-- dump date 20140619_234842 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 365044000001 SEQ_END SEQ_END NC_008757.1 353291 353291 DR NC_008757.1; contig end 353291..353291 Polaromonas naphthalenivorans CJ2 365044000002 SEQ_END SEQ_END NC_008758.1 190172 190172 DR NC_008758.1; contig end 190172..190172 Polaromonas naphthalenivorans CJ2 365044000003 SEQ_END SEQ_END NC_008759.1 171866 171866 DR NC_008759.1; contig end 171866..171866 Polaromonas naphthalenivorans CJ2 365044000004 SEQ_END SEQ_END NC_008760.1 143747 143747 DR NC_008760.1; contig end 143747..143747 Polaromonas naphthalenivorans CJ2 365044000005 SEQ_END SEQ_END NC_008761.1 58808 58808 DR NC_008761.1; contig end 58808..58808 Polaromonas naphthalenivorans CJ2 365044000006 SEQ_END SEQ_END NC_008762.1 21611 21611 DR NC_008762.1; contig end 21611..21611 Polaromonas naphthalenivorans CJ2 365044000007 SEQ_END SEQ_END NC_008763.1 9898 9898 DR NC_008763.1; contig end 9898..9898 Polaromonas naphthalenivorans CJ2 365044000008 SEQ_END SEQ_END NC_008764.1 6459 6459 DR NC_008764.1; contig end 6459..6459 Polaromonas naphthalenivorans CJ2 365044000009 SEQ_END SEQ_END NC_008781.1 4410291 4410291 DR NC_008781.1; contig end 4410291..4410291 Polaromonas naphthalenivorans CJ2 YP_973154.1 CDS Pnap_4123 NC_008757.1 483 1040 R PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rru:Rru_B0010 resolvase; resolvase domain-containing protein complement(483..1040) Polaromonas naphthalenivorans CJ2 4685348 YP_973155.1 CDS Pnap_4124 NC_008757.1 1218 1526 D KEGG: rme:Rmet_6179 transposase Tn3; transposase Tn3 1218..1526 Polaromonas naphthalenivorans CJ2 4685241 YP_973156.1 CDS Pnap_4125 NC_008757.1 1477 2436 R PFAM: transposase, IS4 family protein; KEGG: bte:BTH_II0087 transposase; transposase, IS4 family protein complement(1477..2436) Polaromonas naphthalenivorans CJ2 4685471 YP_973157.1 CDS Pnap_4126 NC_008757.1 2737 3492 R PFAM: metallophosphoesterase; KEGG: serine/threonine protein phosphatase, putative; metallophosphoesterase complement(2737..3492) Polaromonas naphthalenivorans CJ2 4685208 YP_973158.1 CDS Pnap_4127 NC_008757.1 3514 5871 R hypothetical protein complement(3514..5871) Polaromonas naphthalenivorans CJ2 4685258 YP_973159.1 CDS Pnap_4128 NC_008757.1 6104 7399 R PFAM: HipA domain protein; KEGG: pol:Bpro_1566 HipA-like; HipA domain-containing protein complement(6104..7399) Polaromonas naphthalenivorans CJ2 4685217 YP_973160.1 CDS Pnap_4129 NC_008757.1 7465 7740 D hypothetical protein 7465..7740 Polaromonas naphthalenivorans CJ2 4685252 YP_973161.1 CDS Pnap_4130 NC_008757.1 8115 8825 D hypothetical protein 8115..8825 Polaromonas naphthalenivorans CJ2 4685272 YP_973162.1 CDS Pnap_4133 NC_008757.1 9783 10319 R hypothetical protein complement(9783..10319) Polaromonas naphthalenivorans CJ2 4685453 YP_973163.1 CDS Pnap_4134 NC_008757.1 10764 11669 D KEGG: rso:RS02232 hypothetical lipoprotein transmembrane; hypothetical protein 10764..11669 Polaromonas naphthalenivorans CJ2 4685402 YP_973164.1 CDS Pnap_4135 NC_008757.1 11757 12239 D hypothetical protein 11757..12239 Polaromonas naphthalenivorans CJ2 4685324 YP_973165.1 CDS Pnap_4136 NC_008757.1 12451 12690 D hypothetical protein 12451..12690 Polaromonas naphthalenivorans CJ2 4685414 YP_973166.1 CDS Pnap_4137 NC_008757.1 12802 14004 D PFAM: phage integrase family protein; KEGG: bxe:Bxe_C1182 putative phage integrase; phage integrase family protein 12802..14004 Polaromonas naphthalenivorans CJ2 4685396 YP_973167.1 CDS Pnap_4138 NC_008757.1 14028 14369 D PFAM: protein of unknown function DUF891; KEGG: bxe:Bxe_C1183 hypothetical protein; hypothetical protein 14028..14369 Polaromonas naphthalenivorans CJ2 4685474 YP_973168.1 CDS Pnap_4139 NC_008757.1 14356 14679 D KEGG: bxe:Bxe_C1184 predicted transcriptional regulator; putative transcriptional regulator 14356..14679 Polaromonas naphthalenivorans CJ2 4685473 YP_973169.1 CDS Pnap_4140 NC_008757.1 15183 15839 R PFAM: OmpW family protein; KEGG: bxe:Bxe_C1185 outer membrane protein (porin), OmpW family; OmpW family protein complement(15183..15839) Polaromonas naphthalenivorans CJ2 4685462 YP_973170.1 CDS Pnap_4141 NC_008757.1 15986 16846 R PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_C1186 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BphD); alpha/beta hydrolase fold complement(15986..16846) Polaromonas naphthalenivorans CJ2 4685387 YP_973171.1 CDS Pnap_4142 NC_008757.1 16917 17957 R catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase complement(16917..17957) Polaromonas naphthalenivorans CJ2 4685372 YP_973172.1 CDS Pnap_4143 NC_008757.1 17975 18889 R catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase complement(17975..18889) Polaromonas naphthalenivorans CJ2 4685445 YP_973173.1 CDS Pnap_4144 NC_008757.1 18910 19692 R PFAM: Hydratase/decarboxylase; KEGG: bxe:Bxe_C1189 2-hydroxypenta-2,4-dienoate hydratase (BphH); 4-oxalocrotonate decarboxylase complement(18910..19692) Polaromonas naphthalenivorans CJ2 4685416 YP_973174.1 CDS Pnap_4145 NC_008757.1 19780 20391 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_C1190 glutathione S-transferase (BphK); glutathione S-transferase domain-containing protein complement(19780..20391) Polaromonas naphthalenivorans CJ2 4685347 YP_973175.1 CDS Pnap_4146 NC_008757.1 20423 21301 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_C1191 2,3-dihydroxybiphenyl-1,2-dioxygenase (BphC); glyoxalase/bleomycin resistance protein/dioxygenase complement(20423..21301) Polaromonas naphthalenivorans CJ2 4685175 YP_973176.1 CDS Pnap_4147 NC_008757.1 21312 22142 R Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase complement(21312..22142) Polaromonas naphthalenivorans CJ2 4685187 YP_973177.1 CDS Pnap_4148 NC_008757.1 22185 23411 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_C1193 biphenyl 2,3-dioxygenase ferredoxin reductase subunit (BphA4); FAD-dependent pyridine nucleotide-disulphide oxidoreductase complement(22185..23411) Polaromonas naphthalenivorans CJ2 4685366 YP_973178.1 CDS Pnap_4149 NC_008757.1 23408 23737 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_C1194 biphenyl 2,3-dioxygenase ferredoxin subunit (BphA3); Rieske (2Fe-2S) domain-containing protein complement(23408..23737) Polaromonas naphthalenivorans CJ2 4685433 YP_973179.1 CDS Pnap_4150 NC_008757.1 23849 24256 R KEGG: bxe:Bxe_C1195 hypothetical membrane protein, biphenyl pathway; membrane protein, biphenyl pathway complement(23849..24256) Polaromonas naphthalenivorans CJ2 4685430 YP_973180.1 CDS Pnap_4151 NC_008757.1 24295 24861 R PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: bxe:Bxe_C1196 biphenyl 2,3-dioxygenase small subunit (BphA2); benzene 1,2-dioxygenase complement(24295..24861) Polaromonas naphthalenivorans CJ2 4685280 YP_973181.1 CDS Pnap_4152 NC_008757.1 24982 26352 R PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_C1197 biphenyl 2,3-dioxygenase alpha subunit (BphA1); ring hydroxylating dioxygenase, alpha subunit complement(24982..26352) Polaromonas naphthalenivorans CJ2 4685218 YP_973182.1 CDS Pnap_4153 NC_008757.1 26444 27178 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bxe:Bxe_C1198 transcriptional regulator BphR, GntR family; GntR family transcriptional regulator complement(26444..27178) Polaromonas naphthalenivorans CJ2 4685298 YP_973183.1 CDS Pnap_4154 NC_008757.1 27260 27766 R KEGG: psb:Psyr_2657 hypothetical protein; hypothetical protein complement(27260..27766) Polaromonas naphthalenivorans CJ2 4685411 YP_973184.1 CDS Pnap_4155 NC_008757.1 27988 28539 R hypothetical protein complement(27988..28539) Polaromonas naphthalenivorans CJ2 4685370 YP_973185.1 CDS Pnap_4156 NC_008757.1 28650 29477 D PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_1477 protein of unknown function DUF932; hypothetical protein 28650..29477 Polaromonas naphthalenivorans CJ2 4685439 YP_973186.1 CDS Pnap_4157 NC_008757.1 30595 31101 D PFAM: DNA repair protein RadC; KEGG: rso:RSc2620 hypothetical protein; DNA repair protein RadC 30595..31101 Polaromonas naphthalenivorans CJ2 4685467 YP_973187.1 CDS Pnap_4159 NC_008757.1 31719 33758 D PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_1478 ParB-like nuclease; nuclease 31719..33758 Polaromonas naphthalenivorans CJ2 4685365 YP_973188.1 CDS Pnap_4161 NC_008757.1 34523 34831 D PFAM: protein of unknown function DUF736; KEGG: rso:RSc2613 hypothetical protein; hypothetical protein 34523..34831 Polaromonas naphthalenivorans CJ2 4685460 YP_973189.1 CDS Pnap_4162 NC_008757.1 34878 35174 R PFAM: helix-turn-helix domain protein; KEGG: xac:XAC2176 hypothetical protein; XRE family transcriptional regulator complement(34878..35174) Polaromonas naphthalenivorans CJ2 4685428 YP_973190.1 CDS Pnap_4163 NC_008757.1 35617 35967 D KEGG: rso:RSc2609 probable lipoprotein; putative lipoprotein 35617..35967 Polaromonas naphthalenivorans CJ2 4685429 YP_973191.1 CDS Pnap_4164 NC_008757.1 36329 37126 D KEGG: zmo:ZMO1936 hypothetical protein; hypothetical protein 36329..37126 Polaromonas naphthalenivorans CJ2 4685427 YP_973192.1 CDS Pnap_4165 NC_008757.1 37211 37513 D KEGG: zmo:ZMO1937 hypothetical protein; hypothetical protein 37211..37513 Polaromonas naphthalenivorans CJ2 4685422 YP_973193.1 CDS Pnap_4166 NC_008757.1 37549 38400 D KEGG: rso:RSc2606 hypothetical replication initiator and transcription repressor protein; putative replication initiator and transcription repressor protein 37549..38400 Polaromonas naphthalenivorans CJ2 4685424 YP_973194.1 CDS Pnap_4167 NC_008757.1 38651 39289 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_1486 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 38651..39289 Polaromonas naphthalenivorans CJ2 4685420 YP_973195.1 CDS Pnap_4168 NC_008757.1 39286 39528 D KEGG: rme:Rmet_3022 hypothetical protein; hypothetical protein 39286..39528 Polaromonas naphthalenivorans CJ2 4685417 YP_973196.1 CDS Pnap_4169 NC_008757.1 39525 40070 D KEGG: rme:Rmet_1257 hypothetical protein; hypothetical protein 39525..40070 Polaromonas naphthalenivorans CJ2 4685397 YP_973197.1 CDS Pnap_4170 NC_008757.1 40067 40618 D KEGG: rme:Rmet_1488 putative conjugal transfer TRAF transmembrane protein; putative conjugal transfer TRAF transmembrane protein 40067..40618 Polaromonas naphthalenivorans CJ2 4685330 YP_973198.1 CDS Pnap_4171 NC_008757.1 41133 43094 D KEGG: rme:Rmet_1489 hypothetical protein; hypothetical protein 41133..43094 Polaromonas naphthalenivorans CJ2 4685343 YP_973199.1 CDS Pnap_4172 NC_008757.1 43455 44072 D PFAM: regulatory protein, TetR; KEGG: pol:Bpro_5551 transcriptional regulator, TetR family; TetR family transcriptional regulator 43455..44072 Polaromonas naphthalenivorans CJ2 4685349 YP_973200.1 CDS Pnap_4173 NC_008757.1 44142 44729 D PFAM: Late embryogenesis abundant protein; KEGG: pol:Bpro_5552 late embryogenesis abundant protein; late embryogenesis abundant protein 44142..44729 Polaromonas naphthalenivorans CJ2 4685354 YP_973201.1 CDS Pnap_4174 NC_008757.1 44817 45263 D KEGG: pol:Bpro_5553 hypothetical protein; hypothetical protein 44817..45263 Polaromonas naphthalenivorans CJ2 4685266 YP_973202.1 CDS Pnap_4175 NC_008757.1 45476 46177 D KEGG: pol:Bpro_5554 hypothetical protein; hypothetical protein 45476..46177 Polaromonas naphthalenivorans CJ2 4685190 YP_973203.1 CDS Pnap_4176 NC_008757.1 46177 47925 D PFAM: ABC-1 domain protein; KEGG: pol:Bpro_5555 ABC-1; hypothetical protein 46177..47925 Polaromonas naphthalenivorans CJ2 4685178 YP_973204.1 CDS Pnap_4177 NC_008757.1 47922 50582 D PFAM: Glycosyltransferase 28, C-terminal domain; KEGG: pol:Bpro_5556 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase-like; glycosyltransferase family 28 protein 47922..50582 Polaromonas naphthalenivorans CJ2 4685184 YP_973205.1 CDS Pnap_4178 NC_008757.1 50579 51550 D PFAM: Patatin; KEGG: pol:Bpro_5557 patatin; patatin 50579..51550 Polaromonas naphthalenivorans CJ2 4685235 YP_973206.1 CDS Pnap_4179 NC_008757.1 51543 52352 D KEGG: pol:Bpro_5558 hypothetical protein; hypothetical protein 51543..52352 Polaromonas naphthalenivorans CJ2 4685247 YP_973207.1 CDS Pnap_4180 NC_008757.1 52349 53449 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_5559 secretion protein HlyD; RND family efflux transporter MFP subunit 52349..53449 Polaromonas naphthalenivorans CJ2 4685450 YP_973208.1 CDS Pnap_4181 NC_008757.1 53446 56727 D PFAM: acriflavin resistance protein; KEGG: pol:Bpro_5560 acriflavin resistance protein; acriflavin resistance protein 53446..56727 Polaromonas naphthalenivorans CJ2 4685249 YP_973209.1 CDS Pnap_4182 NC_008757.1 56724 58019 D PFAM: outer membrane efflux protein; KEGG: pol:Bpro_5561 outer membrane efflux protein; outer membrane efflux protein 56724..58019 Polaromonas naphthalenivorans CJ2 4685332 YP_973210.1 CDS Pnap_4184 NC_008757.1 58305 59330 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bur:Bcep18194_B1224 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein complement(58305..59330) Polaromonas naphthalenivorans CJ2 4685165 YP_973211.1 CDS Pnap_4185 NC_008757.1 59556 61814 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; fatty acid desaturase; Oxidoreductase FAD-binding domain protein; KEGG: bur:Bcep18194_B1222 fatty acid desaturase; oxidoreductase FAD/NAD(P)-binding subunit 59556..61814 Polaromonas naphthalenivorans CJ2 4685245 YP_973212.1 CDS Pnap_4186 NC_008757.1 61877 63517 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: sil:SPO0190 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 61877..63517 Polaromonas naphthalenivorans CJ2 4685242 YP_973213.1 CDS Pnap_4187 NC_008757.1 63521 65158 D PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPO2045 medium-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 63521..65158 Polaromonas naphthalenivorans CJ2 4685240 YP_973214.1 CDS Pnap_4188 NC_008757.1 65158 66897 D KEGG: ade:Adeh_1143 aldehyde dehydrogenase; aldehyde dehydrogenase 65158..66897 Polaromonas naphthalenivorans CJ2 4685236 YP_973215.1 CDS Pnap_4189 NC_008757.1 66988 67698 D PFAM: OmpW family protein; KEGG: pol:Bpro_5480 OmpW; OmpW family protein 66988..67698 Polaromonas naphthalenivorans CJ2 4685233 YP_973216.1 CDS Pnap_4191 NC_008757.1 68268 69179 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_1336 transcriptional regulator, LysR family; LysR family transcriptional regulator 68268..69179 Polaromonas naphthalenivorans CJ2 4685377 YP_973217.1 CDS Pnap_4192 NC_008757.1 69191 69433 D KEGG: bte:BTH_I0809 hypothetical protein; hypothetical protein 69191..69433 Polaromonas naphthalenivorans CJ2 4685232 YP_973218.1 CDS Pnap_4193 NC_008757.1 69719 71710 D type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG 69719..71710 Polaromonas naphthalenivorans CJ2 4685226 YP_973219.1 CDS Pnap_4194 NC_008757.1 71707 72159 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: rme:Rmet_1549 CopG-like DNA-binding; CopG/DNA-binding domain-containing protein 71707..72159 Polaromonas naphthalenivorans CJ2 4685225 YP_973220.1 CDS Pnap_4195 NC_008757.1 72156 73187 D PFAM: type II secretion system protein E; KEGG: rso:RSc2584 probable conjugal transfer protein TrbB; type II secretion system protein E 72156..73187 Polaromonas naphthalenivorans CJ2 4685223 YP_973221.1 CDS Pnap_4196 NC_008757.1 73184 73543 D PFAM: Conjugal transfer protein TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC; conjugal transfer protein TrbC 73184..73543 Polaromonas naphthalenivorans CJ2 4685221 YP_973222.1 CDS Pnap_4197 NC_008757.1 73540 73824 D KEGG: rme:Rmet_1343 putative conjugal transfer TrbD transmembrane protein; putative conjugal transfer TrbD transmembrane protein 73540..73824 Polaromonas naphthalenivorans CJ2 4685220 YP_973223.1 CDS Pnap_4198 NC_008757.1 73846 76287 D type IV secretion system VirB4 family; conjugal transfer ATPase TrbE 73846..76287 Polaromonas naphthalenivorans CJ2 4685213 YP_973224.1 CDS Pnap_4199 NC_008757.1 76284 77012 D KEGG: rme:Rmet_1554 putative conjugal transfer TrbJ signal peptide protein; conjugal transfer protein TrbJ 76284..77012 Polaromonas naphthalenivorans CJ2 4685211 YP_973225.1 CDS Pnap_4200 NC_008757.1 77023 78396 D type IV secretion VirB6 family; conjugal transfer protein TrbL 77023..78396 Polaromonas naphthalenivorans CJ2 4685205 YP_973226.1 CDS Pnap_4201 NC_008757.1 78409 79113 D PFAM: Conjugal transfer protein; KEGG: rme:Rmet_1348 conjugal transfer protein; conjugal transfer protein TrbF 78409..79113 Polaromonas naphthalenivorans CJ2 4685207 YP_973227.1 CDS Pnap_4202 NC_008757.1 79110 80123 D PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rso:RSc2576 probable conjugal transfer lipoprotein TrbG; conjugal transfer protein TrbG/VirB9/CagX 79110..80123 Polaromonas naphthalenivorans CJ2 4685199 YP_973228.1 CDS Pnap_4203 NC_008757.1 80126 81445 D PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_1559 conjugation TrbI-like protein; conjugation TrbI family protein 80126..81445 Polaromonas naphthalenivorans CJ2 4685195 YP_973229.1 CDS Pnap_4204 NC_008757.1 81442 81711 D KEGG: rso:RSc2574 hypothetical/unknown protein; hypothetical protein 81442..81711 Polaromonas naphthalenivorans CJ2 4685193 YP_973230.1 CDS Pnap_4205 NC_008757.1 82262 82612 R PFAM: protein of unknown function DUF805; KEGG: chu:CHU_1014 possible cytochrome; hypothetical protein complement(82262..82612) Polaromonas naphthalenivorans CJ2 4685192 YP_973231.1 CDS Pnap_4206 NC_008757.1 82654 83067 R hypothetical protein complement(82654..83067) Polaromonas naphthalenivorans CJ2 4685188 YP_973232.1 CDS Pnap_4207 NC_008757.1 83134 83589 R hypothetical protein complement(83134..83589) Polaromonas naphthalenivorans CJ2 4685189 YP_973233.1 CDS Pnap_4208 NC_008757.1 83904 84173 R hypothetical protein complement(83904..84173) Polaromonas naphthalenivorans CJ2 4685182 YP_973234.1 CDS Pnap_4209 NC_008757.1 85400 85678 D hypothetical protein 85400..85678 Polaromonas naphthalenivorans CJ2 4685181 YP_973235.1 CDS Pnap_4210 NC_008757.1 85689 85958 D KEGG: rfr:Rfer_4310 hypothetical protein; hypothetical protein 85689..85958 Polaromonas naphthalenivorans CJ2 4685177 YP_973236.1 CDS Pnap_4211 NC_008757.1 86109 86990 D hypothetical protein 86109..86990 Polaromonas naphthalenivorans CJ2 4685171 YP_973237.1 CDS Pnap_4212 NC_008757.1 87439 87819 D hypothetical protein 87439..87819 Polaromonas naphthalenivorans CJ2 4685173 YP_973238.1 CDS Pnap_4213 NC_008757.1 87892 88443 D hypothetical protein 87892..88443 Polaromonas naphthalenivorans CJ2 4685169 YP_973239.1 CDS Pnap_4214 NC_008757.1 88638 89492 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pol:Bpro_5428 hypothetical protein; phosphoadenosine phosphosulfate reductase 88638..89492 Polaromonas naphthalenivorans CJ2 4685300 YP_973240.1 CDS Pnap_4215 NC_008757.1 90124 91254 D hypothetical protein 90124..91254 Polaromonas naphthalenivorans CJ2 4685271 YP_973241.1 CDS Pnap_4216 NC_008757.1 91321 91683 D hypothetical protein 91321..91683 Polaromonas naphthalenivorans CJ2 4685268 YP_973242.1 CDS Pnap_4217 NC_008757.1 91757 92275 D hypothetical protein 91757..92275 Polaromonas naphthalenivorans CJ2 4685267 YP_973243.1 CDS Pnap_4218 NC_008757.1 92352 92660 D hypothetical protein 92352..92660 Polaromonas naphthalenivorans CJ2 4685264 YP_973244.1 CDS Pnap_4219 NC_008757.1 92721 93107 D hypothetical protein 92721..93107 Polaromonas naphthalenivorans CJ2 4685263 YP_973245.1 CDS Pnap_4220 NC_008757.1 93235 93642 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bpm:BURPS1710b_0084 H-NS histone family protein; histone family protein nucleoid-structuring protein H-NS 93235..93642 Polaromonas naphthalenivorans CJ2 4685261 YP_973246.1 CDS Pnap_4221 NC_008757.1 94256 94705 D KEGG: rme:Rmet_1504 hypothetical protein; hypothetical protein 94256..94705 Polaromonas naphthalenivorans CJ2 4685256 YP_973247.1 CDS Pnap_4222 NC_008757.1 94730 95140 R hypothetical protein complement(94730..95140) Polaromonas naphthalenivorans CJ2 4685254 YP_973248.1 CDS Pnap_4223 NC_008757.1 95172 95870 R hypothetical protein complement(95172..95870) Polaromonas naphthalenivorans CJ2 4685290 YP_973249.1 CDS Pnap_4224 NC_008757.1 96004 96990 D PFAM: type II secretion system protein E; KEGG: rme:Rmet_6302 type II secretion system protein E; type II secretion system protein E 96004..96990 Polaromonas naphthalenivorans CJ2 4685285 YP_973250.1 CDS Pnap_4225 NC_008757.1 96962 97282 D hypothetical protein 96962..97282 Polaromonas naphthalenivorans CJ2 4685251 YP_973251.1 CDS Pnap_4226 NC_008757.1 97293 97607 D hypothetical protein 97293..97607 Polaromonas naphthalenivorans CJ2 4685333 YP_973252.1 CDS Pnap_4227 NC_008757.1 97607 100072 D KEGG: pol:Bpro_5229 type IV secretory pathway VirB4 components-like; Type IV secretory pathway VirB4 components-like protein 97607..100072 Polaromonas naphthalenivorans CJ2 4685293 YP_973253.1 CDS Pnap_4228 NC_008757.1 100075 100788 D KEGG: mlo:mll9607 conjugal transfer protein trbJ; hypothetical protein 100075..100788 Polaromonas naphthalenivorans CJ2 4685276 YP_973254.1 CDS Pnap_4229 NC_008757.1 100795 102018 D KEGG: rme:Rmet_6307 hypothetical protein; hypothetical protein 100795..102018 Polaromonas naphthalenivorans CJ2 4685283 YP_973255.1 CDS Pnap_4230 NC_008757.1 102231 102842 D hypothetical protein 102231..102842 Polaromonas naphthalenivorans CJ2 4685327 YP_973256.1 CDS Pnap_4231 NC_008757.1 102875 103348 D KEGG: bbr:BB3199 putative lipoprotein; putative lipoprotein 102875..103348 Polaromonas naphthalenivorans CJ2 4685274 YP_973257.1 CDS Pnap_4232 NC_008757.1 103411 105033 D KEGG: bbr:BB3198 lipoprotein; lipoprotein 103411..105033 Polaromonas naphthalenivorans CJ2 4685455 YP_973258.1 CDS Pnap_4233 NC_008757.1 105034 106392 D KEGG: bpe:BP1830 hypothetical protein; hypothetical protein 105034..106392 Polaromonas naphthalenivorans CJ2 4685322 YP_973259.1 CDS Pnap_4234 NC_008757.1 106379 107233 D KEGG: tcr:510377.134 mucin-associated surface protein (MASP) Pfam: Prosystemin PROSITE: ALA_RICH; hypothetical protein 106379..107233 Polaromonas naphthalenivorans CJ2 4685277 YP_973260.1 CDS Pnap_4235 NC_008757.1 107238 109205 D PFAM: type II secretion system protein E; KEGG: bbr:BB3195 putative general secretion pathway protein; type II secretion system protein E 107238..109205 Polaromonas naphthalenivorans CJ2 4685282 YP_973261.1 CDS Pnap_4236 NC_008757.1 109205 110419 D KEGG: bpe:BP1833 putative general secretion pathway protein; putative general secretion pathway protein 109205..110419 Polaromonas naphthalenivorans CJ2 4685288 YP_973262.1 CDS Pnap_4237 NC_008757.1 110651 111295 D KEGG: pol:Bpro_5457 type IV secretory pathway component VirB8-like; hypothetical protein 110651..111295 Polaromonas naphthalenivorans CJ2 4685286 YP_973263.1 CDS Pnap_4238 NC_008757.1 111292 112134 D PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rbe:RBE_1012 VirB9; conjugal transfer protein TrbG/VirB9/CagX 111292..112134 Polaromonas naphthalenivorans CJ2 4685334 YP_973264.1 CDS Pnap_4239 NC_008757.1 112141 113439 D PFAM: conjugation TrbI family protein; KEGG: pol:Bpro_5455 conjugation TrbI-like protein; conjugation TrbI family protein 112141..113439 Polaromonas naphthalenivorans CJ2 4685337 YP_973265.1 CDS Pnap_4240 NC_008757.1 113436 113771 D hypothetical protein 113436..113771 Polaromonas naphthalenivorans CJ2 4685331 YP_973266.1 CDS Pnap_4241 NC_008757.1 113838 115505 R KEGG: rme:Rmet_6048 superfamily I DNA and RNA helicases-like protein; superfamily I DNA/RNA helicase-like protein complement(113838..115505) Polaromonas naphthalenivorans CJ2 4685346 YP_973267.1 CDS Pnap_4242 NC_008757.1 115527 115958 R hypothetical protein complement(115527..115958) Polaromonas naphthalenivorans CJ2 4685345 YP_973268.1 CDS Pnap_4243 NC_008757.1 116229 116765 D PFAM: Lytic transglycosylase, catalytic; KEGG: bcn:Bcen_0007 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic 116229..116765 Polaromonas naphthalenivorans CJ2 4685344 YP_973269.1 CDS Pnap_4244 NC_008757.1 117029 118330 R PFAM: initiator RepB protein; KEGG: pol:Bpro_5513 initiator RepB protein; initiator RepB protein complement(117029..118330) Polaromonas naphthalenivorans CJ2 4685351 YP_973270.1 CDS Pnap_4245 NC_008757.1 118850 119311 R hypothetical protein complement(118850..119311) Polaromonas naphthalenivorans CJ2 4685394 YP_973271.1 CDS Pnap_4246 NC_008757.1 120157 120969 D KEGG: bxe:Bxe_C0019 putative transposase; hypothetical protein 120157..120969 Polaromonas naphthalenivorans CJ2 4685376 YP_973272.1 CDS Pnap_4247 NC_008757.1 121145 122119 R TIGRFAM: parB-like partition proteins; KEGG: pol:Bpro_5044 ParB-like partition proteins; parB-like partition proteins complement(121145..122119) Polaromonas naphthalenivorans CJ2 4685265 YP_973273.1 CDS Pnap_4248 NC_008757.1 122119 122787 R KEGG: rfr:Rfer_4285 ATPase involved in chromosome partitioning-like; chromosome partitioning ATPase complement(122119..122787) Polaromonas naphthalenivorans CJ2 4685259 YP_973274.1 CDS Pnap_4249 NC_008757.1 123239 123628 R PFAM: transposase, IS4 family protein; KEGG: ftl:FTL_1926 transposase; transposase, IS4 family protein complement(123239..123628) Polaromonas naphthalenivorans CJ2 4685269 YP_973275.1 CDS Pnap_4250 NC_008757.1 123668 123868 R KEGG: sco:SCP1.214 putative transposase; putative transposase complement(123668..123868) Polaromonas naphthalenivorans CJ2 4685253 YP_973276.1 CDS Pnap_4251 NC_008757.1 124072 125946 R PFAM: phage integrase family protein; KEGG: rso:RS01673 putative integrase/recombinase protein; phage integrase family protein complement(124072..125946) Polaromonas naphthalenivorans CJ2 4685307 YP_973277.1 CDS Pnap_4252 NC_008757.1 126243 126839 R KEGG: rfr:Rfer_4437 hypothetical protein; hypothetical protein complement(126243..126839) Polaromonas naphthalenivorans CJ2 4685168 YP_973278.1 CDS Pnap_4253 NC_008757.1 126975 128513 D PFAM: sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_05030 sigma 54-dependent transcriptional activator; sigma-54 factor interaction domain-containing protein 126975..128513 Polaromonas naphthalenivorans CJ2 4685172 YP_973279.1 CDS Pnap_4254 NC_008757.1 128725 129060 D hypothetical protein 128725..129060 Polaromonas naphthalenivorans CJ2 4685294 YP_973280.1 CDS Pnap_4255 NC_008757.1 129168 129890 D PFAM: von Willebrand factor, type A; KEGG: hpy:HP0428 phage/colicin/tellurite resistance cluster TerY protein; von Willebrand factor, type A 129168..129890 Polaromonas naphthalenivorans CJ2 4685179 YP_973281.1 CDS Pnap_4256 NC_008757.1 130056 130607 D hypothetical protein 130056..130607 Polaromonas naphthalenivorans CJ2 4685183 YP_973282.1 CDS Pnap_4257 NC_008757.1 130614 132041 D PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: hpy:HP0432 protein kinase C-like protein; protein kinase 130614..132041 Polaromonas naphthalenivorans CJ2 4685180 YP_973283.1 CDS Pnap_4258 NC_008757.1 132049 135375 D KEGG: hpy:HP0447 hypothetical protein; superfamily I DNA/RNA helicase 132049..135375 Polaromonas naphthalenivorans CJ2 4685186 YP_973284.1 CDS Pnap_4259 NC_008757.1 135362 136801 D hypothetical protein 135362..136801 Polaromonas naphthalenivorans CJ2 4685194 YP_973285.1 CDS Pnap_4260 NC_008757.1 136931 139267 D KEGG: bat:BAS0873 hypothetical protein; hypothetical protein 136931..139267 Polaromonas naphthalenivorans CJ2 4685191 YP_973286.1 CDS Pnap_4261 NC_008757.1 139264 141159 D hypothetical protein 139264..141159 Polaromonas naphthalenivorans CJ2 4685197 YP_973287.1 CDS Pnap_4262 NC_008757.1 141166 143667 R hypothetical protein complement(141166..143667) Polaromonas naphthalenivorans CJ2 4685202 YP_973288.1 CDS Pnap_4263 NC_008757.1 143664 145226 R hypothetical protein complement(143664..145226) Polaromonas naphthalenivorans CJ2 4685201 YP_973289.1 CDS Pnap_4264 NC_008757.1 145574 149353 R PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pcr:Pcryo_0956 SNF2-related; SNF2-related protein complement(145574..149353) Polaromonas naphthalenivorans CJ2 4685210 YP_973290.1 CDS Pnap_4265 NC_008757.1 149350 151158 R KEGG: pcr:Pcryo_0955 hypothetical protein; hypothetical protein complement(149350..151158) Polaromonas naphthalenivorans CJ2 4685216 YP_973291.1 CDS Pnap_4266 NC_008757.1 151158 151865 R KEGG: pcr:Pcryo_0954 hypothetical protein; hypothetical protein complement(151158..151865) Polaromonas naphthalenivorans CJ2 4685215 YP_973292.1 CDS Pnap_4267 NC_008757.1 151862 154312 R KEGG: xcb:XC_2788 hypothetical protein; hypothetical protein complement(151862..154312) Polaromonas naphthalenivorans CJ2 4685219 YP_973293.1 CDS Pnap_4268 NC_008757.1 155091 156239 R PFAM: UMUC domain protein DNA-repair protein; KEGG: rfr:Rfer_4341 DNA-directed DNA polymerase; DNA-repair protein complement(155091..156239) Polaromonas naphthalenivorans CJ2 4685224 YP_973294.1 CDS Pnap_4269 NC_008757.1 156791 158065 R hypothetical protein complement(156791..158065) Polaromonas naphthalenivorans CJ2 4685222 YP_973295.1 CDS Pnap_4270 NC_008757.1 158334 158705 D KEGG: noc:Noc_0666 hypothetical protein; hypothetical protein 158334..158705 Polaromonas naphthalenivorans CJ2 4685228 YP_973296.1 CDS Pnap_4271 NC_008757.1 158708 161203 D PFAM: Heat shock protein 70; KEGG: noc:Noc_0667 heat shock protein HSP70; heat shock protein 70 158708..161203 Polaromonas naphthalenivorans CJ2 4685231 YP_973297.1 CDS Pnap_4272 NC_008757.1 161207 162655 D PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: noc:Noc_0668 AAA ATPase; ATPase central domain-containing protein 161207..162655 Polaromonas naphthalenivorans CJ2 4685227 YP_973298.1 CDS Pnap_4273 NC_008757.1 162714 164369 D KEGG: noc:Noc_0670 hypothetical protein; hypothetical protein 162714..164369 Polaromonas naphthalenivorans CJ2 4685237 YP_973299.1 CDS Pnap_4275 NC_008757.1 166679 168343 R PFAM: UvrD/REP helicase; KEGG: dar:Daro_2560 UvrD/REP helicase; UvrD/REP helicase complement(166679..168343) Polaromonas naphthalenivorans CJ2 4685355 YP_973300.1 CDS Pnap_4276 NC_008757.1 168340 170277 R PFAM: SMC domain protein; KEGG: dar:Daro_2559 hypothetical protein; Fis family transcriptional regulator complement(168340..170277) Polaromonas naphthalenivorans CJ2 4685238 YP_973301.1 CDS Pnap_4277 NC_008757.1 170793 172820 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO6640 putative ATP-dependent helicase; DEAD/DEAH box helicase domain-containing protein complement(170793..172820) Polaromonas naphthalenivorans CJ2 4685243 YP_973302.1 CDS Pnap_4278 NC_008757.1 172817 174127 R KEGG: hch:HCH_03464 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(172817..174127) Polaromonas naphthalenivorans CJ2 4685248 YP_973303.1 CDS Pnap_4279 NC_008757.1 174124 176850 R PFAM: PglZ domain; KEGG: hch:HCH_03465 hypothetical protein; alkaline phosphatase domain-containing protein complement(174124..176850) Polaromonas naphthalenivorans CJ2 4685246 YP_973304.1 CDS Pnap_4280 NC_008757.1 176847 180569 R KEGG: hch:HCH_03466 probable phage resistance protein; putative phage resistance protein complement(176847..180569) Polaromonas naphthalenivorans CJ2 4685167 YP_973305.1 CDS Pnap_4281 NC_008757.1 180693 181241 R hypothetical protein complement(180693..181241) Polaromonas naphthalenivorans CJ2 4685230 YP_973306.1 CDS Pnap_4282 NC_008757.1 181245 182312 R KEGG: nma:NMA0935 hypothetical protein; hypothetical protein complement(181245..182312) Polaromonas naphthalenivorans CJ2 4685273 YP_973307.1 CDS Pnap_4283 NC_008757.1 182344 186045 R KEGG: bte:BTH_I0114 hypothetical protein; hypothetical protein complement(182344..186045) Polaromonas naphthalenivorans CJ2 4685203 YP_973308.1 CDS Pnap_4284 NC_008757.1 186128 187297 R KEGG: rme:Rmet_2228 hypothetical protein; hypothetical protein complement(186128..187297) Polaromonas naphthalenivorans CJ2 4685275 YP_973309.1 CDS Pnap_4285 NC_008757.1 187488 191771 R PFAM: protein kinase; NERD domain protein; SMART: serine/threonine protein kinase; KEGG: hch:HCH_03471 serine/threonine protein kinase; protein kinase complement(187488..191771) Polaromonas naphthalenivorans CJ2 4685214 YP_973310.1 CDS Pnap_4286 NC_008757.1 191768 191989 R KEGG: pol:Bpro_0373 transcriptional regulator, Cro/CI family; Cro/CI family transcriptional regulator complement(191768..191989) Polaromonas naphthalenivorans CJ2 4685399 YP_973311.1 CDS Pnap_4287 NC_008757.1 192190 192414 D KEGG: mhu:Mhun_2961 protein of unknown function DUF262; hypothetical protein 192190..192414 Polaromonas naphthalenivorans CJ2 4685279 YP_973312.1 CDS Pnap_4288 NC_008757.1 193002 193505 D hypothetical protein 193002..193505 Polaromonas naphthalenivorans CJ2 4685255 YP_973313.1 CDS Pnap_4289 NC_008757.1 193643 194374 R PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; IstB ATP binding domain-containing protein complement(193643..194374) Polaromonas