856677 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1855553..1856677 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053488 YP_001156557.1 CDS Pnuc_1780 NC_009379.1 1856712 1857281 R TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: rso:RSc2663 hypothetical protein; ATP--cobalamin adenosyltransferase complement(1856712..1857281) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052338 YP_001156558.1 CDS Pnuc_1781 NC_009379.1 1857309 1858814 D PFAM: FAD linked oxidase domain protein; KEGG: reh:H16_A3094 glycolate oxidase subunit GlcD; D-lactate dehydrogenase 1857309..1858814 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052598 YP_001156559.1 CDS Pnuc_1782 NC_009379.1 1858814 1859959 D PFAM: FAD linked oxidase domain protein; KEGG: bxe:Bxe_A3979 glycolate oxidase, subunit GlcE; FAD linked oxidase domain-containing protein 1858814..1859959 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051949 YP_001156560.1 CDS glcF NC_009379.1 1859968 1861248 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: reu:Reut_A2793 4Fe-4S ferredoxin, iron-sulfur binding:protein of unknown function DUF224, cysteine-rich region; glycolate oxidase iron-sulfur subunit 1859968..1861248 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052125 YP_001156561.1 CDS Pnuc_1784 NC_009379.1 1861245 1861970 D PFAM: alanine racemase domain protein; KEGG: bte:BTH_I1288 conserved hypothetical protein TIGR00044; alanine racemase 1861245..1861970 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051998 YP_001156562.1 CDS Pnuc_1785 NC_009379.1 1861967 1862836 D KEGG: azo:azo3466 probable 1-pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase 1861967..1862836 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051965 YP_001156563.1 CDS Pnuc_1786 NC_009379.1 1862860 1863723 R TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: bte:BTH_I1286 4-hydroxybenzoate polyprenyl transferase; 4-hydroxybenzoate polyprenyltransferase complement(1862860..1863723) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052881 YP_001156564.1 CDS Pnuc_1787 NC_009379.1 1863733 1865748 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(1863733..1865748) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053896 YP_001156565.1 CDS queA NC_009379.1 1865833 1866879 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1865833..1866879 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052060 YP_001156566.1 CDS Pnuc_1789 NC_009379.1 1866852 1868033 D KEGG: bch:Bcen2424_0722 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1866852..1868033 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053611 YP_001156567.1 CDS Pnuc_1790 NC_009379.1 1868168 1868494 D TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: rme:Rmet_2945 preprotein translocase, YajC subunit; preprotein translocase subunit YajC 1868168..1868494 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052294 YP_001156568.1 CDS Pnuc_1791 NC_009379.1 1868520 1870379 D TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: rso:RSc2715 probable-export membrane protein secd transmembrane; protein-export membrane protein SecD 1868520..1870379 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052067 YP_001156569.1 CDS secF NC_009379.1 1870383 1871357 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1870383..1871357 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053169 YP_001156570.1 CDS Pnuc_1793 NC_009379.1 1871354 1872703 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: reu:Reut_A0747 three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; 3-deoxy-D-manno-octulosonic-acid transferase complement(1871354..1872703) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051941 YP_001156571.1 CDS Pnuc_1794 NC_009379.1 1872712 1874091 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1872712..1874091) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052146 YP_001156572.1 CDS Pnuc_1795 NC_009379.1 1874136 1874801 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: aav:Aave_4668 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 1874136..1874801 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052803 YP_001156573.1 CDS mnmA NC_009379.1 1874877 1875989 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1874877..1875989) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053080 YP_001156574.1 CDS Pnuc_1797 NC_009379.1 1876167 1877297 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: reh:H16_A3128 NAD(P) transhydrogenase subunit alpha 1; NAD(P) transhydrogenase subunit alpha 1876167..1877297 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053773 YP_001156575.1 CDS Pnuc_1798 NC_009379.1 1877322 1877660 D KEGG: cvi:CV0100 probable transmembrane NAD(P) transhydrogenase transmembrane protein; transmembrane NAD(P) transhydrogenase transmembrane protein 1877322..1877660 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052590 YP_001156576.1 CDS Pnuc_1799 NC_009379.1 1877694 1879061 D PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: cvi:CV0099 NAD(P) transhydrogenase, beta subunit; NAD(P) transhydrogenase, beta subunit 1877694..1879061 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052103 YP_001156577.1 CDS Pnuc_1800 NC_009379.1 1879207 1880046 D KEGG: bxe:Bxe_B1588 hypothetical protein; hypothetical protein 1879207..1880046 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052038 YP_001156578.1 CDS Pnuc_1801 NC_009379.1 1880064 1880903 R PFAM: glycosyl transferase, family 11; KEGG: gfo:orf553 alpha-1,2-fucosyltransferase; glycosyl transferase family protein complement(1880064..1880903) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053595 YP_001156579.1 CDS Pnuc_1802 NC_009379.1 1880993 1881826 D KEGG: bba:Bd1672 N-acetylglucosaminyltransferase; hypothetical protein 1880993..1881826 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052308 YP_001156580.1 CDS Pnuc_1803 NC_009379.1 1881840 1882643 D KEGG: bxe:Bxe_B1588 hypothetical protein; hypothetical protein 1881840..1882643 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053497 YP_001156581.1 CDS Pnuc_1804 NC_009379.1 1882707 1883402 R KEGG: mva:Mvan_3455 conserved hypothetical protein; hypothetical protein complement(1882707..1883402) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052798 YP_001156582.1 CDS groEL NC_009379.1 1883492 1885144 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(1883492..1885144) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052121 YP_001156583.1 CDS groES NC_009379.1 1885173 1885463 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1885173..1885463) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052515 YP_001156584.1 CDS Pnuc_1807 NC_009379.1 1885779 1886621 D diguanylate phosphodiesterase 1885779..1886621 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053167 YP_001156585.1 CDS Pnuc_1808 NC_009379.1 1886621 1887244 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: reh:H16_B1086 response regulator, NarL-family; two component LuxR family transcriptional regulator 1886621..1887244 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052079 YP_001156586.1 CDS Pnuc_1809 NC_009379.1 1887252 1889672 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ppu:PP_3413 sensor histidine kinase/response regulator; histidine kinase 1887252..1889672 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051898 YP_001156587.1 CDS Pnuc_1810 NC_009379.1 1889721 1891262 D TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: reu:Reut_A0564 peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 1889721..1891262 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053478 YP_001156588.1 CDS Pnuc_1811 NC_009379.1 1891208 1892296 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: reh:H16_A0572 translation factor (SUA5); Sua5/YciO/YrdC/YwlC family protein complement(1891208..1892296) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052304 YP_001156589.1 CDS Pnuc_1812 NC_009379.1 1892299 1893483 R KEGG: reh:H16_A0571 phosphoribosylaminoimidazole carboxylase ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1892299..1893483) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052956 YP_001156590.1 CDS Pnuc_1813 NC_009379.1 1893488 1893982 R KEGG: pna:Pnap_3863 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(1893488..1893982) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053768 YP_001156591.1 CDS Pnuc_1814 NC_009379.1 1894023 1894919 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1894023..1894919) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052031 YP_001156592.1 CDS Pnuc_1815 NC_009379.1 1894927 1895991 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(1894927..1895991) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053205 YP_001156593.1 CDS Pnuc_1816 NC_009379.1 1896032 1897468 R PFAM: pyruvate kinase; KEGG: rso:RSc0572 pyruvate kinase; pyruvate kinase complement(1896032..1897468) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053490 YP_001156594.1 CDS Pnuc_1817 NC_009379.1 1897471 1898682 R PFAM: phosphoglycerate kinase; KEGG: mpt:Mpe_A0289 phosphoglycerate kinase; phosphoglycerate kinase complement(1897471..1898682) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053079 YP_001156595.1 CDS Pnuc_1818 NC_009379.1 1898876 1899799 D TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV; KEGG: rme:Rmet_0493 branched-chain amino acid aminotransferase; branched-chain amino acid aminotransferase 1898876..1899799 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052139 YP_001156596.1 CDS Pnuc_1819 NC_009379.1 1899824 1900012 D KEGG: reu:Reut_A0546 hypothetical protein; hypothetical protein 1899824..1900012 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052048 YP_001156597.1 CDS Pnuc_1820 NC_009379.1 1900059 1901090 D TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: reh:H16_A0559 ADP-heptose:LPS heptosyltransferase III; lipopolysaccharide heptosyltransferase II 1900059..1901090 