naphthalenivorans CJ2 4685352 YP_973314.1 CDS Pnap_4290 NC_008757.1 194416 195954 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit complement(194416..195954) Polaromonas naphthalenivorans CJ2 4685403 YP_973315.1 CDS Pnap_4291 NC_008757.1 196635 197126 D KEGG: ppu:PP_3916 hypothetical protein; hypothetical protein 196635..197126 Polaromonas naphthalenivorans CJ2 4685335 YP_973316.1 CDS Pnap_4292 NC_008757.1 197439 197918 D hypothetical protein 197439..197918 Polaromonas naphthalenivorans CJ2 4685421 YP_973317.1 CDS Pnap_4293 NC_008757.1 198155 199906 D TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: pol:Bpro_5053 ParB-like partition proteins; parB-like partition proteins 198155..199906 Polaromonas naphthalenivorans CJ2 4685426 YP_973318.1 CDS Pnap_4294 NC_008757.1 200560 200769 D KEGG: rso:RSc1661 hypothetical protein; hypothetical protein 200560..200769 Polaromonas naphthalenivorans CJ2 4685419 YP_973319.1 CDS Pnap_4295 NC_008757.1 200886 202046 D KEGG: pol:Bpro_5065 hypothetical protein; hypothetical protein 200886..202046 Polaromonas naphthalenivorans CJ2 4685458 YP_973320.1 CDS Pnap_4296 NC_008757.1 202049 202846 D KEGG: pol:Bpro_5066 hypothetical protein; hypothetical protein 202049..202846 Polaromonas naphthalenivorans CJ2 4685477 YP_973321.1 CDS Pnap_4297 NC_008757.1 202846 203490 D KEGG: pol:Bpro_5067 hypothetical protein; hypothetical protein 202846..203490 Polaromonas naphthalenivorans CJ2 4685432 YP_973322.1 CDS Pnap_4298 NC_008757.1 203487 204332 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pol:Bpro_5068 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein 203487..204332 Polaromonas naphthalenivorans CJ2 4685206 YP_973323.1 CDS Pnap_4299 NC_008757.1 204426 204968 D hypothetical protein 204426..204968 Polaromonas naphthalenivorans CJ2 4685270 YP_973324.1 CDS Pnap_4300 NC_008757.1 205475 205810 R hypothetical protein complement(205475..205810) Polaromonas naphthalenivorans CJ2 4685404 YP_973325.1 CDS Pnap_4301 NC_008757.1 206036 210985 D KEGG: dar:Daro_2546 helicase, C-terminal; helicase, C-terminal 206036..210985 Polaromonas naphthalenivorans CJ2 4685229 YP_973326.1 CDS Pnap_4302 NC_008757.1 211149 211691 D PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: xcv:XCVd0044 putative secreted protein; hypothetical protein 211149..211691 Polaromonas naphthalenivorans CJ2 4685185 YP_973327.1 CDS Pnap_4303 NC_008757.1 212201 212485 D hypothetical protein 212201..212485 Polaromonas naphthalenivorans CJ2 4685390 YP_973328.1 CDS Pnap_4304 NC_008757.1 212963 213877 D KEGG: dar:Daro_1656 hypothetical protein; hypothetical protein 212963..213877 Polaromonas naphthalenivorans CJ2 4685318 YP_973329.1 CDS Pnap_4305 NC_008757.1 213989 215089 D TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; KEGG: pha:PSHAa0002 DNA polymerase III subunit beta; DNA polymerase III, beta subunit 213989..215089 Polaromonas naphthalenivorans CJ2 4685465 YP_973330.1 CDS Pnap_4306 NC_008757.1 215133 215753 D hypothetical protein 215133..215753 Polaromonas naphthalenivorans CJ2 4685391 YP_973331.1 CDS Pnap_4307 NC_008757.1 216027 217454 D KEGG: dar:Daro_2562 hypothetical protein; hypothetical protein 216027..217454 Polaromonas naphthalenivorans CJ2 4685262 YP_973332.1 CDS Pnap_4308 NC_008757.1 217746 218144 D PFAM: protein of unknown function DUF1044; KEGG: pol:Bpro_0470 protein of unknown function DUF1044; hypothetical protein 217746..218144 Polaromonas naphthalenivorans CJ2 4685308 YP_973333.1 CDS Pnap_4309 NC_008757.1 218164 218451 D KEGG: pol:Bpro_0471 putative transcriptional regulator; putative transcriptional regulator 218164..218451 Polaromonas naphthalenivorans CJ2 4685371 YP_973334.1 CDS Pnap_4310 NC_008757.1 218632 219051 D hypothetical protein 218632..219051 Polaromonas naphthalenivorans CJ2 4685405 YP_973335.1 CDS Pnap_4311 NC_008757.1 219542 220165 R KEGG: tcr:510243.50 adenylate kinase; hypothetical protein complement(219542..220165) Polaromonas naphthalenivorans CJ2 4685311 YP_973336.1 CDS Pnap_4312 NC_008757.1 220172 220465 R hypothetical protein complement(220172..220465) Polaromonas naphthalenivorans CJ2 4685457 YP_973337.1 CDS Pnap_4313 NC_008757.1 220721 221350 R hypothetical protein complement(220721..221350) Polaromonas naphthalenivorans CJ2 4685328 YP_973338.1 CDS Pnap_4314 NC_008757.1 221663 222580 D hypothetical protein 221663..222580 Polaromonas naphthalenivorans CJ2 4685319 YP_973339.1 CDS Pnap_4315 NC_008757.1 222675 224534 D PFAM: UvrD/REP helicase; KEGG: rme:Rmet_6314 UvrD/REP helicase; UvrD/REP helicase 222675..224534 Polaromonas naphthalenivorans CJ2 4685336 YP_973340.1 CDS Pnap_4316 NC_008757.1 224590 225126 R hypothetical protein complement(224590..225126) Polaromonas naphthalenivorans CJ2 4685314 YP_973341.1 CDS Pnap_4317 NC_008757.1 226289 227317 D KEGG: eba:p1B250 hypothetical protein; hypothetical protein 226289..227317 Polaromonas naphthalenivorans CJ2 4685341 YP_973342.1 CDS Pnap_4318 NC_008757.1 227441 228844 D KEGG: dar:Daro_2561 DNA repair exonuclease-like protein; DNA repair exonuclease-like protein 227441..228844 Polaromonas naphthalenivorans CJ2 4685312 YP_973343.1 CDS Pnap_4319 NC_008757.1 229164 229517 R hypothetical protein complement(229164..229517) Polaromonas naphthalenivorans CJ2 4685323 YP_973344.1 CDS Pnap_4320 NC_008757.1 229820 232252 D KEGG: dar:Daro_2237 putative ATPase involved in DNA repair; putative DNA repair ATPase 229820..232252 Polaromonas naphthalenivorans CJ2 4685363 YP_973345.1 CDS Pnap_4321 NC_008757.1 232375 232953 D hypothetical protein 232375..232953 Polaromonas naphthalenivorans CJ2 4685316 YP_973346.1 CDS Pnap_4322 NC_008757.1 233190 234113 D hypothetical protein 233190..234113 Polaromonas naphthalenivorans CJ2 4685350 YP_973347.1 CDS Pnap_4323 NC_008757.1 234180 234824 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pol:Bpro_4565 single-strand binding protein; single-strand binding protein 234180..234824 Polaromonas naphthalenivorans CJ2 4685380 YP_973348.1 CDS Pnap_4324 NC_008757.1 235004 236029 D KEGG: dar:Daro_2291 hypothetical protein; hypothetical protein 235004..236029 Polaromonas naphthalenivorans CJ2 4685353 YP_973349.1 CDS Pnap_4325 NC_008757.1 236173 236547 R hypothetical protein complement(236173..236547) Polaromonas naphthalenivorans CJ2 4685367 YP_973350.1 CDS Pnap_4326 NC_008757.1 236732 237274 R hypothetical protein complement(236732..237274) Polaromonas naphthalenivorans CJ2 4685398 YP_973351.1 CDS Pnap_4327 NC_008757.1 237271 237645 R hypothetical protein complement(237271..237645) Polaromonas naphthalenivorans CJ2 4685360 YP_973352.1 CDS Pnap_4328 NC_008757.1 237678 238712 R hypothetical protein complement(237678..238712) Polaromonas naphthalenivorans CJ2 4685393 YP_973353.1 CDS Pnap_4329 NC_008757.1 238888 240114 D hypothetical protein 238888..240114 Polaromonas naphthalenivorans CJ2 4685301 YP_973354.1 CDS Pnap_4330 NC_008757.1 240107 242020 D KEGG: rme:Rmet_6309 hypothetical protein; hypothetical protein 240107..242020 Polaromonas naphthalenivorans CJ2 4685382 YP_973355.1 CDS Pnap_4331 NC_008757.1 242315 243709 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5481 HNH endonuclease; HNH endonuclease 242315..243709 Polaromonas naphthalenivorans CJ2 4685400 YP_973356.1 CDS Pnap_4332 NC_008757.1 243709 244344 D KEGG: rme:Rmet_6312 hypothetical protein; hypothetical protein 243709..244344 Polaromonas naphthalenivorans CJ2 4685441 YP_973357.1 CDS Pnap_4333 NC_008757.1 244510 245103 D KEGG: bbr:BB3193 putative fimbrial protein; putative fimbrial protein 244510..245103 Polaromonas naphthalenivorans CJ2 4685388 YP_973358.1 CDS Pnap_4334 NC_008757.1 245524 246882 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5402 HNH endonuclease; HNH endonuclease 245524..246882 Polaromonas naphthalenivorans CJ2 4685431 YP_973359.1 CDS Pnap_4335 NC_008757.1 247082 248665 D KEGG: rfr:Rfer_4492 methylation; hypothetical protein 247082..248665 Polaromonas naphthalenivorans CJ2 4685461 YP_973360.1 CDS Pnap_4336 NC_008757.1 248837 249895 R PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related; Allergen V5/Tpx-1 family protein complement(248837..249895) Polaromonas naphthalenivorans CJ2 4685412 YP_973361.1 CDS Pnap_4337 NC_008757.1 250087 250824 D hypothetical protein 250087..250824 Polaromonas naphthalenivorans CJ2 4685443 YP_973362.1 CDS Pnap_4338 NC_008757.1 250999 252381 R PFAM: HipA domain protein; KEGG: bpa:BPP0645 hypothetical protein; HipA domain-containing protein complement(250999..252381) Polaromonas naphthalenivorans CJ2 4685472 YP_973363.1 CDS Pnap_4339 NC_008757.1 252381 252665 R KEGG: rfr:Rfer_3066 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(252381..252665) Polaromonas naphthalenivorans CJ2 4685435 YP_973364.1 CDS Pnap_4340 NC_008757.1 253051 254166 D KEGG: reu:Reut_C6002 hypothetical protein; hypothetical protein 253051..254166 Polaromonas naphthalenivorans CJ2 4685463 YP_973365.1 CDS Pnap_4341 NC_008757.1 254244 255059 R KEGG: cne:CNE03390 hypothetical protein; hypothetical protein complement(254244..255059) Polaromonas naphthalenivorans CJ2 4685436 YP_973366.1 CDS Pnap_4342 NC_008757.1 255063 255548 R hypothetical protein complement(255063..255548) Polaromonas naphthalenivorans CJ2 4685446 YP_973367.1 CDS Pnap_4343 NC_008757.1 255658 256005 R hypothetical protein complement(255658..256005) Polaromonas naphthalenivorans CJ2 4685470 YP_973368.1 CDS Pnap_4344 NC_008757.1 256010 256258 R hypothetical protein complement(256010..256258) Polaromonas naphthalenivorans CJ2 4685381 YP_973369.1 CDS Pnap_4345 NC_008757.1 256402 257448 R KEGG: dar:Daro_2217 hypothetical protein; hypothetical protein complement(256402..257448) Polaromonas naphthalenivorans CJ2 4685464 YP_973370.1 CDS Pnap_4346 NC_008757.1 257516 258163 R hypothetical protein complement(257516..258163) Polaromonas naphthalenivorans CJ2 4685408 YP_973371.1 CDS Pnap_4347 NC_008757.1 258301 258582 D hypothetical protein 258301..258582 Polaromonas naphthalenivorans CJ2 4685303 YP_973372.1 CDS Pnap_4348 NC_008757.1 258965 259210 D hypothetical protein 258965..259210 Polaromonas naphthalenivorans CJ2 4685480 YP_973373.1 CDS Pnap_4349 NC_008757.1 259676 260965 D PFAM: phage integrase family protein; KEGG: dar:Daro_2218 hypothetical protein; phage integrase family protein 259676..260965 Polaromonas naphthalenivorans CJ2 4685373 YP_973374.1 CDS Pnap_4350 NC_008757.1 261131 262006 D PFAM: AntA/AntB antirepressor domain protein; KEGG: sbo:SBO_3650 putative anti-repressor protein; AntA/AntB antirepressor domain-containing protein 261131..262006 Polaromonas naphthalenivorans CJ2 4685209 YP_973375.1 CDS Pnap_4351 NC_008757.1 262111 262665 R KEGG: aba:Acid345_1191 hypothetical protein; hypothetical protein complement(262111..262665) Polaromonas naphthalenivorans CJ2 4685401 YP_973376.1 CDS Pnap_4352 NC_008757.1 262656 263072 R KEGG: xcv:XCVd0119 hypothetical protein; hypothetical protein complement(262656..263072) Polaromonas naphthalenivorans CJ2 4685196 YP_973377.1 CDS Pnap_4354 NC_008757.1 263442 264428 R KEGG: pol:Bpro_5019 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(263442..264428) Polaromonas naphthalenivorans CJ2 4685395 YP_973378.1 CDS Pnap_4356 NC_008757.1 266362 266949 D PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4045 transcriptional regulator, LuxR family; response regulator receiver protein 266362..266949 Polaromonas naphthalenivorans CJ2 4685442 YP_973379.1 CDS Pnap_4357 NC_008757.1 267222 267914 R KEGG: xac:XAC3949 hypothetical protein; hypothetical protein complement(267222..267914) Polaromonas naphthalenivorans CJ2 4685204 YP_973380.1 CDS Pnap_4358 NC_008757.1 267920 268783 R KEGG: bxe:Bxe_C0677 hypothetical protein; hypothetical protein complement(267920..268783) Polaromonas naphthalenivorans CJ2 4685299 YP_973381.1 CDS Pnap_4359 NC_008757.1 268848 271103 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: xac:XAC3952 hypothetical protein; UBA/THIF-type NAD/FAD binding protein complement(268848..271103) Polaromonas naphthalenivorans CJ2 4685198 YP_973382.1 CDS Pnap_4360 NC_008757.1 271103 272257 R KEGG: gox:GOX2517 hypothetical protein; hypothetical protein complement(271103..272257) Polaromonas naphthalenivorans CJ2 4685278 YP_973383.1 CDS Pnap_4361 NC_008757.1 272353 272895 R KEGG: bxe:Bxe_B0131 putative transposase; hypothetical protein complement(272353..272895) Polaromonas naphthalenivorans CJ2 4685448 YP_973384.1 CDS Pnap_4362 NC_008757.1 272942 273985 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: rfr:Rfer_2266 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 272942..273985 Polaromonas naphthalenivorans CJ2 4685212 YP_973385.1 CDS Pnap_4363 NC_008757.1 274270 274563 R PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911; transposase IS3/IS911 family protein complement(274270..274563) Polaromonas naphthalenivorans CJ2 4685166 YP_973386.1 CDS Pnap_4364 NC_008757.1 274796 275470 D KEGG: reu:Reut_D6443 hypothetical protein; hypothetical protein 274796..275470 Polaromonas naphthalenivorans CJ2 4685315 YP_973387.1 CDS Pnap_4365 NC_008757.1 275467 275709 D hypothetical protein 275467..275709 Polaromonas naphthalenivorans CJ2 4685291 YP_973388.1 CDS Pnap_4366 NC_008757.1 275723 276046 R hypothetical protein complement(275723..276046) Polaromonas naphthalenivorans CJ2 4685383 YP_973389.1 CDS Pnap_4369 NC_008757.1 277324 277776 R KEGG: rfr:Rfer_4341 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(277324..277776) Polaromonas naphthalenivorans CJ2 4685325 YP_973390.1 CDS Pnap_4370 NC_008757.1 277790 278713 R KEGG: rme:Rmet_6035 hypothetical protein; hypothetical protein complement(277790..278713) Polaromonas naphthalenivorans CJ2 4685320 YP_973391.1 CDS Pnap_4371 NC_008757.1 278710 279378 R KEGG: rso:RS05227 hypothetical protein; hypothetical protein complement(278710..279378) Polaromonas naphthalenivorans CJ2 4685378 YP_973392.1 CDS Pnap_4372 NC_008757.1 279764 280444 R hypothetical protein complement(279764..280444) Polaromonas naphthalenivorans CJ2 4685413 YP_973393.1 CDS Pnap_4373 NC_008757.1 280602 280955 D KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 280602..280955 Polaromonas naphthalenivorans CJ2 4685478 YP_973394.1 CDS Pnap_4374 NC_008757.1 280963 281829 D PFAM: Endonuclease I; KEGG: cvi:CV1988 deoxyribonuclease I; deoxyribonuclease I 280963..281829 Polaromonas naphthalenivorans CJ2 4685389 YP_973395.1 CDS Pnap_4375 NC_008757.1 281934 282941 R hypothetical protein complement(281934..282941) Polaromonas naphthalenivorans CJ2 4685295 YP_973396.1 CDS Pnap_4376 NC_008757.1 282997 283458 R hypothetical protein complement(282997..283458) Polaromonas naphthalenivorans CJ2 4685359 YP_973397.1 CDS Pnap_4377 NC_008757.1 283498 284193 R KEGG: bxe:Bxe_B0034 hypothetical protein; hypothetical protein complement(283498..284193) Polaromonas naphthalenivorans CJ2 4685326 YP_973398.1 CDS Pnap_4378 NC_008757.1 284190 287387 R PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0035 putative phage integrase; phage integrase family protein complement(284190..287387) Polaromonas naphthalenivorans CJ2 4685368 YP_973399.1 CDS Pnap_4379 NC_008757.1 287384 288706 R PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0036 hypothetical protein; phage integrase family protein complement(287384..288706) Polaromonas naphthalenivorans CJ2 4685310 YP_973400.1 CDS Pnap_4380 NC_008757.1 288997 289566 D PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 288997..289566 Polaromonas naphthalenivorans CJ2 4685459 YP_973401.1 CDS Pnap_4381 NC_008757.1 289579 289833 D KEGG: pol:Bpro_5414 hypothetical protein; hypothetical protein 289579..289833 Polaromonas naphthalenivorans CJ2 4685297 YP_973402.1 CDS Pnap_4382 NC_008757.1 290219 291574 D KEGG: eba:ebA2494 hypothetical protein; hypothetical protein 290219..291574 Polaromonas naphthalenivorans CJ2 4685292 YP_973403.1 CDS Pnap_4383 NC_008757.1 291753 292514 D KEGG: bxe:Bxe_A1797 hypothetical protein; hypothetical protein 291753..292514 Polaromonas naphthalenivorans CJ2 4685284 YP_973404.1 CDS Pnap_4384 NC_008757.1 292514 296014 D PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rpd:RPD_3630 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein 292514..296014 Polaromonas naphthalenivorans CJ2 4685287 YP_973405.1 CDS Pnap_4385 NC_008757.1 296587 298446 R KEGG: ana:alr4702 unknown protein; hypothetical protein complement(296587..298446) Polaromonas naphthalenivorans CJ2 4685281 YP_973406.1 CDS Pnap_4386 NC_008757.1 298751 299263 R hypothetical protein complement(298751..299263) Polaromonas naphthalenivorans CJ2 4685260 YP_973407.1 CDS Pnap_4387 NC_008757.1 299906 301585 D hypothetical protein 299906..301585 Polaromonas naphthalenivorans CJ2 4685250 YP_973408.1 CDS Pnap_4388 NC_008757.1 301600 304725 D PFAM: SMC domain protein; KEGG: ani:AN3906.2 hypothetical protein; SMC domain-containing protein 301600..304725 Polaromonas naphthalenivorans CJ2 4685170 YP_973409.1 CDS Pnap_4389 NC_008757.1 305289 306959 R hypothetical protein complement(305289..306959) Polaromonas naphthalenivorans CJ2 4685174 YP_973410.1 CDS Pnap_4390 NC_008757.1 306991 307341 D hypothetical protein 306991..307341 Polaromonas naphthalenivorans CJ2 4685200 YP_973411.1 CDS Pnap_4391 NC_008757.1 307699 309651 D KEGG: hypothetical protein; hypothetical protein 307699..309651 Polaromonas naphthalenivorans CJ2 4685305 YP_973412.1 CDS Pnap_4392 NC_008757.1 309664 310890 D KEGG: mcp:MCAP_0861 hypothetical protein; hypothetical protein 309664..310890 Polaromonas naphthalenivorans CJ2 4685342 YP_973413.1 CDS Pnap_4393 NC_008757.1 310877 311263 D hypothetical protein 310877..311263 Polaromonas naphthalenivorans CJ2 4685329 YP_973414.1 CDS Pnap_4394 NC_008757.1 311264 313021 D KEGG: mka:MK0070 superfamily I DNA/RNA helicase; superfamily I DNA/RNA helicase 311264..313021 Polaromonas naphthalenivorans CJ2 4685358 YP_973415.1 CDS Pnap_4395 NC_008757.1 313388 313828 R KEGG: aci:ACIAD2665 hypothetical protein; hypothetical protein complement(313388..313828) Polaromonas naphthalenivorans CJ2 4685385 YP_973416.1 CDS Pnap_4396 NC_008757.1 314014 315552 D PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit 314014..315552 Polaromonas naphthalenivorans CJ2 4685418 YP_973417.1 CDS Pnap_4397 NC_008757.1 315594 316325 D PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; IstB ATP binding domain-containing protein 315594..316325 Polaromonas naphthalenivorans CJ2 4685479 YP_973418.1 CDS Pnap_4398 NC_008757.1 316591 317220 R KEGG: sma:SAV6022 putative dihydrolipoamide S-succinyltransferase; hypothetical protein complement(316591..317220) Polaromonas naphthalenivorans CJ2 4685476 YP_973419.1 CDS Pnap_4399 NC_008757.1 317593 318579 R KEGG: rfr:Rfer_4294 hypothetical protein; hypothetical protein complement(317593..318579) Polaromonas naphthalenivorans CJ2 4685475 YP_973420.1 CDS Pnap_4400 NC_008757.1 318941 319195 R hypothetical protein complement(318941..319195) Polaromonas naphthalenivorans CJ2 4685469 YP_973421.1 CDS Pnap_4401 NC_008757.1 320087 321268 R KEGG: rme:Rmet_2228 hypothetical protein; hypothetical protein complement(320087..321268) Polaromonas naphthalenivorans CJ2 4685468 YP_973422.1 CDS Pnap_4402 NC_008757.1 321428 322165 R KEGG: rfr:Rfer_4484 hypothetical protein; hypothetical protein complement(321428..322165) Polaromonas naphthalenivorans CJ2 4685466 YP_973423.1 CDS Pnap_4403 NC_008757.1 322286 322558 R hypothetical protein complement(322286..322558) Polaromonas naphthalenivorans CJ2 4685456 YP_973424.1 CDS Pnap_4404 NC_008757.1 322574 323155 R hypothetical protein complement(322574..323155) Polaromonas naphthalenivorans CJ2 4685451 YP_973425.1 CDS Pnap_4405 NC_008757.1 323214 324647 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5402 HNH endonuclease; HNH endonuclease complement(323214..324647) Polaromonas naphthalenivorans CJ2 4685454 YP_973426.1 CDS Pnap_4406 NC_008757.1 325225 325935 R KEGG: xfa:XF1762 hypothetical protein; hypothetical protein complement(325225..325935) Polaromonas naphthalenivorans CJ2 4685440 YP_973427.1 CDS Pnap_4407 NC_008757.1 325953 326225 R hypothetical protein complement(325953..326225) Polaromonas naphthalenivorans CJ2 4685438 YP_973428.1 CDS Pnap_4408 NC_008757.1 326471 327529 D PFAM: transposase, IS4 family protein; KEGG: lpf:lpl2868 hypothetical protein; transposase, IS4 family protein 326471..327529 Polaromonas naphthalenivorans CJ2 4685425 YP_973429.1 CDS Pnap_4409 NC_008757.1 327773 328357 R KEGG: eba:p1B349 hypothetical protein; hypothetical protein complement(327773..328357) Polaromonas naphthalenivorans CJ2 4685423 YP_973430.1 CDS Pnap_4410 NC_008757.1 328587 328874 R KEGG: rfr:Rfer_4448 hypothetical protein; hypothetical protein complement(328587..328874) Polaromonas naphthalenivorans CJ2 4685410 YP_973431.1 CDS Pnap_4411 NC_008757.1 329146 329403 R hypothetical protein complement(329146..329403) Polaromonas naphthalenivorans CJ2 4685407 YP_973432.1 CDS Pnap_4412 NC_008757.1 329417 329725 R KEGG: pol:Bpro_5393 hypothetical protein; hypothetical protein complement(329417..329725) Polaromonas naphthalenivorans CJ2 4685406 YP_973433.1 CDS Pnap_4413 NC_008757.1 329694 330395 R hypothetical protein complement(329694..330395) Polaromonas naphthalenivorans CJ2 4685392 YP_973434.1 CDS Pnap_4414 NC_008757.1 330411 330653 R hypothetical protein complement(330411..330653) Polaromonas naphthalenivorans CJ2 4685386 YP_973435.1 CDS Pnap_4415 NC_008757.1 331284 331571 R hypothetical protein complement(331284..331571) Polaromonas naphthalenivorans CJ2 4685384 YP_973436.1 CDS Pnap_4416 NC_008757.1 331624 331845 D hypothetical protein 331624..331845 Polaromonas naphthalenivorans CJ2 4685379 YP_973437.1 CDS Pnap_4417 NC_008757.1 331889 332182 R hypothetical protein complement(331889..332182) Polaromonas naphthalenivorans CJ2 4685369 YP_973438.1 CDS Pnap_4418 NC_008757.1 332416 332736 R hypothetical protein complement(332416..332736) Polaromonas naphthalenivorans CJ2 4685374 YP_973439.1 CDS Pnap_4419 NC_008757.1 332760 333041 R KEGG: pol:Bpro_5379 hypothetical protein; hypothetical protein complement(332760..333041) Polaromonas naphthalenivorans CJ2 4685356 YP_973440.1 CDS Pnap_4420 NC_008757.1 333041 333364 R hypothetical protein complement(333041..333364) Polaromonas naphthalenivorans CJ2 4685357 YP_973441.1 CDS Pnap_4421 NC_008757.1 333381 333671 R hypothetical protein complement(333381..333671) Polaromonas naphthalenivorans CJ2 4685338 YP_973442.1 CDS Pnap_4422 NC_008757.1 333813 334214 R hypothetical protein complement(333813..334214) Polaromonas naphthalenivorans CJ2 4685340 YP_973443.1 CDS Pnap_4423 NC_008757.1 334304 335527 R PFAM: filamentation induced by cAMP protein Fic; KEGG: pol:Bpro_0014 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic complement(334304..335527) Polaromonas naphthalenivorans CJ2 4685339 YP_973444.1 CDS Pnap_4425 NC_008757.1 337056 337331 D KEGG: bxe:Bxe_A4409 two component transcriptional regulator, fis family; response regulator receiver protein 337056..337331 Polaromonas naphthalenivorans CJ2 4685164 YP_973445.1 CDS Pnap_4426 NC_008757.1 337441 337902 R hypothetical protein complement(337441..337902) Polaromonas naphthalenivorans CJ2 4685306 YP_973446.1 CDS Pnap_4427 NC_008757.1 337915 338196 R hypothetical protein complement(337915..338196) Polaromonas naphthalenivorans CJ2 4685317 YP_973447.1 CDS Pnap_4428 NC_008757.1 338216 338539 R hypothetical protein complement(338216..338539) Polaromonas naphthalenivorans CJ2 4685313 YP_973448.1 CDS Pnap_4429 NC_008757.1 338536 339147 R hypothetical protein complement(338536..339147) Polaromonas naphthalenivorans CJ2 4685309 YP_973449.1 CDS Pnap_4430 NC_008757.1 339167 340312 R KEGG: pol:Bpro_5391 hypothetical protein; hypothetical protein complement(339167..340312) Polaromonas naphthalenivorans CJ2 4685296 YP_973450.1 CDS Pnap_4431 NC_008757.1 340322 341386 R KEGG: pol:Bpro_5390 phage integrase; phage integrase complement(340322..341386) Polaromonas naphthalenivorans CJ2 4685302 YP_973451.1 CDS Pnap_4432 NC_008757.1 341958 343025 R KEGG: pol:Bpro_5076 hypothetical protein; hypothetical protein complement(341958..343025) Polaromonas naphthalenivorans CJ2 4685375 YP_973452.1 CDS Pnap_4433 NC_008757.1 343022 343594 R KEGG: pha:PSHAb0292 putative HNH endonuclease; hypothetical protein complement(343022..343594) Polaromonas naphthalenivorans CJ2 4685364 YP_973453.1 CDS Pnap_4434 NC_008757.1 343636 344595 R PFAM: transposase, IS4 family protein; KEGG: bte:BTH_II0087 transposase; transposase, IS4 family protein complement(343636..344595) Polaromonas naphthalenivorans CJ2 4685437 YP_973454.1 CDS Pnap_4435 NC_008757.1 344685 344867 D KEGG: gox:GOX2701 DNA integration/recombination/invertion protein; DNA integration/recombination/invertion protein 344685..344867 Polaromonas naphthalenivorans CJ2 4685409 YP_973455.1 CDS Pnap_4436 NC_008757.1 344981 345916 R PFAM: DNA/RNA non-specific endonuclease; KEGG: psp:PSPPH_2948 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease complement(344981..345916) Polaromonas naphthalenivorans CJ2 4685361 YP_973456.1 CDS Pnap_4437 NC_008757.1 345938 348892 R KEGG: rpe:RPE_4640 hypothetical protein; hypothetical protein complement(345938..348892) Polaromonas naphthalenivorans CJ2 4685447 YP_973457.1 CDS Pnap_4438 NC_008757.1 348889 350694 R hypothetical protein complement(348889..350694) Polaromonas naphthalenivorans CJ2 4685321 YP_973458.1 CDS Pnap_4439 NC_008757.1 350694 353246 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: rpe:RPE_4642 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(350694..353246) Polaromonas naphthalenivorans CJ2 4685362 YP_973459.1 CDS Pnap_4440 NC_008758.1 402 641 D hypothetical protein 402..641 Polaromonas naphthalenivorans CJ2 4685481 YP_973460.1 CDS Pnap_4441 NC_008758.1 850 2157 D KEGG: hypothetical protein; hypothetical protein 850..2157 Polaromonas naphthalenivorans CJ2 4685648 YP_973461.1 CDS Pnap_4442 NC_008758.1 2160 2741 D KEGG: pfl:PFL_5240 hypothetical protein; hypothetical protein 2160..2741 Polaromonas naphthalenivorans CJ2 4685649 YP_973462.1 CDS Pnap_4443 NC_008758.1 2738 5578 D KEGG: pha:PSHAa1245 hypothetical protein; hypothetical protein 2738..5578 Polaromonas naphthalenivorans CJ2 4685650 YP_973463.1 CDS Pnap_4444 NC_008758.1 5575 6525 D hypothetical protein 5575..6525 Polaromonas naphthalenivorans CJ2 4685651 YP_973464.1 CDS Pnap_4445 NC_008758.1 6606 6926 R hypothetical protein complement(6606..6926) Polaromonas naphthalenivorans CJ2 4685642 YP_973465.1 CDS Pnap_4446 NC_008758.1 7274 8443 D hypothetical protein 7274..8443 Polaromonas naphthalenivorans CJ2 4685643 YP_973466.1 CDS Pnap_4447 NC_008758.1 8927 9319 D PFAM: transposase IS3/IS911 family protein; KEGG: hypothetical protein; transposase IS3/IS911 family protein 8927..9319 Polaromonas naphthalenivorans CJ2 4685640 YP_973467.1 CDS Pnap_4448 NC_008758.1 9316 9657 D PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_3060 IS66 Orf2 like; IS66 Orf2 family protein 9316..9657 Polaromonas naphthalenivorans CJ2 4685641 YP_973468.1 CDS Pnap_4449 NC_008758.1 9739 11325 D PFAM: transposase IS66; KEGG: bxe:Bxe_A2416 transposase ISPpu14 orf3 like, IS66 family; transposase IS66 9739..11325 Polaromonas naphthalenivorans CJ2 4685644 YP_973469.1 CDS Pnap_4451 NC_008758.1 12108 12353 R KEGG: bxe:Bxe_B1865 transposase IS66 family; hypothetical protein complement(12108..12353) Polaromonas naphthalenivorans CJ2 4685486 YP_973470.1 CDS Pnap_4452 NC_008758.1 12777 12968 D TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: bms:BRA0379 DNA-damage-inducible protein J, putative; addiction module antitoxin 12777..12968 Polaromonas naphthalenivorans CJ2 4685646 YP_973471.1 CDS Pnap_4453 NC_008758.1 13006 13941 D KEGG: bms:BRA0378 hypothetical protein; hypothetical protein 13006..13941 Polaromonas naphthalenivorans CJ2 4685647 YP_973472.1 CDS Pnap_4454 NC_008758.1 13938 14189 D KEGG: tfu:Tfu_0717 hypothetical protein; hypothetical protein 13938..14189 Polaromonas naphthalenivorans CJ2 4685635 YP_973473.1 CDS Pnap_4455 NC_008758.1 14186 15907 D KEGG: bms:BRA0377 hypothetical protein; hypothetical protein 14186..15907 Polaromonas naphthalenivorans CJ2 4685636 YP_973474.1 CDS Pnap_4456 NC_008758.1 16794 17612 R hypothetical protein complement(16794..17612) Polaromonas naphthalenivorans CJ2 4685633 YP_973475.1 CDS Pnap_4457 NC_008758.1 18089 18520 D KEGG: hdu:HD0159 hypothetical protein; hypothetical protein 18089..18520 Polaromonas naphthalenivorans CJ2 4685634 YP_973476.1 CDS Pnap_4458 NC_008758.1 18685 19140 D hypothetical protein 18685..19140 Polaromonas naphthalenivorans CJ2 4685637 YP_973477.1 CDS Pnap_4459 NC_008758.1 19312 19848 D hypothetical protein 19312..19848 Polaromonas naphthalenivorans CJ2 4685638 YP_973478.1 CDS Pnap_4460 NC_008758.1 20136 20393 D hypothetical protein 20136..20393 Polaromonas naphthalenivorans CJ2 4685639 YP_973479.1 CDS Pnap_4461 NC_008758.1 21293 22660 D hypothetical protein 21293..22660 Polaromonas naphthalenivorans CJ2 4685627 YP_973480.1 CDS Pnap_4462 NC_008758.1 23343 23999 D KEGG: spj:MGAS2096_Spy0566 hypothetical protein; hypothetical protein 23343..23999 Polaromonas naphthalenivorans CJ2 4685628 YP_973481.1 CDS Pnap_4463 NC_008758.1 24543 25442 D hypothetical protein 24543..25442 Polaromonas naphthalenivorans CJ2 4685625 YP_973482.1 CDS Pnap_4464 NC_008758.1 25439 25990 D hypothetical protein 25439..25990 Polaromonas naphthalenivorans CJ2 4685626 YP_973483.1 CDS Pnap_4465 NC_008758.1 25984 26301 D hypothetical protein 25984..26301 Polaromonas naphthalenivorans CJ2 4685629 YP_973484.1 CDS Pnap_4466 NC_008758.1 26298 26645 D hypothetical protein 26298..26645 Polaromonas naphthalenivorans CJ2 4685630 YP_973485.1 CDS Pnap_4467 NC_008758.1 26973 27188 D hypothetical protein 26973..27188 Polaromonas naphthalenivorans CJ2 4685631 YP_973486.1 CDS Pnap_4468 NC_008758.1 28632 29723 R TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: reu:Reut_D6444 ParB-like partition protein; parB-like partition proteins complement(28632..29723) Polaromonas naphthalenivorans CJ2 4685632 YP_973487.1 CDS Pnap_4469 NC_008758.1 30096 31088 D KEGG: rfr:Rfer_2033 helicase C2; Rad3-related DNA helicases-like protein 30096..31088 Polaromonas naphthalenivorans CJ2 4685621 YP_973488.1 CDS Pnap_4470 NC_008758.1 31163 32176 R KEGG: pol:Bpro_5045 TrfA; hypothetical protein complement(31163..32176) Polaromonas naphthalenivorans CJ2 4685622 YP_973489.1 CDS Pnap_4471 NC_008758.1 33169 34173 R TIGRFAM: parB-like partition proteins; SMART: ParB domain protein nuclease; KEGG: rme:Rmet_5820 ParB-like partition proteins; parB-like partition proteins complement(33169..34173) Polaromonas naphthalenivorans CJ2 4685619 YP_973490.1 CDS Pnap_4472 NC_008758.1 34170 34868 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_5515 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(34170..34868) Polaromonas naphthalenivorans CJ2 4685620 YP_973491.1 CDS Pnap_4473 NC_008758.1 36177 38006 R PFAM: phage integrase family protein; KEGG: rme:Rmet_6086 phage integrase; phage integrase family protein complement(36177..38006) Polaromonas naphthalenivorans CJ2 4685623 YP_973492.1 CDS Pnap_4475 NC_008758.1 39859 41004 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: nmu:Nmul_A0832 histidine kinase; histidine kinase complement(39859..41004) Polaromonas naphthalenivorans CJ2 4685484 YP_973493.1 CDS Pnap_4476 NC_008758.1 41278 41568 R hypothetical protein complement(41278..41568) Polaromonas naphthalenivorans CJ2 4685613 YP_973494.1 CDS Pnap_4479 NC_008758.1 43641 46463 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_1191 ATPase, E1-E2 type; P-type HAD superfamily ATPase complement(43641..46463) Polaromonas naphthalenivorans CJ2 4685487 YP_973495.1 CDS Pnap_4480 NC_008758.1 46580 46798 R KEGG: rpc:RPC_4057 putative transposase; putative transposase complement(46580..46798) Polaromonas naphthalenivorans CJ2 4685611 YP_973496.1 CDS Pnap_4481 NC_008758.1 46898 48223 D KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 46898..48223 Polaromonas naphthalenivorans CJ2 4685612 YP_973497.1 CDS Pnap_4482 NC_008758.1 48225 48509 R KEGG: spn:SP0811 transposase family protein; transposase family protein complement(48225..48509) Polaromonas naphthalenivorans CJ2 4685615 YP_973498.1 CDS Pnap_4483 NC_008758.1 48509 49057 R KEGG: pol:Bpro_3862 hypothetical protein; hypothetical protein complement(48509..49057) Polaromonas naphthalenivorans CJ2 4685616 YP_973499.1 CDS Pnap_4484 NC_008758.1 49497 49931 D PFAM: transposase, IS4 family protein; KEGG: rme:Rmet_4228 transposase, IS4; transposase, IS4 family protein 49497..49931 Polaromonas naphthalenivorans CJ2 4685617 YP_973500.1 CDS Pnap_4485 NC_008758.1 50164 51234 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_2845 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 50164..51234 Polaromonas naphthalenivorans CJ2 4685618 YP_973501.1 CDS Pnap_4486 NC_008758.1 52320 52772 D hypothetical protein 52320..52772 Polaromonas naphthalenivorans CJ2 4685605 YP_973502.1 CDS Pnap_4487 NC_008758.1 53119 53355 D PFAM: Heavy metal transport/detoxification protein; KEGG: pmu:PM1891 mercuric ion-binding protein, putative; heavy metal transport/detoxification protein 53119..53355 Polaromonas naphthalenivorans CJ2 4685606 YP_973503.1 CDS Pnap_4488 NC_008758.1 53352 54212 D PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344; hypothetical protein 53352..54212 Polaromonas naphthalenivorans CJ2 4685603 YP_973504.1 CDS Pnap_4489 NC_008758.1 54236 54673 D PFAM: Heavy metal transport/detoxification protein; KEGG: rfr:Rfer_1143 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 54236..54673 Polaromonas naphthalenivorans CJ2 4685604 YP_973505.1 CDS Pnap_4490 NC_008758.1 54761 55153 D hypothetical protein 54761..55153 Polaromonas naphthalenivorans CJ2 4685607 YP_973506.1 CDS Pnap_4491 NC_008758.1 55228 57897 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase; copper-translocating P-type ATPase 55228..57897 Polaromonas naphthalenivorans CJ2 4685608 YP_973507.1 CDS Pnap_4492 NC_008758.1 58522 58788 D KEGG: eli:ELI_04580 hypothetical protein; hypothetical protein 58522..58788 Polaromonas naphthalenivorans CJ2 4685609 YP_973508.1 CDS Pnap_4493 NC_008758.1 59253 60926 D KEGG: eba:ebA6677 hypothetical protein; hypothetical protein 59253..60926 Polaromonas naphthalenivorans CJ2 4685610 YP_973509.1 CDS Pnap_4494 NC_008758.1 60942 62774 D KEGG: rfr:Rfer_3652 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; asparagine synthase 60942..62774 Polaromonas naphthalenivorans CJ2 4685597 YP_973510.1 CDS Pnap_4495 NC_008758.1 62771 63877 D catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 62771..63877 Polaromonas naphthalenivorans CJ2 4685598 YP_973511.1 CDS Pnap_4496 NC_008758.1 63874 65535 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 63874..65535 Polaromonas naphthalenivorans CJ2 4685595 YP_973512.1 CDS Pnap_4497 NC_008758.1 65532 67904 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: rpc:RPC_3807 fructose-6-phosphate phosphoketolase; putative phosphoketolase 65532..67904 Polaromonas naphthalenivorans CJ2 4685596 YP_973513.1 CDS Pnap_4498 NC_008758.1 67901 68971 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: bxe:Bxe_B1346 acetate kinase; acetate kinase 67901..68971 Polaromonas naphthalenivorans CJ2 4685599 YP_973514.1 CDS Pnap_4499 NC_008758.1 68992 71058 D TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: bcn:Bcen_5284 transketolase; transketolase 68992..71058 Polaromonas naphthalenivorans CJ2 4685600 YP_973515.1 CDS Pnap_4500 NC_008758.1 71029 71745 R KEGG: bxe:Bxe_B1342 hypothetical protein; hypothetical protein complement(71029..71745) Polaromonas naphthalenivorans CJ2 4685601 YP_973516.1 CDS Pnap_4501 NC_008758.1 71792 72817 R similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase complement(71792..72817) Polaromonas naphthalenivorans CJ2 4685602 YP_973517.1 CDS Pnap_4502 NC_008758.1 73378 74346 D KEGG: ret:RHE_CH01344 myo-inositol catabolism, sugar kinase protein; hypothetical protein 73378..74346 Polaromonas naphthalenivorans CJ2 4685589 YP_973518.1 CDS Pnap_4503 NC_008758.1 74343 75674 D KEGG: rfr:Rfer_1146 hypothetical protein; hypothetical protein 74343..75674 Polaromonas naphthalenivorans CJ2 4685590 YP_973519.1 CDS Pnap_4504 NC_008758.1 75735 76118 D hypothetical protein 75735..76118 Polaromonas naphthalenivorans CJ2 4685587 YP_973520.1 CDS Pnap_4505 NC_008758.1 76277 76939 R KEGG: mma:MM3344 transposase; transposase complement(76277..76939) Polaromonas naphthalenivorans CJ2 4685588 YP_973521.1 CDS Pnap_4506 NC_008758.1 76936 77409 R KEGG: mma:MM3343 transposase; transposase complement(76936..77409) Polaromonas naphthalenivorans CJ2 4685591 YP_973522.1 CDS Pnap_4507 NC_008758.1 77447 78565 R PFAM: phospholipase D/Transphosphatidylase; KEGG: cbu:CBU_0096 cardiolipin synthetase; phospholipase D/transphosphatidylase complement(77447..78565) Polaromonas naphthalenivorans CJ2 4685592 YP_973523.1 CDS Pnap_4508 NC_008758.1 78580 79122 R KEGG: eli:ELI_14395 hypothetical protein; hypothetical protein complement(78580..79122) Polaromonas naphthalenivorans CJ2 4685593 YP_973524.1 CDS Pnap_4509 NC_008758.1 79505 79906 D KEGG: bbr:BB1194 arsenical pump membrane protein; hypothetical protein 79505..79906 Polaromonas naphthalenivorans CJ2 4685594 YP_973525.1 CDS Pnap_4510 NC_008758.1 79924 80322 D KEGG: pol:Bpro_3494 hypothetical protein; hypothetical protein 79924..80322 Polaromonas naphthalenivorans CJ2 4685581 YP_973526.1 CDS Pnap_4511 NC_008758.1 80399 81685 D PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3493 outer membrane efflux protein; outer membrane efflux protein 80399..81685 Polaromonas naphthalenivorans CJ2 4685582 YP_973527.1 CDS Pnap_4512 NC_008758.1 81682 83340 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3492 secretion protein HlyD; RND family efflux transporter MFP subunit 81682..83340 Polaromonas naphthalenivorans CJ2 4685579 YP_973528.1 CDS Pnap_4513 NC_008758.1 83337 86504 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_3491 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 83337..86504 Polaromonas naphthalenivorans CJ2 4685580 YP_973529.1 CDS Pnap_4514 NC_008758.1 86692 87102 D hypothetical protein 86692..87102 Polaromonas naphthalenivorans CJ2 4685583 YP_973530.1 CDS Pnap_4515 NC_008758.1 87292 87756 D KEGG: rfr:Rfer_0421 hypothetical protein; hypothetical protein 87292..87756 Polaromonas naphthalenivorans CJ2 4685584 YP_973531.1 CDS Pnap_4516 NC_008758.1 87770 88030 D KEGG: pol:Bpro_1174 hypothetical protein; hypothetical protein 87770..88030 Polaromonas naphthalenivorans CJ2 4685585 YP_973532.1 CDS Pnap_4517 NC_008758.1 88165 89808 D PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: aae:aq_1130 periplasmic cell division protein (SufI); Bilirubin oxidase 88165..89808 Polaromonas naphthalenivorans CJ2 4685586 YP_973533.1 CDS Pnap_4518 NC_008758.1 89859 90137 D KEGG: rfr:Rfer_0420 hypothetical protein; hypothetical protein 89859..90137 Polaromonas naphthalenivorans CJ2 4685573 YP_973534.1 CDS Pnap_4519 NC_008758.1 90140 90808 D PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pol:Bpro_1176 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 90140..90808 Polaromonas naphthalenivorans CJ2 4685574 YP_973535.1 CDS Pnap_4520 NC_008758.1 90858 91151 D PFAM: Heavy metal transport/detoxification protein; KEGG: rso:RSc3348 probable cation-transporting ATPase transmembrane protein; heavy metal transport/detoxification protein 90858..91151 Polaromonas naphthalenivorans CJ2 4685571 YP_973536.1 CDS Pnap_4521 NC_008758.1 91210 91422 D KEGG: pol:Bpro_1177 hypothetical protein; hypothetical protein 91210..91422 Polaromonas naphthalenivorans CJ2 4685572 YP_973537.1 CDS Pnap_4522 NC_008758.1 91582 91824 D PFAM: Heavy metal transport/detoxification protein; KEGG: mbu:Mbur_0612 copper-translocating P-type ATPase; heavy metal transport/detoxification protein 91582..91824 Polaromonas naphthalenivorans CJ2 4685575 YP_973538.1 CDS Pnap_4523 NC_008758.1 91821 92675 D PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344; hypothetical protein 91821..92675 Polaromonas naphthalenivorans CJ2 4685576 YP_973539.1 CDS Pnap_4524 NC_008758.1 92699 95170 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase; copper-translocating P-type ATPase 92699..95170 Polaromonas naphthalenivorans CJ2 4685577 YP_973540.1 CDS Pnap_4525 NC_008758.1 95459 96223 D KEGG: rpb:RPB_1025 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 95459..96223 Polaromonas naphthalenivorans CJ2 4685578 YP_973541.1 CDS Pnap_4526 NC_008758.1 96224 98005 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; Propanediol utilization protein; KEGG: nwi:Nwi_1948 acetate kinase; acetate kinase 96224..98005 Polaromonas naphthalenivorans CJ2 4685565 YP_973542.1 CDS Pnap_4527 NC_008758.1 98009 99853 D KEGG: lpp:lpp2348 hypothetical protein; hypothetical protein 98009..99853 Polaromonas naphthalenivorans CJ2 4685566 YP_973543.1 CDS Pnap_4528 NC_008758.1 99937 101208 D PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_4365 major facilitator superfamily MFS_1; major facilitator superfamily transporter 99937..101208 Polaromonas naphthalenivorans CJ2 4685563 YP_973544.1 CDS Pnap_4529 NC_008758.1 101310 101453 D KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 101310..101453 Polaromonas naphthalenivorans CJ2 4685564 YP_973545.1 CDS Pnap_4530 NC_008758.1 101560 101721 D KEGG: pol:Bpro_1612 creatininase; creatininase 101560..101721 Polaromonas naphthalenivorans CJ2 4685567 YP_973546.1 CDS Pnap_4531 NC_008758.1 101889 102047 D hypothetical protein 101889..102047 Polaromonas naphthalenivorans CJ2 4685568 YP_973547.1 CDS Pnap_4532 NC_008758.1 102127 102573 D PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_0340 transposase IS3/IS911; transposase IS3/IS911 family protein 102127..102573 Polaromonas naphthalenivorans CJ2 4685569 YP_973548.1 CDS Pnap_4533 NC_008758.1 102561 102914 D PFAM: IS66 Orf2 family protein; KEGG: reu:Reut_C6378 IS66 Orf2 like; IS66 Orf2 family protein 102561..102914 Polaromonas naphthalenivorans CJ2 4685570 YP_973549.1 CDS Pnap_4534 NC_008758.1 102997 104595 D PFAM: transposase IS66; KEGG: reu:Reut_C6183 transposase IS66; transposase IS66 102997..104595 Polaromonas naphthalenivorans CJ2 4685557 YP_973550.1 CDS Pnap_4535 NC_008758.1 105063 105359 D PFAM: protein of unknown function DUF305; KEGG: mlo:mlr5326 hypothetical protein; hypothetical protein 105063..105359 Polaromonas naphthalenivorans CJ2 4685558 YP_973551.1 CDS Pnap_4536 NC_008758.1 105920 106324 D hypothetical protein 105920..106324 Polaromonas naphthalenivorans CJ2 4685555 YP_973552.1 CDS Pnap_4537 NC_008758.1 106515 106961 D KEGG: rfr:Rfer_0421 hypothetical protein; hypothetical protein 106515..106961 Polaromonas naphthalenivorans CJ2 4685556 YP_973553.1 CDS Pnap_4538 NC_008758.1 106975 107235 D KEGG: pol:Bpro_1174 hypothetical protein; hypothetical protein 106975..107235 Polaromonas naphthalenivorans CJ2 4685559 YP_973554.1 CDS Pnap_4539 NC_008758.1 107317 107619 D KEGG: pol:Bpro_1175 hypothetical protein; hypothetical protein 107317..107619 Polaromonas naphthalenivorans CJ2 4685560 YP_973555.1 CDS Pnap_4540 NC_008758.1 107616 108266 D PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rfr:Rfer_0419 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 107616..108266 Polaromonas naphthalenivorans CJ2 4685561 YP_973556.1 CDS Pnap_4541 NC_008758.1 108358 108585 D PFAM: Heavy metal transport/detoxification protein; KEGG: tbd:Tbd_1659 probable copper ion binding protein; heavy metal transport/detoxification protein 108358..108585 Polaromonas naphthalenivorans CJ2 4685562 YP_973557.1 CDS Pnap_4542 NC_008758.1 108840 109493 D KEGG: pol:Bpro_1196 hypothetical protein; hypothetical protein 108840..109493 Polaromonas naphthalenivorans CJ2 4685549 YP_973558.1 CDS Pnap_4544 NC_008758.1 110062 110694 D PFAM: LemA family protein; KEGG: nha:Nham_3402 LemA; LemA family protein 110062..110694 Polaromonas naphthalenivorans CJ2 4685488 YP_973559.1 CDS Pnap_4545 NC_008758.1 110691 111551 D PFAM: protein of unknown function DUF477; KEGG: bxe:Bxe_A1903 putative glycine rich membrane protein; hypothetical protein 110691..111551 Polaromonas naphthalenivorans CJ2 4685547 YP_973560.1 CDS Pnap_4546 NC_008758.1 111554 112051 D PFAM: protein of unknown function DUF477; KEGG: rpb:RPB_3954 protein of unknown function DUF477; hypothetical protein 111554..112051 Polaromonas naphthalenivorans CJ2 4685548 YP_973561.1 CDS Pnap_4547 NC_008758.1 112201 114597 D KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 112201..114597 Polaromonas naphthalenivorans CJ2 4685551 YP_973562.1 CDS Pnap_4548 NC_008758.1 114747 115790 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat; YVTN beta-propeller repeat-containing protein 114747..115790 Polaromonas naphthalenivorans CJ2 4685552 YP_973563.1 CDS Pnap_4549 NC_008758.1 115790 116215 D KEGG: mmc:Mmcs_1460 hypothetical protein; hypothetical protein 115790..116215 Polaromonas naphthalenivorans CJ2 4685553 YP_973564.1 CDS Pnap_4550 NC_008758.1 116701 117054 R KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein complement(116701..117054) Polaromonas naphthalenivorans CJ2 4685554 YP_973565.1 CDS Pnap_4551 NC_008758.1 117139 117654 R PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain; blue (type1) copper domain-containing protein complement(117139..117654) Polaromonas naphthalenivorans CJ2 4685541 YP_973566.1 CDS Pnap_4552 NC_008758.1 117704 119137 R PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase, type 3 complement(117704..119137) Polaromonas naphthalenivorans CJ2 4685542 YP_973567.1 CDS Pnap_4553 NC_008758.1 119184 120602 R KEGG: pol:Bpro_3484 putative copper resistance-related lipoprotein; putative copper resistance-related lipoprotein complement(119184..120602) Polaromonas naphthalenivorans CJ2 4685539 YP_973568.1 CDS Pnap_4554 NC_008758.1 120616 120954 R KEGG: pol:Bpro_3483 hypothetical protein; hypothetical protein complement(120616..120954) Polaromonas naphthalenivorans CJ2 4685540 YP_973569.1 CDS Pnap_4555 NC_008758.1 121077 121523 R KEGG: pol:Bpro_3482 hypothetical protein; hypothetical protein complement(121077..121523) Polaromonas naphthalenivorans CJ2 4685543 YP_973570.1 CDS Pnap_4556 NC_008758.1 121685 121966 R KEGG: dar:Daro_2282 hypothetical protein; hypothetical protein complement(121685..121966) Polaromonas naphthalenivorans CJ2 4685544 YP_973571.1 CDS Pnap_4557 NC_008758.1 122187 123563 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pfl:PFL_3148 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase complement(122187..123563) Polaromonas naphthalenivorans CJ2 4685545 YP_973572.1 CDS Pnap_4558 NC_008758.1 123608 124288 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4285 heavy-metal DNA-binding response regulator CzrR; two component heavy metal response transcriptional regulator complement(123608..124288) Polaromonas naphthalenivorans CJ2 4685546 YP_973573.1 CDS Pnap_4559 NC_008758.1 124443 124817 D hypothetical protein 124443..124817 Polaromonas naphthalenivorans CJ2 4685533 YP_973574.1 CDS Pnap_4560 NC_008758.1 124858 125208 D KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein 124858..125208 Polaromonas naphthalenivorans CJ2 4685534 YP_973575.1 CDS Pnap_4562 NC_008758.1 125941 126216 D PFAM: protein of unknown function DUF305; KEGG: mlo:mlr5326 hypothetical protein; hypothetical protein 125941..126216 Polaromonas naphthalenivorans CJ2 4685489 YP_973576.1 CDS Pnap_4563 NC_008758.1 126334 127275 D PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bld:BLi02092 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 126334..127275 Polaromonas naphthalenivorans CJ2 4685532 YP_973577.1 CDS Pnap_4564 NC_008758.1 127625 128887 R KEGG: rme:Rmet_6120 hypothetical protein; hypothetical protein complement(127625..128887) Polaromonas naphthalenivorans CJ2 4685535 YP_973578.1 CDS Pnap_4566 NC_008758.1 129919 131268 D PFAM: outer membrane efflux protein; KEGG: dar:Daro_2620 outer membrane efflux protein; outer membrane efflux protein 129919..131268 Polaromonas naphthalenivorans CJ2 4685490 YP_973579.1 CDS Pnap_4567 NC_008758.1 131296 131856 D KEGG: dar:Daro_2619 hypothetical protein; hypothetical protein 131296..131856 Polaromonas naphthalenivorans CJ2 4685537 YP_973580.1 CDS Pnap_4568 NC_008758.1 131853 132986 D KEGG: dar:Daro_2618 hypothetical protein; hypothetical protein 131853..132986 Polaromonas naphthalenivorans CJ2 4685538 YP_973581.1 CDS Pnap_4569 NC_008758.1 133000 136119 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2617 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 133000..136119 Polaromonas naphthalenivorans CJ2 4685525 YP_973582.1 CDS Pnap_4570 NC_008758.1 136180 136557 D KEGG: dar:Daro_2616 hypothetical protein; hypothetical protein 136180..136557 Polaromonas naphthalenivorans CJ2 4685526 YP_973583.1 CDS Pnap_4571 NC_008758.1 136640 137125 R hypothetical protein complement(136640..137125) Polaromonas naphthalenivorans CJ2 4685523 YP_973584.1 CDS Pnap_4572 NC_008758.1 137238 138251 R KEGG: pol:Bpro_5390 phage integrase; phage integrase complement(137238..138251) Polaromonas naphthalenivorans CJ2 4685524 YP_973585.1 CDS Pnap_4573 NC_008758.1 138452 139333 R KEGG: xom:XOO_2997 hypothetical protein; hypothetical protein complement(138452..139333) Polaromonas naphthalenivorans CJ2 4685527 YP_973586.1 CDS Pnap_4574 NC_008758.1 139353 139961 R KEGG: lpp:lpp2423 hypothetical protein; hypothetical protein complement(139353..139961) Polaromonas naphthalenivorans CJ2 4685528 YP_973587.1 CDS Pnap_4577 NC_008758.1 141836 142213 R KEGG: ana:alr4702 unknown protein; hypothetical protein complement(141836..142213) Polaromonas naphthalenivorans CJ2 4685530 YP_973588.1 CDS Pnap_4578 NC_008758.1 142679 143044 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pol:Bpro_3984 histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 142679..143044 Polaromonas naphthalenivorans CJ2 4685517 YP_973589.1 CDS Pnap_4579 NC_008758.1 143907 144353 D PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 143907..144353 Polaromonas naphthalenivorans CJ2 4685483 YP_973590.1 CDS Pnap_4580 NC_008758.1 144864 145745 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_A1834 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 144864..145745 Polaromonas naphthalenivorans CJ2 4685515 YP_973591.1 CDS Pnap_4581 NC_008758.1 145791 146423 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sil:SPO0563 glutathione S-transferase, putative; glutathione S-transferase domain-containing protein 145791..146423 Polaromonas naphthalenivorans CJ2 4685516 YP_973592.1 CDS Pnap_4582 NC_008758.1 146614 147075 D hypothetical protein 146614..147075 Polaromonas naphthalenivorans CJ2 4685519 YP_973593.1 CDS Pnap_4583 NC_008758.1 147500 148423 D KEGG: eca:ECA2874 hypothetical protein; hypothetical protein 147500..148423 Polaromonas naphthalenivorans CJ2 4685520 YP_973594.1 CDS Pnap_4584 NC_008758.1 148416 151751 D KEGG: eca:ECA2875 putative ATP-binding protein; putative ATP-binding protein 148416..151751 Polaromonas naphthalenivorans CJ2 4685521 YP_973595.1 CDS Pnap_4585 NC_008758.1 151744 152583 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: eca:ECA2876 putative phage-related protein; phosphoadenosine phosphosulfate reductase 151744..152583 Polaromonas naphthalenivorans CJ2 4685522 YP_973596.1 CDS Pnap_4586 NC_008758.1 152593 154620 R KEGG: eca:ECA2877 hypothetical protein; hypothetical protein complement(152593..154620) Polaromonas naphthalenivorans CJ2 4685509 YP_973597.1 CDS Pnap_4587 NC_008758.1 154617 156971 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: eca:ECA2878 putative signal transduction protein; histidine kinase complement(154617..156971) Polaromonas naphthalenivorans CJ2 4685510 YP_973598.1 CDS Pnap_4588 NC_008758.1 157006 162444 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: tth:TTC0474 cell division protein ftsK; cell division protein FtsK complement(157006..162444) Polaromonas naphthalenivorans CJ2 4685507 YP_973599.1 CDS Pnap_4589 NC_008758.1 162441 163967 R hypothetical protein complement(162441..163967) Polaromonas naphthalenivorans CJ2 4685508 YP_973600.1 CDS Pnap_4590 NC_008758.1 163964 164860 R hypothetical protein complement(163964..164860) Polaromonas naphthalenivorans CJ2 4685511 YP_973601.1 CDS Pnap_4591 NC_008758.1 164912 165424 D hypothetical protein 164912..165424 Polaromonas naphthalenivorans CJ2 4685512 YP_973602.1 CDS Pnap_4592 NC_008758.1 166252 166830 R KEGG: pol:Bpro_5319 hypothetical protein; hypothetical protein complement(166252..166830) Polaromonas naphthalenivorans CJ2 4685513 YP_973603.1 CDS Pnap_4593 NC_008758.1 166827 167396 R KEGG: pol:Bpro_5318 prevent-host-death protein; prevent-host-death protein complement(166827..167396) Polaromonas naphthalenivorans CJ2 4685514 YP_973604.1 CDS Pnap_4594 NC_008758.1 167433 167678 D KEGG: eba:ebA246 putative transposase, fragment; hypothetical protein 167433..167678 Polaromonas naphthalenivorans CJ2 4685501 YP_973605.1 CDS Pnap_4595 NC_008758.1 168101 168976 D hypothetical protein 168101..168976 Polaromonas naphthalenivorans CJ2 4685502 YP_973606.1 CDS Pnap_4596 NC_008758.1 170094 170477 R KEGG: eba:ebA562 transposase; transposase complement(170094..170477) Polaromonas naphthalenivorans CJ2 4685499 YP_973607.1 CDS Pnap_4597 NC_008758.1 170759 170971 R PFAM: transposase IS3/IS911 family protein; KEGG: rso:RSp0547 ISRSO8-transposase orfA protein; transposase IS3/IS911 family protein complement(170759..170971) Polaromonas naphthalenivorans CJ2 4685500 YP_973608.1 CDS Pnap_4598 NC_008758.1 171211 171600 D hypothetical protein 171211..171600 Polaromonas naphthalenivorans CJ2 4685503 YP_973609.1 CDS Pnap_4599 NC_008758.1 171603 172796 D SMART: AAA ATPase; KEGG: dar:Daro_3951 AAA ATPase, central region; ATPase AAA 171603..172796 Polaromonas naphthalenivorans CJ2 4685504 YP_973610.1 CDS Pnap_4600 NC_008758.1 172879 173319 D hypothetical protein 172879..173319 Polaromonas naphthalenivorans CJ2 4685505 YP_973611.1 CDS Pnap_4601 NC_008758.1 173898 174209 D KEGG: dra:DRB0120m putative transposase; hypothetical protein 173898..174209 Polaromonas naphthalenivorans CJ2 4685506 YP_973612.1 CDS Pnap_4602 NC_008758.1 174395 175015 R PFAM: Radical SAM domain protein; KEGG: mxa:MXAN_2901 putative radical SAM domain protein; radical SAM domain-containing protein complement(174395..175015) Polaromonas naphthalenivorans CJ2 4685493 YP_973613.1 CDS Pnap_4603 NC_008758.1 175012 176886 R PFAM: ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: bcn:Bcen_1418 ATPase AAA-2; ATPase complement(175012..176886) Polaromonas naphthalenivorans CJ2 4685494 YP_973614.1 CDS Pnap_4604 NC_008758.1 176873 177976 R hypothetical protein complement(176873..177976) Polaromonas naphthalenivorans CJ2 4685491 YP_973615.1 CDS Pnap_4605 NC_008758.1 177990 180455 R SMART: Nucleotide binding protein, PINc; nucleotide binding protein, PINc complement(177990..180455) Polaromonas naphthalenivorans CJ2 4685492 YP_973616.1 CDS Pnap_4606 NC_008758.1 180452 184306 R KEGG: rpd:RPD_2126 ATPase; superfamily I DNA/RNA helicase complement(180452..184306) Polaromonas naphthalenivorans CJ2 4685495 YP_973617.1 CDS Pnap_4607 NC_008758.1 184487 184906 R hypothetical protein complement(184487..184906) Polaromonas naphthalenivorans CJ2 4685496 YP_973618.1 CDS Pnap_4608 NC_008758.1 185415 186455 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase; transposase IS116/IS110/IS902 family protein complement(185415..186455) Polaromonas naphthalenivorans CJ2 4685497 YP_973619.1 CDS Pnap_4610 NC_008758.1 188932 189345 D hypothetical protein 188932..189345 Polaromonas naphthalenivorans CJ2 4685482 YP_973620.1 CDS Pnap_4813 NC_008759.1 508 1071 R hypothetical protein complement(508..1071) Polaromonas naphthalenivorans CJ2 4685702 YP_973621.1 CDS Pnap_4814 NC_008759.1 1068 2318 R KEGG: sit:TM1040_0955 conserved hypothetical protein; hypothetical protein complement(1068..2318) Polaromonas naphthalenivorans CJ2 4685688 YP_973622.1 CDS Pnap_4815 NC_008759.1 2427 2984 R hypothetical protein complement(2427..2984) Polaromonas naphthalenivorans CJ2 4685735 YP_973623.1 CDS Pnap_4816 NC_008759.1 3338 4129 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: rfr:Rfer_0852 methionine aminopeptidase, type I; methionine aminopeptidase, type I complement(3338..4129) Polaromonas naphthalenivorans CJ2 4685736 YP_973624.1 CDS Pnap_4817 NC_008759.1 4129 4383 R KEGG: rfr:Rfer_0851 hypothetical protein; hypothetical protein complement(4129..4383) Polaromonas naphthalenivorans CJ2 4685672 YP_973625.1 CDS Pnap_4818 NC_008759.1 4526 5320 R hypothetical protein complement(4526..5320) Polaromonas naphthalenivorans CJ2 4685673 YP_973626.1 CDS Pnap_4819 NC_008759.1 5435 5764 D KEGG: lpl:lp_3570 transposase (putative); transposase (putative) 5435..5764 Polaromonas naphthalenivorans CJ2 4685715 YP_973627.1 CDS Pnap_4820 NC_008759.1 5883 6194 D KEGG: neu:NE1552 transposase IS4 family; hypothetical protein 5883..6194 Polaromonas naphthalenivorans CJ2 4685716 YP_973628.1 CDS Pnap_4821 NC_008759.1 6216 6782 D KEGG: bcn:Bcen_5856 hypothetical protein; hypothetical protein 6216..6782 Polaromonas naphthalenivorans CJ2 4685809 YP_973629.1 CDS Pnap_4822 NC_008759.1 7040 7771 D hypothetical protein 7040..7771 Polaromonas naphthalenivorans CJ2 4685810 YP_973630.1 CDS Pnap_4823 NC_008759.1 7768 8064 D hypothetical protein 7768..8064 Polaromonas naphthalenivorans CJ2 4685709 YP_973631.1 CDS Pnap_4824 NC_008759.1 8080 8490 D hypothetical protein 8080..8490 Polaromonas naphthalenivorans CJ2 4685710 YP_973632.1 CDS Pnap_4825 NC_008759.1 8463 9788 R KEGG: sgl:SG2354 hypothetical protein; hypothetical protein complement(8463..9788) Polaromonas naphthalenivorans CJ2 4685694 YP_973633.1 CDS Pnap_4826 NC_008759.1 10686 11291 R hypothetical protein complement(10686..11291) Polaromonas naphthalenivorans CJ2 4685695 YP_973634.1 CDS Pnap_4827 NC_008759.1 11519 12142 D hypothetical protein 11519..12142 Polaromonas naphthalenivorans CJ2 4685801 YP_973635.1 CDS Pnap_4828 NC_008759.1 12347 13003 D hypothetical protein 12347..13003 Polaromonas naphthalenivorans CJ2 4685802 YP_973636.1 CDS Pnap_4829 NC_008759.1 13077 13469 D KEGG: eba:ebA106 hypothetical protein; hypothetical protein 13077..13469 Polaromonas naphthalenivorans CJ2 4685797 YP_973637.1 CDS Pnap_4830 NC_008759.1 13466 14689 D KEGG: pol:Bpro_0961 hypothetical protein; hypothetical protein 13466..14689 Polaromonas naphthalenivorans CJ2 4685798 YP_973638.1 CDS Pnap_4831 NC_008759.1 15293 16102 R PFAM: Silent information regulator protein Sir2; KEGG: bxe:Bxe_B2799 silent information regulator protein Sir2; silent information regulator protein Sir2 complement(15293..16102) Polaromonas naphthalenivorans CJ2 4685693 YP_973639.1 CDS Pnap_4832 NC_008759.1 16723 17220 R KEGG: pol:Bpro_5386 hypothetical protein; hypothetical protein complement(16723..17220) Polaromonas naphthalenivorans CJ2 4685666 YP_973640.1 CDS Pnap_4833 NC_008759.1 18125 18871 D KEGG: bxe:Bxe_A0247 hypothetical protein; hypothetical protein 18125..18871 Polaromonas naphthalenivorans CJ2 4685667 YP_973641.1 CDS Pnap_4834 NC_008759.1 18868 19368 D KEGG: bps:BPSL0759 hypothetical protein; hypothetical protein 18868..19368 Polaromonas naphthalenivorans CJ2 4685684 YP_973642.1 CDS Pnap_4835 NC_008759.1 19365 19685 D hypothetical protein 19365..19685 Polaromonas naphthalenivorans CJ2 4685685 YP_973643.1 CDS Pnap_4836 NC_008759.1 19682 19996 D hypothetical protein 19682..19996 Polaromonas naphthalenivorans CJ2 4685660 YP_973644.1 CDS Pnap_4837 NC_008759.1 20058 20303 D hypothetical protein 20058..20303 Polaromonas naphthalenivorans CJ2 4685661 YP_973645.1 CDS Pnap_4838 NC_008759.1 20392 20631 D hypothetical protein 20392..20631 Polaromonas naphthalenivorans CJ2 4685664 YP_973646.1 CDS Pnap_4839 NC_008759.1 20637 20846 R hypothetical protein complement(20637..20846) Polaromonas naphthalenivorans CJ2 4685665 YP_973647.1 CDS Pnap_4840 NC_008759.1 20886 21182 D KEGG: bbr:BB2366 putative DNA-binding protein; putative DNA-binding protein 20886..21182 Polaromonas naphthalenivorans CJ2 4685807 YP_973648.1 CDS Pnap_4841 NC_008759.1 21179 21535 D hypothetical protein 21179..21535 Polaromonas naphthalenivorans CJ2 4685808 YP_973649.1 CDS Pnap_4842 NC_008759.1 21728 23065 R KEGG: sgl:SG2354 hypothetical protein; hypothetical protein complement(21728..23065) Polaromonas naphthalenivorans CJ2 4685698 YP_973650.1 CDS Pnap_4843 NC_008759.1 23547 23921 D hypothetical protein 23547..23921 Polaromonas naphthalenivorans CJ2 4685699 YP_973651.1 CDS Pnap_4844 NC_008759.1 23918 24709 D PFAM: metallophosphoesterase; KEGG: bps:BPSL0758 putative phosphoesterase; metallophosphoesterase 23918..24709 Polaromonas naphthalenivorans CJ2 4685727 YP_973652.1 CDS Pnap_4845 NC_008759.1 24757 25020 D hypothetical protein 24757..25020 Polaromonas naphthalenivorans CJ2 4685728 YP_973653.1 CDS Pnap_4846 NC_008759.1 25037 25342 R PFAM: acylphosphatase; KEGG: rso:RSc0219 putative acylphosphatase protein; acylphosphatase complement(25037..25342) Polaromonas naphthalenivorans CJ2 4685674 YP_973654.1 CDS Pnap_4847 NC_008759.1 25421 25666 D hypothetical protein 25421..25666 Polaromonas naphthalenivorans CJ2 4685675 YP_973655.1 CDS Pnap_4848 NC_008759.1 26218 27315 D KEGG: pfo:Pfl_3330 DNA alkylation repair enzyme-like; DNA alkylation repair enzyme-like protein 26218..27315 Polaromonas naphthalenivorans CJ2 4685654 YP_973656.1 CDS Pnap_4849 NC_008759.1 27545 28195 D PFAM: helix-turn-helix domain protein; KEGG: tbd:Tbd_1344 transcriptional regulator, XRE family; XRE family transcriptional regulator 27545..28195 Polaromonas naphthalenivorans CJ2 4685655 YP_973657.1 CDS Pnap_4850 NC_008759.1 28519 28791 R KEGG: dar:Daro_1923 hypothetical protein; hypothetical protein complement(28519..28791) Polaromonas naphthalenivorans CJ2 4685703 YP_973658.1 CDS Pnap_4851 NC_008759.1 28880 29233 R PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: pfl:PFL_3843 MazG nucleotide pyrophosphohydrolase domain protein; MazG nucleotide pyrophosphohydrolase complement(28880..29233) Polaromonas naphthalenivorans CJ2 4685704 YP_973659.1 CDS Pnap_4852 NC_008759.1 29356 30111 D KEGG: hypothetical protein; hypothetical protein 29356..30111 Polaromonas naphthalenivorans CJ2 4685691 YP_973660.1 CDS Pnap_4853 NC_008759.1 30119 30565 D KEGG: gme:Gmet_3000 conserved hypothetical protein-signal peptide prediction; signal peptide prediction 30119..30565 Polaromonas naphthalenivorans CJ2 4685692 YP_973661.1 CDS Pnap_4854 NC_008759.1 31290 32399 R KEGG: pol:Bpro_2110 hypothetical protein; hypothetical protein complement(31290..32399) Polaromonas naphthalenivorans CJ2 4685725 YP_973662.1 CDS Pnap_4855 NC_008759.1 32558 33916 D PFAM: HipA domain protein; KEGG: pol:Bpro_1570 HipA-like; hypothetical protein 32558..33916 Polaromonas naphthalenivorans CJ2 4685726 YP_973663.1 CDS Pnap_4856 NC_008759.1 34250 34507 R KEGG: noc:Noc_1099 hypothetical protein; hypothetical protein complement(34250..34507) Polaromonas naphthalenivorans CJ2 4685719 YP_973664.1 CDS Pnap_4858 NC_008759.1 35461 36123 D PFAM: protein of unknown function DUF433; KEGG: ret:RHE_PA00164 hypothetical protein; hypothetical protein 35461..36123 Polaromonas naphthalenivorans CJ2 4685786 YP_973665.1 CDS Pnap_4859 NC_008759.1 36413 37345 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bxe:Bxe_B0843 heavy metal/H+ antiporter, CDF family; cation diffusion facilitator family transporter 36413..37345 Polaromonas naphthalenivorans CJ2 4685737 YP_973666.1 CDS Pnap_4860 NC_008759.1 37426 38112 R KEGG: dar:Daro_1179 hypothetical protein; hypothetical protein complement(37426..38112) Polaromonas naphthalenivorans CJ2 4685738 YP_973667.1 CDS Pnap_4861 NC_008759.1 38152 38619 D hypothetical protein 38152..38619 Polaromonas naphthalenivorans CJ2 4685711 YP_973668.1 CDS Pnap_4862 NC_008759.1 38745 39215 D hypothetical protein 38745..39215 Polaromonas naphthalenivorans CJ2 4685712 YP_973669.1 CDS Pnap_4863 NC_008759.1 39451 39924 R hypothetical protein complement(39451..39924) Polaromonas naphthalenivorans CJ2 4685662 YP_973670.1 CDS Pnap_4864 NC_008759.1 40277 40531 R hypothetical protein complement(40277..40531) Polaromonas naphthalenivorans CJ2 4685663 YP_973671.1 CDS Pnap_4865 NC_008759.1 41313 41759 D KEGG: rfr:Rfer_0742 hypothetical protein; hypothetical protein 41313..41759 Polaromonas naphthalenivorans CJ2 4685729 YP_973672.1 CDS Pnap_4866 NC_008759.1 42101 42526 D hypothetical protein 42101..42526 Polaromonas naphthalenivorans CJ2 4685730 YP_973673.1 CDS Pnap_4867 NC_008759.1 42622 43443 D SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: reu:Reut_B4467 helix-turn-helix, AraC type; helix-turn-helix domain-containing protein 42622..43443 Polaromonas naphthalenivorans CJ2 4685678 YP_973674.1 CDS Pnap_4868 NC_008759.1 43431 44705 R PFAM: Di-haem cytochrome c peroxidase; KEGG: reu:Reut_B4466 di-haem cytochrome c peroxidase; di-haem cytochrome c peroxidase complement(43431..44705) Polaromonas naphthalenivorans CJ2 4685679 YP_973675.1 CDS Pnap_4869 NC_008759.1 44702 45538 R KEGG: reu:Reut_B4465 auxin-binding protein; hypothetical protein complement(44702..45538) Polaromonas naphthalenivorans CJ2 4685658 