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052018 YP_001156598.1 CDS Pnuc_1821 NC_009379.1 1901113 1901547 D KEGG: reu:Reut_A0544 hypothetical protein; hypothetical protein 1901113..1901547 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052055 YP_001156599.1 CDS Pnuc_1822 NC_009379.1 1901557 1902177 D KEGG: rso:RSc0562 hypothetical protein; hypothetical protein 1901557..1902177 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052111 YP_001156600.1 CDS Pnuc_1823 NC_009379.1 1902179 1903867 R PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rme:Rmet_0487 peptidase M48, Ste24p; peptidase M48, Ste24p complement(1902179..1903867) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052669 YP_001156601.1 CDS Pnuc_1824 NC_009379.1 1903900 1904376 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: reu:Reut_A0540 molybdopterin cofactor biosynthesis MoaC region; molybdenum cofactor biosynthesis protein C 1903900..1904376 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052001 YP_001156602.1 CDS Pnuc_1825 NC_009379.1 1904392 1905963 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0301 TPR repeat; hypothetical protein complement(1904392..1905963) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052128 YP_001156603.1 CDS Pnuc_1826 NC_009379.1 1906109 1907083 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 1906109..1907083 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052950 YP_001156604.1 CDS Pnuc_1827 NC_009379.1 1907098 1909383 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 TPR repeat-containing protein; hypothetical protein complement(1907098..1909383) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052062 YP_001156605.1 CDS Pnuc_1828 NC_009379.1 1909463 1909975 R KEGG: maq:Maqu_2680 fimbrial protein pilin; fimbrial protein pilin complement(1909463..1909975) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051961 YP_001156606.1 CDS Pnuc_1829 NC_009379.1 1910093 1910803 R PFAM: Integral membrane protein TerC; KEGG: reh:H16_A0549 integral membrane protein; integral membrane protein TerC complement(1910093..1910803) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051934 YP_001156607.1 CDS Pnuc_1830 NC_009379.1 1910891 1911784 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(1910891..1911784) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052058 YP_001156608.1 CDS sucC NC_009379.1 1911800 1912969 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(1911800..1912969) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053334 YP_001156609.1 CDS Pnuc_1832 NC_009379.1 1913157 1913675 R PFAM: regulatory protein RecX; KEGG: bam:Bamb_2698 regulatory protein RecX; regulatory protein RecX complement(1913157..1913675) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052117 YP_001156610.1 CDS Pnuc_1833 NC_009379.1 1913680 1914771 R KEGG: rme:Rmet_0466 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein complement(1913680..1914771) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053755 YP_001156611.1 CDS Pnuc_1834 NC_009379.1 1914890 1915423 R KEGG: ppd:Ppro_0125 hypothetical protein; hypothetical protein complement(1914890..1915423) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053179 YP_001156612.1 CDS Pnuc_1835 NC_009379.1 1915705 1916781 D hypothetical protein 1915705..1916781 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052661 YP_001156613.1 CDS Pnuc_1836 NC_009379.1 1916778 1917407 D hypothetical protein 1916778..1917407 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053231 YP_001156614.1 CDS Pnuc_1837 NC_009379.1 1917410 1917745 D hypothetical protein 1917410..1917745 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052251 YP_001156615.1 CDS Pnuc_1838 NC_009379.1 1917738 1918142 D hypothetical protein 1917738..1918142 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052653 YP_001156616.1 CDS Pnuc_1839 NC_009379.1 1918139 1918720 R PFAM: phage integrase family protein; KEGG: mag:amb4292 integrase; phage integrase family protein complement(1918139..1918720) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053503 YP_001156617.1 CDS Pnuc_1840 NC_009379.1 1919113 1919307 D KEGG: pcr:Pcryo_0936 hypothetical protein; hypothetical protein 1919113..1919307 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052071 YP_001156618.1 CDS Pnuc_1841 NC_009379.1 1919319 1919801 D hypothetical protein 1919319..1919801 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052052 YP_001156619.1 CDS Pnuc_1842 NC_009379.1 1919831 1920406 R hypothetical protein complement(1919831..1920406) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052085 YP_001156620.1 CDS Pnuc_1843 NC_009379.1 1920553 1921095 R hypothetical protein complement(1920553..1921095) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051981 YP_001156621.1 CDS Pnuc_1844 NC_009379.1 1921219 1921665 D KEGG: mag:amb2118 hypothetical protein; hypothetical protein 1921219..1921665 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052041 YP_001156622.1 CDS Pnuc_1845 NC_009379.1 1922198 1923610 R PFAM: phage integrase family protein; KEGG: she:Shewmr4_3198 phage integrase family protein; phage integrase family protein complement(1922198..1923610) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053172 YP_001156623.1 CDS Pnuc_1846 NC_009379.1 1923942 1924373 R hypothetical protein complement(1923942..1924373) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051915 YP_001156624.1 CDS Pnuc_1847 NC_009379.1 1924430 1924750 D KEGG: gfo:orf2569 secreted protein; secreted protein 1924430..1924750 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052951 YP_001156625.1 CDS Pnuc_1848 NC_009379.1 1924769 1925380 D PFAM: MOSC domain containing protein; KEGG: reu:Reut_A3423 MOSC; MOSC domain-containing protein 1924769..1925380 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051973 YP_001156626.1 CDS Pnuc_1849 NC_009379.1 1925434 1927104 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_4345 major facilitator superfamily MFS_1; major facilitator transporter complement(1925434..1927104) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052325 YP_001156627.1 CDS Pnuc_1850 NC_009379.1 1927385 1928014 R PFAM: protein of unknown function UPF0126; KEGG: cps:CPS_4741 hypothetical protein; hypothetical protein complement(1927385..1928014) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052042 YP_001156628.1 CDS Pnuc_1851 NC_009379.1 1928104 1928796 D TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: reh:H16_A0362 maleylacetoacetate isomerase; maleylacetoacetate isomerase 1928104..1928796 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052082 YP_001156629.1 CDS Pnuc_1852 NC_009379.1 1928818 1929342 R KEGG: pol:Bpro_3188 transferase hexapeptide repeat; hexapaptide repeat-containing transferase complement(1928818..1929342) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051900 YP_001156630.1 CDS Pnuc_1854 NC_009379.1 1929593 1929955 D KEGG: mca:MCA0470 hypothetical protein; hypothetical protein 1929593..1929955 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051933 YP_001156631.1 CDS Pnuc_1855 NC_009379.1 1930000 1930287 D KEGG: mca:MCA2026 hypothetical protein; hypothetical protein 1930000..1930287 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052020 YP_001156632.1 CDS Pnuc_1856 NC_009379.1 1930332 1930721 R PFAM: OsmC family protein; KEGG: dar:Daro_2717 OsmC-like protein; OsmC family protein complement(1930332..1930721) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051959 YP_001156633.1 CDS Pnuc_1857 NC_009379.1 1930759 1931169 R PFAM: Rhodanese domain protein; KEGG: mag:amb0217 rhodanese-related sulfurtransferase; rhodanese domain-containing protein complement(1930759..1931169) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052813 YP_001156634.1 CDS Pnuc_1858 NC_009379.1 1931228 1932490 D PFAM: protein of unknown function DUF1504; KEGG: pna:Pnap_2982 protein of unknown function DUF1504; hypothetical protein 1931228..1932490 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052649 YP_001156635.1 CDS Pnuc_1859 NC_009379.1 1932558 1933904 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1932558..1933904 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052114 YP_001156636.1 CDS Pnuc_1860 NC_009379.1 1933894 1934361 D PFAM: protein of unknown function UPF0054; KEGG: bxe:Bxe_A0628 protein of unknown function UPF0054; hypothetical protein 1933894..1934361 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053184 YP_001156637.1 CDS Pnuc_1861 NC_009379.1 1934416 1935255 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: rso:RSc0528 conserved hypothetical protein; hypothetical protein 1934416..1935255 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053081 YP_001156638.1 CDS Pnuc_1862 NC_009379.1 1935264 1936775 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rme:Rmet_0449 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 1935264..1936775 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053892 YP_001156639.1 CDS glyQ NC_009379.1 1936836 1937720 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1936836..1937720 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053783 YP_001156640.1 CDS glyS NC_009379.1 1937752 1939890 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1937752..1939890 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053782 YP_001156641.1 CDS Pnuc_1865 NC_009379.1 1939887 1940459 D TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase, central region; KEGG: reu:Reut_A0506 hypothetical protein; histidinol-phosphate phosphatase family protein 1939887..1940459 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053638 YP_001156642.1 CDS Pnuc_1866 NC_009379.1 1940467 1941201 D PFAM: phospholipid/glycerol acyltransferase; KEGG: rme:Rmet_0444 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1940467..1941201 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053384 YP_001156643.1 CDS Pnuc_1867 NC_009379.1 1941219 1941995 R TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: dar:Daro_3656 rRNA 16S rRNA dimethylase; dimethyladenosine transferase complement(1941219..1941995) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053368 YP_001156644.1 CDS Pnuc_1868 NC_009379.1 1941999 1943006 R KEGG: bam:Bamb_2761 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(1941999..1943006) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053226 YP_001156645.1 CDS Pnuc_1869 NC_009379.1 1942981 1944435 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rso:RSc0516 probable peptidyl-prolyl cis-trans isomerase (rotamase C) protein; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1942981..1944435) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053063 YP_001156646.1 CDS Pnuc_1870 NC_009379.1 1944435 1946885 R PFAM: Organic solvent tolerance protein; KEGG: reu:Reut_A0497 organic solvent tolerance protein; organic solvent tolerance protein complement(1944435..1946885) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053089 YP_001156647.1 CDS Pnuc_1871 NC_009379.1 1946988 1947989 D PFAM: aminoglycoside phosphotransferase; KEGG: rme:Rmet_0435 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1946988..1947989 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053088 YP_001156648.1 CDS Pnuc_1872 NC_009379.1 1948003 1948713 D PFAM: Nucleotidyl transferase; KEGG: nmu:Nmul_A0127 nucleotidyl transferase; nucleotidyl transferase 1948003..1948713 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052975 YP_001156649.1 CDS Pnuc_1873 NC_009379.1 1948700 1950076 D PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: rso:RSc0509 probable Xaa-Pro aminopeptidase (aminopeptidase P II) protein; peptidase M24 1948700..1950076 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052969 YP_001156650.1 CDS Pnuc_1874 NC_009379.1 1950092 1951249 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: bam:Bamb_0587 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 1950092..1951249 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052692 YP_001156651.1 CDS Pnuc_1875 NC_009379.1 1951402 1952418 D TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: bxe:Bxe_A0621 dihydrouridine synthase TIM-barrel protein nifR3; nifR3 family TIM-barrel protein 1951402..1952418 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052351 YP_001156652.1 CDS Pnuc_1876 NC_009379.1 1952469 1952708 D PFAM: helix-turn-helix, Fis-type; KEGG: pol:Bpro_1131 transcriptional regulator, fis family; Fis family transcriptional regulator 1952469..1952708 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052350 YP_001156653.1 CDS purH NC_009379.1 1952753 1954333 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1952753..1954333 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053927 YP_001156654.1 CDS ruvC NC_009379.1 1954340 1954858 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1954340..1954858 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052148 YP_001156655.1 CDS ruvA NC_009379.1 1954888 1955469 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1954888..1955469 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052149 YP_001156656.1 CDS ruvB NC_009379.1 1955487 1956557 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1955487..1956557 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052150 YP_001156657.1 CDS Pnuc_1881 NC_009379.1 1956573 1957805 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(1956573..1957805) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052151 YP_001156658.1 CDS anmK NC_009379.1 1957882 1959009 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1957882..1959009 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053093 YP_001156659.1 CDS Pnuc_1883 NC_009379.1 1959022 1959396 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rso:RSc0494 hypothetical protein; iron-sulfur cluster assembly accessory protein complement(1959022..1959396) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052102 YP_001156660.1 CDS argC NC_009379.1 1959465 1960523 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(1959465..1960523) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053948 YP_001156661.1 CDS Pnuc_1885 NC_009379.1 1960636 1961037 R PFAM: ribosomal protein S9; KEGG: rme:Rmet_0411 ribosomal protein S9; 30S ribosomal protein S9 complement(1960636..1961037) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052687 YP_001156662.1 CDS rplM NC_009379.1 1961047 1961475 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1961047..1961475) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052883 YP_001156663.1 CDS Pnuc_1887 NC_009379.1 1961885 1962307 D PFAM: OsmC family protein; KEGG: bxe:Bxe_A0605 OsmC-like protein; OsmC family protein 1961885..1962307 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053515 YP_001156664.1 CDS Pnuc_1888 NC_009379.1 1962672 1963730 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1962672..1963730) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051922 YP_001156665.1 CDS Pnuc_1889 NC_009379.1 1963732 1965084 R PFAM: MOFRL domain protein; KEGG: reu:Reut_A0463 hydroxypyruvate reductase; hydroxypyruvate reductase complement(1963732..1965084) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052971 YP_001156666.1 CDS Pnuc_1890 NC_009379.1 1965094 1966917 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A0452 ABC transporter, transmembrane region:ABC transporter related; ABC transporter complement(1965094..1966917) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054016 YP_001156667.1 CDS Pnuc_1891 NC_009379.1 1966927 1967385 R PFAM: NUDIX hydrolase; KEGG: bte:BTH_I0561 dATP pyrophosphohydrolase; NUDIX hydrolase complement(1966927..1967385) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053935 YP_001156668.1 CDS Pnuc_1892 NC_009379.1 1967417 1969216 R TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); GAD domain protein; tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: rso:RSc0466 probable aspartyl-tRNA synthetase; aspartyl-tRNA synthetase complement(1967417..1969216) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053268 YP_001156669.1 CDS Pnuc_1893 NC_009379.1 1969233 1969886 R PFAM: protein of unknown function DUF502; KEGG: rfr:Rfer_1296 protein of unknown function DUF502; hypothetical protein complement(1969233..1969886) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053640 YP_001156670.1 CDS Pnuc_1894 NC_009379.1 1969939 1971525 R TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: rso:RSc0461 probable ubiquinone biosynthesis transmembrane protein; 2-polyprenylphenol 6-hydroxylase complement(1969939..1971525) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052670 YP_001156671.1 CDS Pnuc_1895 NC_009379.1 1971529 1972149 R PFAM: protein of unknown function DUF1243; KEGG: bxe:Bxe_A4048 hypothetical protein; hypothetical protein complement(1971529..1972149) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053285 YP_001156672.1 CDS Pnuc_1896 NC_009379.1 1972203 1973114 R PFAM: import inner membrane translocase, subunit Tim44; KEGG: reh:H16_A0446 hypothetical membrane spanning protein; import inner membrane translocase, subunit Tim44 complement(1972203..1973114) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053029 YP_001156673.1 CDS Pnuc_1897 NC_009379.1 1973182 1973925 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rme:Rmet_0371 ubiquinone/menaquinone biosynthesis methyltransferases; ubiquinone/menaquinone biosynthesis methyltransferase complement(1973182..1973925) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052716 YP_001156674.1 CDS Pnuc_1898 NC_009379.1 1973925 1974311 R PFAM: protein of unknown function DUF971; KEGG: ajs:Ajs_0866 protein of unknown function DUF971; hypothetical protein complement(1973925..1974311) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052705 YP_001156675.1 CDS Pnuc_1899 NC_009379.1 1974311 1978150 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: reu:Reut_A0427 protein of unknown function DUF224, cysteine-rich region:FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal; FAD linked oxidase domain-containing protein complement(1974311..1978150) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053000 YP_001156676.1 CDS Pnuc_1900 NC_009379.1 1978285 1979805 D TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase domain protein; Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: reh:H16_A0427 threonine dehydratase; threonine dehydratase, biosynthetic 1978285..1979805 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053864 YP_001156677.1 CDS Pnuc_1901 NC_009379.1 1979817 1980734 D PFAM: 5-nucleotidase; KEGG: mpt:Mpe_A3141 5-nucleotidase; 5'-nucleotidase 1979817..1980734 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053817 YP_001156678.1 CDS queF NC_009379.1 1980752 1981579 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1980752..1981579 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053718 YP_001156679.1 CDS Pnuc_1903 NC_009379.1 1981652 1982107 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: rme:Rmet_0315 single-strand binding protein; single-strand binding protein complement(1981652..1982107) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053660 YP_001156680.1 CDS Pnuc_1904 NC_009379.1 1982189 1983373 R PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A0368 major facilitator superfamily MFS_1; major facilitator transporter complement(1982189..1983373) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053666 YP_001156681.1 CDS Pnuc_1905 NC_009379.1 1983411 1986299 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: rso:RSc0420 probable excinuclease ABC subunit A (DNA repair ATP-binding) ABC transporter protein; excinuclease ABC subunit A 1983411..1986299 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053408 YP_001156682.1 CDS Pnuc_1906 NC_009379.1 1986328 1988310 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: reh:H16_A0392 Kef-type K+ transport system, membrane and NAD-binding component; potassium efflux system protein complement(1986328..1988310) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053312 YP_001156683.1 CDS Pnuc_1907 NC_009379.1 1988322 1989314 D KEGG: bxe:Bxe_A4117 KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 1988322..1989314 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053275 YP_001156684.1 CDS Pnuc_1908 NC_009379.1 1989344 1989916 D TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: rso:RSc0412 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1989344..1989916 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052999 YP_001156685.1 CDS Pnuc_1909 NC_009379.1 1989920 1990561 D PFAM: protein of unknown function DUF1239; KEGG: rme:Rmet_0306 protein of unknown function DUF1239; hypothetical protein 1989920..1990561 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052753 YP_001156686.1 CDS Pnuc_1910 NC_009379.1 1990563 1991135 D PFAM: OstA family protein; KEGG: reu:Reut_A0357 OstA-like protein; OstA family protein 1990563..1991135 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052791 YP_001156687.1 CDS Pnuc_1911 NC_009379.1 1991132 1991899 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A0388 ABC-type transporter, ATPase component: HAAT family; ABC transporter 1991132..1991899 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052452 YP_001156688.1 CDS Pnuc_1912 NC_009379.1 1992082 1992405 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bte:BTH_I0485 ribosomal subunit interface protein; sigma 54 modulation protein/ribosomal protein S30EA 1992082..1992405 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052270 YP_001156689.1 CDS Pnuc_1913 NC_009379.1 1992439 1992900 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: rme:Rmet_0300 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 1992439..1992900 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052992 YP_001156690.1 CDS Pnuc_1914 NC_009379.1 1992897 1993883 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 1992897..1993883 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052172 YP_001156691.1 CDS Pnuc_1915 NC_009379.1 1993887 1994777 D PFAM: Uncharacterised P-loop ATPase UPF0042; KEGG: rso:RSc0403 hypothetical protein; hypothetical protein 1993887..1994777 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052390 YP_001156692.1 CDS Pnuc_1916 NC_009379.1 1994722 1995867 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: bpm:BURPS1710b_0759 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase complement(1994722..1995867) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052259 YP_001156693.1 CDS Pnuc_1917 NC_009379.1 1995852 1996688 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(1995852..1996688) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053668 YP_001156694.1 CDS Pnuc_1918 NC_009379.1 1996724 1998208 D PFAM: outer membrane lipoprotein LolB; KEGG: bam:Bamb_2859 tetratricopeptide TPR_2 repeat protein; outer membrane lipoprotein LolB 1996724..1998208 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053108 YP_001156695.1 CDS ipk NC_009379.1 1998201 1999085 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1998201..1999085 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052765 YP_001156696.1 CDS Pnuc_1920 NC_009379.1 1999222 2000187 D KEGG: rso:RSc0395 probable ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 1999222..2000187 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052595 YP_001156697.1 CDS Pnuc_1921 NC_009379.1 2000323 2000964 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2000323..2000964 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052442 YP_001156698.1 CDS Pnuc_1922 NC_009379.1 2001050 2001640 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 2001050..2001640 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052205 YP_001156699.1 CDS Pnuc_1923 NC_009379.1 2001646 2001912 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dar:Daro_3724 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin complement(2001646..2001912) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053819 YP_001156700.1 CDS coaD NC_009379.1 2001930 2002427 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(2001930..2002427) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053710 YP_001156701.1 CDS Pnuc_1925 NC_009379.1 2002464 2003054 R TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: bur:Bcep18194_A6138 hypothetical protein; methyltransferase complement(2002464..2003054) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053551 YP_001156702.1 CDS Pnuc_1926 NC_009379.1 2003074 2004411 R PFAM: peptidase M16 domain protein; KEGG: rme:Rmet_0283 peptidase M16-like protein; peptidase M16 domain-containing protein complement(2003074..2004411) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053318 YP_001156703.1 CDS Pnuc_1927 NC_009379.1 2004411 2005778 R PFAM: peptidase M16 domain protein; KEGG: rme:Rmet_0282 peptidase M16-like protein; peptidase M16 domain-containing protein complement(2004411..2005778) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053283 YP_001156704.1 CDS Pnuc_1928 NC_009379.1 2005842 2006732 D KEGG: eba:ebA1393 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 2005842..2006732 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053048 YP_001156705.1 CDS Pnuc_1929 NC_009379.1 2006825 2007754 D TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; KEGG: bch:Bcen2424_2815 RNA polymerase, sigma 32 subunit, RpoH; RNA polymerase sigma-32 subunit RpoH 2006825..2007754 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052853 YP_001156706.1 CDS Pnuc_1930 NC_009379.1 2007776 2008366 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: rme:Rmet_0271 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(2007776..2008366) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052727 YP_001156707.1 CDS Pnuc_1931 NC_009379.1 2008368 2009261 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(2008368..2009261) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052581 YP_001156708.1 CDS Pnuc_1932 NC_009379.1 2009258 2010388 R PFAM: cytochrome oxidase assembly; KEGG: reh:H16_A0351 hemeA synthase; cytochrome oxidase assembly complement(2009258..2010388) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052474 YP_001156709.1 CDS Pnuc_1933 NC_009379.1 2010388 2011044 R KEGG: reu:Reut_A0321 probable transmembrane protein; transmembrane protein complement(2010388..2011044) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052212 YP_001156710.1 CDS Pnuc_1934 NC_009379.1 2011047 2011769 R KEGG: bam:Bamb_2897 SURF1 family protein; SURF1 family protein complement(2011047..2011769) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053272 YP_001156711.1 CDS Pnuc_1935 NC_009379.1 2011856 2012068 D KEGG: bur:Bcep18194_A6171 hypothetical protein; hypothetical protein 2011856..2012068 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053861 YP_001156712.1 CDS Pnuc_1936 NC_009379.1 2012121 2012975 R PFAM: cytochrome c oxidase, subunit III; KEGG: bxe:Bxe_A4167 cytochrome c oxidase, subunit III; cytochrome c oxidase, subunit III complement(2012121..2012975) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053866 YP_001156713.1 CDS Pnuc_1937 NC_009379.1 2013005 2013202 R KEGG: rso:RSc0366 probable transmembrane protein; transmembrane protein complement(2013005..2013202) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053832 YP_001156714.1 CDS Pnuc_1938 NC_009379.1 2013211 2013792 R PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: rme:Rmet_0263 cytochrome c oxidase assembly protein CtaG/Cox11; cytochrome c oxidase assembly protein CtaG/Cox11 complement(2013211..2013792) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053813 YP_001156715.1 CDS Pnuc_1939 NC_009379.1 2013920 2015551 R PFAM: cytochrome c oxidase, subunit I; KEGG: rso:RSc0363 probable cytochrome C oxidase polypeptide I (cytochrome AA3 subunit 1) transmembrane protein; cytochrome-c oxidase complement(2013920..2015551) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053716 YP_001156716.1 CDS Pnuc_1940 NC_009379.1 2015592 2016749 R PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: reu:Reut_A0314 cytochrome c oxidase, subunit II:cytochrome c, class I:cytochrome c oxidase subunit II, transmembrane region; cytochrome c oxidase, subunit II complement(2015592..2016749) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053708 YP_001156717.1 CDS Pnuc_1941 NC_009379.1 2016930 2017685 R PFAM: Methyltransferase type 11; KEGG: reh:H16_A0340 predicted methyltransferase; methyltransferase type 11 complement(2016930..2017685) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053587 YP_001156718.1 CDS Pnuc_1942 NC_009379.1 2017754 2018497 D KEGG: nmu:Nmul_A1128 phosphoribosyltransferase; phosphoribosyltransferase 2017754..2018497 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053560 YP_001156719.1 CDS Pnuc_1943 NC_009379.1 2018516 2018986 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rso:RSc0358 tRNA/rRNA methyltransferase; RNA methyltransferase 2018516..2018986 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053468 YP_001156720.1 CDS gpsA NC_009379.1 2019002 2020024 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(2019002..2020024) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053414 YP_001156721.1 CDS Pnuc_1945 NC_009379.1 2020049 2020570 R TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: reh:H16_A0335 preprotein translocase subunit SecB; protein-export protein SecB complement(2020049..2020570) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053432 YP_001156722.1 CDS Pnuc_1946 NC_009379.1 2020595 2020849 R TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: bxe:Bxe_A4179 glutaredoxin 3; glutaredoxin 3 complement(2020595..2020849) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053252 YP_001156723.1 CDS Pnuc_1947 NC_009379.1 2020860 2021273 R PFAM: Rhodanese domain protein; KEGG: bxe:Bxe_A4180 rhodanese-related sulfurtransferase; rhodanese domain-containing protein complement(2020860..2021273) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052093 YP_001156724.1 CDS gpmA NC_009379.1 2021296 2021985 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 2021296..2021985 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053013 YP_001156725.1 CDS Pnuc_1949 NC_009379.1 2021999 2023432 D KEGG: reh:H16_A0331 C-terminal processing peptidase-3, periplasmic; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 2021999..2023432 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052178 YP_001156726.1 CDS Pnuc_1950 NC_009379.1 2023459 2024211 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rfr:Rfer_1307 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 2023459..2024211 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052865 YP_001156727.1 CDS Pnuc_1951 NC_009379.1 2024216 2025967 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: reh:H16_A0326 phosphoenolpyruvate-protein kinase (PTS system EI component); phosphoenolpyruvate-protein phosphotransferase complement(2024216..2025967) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053542 YP_001156728.1 CDS Pnuc_1952 NC_009379.1 2025970 2026239 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: azo:azo3781 phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr complement(2025970..2026239) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052186 YP_001156729.1 CDS Pnuc_1953 NC_009379.1 2026256 2026678 R PFAM: PTS system fructose subfamily IIA component; KEGG: reu:Reut_A0295 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA complement(2026256..2026678) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052209 YP_001156730.1 CDS Pnuc_1954 NC_009379.1 2026680 2027621 R KEGG: pna:Pnap_3736 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp; glutathione synthetase complement(2026680..2027621) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052477 YP_001156731.1 CDS Pnuc_1955 NC_009379.1 2027650 2028948 R TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: reu:Reut_A0293 glutamate--cysteine ligase GshA; glutamate--cysteine ligase complement(2027650..2028948) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053284 YP_001156732.1 CDS Pnuc_1956 NC_009379.1 2029054 2030538 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: reu:Reut_A0292 ammonium transporter; ammonium transporter complement(2029054..2030538) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052223 YP_001156733.1 CDS Pnuc_1957 NC_009379.1 2030552 2030890 R PFAM: nitrogen regulatory protein P-II; KEGG: reu:Reut_A0291 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(2030552..2030890) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053371 YP_001156734.1 CDS Pnuc_1958 NC_009379.1 2030915 2031751 R KEGG: rso:RSc0341 probable signal peptide protein; signal peptide protein complement(2030915..2031751) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052693 YP_001156735.1 CDS Pnuc_1959 NC_009379.1 2032015 2032272 D PFAM: protein of unknown function DUF526; KEGG: reh:H16_A0318 hypothetical protein; hypothetical protein 2032015..2032272 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052516 YP_001156736.1 CDS Pnuc_1960 NC_009379.1 2032297 2032878 R KEGG: reh:H16_A0308 hypothetical protein; hypothetical protein complement(2032297..2032878) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052741 YP_001156737.1 CDS Pnuc_1961 NC_009379.1 2032871 2033881 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(2032871..2033881) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053200 YP_001156738.1 CDS lipB NC_009379.1 2033878 2034522 R lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase complement(2033878..2034522) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051911 YP_001156739.1 CDS Pnuc_1963 NC_009379.1 2034532 2034798 R PFAM: protein of unknown function DUF493; KEGG: pna:Pnap_0245 protein of unknown function DUF493; hypothetical protein complement(2034532..2034798) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053957 YP_001156740.1 CDS Pnuc_1964 NC_009379.1 2034816 2035532 R KEGG: reh:H16_A0301 predicted hydrolase of the alpha/beta superfamily; alpha/beta hydrolase complement(2034816..2035532) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053602 YP_001156741.1 CDS Pnuc_1965 NC_009379.1 2035563 2035871 R KEGG: neu:NE1874 ferredoxin 2fe-2s protein; ferredoxin 2fe-2s protein complement(2035563..2035871) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051962 YP_001156742.1 CDS Pnuc_1966 NC_009379.1 2035888 2036982 R PFAM: VanZ family protein; KEGG: reh:H16_A0130 predicted integral membrane protein; VanZ family protein complement(2035888..2036982) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053741 YP_001156743.1 CDS Pnuc_1967 NC_009379.1 2037020 2037808 D TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: reh:H16_A0135 biotin-(acetyl-CoA carboxylase) ligase; biotin--acetyl-CoA-carboxylase ligase 2037020..2037808 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053105 YP_001156744.1 CDS Pnuc_1968 NC_009379.1 2037805 2038617 D TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; KEGG: eba:ebA4111 transcriptional regulator, Bvg acessory factor; Baf family transcriptional activator 2037805..2038617 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052047 YP_001156745.1 CDS Pnuc_1969 NC_009379.1 2038626 2039114 R TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: reh:H16_A0138 D-beta-D-heptose 1-phosphate adenylyltransferase; rfaE bifunctional protein complement(2038626..2039114) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053072 YP_001156746.1 CDS Pnuc_1970 NC_009379.1 2039206 2039787 D PFAM: glutathione peroxidase; KEGG: pol:Bpro_4659 glutathione peroxidase; glutathione peroxidase 2039206..2039787 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053242 YP_001156747.1 CDS Pnuc_1971 NC_009379.1 2039784 2041172 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mpt:Mpe_A0236 dehydrogenase; amine oxidase 2039784..2041172 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053992 YP_001156748.1 CDS Pnuc_1972 NC_009379.1 2041173 2041958 D PFAM: protein of unknown function DUF1365; KEGG: mpt:Mpe_A0235 hypothetical protein; hypothetical protein 2041173..2041958 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052680 YP_001156749.1 CDS Pnuc_1973 NC_009379.1 2041955 2043250 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A0234 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2041955..2043250 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053607 YP_001156750.1 CDS Pnuc_1974 NC_009379.1 2043247 2044023 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azo:azo3315 short-chain dehydrogenase family protein; short-chain dehydrogenase/reductase SDR 2043247..2044023 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053973 YP_001156751.1 CDS Pnuc_1975 NC_009379.1 2044047 2044694 R PFAM: DSBA oxidoreductase; KEGG: rme:Rmet_0098 DsbA oxidoreductase; DSBA oxidoreductase complement(2044047..2044694) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054008 YP_001156752.1 CDS Pnuc_1976 NC_009379.1 2044708 2045322 R PFAM: Sporulation domain protein; KEGG: ajs:Ajs_0344 sporulation domain protein; sporulation domain-containing protein complement(2044708..2045322) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053936 YP_001156753.1 CDS argS NC_009379.1 2045361 2047088 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(2045361..2047088) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052657 YP_001156754.1 CDS Pnuc_1978 NC_009379.1 2047124 2047441 D KEGG: bxe:Bxe_A4244 hypothetical protein; hypothetical protein 2047124..2047441 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053240 YP_001156755.1 CDS Pnuc_1979 NC_009379.1 2047438 2050188 R KEGG: bch:Bcen2424_2917 methionine synthase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein; methionine synthase complement(2047438..2050188) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052137 YP_001156756.1 CDS Pnuc_1980 NC_009379.1 2050185 2051249 R PFAM: homocysteine S-methyltransferase; KEGG: rme:Rmet_0087 homocysteine S-methyltransferase; methionine synthase complement(2050185..2051249) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053480 YP_001156757.1 CDS Pnuc_1982 NC_009379.1 2051690 2052775 R PFAM: beta-lactamase domain protein; KEGG: bbr:BB4943 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(2051690..2052775) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051969 YP_001156758.1 CDS Pnuc_1983 NC_009379.1 2052812 2052988 D PFAM: protein of unknown function DUF1289; KEGG: reh:H16_A0189 predicted Fe-S protein; hypothetical protein 2052812..2052988 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053995 YP_001156759.1 CDS Pnuc_1984 NC_009379.1 2052997 2053980 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfo:Pfl_2939 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase complement(2052997..2053980) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053913 YP_001156760.1 CDS Pnuc_1985 NC_009379.1 2054068 2054364 D hypothetical protein 2054068..2054364 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052084 YP_001156761.1 CDS Pnuc_1986 NC_009379.1 2054375 2054875 D PFAM: flavin reductase domain protein, FMN-binding; KEGG: bpm:BURPS1710b_1057 flavin reductase domain protein; flavin reductase domain-containing protein 2054375..2054875 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052814 YP_001156762.1 CDS Pnuc_1987 NC_009379.1 2054904 2055566 D PFAM: Glutathione S-transferase, N-terminal domain; KEGG: bxe:Bxe_A2053 glutathione S-transferase; glutathione S-transferase domain-containing protein 2054904..2055566 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052300 YP_001156763.1 CDS Pnuc_1988 NC_009379.1 2055613 2058648 R PFAM: acriflavin resistance protein; KEGG: cvi:CV1626 probable multidrug efflux protein; acriflavin resistance protein complement(2055613..2058648) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053128 YP_001156764.1 CDS Pnuc_1989 NC_009379.1 2058656 2059795 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cvi:CV1627 acriflavin resistance protein E precursor; probable RND efflux membrane fusion protein precursor; RND family efflux transporter MFP subunit complement(2058656..2059795) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053077 YP_001156765.1 CDS Pnuc_1990 NC_009379.1 2059965 2061506 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ppd:Ppro_0766 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein complement(2059965..2061506) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052745 YP_001156766.1 CDS Pnuc_1991 NC_009379.1 2061692 2063524 R TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: reh:H16_A0263 glutamine-fructose-6-phosphate transaminase (isomerizing); glucosamine--fructose-6-phosphate aminotransferase complement(2061692..2063524) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053481 YP_001156767.1 CDS Pnuc_1992 NC_009379.1 2063524 2065044 R KEGG: reh:H16_A0262 UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate acetyltransferase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase complement(2063524..2065044) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052010 YP_001156768.1 CDS Pnuc_1993 NC_009379.1 2065041 2065949 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(2065041..2065949) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053751 YP_001156769.1 CDS Pnuc_1994 NC_009379.1 2065988 2066383 R KEGG: reh:H16_A0259 dihydroneopterin aldolase; dihydroneopterin aldolase complement(2065988..2066383) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052512 YP_001156770.1 CDS Pnuc_1995 NC_009379.1 2066411 2067232 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rme:Rmet_0182 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2066411..2067232) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051890 YP_001156771.1 CDS Pnuc_1996 NC_009379.1 2067258 2068445 D PFAM: protein of unknown function DUF185; KEGG: bam:Bamb_3024 protein of unknown function DUF185; hypothetical protein 2067258..2068445 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052192 YP_001156772.1 CDS Pnuc_1997 NC_009379.1 2068449 2069579 R PFAM: Polynucleotide adenylyltransferase region; KEGG: bpm:BURPS1710b_0457 tRNA nucleotidyltransferase; polynucleotide adenylyltransferase complement(2068449..2069579) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052513 YP_001156773.1 CDS Pnuc_1998 NC_009379.1 2069579 2070487 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; KEGG: rso:RSc0087 NADH-ubiquinone oxidoreductase oxidoreductase; NAD-dependent epimerase/dehydratase complement(2069579..2070487) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052509 YP_001156774.1 CDS Pnuc_1999 NC_009379.1 2070516 2072402 R PFAM: Lytic transglycosylase, catalytic; KEGG: reu:Reut_A0219 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic complement(2070516..2072402) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052063 YP_001156775.1 CDS Pnuc_2000 NC_009379.1 2072548 2073174 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: reu:Reut_A0218 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 2072548..2073174 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052328 YP_001156776.1 CDS Pnuc_2001 NC_009379.1 2073203 2074033 R TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: rfr:Rfer_0654 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(2073203..2074033) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053353 YP_001156777.1 CDS Pnuc_2002 NC_009379.1 2074071 2075516 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(2074071..2075516) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052656 YP_001156778.1 CDS Pnuc_2003 NC_009379.1 2075751 2076917 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(2075751..2076917) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052258 YP_001156779.1 CDS Pnuc_2004 NC_009379.1 2077036 2077983 D PFAM: lipid A biosynthesis acyltransferase; KEGG: reu:Reut_A1946 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 2077036..2077983 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052800 YP_001156780.1 CDS Pnuc_2005 NC_009379.1 2078001 2078900 D PFAM: lipid A biosynthesis acyltransferase; KEGG: reh:H16_A0228 lauroyl/myristoyl acyltransferase; lipid A biosynthesis acyltransferase 2078001..2078900 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052663 YP_001156781.1 CDS Pnuc_2006 NC_009379.1 2078959 2079813 D PFAM: diaminopimelate epimerase; KEGG: reh:H16_A0227 diaminopimelate epimerase; diaminopimelate epimerase 2078959..2079813 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053499 YP_001156782.1 CDS pyrE NC_009379.1 2079832 2080500 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(2079832..2080500) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053122 YP_001156783.1 CDS Pnuc_2008 NC_009379.1 2080509 2081291 D KEGG: rme:Rmet_0149 exodeoxyribonuclease III (xth); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 2080509..2081291 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052322 YP_001156784.1 CDS Pnuc_2009 NC_009379.1 2081288 2082535 R PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0199 major facilitator superfamily MFS_1; major facilitator transporter complement(2081288..2082535) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052144 YP_001156785.1 CDS Pnuc_2010 NC_009379.1 2082606 2083199 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: reu:Reut_A0187 methionine biosynthesis MetW; methionine biosynthesis protein MetW complement(2082606..2083199) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052812 YP_001156786.1 CDS metX NC_009379.1 2083196 2084335 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(2083196..2084335) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053201 YP_001156787.1 CDS slmA NC_009379.1 2084332 2084982 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(2084332..2084982) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053605 YP_001156788.1 CDS Pnuc_2013 NC_009379.1 2085001 2085903 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(2085001..2085903) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052805 YP_001156789.1 CDS Pnuc_2014 NC_009379.1 2085917 2086405 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: reu:Reut_A0162 Zn-finger, prokaryotic DksA/TraR C4 type; TraR/DksA family transcriptional regulator complement(2085917..2086405) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052658 YP_001156790.1 CDS Pnuc_2015 NC_009379.1 2086518 2087579 R PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rso:RSc0047 hypothetical protein; cobalamin synthesis protein, P47K complement(2086518..2087579) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053987 YP_001156791.1 CDS Pnuc_2016 NC_009379.1 2087649 2088650 R PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rso:RSc0052 probable site specific integrase/recombinase; phage integrase family protein complement(2087649..2088650) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053345 YP_001156792.1 CDS Pnuc_2017 NC_009379.1 2088631 2089305 R PFAM: protein of unknown function DUF484; KEGG: rso:RSc0053 hypothetical protein; hypothetical protein complement(2088631..2089305) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052954 YP_001156793.1 CDS gatB NC_009379.1 2089333 2090802 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(2089333..2090802) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052889 YP_001156794.1 CDS gatA NC_009379.1 2090802 2092319 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(2090802..2092319) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052043 YP_001156795.1 CDS Pnuc_2020 NC_009379.1 2092316 2092609 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: rme:Rmet_0050 glutamyl-tRNA(Gln) amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C complement(2092316..2092609) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052256 YP_001156796.1 CDS Pnuc_2021 NC_009379.1 2092671 2093714 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 2092671..2093714 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053354 YP_001156797.1 CDS Pnuc_2022 NC_009379.1 2093739 2094674 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 2093739..2094674 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053623 YP_001156798.1 CDS Pnuc_2023 NC_009379.1 2094671 2095195 D KEGG: reh:H16_A0115 rod shape-determining protein MreD; rod shape-determining protein MreD 2094671..2095195 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052939 YP_001156799.1 CDS Pnuc_2024 NC_009379.1 2095204 2097111 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rme:Rmet_0054 penicillin-binding protein, transpeptidase; peptidoglycan glycosyltransferase 2095204..2097111 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053187 YP_001156800.1 CDS Pnuc_2025 NC_009379.1 2097093 2098244 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: rme:Rmet_0055 rod shape-determining protein RodA; rod shape-determining protein RodA 2097093..2098244 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053342 YP_001156801.1 CDS Pnuc_2026 NC_009379.1 2098320 2098640 R PFAM: histone family protein DNA-binding protein; KEGG: rme:Rmet_4749 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(2098320..2098640) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051894 YP_001156802.1 CDS Pnuc_2027 NC_009379.1 2098718 2099083 R KEGG: gme:Gmet_2579 hypothetical protein; hypothetical protein complement(2098718..2099083) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053251 YP_001156803.1 CDS Pnuc_2028 NC_009379.1 2099222 2100136 D PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: mpt:Mpe_A2325 hypothetical protein; aspartyl/asparaginyl