YP_973676.1 CDS Pnap_4870 NC_008759.1 46264 46680 D hypothetical protein 46264..46680 Polaromonas naphthalenivorans CJ2 4685659 YP_973677.1 CDS Pnap_4871 NC_008759.1 46954 48015 R SMART: HNH nuclease; KEGG: rfr:Rfer_1208 HNH nuclease; HNH nuclease complement(46954..48015) Polaromonas naphthalenivorans CJ2 4685652 YP_973678.1 CDS Pnap_4872 NC_008759.1 48020 48421 R PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1209 histidine triad (HIT) protein; histidine triad (HIT) protein complement(48020..48421) Polaromonas naphthalenivorans CJ2 4685653 YP_973679.1 CDS Pnap_4873 NC_008759.1 48530 49258 R KEGG: noc:Noc_1323 hypothetical protein; hypothetical protein complement(48530..49258) Polaromonas naphthalenivorans CJ2 4685769 YP_973680.1 CDS Pnap_4874 NC_008759.1 49378 50232 R hypothetical protein complement(49378..50232) Polaromonas naphthalenivorans CJ2 4685770 YP_973681.1 CDS Pnap_4875 NC_008759.1 50424 50852 R KEGG: rfr:Rfer_3110 hypothetical protein; hypothetical protein complement(50424..50852) Polaromonas naphthalenivorans CJ2 4685793 YP_973682.1 CDS Pnap_4876 NC_008759.1 51097 52152 D hypothetical protein 51097..52152 Polaromonas naphthalenivorans CJ2 4685794 YP_973683.1 CDS Pnap_4877 NC_008759.1 52493 53179 R hypothetical protein complement(52493..53179) Polaromonas naphthalenivorans CJ2 4685811 YP_973684.1 CDS xseA NC_008759.1 54079 55809 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 54079..55809 Polaromonas naphthalenivorans CJ2 4685812 YP_973685.1 CDS Pnap_4879 NC_008759.1 55817 56092 D KEGG: par:Psyc_1292 hypothetical protein; hypothetical protein 55817..56092 Polaromonas naphthalenivorans CJ2 4685723 YP_973686.1 CDS Pnap_4880 NC_008759.1 56142 56549 R KEGG: bxe:Bxe_A3008 hypothetical protein; hypothetical protein complement(56142..56549) Polaromonas naphthalenivorans CJ2 4685724 YP_973687.1 CDS Pnap_4881 NC_008759.1 56811 57206 R PFAM: TfoX, N-terminal domain protein; KEGG: pol:Bpro_0665 TfoX-like; TfoX domain-containing protein complement(56811..57206) Polaromonas naphthalenivorans CJ2 4685689 YP_973688.1 CDS Pnap_4882 NC_008759.1 57338 57604 D KEGG: bxe:Bxe_B0210 hypothetical protein; hypothetical protein 57338..57604 Polaromonas naphthalenivorans CJ2 4685690 YP_973689.1 CDS Pnap_4883 NC_008759.1 57852 58097 D KEGG: rfr:Rfer_0740 hypothetical protein; hypothetical protein 57852..58097 Polaromonas naphthalenivorans CJ2 4685676 YP_973690.1 CDS Pnap_4884 NC_008759.1 58609 59103 D hypothetical protein 58609..59103 Polaromonas naphthalenivorans CJ2 4685677 YP_973691.1 CDS Pnap_4885 NC_008759.1 59235 59714 D hypothetical protein 59235..59714 Polaromonas naphthalenivorans CJ2 4685668 YP_973692.1 CDS Pnap_4886 NC_008759.1 60019 60363 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: eba:ebB208 putative HNS-like transcription regulator protein; histone family protein nucleoid-structuring protein H-NS 60019..60363 Polaromonas naphthalenivorans CJ2 4685669 YP_973693.1 CDS Pnap_4887 NC_008759.1 60826 61050 R TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bcn:Bcen_4816 transcriptional regulator, AbrB family; AbrB family transcriptional regulator complement(60826..61050) Polaromonas naphthalenivorans CJ2 4685686 YP_973694.1 CDS Pnap_4888 NC_008759.1 61259 61846 D hypothetical protein 61259..61846 Polaromonas naphthalenivorans CJ2 4685687 YP_973695.1 CDS Pnap_4889 NC_008759.1 61865 62161 D KEGG: pen:PSEEN3029 chromate transporter; hypothetical protein 61865..62161 Polaromonas naphthalenivorans CJ2 4685656 YP_973696.1 CDS Pnap_4890 NC_008759.1 62249 62722 R SMART: helix-turn-helix domain protein; KEGG: pae:PA0906 probable transcriptional regulator; XRE family transcriptional regulator complement(62249..62722) Polaromonas naphthalenivorans CJ2 4685657 YP_973697.1 CDS Pnap_4891 NC_008759.1 62792 64600 R KEGG: bps:BPSL0750 hypothetical protein; hypothetical protein complement(62792..64600) Polaromonas naphthalenivorans CJ2 4685753 YP_973698.1 CDS Pnap_4892 NC_008759.1 64585 65088 R KEGG: bps:BPSL0749 hypothetical protein; hypothetical protein complement(64585..65088) Polaromonas naphthalenivorans CJ2 4685754 YP_973699.1 CDS Pnap_4893 NC_008759.1 65085 66152 R KEGG: bps:BPSL0748 hypothetical protein; hypothetical protein complement(65085..66152) Polaromonas naphthalenivorans CJ2 4685670 YP_973700.1 CDS Pnap_4894 NC_008759.1 66377 67198 D KEGG: rfr:Rfer_1225 hypothetical protein; hypothetical protein 66377..67198 Polaromonas naphthalenivorans CJ2 4685671 YP_973701.1 CDS Pnap_4895 NC_008759.1 67137 68468 D KEGG: rfr:Rfer_1226 hypothetical protein; hypothetical protein 67137..68468 Polaromonas naphthalenivorans CJ2 4685743 YP_973702.1 CDS Pnap_4896 NC_008759.1 68478 71603 D KEGG: rfr:Rfer_1227 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III, alpha subunit 68478..71603 Polaromonas naphthalenivorans CJ2 4685744 YP_973703.1 CDS Pnap_4897 NC_008759.1 72067 73236 R hypothetical protein complement(72067..73236) Polaromonas naphthalenivorans CJ2 4685682 YP_973704.1 CDS Pnap_4898 NC_008759.1 73646 74188 D KEGG: rfr:Rfer_4341 DNA-directed DNA polymerase; DNA-directed DNA polymerase 73646..74188 Polaromonas naphthalenivorans CJ2 4685683 YP_973705.1 CDS Pnap_4899 NC_008759.1 74383 75180 D PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 74383..75180 Polaromonas naphthalenivorans CJ2 4685803 YP_973706.1 CDS Pnap_4900 NC_008759.1 76772 78175 R KEGG: bps:BPSL0747 hypothetical protein; hypothetical protein complement(76772..78175) Polaromonas naphthalenivorans CJ2 4685804 YP_973707.1 CDS Pnap_4901 NC_008759.1 78211 78651 D hypothetical protein 78211..78651 Polaromonas naphthalenivorans CJ2 4685745 YP_973708.1 CDS Pnap_4902 NC_008759.1 78798 79379 R KEGG: rfr:Rfer_1226 hypothetical protein; hypothetical protein complement(78798..79379) Polaromonas naphthalenivorans CJ2 4685746 YP_973709.1 CDS Pnap_4903 NC_008759.1 79379 79630 R hypothetical protein complement(79379..79630) Polaromonas naphthalenivorans CJ2 4685696 YP_973710.1 CDS Pnap_4904 NC_008759.1 79641 80123 R KEGG: dar:Daro_0976 hypothetical protein; hypothetical protein complement(79641..80123) Polaromonas naphthalenivorans CJ2 4685697 YP_973711.1 CDS Pnap_4905 NC_008759.1 80664 82586 D KEGG: rpa:RPA3945 hypothetical protein; hypothetical protein 80664..82586 Polaromonas naphthalenivorans CJ2 4685747 YP_973712.1 CDS Pnap_4906 NC_008759.1 82892 84841 R KEGG: bte:BTH_I2719 pathogenesis-related protein; pathogenesis-related protein complement(82892..84841) Polaromonas naphthalenivorans CJ2 4685748 YP_973713.1 CDS Pnap_4907 NC_008759.1 84838 87147 R KEGG: bte:BTH_I2720 hypothetical protein; hypothetical protein complement(84838..87147) Polaromonas naphthalenivorans CJ2 4685749 YP_973714.1 CDS Pnap_4908 NC_008759.1 87667 87915 D hypothetical protein 87667..87915 Polaromonas naphthalenivorans CJ2 4685750 YP_973715.1 CDS Pnap_4909 NC_008759.1 88038 88877 R PFAM: protein of unknown function DUF88; KEGG: xcv:XCV1700 hypothetical protein; hypothetical protein complement(88038..88877) Polaromonas naphthalenivorans CJ2 4685713 YP_973716.1 CDS Pnap_4910 NC_008759.1 89447 91201 D KEGG: bcn:Bcen_2889 N-6 DNA methylase; N-6 DNA methylase 89447..91201 Polaromonas naphthalenivorans CJ2 4685714 YP_973717.1 CDS Pnap_4911 NC_008759.1 91204 94035 D KEGG: bcn:Bcen_2888 hypothetical protein; hypothetical protein 91204..94035 Polaromonas naphthalenivorans CJ2 4685757 YP_973718.1 CDS Pnap_4912 NC_008759.1 94028 98260 D PFAM: helicase domain protein; KEGG: bcn:Bcen_2887 helicase-like; helicase domain-containing protein 94028..98260 Polaromonas naphthalenivorans CJ2 4685758 YP_973719.1 CDS Pnap_4913 NC_008759.1 98257 100521 D KEGG: bcn:Bcen_2886 hypothetical protein; hypothetical protein 98257..100521 Polaromonas naphthalenivorans CJ2 4685755 YP_973720.1 CDS Pnap_4914 NC_008759.1 100508 101356 D KEGG: rpb:RPB_2530 hypothetical protein; hypothetical protein 100508..101356 Polaromonas naphthalenivorans CJ2 4685756 YP_973721.1 CDS Pnap_4915 NC_008759.1 101403 101609 D hypothetical protein 101403..101609 Polaromonas naphthalenivorans CJ2 4685741 YP_973722.1 CDS Pnap_4916 NC_008759.1 101619 103442 D PFAM: N-6 DNA methylase; KEGG: syf:Synpcc7942_1060 type I restriction-modification; N-6 DNA methylase 101619..103442 Polaromonas naphthalenivorans CJ2 4685742 YP_973723.1 CDS Pnap_4917 NC_008759.1 103439 104677 D KEGG: mfa:Mfla_2606 restriction modification system DNA specificity domain; restriction modification system DNA specificity subunit 103439..104677 Polaromonas naphthalenivorans CJ2 4685759 YP_973724.1 CDS Pnap_4918 NC_008759.1 104824 106113 R PFAM: HipA domain protein; KEGG: nwi:Nwi_2868 hypothetical protein; HipA domain-containing protein complement(104824..106113) Polaromonas naphthalenivorans CJ2 4685760 YP_973725.1 CDS Pnap_4919 NC_008759.1 106646 106951 D hypothetical protein 106646..106951 Polaromonas naphthalenivorans CJ2 4685767 YP_973726.1 CDS Pnap_4920 NC_008759.1 107029 108429 R KEGG: dar:Daro_2234 hypothetical protein; hypothetical protein complement(107029..108429) Polaromonas naphthalenivorans CJ2 4685768 YP_973727.1 CDS Pnap_4921 NC_008759.1 108871 110001 D KEGG: reu:Reut_C6002 hypothetical protein; hypothetical protein 108871..110001 Polaromonas naphthalenivorans CJ2 4685761 YP_973728.1 CDS Pnap_4922 NC_008759.1 110194 110793 D KEGG: bcn:Bcen_5890 hypothetical protein; hypothetical protein 110194..110793 Polaromonas naphthalenivorans CJ2 4685762 YP_973729.1 CDS Pnap_4923 NC_008759.1 110826 111443 D hypothetical protein 110826..111443 Polaromonas naphthalenivorans CJ2 4685773 YP_973730.1 CDS Pnap_4924 NC_008759.1 111722 114829 D PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: syf:Synpcc7942_1065 DEAD/DEAH box helicase-like; hypothetical protein 111722..114829 Polaromonas naphthalenivorans CJ2 4685774 YP_973731.1 CDS Pnap_4925 NC_008759.1 114936 116378 D KEGG: sma:SAV6943 hypothetical protein; hypothetical protein 114936..116378 Polaromonas naphthalenivorans CJ2 4685771 YP_973732.1 CDS Pnap_4926 NC_008759.1 116375 117106 D KEGG: sma:SAV6944 hypothetical protein; hypothetical protein 116375..117106 Polaromonas naphthalenivorans CJ2 4685772 YP_973733.1 CDS Pnap_4927 NC_008759.1 117108 121433 D KEGG: sco:SCO1407 hypothetical protein; hypothetical protein 117108..121433 Polaromonas naphthalenivorans CJ2 4685777 YP_973734.1 CDS Pnap_4928 NC_008759.1 121430 122431 D hypothetical protein 121430..122431 Polaromonas naphthalenivorans CJ2 4685778 YP_973735.1 CDS Pnap_4930 NC_008759.1 122911 123273 R hypothetical protein complement(122911..123273) Polaromonas naphthalenivorans CJ2 4685781 YP_973736.1 CDS Pnap_4931 NC_008759.1 125023 125409 D hypothetical protein 125023..125409 Polaromonas naphthalenivorans CJ2 4685764 YP_973737.1 CDS Pnap_4932 NC_008759.1 126462 128318 D PFAM: phage integrase family protein; KEGG: reu:Reut_C6164 phage integrase:phage integrase, N-terminal SAM-like; phage integrase family protein 126462..128318 Polaromonas naphthalenivorans CJ2 4685731 YP_973738.1 CDS Pnap_4933 NC_008759.1 128539 129606 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pac:PPA1387 chromosome partitioning protein; cobyrinic acid a,c-diamide synthase 128539..129606 Polaromonas naphthalenivorans CJ2 4685732 YP_973739.1 CDS Pnap_4934 NC_008759.1 129606 130601 D TIGRFAM: parB-like partition proteins; KEGG: bpm:BURPS1710b_A1504 ParB family protein; parB-like partition proteins 129606..130601 Polaromonas naphthalenivorans CJ2 4685775 YP_973740.1 CDS Pnap_4936 NC_008759.1 132169 132564 D KEGG: plu:plu4276 transposase, IS982 family; hypothetical protein 132169..132564 Polaromonas naphthalenivorans CJ2 4685782 YP_973741.1 CDS Pnap_4937 NC_008759.1 133149 133856 D PFAM: transposase, IS4 family protein; KEGG: ftu:FTT1523c transposase; transposase, IS4 family protein 133149..133856 Polaromonas naphthalenivorans CJ2 4685733 YP_973742.1 CDS Pnap_4938 NC_008759.1 134639 136054 D PFAM: initiator RepB protein; KEGG: reu:Reut_C6161 hypothetical protein; initiator RepB protein 134639..136054 Polaromonas naphthalenivorans CJ2 4685734 YP_973743.1 CDS Pnap_4939 NC_008759.1 136855 137772 D PFAM: phage integrase family protein; KEGG: bxe:Bxe_B3024 putative phage integrase; phage integrase family protein 136855..137772 Polaromonas naphthalenivorans CJ2 4685680 YP_973744.1 CDS Pnap_4940 NC_008759.1 137957 139345 D PFAM: filamentation induced by cAMP protein Fic; KEGG: eba:c2A308 hypothetical protein; filamentation induced by cAMP protein Fic 137957..139345 Polaromonas naphthalenivorans CJ2 4685681 YP_973745.1 CDS Pnap_4941 NC_008759.1 139571 140743 R KEGG: reu:Reut_C6002 hypothetical protein; hypothetical protein complement(139571..140743) Polaromonas naphthalenivorans CJ2 4685721 YP_973746.1 CDS Pnap_4942 NC_008759.1 141567 141950 D PFAM: Lipocalin family protein; KEGG: bbr:BB4561 outer membrane lipoprotein; Lipocalin family protein 141567..141950 Polaromonas naphthalenivorans CJ2 4685788 YP_973747.1 CDS Pnap_4943 NC_008759.1 142007 142117 D hypothetical protein 142007..142117 Polaromonas naphthalenivorans CJ2 4685717 YP_973748.1 CDS Pnap_4944 NC_008759.1 142355 142687 D PFAM: protein of unknown function UPF0060; KEGG: rso:RS05320 probable transmembrane protein; hypothetical protein 142355..142687 Polaromonas naphthalenivorans CJ2 4685718 YP_973749.1 CDS Pnap_4945 NC_008759.1 142850 143791 D KEGG: plt:Plut_0984 hypothetical protein; hypothetical protein 142850..143791 Polaromonas naphthalenivorans CJ2 4685805 YP_973750.1 CDS Pnap_4946 NC_008759.1 143958 144230 D PFAM: protein of unknown function DUF1272; KEGG: bcn:Bcen_2053 protein of unknown function DUF1272; hypothetical protein 143958..144230 Polaromonas naphthalenivorans CJ2 4685806 YP_973751.1 CDS Pnap_4947 NC_008759.1 144385 144930 R PFAM: 17 kDa surface antigen; KEGG: rso:RSc1027 probable transmembrane protein; 17 kDa surface antigen complement(144385..144930) Polaromonas naphthalenivorans CJ2 4685795 YP_973752.1 CDS Pnap_4948 NC_008759.1 145208 145828 D PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1421 thiopurine S-methyltransferase; thiopurine S-methyltransferase 145208..145828 Polaromonas naphthalenivorans CJ2 4685796 YP_973753.1 CDS Pnap_4949 NC_008759.1 145825 146178 D KEGG: vvy:VV1848 hypothetical protein; hypothetical protein 145825..146178 Polaromonas naphthalenivorans CJ2 4685751 YP_973754.1 CDS Pnap_4950 NC_008759.1 146667 146858 D KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 146667..146858 Polaromonas naphthalenivorans CJ2 4685752 YP_973755.1 CDS Pnap_4951 NC_008759.1 146891 147289 D KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 146891..147289 Polaromonas naphthalenivorans CJ2 4685707 YP_973756.1 CDS Pnap_4952 NC_008759.1 147234 147560 D KEGG: eba:ebA6355 transposase, IS4 family; IS4 family transposase 147234..147560 Polaromonas naphthalenivorans CJ2 4685708 YP_973757.1 CDS Pnap_4954 NC_008759.1 148390 148899 D KEGG: xac:XAC1911 hypothetical protein; hypothetical protein 148390..148899 Polaromonas naphthalenivorans CJ2 4685787 YP_973758.1 CDS Pnap_4955 NC_008759.1 148844 149683 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: xac:XAC1912 serine/threonine kinase; protein kinase 148844..149683 Polaromonas naphthalenivorans CJ2 4685780 YP_973759.1 CDS Pnap_4956 NC_008759.1 149694 150842 D KEGG: xac:XAC1913 hypothetical protein; hypothetical protein 149694..150842 Polaromonas naphthalenivorans CJ2 4685705 YP_973760.1 CDS Pnap_4957 NC_008759.1 151158 152231 D hypothetical protein 151158..152231 Polaromonas naphthalenivorans CJ2 4685706 YP_973761.1 CDS Pnap_4958 NC_008759.1 152272 152757 R hypothetical protein complement(152272..152757) Polaromonas naphthalenivorans CJ2 4685799 YP_973762.1 CDS Pnap_4959 NC_008759.1 153173 154750 R KEGG: bpm:BURPS1710b_0788 hypothetical protein; hypothetical protein complement(153173..154750) Polaromonas naphthalenivorans CJ2 4685800 YP_973763.1 CDS Pnap_4960 NC_008759.1 154791 155435 R KEGG: reu:Reut_C6015 hypothetical protein; hypothetical protein complement(154791..155435) Polaromonas naphthalenivorans CJ2 4685700 YP_973764.1 CDS Pnap_4961 NC_008759.1 155436 158180 R PFAM: UvrD/REP helicase; DNA topoisomerase, type IA, zn finger domain protein; KEGG: cps:CPS_2454 helicase IV; UvrD/REP helicase complement(155436..158180) Polaromonas naphthalenivorans CJ2 4685701 YP_973765.1 CDS Pnap_4962 NC_008759.1 158198 158662 R PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: gme:Gmet_1797 DNA topoisomerase I:restriction endonuclease; DNA topoisomerase type IA Zn finger domain-containing protein complement(158198..158662) Polaromonas naphthalenivorans CJ2 4685789 YP_973766.1 CDS Pnap_4963 NC_008759.1 158808 159566 D KEGG: pca:Pcar_0808 hypothetical protein; hypothetical protein 158808..159566 Polaromonas naphthalenivorans CJ2 4685790 YP_973767.1 CDS Pnap_4964 NC_008759.1 160251 161261 D hypothetical protein 160251..161261 Polaromonas naphthalenivorans CJ2 4685783 YP_973768.1 CDS Pnap_4965 NC_008759.1 161630 164164 R hypothetical protein complement(161630..164164) Polaromonas naphthalenivorans CJ2 4685784 YP_973769.1 CDS Pnap_4966 NC_008759.1 164161 165822 R hypothetical protein complement(164161..165822) Polaromonas naphthalenivorans CJ2 4685739 YP_973770.1 CDS Pnap_4967 NC_008759.1 166119 167438 R hypothetical protein complement(166119..167438) Polaromonas naphthalenivorans CJ2 4685740 YP_973771.1 CDS Pnap_4968 NC_008759.1 168156 168407 D hypothetical protein 168156..168407 Polaromonas naphthalenivorans CJ2 4685765 YP_973772.1 CDS Pnap_4969 NC_008759.1 168693 169091 D PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: bba:Bd0303 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor 168693..169091 Polaromonas naphthalenivorans CJ2 4685766 YP_973773.1 CDS Pnap_4970 NC_008759.1 169246 170190 D hypothetical protein 169246..170190 Polaromonas naphthalenivorans CJ2 4685791 YP_973774.1 CDS Pnap_4971 NC_008759.1 170407 170754 D hypothetical protein 170407..170754 Polaromonas naphthalenivorans CJ2 4685792 YP_973775.1 CDS Pnap_4611 NC_008760.1 206 1255 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3827 uncharacterized protein UPF0065; hypothetical protein 206..1255 Polaromonas naphthalenivorans CJ2 4685956 YP_973776.1 CDS Pnap_4612 NC_008760.1 1252 1425 D KEGG: pol:Bpro_3826 amidase; hypothetical protein 1252..1425 Polaromonas naphthalenivorans CJ2 4685813 YP_973777.1 CDS Pnap_4613 NC_008760.1 1595 2566 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A2914 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(1595..2566) Polaromonas naphthalenivorans CJ2 4685814 YP_973778.1 CDS Pnap_4614 NC_008760.1 2676 4043 D catalyzes the formation of pyruvate from serine; D-serine dehydratase 2676..4043 Polaromonas naphthalenivorans CJ2 4685815 YP_973779.1 CDS Pnap_4615 NC_008760.1 4080 5042 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1657 hypothetical protein; hypothetical protein 4080..5042 Polaromonas naphthalenivorans CJ2 4685816 YP_973780.1 CDS Pnap_4617 NC_008760.1 6239 7759 D PFAM: Amidase; KEGG: pol:Bpro_3826 amidase; amidase 6239..7759 Polaromonas naphthalenivorans CJ2 4685949 YP_973781.1 CDS Pnap_4618 NC_008760.1 8170 8457 R hypothetical protein complement(8170..8457) Polaromonas naphthalenivorans CJ2 4685818 YP_973782.1 CDS Pnap_4619 NC_008760.1 8668 8961 R KEGG: pca:Pcar_0528 hypothetical protein; hypothetical protein complement(8668..8961) Polaromonas naphthalenivorans CJ2 4685819 YP_973783.1 CDS Pnap_4620 NC_008760.1 8966 9190 R KEGG: vvu:VV10111 hypothetical protein; hypothetical protein complement(8966..9190) Polaromonas naphthalenivorans CJ2 4685820 YP_973784.1 CDS Pnap_4621 NC_008760.1 9497 10084 R KEGG: bxe:Bxe_C0670 putative transposase; hypothetical protein complement(9497..10084) Polaromonas naphthalenivorans CJ2 4685821 YP_973785.1 CDS Pnap_4622 NC_008760.1 10265 10789 R PFAM: regulatory protein, MarR; KEGG: pol:Bpro_1907 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(10265..10789) Polaromonas naphthalenivorans CJ2 4685822 YP_973786.1 CDS Pnap_4623 NC_008760.1 11157 12359 R PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pol:Bpro_1908 oxidoreductase-like; oxidoreductase domain-containing protein complement(11157..12359) Polaromonas naphthalenivorans CJ2 4685823 YP_973787.1 CDS Pnap_4624 NC_008760.1 12359 13327 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_1909 ferredoxin; ferredoxin complement(12359..13327) Polaromonas naphthalenivorans CJ2 4685824 YP_973788.1 CDS Pnap_4625 NC_008760.1 13367 14350 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1911 uncharacterized protein UPF0065; hypothetical protein complement(13367..14350) Polaromonas naphthalenivorans CJ2 4685825 YP_973789.1 CDS Pnap_4626 NC_008760.1 14401 15390 R KEGG: bpe:BP0683 4,5-dihydroxyphthalate decarboxylase; 4,5-dihydroxyphthalate decarboxylase complement(14401..15390) Polaromonas naphthalenivorans CJ2 4685826 YP_973790.1 CDS Pnap_4627 NC_008760.1 15393 16646 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_1910 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(15393..16646) Polaromonas naphthalenivorans CJ2 4685827 YP_973791.1 CDS Pnap_4628 NC_008760.1 16736 17203 R TIGRFAM: hemerythrin-like metal-binding protein; KEGG: dar:Daro_2762 hemerythrin HHE cation binding region; hemerythrin-like metal-binding protein complement(16736..17203) Polaromonas naphthalenivorans CJ2 4685828 YP_973792.1 CDS Pnap_4629 NC_008760.1 17550 17975 D hypothetical protein 17550..17975 Polaromonas naphthalenivorans CJ2 4685829 YP_973793.1 CDS Pnap_4630 NC_008760.1 18006 18986 R PFAM: transposase, IS4 family protein; KEGG: mhu:Mhun_3123 transposase, IS4; transposase, IS4 family protein complement(18006..18986) Polaromonas naphthalenivorans CJ2 4685830 YP_973794.1 CDS Pnap_4632 NC_008760.1 19862 20719 D KEGG: rfr:Rfer_1318 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 19862..20719 Polaromonas naphthalenivorans CJ2 4685950 YP_973795.1 CDS Pnap_4633 NC_008760.1 20814 21116 D KEGG: pol:Bpro_5546 hypothetical protein; hypothetical protein 20814..21116 Polaromonas naphthalenivorans CJ2 4685832 YP_973796.1 CDS Pnap_4634 NC_008760.1 21119 21520 D PFAM: helix-turn-helix domain protein; KEGG: pol:Bpro_5547 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 21119..21520 Polaromonas naphthalenivorans CJ2 4685833 YP_973797.1 CDS Pnap_4637 NC_008760.1 25476 27233 R hypothetical protein complement(25476..27233) Polaromonas naphthalenivorans CJ2 4685835 YP_973798.1 CDS Pnap_4638 NC_008760.1 27252 27452 R KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 complement(27252..27452) Polaromonas naphthalenivorans CJ2 4685836 YP_973799.1 CDS Pnap_4640 NC_008760.1 27967 30036 D PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; Recombinase; KEGG: ret:RHE_PA00038 probable insertion sequence transposase protein; recombinase 27967..30036 Polaromonas naphthalenivorans CJ2 4685951 YP_973800.1 CDS Pnap_4641 NC_008760.1 30049 31482 R PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 complement(30049..31482) Polaromonas naphthalenivorans CJ2 4685838 YP_973801.1 CDS Pnap_4642 NC_008760.1 32075 33031 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 32075..33031 Polaromonas naphthalenivorans CJ2 4685839 YP_973802.1 CDS Pnap_4643 NC_008760.1 33025 33267 D KEGG: eba:ebA6355 transposase, IS4 family; hypothetical protein 33025..33267 Polaromonas naphthalenivorans CJ2 4685840 YP_973803.1 CDS Pnap_4644 NC_008760.1 33334 34617 R PFAM: stress protein; SMART: von Willebrand factor, type A; KEGG: psp:PSPPH_0839 tellurium resistance protein, putative; stress protein complement(33334..34617) Polaromonas naphthalenivorans CJ2 4685841 YP_973804.1 CDS Pnap_4645 NC_008760.1 35121 35540 R KEGG: xom:XOO_1971 ISXo3 transposase orfB; hypothetical protein complement(35121..35540) Polaromonas naphthalenivorans CJ2 4685842 YP_973805.1 CDS Pnap_4646 NC_008760.1 35589 35774 R KEGG: rso:RSp1136 ISRSO18-transposase protein; hypothetical protein complement(35589..35774) Polaromonas naphthalenivorans CJ2 4685843 YP_973806.1 CDS Pnap_4647 NC_008760.1 35810 37090 D PFAM: transposase, IS4 family protein; KEGG: rso:RSp0584 ISRSO9-transposase protein; transposase, IS4 family protein 35810..37090 Polaromonas naphthalenivorans CJ2 4685844 YP_973807.1 CDS Pnap_4648 NC_008760.1 37056 37760 R PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein complement(37056..37760) Polaromonas naphthalenivorans CJ2 4685845 YP_973808.1 CDS Pnap_4649 NC_008760.1 37863 38474 R KEGG: xcb:XC_0858 IS1477 transposase; IS1477 transposase complement(37863..38474) Polaromonas naphthalenivorans CJ2 4685846 YP_973809.1 CDS Pnap_4650 NC_008760.1 38507 38773 R PFAM: transposase IS3/IS911 family protein; KEGG: bpm:BURPS1710b_A1167 IS407A, transposase OrfA; transposase IS3/IS911 family protein complement(38507..38773) Polaromonas naphthalenivorans CJ2 4685847 YP_973810.1 CDS Pnap_4651 NC_008760.1 38842 39147 R hypothetical protein complement(38842..39147) Polaromonas naphthalenivorans CJ2 4685848 YP_973811.1 CDS Pnap_4652 NC_008760.1 39299 40243 D KEGG: bxe:Bxe_A4308 hypothetical protein; hypothetical protein 39299..40243 Polaromonas naphthalenivorans CJ2 4685849 YP_973812.1 CDS Pnap_4653 NC_008760.1 40447 41526 D PFAM: protein of unknown function DUF475; KEGG: tdn:Tmden_1846 protein of unknown function DUF475; hypothetical protein 40447..41526 Polaromonas naphthalenivorans CJ2 4685850 YP_973813.1 CDS Pnap_4654 NC_008760.1 41568 42146 D PFAM: stress protein; KEGG: eba:p1B317 protein involved in tellurite resistance; stress protein 41568..42146 Polaromonas naphthalenivorans CJ2 4685851 YP_973814.1 CDS Pnap_4655 NC_008760.1 42183 42758 D PFAM: stress protein; KEGG: eba:p1B315 protein involved in tellurite resistance; stress protein 42183..42758 Polaromonas naphthalenivorans CJ2 4685852 YP_973815.1 CDS Pnap_4657 NC_008760.1 43355 43936 D PFAM: stress protein; KEGG: eba:p1B312 tellurium resistance protein; stress protein 43355..43936 Polaromonas naphthalenivorans CJ2 4685952 YP_973816.1 CDS Pnap_4658 NC_008760.1 43944 44963 D PFAM: protein of unknown function DUF201; KEGG: eba:p1B310 hypothetical protein; hypothetical protein 43944..44963 Polaromonas naphthalenivorans CJ2 4685854 YP_973817.1 CDS Pnap_4659 NC_008760.1 45017 46171 D KEGG: eba:p1B308 hypothetical protein; hypothetical protein 45017..46171 Polaromonas naphthalenivorans CJ2 4685855 YP_973818.1 CDS Pnap_4660 NC_008760.1 46149 46904 D KEGG: eba:p1B307 hypothetical protein; hypothetical protein 46149..46904 Polaromonas naphthalenivorans CJ2 4685856 YP_973819.1 CDS Pnap_4661 NC_008760.1 46901 47992 D KEGG: eba:p1B306 hypothetical protein; hypothetical protein 46901..47992 Polaromonas naphthalenivorans CJ2 4685857 YP_973820.1 CDS Pnap_4662 NC_008760.1 47985 48932 D KEGG: eba:p1B303 predicted ATP/GTP-binding protein; ATP/GTP-binding protein 47985..48932 Polaromonas naphthalenivorans CJ2 4685858 YP_973821.1 CDS Pnap_4663 NC_008760.1 48977 50191 D PFAM: stress protein; KEGG: eba:p1B301 tellurium resistance protein; stress protein 48977..50191 Polaromonas naphthalenivorans CJ2 4685859 YP_973822.1 CDS Pnap_4664 NC_008760.1 50202 51701 R SMART: serine/threonine protein kinase; KEGG: aci:ACIAD1964 conserved hypothetical protein; putative protein kinase; serine/threonine protein kinase complement(50202..51701) Polaromonas naphthalenivorans CJ2 4685860 YP_973823.1 CDS Pnap_4665 NC_008760.1 51798 53528 R KEGG: yps:YPTB3466 hypothetical protein; hypothetical protein complement(51798..53528) Polaromonas naphthalenivorans CJ2 4685861 YP_973824.1 CDS Pnap_4666 NC_008760.1 53531 54583 R PFAM: von Willebrand factor, type A; KEGG: yps:YPTB3465 hypothetical protein; von Willebrand factor, type A complement(53531..54583) Polaromonas naphthalenivorans CJ2 4685862 YP_973825.1 CDS Pnap_4667 NC_008760.1 54668 55309 R PFAM: von Willebrand factor, type A; KEGG: aci:ACIAD1967 putative tellurium resistance protein (TerY-like); von Willebrand factor, type A complement(54668..55309) Polaromonas naphthalenivorans CJ2 4685863 YP_973826.1 CDS Pnap_4668 NC_008760.1 55316 55957 R PFAM: stress protein; KEGG: aci:ACIAD1968 tellurium resistance protein; stress protein complement(55316..55957) Polaromonas naphthalenivorans CJ2 4685864 YP_973827.1 CDS Pnap_4669 NC_008760.1 55970 56608 R PFAM: von Willebrand factor, type A; KEGG: aci:ACIAD1969 tellurium resistance protein; von Willebrand factor, type A complement(55970..56608) Polaromonas naphthalenivorans CJ2 4685865 YP_973828.1 CDS Pnap_4670 NC_008760.1 56855 57163 R hypothetical protein complement(56855..57163) Polaromonas naphthalenivorans CJ2 4685866 YP_973829.1 CDS Pnap_4671 NC_008760.1 57275 57910 R KEGG: sde:Sde_3789 hypothetical protein; hypothetical protein complement(57275..57910) Polaromonas naphthalenivorans CJ2 4685867 YP_973830.1 CDS Pnap_4672 NC_008760.1 57907 58269 R KEGG: sde:Sde_3788 hypothetical protein; hypothetical protein complement(57907..58269) Polaromonas naphthalenivorans CJ2 4685868 YP_973831.1 CDS Pnap_4673 NC_008760.1 58280 58612 R hypothetical protein complement(58280..58612) Polaromonas naphthalenivorans CJ2 4685869 YP_973832.1 CDS Pnap_4674 NC_008760.1 58612 59625 R PFAM: Curli production assembly/transport component CsgG; KEGG: sde:Sde_3786 uncharacterized protein involved in formation of curli polymers-like; curli production assembly/transport component CsgG complement(58612..59625) Polaromonas naphthalenivorans CJ2 4685870 YP_973833.1 CDS Pnap_4675 NC_008760.1 59744 60235 R KEGG: rme:Rmet_5344 hypothetical protein; hypothetical protein complement(59744..60235) Polaromonas naphthalenivorans CJ2 4685871 YP_973834.1 CDS Pnap_4676 NC_008760.1 60390 60749 D KEGG: rme:Rmet_5343 hypothetical protein; hypothetical protein 60390..60749 Polaromonas naphthalenivorans CJ2 4685872 YP_973835.1 CDS Pnap_4677 NC_008760.1 60764 61114 R PFAM: transposase, IS4 family protein; KEGG: neu:NE2446 transposase IS4 family; transposase, IS4 family protein complement(60764..61114) Polaromonas naphthalenivorans CJ2 4685873 YP_973836.1 CDS Pnap_4679 NC_008760.1 61667 61933 D KEGG: dar:Daro_1366 hypothetical protein; hypothetical protein 61667..61933 Polaromonas naphthalenivorans CJ2 4685953 YP_973837.1 CDS Pnap_4680 NC_008760.1 62434 62937 D KEGG: reu:Reut_A0258 hypothetical protein; hypothetical protein 62434..62937 Polaromonas naphthalenivorans CJ2 4685875 YP_973838.1 CDS Pnap_4681 NC_008760.1 63330 63785 D hypothetical protein 63330..63785 Polaromonas naphthalenivorans CJ2 4685876 YP_973839.1 CDS Pnap_4682 NC_008760.1 63782 64255 D hypothetical protein 63782..64255 Polaromonas naphthalenivorans CJ2 4685877 YP_973840.1 CDS Pnap_4683 NC_008760.1 64442 64915 D hypothetical protein 64442..64915 Polaromonas naphthalenivorans CJ2 4685878 YP_973841.1 CDS Pnap_4684 NC_008760.1 64908 65852 D PFAM: ADP-ribosylation/Crystallin J1; KEGG: pfo:Pfl_3893 ADP-ribosylation/crystallin J1; ADP-ribosyl-(dinitrogen reductase) hydrolase 64908..65852 Polaromonas naphthalenivorans CJ2 4685879 YP_973842.1 CDS Pnap_4685 NC_008760.1 65962 66531 D KEGG: gme:Gmet_0792 hypothetical protein; hypothetical protein 65962..66531 Polaromonas naphthalenivorans CJ2 4685880 YP_973843.1 CDS Pnap_4686 NC_008760.1 66643 67548 R PFAM: TniB family protein; KEGG: bcn:Bcen_4904 TniB; TniB family protein complement(66643..67548) Polaromonas naphthalenivorans CJ2 4685881 YP_973844.1 CDS Pnap_4687 NC_008760.1 67549 68055 R KEGG: nha:Nham_4579 integrase, catalytic region; integrase, catalytic region complement(67549..68055) Polaromonas naphthalenivorans CJ2 4685882 YP_973845.1 CDS Pnap_4688 NC_008760.1 68146 69294 R PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region; integrase catalytic subunit complement(68146..69294) Polaromonas naphthalenivorans CJ2 4685883 YP_973846.1 CDS Pnap_4689 NC_008760.1 69633 70439 D hypothetical protein 69633..70439 Polaromonas naphthalenivorans CJ2 4685884 YP_973847.1 CDS Pnap_4690 NC_008760.1 70526 70747 R PFAM: protein of unknown function DUF465; KEGG: cvi:CV3311 hypothetical protein; hypothetical protein complement(70526..70747) Polaromonas naphthalenivorans CJ2 4685885 YP_973848.1 CDS Pnap_4691 NC_008760.1 71222 73051 D PFAM: phage integrase family protein; KEGG: rme:Rmet_6086 phage integrase; phage integrase family protein 71222..73051 Polaromonas naphthalenivorans CJ2 4685886 YP_973849.1 CDS Pnap_4692 NC_008760.1 73475 74488 R TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: xcv:XCVd0002 replication protein B; parB-like partition proteins complement(73475..74488) Polaromonas naphthalenivorans CJ2 4685887 YP_973850.1 CDS Pnap_4693 NC_008760.1 74464 75657 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: eba:p2A292 partitioning protein, ParA; cobyrinic acid a,c-diamide synthase complement(74464..75657) Polaromonas naphthalenivorans CJ2 4685888 YP_973851.1 CDS Pnap_4694 NC_008760.1 76069 77499 D PFAM: initiator RepB protein; KEGG: bcn:Bcen_5164 hypothetical protein; initiator RepB protein 76069..77499 Polaromonas naphthalenivorans CJ2 4685889 YP_973852.1 CDS Pnap_4695 NC_008760.1 77991 78503 R hypothetical protein complement(77991..78503) Polaromonas naphthalenivorans CJ2 4685890 YP_973853.1 CDS Pnap_4696 NC_008760.1 78617 79819 D PFAM: beta-lactamase domain protein; KEGG: reu:Reut_B4274 beta-lactamase-like; beta-lactamase domain-containing protein 78617..79819 Polaromonas naphthalenivorans CJ2 4685891 YP_973854.1 CDS Pnap_4697 NC_008760.1 80148 80435 D hypothetical protein 80148..80435 Polaromonas naphthalenivorans CJ2 4685892 YP_973855.1 CDS Pnap_4698 NC_008760.1 80432 81538 D TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: nar:Saro_0133 ParB-like partition proteins; parB-like partition proteins 80432..81538 Polaromonas naphthalenivorans CJ2 4685893 YP_973856.1 CDS Pnap_4700 NC_008760.1 83264 84334 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 83264..84334 Polaromonas naphthalenivorans CJ2 4685954 YP_973857.1 CDS Pnap_4702 NC_008760.1 84547 84747 R KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 complement(84547..84747) Polaromonas naphthalenivorans CJ2 4685955 YP_973858.1 CDS Pnap_4704 NC_008760.1 85262 87331 D PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; Recombinase; KEGG: ret:RHE_PA00038 probable insertion sequence transposase protein; recombinase 85262..87331 Polaromonas naphthalenivorans CJ2 4685957 YP_973859.1 CDS Pnap_4705 NC_008760.1 87344 88750 R PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 complement(87344..88750) Polaromonas naphthalenivorans CJ2 4685897 YP_973860.1 CDS Pnap_4706 NC_008760.1 88833 89174 R PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_3060 IS66 Orf2 like; IS66 Orf2 family protein complement(88833..89174) Polaromonas naphthalenivorans CJ2 4685898 YP_973861.1 CDS Pnap_4707 NC_008760.1 89171 89563 R PFAM: transposase IS3/IS911 family protein; KEGG: hypothetical protein; transposase IS3/IS911 family protein complement(89171..89563) Polaromonas naphthalenivorans CJ2 4685899 YP_973862.1 CDS Pnap_4708 NC_008760.1 89634 89930 D PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 89634..89930 Polaromonas naphthalenivorans CJ2 4685900 YP_973863.1 CDS Pnap_4709 NC_008760.1 90013 91506 D PFAM: transposase IS66; KEGG: bxe:Bxe_A2416 transposase ISPpu14 orf3 like, IS66 family; transposase IS66 90013..91506 Polaromonas naphthalenivorans CJ2 4685901 YP_973864.1 CDS Pnap_4710 NC_008760.1 91671 92828 D KEGG: ana:alr5232 unknown protein; hypothetical protein 91671..92828 Polaromonas naphthalenivorans CJ2 4685902 YP_973865.1 CDS Pnap_4711 NC_008760.1 92961 93977 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_5572 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 92961..93977 Polaromonas naphthalenivorans CJ2 4685903 YP_973866.1 CDS Pnap_4712 NC_008760.1 94695 95765 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_2845 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(94695..95765) Polaromonas naphthalenivorans CJ2 4685904 YP_973867.1 CDS Pnap_4714 NC_008760.1 97342 98019 D hypothetical protein 97342..98019 Polaromonas naphthalenivorans CJ2 4685958 YP_973868.1 CDS Pnap_4715 NC_008760.1 98166 98402 D KEGG: bur:Bcep18194_A3351 histone-like nucleoid-structuring protein H-NS; hypothetical protein 98166..98402 Polaromonas naphthalenivorans CJ2 4685906 YP_973869.1 CDS Pnap_4716 NC_008760.1 98742 99356 R PFAM: protein of unknown function DUF1326; KEGG: mlo:mll4476 hypothetical protein; hypothetical protein complement(98742..99356) Polaromonas naphthalenivorans CJ2 4685907 YP_973870.1 CDS Pnap_4717 NC_008760.1 99489 100283 D KEGG: pol:Bpro_1844 hypothetical protein; hypothetical protein 99489..100283 Polaromonas naphthalenivorans CJ2 4685908 YP_973871.1 CDS Pnap_4718 NC_008760.1 100462 100899 R PFAM: UspA domain protein; KEGG: rfr:Rfer_2826 UspA; UspA domain-containing protein complement(100462..100899) Polaromonas naphthalenivorans CJ2 4685909 YP_973872.1 CDS Pnap_4719 NC_008760.1 100931 101047 R PFAM: protein of unknown function DUF1458; KEGG: pol:Bpro_0507 protein of unknown function DUF1458; hypothetical protein complement(100931..101047) Polaromonas naphthalenivorans CJ2 4685910 YP_973873.1 CDS Pnap_4720 NC_008760.1 101362 101760 D KEGG: bxe:Bxe_A3008 hypothetical protein; hypothetical protein 101362..101760 Polaromonas naphthalenivorans CJ2 4685911 YP_973874.1 CDS Pnap_4721 NC_008760.1 102528 104099 R PFAM: FAD dependent oxidoreductase; KEGG: sme:SMb20991 conserved hypothetical protein, similar to Y20992, slightly similar to monooxygenase; FAD dependent oxidoreductase complement(102528..104099) Polaromonas naphthalenivorans CJ2 4685912 YP_973875.1 CDS Pnap_4722 NC_008760.1 104435 104677 R PFAM: phage Tail Collar domain protein; KEGG: pen:PSEEN0745 phage tail collar; phage tail collar domain-containing protein complement(104435..104677) Polaromonas naphthalenivorans CJ2 4685913 YP_973876.1 CDS Pnap_4723 NC_008760.1 104745 104939 R KEGG: ana:alr9024 transposase; transposase complement(104745..104939) Polaromonas naphthalenivorans CJ2 4685914 YP_973877.1 CDS Pnap_4724 NC_008760.1 105302 105964 R KEGG: mma:MM3344 transposase; transposase complement(105302..105964) Polaromonas naphthalenivorans CJ2 4685915 YP_973878.1 CDS Pnap_4725 NC_008760.1 105961 106434 R KEGG: mma:MM3343 transposase; transposase complement(105961..106434) Polaromonas naphthalenivorans CJ2 4685916 YP_973879.1 CDS Pnap_4726 NC_008760.1 106744 107763 D KEGG: bxe:Bxe_A4308 hypothetical protein; hypothetical protein 106744..107763 Polaromonas naphthalenivorans CJ2 4685917 YP_973880.1 CDS Pnap_4727 NC_008760.1 108201 108569 D KEGG: gvi:gll2960 hypothetical protein; hypothetical protein 108201..108569 Polaromonas naphthalenivorans CJ2 4685918 YP_973881.1 CDS Pnap_4728 NC_008760.1 108970 109374 D PFAM: protein of unknown function DUF1486; KEGG: eba:ebA463 hypothetical protein; hypothetical protein 108970..109374 Polaromonas naphthalenivorans CJ2 4685919 YP_973882.1 CDS Pnap_4729 NC_008760.1 109715 111052 R KEGG: sgl:SG2354 hypothetical protein; hypothetical protein complement(109715..111052) Polaromonas naphthalenivorans CJ2 4685920 YP_973883.1 CDS Pnap_4730 NC_008760.1 111604 111969 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pol:Bpro_3984 histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 111604..111969 Polaromonas naphthalenivorans CJ2 4685921 YP_973884.1 CDS Pnap_4731 NC_008760.1 112857 113309 D PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 112857..113309 Polaromonas naphthalenivorans CJ2 4685959 YP_973885.1 CDS Pnap_4732 NC_008760.1 113643 114518 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sal:Sala_1100 glutathione S-transferase-like protein; glutathione S-transferase domain-containing protein 113643..114518 Polaromonas naphthalenivorans CJ2 4685923 YP_973886.1 CDS Pnap_4733 NC_008760.1 114574 115206 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sil:SPO0563 glutathione S-transferase, putative; glutathione S-transferase domain-containing protein 114574..115206 Polaromonas naphthalenivorans CJ2 4685924 YP_973887.1 CDS Pnap_4734 NC_008760.1 115396 115755 D hypothetical protein 115396..115755 Polaromonas naphthalenivorans CJ2 4685925 YP_973888.1 CDS Pnap_4735 NC_008760.1 115959 117353 R PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_C0670 putative transposase; integrase catalytic subunit complement(115959..117353) Polaromonas naphthalenivorans CJ2 4685926 YP_973889.1 CDS Pnap_4736 NC_008760.1 117479 118054 R KEGG: rba:RB10556 hypothetical protein-signal peptide prediction; hypothetical protein complement(117479..118054) Polaromonas naphthalenivorans CJ2 4685927 YP_973890.1 CDS Pnap_4737 NC_008760.1 118166 120811 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bxe:Bxe_A0918 excinuclease ABC, A subunit; excinuclease ABC, A subunit complement(118166..120811) Polaromonas naphthalenivorans CJ2 4685928 YP_973891.1 CDS Pnap_4738 NC_008760.1 121179 122066 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: reu:Reut_B4855 protein of unknown function DUF6, transmembrane; hypothetical protein complement(121179..122066) Polaromonas naphthalenivorans CJ2 4685929 YP_973892.1 CDS Pnap_4739 NC_008760.1 122648 122797 R hypothetical protein complement(122648..122797) Polaromonas naphthalenivorans CJ2 4685930 YP_973893.1 CDS Pnap_4740 NC_008760.1 122894 123970 D KEGG: bja:blr1916 putative transposase; putative transposase 122894..123970 Polaromonas naphthalenivorans CJ2 4685931 YP_973894.1 CDS Pnap_4741 NC_008760.1 124482 125465 D PFAM: putative transposase; KEGG: sfx:S2705 putative transposase; putative transposase 124482..125465 Polaromonas naphthalenivorans CJ2 4685932 YP_973895.1 CDS Pnap_4742 NC_008760.1 125630 126475 D PFAM: regulatory proteins, IclR; KEGG: rme:Rmet_0082 transcriptional regulator, IclR family; regulatory proteins, IclR 125630..126475 Polaromonas naphthalenivorans CJ2 4685933 YP_973896.1 CDS Pnap_4743 NC_008760.1 126592 127617 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rso:RSc1823 probable nitrilase protein; Nitrilase 126592..127617 Polaromonas naphthalenivorans CJ2 4685934 YP_973897.1 CDS Pnap_4744 NC_008760.1 127663 128835 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_1622 extracellular ligand-binding receptor; extracellular ligand-binding receptor 127663..128835 Polaromonas naphthalenivorans CJ2 4685935 YP_973898.1 CDS Pnap_4745 NC_008760.1 128937 129800 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_1621 inner-membrane translocator; inner-membrane translocator 128937..129800 Polaromonas naphthalenivorans CJ2 4685936 YP_973899.1 CDS Pnap_4746 NC_008760.1 129850 130872 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_1620 inner-membrane translocator; inner-membrane translocator 129850..130872 Polaromonas naphthalenivorans CJ2 4685937 YP_973900.1 CDS Pnap_4747 NC_008760.1 130865 131626 D PFAM: ABC transporter related; KEGG: pol:Bpro_2988 ABC transporter related; ABC transporter related 130865..131626 Polaromonas naphthalenivorans CJ2 4685938 YP_973901.1 CDS Pnap_4748 NC_008760.1 131719 132432 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1618 ABC transporter related; ABC transporter related 131719..132432 Polaromonas naphthalenivorans CJ2 4685939 YP_973902.1 CDS Pnap_4749 NC_008760.1 132559 132969 R KEGG: nmu:Nmul_A0376 tetratricopeptide TPR_4; hypothetical protein complement(132559..132969) Polaromonas naphthalenivorans CJ2 4685940 YP_973903.1 CDS Pnap_4750 NC_008760.1 133049 133330 R KEGG: ppr:PBPRA0512 putative transposase; putative transposase complement(133049..133330) Polaromonas naphthalenivorans CJ2 4685941 YP_973904.1 CDS Pnap_4751 NC_008760.1 133591 134115 R KEGG: pol:Bpro_3862 hypothetical protein; hypothetical protein complement(133591..134115) Polaromonas naphthalenivorans CJ2 4685942 YP_973905.1 CDS Pnap_4752 NC_008760.1 134363 135688 R KEGG: sgl:SG2354 hypothetical protein; hypothetical protein complement(134363..135688) Polaromonas naphthalenivorans CJ2 4685943 YP_973906.1 CDS Pnap_4753 NC_008760.1 135818 135958 R PFAM: protein of unknown function DUF1458; KEGG: pol:Bpro_0507 protein of unknown function DUF1458; hypothetical protein complement(135818..135958) Polaromonas naphthalenivorans CJ2 4685944 YP_973907.1 CDS Pnap_4754 NC_008760.1 136243 137340 R PFAM: regulatory protein GntR, HTH; KEGG: bpa:BPP1291 putative GntR-family transcriptional regulator; GntR family transcriptional regulator complement(136243..137340) Polaromonas naphthalenivorans CJ2 4685945 YP_973908.1 CDS Pnap_4757 NC_008760.1 138953 141700 R paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 complement(138953..141700) Polaromonas naphthalenivorans CJ2 4685961 YP_973909.1 CDS Pnap_4758 NC_008760.1 141753 141968 D SMART: regulatory protein, AsnC/Lrp family; KEGG: bbr:BB3671 AsnC-family transcriptional regulator; AsnC family transcriptional regulator 141753..141968 Polaromonas naphthalenivorans CJ2 4685947 YP_973910.1 CDS Pnap_4759 NC_008760.1 142059 142523 R PFAM: regulatory protein, AsnC/Lrp family; regulatory protein, ArsR; KEGG: pol:Bpro_3829 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(142059..142523) Polaromonas naphthalenivorans CJ2 4685948 YP_973911.1 CDS Pnap_4760 NC_008761.1 1158 1565 D hypothetical protein 1158..1565 Polaromonas naphthalenivorans CJ2 4686002 YP_973912.1 CDS Pnap_4761 NC_008761.1 1583 2455 R KEGG: tcr:504239.220 mucin-associated surface protein (MASP) Pfam: Vicilin_N PROSITE: ALA_RICH CHEMOTAXIS_TRANSDUC_2; mucin-associated surface protein complement(1583..2455) Polaromonas naphthalenivorans CJ2 4685993 YP_973913.1 CDS Pnap_4762 NC_008761.1 3682 3879 D hypothetical protein 3682..3879 Polaromonas naphthalenivorans CJ2 4685994 YP_973914.1 CDS Pnap_4763 NC_008761.1 4046 4534 R KEGG: xac:XACb0027 hypothetical protein; hypothetical protein complement(4046..4534) Polaromonas naphthalenivorans CJ2 4685962 YP_973915.1 CDS Pnap_4764 NC_008761.1 4584 5000 R PFAM: PilT protein domain protein; KEGG: xfa:XF1589 plasmid stabilization protein; PilT domain-containing protein complement(4584..5000) Polaromonas naphthalenivorans CJ2 4685963 YP_973916.1 CDS Pnap_4765 NC_008761.1 4997 5251 R KEGG: xfa:XF1590 plasmid stabilization protein; plasmid stabilization protein complement(4997..5251) Polaromonas naphthalenivorans CJ2 4685964 YP_973917.1 CDS Pnap_4766 NC_008761.1 5451 5756 D KEGG: pol:Bpro_3013 hypothetical protein; hypothetical protein 5451..5756 Polaromonas naphthalenivorans CJ2 4685987 YP_973918.1 CDS Pnap_4767 NC_008761.1 5856 6098 R PFAM: phage Tail Collar domain protein; KEGG: ana:alr4706 unknown protein; phage tail collar domain-containing protein complement(5856..6098) Polaromonas naphthalenivorans CJ2 4685988 YP_973919.1 CDS Pnap_4768 NC_008761.1 6621 7325 D KEGG: rme:Rmet_3749 hypothetical protein; hypothetical protein 6621..7325 Polaromonas naphthalenivorans CJ2 4685989 YP_973920.1 CDS Pnap_4769 NC_008761.1 7325 7567 D KEGG: psp:PSPPH_B0059 ExeA-like protein; ExeA-like protein 7325..7567 Polaromonas naphthalenivorans CJ2 4685968 YP_973921.1 CDS Pnap_4770 NC_008761.1 7747 8313 D KEGG: xac:XAC2430 Tn5044 transposase; Tn5044 transposase 7747..8313 Polaromonas naphthalenivorans CJ2 4685969 YP_973922.1 CDS Pnap_4771 NC_008761.1 8670 9197 R hypothetical protein complement(8670..9197) Polaromonas naphthalenivorans CJ2 4685970 YP_973923.1 CDS Pnap_4772 NC_008761.1 9239 10309 R KEGG: cvi:CV0729 poly (3-hydroxybutyrate) depolymerase; poly (3-hydroxybutyrate) depolymerase complement(9239..10309) Polaromonas naphthalenivorans CJ2 4685975 YP_973924.1 CDS Pnap_4773 NC_008761.1 10458 10760 R hypothetical protein complement(10458..10760) Polaromonas naphthalenivorans CJ2 4685976 YP_973925.1 CDS Pnap_4774 NC_008761.1 11708 12745 R PFAM: TrfA family protein; KEGG: gsu:GSU2175 TrfA-related protein; TrfA family protein complement(11708..12745) Polaromonas naphthalenivorans CJ2 4685977 YP_973926.1 CDS Pnap_4775 NC_008761.1 12820 13128 R KEGG: xcv:XCVc0004 hypothetical protein; hypothetical protein complement(12820..13128) Polaromonas naphthalenivorans CJ2 4686006 YP_973927.1 CDS Pnap_4776 NC_008761.1 13125 13754 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: xcv:XCVc0005 putative partition protein; cobyrinic acid a,c-diamide synthase complement(13125..13754) Polaromonas naphthalenivorans CJ2 4686007 YP_973928.1 CDS Pnap_4777 NC_008761.1 14048 15601 D PFAM: N-6 DNA methylase; KEGG: pol:Bpro_1940 N-6 DNA methylase; N-6 DNA methylase 14048..15601 Polaromonas naphthalenivorans CJ2 4686008 YP_973929.1 CDS Pnap_4778 NC_008761.1 15591 16838 D PFAM: restriction modification system DNA specificity domain; KEGG: mca:MCA0836 type I restriction-modification system, S subunit, EcoA family; restriction modification system DNA specificity subunit 15591..16838 Polaromonas naphthalenivorans CJ2 4685995 YP_973930.1 CDS Pnap_4779 NC_008761.1 16835 17920 D PFAM: protein of unknown function DUF1016; KEGG: hypothetical protein; hypothetical protein 16835..17920 Polaromonas naphthalenivorans CJ2 4685996 YP_973931.1 CDS Pnap_4780 NC_008761.1 18013 18414 D PFAM: protein of unknown function DUF1311; KEGG: cvi:CV4287 hypothetical protein; hypothetical protein 18013..18414 Polaromonas naphthalenivorans CJ2 4685971 YP_973932.1 CDS Pnap_4781 NC_008761.1 18461 19348 D hypothetical protein 18461..19348 Polaromonas naphthalenivorans CJ2 4685972 YP_973933.1 CDS Pnap_4782 NC_008761.1 19345 22434 D KEGG: pol:Bpro_1944 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease 19345..22434 Polaromonas naphthalenivorans CJ2 4685973 YP_973934.1 CDS Pnap_4783 NC_008761.1 22591 23646 R KEGG: stt:t4254 hypothetical protein; hypothetical protein complement(22591..23646) Polaromonas naphthalenivorans CJ2 4685965 YP_973935.1 CDS Pnap_4784 NC_008761.1 23770 24048 R KEGG: psb:Psyr_3719 hypothetical protein; hypothetical protein complement(23770..24048) Polaromonas naphthalenivorans CJ2 4685966 YP_973936.1 CDS Pnap_4785 NC_008761.1 24090 24344 R KEGG: nwi:Nwi_0257 hypothetical protein; hypothetical protein complement(24090..24344) Polaromonas naphthalenivorans CJ2 4685967 YP_973937.1 CDS Pnap_4786 NC_008761.1 24402 24602 R KEGG: dvu:DVU1704 hypothetical protein; hypothetical protein complement(24402..24602) Polaromonas naphthalenivorans CJ2 4685984 YP_973938.1 CDS Pnap_4787 NC_008761.1 24931 25662 R PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; IstB ATP binding domain-containing protein complement(24931..25662) Polaromonas naphthalenivorans CJ2 4685985 YP_973939.1 CDS Pnap_4788 NC_008761.1 25704 27242 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit complement(25704..27242) Polaromonas naphthalenivorans CJ2 4685986 YP_973940.1 CDS Pnap_4789 NC_008761.1 27680 28204 D KEGG: rsp:RSP_4245 hypothetical protein; hypothetical protein 27680..28204 Polaromonas naphthalenivorans CJ2 4685997 YP_973941.1 CDS Pnap_4790 NC_008761.1 28201 28617 D KEGG: nha:Nham_1372 hypothetical protein; hypothetical protein 28201..28617 Polaromonas naphthalenivorans CJ2 4685998 YP_973942.1 CDS Pnap_4791 NC_008761.1 28607 29371 D PFAM: protein of unknown function DUF955; KEGG: rsp:RSP_4244 hypothetical protein; hypothetical protein 28607..29371 Polaromonas naphthalenivorans CJ2 4685999 YP_973943.1 CDS Pnap_4792 NC_008761.1 29627 30814 R PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: xcb:XC_2075 transcriptional regulator, HTH_3 family; hypothetical protein complement(29627..30814) Polaromonas naphthalenivorans CJ2 4685981 YP_973944.1 CDS Pnap_4793 NC_008761.1 30822 31463 R KEGG: hch:HCH_06284 hypothetical protein; hypothetical protein complement(30822..31463) Polaromonas naphthalenivorans CJ2 4685982 YP_973945.1 CDS Pnap_4794 NC_008761.1 31549 32130 R PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: ecs:ECs5249 putative resolvase; resolvase domain-containing protein complement(31549..32130) Polaromonas naphthalenivorans CJ2 4685983 YP_973946.1 CDS Pnap_4795 NC_008761.1 32650 38079 R KEGG: noc:Noc_0639 hypothetical protein; hypothetical protein complement(32650..38079) Polaromonas naphthalenivorans CJ2 4686012 YP_973947.1 CDS Pnap_4796 NC_008761.1 38473 38901 D KEGG: pfo:Pfl_4900 hypothetical protein; hypothetical protein 38473..38901 Polaromonas naphthalenivorans CJ2 4686013 YP_973948.1 CDS Pnap_4797 NC_008761.1 38898 39350 D KEGG: pfo:Pfl_4899 hypothetical protein; hypothetical protein 38898..39350 Polaromonas naphthalenivorans CJ2 4686014 YP_973949.1 CDS Pnap_4798 NC_008761.1 39355 40350 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: nmu:Nmul_A2012 phage integrase; phage integrase family protein 39355..40350 Polaromonas naphthalenivorans CJ2 4685990 YP_973950.1 CDS Pnap_4799 NC_008761.1 40363 41442 D PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 40363..41442 Polaromonas naphthalenivorans CJ2 4685991 YP_973951.1 CDS Pnap_4800 NC_008761.1 41897 49429 D PFAM: zinc finger, CHC2-family protein; KEGG: zmo:ZMO1622 DNA primase; zinc finger, CHC2-family protein 41897..49429 Polaromonas naphthalenivorans CJ2 4685992 YP_973952.1 CDS Pnap_4801 NC_008761.1 49675 51168 D PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5089 transposase, IS4; transposase, IS4 family protein 49675..51168 Polaromonas naphthalenivorans CJ2 4685978 YP_973953.1 CDS Pnap_4802 NC_008761.1 51354 51734 R PFAM: PilT protein domain protein; KEGG: pst:PSPTO_B0073 PIN domain protein; PilT domain-containing protein complement(51354..51734) Polaromonas naphthalenivorans CJ2 4685979 YP_973954.1 CDS Pnap_4803 NC_008761.1 51731 51937 R KEGG: plu:plu2369 hypothetical protein; hypothetical protein complement(51731..51937) Polaromonas naphthalenivorans CJ2 4685980 YP_973955.1 CDS Pnap_4804 NC_008761.1 52074 53060 R hypothetical protein complement(52074..53060) Polaromonas naphthalenivorans CJ2 4686003 YP_973956.1 CDS Pnap_4805 NC_008761.1 53528 54088 R PFAM: protein of unknown function DUF820; KEGG: ava:Ava_0371 protein of unknown function DUF820; hypothetical protein complement(53528..54088) Polaromonas naphthalenivorans CJ2 4686004 YP_973957.1 CDS Pnap_4806 NC_008761.1 54174 55154 R KEGG: pol:Bpro_0367 hypothetical protein; hypothetical protein complement(54174..55154) Polaromonas naphthalenivorans CJ2 4686005 YP_973958.1 CDS Pnap_4807 NC_008761.1 55410 55634 D SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0373 transcriptional regulator, Cro/CI family; helix-turn-helix domain-containing protein 55410..55634 Polaromonas naphthalenivorans CJ2 4686009 YP_973959.1 CDS Pnap_4808 NC_008761.1 55758 56309 R hypothetical protein complement(55758..56309) Polaromonas naphthalenivorans CJ2 4686010 YP_973960.1 CDS Pnap_4810 NC_008761.1 57078 57341 D KEGG: aci:ACIAD3407 hypothetical protein; hypothetical protein 57078..57341 Polaromonas naphthalenivorans CJ2 4685974 YP_973961.1 CDS Pnap_4811 NC_008761.1 57390 57596 R KEGG: psp:PSPPH_B0005 transcriptional regulator, Cro/CI family; putative transcriptional regulator complement(57390..57596) Polaromonas naphthalenivorans CJ2 4686000 YP_973962.1 CDS Pnap_4812 NC_008761.1 57909 58718 R KEGG: bcn:Bcen_2656 hypothetical protein; hypothetical protein complement(57909..58718) Polaromonas naphthalenivorans CJ2 4686001 YP_973963.1 CDS Pnap_4973 NC_008762.1 21609 1119 D KEGG: xft:PD0577 site-specific DNA-methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase join(21609..21611,1..1119) Polaromonas naphthalenivorans CJ2 4686031 YP_973964.1 CDS Pnap_4974 NC_008762.1 1046 1798 R KEGG: cch:Cag_1630 hypothetical protein; hypothetical protein complement(1046..1798) Polaromonas naphthalenivorans CJ2 4686033 YP_973965.1 CDS Pnap_4975 NC_008762.1 1798 2982 R PFAM: protein of unknown function DUF262; KEGG: rpb:RPB_2195 hypothetical protein; hypothetical protein complement(1798..2982) Polaromonas naphthalenivorans CJ2 4686030 YP_973966.1 CDS Pnap_4976 NC_008762.1 3010 3630 R PFAM: peptidase S24, S26A and S26B; KEGG: ngo:NGO0479 putative lambda repressor protein CI, putative phage associated protein; putative phage repressor complement(3010..3630) Polaromonas naphthalenivorans CJ2 4686019 YP_973967.1 CDS Pnap_4977 NC_008762.1 3998 4507 R KEGG: bur:Bcep18194_A4982 hypothetical protein; hypothetical protein complement(3998..4507) Polaromonas naphthalenivorans CJ2 4686016 YP_973968.1 CDS Pnap_4978 NC_008762.1 4501 4917 R KEGG: pol:Bpro_5485 transcription regulator containing helix turn helix domain; hypothetical protein complement(4501..4917) Polaromonas naphthalenivorans CJ2 4686034 YP_973969.1 CDS Pnap_4979 NC_008762.1 5113 5346 R hypothetical protein complement(5113..5346) Polaromonas naphthalenivorans CJ2 4686032 YP_973970.1 CDS Pnap_4980 NC_008762.1 5343 5972 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: xac:XACa0041 partition protein A; cobyrinic acid a,c-diamide synthase complement(5343..5972) Polaromonas naphthalenivorans CJ2 4686020 YP_973971.1 CDS Pnap_4981 NC_008762.1 6171 7070 R KEGG: tcr:504039.180 mucin-associated surface protein (MASP) Pfam: Mucin PROSITE: ALA_RICH GLU_RICH; mucin-associated surface protein complement(6171..7070) Polaromonas naphthalenivorans CJ2 4686024 YP_973972.1 CDS Pnap_4982 NC_008762.1 7158 9689 R PFAM: Relaxase/mobilization nuclease family protein; KEGG: relaxase/mobilization nuclease domain protein; relaxase/mobilization nuclease family protein complement(7158..9689) Polaromonas naphthalenivorans CJ2 4686029 YP_973973.1 CDS Pnap_4983 NC_008762.1 9788 10114 R hypothetical protein complement(9788..10114) Polaromonas naphthalenivorans CJ2 4686015 YP_973974.1 CDS Pnap_4984 NC_008762.1 10429 10821 D hypothetical protein 10429..10821 Polaromonas naphthalenivorans CJ2 4686027 YP_973975.1 CDS Pnap_4985 NC_008762.1 10818 11522 D KEGG: bxe:Bxe_A2574 hypothetical protein; hypothetical protein 10818..11522 Polaromonas naphthalenivorans CJ2 4686025 YP_973976.1 CDS Pnap_4986 NC_008762.1 11519 12316 D hypothetical protein 11519..12316 Polaromonas naphthalenivorans CJ2 4686021 YP_973977.1 CDS Pnap_4987 NC_008762.1 13196 16660 R KEGG: rfr:Rfer_4327 hypothetical protein; hypothetical protein complement(13196..16660) Polaromonas naphthalenivorans CJ2 4686022 YP_973978.1 CDS Pnap_4988 NC_008762.1 17280 18218 R KEGG: rru:Rru_A0352 RepA; plasmid replication initiator protein-like protein complement(17280..18218) Polaromonas naphthalenivorans CJ2 4686028 YP_973979.1 CDS Pnap_4989 NC_008762.1 18290 18595 R TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ecs:ECs1067 hypothetical protein; addiction module antitoxin complement(18290..18595) Polaromonas naphthalenivorans CJ2 4686017 YP_973980.1 CDS Pnap_4990 NC_008762.1 18573 19037 R KEGG: gme:Gmet_A3568 hypothetical protein; hypothetical protein complement(18573..19037) Polaromonas naphthalenivorans CJ2 4686026 YP_973981.1 CDS Pnap_4991 NC_008762.1 19167 19736 R PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: psp:PSPPH_B0057 resolvase, putative; resolvase domain-containing protein complement(19167..19736) Polaromonas naphthalenivorans CJ2 4686023 YP_973982.1 CDS Pnap_4992 NC_008762.1 20107 20820 R unwinds double stranded DNA; replicative DNA helicase complement(20107..20820) Polaromonas naphthalenivorans CJ2 4686018 YP_973983.1 CDS Pnap_4993 NC_008763.1 9760 542 D KEGG: eba:ebA510 hypothetical protein; hypothetical protein join(9760..9898,1..542) Polaromonas naphthalenivorans CJ2 4686038 YP_973984.1 CDS Pnap_4994 NC_008763.1 889 1359 D SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 889..1359 Polaromonas naphthalenivorans CJ2 4686037 YP_973985.1 CDS Pnap_4995 NC_008763.1 1632 1841 R KEGG: pst:PSPTOA0015 plasmid partition protein ParB, truncated; plasmid partition protein ParB, truncated complement(1632..1841) Polaromonas naphthalenivorans CJ2 4686041 YP_973986.1 CDS Pnap_4996 NC_008763.1 1854 2483 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: yps:pYptb0037 plasmid partitioning protein; cobyrinic acid a,c-diamide synthase complement(1854..2483) Polaromonas naphthalenivorans CJ2 4686040 YP_973987.1 CDS Pnap_4997 NC_008763.1 3265 3564 R hypothetical protein complement(3265..3564) Polaromonas naphthalenivorans CJ2 4686042 YP_973988.1 CDS Pnap_4998 NC_008763.1 3786 6086 D PFAM: MobA/MobL protein; KEGG: xac:XAC3260 plasmid mobilization protein; MobA/MobL protein 3786..6086 Polaromonas naphthalenivorans CJ2 4686045 YP_973989.1 CDS Pnap_4999 NC_008763.1 6101 6538 R PFAM: protein of unknown function DUF29; KEGG: plu:plu3933 hypothetical protein; hypothetical protein complement(6101..6538) Polaromonas naphthalenivorans CJ2 4686043 YP_973990.1 CDS Pnap_5000 NC_008763.1 6535 6780 R hypothetical protein complement(6535..6780) Polaromonas naphthalenivorans CJ2 4686039 YP_973991.1 CDS Pnap_5001 NC_008763.1 7191 7706 D hypothetical protein 7191..7706 Polaromonas naphthalenivorans CJ2 4686044 YP_973992.1 CDS Pnap_5002 NC_008763.1 8054 8710 D KEGG: jan:Jann_1769 mucin-associated surface protein; hypothetical protein 8054..8710 Polaromonas naphthalenivorans CJ2 4686036 YP_973993.1 CDS Pnap_5003 NC_008763.1 8745 9026 R hypothetical protein complement(8745..9026) Polaromonas naphthalenivorans CJ2 4686035 YP_973994.1 CDS Pnap_5004 NC_008764.1 89 922 R PFAM: replication C family protein; KEGG: sty:HCM1.221 putative replication protein; replication C family protein complement(89..922) Polaromonas naphthalenivorans CJ2 4686046 YP_973995.1 CDS Pnap_5005 NC_008764.1 912 1751 R KEGG: sfx:S2721 putative DNA helicase; putative DNA helicase complement(912..1751) Polaromonas naphthalenivorans CJ2 4686047 YP_973996.1 CDS Pnap_5006 NC_008764.1 2033 4519 R PFAM: Relaxase/mobilization nuclease family protein; KEGG: bxe:Bxe_A3938 hypothetical protein; relaxase/mobilization nuclease family protein complement(2033..4519) Polaromonas naphthalenivorans CJ2 4686048 YP_973997.1 CDS Pnap_5007 NC_008764.1 4522 4893 R PFAM: mobilisation protein; mobilisation protein complement(4522..4893) Polaromonas naphthalenivorans CJ2 4686049 YP_973998.1 CDS Pnap_5008 NC_008764.1 5172 5627 R hypothetical protein complement(5172..5627) Polaromonas naphthalenivorans CJ2 4686050 YP_980249.1 CDS Pnap_0002 NC_008781.1 2826 3659 D KEGG: jan:Jann_1999 hypothetical protein; hypothetical protein 2826..3659 Polaromonas naphthalenivorans CJ2 4687344 YP_980250.1 CDS Pnap_0003 NC_008781.1 3701 4522 R hypothetical protein complement(3701..4522) Polaromonas naphthalenivorans CJ2 4687079 YP_980251.1 CDS Pnap_0004 NC_008781.1 4747 4953 D KEGG: rfr:Rfer_0182 hypothetical protein; hypothetical protein 4747..4953 Polaromonas naphthalenivorans CJ2 4687078 YP_980252.1 CDS Pnap_0005 NC_008781.1 5033 5608 D PFAM: NnrUfamily protein; KEGG: pol:Bpro_0008 NnrU; NnrU family protein 5033..5608 Polaromonas naphthalenivorans CJ2 4687080 YP_980253.1 CDS Pnap_0006 NC_008781.1 5834 6508 D KEGG: pol:Bpro_0016 hypothetical protein; hypothetical protein 5834..6508 Polaromonas naphthalenivorans CJ2 4687081 YP_980254.1 CDS Pnap_0007 NC_008781.1 6653 6913 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(6653..6913) Polaromonas naphthalenivorans CJ2 4687082 YP_980255.1 CDS Pnap_0008 NC_008781.1 6920 7735 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0019 septum site-determining protein MinD; septum site-determining protein MinD complement(6920..7735) Polaromonas naphthalenivorans CJ2 4687083 YP_980256.1 CDS Pnap_0009 NC_008781.1 7871 8641 R TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: pol:Bpro_0020 septum site-determining protein MinC; septum site-determining protein MinC complement(7871..8641) Polaromonas naphthalenivorans CJ2 4687084 YP_980257.1 CDS Pnap_0010 NC_008781.1 8791 9030 D KEGG: pol:Bpro_0021 metallophosphoesterase; hypothetical protein 8791..9030 Polaromonas naphthalenivorans CJ2 4687086 YP_980258.1 CDS Pnap_0011 NC_008781.1 9140 9574 D PFAM: protein of unknown function DUF296; KEGG: bxe:Bxe_B2660 hypothetical protein; hypothetical protein 9140..9574 Polaromonas naphthalenivorans CJ2 4687085 YP_980259.1 CDS Pnap_0012 NC_008781.1 9620 10642 R KEGG: pol:Bpro_0024 hypothetical protein; hypothetical protein complement(9620..10642) Polaromonas naphthalenivorans CJ2 4687088 YP_980260.1 CDS Pnap_0013 NC_008781.1 10635 11936 R PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_0025 phospholipase D/transphosphatidylase; cardiolipin synthase 2 complement(10635..11936) Polaromonas naphthalenivorans CJ2 4687087 YP_980261.1 CDS Pnap_0014 NC_008781.1 12012 12845 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pol:Bpro_0026 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(12012..12845) Polaromonas naphthalenivorans CJ2 4687089 YP_980262.1 CDS Pnap_0015 NC_008781.1 13194 13568 D KEGG: rfr:Rfer_2108 hypothetical protein; hypothetical protein 13194..13568 Polaromonas naphthalenivorans CJ2 4687090 YP_980263.1 CDS Pnap_0016 NC_008781.1 13600 14670 R KEGG: pol:Bpro_0028 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(13600..14670) Polaromonas naphthalenivorans CJ2 4687091 YP_980264.1 CDS Pnap_0017 NC_008781.1 14939 15508 R KEGG: pol:Bpro_0029 hypothetical protein; hypothetical protein complement(14939..15508) Polaromonas naphthalenivorans CJ2 4687092 YP_980265.1 CDS Pnap_0018 NC_008781.1 15738 16397 D KEGG: rfr:Rfer_2928 hypothetical protein; hypothetical protein 15738..16397 Polaromonas naphthalenivorans CJ2 4687093 YP_980266.1 CDS Pnap_0019 NC_008781.1 16663 18579 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 16663..18579 Polaromonas naphthalenivorans CJ2 4687094 YP_980267.1 