beta-hydroxylase 2099222..2100136 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052295 YP_001156804.1 CDS Pnuc_2029 NC_009379.1 2100152 2100448 R PFAM: protein of unknown function DUF167; KEGG: dar:Daro_3887 conserved hypothetical protein 251; hypothetical protein complement(2100152..2100448) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052510 YP_001156805.1 CDS Pnuc_2030 NC_009379.1 2100471 2101136 D PFAM: carbonic anhydrase; KEGG: xfa:XF0880 carbonic anhydrase; carbonate dehydratase 2100471..2101136 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052142 YP_001156806.1 CDS Pnuc_2031 NC_009379.1 2101143 2102042 D PFAM: lipid A biosynthesis acyltransferase; KEGG: reh:H16_A0228 lauroyl/myristoyl acyltransferase; lipid A biosynthesis acyltransferase 2101143..2102042 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052472 YP_001156807.1 CDS Pnuc_2032 NC_009379.1 2102068 2102820 D PFAM: metallophosphoesterase; KEGG: mpt:Mpe_A3031 serine/threonine phosphatase; metallophosphoesterase 2102068..2102820 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052046 YP_001156808.1 CDS Pnuc_2033 NC_009379.1 2102828 2104246 D PFAM: protein kinase; UspA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ade:Adeh_3699 serine/threonine protein kinase; protein kinase 2102828..2104246 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052316 YP_001156809.1 CDS Pnuc_2034 NC_009379.1 2104253 2105581 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(2104253..2105581) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052807 YP_001156810.1 CDS Pnuc_2035 NC_009379.1 2105683 2106420 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bbr:BB2525 RNA pseudouridylate synthase; pseudouridine synthase 2105683..2106420 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053135 YP_001156811.1 CDS Pnuc_2036 NC_009379.1 2106584 2108107 D TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; KEGG: neu:NE2481 peptide chain release factor RF-3; peptide chain release factor 3 2106584..2108107 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053339 YP_001156812.1 CDS Pnuc_2037 NC_009379.1 2108386 2108619 R KEGG: rfr:Rfer_3643 hypothetical protein; hypothetical protein complement(2108386..2108619) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052642 YP_001156813.1 CDS Pnuc_2038 NC_009379.1 2109040 2109435 D PFAM: GCN5-related N-acetyltransferase; KEGG: pmu:PM1553 unknown; N-acetyltransferase GCN5 2109040..2109435 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052076 YP_001156814.1 CDS Pnuc_2039 NC_009379.1 2109457 2110101 D PFAM: Phosphoglycerate mutase; KEGG: cvi:CV3211 phosphoglycerate mutase 2; phosphoglycerate mutase 2109457..2110101 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053618 YP_001156815.1 CDS Pnuc_2040 NC_009379.1 2110136 2110906 D PFAM: MltA-interacting MipA family protein; KEGG: par:Psyc_1656 outer membrane protein/scaffolding protein MipA; MltA-interacting MipA family protein 2110136..2110906 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052832 YP_001156816.1 CDS Pnuc_2041 NC_009379.1 2110939 2111901 R PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4413 hypothetical protein; hypothetical protein complement(2110939..2111901) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5054021 YP_001156817.1 CDS Pnuc_2042 NC_009379.1 2112001 2112246 R hypothetical protein complement(2112001..2112246) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052026 YP_001156818.1 CDS Pnuc_2043 NC_009379.1 2112432 2113475 R PFAM: alpha/beta hydrolase fold; KEGG: mag:amb0624 predicted hydrolase or acyltransferase; alpha/beta hydrolase fold complement(2112432..2113475) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052671 YP_001156819.1 CDS Pnuc_2044 NC_009379.1 2113678 2115831 D KEGG: vch:VC1560 catalase/peroxidase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 2113678..2115831 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053544 YP_001156820.1 CDS Pnuc_2045 NC_009379.1 2115918 2116316 R KEGG: vpa:VPA0752 glutathione S-transfersae-related protein; glutathione S-transfersae-related protein complement(2115918..2116316) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052090 YP_001156821.1 CDS Pnuc_2046 NC_009379.1 2116327 2117010 R KEGG: pol:Bpro_4516 haloacid dehalogenase, type II; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase complement(2116327..2117010) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053965 YP_001156822.1 CDS Pnuc_2047 NC_009379.1 2117081 2117440 R PFAM: protein of unknown function DUF486; KEGG: neu:NE1692 hypothetical protein; hypothetical protein complement(2117081..2117440) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053919 YP_001156823.1 CDS Pnuc_2048 NC_009379.1 2117549 2117998 R KEGG: bja:blr3488 hypothetical protein; hypothetical protein complement(2117549..2117998) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052164 YP_001156824.1 CDS Pnuc_2049 NC_009379.1 2118184 2118495 R hypothetical protein complement(2118184..2118495) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052167 YP_001156825.1 CDS Pnuc_2050 NC_009379.1 2118559 2119209 R KEGG: bja:bll2644 hypothetical protein; hypothetical protein complement(2118559..2119209) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052698 YP_001156826.1 CDS Pnuc_2051 NC_009379.1 2119323 2120084 R PFAM: protein of unknown function DUF1275; KEGG: pol:Bpro_0910 protein of unknown function DUF1275; hypothetical protein complement(2119323..2120084) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053101 YP_001156827.1 CDS Pnuc_2052 NC_009379.1 2120479 2121051 R PFAM: cyclase/dehydrase; KEGG: plt:Plut_0548 hypothetical protein; cyclase/dehydrase complement(2120479..2121051) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053243 YP_001156828.1 CDS Pnuc_2053 NC_009379.1 2121143 2122132 R PFAM: Catalase domain protein; KEGG: dar:Daro_0523 catalase, N-terminal; catalase domain-containing protein complement(2121143..2122132) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053523 YP_001156829.1 CDS Pnuc_2054 NC_009379.1 2122152 2122571 R SMART: CHRD domain containing protein; KEGG: nmu:Nmul_A1716 CHRD; CHRD domain-containing protein complement(2122152..2122571) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053899 YP_001156830.1 CDS Pnuc_2055 NC_009379.1 2122715 2123608 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ajs:Ajs_2254 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2122715..2123608) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053989 YP_001156831.1 CDS Pnuc_2056 NC_009379.1 2123693 2124652 D PFAM: protein of unknown function DUF897; KEGG: mpt:Mpe_A0139 hypothetical protein; hypothetical protein 2123693..2124652 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052361 YP_001156832.1 CDS Pnuc_2057 NC_009379.1 2124670 2125524 D KEGG: gvi:glr2085 hypothetical protein; hypothetical protein 2124670..2125524 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053994 YP_001156833.1 CDS Pnuc_2058 NC_009379.1 2125656 2126240 R PFAM: Uracil-DNA glycosylase superfamily; KEGG: ilo:IL2499 uracil-DNA glycosylase; uracil-DNA glycosylase complement(2125656..2126240) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052237 YP_001156834.1 CDS Pnuc_2059 NC_009379.1 2126255 2127121 R PFAM: Ion transport 2 domain protein, ; K+ channel, inward rectifier, conserved region 2 domain protein; KEGG: ava:Ava_0532 K+ channel, inward rectifier; K+ channel inward rectifier domain-containing protein complement(2126255..2127121) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053005 YP_001156835.1 CDS Pnuc_2060 NC_009379.1 2127255 2128361 R PFAM: Patatin; KEGG: aau:AAur_3745 hypothetical protein; patatin complement(2127255..2128361) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053466 YP_001156836.1 CDS Pnuc_2061 NC_009379.1 2130137 2130574 R KEGG: pin:Ping_2941 hypothetical protein; hypothetical protein complement(2130137..2130574) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053682 YP_001156837.1 CDS Pnuc_2062 NC_009379.1 2131313 2132089 D hypothetical protein 2131313..2132089 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052122 YP_001156838.1 CDS Pnuc_2063 NC_009379.1 2132259 2132825 D PFAM: phage integrase family protein; KEGG: mag:amb3688 integrase; phage integrase family protein 2132259..2132825 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052974 YP_001156839.1 CDS Pnuc_2064 NC_009379.1 2132858 2133739 R hypothetical protein complement(2132858..2133739) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052966 YP_001156840.1 CDS Pnuc_2065 NC_009379.1 2133881 2134663 D KEGG: mag:amb4289 hypothetical protein; hypothetical protein 2133881..2134663 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052684 YP_001156841.1 CDS Pnuc_2066 NC_009379.1 2134682 2135401 D SMART: AAA ATPase; KEGG: cel:F31E3.3 RFC (DNA replication factor) family; ATPase AAA 2134682..2135401 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052094 YP_001156842.1 CDS Pnuc_2067 NC_009379.1 2135629 2136903 R PFAM: phage integrase family protein; KEGG: she:Shewmr4_3198 phage integrase family protein; phage integrase family protein complement(2135629..2136903) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052970 YP_001156843.1 CDS Pnuc_2068 NC_009379.1 2137005 2137289 R hypothetical protein complement(2137005..2137289) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053895 YP_001156844.1 CDS Pnuc_2069 NC_009379.1 2137349 2137708 R hypothetical protein complement(2137349..2137708) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053933 YP_001156845.1 CDS Pnuc_2070 NC_009379.1 2137871 2138224 R KEGG: rme:Rmet_5343 hypothetical protein; hypothetical protein complement(2137871..2138224) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053889 YP_001156846.1 CDS Pnuc_2071 NC_009379.1 2138360 2138869 D KEGG: pna:Pnap_4675 hypothetical protein; hypothetical protein 2138360..2138869 