CDS Pnap_0020 NC_008781.1 18854 19921 D TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0038 FAD dependent oxidoreductase; glycine oxidase ThiO 18854..19921 Polaromonas naphthalenivorans CJ2 4687095 YP_980268.1 CDS Pnap_0021 NC_008781.1 19946 20155 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: hch:HCH_00139 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 19946..20155 Polaromonas naphthalenivorans CJ2 4687096 YP_980269.1 CDS thiG NC_008781.1 20158 20976 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 20158..20976 Polaromonas naphthalenivorans CJ2 4687097 YP_980270.1 CDS Pnap_0023 NC_008781.1 21038 21679 D KEGG: pol:Bpro_0041 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 21038..21679 Polaromonas naphthalenivorans CJ2 4687098 YP_980271.1 CDS Pnap_0024 NC_008781.1 21825 22331 D KEGG: sde:Sde_1824 hypothetical protein; hypothetical protein 21825..22331 Polaromonas naphthalenivorans CJ2 4687101 YP_980272.1 CDS Pnap_0025 NC_008781.1 22361 23635 R PFAM: glycosyl transferase, family 51; KEGG: stt:t3243 monofunctional biosynthetic peptidoglycan transglycosylase; glycosyl transferase family protein complement(22361..23635) Polaromonas naphthalenivorans CJ2 4687100 YP_980273.1 CDS Pnap_0026 NC_008781.1 23632 24183 R hypothetical protein complement(23632..24183) Polaromonas naphthalenivorans CJ2 4687102 YP_980274.1 CDS Pnap_0027 NC_008781.1 24208 25053 R KEGG: hch:HCH_06497 hypothetical protein; hypothetical protein complement(24208..25053) Polaromonas naphthalenivorans CJ2 4687103 YP_980275.1 CDS Pnap_0028 NC_008781.1 25129 27234 R PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: sat:SYN_02036 von Willebrand factor type A like domain; vault protein inter-alpha-trypsin subunit complement(25129..27234) Polaromonas naphthalenivorans CJ2 4687104 YP_980276.1 CDS Pnap_0029 NC_008781.1 27624 29060 R part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC complement(27624..29060) Polaromonas naphthalenivorans CJ2 4687105 YP_980277.1 CDS Pnap_0030 NC_008781.1 29057 29905 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: reu:Reut_A0185 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator complement(29057..29905) Polaromonas naphthalenivorans CJ2 4687106 YP_980278.1 CDS Pnap_0031 NC_008781.1 29940 31055 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pol:Bpro_0063 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(29940..31055) Polaromonas naphthalenivorans CJ2 4687160 YP_980279.1 CDS Pnap_0032 NC_008781.1 31502 31687 D PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0066 protein of unknown function DUF1328; hypothetical protein 31502..31687 Polaromonas naphthalenivorans CJ2 4687114 YP_980280.1 CDS Pnap_0033 NC_008781.1 31692 32006 D KEGG: pol:Bpro_0067 hypothetical protein; hypothetical protein 31692..32006 Polaromonas naphthalenivorans CJ2 4687154 YP_980281.1 CDS Pnap_0034 NC_008781.1 32075 32929 D PFAM: transglutaminase domain protein; KEGG: pol:Bpro_0068 transglutaminase-like; transglutaminase domain-containing protein 32075..32929 Polaromonas naphthalenivorans CJ2 4689993 YP_980282.1 CDS Pnap_0035 NC_008781.1 33135 34937 R catalyzes the hydrolysis of allophanate; allophanate hydrolase complement(33135..34937) Polaromonas naphthalenivorans CJ2 4689992 YP_980283.1 CDS Pnap_0036 NC_008781.1 34934 38545 R TIGRFAM: urea amidolyase related protein; biotin carboxylation domain protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reu:Reut_B4883 allophanate hydrolase subunit 2; biotin carboxylase complement(34934..38545) Polaromonas naphthalenivorans CJ2 4689990 YP_980284.1 CDS Pnap_0037 NC_008781.1 38686 39339 R KEGG: neu:NE2417 hypothetical protein; hypothetical protein complement(38686..39339) Polaromonas naphthalenivorans CJ2 4689991 YP_980285.1 CDS Pnap_0038 NC_008781.1 39336 40070 R KEGG: bxe:Bxe_B1382 hypothetical protein; hypothetical protein complement(39336..40070) Polaromonas naphthalenivorans CJ2 4689987 YP_980286.1 CDS Pnap_0039 NC_008781.1 40067 40897 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_B4886 ABC transporter related; ABC transporter-like protein complement(40067..40897) Polaromonas naphthalenivorans CJ2 4689985 YP_980287.1 CDS Pnap_0040 NC_008781.1 40903 41682 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_B4887 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(40903..41682) Polaromonas naphthalenivorans CJ2 4689986 YP_980288.1 CDS Pnap_0041 NC_008781.1 41693 42709 R TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NLPA lipoprotein; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: reu:Reut_B4888 ABC transporter, substrate-binding protein, aliphatic sulphonates; aliphatic sulfonates ABC transporter substrate-binding protein complement(41693..42709) Polaromonas naphthalenivorans CJ2 4689989 YP_980289.1 CDS Pnap_0042 NC_008781.1 43159 43542 R KEGG: bxe:Bxe_A3256 methylglyoxal synthase; TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein; methylglyoxal synthase complement(43159..43542) Polaromonas naphthalenivorans CJ2 4689774 YP_980290.1 CDS Pnap_0043 NC_008781.1 43586 44605 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: gka:GK1971 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein); TRAP dicarboxylate transporter subunit DctP complement(43586..44605) Polaromonas naphthalenivorans CJ2 4689983 YP_980291.1 CDS Pnap_0044 NC_008781.1 44646 45938 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sme:SMa0250 conserved hypothetical DedA-like protein; TRAP dicarboxylate transporter subunit DctM complement(44646..45938) Polaromonas naphthalenivorans CJ2 4689329 YP_980292.1 CDS Pnap_0045 NC_008781.1 45944 46456 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_2839 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(45944..46456) Polaromonas naphthalenivorans CJ2 4689332 YP_980293.1 CDS Pnap_0046 NC_008781.1 46453 46962 R TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: rfr:Rfer_0956 carbohydrate kinase, thermoresistant glucokinase; carbohydrate kinase complement(46453..46962) Polaromonas naphthalenivorans CJ2 4689341 YP_980294.1 CDS Pnap_0047 NC_008781.1 47101 48171 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_0957 transcriptional regulator, LacI family; periplasmic-binding protein/LacI transcriptional regulator 47101..48171 Polaromonas naphthalenivorans CJ2 4689334 YP_980295.1 CDS Pnap_0048 NC_008781.1 48364 48840 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_2851 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 48364..48840 Polaromonas naphthalenivorans CJ2 4689339 YP_980296.1 CDS Pnap_0049 NC_008781.1 48852 50699 D PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: rfr:Rfer_2850 aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase 48852..50699 Polaromonas naphthalenivorans CJ2 4689786 YP_980297.1 CDS Pnap_0050 NC_008781.1 50775 52064 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2849 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 50775..52064 Polaromonas naphthalenivorans CJ2 4689793 YP_980298.1 CDS Pnap_0051 NC_008781.1 52061 52315 D PFAM: thiamineS protein; KEGG: rfr:Rfer_2848 thiamineS; hypothetical protein 52061..52315 Polaromonas naphthalenivorans CJ2 4689803 YP_980299.1 CDS Pnap_0052 NC_008781.1 52320 52619 D KEGG: rfr:Rfer_2847 hypothetical protein; hypothetical protein 52320..52619 Polaromonas naphthalenivorans CJ2 4689813 YP_980300.1 CDS Pnap_0053 NC_008781.1 52725 54020 D PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_0283 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 52725..54020 Polaromonas naphthalenivorans CJ2 4689824 YP_980301.1 CDS Pnap_0054 NC_008781.1 54110 55105 D KEGG: spn:SP1772 cell wall surface anchor family protein; hypothetical protein 54110..55105 Polaromonas naphthalenivorans CJ2 4689836 YP_980302.1 CDS Pnap_0055 NC_008781.1 55153 55944 D hypothetical protein 55153..55944 Polaromonas naphthalenivorans CJ2 4689782 YP_980303.1 CDS Pnap_0056 NC_008781.1 56052 58742 R PFAM: GCN5-related N-acetyltransferase; ATP-citrate lyase/succinyl-CoA ligase; KEGG: rfr:Rfer_2352 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(56052..58742) Polaromonas naphthalenivorans CJ2 4689787 YP_980304.1 CDS Pnap_0057 NC_008781.1 58751 59677 R PFAM: histone deacetylase superfamily; KEGG: bxe:Bxe_B1514 putative histone deacetylase-family protein; histone deacetylase superfamily protein complement(58751..59677) Polaromonas naphthalenivorans CJ2 4689776 YP_980305.1 CDS Pnap_0058 NC_008781.1 59940 61100 R hypothetical protein complement(59940..61100) Polaromonas naphthalenivorans CJ2 4689971 YP_980306.1 CDS Pnap_0059 NC_008781.1 61169 63475 R KEGG: ade:Adeh_0897 hypothetical protein; hypothetical protein complement(61169..63475) Polaromonas naphthalenivorans CJ2 4690007 YP_980307.1 CDS Pnap_0060 NC_008781.1 63703 64887 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(63703..64887) Polaromonas naphthalenivorans CJ2 4689872 YP_980308.1 CDS Pnap_0061 NC_008781.1 65095 65376 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: gox:GOX1500 hypothetical protein; prevent-host-death family protein 65095..65376 Polaromonas naphthalenivorans CJ2 4689890 YP_980309.1 CDS Pnap_0062 NC_008781.1 65380 65799 D KEGG: dge:Dgeo_2717 hypothetical protein; hypothetical protein 65380..65799 Polaromonas naphthalenivorans CJ2 4689904 YP_980310.1 CDS Pnap_0063 NC_008781.1 65801 67804 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 65801..67804 Polaromonas naphthalenivorans CJ2 4689926 YP_980311.1 CDS gidB NC_008781.1 67804 68469 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 67804..68469 Polaromonas naphthalenivorans CJ2 4689619 YP_980312.1 CDS Pnap_0065 NC_008781.1 68499 69125 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_0075 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 68499..69125 Polaromonas naphthalenivorans CJ2 4686303 YP_980313.1 CDS Pnap_0066 NC_008781.1 69180 69944 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0076 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 69180..69944 Polaromonas naphthalenivorans CJ2 4687582 YP_980314.1 CDS Pnap_0067 NC_008781.1 70070 70612 D PFAM: protein of unknown function DUF1234; KEGG: pol:Bpro_0077 protein of unknown function DUF1234; hypothetical protein 70070..70612 Polaromonas naphthalenivorans CJ2 4686517 YP_980315.1 CDS Pnap_0068 NC_008781.1 70682 71617 D TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: pol:Bpro_0078 ParB-like partition proteins; parB-like partition proteins 70682..71617 Polaromonas naphthalenivorans CJ2 4687578 YP_980316.1 CDS Pnap_0069 NC_008781.1 71660 73081 R PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0111 FAD linked oxidase-like; FAD linked oxidase domain-containing protein complement(71660..73081) Polaromonas naphthalenivorans CJ2 4688054 YP_980317.1 CDS Pnap_0070 NC_008781.1 73261 73854 D TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pol:Bpro_0113 ATP--cobalamin adenosyltransferase; ATP--cobalamin adenosyltransferase 73261..73854 Polaromonas naphthalenivorans CJ2 4686447 YP_980318.1 CDS Pnap_0071 NC_008781.1 73873 74817 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_A2466 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(73873..74817) Polaromonas naphthalenivorans CJ2 4687579 YP_980319.1 CDS Pnap_0072 NC_008781.1 74868 75176 R hypothetical protein complement(74868..75176) Polaromonas naphthalenivorans CJ2 4688268 YP_980320.1 CDS Pnap_0073 NC_008781.1 75670 77220 R PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_2807 acetyl-CoA hydrolase/transferase; Acetyl-CoA hydrolase complement(75670..77220) Polaromonas naphthalenivorans CJ2 4688384 YP_980321.1 CDS Pnap_0074 NC_008781.1 77560 78861 D KEGG: pol:Bpro_0115 hypothetical protein; hypothetical protein 77560..78861 Polaromonas naphthalenivorans CJ2 4689973 YP_980322.1 CDS Pnap_0075 NC_008781.1 78921 79361 D KEGG: pol:Bpro_0116 hypothetical protein; hypothetical protein 78921..79361 Polaromonas naphthalenivorans CJ2 4689607 YP_980323.1 CDS Pnap_0076 NC_008781.1 79407 80693 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pol:Bpro_0117 uracil-xanthine permease; uracil-xanthine permease complement(79407..80693) Polaromonas naphthalenivorans CJ2 4688589 YP_980324.1 CDS Pnap_0077 NC_008781.1 80771 81925 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: lpp:lpp2271 twitching motility protein PilU; twitching motility protein complement(80771..81925) Polaromonas naphthalenivorans CJ2 4687681 YP_980325.1 CDS Pnap_0078 NC_008781.1 82107 82568 D KEGG: pol:Bpro_5398 putative transposase, IS891/IS1136/IS1341; putative transposase, IS891/IS1136/IS1341 82107..82568 Polaromonas naphthalenivorans CJ2 4686441 YP_980326.1 CDS Pnap_0079 NC_008781.1 82622 83347 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB; KEGG: pol:Bpro_5398 putative transposase, IS891/IS1136/IS1341; IS605 family transposase OrfB 82622..83347 Polaromonas naphthalenivorans CJ2 4689818 YP_980327.1 CDS Pnap_0080 NC_008781.1 83455 84699 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ade:Adeh_3412 secretion protein HlyD; RND family efflux transporter MFP subunit 83455..84699 Polaromonas naphthalenivorans CJ2 4688681 YP_980328.1 CDS Pnap_0081 NC_008781.1 84719 85981 D PFAM: protein of unknown function DUF214; KEGG: ade:Adeh_3411 ABC transporter, inner membrane subunit; hypothetical protein 84719..85981 Polaromonas naphthalenivorans CJ2 4686291 YP_980329.1 CDS Pnap_0082 NC_008781.1 86106 86903 R hypothetical protein complement(86106..86903) Polaromonas naphthalenivorans CJ2 4686262 YP_980330.1 CDS Pnap_0084 NC_008781.1 87552 87908 D PFAM: protein of unknown function DUF891; KEGG: eba:ebD100 hypothetical prophage protein; hypothetical protein 87552..87908 Polaromonas naphthalenivorans CJ2 4687694 YP_980331.1 CDS Pnap_0085 NC_008781.1 87914 88234 D KEGG: cch:Cag_1308 hypothetical protein; putative transcriptional regulator 87914..88234 Polaromonas naphthalenivorans CJ2 4686832 YP_980332.1 CDS Pnap_0086 NC_008781.1 88241 88936 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3881 ABC transporter related; ABC transporter-like protein 88241..88936 Polaromonas naphthalenivorans CJ2 4686541 YP_980333.1 CDS Pnap_0087 NC_008781.1 89356 89646 D KEGG: mlo:msl5725 hypothetical protein; hypothetical protein 89356..89646 Polaromonas naphthalenivorans CJ2 4688462 YP_980334.1 CDS Pnap_0088 NC_008781.1 89793 90212 R KEGG: dar:Daro_2916 hypothetical protein; hypothetical protein complement(89793..90212) Polaromonas naphthalenivorans CJ2 4688848 YP_980335.1 CDS Pnap_0089 NC_008781.1 90501 92018 R PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: rfr:Rfer_2024 adenylate cyclase; adenylate cyclase complement(90501..92018) Polaromonas naphthalenivorans CJ2 4686113 YP_980336.1 CDS Pnap_0090 NC_008781.1 92109 93173 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: rso:RSp1044 probable cobalt-nickel-resistance system transmembrane protein; hypothetical protein complement(92109..93173) Polaromonas naphthalenivorans CJ2 4688923 YP_980337.1 CDS Pnap_0091 NC_008781.1 93497 96289 D KEGG: ana:alr3092 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 93497..96289 Polaromonas naphthalenivorans CJ2 4686429 YP_980338.1 CDS Pnap_0092 NC_008781.1 96335 96853 R PFAM: flavin reductase domain protein, FMN-binding; KEGG: pol:Bpro_0126 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein complement(96335..96853) Polaromonas naphthalenivorans CJ2 4687322 YP_980339.1 CDS Pnap_0093 NC_008781.1 96966 97262 R KEGG: pol:Bpro_0143 hypothetical protein; hypothetical protein complement(96966..97262) Polaromonas naphthalenivorans CJ2 4687775 YP_980340.1 CDS Pnap_0094 NC_008781.1 97385 98752 R PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0148 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase complement(97385..98752) Polaromonas naphthalenivorans CJ2 4689780 YP_980341.1 CDS Pnap_0095 NC_008781.1 98864 99778 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 98864..99778 Polaromonas naphthalenivorans CJ2 4687695 YP_980342.1 CDS Pnap_0096 NC_008781.1 99880 101130 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0150 extracellular ligand-binding receptor; extracellular ligand-binding receptor 99880..101130 Polaromonas naphthalenivorans CJ2 4686306 YP_980343.1 CDS Pnap_0097 NC_008781.1 101249 104923 D KEGG: pol:Bpro_0151 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 101249..104923 Polaromonas naphthalenivorans CJ2 4687029 YP_980344.1 CDS Pnap_0098 NC_008781.1 105043 105465 R PFAM: UspA domain protein; KEGG: rfr:Rfer_0401 UspA; UspA domain-containing protein complement(105043..105465) Polaromonas naphthalenivorans CJ2 4687249 YP_980345.1 CDS Pnap_0099 NC_008781.1 105547 106497 R PFAM: metallophosphoesterase; KEGG: pol:Bpro_0155 metallophosphoesterase; metallophosphoesterase complement(105547..106497) Polaromonas naphthalenivorans CJ2 4687252 YP_980346.1 CDS Pnap_0100 NC_008781.1 106815 107771 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0158 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(106815..107771) Polaromonas naphthalenivorans CJ2 4687066 YP_980347.1 CDS Pnap_0101 NC_008781.1 107919 108440 D KEGG: pol:Bpro_0159 hypothetical protein; hypothetical protein 107919..108440 Polaromonas naphthalenivorans CJ2 4687032 YP_980348.1 CDS Pnap_0102 NC_008781.1 108552 110420 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(108552..110420) Polaromonas naphthalenivorans CJ2 4688325 YP_980349.1 CDS Pnap_0103 NC_008781.1 110417 110683 R hypothetical protein complement(110417..110683) Polaromonas naphthalenivorans CJ2 4687939 YP_980350.1 CDS Pnap_0104 NC_008781.1 111104 112474 R hypothetical protein complement(111104..112474) Polaromonas naphthalenivorans CJ2 4688373 YP_980351.1 CDS Pnap_0105 NC_008781.1 112533 113192 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: corR; DNA-binding response regulator CorR; two component LuxR family transcriptional regulator 112533..113192 Polaromonas naphthalenivorans CJ2 4688528 YP_980352.1 CDS Pnap_0106 NC_008781.1 113225 115198 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_4855 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 113225..115198 Polaromonas naphthalenivorans CJ2 4688823 YP_980353.1 CDS Pnap_0107 NC_008781.1 115233 115898 R PFAM: ABC transporter related; KEGG: rfr:Rfer_3383 ABC transporter related; ABC transporter-like protein complement(115233..115898) Polaromonas naphthalenivorans CJ2 4688693 YP_980354.1 CDS Pnap_0108 NC_008781.1 116006 116251 R KEGG: rfr:Rfer_0345 hypothetical protein; hypothetical protein complement(116006..116251) Polaromonas naphthalenivorans CJ2 4689311 YP_980355.1 CDS Pnap_0109 NC_008781.1 116291 116764 D KEGG: pol:Bpro_0164 hypothetical protein; hypothetical protein 116291..116764 Polaromonas naphthalenivorans CJ2 4689317 YP_980356.1 CDS Pnap_0110 NC_008781.1 116771 117349 D PFAM: MOSC domain containing protein; KEGG: rme:Rmet_3580 MOSC domain protein; MOSC domain-containing protein 116771..117349 Polaromonas naphthalenivorans CJ2 4689766 YP_980357.1 CDS Pnap_0111 NC_008781.1 117376 118578 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(117376..118578) Polaromonas naphthalenivorans CJ2 4689862 YP_980358.1 CDS Pnap_0112 NC_008781.1 118782 121151 D PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_0166 AAA ATPase, central region; ATPase central domain-containing protein 118782..121151 Polaromonas naphthalenivorans CJ2 4688634 YP_980359.1 CDS Pnap_0113 NC_008781.1 121574 121873 D KEGG: bxe:Bxe_B0555 hypothetical protein; hypothetical protein 121574..121873 Polaromonas naphthalenivorans CJ2 4689270 YP_980360.1 CDS Pnap_0114 NC_008781.1 122049 123968 R KEGG: pol:Bpro_0170 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ complement(122049..123968) Polaromonas naphthalenivorans CJ2 4689464 YP_980361.1 CDS Pnap_0115 NC_008781.1 124205 125260 D PFAM: homocysteine S-methyltransferase; KEGG: pol:Bpro_0172 5-methyltetrahydrofolate--homocysteine S-methyltransferase; homocysteine S-methyltransferase 124205..125260 Polaromonas naphthalenivorans CJ2 4689164 YP_980362.1 CDS Pnap_0116 NC_008781.1 125288 125872 R PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_0173 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein complement(125288..125872) Polaromonas naphthalenivorans CJ2 4688868 YP_980363.1 CDS Pnap_0117 NC_008781.1 126045 128864 D KEGG: pol:Bpro_0174 5-methyltetrahydrofolate--homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein; methionine synthase 126045..128864 Polaromonas naphthalenivorans CJ2 4688223 YP_980364.1 CDS Pnap_0118 NC_008781.1 129037 130506 D KEGG: mma:MM1677 hypothetical protein; hypothetical protein 129037..130506 Polaromonas naphthalenivorans CJ2 4688033 YP_980365.1 CDS Pnap_0119 NC_008781.1 130589 132136 R KEGG: pol:Bpro_0181 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(130589..132136) Polaromonas naphthalenivorans CJ2 4687485 YP_980366.1 CDS Pnap_0120 NC_008781.1 132475 132813 D PFAM: nitrogen regulatory protein P-II; KEGG: pol:Bpro_0183 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 132475..132813 Polaromonas naphthalenivorans CJ2 4687297 YP_980367.1 CDS Pnap_0121 NC_008781.1 132847 134412 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pol:Bpro_0184 ammonium transporter; ammonium transporter 132847..134412 Polaromonas naphthalenivorans CJ2 4686665 YP_980368.1 CDS Pnap_0122 NC_008781.1 134558 135484 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pol:Bpro_0186 senescence marker protein-30 (SMP-30); SMP-30/gluconolaconase/LRE domain-containing protein 134558..135484 Polaromonas naphthalenivorans CJ2 4686481 YP_980369.1 CDS glcE NC_008781.1 135697 136845 D PFAM: FAD linked oxidase domain protein; KEGG: rfr:Rfer_0480 FAD linked oxidase-like; glycolate oxidase FAD-binding subunit 135697..136845 Polaromonas naphthalenivorans CJ2 4686397 YP_980370.1 CDS Pnap_0124 NC_008781.1 136854 137618 D PFAM: protein of unknown function DUF1275; KEGG: bur:Bcep18194_C7065 protein of unknown function DUF1275; hypothetical protein 136854..137618 Polaromonas naphthalenivorans CJ2 4687164 YP_980371.1 CDS glcF NC_008781.1 137627 138874 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: pol:Bpro_0188 protein of unknown function DUF224, cysteine-rich region; glycolate oxidase iron-sulfur subunit 137627..138874 Polaromonas naphthalenivorans CJ2 4688391 YP_980372.1 CDS Pnap_0126 NC_008781.1 139116 139478 D KEGG: hypothetical protein; hypothetical protein 139116..139478 Polaromonas naphthalenivorans CJ2 4686339 YP_980373.1 CDS Pnap_0127 NC_008781.1 139586 140629 R KEGG: cvi:CV0172 poly (3-hydroxybutyrate) depolymerase; poly (3-hydroxybutyrate) depolymerase complement(139586..140629) Polaromonas naphthalenivorans CJ2 4686138 YP_980374.1 CDS Pnap_0128 NC_008781.1 140744 141229 R PFAM: glutathione peroxidase; KEGG: pol:Bpro_0190 glutathione peroxidase; glutathione peroxidase complement(140744..141229) Polaromonas naphthalenivorans CJ2 4687310 YP_980375.1 CDS Pnap_0129 NC_008781.1 141352 142260 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_0191 protein of unknown function DUF6, transmembrane; hypothetical protein complement(141352..142260) Polaromonas naphthalenivorans CJ2 4687947 YP_980376.1 CDS Pnap_0130 NC_008781.1 142260 143540 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 major facilitator superfamily MFS_1; lysophospholipid transporter LplT complement(142260..143540) Polaromonas naphthalenivorans CJ2 4688920 YP_980377.1 CDS Pnap_0131 NC_008781.1 143732 144829 D KEGG: pol:Bpro_0193 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 143732..144829 Polaromonas naphthalenivorans CJ2 4689202 YP_980378.1 CDS Pnap_0132 NC_008781.1 144826 145665 D KEGG: Dmel_CG32611; CG32611 gene product from transcript CG32611-RB; hypothetical protein 144826..145665 Polaromonas naphthalenivorans CJ2 4689299 YP_980379.1 CDS Pnap_0133 NC_008781.1 145719 146114 D PFAM: DNA polymerase, beta domain protein region; KEGG: neu:NE2224 hypothetical protein; DNA polymerase subunit beta 145719..146114 Polaromonas naphthalenivorans CJ2 4689877 YP_980380.1 CDS Pnap_0134 NC_008781.1 146104 146532 D PFAM: protein of unknown function DUF86; KEGG: neu:NE2225 protein of unknown function DUF86; hypothetical protein 146104..146532 Polaromonas naphthalenivorans CJ2 4689120 YP_980381.1 CDS Pnap_0135 NC_008781.1 146529 147503 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(146529..147503) Polaromonas naphthalenivorans CJ2 4688970 YP_980382.1 CDS Pnap_0136 NC_008781.1 147617 148684 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0198 twin-arginine translocation pathway signal; hypothetical protein complement(147617..148684) Polaromonas naphthalenivorans CJ2 4688468 YP_980383.1 CDS Pnap_0137 NC_008781.1 148739 149176 R PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pol:Bpro_0199 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase complement(148739..149176) Polaromonas naphthalenivorans CJ2 4687685 YP_980384.1 CDS Pnap_0138 NC_008781.1 149206 150633 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 149206..150633 Polaromonas naphthalenivorans CJ2 4687703 YP_980385.1 CDS Pnap_0139 NC_008781.1 150668 151450 D PFAM: metallophosphoesterase; KEGG: pol:Bpro_0201 metallophosphoesterase; metallophosphoesterase 150668..151450 Polaromonas naphthalenivorans CJ2 4686801 YP_980386.1 CDS Pnap_0140 NC_008781.1 151598 152002 D KEGG: pol:Bpro_0202 hypothetical protein; hypothetical protein 151598..152002 Polaromonas naphthalenivorans CJ2 4686460 YP_980387.1 CDS Pnap_0141 NC_008781.1 152045 152521 R KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 complement(152045..152521) Polaromonas naphthalenivorans CJ2 4686896 YP_980388.1 CDS Pnap_0142 NC_008781.1 152541 152999 R KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein complement(152541..152999) Polaromonas naphthalenivorans CJ2 4686133 YP_980389.1 CDS Pnap_0143 NC_008781.1 153075 153602 R PFAM: Spore coat U domain protein; KEGG: bxe:Bxe_B0341 putative lipoprotein; spore coat U domain-containing protein complement(153075..153602) Polaromonas naphthalenivorans CJ2 4687033 YP_980390.1 CDS Pnap_0144 NC_008781.1 153605 155980 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pol:Bpro_0610 fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein complement(153605..155980) Polaromonas naphthalenivorans CJ2 4690108 YP_980391.1 CDS Pnap_0145 NC_008781.1 156232 157020 R KEGG: bur:Bcep18194_A4396 P pilus assembly protein chaperone PapD-like; P pilus assembly protein chaperone PapD-like protein complement(156232..157020) Polaromonas naphthalenivorans CJ2 4686779 YP_980392.1 CDS Pnap_0146 NC_008781.1 157017 157703 R PFAM: Spore coat U domain protein; KEGG: ade:Adeh_3602 spore coat U; spore coat U domain-containing protein complement(157017..157703) Polaromonas naphthalenivorans CJ2 4688927 YP_980393.1 CDS Pnap_0147 NC_008781.1 158095 159036 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 158095..159036 Polaromonas naphthalenivorans CJ2 4686257 YP_980394.1 CDS Pnap_0148 NC_008781.1 159071 159280 D KEGG: pol:Bpro_0204 hypothetical protein; hypothetical protein 159071..159280 Polaromonas naphthalenivorans CJ2 4689302 YP_980395.1 CDS Pnap_0149 NC_008781.1 159398 160423 D TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: pol:Bpro_0205 lipopolysaccharide heptosyltransferase II; lipopolysaccharide heptosyltransferase II 159398..160423 Polaromonas naphthalenivorans CJ2 4686110 YP_980396.1 CDS Pnap_0150 NC_008781.1 160648 161892 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_0207 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(160648..161892) Polaromonas naphthalenivorans CJ2 4686398 YP_980397.1 CDS Pnap_0151 NC_008781.1 161900 162625 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0208 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(161900..162625) Polaromonas naphthalenivorans CJ2 4686428 YP_980398.1 CDS Pnap_0152 NC_008781.1 162786 164186 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0209 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(162786..164186) Polaromonas naphthalenivorans CJ2 4686521 YP_980399.1 CDS Pnap_0153 NC_008781.1 164219 165061 D PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_0210 peptidase M48, Ste24p; peptidase M48, Ste24p 164219..165061 Polaromonas naphthalenivorans CJ2 4686183 YP_980400.1 CDS Pnap_0154 NC_008781.1 165117 165452 R hypothetical protein complement(165117..165452) Polaromonas naphthalenivorans CJ2 4686611 YP_980401.1 CDS Pnap_0155 NC_008781.1 165477 166067 R KEGG: bcn:Bcen_3538 hypothetical protein; hypothetical protein complement(165477..166067) Polaromonas naphthalenivorans CJ2 4686649 YP_980402.1 CDS Pnap_0156 NC_008781.1 166129 166545 R KEGG: rso:RSc0443 probable glycin-rich signal peptide protein; hypothetical protein complement(166129..166545) Polaromonas naphthalenivorans CJ2 4686679 YP_980403.1 CDS Pnap_0157 NC_008781.1 166550 166822 D hypothetical protein 166550..166822 Polaromonas naphthalenivorans CJ2 4686943 YP_980404.1 CDS Pnap_0158 NC_008781.1 166913 167155 D hypothetical protein 166913..167155 Polaromonas naphthalenivorans CJ2 4687419 YP_980405.1 CDS Pnap_0159 NC_008781.1 167736 168044 D hypothetical protein 167736..168044 Polaromonas naphthalenivorans CJ2 4687233 YP_980406.1 CDS Pnap_0160 NC_008781.1 168106 169476 R PFAM: aldehyde dehydrogenase; KEGG: rru:Rru_A0462 aldehyde dehydrogenase; aldehyde dehydrogenase complement(168106..169476) Polaromonas naphthalenivorans CJ2 4687990 YP_980407.1 CDS Pnap_0161 NC_008781.1 169633 170742 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rso:RSc1202 probable flavoprotein NADH-dependent oxidoreductase; NADH:flavin oxidoreductase complement(169633..170742) Polaromonas naphthalenivorans CJ2 4688049 YP_980408.1 CDS Pnap_0162 NC_008781.1 170874 171479 R PFAM: regulatory protein, TetR; KEGG: bcn:Bcen_3964 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(170874..171479) Polaromonas naphthalenivorans CJ2 4687831 YP_980409.1 CDS Pnap_0163 NC_008781.1 171564 172418 D PFAM: protein of unknown function RIO1; KEGG: pol:Bpro_3868 protein of unknown function RIO1; hypothetical protein 171564..172418 Polaromonas naphthalenivorans CJ2 4688158 YP_980410.1 CDS Pnap_0164 NC_008781.1 172430 174193 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2407 putative ABC-transporter membrane-spanning ATP-binding component; ABC transporter-like protein complement(172430..174193) Polaromonas naphthalenivorans CJ2 4688181 YP_980411.1 CDS Pnap_0165 NC_008781.1 174784 176160 R KEGG: bja:blr1916 putative transposase; putative transposase complement(174784..176160) Polaromonas naphthalenivorans CJ2 4688614 YP_980412.1 CDS Pnap_0166 NC_008781.1 176615 178423 D KEGG: gsu:GSU0255 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 176615..178423 Polaromonas naphthalenivorans CJ2 4688847 YP_980413.1 CDS Pnap_0167 NC_008781.1 178441 179400 R KEGG: pol:Bpro_0216 exodeoxyribonuclease III (xth); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(178441..179400) Polaromonas naphthalenivorans CJ2 4688887 YP_980414.1 CDS pyrE NC_008781.1 179453 180166 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 179453..180166 Polaromonas naphthalenivorans CJ2 4688685 YP_980415.1 CDS Pnap_0169 NC_008781.1 180176 180847 D KEGG: pol:Bpro_0218 hypothetical protein; hypothetical protein 180176..180847 Polaromonas naphthalenivorans CJ2 4689169 YP_980416.1 CDS gatB NC_008781.1 180938 182395 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(180938..182395) Polaromonas naphthalenivorans CJ2 4689203 YP_980417.1 CDS gatA NC_008781.1 182392 183924 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(182392..183924) Polaromonas naphthalenivorans CJ2 4689513 YP_980418.1 CDS gatC NC_008781.1 183921 184220 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(183921..184220) Polaromonas naphthalenivorans CJ2 4689539 YP_980419.1 CDS Pnap_0173 NC_008781.1 184476 185564 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 184476..185564 Polaromonas naphthalenivorans CJ2 4689263 YP_980420.1 CDS Pnap_0174 NC_008781.1 185644 186564 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 185644..186564 Polaromonas naphthalenivorans CJ2 4690117 YP_980421.1 CDS Pnap_0175 NC_008781.1 186561 187079 D PFAM: Rod shape-determining protein MreD; KEGG: pol:Bpro_0224 putative rod shape-determining MreD transmembrane protein; rod shape-determining protein MreD 186561..187079 Polaromonas naphthalenivorans CJ2 4689945 YP_980422.1 CDS Pnap_0176 NC_008781.1 187285 189336 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_0225 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 187285..189336 Polaromonas