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053985 YP_001156847.1 CDS Pnuc_2072 NC_009379.1 2139124 2139819 R hypothetical protein complement(2139124..2139819) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053952 YP_001156848.1 CDS Pnuc_2073 NC_009379.1 2140109 2142313 R PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: rme:Rmet_4822 protein of unknown function DUF181; hypothetical protein complement(2140109..2142313) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052583 YP_001156849.1 CDS Pnuc_2074 NC_009379.1 2142370 2143053 R PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: bxe:Bxe_A4409 two component transcriptional regulator, fis family; two component Fis family transcriptional regulator complement(2142370..2143053) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053462 YP_001156850.1 CDS Pnuc_2075 NC_009379.1 2143056 2145368 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: reu:Reut_A3403 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase complement(2143056..2145368) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052767 YP_001156851.1 CDS Pnuc_2076 NC_009379.1 2145365 2145946 R KEGG: rme:Rmet_3561 periplasmic ligand-binding sensor protein; periplasmic ligand-binding sensor protein complement(2145365..2145946) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053694 YP_001156852.1 CDS Pnuc_2077 NC_009379.1 2145943 2147259 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: rme:Rmet_3562 sun protein; sun protein complement(2145943..2147259) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053257 YP_001156853.1 CDS Pnuc_2078 NC_009379.1 2147285 2148283 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: bur:Bcep18194_A6477 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(2147285..2148283) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052775 YP_001156854.1 CDS def NC_009379.1 2148293 2148808 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(2148293..2148808) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052440 YP_001156855.1 CDS Pnuc_2080 NC_009379.1 2148880 2149569 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: chy:CHY_1795 DNA proccessing protein DprA; DNA protecting protein DprA 2148880..2149569 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053158 YP_001156856.1 CDS Pnuc_2081 NC_009379.1 2149816 2152446 D decatenates replicating daughter chromosomes; DNA topoisomerase III 2149816..2152446 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053540 YP_001156857.1 CDS Pnuc_2082 NC_009379.1 2152272 2153507 R PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc1709 lipoprotein; FAD dependent oxidoreductase complement(2152272..2153507) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052905 YP_001156858.1 CDS Pnuc_2083 NC_009379.1 2153547 2155412 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(2153547..2155412) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051978 YP_001156859.1 CDS trmE NC_009379.1 2155503 2156876 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(2155503..2156876) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051971 YP_001156860.1 CDS Pnuc_2085 NC_009379.1 2156916 2158589 R PFAM: 60 kDa inner membrane insertion protein; KEGG: reh:H16_A3744 inner membrane protein; hypothetical protein complement(2156916..2158589) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053348 YP_001156861.1 CDS Pnuc_2086 NC_009379.1 2158605 2158838 R PFAM: protein of unknown function DUF37; KEGG: cch:Cag_2031 protein of unknown function DUF37; hypothetical protein complement(2158605..2158838) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052476 YP_001156862.1 CDS Pnuc_2087 NC_009379.1 2158840 2159157 R TIGRFAM: ribonuclease P protein component; ribonuclease P protein component complement(2158840..2159157) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052027 YP_001156863.1 CDS rpmH NC_009379.1 2159166 2159300 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(2159166..2159300) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053397 Pnuc_R0001 tRNA Pnuc_R0001 NC_009379.1 32310 32385 R tRNA-Arg complement(32310..32385) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052858 Pnuc_R0003 tRNA Pnuc_R0003 NC_009379.1 38418 38494 D tRNA-Ile 38418..38494 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052007 Pnuc_R0004 tRNA Pnuc_R0004 NC_009379.1 38525 38600 D tRNA-Ala 38525..38600 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052823 Pnuc_R0007 tRNA Pnuc_R0007 NC_009379.1 42067 42151 D tRNA-Tyr 42067..42151 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052033 Pnuc_R0008 tRNA Pnuc_R0008 NC_009379.1 42157 42230 D tRNA-Gly 42157..42230 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051984 Pnuc_R0009 tRNA Pnuc_R0009 NC_009379.1 42251 42325 D tRNA-Thr 42251..42325 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052092 Pnuc_R0010 tRNA Pnuc_R0010 NC_009379.1 43590 43665 D tRNA-Trp 43590..43665 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053145 Pnuc_R0011 tRNA Pnuc_R0011 NC_009379.1 123899 123974 D tRNA-Thr 123899..123974 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053026 Pnuc_R0012 tRNA Pnuc_R0012 NC_009379.1 407922 407997 D tRNA-Gly 407922..407997 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053052 Pnuc_R0013 tRNA Pnuc_R0013 NC_009379.1 408047 408120 D tRNA-Cys 408047..408120 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052053 Pnuc_R0015 tRNA Pnuc_R0015 NC_009379.1 580448 580523 R tRNA-Lys complement(580448..580523) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051963 Pnuc_R0016 tRNA Pnuc_R0016 NC_009379.1 607870 607954 D tRNA-Leu 607870..607954 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052773 Pnuc_R0017 tRNA Pnuc_R0017 NC_009379.1 670849 670924 D tRNA-Thr 670849..670924 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053390 Pnuc_R0018 tRNA Pnuc_R0018 NC_009379.1 693706 693795 D tRNA-Ser 693706..693795 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053517 Pnuc_R0020 tRNA Pnuc_R0020 NC_009379.1 823230 823306 D tRNA-Val 823230..823306 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052196 Pnuc_R0021 tRNA Pnuc_R0021 NC_009379.1 830898 830974 D tRNA-Pro 830898..830974 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052627 Pnuc_R0022 tRNA Pnuc_R0022 NC_009379.1 857068 857162 D tRNA-Ser 857068..857162 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053968 Pnuc_R0023 tRNA Pnuc_R0023 NC_009379.1 881871 881946 R tRNA-Asn complement(881871..881946) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053597 Pnuc_R0024 tRNA Pnuc_R0024 NC_009379.1 890000 890074 R tRNA-Arg complement(890000..890074) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053276 Pnuc_R0025 tRNA Pnuc_R0025 NC_009379.1 930035 930121 D tRNA-Leu 930035..930121 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053831 Pnuc_R0026 tRNA Pnuc_R0026 NC_009379.1 936306 936381 D tRNA-Val 936306..936381 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053174 Pnuc_R0027 tRNA Pnuc_R0027 NC_009379.1 954419 954494 D tRNA-Ala 954419..954494 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052497 Pnuc_R0028 tRNA Pnuc_R0028 NC_009379.1 954529 954604 D tRNA-Glu 954529..954604 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052136 Pnuc_R0029 tRNA Pnuc_R0029 NC_009379.1 954655 954731 D tRNA-Asp 954655..954731 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052721 Pnuc_R0030 tRNA Pnuc_R0030 NC_009379.1 1005961 1006037 R tRNA-Arg complement(1005961..1006037) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053125 Pnuc_R0031 tRNA Pnuc_R0031 NC_009379.1 1006074 1006150 R tRNA-Pro complement(1006074..1006150) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052009 Pnuc_R0032 tRNA Pnuc_R0032 NC_009379.1 1055841 1055925 R tRNA-Leu complement(1055841..1055925) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053293 Pnuc_R0033 tRNA Pnuc_R0033 NC_009379.1 1078788 1078864 R tRNA-Arg complement(1078788..1078864) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052315 Pnuc_R0034 tRNA Pnuc_R0034 NC_009379.1 1096230 1096319 R tRNA-Ser complement(1096230..1096319) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053385 Pnuc_R0035 tRNA Pnuc_R0035 NC_009379.1 1186934 1187024 R tRNA-Ser complement(1186934..1187024) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052521 Pnuc_R0036 tRNA Pnuc_R0036 NC_009379.1 1204350 1204438 R tRNA-Leu complement(1204350..1204438) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052843 Pnuc_R0037 tRNA Pnuc_R0037 NC_009379.1 1235221 1235296 R tRNA-His complement(1235221..1235296) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053518 Pnuc_R0038 tRNA Pnuc_R0038 NC_009379.1 1342971 1343057 D tRNA-Leu 1342971..1343057 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053809 Pnuc_R0039 tRNA Pnuc_R0039 NC_009379.1 1540411 1540487 D tRNA-Met 1540411..1540487 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052668 Pnuc_R0040 tRNA Pnuc_R0040 NC_009379.1 1719678 1719752 D tRNA-Cys 1719678..1719752 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051979 Pnuc_R0041 tRNA Pnuc_R0041 NC_009379.1 1923798 1923874 R tRNA-Met complement(1923798..1923874) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052077 Pnuc_R0043 tRNA Pnuc_R0043 NC_009379.1 1999091 1999167 D tRNA-Gln 1999091..1999167 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052789 Pnuc_R0044 tRNA Pnuc_R0044 NC_009379.1 2139906 2139981 R tRNA-Phe complement(2139906..2139981) Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052413 Pnuc_R0002 rRNA Pnuc_R0002 NC_009379.1 36826 38361 D 16S ribosomal RNA 36826..38361 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5053039 Pnuc_R0005 rRNA Pnuc_R0005 NC_009379.1 38869 41743 D 23S ribosomal RNA 38869..41743 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5051982 Pnuc_R0006 rRNA Pnuc_R0006 NC_009379.1 41846 41963 D 5S ribosomal RNA 41846..41963 Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 5052507