naphthalenivorans CJ2 4689733 YP_980423.1 CDS Pnap_0177 NC_008781.1 189398 190156 R PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_0226 protein of unknown function DUF81; hypothetical protein complement(189398..190156) Polaromonas naphthalenivorans CJ2 4689829 YP_980424.1 CDS Pnap_0178 NC_008781.1 190631 192079 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bxe:Bxe_A4189 ammonium transporter; ammonium transporter 190631..192079 Polaromonas naphthalenivorans CJ2 4689900 YP_980425.1 CDS Pnap_0179 NC_008781.1 192110 192517 D KEGG: rme:Rmet_1299 hypothetical protein; hypothetical protein 192110..192517 Polaromonas naphthalenivorans CJ2 4689121 YP_980426.1 CDS Pnap_0180 NC_008781.1 192546 194282 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pol:Bpro_0229 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(192546..194282) Polaromonas naphthalenivorans CJ2 4689116 YP_980427.1 CDS Pnap_0181 NC_008781.1 194426 195370 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_A0014 transcriptional regulator, LysR family; LysR family transcriptional regulator 194426..195370 Polaromonas naphthalenivorans CJ2 4689070 YP_980428.1 CDS Pnap_0182 NC_008781.1 195478 196626 D PFAM: protein of unknown function DUF140; KEGG: pol:Bpro_0230 protein of unknown function DUF140; hypothetical protein 195478..196626 Polaromonas naphthalenivorans CJ2 4687912 YP_980429.1 CDS Pnap_0183 NC_008781.1 196623 197420 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0231 ABC transporter related; ABC transporter-like protein 196623..197420 Polaromonas naphthalenivorans CJ2 4688379 YP_980430.1 CDS Pnap_0184 NC_008781.1 197434 198366 D PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0232 mammalian cell entry related; hypothetical protein 197434..198366 Polaromonas naphthalenivorans CJ2 4688357 YP_980431.1 CDS Pnap_0185 NC_008781.1 198363 199067 D KEGG: pol:Bpro_0233 putative lipoprotein; putative lipoprotein 198363..199067 Polaromonas naphthalenivorans CJ2 4687613 YP_980432.1 CDS Pnap_0186 NC_008781.1 199168 199800 R PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: pol:Bpro_0238 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like proteins complement(199168..199800) Polaromonas naphthalenivorans CJ2 4686932 YP_980433.1 CDS Pnap_0187 NC_008781.1 199954 200559 D PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_0240 DsbA oxidoreductase; DSBA oxidoreductase 199954..200559 Polaromonas naphthalenivorans CJ2 4686961 YP_980434.1 CDS Pnap_0188 NC_008781.1 200608 201297 D PFAM: dienelactone hydrolase; KEGG: pol:Bpro_0241 carboxymethylenebutenolidase; carboxymethylenebutenolidase 200608..201297 Polaromonas naphthalenivorans CJ2 4686288 YP_980435.1 CDS Pnap_0189 NC_008781.1 201305 201871 R PFAM: protein of unknown function DUF1003; KEGG: tbd:Tbd_1949 hypothetical protein; hypothetical protein complement(201305..201871) Polaromonas naphthalenivorans CJ2 4686914 YP_980436.1 CDS Pnap_0190 NC_008781.1 201912 202682 R PFAM: protein of unknown function DUF72; KEGG: pfo:Pfl_2381 protein of unknown function DUF72; hypothetical protein complement(201912..202682) Polaromonas naphthalenivorans CJ2 4686492 YP_980437.1 CDS Pnap_0191 NC_008781.1 202703 203818 R PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_0244 Mg2+ transporter protein, CorA-like; Mg2+ transporter protein, CorA family protein complement(202703..203818) Polaromonas naphthalenivorans CJ2 4688943 YP_980438.1 CDS Pnap_0192 NC_008781.1 203930 204946 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(203930..204946) Polaromonas naphthalenivorans CJ2 4686464 YP_980439.1 CDS Pnap_0193 NC_008781.1 205309 205737 D PFAM: conserved hypothetical protein 701; KEGG: pol:Bpro_0246 conserved hypothetical protein 701; hypothetical protein 205309..205737 Polaromonas naphthalenivorans CJ2 4689549 YP_980440.1 CDS Pnap_0194 NC_008781.1 205816 207012 D PFAM: VanZ family protein; KEGG: pol:Bpro_0247 VanZ like protein; VanZ family protein 205816..207012 Polaromonas naphthalenivorans CJ2 4687790 YP_980441.1 CDS Pnap_0195 NC_008781.1 207022 207393 D KEGG: pol:Bpro_0248 ferredoxin-like; ferredoxin-like protein 207022..207393 Polaromonas naphthalenivorans CJ2 4689996 YP_980442.1 CDS Pnap_0196 NC_008781.1 207513 208157 D KEGG: pol:Bpro_0249 putative transmembrane protein; hypothetical protein 207513..208157 Polaromonas naphthalenivorans CJ2 4688425 YP_980443.1 CDS Pnap_0197 NC_008781.1 208232 209440 D PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pol:Bpro_0250 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 208232..209440 Polaromonas naphthalenivorans CJ2 4686724 YP_980444.1 CDS rpsL NC_008781.1 209585 209962 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 209585..209962 Polaromonas naphthalenivorans CJ2 4687664 YP_980445.1 CDS Pnap_0199 NC_008781.1 210173 210646 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 210173..210646 Polaromonas naphthalenivorans CJ2 4686102 YP_980446.1 CDS Pnap_0200 NC_008781.1 210853 212955 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 210853..212955 Polaromonas naphthalenivorans CJ2 4687316 YP_980447.1 CDS Pnap_0201 NC_008781.1 213103 214293 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 213103..214293 Polaromonas naphthalenivorans CJ2 4688087 YP_980448.1 CDS rpsJ NC_008781.1 214321 214635 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 214321..214635 Polaromonas naphthalenivorans CJ2 4688862 YP_980449.1 CDS rplC NC_008781.1 214874 215554 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 214874..215554 Polaromonas naphthalenivorans CJ2 4689572 YP_980450.1 CDS rplD NC_008781.1 215554 216174 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 215554..216174 Polaromonas naphthalenivorans CJ2 4689949 YP_980451.1 CDS rplW NC_008781.1 216171 216497 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 216171..216497 Polaromonas naphthalenivorans CJ2 4689031 YP_980452.1 CDS rplB NC_008781.1 216497 217321 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 216497..217321 Polaromonas naphthalenivorans CJ2 4689113 YP_980453.1 CDS rpsS NC_008781.1 217332 217610 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 217332..217610 Polaromonas naphthalenivorans CJ2 4688431 YP_980454.1 CDS rplV NC_008781.1 217620 217949 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 217620..217949 Polaromonas naphthalenivorans CJ2 4687545 YP_980455.1 CDS rpsC NC_008781.1 217962 218849 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 217962..218849 Polaromonas naphthalenivorans CJ2 4686917 YP_980456.1 CDS rplP NC_008781.1 218874 219290 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 218874..219290 Polaromonas naphthalenivorans CJ2 4687275 YP_980457.1 CDS Pnap_0211 NC_008781.1 219307 219510 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 219307..219510 Polaromonas naphthalenivorans CJ2 4687858 YP_980458.1 CDS rpsQ NC_008781.1 219510 219779 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 219510..219779 Polaromonas naphthalenivorans CJ2 4689709 YP_980459.1 CDS Pnap_0213 NC_008781.1 219963 220469 D PFAM: Redoxin domain protein; KEGG: pol:Bpro_0266 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; redoxin domain-containing protein 219963..220469 Polaromonas naphthalenivorans CJ2 4686872 YP_980460.1 CDS Pnap_0214 NC_008781.1 220539 221027 R PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_0267 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(220539..221027) Polaromonas naphthalenivorans CJ2 4686736 YP_980461.1 CDS Pnap_0215 NC_008781.1 221085 221771 R PFAM: cytochrome B561; KEGG: pol:Bpro_0268 cytochrome b561; cytochrome B561 complement(221085..221771) Polaromonas naphthalenivorans CJ2 4687304 YP_980462.1 CDS Pnap_0216 NC_008781.1 221967 222422 D PFAM: cytochrome c, class II; KEGG: pol:Bpro_0269 cytochrome c, class II; class II cytochrome c 221967..222422 Polaromonas naphthalenivorans CJ2 4686348 YP_980463.1 CDS Pnap_0217 NC_008781.1 222550 223065 R PFAM: Redoxin domain protein; KEGG: pol:Bpro_0270 putative transmembrane protein; redoxin domain-containing protein complement(222550..223065) Polaromonas naphthalenivorans CJ2 4686079 YP_980464.1 CDS Pnap_0218 NC_008781.1 223079 223783 D KEGG: pol:Bpro_0271 hypothetical protein; hypothetical protein 223079..223783 Polaromonas naphthalenivorans CJ2 4686121 YP_980465.1 CDS Pnap_0219 NC_008781.1 223886 225166 D KEGG: rfr:Rfer_1327 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-acetylhomoserine/O-acetylserine sulfhydrylase 223886..225166 Polaromonas naphthalenivorans CJ2 4686498 YP_980466.1 CDS Pnap_0220 NC_008781.1 225345 225941 D PFAM: OmpW family protein; KEGG: pol:Bpro_0280 OmpW; OmpW family protein 225345..225941 Polaromonas naphthalenivorans CJ2 4686546 YP_980467.1 CDS Pnap_0221 NC_008781.1 225998 227326 D PFAM: protein of unknown function DUF445; KEGG: bpe:BP2153 hypothetical protein; hypothetical protein 225998..227326 Polaromonas naphthalenivorans CJ2 4686192 YP_980468.1 CDS Pnap_0222 NC_008781.1 227418 228149 R KEGG: pol:Bpro_0278 putative esterase; putative esterase complement(227418..228149) Polaromonas naphthalenivorans CJ2 4686645 YP_980469.1 CDS Pnap_0223 NC_008781.1 228149 229396 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0281 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(228149..229396) Polaromonas naphthalenivorans CJ2 4686669 YP_980470.1 CDS Pnap_0224 NC_008781.1 229582 230601 D PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: bcn:Bcen_4095 transcriptional regulator, LacI family; periplasmic-binding protein/LacI transcriptional regulator 229582..230601 Polaromonas naphthalenivorans CJ2 4687285 YP_980471.1 CDS Pnap_0225 NC_008781.1 230702 231652 R KEGG: hch:HCH_06066 hypothetical protein; hypothetical protein complement(230702..231652) Polaromonas naphthalenivorans CJ2 4687309 YP_980472.1 CDS Pnap_0226 NC_008781.1 231975 233042 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ccr:CC1137 transcriptional regulator, LacI family; periplasmic-binding protein/LacI transcriptional regulator 231975..233042 Polaromonas naphthalenivorans CJ2 4687173 YP_980473.1 CDS Pnap_0227 NC_008781.1 233340 234614 D PFAM: extracellular solute-binding protein, family 1; KEGG: atc:AGR_pAT_379 putative sugar transport sugar binding protein; extracellular solute-binding protein 233340..234614 Polaromonas naphthalenivorans CJ2 4687472 YP_980474.1 CDS Pnap_0228 NC_008781.1 234667 235974 D PFAM: extracellular solute-binding protein, family 1; KEGG: atc:AGR_pAT_379 putative sugar transport sugar binding protein; extracellular solute-binding protein 234667..235974 Polaromonas naphthalenivorans CJ2 4687991 YP_980475.1 CDS Pnap_0229 NC_008781.1 235990 236928 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00048 probable sucrose ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 235990..236928 Polaromonas naphthalenivorans CJ2 4688042 YP_980476.1 CDS Pnap_0230 NC_008781.1 236925 237821 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_376 sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 236925..237821 Polaromonas naphthalenivorans CJ2 4688138 YP_980477.1 CDS Pnap_0231 NC_008781.1 237855 238946 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06906 ABC-type sugar transport system, ATPase components; ABC transporter-like protein 237855..238946 Polaromonas naphthalenivorans CJ2 4687854 YP_980478.1 CDS Pnap_0232 NC_008781.1 238956 240437 D PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA; sucrose phosphorylase 238956..240437 Polaromonas naphthalenivorans CJ2 4688180 YP_980479.1 CDS Pnap_0233 NC_008781.1 240723 241160 R PFAM: UspA domain protein; KEGG: rfr:Rfer_2826 UspA; UspA domain-containing protein complement(240723..241160) Polaromonas naphthalenivorans CJ2 4688219 YP_980480.1 CDS Pnap_0234 NC_008781.1 241187 241393 R PFAM: protein of unknown function DUF1458; KEGG: pol:Bpro_0507 protein of unknown function DUF1458; hypothetical protein complement(241187..241393) Polaromonas naphthalenivorans CJ2 4688650 YP_980481.1 CDS Pnap_0235 NC_008781.1 241592 242113 D KEGG: pol:Bpro_0295 hypothetical protein; hypothetical protein 241592..242113 Polaromonas naphthalenivorans CJ2 4688890 YP_980482.1 CDS Pnap_0236 NC_008781.1 242106 243377 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0296 major facilitator superfamily MFS_1; major facilitator superfamily transporter 242106..243377 Polaromonas naphthalenivorans CJ2 4688929 YP_980483.1 CDS Pnap_0237 NC_008781.1 243374 243817 D PFAM: PTS system fructose subfamily IIA component; KEGG: pol:Bpro_0297 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA 243374..243817 Polaromonas naphthalenivorans CJ2 4689374 YP_980484.1 CDS Pnap_0238 NC_008781.1 243786 244055 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pol:Bpro_0298 HPrNtr; phosphotransferase system, phosphocarrier protein HPr 243786..244055 Polaromonas naphthalenivorans CJ2 4689184 YP_980485.1 CDS Pnap_0239 NC_008781.1 244239 246014 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: pol:Bpro_0299 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 244239..246014 Polaromonas naphthalenivorans CJ2 4689456 YP_980486.1 CDS Pnap_0240 NC_008781.1 246138 246980 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_0311 protein of unknown function DUF6, transmembrane; hypothetical protein complement(246138..246980) Polaromonas naphthalenivorans CJ2 4689498 YP_980487.1 CDS Pnap_0241 NC_008781.1 247236 247424 D hypothetical protein 247236..247424 Polaromonas naphthalenivorans CJ2 4689250 YP_980488.1 CDS Pnap_0242 NC_008781.1 247458 248456 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(247458..248456) Polaromonas naphthalenivorans CJ2 4689281 YP_980489.1 CDS Pnap_0243 NC_008781.1 248496 249170 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(248496..249170) Polaromonas naphthalenivorans CJ2 4689639 YP_980490.1 CDS Pnap_0244 NC_008781.1 249304 250065 R TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: xcv:XCVb0013 putative metal-binding protein, sec-C motif; yecA family protein complement(249304..250065) Polaromonas naphthalenivorans CJ2 4688628 YP_980491.1 CDS Pnap_0245 NC_008781.1 250139 250450 R PFAM: protein of unknown function DUF493; KEGG: pol:Bpro_0316 protein of unknown function DUF493; hypothetical protein complement(250139..250450) Polaromonas naphthalenivorans CJ2 4689777 YP_980492.1 CDS Pnap_0246 NC_008781.1 250453 251364 R PFAM: aminotransferase, class IV; KEGG: pol:Bpro_0317 aminotransferase, class IV; class IV aminotransferase complement(250453..251364) Polaromonas naphthalenivorans CJ2 4689221 YP_980493.1 CDS Pnap_0247 NC_008781.1 251459 251902 R KEGG: pol:Bpro_0319 hypothetical protein; hypothetical protein complement(251459..251902) Polaromonas naphthalenivorans CJ2 4689840 YP_980494.1 CDS Pnap_0248 NC_008781.1 252163 252714 D KEGG: rfr:Rfer_0113 putative ATP synthase protein I; putative ATP synthase protein I 252163..252714 Polaromonas naphthalenivorans CJ2 4689863 YP_980495.1 CDS Pnap_0249 NC_008781.1 252735 253628 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 252735..253628 Polaromonas naphthalenivorans CJ2 4689336 YP_980496.1 CDS Pnap_0250 NC_008781.1 253702 253950 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 253702..253950 Polaromonas naphthalenivorans CJ2 4689100 YP_980497.1 CDS Pnap_0251 NC_008781.1 253991 254461 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 253991..254461 Polaromonas naphthalenivorans CJ2 4688497 YP_980498.1 CDS Pnap_0252 NC_008781.1 254483 255022 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 254483..255022 Polaromonas naphthalenivorans CJ2 4687955 YP_980499.1 CDS Pnap_0253 NC_008781.1 255082 256635 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 255082..256635 Polaromonas naphthalenivorans CJ2 4687746 YP_980500.1 CDS Pnap_0254 NC_008781.1 256691 257557 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 256691..257557 Polaromonas naphthalenivorans CJ2 4687632 YP_980501.1 CDS Pnap_0255 NC_008781.1 257597 259021 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 257597..259021 Polaromonas naphthalenivorans CJ2 4687576 YP_980502.1 CDS atpC NC_008781.1 259103 259519 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 259103..259519 Polaromonas naphthalenivorans CJ2 4687677 YP_980503.1 CDS Pnap_0257 NC_008781.1 259641 260171 R PFAM: protein of unknown function DUF477; KEGG: pol:Bpro_0329 protein of unknown function DUF477; hypothetical protein complement(259641..260171) Polaromonas naphthalenivorans CJ2 4686895 YP_980504.1 CDS Pnap_0258 NC_008781.1 260180 261112 R PFAM: protein of unknown function DUF477; KEGG: pol:Bpro_0330 protein of unknown function DUF477; hypothetical protein complement(260180..261112) Polaromonas naphthalenivorans CJ2 4686294 YP_980505.1 CDS Pnap_0259 NC_008781.1 261125 261724 R PFAM: LemA family protein; KEGG: pol:Bpro_0331 LemA; LemA family protein complement(261125..261724) Polaromonas naphthalenivorans CJ2 4686864 YP_980506.1 CDS Pnap_0260 NC_008781.1 261839 262285 D KEGG: pol:Bpro_0333 hypothetical protein; hypothetical protein 261839..262285 Polaromonas naphthalenivorans CJ2 4686998 YP_980507.1 CDS Pnap_0261 NC_008781.1 262290 263309 D KEGG: pol:Bpro_0334 hydrolase of the alpha/beta-hydrolase fold-like; alpha/beta hydrolase 262290..263309 Polaromonas naphthalenivorans CJ2 4686127 YP_980508.1 CDS Pnap_0262 NC_008781.1 263367 263927 D KEGG: pol:Bpro_0335 hypothetical protein; hypothetical protein 263367..263927 Polaromonas naphthalenivorans CJ2 4686466 YP_980509.1 CDS Pnap_0263 NC_008781.1 264032 264913 R PFAM: cytochrome c, class I; KEGG: pol:Bpro_0336 cytochrome c, class I; class I cytochrome c complement(264032..264913) Polaromonas naphthalenivorans CJ2 4687051 YP_980510.1 CDS Pnap_0264 NC_008781.1 265468 265785 R PFAM: High potential iron-sulfur protein; KEGG: bxe:Bxe_A4333 putative high potential iron-sulfur protein; high potential iron-sulfur protein complement(265468..265785) Polaromonas naphthalenivorans CJ2 4688045 YP_980511.1 CDS Pnap_0265 NC_008781.1 266396 267367 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0596 uncharacterized protein UPF0065; hypothetical protein 266396..267367 Polaromonas naphthalenivorans CJ2 4686333 YP_980512.1 CDS Pnap_0266 NC_008781.1 267397 267774 D KEGG: pol:Bpro_3606 hypothetical protein; hypothetical protein 267397..267774 Polaromonas naphthalenivorans CJ2 4688447 YP_980513.1 CDS Pnap_0267 NC_008781.1 267782 269473 R PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_04499 long-chain acyl-CoA synthetases (AMP-forming); AMP-dependent synthetase and ligase complement(267782..269473) Polaromonas naphthalenivorans CJ2 4689083 YP_980514.1 CDS Pnap_0268 NC_008781.1 269697 270185 D KEGG: pol:Bpro_0388 putative lipoprotein transmembrane; putative lipoprotein transmembrane 269697..270185 Polaromonas naphthalenivorans CJ2 4690085 YP_980515.1 CDS Pnap_0269 NC_008781.1 270195 271421 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0389 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(270195..271421) Polaromonas naphthalenivorans CJ2 4688211 YP_980516.1 CDS Pnap_0270 NC_008781.1 271418 272278 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_0390 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase complement(271418..272278) Polaromonas naphthalenivorans CJ2 4686061 YP_980517.1 CDS Pnap_0271 NC_008781.1 272329 272790 D PFAM: protein of unknown function UPF0102; KEGG: pol:Bpro_0391 protein of unknown function UPF0102; hypothetical protein 272329..272790 Polaromonas naphthalenivorans CJ2 4688867 YP_980518.1 CDS Pnap_0272 NC_008781.1 272903 273502 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 272903..273502 Polaromonas naphthalenivorans CJ2 4687668 YP_980519.1 CDS Pnap_0273 NC_008781.1 273499 274164 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0393 transport-associated; transporter 273499..274164 Polaromonas naphthalenivorans CJ2 4688041 YP_980520.1 CDS Pnap_0274 NC_008781.1 274213 275115 R PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_0394 2-hydroxy-3-oxopropionate reductase; 2-hydroxy-3-oxopropionate reductase complement(274213..275115) Polaromonas naphthalenivorans CJ2 4689631 YP_980521.1 CDS Pnap_0276 NC_008781.1 275673 276632 D PFAM: transposase, IS4 family protein; KEGG: bte:BTH_II0087 transposase; transposase, IS4 family protein 275673..276632 Polaromonas naphthalenivorans CJ2 4688153 YP_980522.1 CDS Pnap_0277 NC_008781.1 277439 278071 R PFAM: cyclic nucleotide-binding; KEGG: pfo:Pfl_1398 cyclic nucleotide-binding (cNMP-BD) protein; cyclic nucleotide-binding protein complement(277439..278071) Polaromonas naphthalenivorans CJ2 4688662 YP_980523.1 CDS Pnap_0278 NC_008781.1 278104 279147 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0396 twitching motility protein; twitching motility protein complement(278104..279147) Polaromonas naphthalenivorans CJ2 4687337 YP_980524.1 CDS Pnap_0279 NC_008781.1 279280 280515 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB 279280..280515 Polaromonas naphthalenivorans CJ2 4686585 YP_980525.1 CDS Pnap_0280 NC_008781.1 280508 281287 D PFAM: alanine racemase domain protein; KEGG: pol:Bpro_0397 protein of unknown function UPF0001; alanine racemase domain-containing protein 280508..281287 Polaromonas naphthalenivorans CJ2 4687274 YP_980526.1 CDS Pnap_0281 NC_008781.1 281293 283803 R KEGG: pol:Bpro_0428 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(281293..283803) Polaromonas naphthalenivorans CJ2 4687449 YP_980527.1 CDS Pnap_0283 NC_008781.1 284971 285249 D hypothetical protein 284971..285249 Polaromonas naphthalenivorans CJ2 4688724 YP_980528.1 CDS Pnap_0284 NC_008781.1 285312 285641 D KEGG: pol:Bpro_0429 hypothetical protein; hypothetical protein 285312..285641 Polaromonas naphthalenivorans CJ2 4688591 YP_980529.1 CDS Pnap_0285 NC_008781.1 285691 287121 D PFAM: glycosyl transferase, family 2; KEGG: reu:Reut_B4949 glycosyl transferase, family 2; glycosyl transferase family protein 285691..287121 Polaromonas naphthalenivorans CJ2 4688641 YP_980530.1 CDS Pnap_0286 NC_008781.1 287118 288161 D KEGG: reu:Reut_B4948 hypothetical protein; hypothetical protein 287118..288161 Polaromonas naphthalenivorans CJ2 4689411 YP_980531.1 CDS Pnap_0287 NC_008781.1 288158 289177 D KEGG: bcn:Bcen_0847 hypothetical protein; hypothetical protein 288158..289177 Polaromonas naphthalenivorans CJ2 4689466 YP_980532.1 CDS Pnap_0288 NC_008781.1 289239 290069 D KEGG: bte:BTH_II0344 lipoprotein, putative; putative lipoprotein 289239..290069 Polaromonas naphthalenivorans CJ2 4690141 YP_980533.1 CDS Pnap_0289 NC_008781.1 290079 290918 D KEGG: bte:BTH_II0345 hypothetical protein; hypothetical protein 290079..290918 Polaromonas naphthalenivorans CJ2 4690209 YP_980534.1 CDS Pnap_0290 NC_008781.1 291076 291633 D PFAM: protein of unknown function DUF583; KEGG: pol:Bpro_0430 protein of unknown function DUF583; hypothetical protein 291076..291633 Polaromonas naphthalenivorans CJ2 4689779 YP_980535.1 CDS Pnap_0291 NC_008781.1 291738 292463 R PFAM: LrgB family protein; KEGG: pol:Bpro_0431 LrgB-like protein; LrgB family protein complement(291738..292463) Polaromonas naphthalenivorans CJ2 4689614 YP_980536.1 CDS Pnap_0292 NC_008781.1 292456 292839 R PFAM: LrgA family protein; KEGG: pol:Bpro_0432 LrgA; LrgA family protein complement(292456..292839) Polaromonas naphthalenivorans CJ2 4689794 YP_980537.1 CDS Pnap_0293 NC_008781.1 292879 294381 R PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0433 FAD linked oxidase-like; FAD linked oxidase domain-containing protein complement(292879..294381) Polaromonas naphthalenivorans CJ2 4688995 YP_980538.1 CDS Pnap_0294 NC_008781.1 294562 295128 D PFAM: protein of unknown function DUF820; KEGG: gvi:gll1561 hypothetical protein; hypothetical protein 294562..295128 Polaromonas naphthalenivorans CJ2 4686838 YP_980539.1 CDS Pnap_0295 NC_008781.1 295225 295557 R hypothetical protein complement(295225..295557) Polaromonas naphthalenivorans CJ2 4686243 YP_980540.1 CDS Pnap_0296 NC_008781.1 295621 296607 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0437 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(295621..296607) Polaromonas naphthalenivorans CJ2 4687636 YP_980541.1 CDS purU NC_008781.1 296615 297463 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(296615..297463) Polaromonas naphthalenivorans CJ2 4687601 YP_980542.1 CDS Pnap_0298 NC_008781.1 297499 298380 R KEGG: pol:Bpro_0441 hypothetical protein; hypothetical protein complement(297499..298380) Polaromonas naphthalenivorans CJ2 4686981 YP_980543.1 CDS Pnap_0299 NC_008781.1 298517 299653 R PFAM: Extracellular ligand-binding receptor; KEGG: rso:RS03096 putative Leu/Ile/Val-binding lipoprotein transmembrane; extracellular ligand-binding receptor complement(298517..299653) Polaromonas naphthalenivorans CJ2 4687456 YP_980544.1 CDS Pnap_0300 NC_008781.1 299880 300161 R KEGG: pol:Bpro_0443 hypothetical protein; hypothetical protein complement(299880..300161) Polaromonas naphthalenivorans CJ2 4687634 YP_980545.1 CDS Pnap_0301 NC_008781.1 300238 301428 R KEGG: pol:Bpro_0444 hypothetical protein; hypothetical protein complement(300238..301428) Polaromonas naphthalenivorans CJ2 4687983 YP_980546.1 CDS Pnap_0302 NC_008781.1 301458 302441 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_0446 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 301458..302441 Polaromonas naphthalenivorans CJ2 4687768 YP_980547.1 CDS Pnap_0303 NC_008781.1 302530 304749 R KEGG: bte:BTH_II0346 hypothetical protein; hypothetical protein complement(302530..304749) Polaromonas naphthalenivorans CJ2 4687926 YP_980548.1 CDS Pnap_0304 NC_008781.1 305021 305269 D hypothetical protein 305021..305269 Polaromonas naphthalenivorans CJ2 4686504 YP_980549.1 CDS Pnap_0305 NC_008781.1 305357 306346 D KEGG: pol:Bpro_0449 hypothetical protein; hypothetical protein 305357..306346 Polaromonas naphthalenivorans CJ2 4688595 YP_980550.1 CDS Pnap_0306 NC_008781.1 306390 307733 D PFAM: domain of unknown function DUF1745; KEGG: pol:Bpro_0450 hypothetical protein; hypothetical protein 306390..307733 Polaromonas naphthalenivorans CJ2 4690004 YP_980551.1 CDS Pnap_0307 NC_008781.1 307738 308469 R SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0454 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein complement(307738..308469) Polaromonas naphthalenivorans CJ2 4686336 YP_980552.1 CDS Pnap_0308 NC_008781.1 308593 309492 D KEGG: pol:Bpro_0456 hypothetical protein; hypothetical protein 308593..309492 Polaromonas naphthalenivorans CJ2 4686299 YP_980553.1 CDS Pnap_0309 NC_008781.1 309489 311465 D PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0457 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 309489..311465 Polaromonas naphthalenivorans CJ2 4686358 YP_980554.1 CDS Pnap_0310 NC_008781.1 311612 312070 D KEGG: pol:Bpro_0459 hypothetical protein; hypothetical protein 311612..312070 Polaromonas naphthalenivorans CJ2 4686443 YP_980555.1 CDS Pnap_0311 NC_008781.1 312085 312903 D KEGG: pol:Bpro_0460 hypothetical protein; hypothetical protein 312085..312903 Polaromonas naphthalenivorans CJ2 4686078 YP_980556.1 CDS Pnap_0312 NC_008781.1 312927 314201 D KEGG: tbd:Tbd_2217 hypothetical protein; hypothetical protein 312927..314201 Polaromonas naphthalenivorans CJ2 4686543 YP_980557.1 CDS Pnap_0313 NC_008781.1 314236 314685 D PFAM: YiaAB two helix domain protein; KEGG: pol:Bpro_0458 hypothetical protein; YiaAB two helix domain-containing protein 314236..314685 Polaromonas naphthalenivorans CJ2 4686168 YP_980558.1 CDS Pnap_0314 NC_008781.1 314705 315595 R hypothetical protein complement(314705..315595) Polaromonas naphthalenivorans CJ2 4686196 YP_980559.1 CDS Pnap_0315 NC_008781.1 315758 316816 D KEGG: pol:Bpro_0461 hypothetical protein; hypothetical protein 315758..316816 Polaromonas naphthalenivorans CJ2 4686587 YP_980560.1 CDS Pnap_0316 NC_008781.1 316942 318291 D KEGG: pol:Bpro_4510 hypothetical protein; hypothetical protein 316942..318291 Polaromonas naphthalenivorans CJ2 4686654 YP_980561.1 CDS Pnap_0317 NC_008781.1 318385 320175 R KEGG: pol:Bpro_0463 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like; glycosyltransferase complement(318385..320175) Polaromonas naphthalenivorans CJ2 4686660 YP_980562.1 CDS Pnap_0318 NC_008781.1 320195 320683 R PFAM: GtrA family protein; KEGG: pol:Bpro_0464 GtrA-like protein; GtrA family protein complement(320195..320683) Polaromonas naphthalenivorans CJ2 4686686 YP_980563.1 CDS Pnap_0319 NC_008781.1 320683 321924 R PFAM: glycosyl transferase, family 9; KEGG: pol:Bpro_0465 glycosyl transferase, family 9; glycosyl transferase family protein complement(320683..321924) Polaromonas naphthalenivorans CJ2 4687266 YP_980564.1 CDS tgt NC_008781.1 321928 323091 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(321928..323091) Polaromonas naphthalenivorans CJ2 4687273 YP_980565.1 CDS Pnap_0321 NC_008781.1 323114 324172 R TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: pol:Bpro_0467 S-adenosylmethionine; S-adenosylmethionine--tRNA-ribosyltransferase- isomerase complement(323114..324172) Polaromonas naphthalenivorans CJ2 4687331 YP_980566.1 CDS Pnap_0322 NC_008781.1 324192 326339 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 324192..326339 Polaromonas naphthalenivorans CJ2 4686962 YP_980567.1 CDS Pnap_0323 NC_008781.1 326359 326760 R hypothetical protein complement(326359..326760) Polaromonas naphthalenivorans CJ2 4687341 YP_980568.1 CDS Pnap_0324 NC_008781.1 326904 327860 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0472 transcriptional regulator, LysR family; LysR family transcriptional regulator 326904..327860 Polaromonas naphthalenivorans CJ2 4687345 YP_980569.1 CDS Pnap_0325 NC_008781.1 327973 328497 D PFAM: Ferritin, Dps family protein; KEGG: ana:all4145 probable DNA-binding stress protein; Ferritin, Dps family protein 327973..328497 Polaromonas naphthalenivorans CJ2 4687367 YP_980570.1 CDS Pnap_0326 NC_008781.1 328532 329401 D TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: pol:Bpro_0474 4-hydroxybenzoate polyprenyl transferase; 4-hydroxybenzoate polyprenyltransferase 328532..329401 Polaromonas naphthalenivorans CJ2 4687368 YP_980571.1 CDS Pnap_0327 NC_008781.1 329984 330823 R KEGG: pol:Bpro_0475 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase complement(329984..330823) Polaromonas naphthalenivorans CJ2 4687381 YP_980572.1 CDS Pnap_0328 NC_008781.1 330919 332412 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: pol:Bpro_0476 glycerol kinase; glycerol kinase complement(330919..332412) Polaromonas naphthalenivorans CJ2 4687193 YP_980573.1 CDS Pnap_0329 NC_008781.1 332614 334200 D PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0484 FAD dependent oxidoreductase; FAD dependent oxidoreductase 332614..334200 Polaromonas naphthalenivorans CJ2 4687961 YP_980574.1 CDS rplN NC_008781.1 334415 334783 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 334415..334783 Polaromonas naphthalenivorans CJ2 4687972 YP_980575.1 CDS rplX NC_008781.1 334796 335116 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 334796..335116 Polaromonas naphthalenivorans CJ2 4688059 YP_980576.1 CDS rplE NC_008781.1 335119 335658 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 335119..335658 Polaromonas naphthalenivorans CJ2 4688152 YP_980577.1 CDS rpsN NC_008781.1 335667 335972 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 335667..335972 Polaromonas naphthalenivorans CJ2 4688125 YP_980578.1 CDS rpsH NC_008781.1 335991 336386 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 335991..336386 Polaromonas naphthalenivorans CJ2 4688162 YP_980579.1 CDS rplF NC_008781.1 336411 336944 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 336411..336944 Polaromonas naphthalenivorans CJ2 4688170 YP_980580.1 CDS rplR NC_008781.1 336956 337321 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 336956..337321 Polaromonas naphthalenivorans CJ2 4688224 YP_980581.1 CDS rpsE NC_008781.1 337339 337857 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 337339..337857 Polaromonas naphthalenivorans CJ2 4688726 YP_980582.1 CDS rpmD NC_008781.1 337871 338053 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 337871..338053 Polaromonas naphthalenivorans CJ2 4688230 YP_980583.1 CDS Pnap_0339 NC_008781.1 338067 338498 D PFAM: ribosomal protein L15; KEGG: pol:Bpro_0494 ribosomal protein L15; 50S ribosomal protein L15 338067..338498 Polaromonas naphthalenivorans CJ2 4688732 YP_980584.1 CDS secY NC_008781.1 338518 339825 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 338518..339825 Polaromonas naphthalenivorans CJ2 4688766 YP_980585.1 CDS rpmJ NC_008781.1 339911 340024 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 339911..340024 Polaromonas naphthalenivorans CJ2 4688802 YP_980586.1 CDS rpsM NC_008781.1 340050 340415 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 340050..340415 Polaromonas naphthalenivorans CJ2 4688612 YP_980587.1 CDS Pnap_0343 NC_008781.1 340429 340833 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 340429..340833 Polaromonas naphthalenivorans CJ2 4688824 YP_980588.1 CDS rpsD NC_008781.1 340964 341587 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 340964..341587 Polaromonas naphthalenivorans CJ2 4688859 YP_980589.1 CDS Pnap_0345 NC_008781.1 341683 342675 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 341683..342675 Polaromonas naphthalenivorans CJ2 4688858 YP_980590.1 CDS rplQ NC_008781.1 342759 343160 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 342759..343160 Polaromonas naphthalenivorans CJ2 4688866 YP_980591.1 CDS Pnap_0347 NC_008781.1 343429 343887 D KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein 343429..343887 Polaromonas naphthalenivorans CJ2 4688771 YP_980592.1 CDS Pnap_0348 NC_008781.1 343907 344383 D KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 343907..344383 Polaromonas naphthalenivorans CJ2 4689364 YP_980593.1 CDS Pnap_0349 NC_008781.1 344375 345706 R PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4288 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(344375..345706) Polaromonas naphthalenivorans CJ2 4689439 YP_980594.1 CDS Pnap_0350 NC_008781.1 345932 347137 R PFAM: phospholipase A1; KEGG: pol:Bpro_4284 phospholipase A1; phospholipase A1 complement(345932..347137) Polaromonas naphthalenivorans CJ2 4689410 YP_980595.1 CDS Pnap_0351 NC_008781.1 347159 347731 R KEGG: pol:Bpro_4283 hypothetical protein; hypothetical protein complement(347159..347731) Polaromonas naphthalenivorans CJ2 4689176 YP_980596.1 CDS Pnap_0352 NC_008781.1 347808 349937 R PFAM: UvrD/REP helicase; KEGG: pol:Bpro_4281 UvrD/REP helicase; UvrD/REP helicase complement(347808..349937) Polaromonas naphthalenivorans CJ2 4689461 YP_980597.1 CDS Pnap_0353 NC_008781.1 350042 351274 R TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase complement(350042..351274) Polaromonas naphthalenivorans CJ2 4689493 YP_980598.1 CDS Pnap_0354 NC_008781.1 351271 353049 R putative bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia; putative bifunctional OHCU decarboxylase/allantoate amidohydrolase complement(351271..353049) Polaromonas naphthalenivorans CJ2 4689506 YP_980599.1 CDS Pnap_0355 NC_008781.1 353046 353999 R PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1424 polysaccharide deacetylase; polysaccharide deacetylase complement(353046..353999) Polaromonas naphthalenivorans CJ2 4689520 YP_980600.1 CDS Pnap_0356 NC_008781.1 354171 354527 D PFAM: Transthyretin; KEGG: atc:AGR_C_4223 conserved hypothetical protein PA1518; transthyretin 354171..354527 Polaromonas naphthalenivorans CJ2 4689616 YP_980601.1 CDS Pnap_0357 NC_008781.1 354524 355741 D PFAM: protein of unknown function DUF989; KEGG: pol:Bpro_1430 putative transmembrane protein; hypothetical protein 354524..355741 Polaromonas naphthalenivorans CJ2 4689579 YP_980602.1 CDS Pnap_0358 NC_008781.1 355874 356878 R PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bur:Bcep18194_A6396 AAA ATPase, central region; ATPase central domain-containing protein complement(355874..356878) Polaromonas naphthalenivorans CJ2 4689640 YP_980603.1 CDS Pnap_0359 NC_008781.1 357176 359512 D KEGG: pol:Bpro_4276 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 357176..359512 Polaromonas naphthalenivorans CJ2 4689667 YP_980604.1 CDS Pnap_0360 NC_008781.1 359491 360561 R KEGG: pen:PSEEN4898 hypothetical protein; hypothetical protein complement(359491..360561) Polaromonas naphthalenivorans CJ2 4690041 YP_980605.1 CDS Pnap_0361 NC_008781.1 360685 361191 D hypothetical protein 360685..361191 Polaromonas naphthalenivorans CJ2 4690179 YP_980606.1 CDS Pnap_0362 NC_008781.1 361263 363392 R KEGG: pol:Bpro_4265 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; primosomal protein N' complement(361263..363392) Polaromonas naphthalenivorans CJ2 4690112 YP_980607.1 CDS hemE NC_008781.1 363768 364877 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(363768..364877) Polaromonas naphthalenivorans CJ2 4690199 YP_980608.1 CDS Pnap_0364 NC_008781.1 364982 365347 D KEGG: pol:Bpro_4263 hypothetical protein; hypothetical protein 364982..365347 Polaromonas naphthalenivorans CJ2 4690205 YP_980609.1 CDS Pnap_0365 NC_008781.1 365438 365770 R hypothetical protein complement(365438..365770) Polaromonas naphthalenivorans CJ2 4689809 YP_980610.1 CDS Pnap_0366 NC_008781.1 365781 366377 R hypothetical protein complement(365781..366377) Polaromonas naphthalenivorans CJ2 4689941 YP_980611.1 CDS Pnap_0367 NC_008781.1 366415 366819 R PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 Roadblock/LC7; roadblock/LC7 family protein complement(366415..366819) Polaromonas naphthalenivorans CJ2 4689965 YP_980612.1 CDS Pnap_0368 NC_008781.1 366906 367313 R hypothetical protein complement(366906..367313) Polaromonas naphthalenivorans CJ2 4689947 YP_980613.1 CDS Pnap_0369 NC_008781.1 367341 368777 R PFAM: Dual specificity protein phosphatase; ABC transporter related; SMART: AAA ATPase; protein tyrosine phosphatase, catalytic region; KEGG: sit:TM1040_3766 ABC transporter related; ABC transporter-like protein complement(367341..368777) Polaromonas naphthalenivorans CJ2 4689820 YP_980614.1 CDS Pnap_0370 NC_008781.1 368774 369337 R PFAM: protein of unknown function, ATP binding; KEGG: noc:Noc_0133 conserved hypothetical ATP binding protein; hypothetical protein complement(368774..369337) Polaromonas naphthalenivorans CJ2 4689742 YP_980615.1 CDS Pnap_0371 NC_008781.1 369366 369740 R hypothetical protein complement(369366..369740) Polaromonas naphthalenivorans CJ2 4689723 YP_980616.1 CDS Pnap_0372 NC_008781.1 369880 371205 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_4260 methyltransferase type 12; type 12 methyltransferase complement(369880..371205) Polaromonas naphthalenivorans CJ2 4689699 YP_980617.1 CDS Pnap_0373 NC_008781.1 371606 372061 D KEGG: sde:Sde_2347 hypothetical protein; hypothetical protein 371606..372061 Polaromonas naphthalenivorans CJ2 4689581 YP_980618.1 CDS Pnap_0374 NC_008781.1 372171 372905 R KEGG: pol:Bpro_4259 putative lipoprotein; putative lipoprotein complement(372171..372905) Polaromonas naphthalenivorans CJ2 4689618 YP_980619.1 CDS Pnap_0375 NC_008781.1 372909 373373 R PFAM: CoA-binding domain protein; KEGG: pol:Bpro_4258 CoA-binding; CoA-binding domain-containing protein complement(372909..373373) Polaromonas naphthalenivorans CJ2 4689575 YP_980620.1 CDS Pnap_0376 NC_008781.1 373443 375590 R PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: pol:Bpro_4257 thiol-disulfide interchange protein DsbD-like; cytochrome c biogenesis protein transmembrane subunit complement(373443..375590) Polaromonas naphthalenivorans CJ2 4689566 YP_980621.1 CDS Pnap_0377 NC_008781.1 375774 376268 D PFAM: helix-turn-helix domain protein; KEGG: plu:plu2740 hypothetical protein; XRE family transcriptional regulator 375774..376268 Polaromonas naphthalenivorans CJ2 4689528 YP_980622.1 CDS Pnap_0378 NC_008781.1 376278 376976 D KEGG: ret:RHE_CH01166 hypothetical protein; hypothetical protein 376278..376976 Polaromonas naphthalenivorans CJ2 4689503 YP_980623.1 CDS Pnap_0379 NC_008781.1 377049 377372 R PFAM: protein of unknown function DUF167; KEGG: pol:Bpro_2664 protein of unknown function DUF167; hypothetical protein complement(377049..377372) Polaromonas naphthalenivorans CJ2 4689458 YP_980624.1 CDS Pnap_0380 NC_008781.1 377538 378107 D PFAM: cytochrome B561; KEGG: rfr:Rfer_2432 cytochrome b561; cytochrome B561 377538..378107 Polaromonas naphthalenivorans CJ2 4689440 YP_980625.1 CDS Pnap_0381 NC_008781.1 378109 378603 D KEGG: gsu:GSU2680 hypothetical protein; hypothetical protein 378109..378603 Polaromonas naphthalenivorans CJ2 4689380 YP_980626.1 CDS Pnap_0382 NC_008781.1 378619 378939 D KEGG: pol:Bpro_1262 hypothetical protein; hypothetical protein 378619..378939 Polaromonas naphthalenivorans CJ2 4689415 YP_980627.1 CDS Pnap_0383 NC_008781.1 378995 379996 R KEGG: bbr:BB1683 phage-related hypothetical protein; hypothetical protein complement(378995..379996) Polaromonas naphthalenivorans CJ2 4689771 YP_980628.1 CDS Pnap_0384 NC_008781.1 380445 382046 R KEGG: gsu:GSU0552 hypothetical protein; hypothetical protein complement(380445..382046) Polaromonas naphthalenivorans CJ2 4689843 YP_980629.1 CDS Pnap_0385 NC_008781.1 382417 382674 D hypothetical protein 382417..382674 Polaromonas naphthalenivorans CJ2 4689902 YP_980630.1 CDS Pnap_0386 NC_008781.1 382949 383554 D SMART: helix-turn-helix domain protein; KEGG: putative transcriptional regulator; helix-turn-helix domain-containing protein 382949..383554 Polaromonas naphthalenivorans CJ2 4689977 YP_980631.1 CDS Pnap_0387 NC_008781.1 383746 385404 D PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pol:Bpro_4256 radical SAM; radical SAM domain-containing protein 383746..385404 Polaromonas naphthalenivorans CJ2 4689852 YP_980632.1 CDS Pnap_0388 NC_008781.1 385516 385935 D KEGG: ilo:IL0085 uncharacterized conserved coiled coil protein; hypothetical protein 385516..385935 Polaromonas naphthalenivorans CJ2 4689914 YP_980633.1 CDS Pnap_0389 NC_008781.1 385951 387585 D TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: rfr:Rfer_3009 chaperonin GroEL; chaperonin GroEL 385951..387585 Polaromonas naphthalenivorans CJ2 4689966 YP_980634.1 CDS Pnap_0390 NC_008781.1 387609 388067 D KEGG: rfr:Rfer_3010 hypothetical protein; hypothetical protein 387609..388067 Polaromonas naphthalenivorans CJ2 4689943 YP_980635.1 CDS Pnap_0391 NC_008781.1 388119 388547 D PFAM: UspA domain protein; KEGG: rpa:RPA3434 universal stress protein (Usp); UspA domain-containing protein 388119..388547 Polaromonas naphthalenivorans CJ2 4689833 YP_980636.1 CDS Pnap_0392 NC_008781.1 388540 390396 R KEGG: pol:Bpro_0723 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(388540..390396) Polaromonas naphthalenivorans CJ2 4689072 YP_980637.1 CDS Pnap_0393 NC_008781.1 390553 390900 D KEGG: bxe:Bxe_B0447 hypothetical protein; hypothetical protein 390553..390900 Polaromonas naphthalenivorans CJ2 4689054 YP_980638.1 CDS Pnap_0394 NC_008781.1 390986 391855 D PFAM: Creatininase; KEGG: pol:Bpro_4255 creatininase; creatininase 390986..391855 Polaromonas naphthalenivorans CJ2 4688984 YP_980639.1 CDS Pnap_0395 NC_008781.1 392221 393561 D KEGG: pfo:Pfl_1639 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 392221..393561 Polaromonas naphthalenivorans CJ2 4689013 YP_980640.1 CDS Pnap_0396 NC_008781.1 393640 394308 R PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_4246 phosphoglycerate mutase; phosphoglycerate mutase complement(393640..394308) Polaromonas naphthalenivorans CJ2 4687030 YP_980641.1 CDS Pnap_0397 NC_008781.1 394345 396612 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ade:Adeh_2956 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase complement(394345..396612) Polaromonas naphthalenivorans CJ2 4687062 YP_980642.1 CDS Pnap_0398 NC_008781.1 396843 397241 R PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(396843..397241) Polaromonas naphthalenivorans CJ2 4686984 YP_980643.1 CDS Pnap_0399 NC_008781.1 397480 398220 R hypothetical protein complement(397480..398220) Polaromonas naphthalenivorans CJ2 4686995 YP_980644.1 CDS Pnap_0400 NC_008781.1 398447 399379 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pol:Bpro_4242 phenazine biosynthesis PhzC/PhzF protein; PhzF family phenazine biosynthesis protein complement(398447..399379) Polaromonas naphthalenivorans CJ2 4686316 YP_980645.1 CDS Pnap_0401 NC_008781.1 399420 400640 R PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_4240 aminotransferase, class I and II; GntR family transcriptional regulator complement(399420..400640) Polaromonas naphthalenivorans CJ2 4686411 YP_980646.1 CDS Pnap_0402 NC_008781.1 400694 401629 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_4235 protein of unknown function DUF6, transmembrane; hypothetical protein complement(400694..401629) Polaromonas naphthalenivorans CJ2 4686440 YP_980647.1 CDS Pnap_0403 NC_008781.1 401856 403277 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: pol:Bpro_4233 transcriptional regulator, GntR family; GntR family transcriptional regulator 401856..403277 Polaromonas naphthalenivorans CJ2 4686473 YP_980648.1 CDS Pnap_0404 NC_008781.1 403967 404509 D TIGRFAM: conserved repeat domain; KEGG: pcr:Pcryo_1048 hypothetical protein; hypothetical protein 403967..404509 Polaromonas naphthalenivorans CJ2 4686507 YP_980649.1 CDS Pnap_0405 NC_008781.1 404675 407608 D TIGRFAM: conserved repeat domain; KEGG: sme:SMc01711 hypothetical protein; hypothetical protein 404675..407608 Polaromonas naphthalenivorans CJ2 4686538 YP_980650.1 CDS Pnap_0406 NC_008781.1 407611 414867 D TIGRFAM: conserved repeat domain; KEGG: pcr:Pcryo_1046 protein of unknown function DUF11; hypothetical protein 407611..414867 Polaromonas naphthalenivorans CJ2 4686545 YP_980651.1 CDS Pnap_0407 NC_008781.1 415038 418895 D TIGRFAM: conserved repeat domain; KEGG: mmu:239611 mucin 19; hypothetical protein 415038..418895 Polaromonas naphthalenivorans CJ2 4686693 YP_980652.1 CDS Pnap_0408 NC_008781.1 419056 419238 R hypothetical protein complement(419056..419238) Polaromonas naphthalenivorans CJ2 4686714 YP_980653.1 CDS Pnap_0409 NC_008781.1 419263 419430 R KEGG: reu:Reut_C5975 transposase, IS4; transposase, IS4 complement(419263..419430) Polaromonas naphthalenivorans CJ2 4686727 YP_980654.1 CDS Pnap_0410 NC_008781.1 419901 420377 R KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 complement(419901..420377) Polaromonas naphthalenivorans CJ2 4686733 YP_980655.1 CDS Pnap_0411 NC_008781.1 420397 420855 R KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein complement(420397..420855) Polaromonas naphthalenivorans CJ2 4686751 YP_980656.1 CDS Pnap_0412 NC_008781.1 421048 422730 R PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_4230 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(421048..422730) Polaromonas naphthalenivorans CJ2 4686756 YP_980657.1 CDS Pnap_0413 NC_008781.1 422891 424816 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4229 ABC transporter related; ABC transporter-like protein complement(422891..424816) Polaromonas naphthalenivorans CJ2 4686795 YP_980658.1 CDS Pnap_0414 NC_008781.1 431209 431571 D hypothetical protein 431209..431571 Polaromonas naphthalenivorans CJ2 4689736 YP_980659.1 CDS Pnap_0415 NC_008781.1 431574 433643 D PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; Recombinase; KEGG: ret:RHE_PA00038 probable insertion sequence transposase protein; recombinase 431574..433643 Polaromonas naphthalenivorans CJ2 4686282 YP_980660.1 CDS Pnap_0416 NC_008781.1 433656 434240 R KEGG: rfr:Rfer_2711 transposase IS66; transposase IS66 complement(433656..434240) Polaromonas naphthalenivorans CJ2 4687646 YP_980661.1 CDS Pnap_0418 NC_008781.1 434614 435651 R KEGG: xom:XOO_3993 ISXo7 transposase; ISXo7 transposase complement(434614..435651) Polaromonas naphthalenivorans CJ2 4689531 YP_980662.1 CDS Pnap_0419 NC_008781.1 435689 436183 R KEGG: eba:ebA6355 transposase, IS4 family; IS4 family transposase complement(435689..436183) Polaromonas naphthalenivorans CJ2 4687660 YP_980663.1 CDS Pnap_0420 NC_008781.1 436531 437613 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase; transposase IS116/IS110/IS902 family protein complement(436531..437613) Polaromonas naphthalenivorans CJ2 4687654 YP_980664.1 CDS Pnap_0421 NC_008781.1 437610 438173 R KEGG: sgl:SG2354 hypothetical protein; hypothetical protein complement(437610..438173) Polaromonas naphthalenivorans CJ2 4687271 YP_980665.1 CDS Pnap_0422 NC_008781.1 438226 439050 R PFAM: transposase IS66; KEGG: bxe:Bxe_B1865 transposase IS66 family; transposase IS66 complement(438226..439050) Polaromonas naphthalenivorans CJ2 4687280 YP_980666.1 CDS Pnap_0423 NC_008781.1 439115 439402 R PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein complement(439115..439402) Polaromonas naphthalenivorans CJ2 4687148 YP_980667.1 CDS Pnap_0424 NC_008781.1 439444 439854 R PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein complement(439444..439854) Polaromonas naphthalenivorans CJ2 4687054 YP_980668.1 CDS Pnap_0425 NC_008781.1 439931 441178 R PFAM: transposase, IS4 family protein; KEGG: bxe:Bxe_C0019 putative transposase; transposase, IS4 family protein complement(439931..441178) Polaromonas naphthalenivorans CJ2 4687311 YP_980669.1 CDS Pnap_0426 NC_008781.1 441484 442551 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 441484..442551 Polaromonas naphthalenivorans CJ2 4686874 YP_980670.1 CDS Pnap_0427 NC_008781.1 442923 443963 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bxe:Bxe_C0485 putative transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 442923..443963 Polaromonas naphthalenivorans CJ2 4687379 YP_980671.1 CDS Pnap_0428 NC_008781.1 444129 444617 D KEGG: nha:Nham_3929 putative transposase; hypothetical protein 444129..444617 Polaromonas naphthalenivorans CJ2 4687205 YP_980672.1 CDS Pnap_0429 NC_008781.1 444542 445519 R PFAM: Integrase, catalytic region; KEGG: gox:GOX2195 transposase (class III); integrase catalytic subunit complement(444542..445519) Polaromonas naphthalenivorans CJ2 4687464 YP_980673.1 CDS Pnap_0430 NC_008781.1 445572 445871 R PFAM: transposase IS3/IS911 family protein; KEGG: sat:SYN_03173 transposase; transposase IS3/IS911 family protein complement(445572..445871) Polaromonas naphthalenivorans CJ2 4687403 YP_980674.1 CDS Pnap_0431 NC_008781.1 446057 446986 R PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4226 beta-lactamase-like; beta-lactamase domain-containing protein complement(446057..446986) Polaromonas naphthalenivorans CJ2 4687471 YP_980675.1 CDS Pnap_0432 NC_008781.1 446986 447756 R KEGG: pol:Bpro_4224 hypothetical protein; hypothetical protein complement(446986..447756) Polaromonas naphthalenivorans CJ2 4687565 YP_980676.1 CDS Pnap_0433 NC_008781.1 447789 448346 D KEGG: pol:Bpro_4223 hypothetical protein; hypothetical protein 447789..448346 Polaromonas naphthalenivorans CJ2 4687704 YP_980677.1 CDS Pnap_0434 NC_008781.1 448360 449985 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: pol:Bpro_4222 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 448360..449985 Polaromonas naphthalenivorans CJ2 4687603 YP_980678.1 CDS Pnap_0435 NC_008781.1 450012 450920 D KEGG: pol:Bpro_4221 putative lipase transmembrane protein; putative lipase transmembrane protein 450012..450920 Polaromonas naphthalenivorans CJ2 4687623 YP_980679.1 CDS Pnap_0436 NC_008781.1 451228 452340 D PFAM: response regulator receiver; KEGG: dra:DR2556 response regulator; response regulator receiver protein 451228..452340 Polaromonas naphthalenivorans CJ2 4687684 YP_980680.1 CDS Pnap_0437 NC_008781.1 452337 455729 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; multi-sensor hybrid histidine kinase 452337..455729 Polaromonas naphthalenivorans CJ2 4687679 YP_980681.1 CDS Pnap_0438 NC_008781.1 455888 456715 D PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 455888..456715 Polaromonas naphthalenivorans CJ2 4688398 YP_980682.1 CDS Pnap_0439 NC_008781.1 456915 457784 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: pol:Bpro_4209 CBS domain; hypothetical protein 456915..457784 Polaromonas naphthalenivorans CJ2 4688503 YP_980683.1 CDS Pnap_0440 NC_008781.1 457921 459471 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_4208 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 457921..459471 Polaromonas naphthalenivorans CJ2 4688336 YP_980684.1 CDS Pnap_0441 NC_008781.1 459474 460394 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4207 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(459474..460394) Polaromonas naphthalenivorans CJ2 4687998 YP_980685.1 CDS Pnap_0442 NC_008781.1 460542 461681 D KEGG: pol:Bpro_4206 L-asparaginases, type II; TIGRFAM: L-asparaginases, type II; PFAM: Asparaginase/glutaminase; L-asparaginase 460542..461681 Polaromonas naphthalenivorans CJ2 4687978 YP_980686.1 CDS glyQ NC_008781.1 461823 462749 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 461823..462749 Polaromonas naphthalenivorans CJ2 4687723 YP_980687.1 CDS Pnap_0444 NC_008781.1 462753 464888 D KEGG: rfr:Rfer_3695 glycine--tRNA ligase; glycine--tRNA ligase 462753..464888 Polaromonas naphthalenivorans CJ2 4688195 YP_980688.1 CDS Pnap_0445 NC_008781.1 464914 465564 D hypothetical protein 464914..465564 Polaromonas naphthalenivorans CJ2 4688244 YP_980689.1 CDS Pnap_0446 NC_008781.1 465564 466148 D TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pol:Bpro_4201 histidinol-phosphate phosphatase; histidinol-phosphate phosphatase family protein 465564..466148 Polaromonas naphthalenivorans CJ2 4688245 YP_980690.1 CDS Pnap_0447 NC_008781.1 466315 467082 D PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_4200 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 466315..467082 Polaromonas naphthalenivorans CJ2 4688260 YP_980691.1 CDS Pnap_0448 NC_008781.1 467090 468049 D PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_4199 protein of unknown function DUF45; hypothetical protein 467090..468049 Polaromonas naphthalenivorans CJ2 4687919 YP_980692.1 CDS Pnap_0449 NC_008781.1 468166 468606 D PFAM: response regulator receiver; KEGG: pol:Bpro_4198 response regulator receiver domain protein (CheY-like); response regulator receiver protein 468166..468606 Polaromonas naphthalenivorans CJ2 4688277 YP_980693.1 CDS Pnap_0450 NC_008781.1 468674 472207 D KEGG: pol:Bpro_4197 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 468674..472207 Polaromonas naphthalenivorans CJ2 4688407 YP_980694.1 CDS Pnap_0451 NC_008781.1 472320 472961 D TIGRFAM: DNA binding domain, excisionase family; PFAM: response regulator receiver; KEGG: pol:Bpro_4196 response regulator receiver domain protein (CheY-like); response regulator receiver protein 472320..472961 Polaromonas naphthalenivorans CJ2 4688417 YP_980695.1 CDS Pnap_0452 NC_008781.1 472986 474545 D KEGG: pol:Bpro_4195 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 472986..474545 Polaromonas naphthalenivorans CJ2 4688439 YP_980696.1 CDS Pnap_0453 NC_008781.1 474767 475162 D PFAM: regulatory protein, MerR; KEGG: pol:Bpro_4192 transcriptional regulator, MerR family; MerR family transcriptional regulator 474767..475162 Polaromonas naphthalenivorans CJ2 4689099 YP_980697.1 CDS Pnap_0454 NC_008781.1 475243 475686 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_4191 phenylacetic acid degradation-related protein; hypothetical protein 475243..475686 Polaromonas naphthalenivorans CJ2 4688583 YP_980698.1 CDS Pnap_0455 NC_008781.1 475729 476910 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_4190 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 475729..476910 Polaromonas naphthalenivorans CJ2 4688759 YP_980699.1 CDS Pnap_0456 NC_008781.1 476964 477623 D PFAM: carbonic anhydrase; KEGG: pol:Bpro_4189 carbonate dehydratase; carbonate dehydratase 476964..477623 Polaromonas naphthalenivorans CJ2 4688390 YP_980700.1 CDS aceK NC_008781.1 477701 479572 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 477701..479572 Polaromonas naphthalenivorans CJ2 4688787 YP_980701.1 CDS Pnap_0458 NC_008781.1 479647 480828 D KEGG: pol:Bpro_4187 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 479647..480828 Polaromonas naphthalenivorans CJ2 4688380 YP_980702.1 CDS Pnap_0459 NC_008781.1 480874 482004 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_4185 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 480874..482004 Polaromonas naphthalenivorans CJ2 4688899 YP_980703.1 CDS Pnap_0460 NC_008781.1 482039 482455 D PFAM: Rhodanese domain protein; KEGG: pol:Bpro_4183 rhodanese-like; rhodanese domain-containing protein 482039..482455 Polaromonas naphthalenivorans CJ2 4688951 YP_980704.1 CDS Pnap_0461 NC_008781.1 482671 483831 D KEGG: pol:Bpro_4174 aminotransferase, class V; class V aminotransferase 482671..483831 Polaromonas naphthalenivorans CJ2 4687045 YP_980705.1 CDS Pnap_0462 NC_008781.1 483853 484824 R hypothetical protein complement(483853..484824) Polaromonas naphthalenivorans CJ2 4686065 YP_980706.1 CDS Pnap_0463 NC_008781.1 485047 485313 D KEGG: pol:Bpro_4174 aminotransferase, class V; class V aminotransferase 485047..485313 Polaromonas naphthalenivorans CJ2 4689518 YP_980707.1 CDS Pnap_0464 NC_008781.1 485332 485946 R PFAM: protein of unknown function DUF1326; KEGG: mlo:mll4476 hypothetical protein; hypothetical protein complement(485332..485946) Polaromonas naphthalenivorans CJ2 4687187 YP_980708.1 CDS Pnap_0465 NC_008781.1 486200 486994 D KEGG: pol:Bpro_1844 hypothetical protein; hypothetical protein 486200..486994 Polaromonas naphthalenivorans CJ2 4688014 YP_980709.1 CDS Pnap_0466 NC_008781.1 487094 487504 D KEGG: pol:Bpro_4182 hypothetical protein; hypothetical protein 487094..487504 Polaromonas naphthalenivorans CJ2 4689950 YP_980710.1 CDS Pnap_0467 NC_008781.1 487567 488226 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD-superfamily hydrolase, subfamily IA, variant3; HAD family hydrolase 487567..488226 Polaromonas naphthalenivorans CJ2 4686109 YP_980711.1 CDS Pnap_0468 NC_008781.1 488415 488861 R PFAM: Ion transport 2 domain protein,; KEGG: nha:Nham_1961 ion transport 2; Ion transport 2 domain-containing protein complement(488415..488861) Polaromonas naphthalenivorans CJ2 4688623 YP_980712.1 CDS Pnap_0469 NC_008781.1 488880 489941 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_3834 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein complement(488880..489941) Polaromonas naphthalenivorans CJ2 4687068 YP_980713.1 CDS Pnap_0470 NC_008781.1 490052 491791 D activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein 490052..491791 Polaromonas naphthalenivorans CJ2 4689870 YP_980714.1 CDS Pnap_0471 NC_008781.1 491808 493415 D PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase; propionyl-CoA carboxylase 491808..493415 Polaromonas naphthalenivorans CJ2 4690188 YP_980715.1 CDS Pnap_0472 NC_008781.1 493424 493945 D PFAM: DinB family protein; KEGG: sme:SMc00593 hypothetical protein; DinB family protein 493424..493945 Polaromonas naphthalenivorans CJ2 4689998 YP_980716.1 CDS Pnap_0473 NC_008781.1 493942 494724 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 493942..494724 Polaromonas naphthalenivorans CJ2 4687159 YP_980717.1 CDS Pnap_0474 NC_008781.1 494747 495418 D KEGG: pol:Bpro_4158 putative transmembrane protein; hypothetical protein 494747..495418 Polaromonas naphthalenivorans CJ2 4686268 YP_980718.1 CDS Pnap_0475 NC_008781.1 495411 497423 D PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_4157 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase subunit L 495411..497423 Polaromonas naphthalenivorans CJ2 4687531 YP_980719.1 CDS Pnap_0476 NC_008781.1 497441 498370 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_4156 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 497441..498370 Polaromonas naphthalenivorans CJ2 4689383 YP_980720.1 CDS Pnap_0477 NC_008781.1 498375 499301 D PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4155 pyruvate carboxyltransferase; pyruvate carboxyltransferase 498375..499301 Polaromonas naphthalenivorans CJ2 4686193 YP_980721.1 CDS Pnap_0478 NC_008781.1 499301 500053 D PFAM: YbaK/prolyl-tRNA synthetase associated region; protein of unknown function DUF1289; KEGG: pol:Bpro_4154 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 499301..500053 Polaromonas naphthalenivorans CJ2 4687584 YP_980722.1 CDS Pnap_0479 NC_008781.1 500050 500739 D PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_4153 DsbA oxidoreductase; DSBA oxidoreductase 500050..500739 Polaromonas naphthalenivorans CJ2 4688115 YP_980723.1 CDS Pnap_0480 NC_008781.1 500800 502626 D PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: cvi:CV2945 CBS domain-containing protein; cyclic nucleotide-binding protein 500800..502626 Polaromonas naphthalenivorans CJ2 4688903 YP_980724.1 CDS Pnap_0481 NC_008781.1 502623 503285 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 502623..503285 Polaromonas naphthalenivorans CJ2 4687574 YP_980725.1 CDS Pnap_0482 NC_008781.1 503441 503794 D PFAM: transport-associated; transporter 503441..503794 Polaromonas naphthalenivorans CJ2 4689185 YP_980726.1 CDS Pnap_0484 NC_008781.1 505881 506234 R PFAM: protein of unknown function DUF485; KEGG: xoo:XOO4547 hypothetical protein; hypothetical protein complement(505881..506234) Polaromonas naphthalenivorans CJ2 4689367 YP_980727.1 CDS Pnap_0485 NC_008781.1 506556 508214 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pol:Bpro_4142 general substrate transporter; major facilitator superfamily transporter 506556..508214 Polaromonas naphthalenivorans CJ2 4689062 YP_980728.1 CDS Pnap_0486 NC_008781.1 508230 508733 D KEGG: pol:Bpro_4141 hypothetical protein; hypothetical protein 508230..508733 Polaromonas naphthalenivorans CJ2 4689253 YP_980729.1 CDS Pnap_0487 NC_008781.1 508744 509847 R PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(508744..509847) Polaromonas naphthalenivorans CJ2 4687769 YP_980730.1 CDS Pnap_0488 NC_008781.1 510042 515939 D KEGG: pol:Bpro_4139 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; excinuclease ABC subunit A 510042..515939 Polaromonas naphthalenivorans CJ2 4687721 YP_980731.1 CDS Pnap_0489 NC_008781.1 516348 517784 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 516348..517784 Polaromonas naphthalenivorans CJ2 4688680 YP_980732.1 CDS Pnap_0490 NC_008781.1 517927 519003 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_4131 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 517927..519003 Polaromonas naphthalenivorans CJ2 4686884 YP_980733.1 CDS Pnap_0491 NC_008781.1 519013 519843 D TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: pol:Bpro_4130 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 519013..519843 Polaromonas naphthalenivorans CJ2 4689819 YP_980734.1 CDS Pnap_0492 NC_008781.1 519843 520559 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pol:Bpro_4129 rare lipoprotein A; rare lipoprotein A 519843..520559 Polaromonas naphthalenivorans CJ2 4688498 YP_980735.1 CDS Pnap_0493 NC_008781.1 520730 521353 D KEGG: pol:Bpro_4118 hypothetical protein; hypothetical protein 520730..521353 Polaromonas naphthalenivorans CJ2 4686834 YP_980736.1 CDS Pnap_0494 NC_008781.1 521356 522768 D PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: pol:Bpro_4117 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 521356..522768 Polaromonas naphthalenivorans CJ2 4689098 YP_980737.1 CDS Pnap_0495 NC_008781.1 522761 523792 D PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: pol:Bpro_4116 cytochrome bd ubiquinol oxidase, subunit II; cytochrome bd ubiquinol oxidase subunit II 522761..523792 Polaromonas naphthalenivorans CJ2 4688597 YP_980738.1 CDS Pnap_0496 NC_008781.1 523803 524825 R PFAM: protein of unknown function DUF519; KEGG: pol:Bpro_4114 protein of unknown function DUF519; hypothetical protein complement(523803..524825) Polaromonas naphthalenivorans CJ2 4689347 YP_980739.1 CDS Pnap_0497 NC_008781.1 524874 526469 R PFAM: magnesium chelatase, ChlI subunit; sigma-54 factor, interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1470 regulator of RNA terminal phosphate cyclase; regulator of RNA terminal phosphate cyclase complement(524874..526469) Polaromonas naphthalenivorans CJ2 4687900 YP_980740.1 CDS Pnap_0498 NC_008781.1 526614 527906 D PFAM: protein of unknown function UPF0027; KEGG: pol:Bpro_1473 protein of unknown function UPF0027; hypothetical protein 526614..527906 Polaromonas naphthalenivorans CJ2 4689392 YP_980741.1 CDS Pnap_0499 NC_008781.1 527926 529023 D PFAM: RNA 3'-terminal phosphate cyclase; KEGG: pol:Bpro_1474 RNA-3'-phosphate cyclase; RNA-3'-phosphate cyclase 527926..529023 Polaromonas naphthalenivorans CJ2 4689455 YP_980742.1 CDS rplM NC_008781.1 529265 529708 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 529265..529708 Polaromonas naphthalenivorans CJ2 4689741 YP_980743.1 CDS rpsI NC_008781.1 529705 530097 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 529705..530097 Polaromonas naphthalenivorans CJ2 4689076 YP_980744.1 CDS Pnap_0502 NC_008781.1 530261 530626 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 530261..530626 Polaromonas naphthalenivorans CJ2 4687534 YP_980745.1 CDS Pnap_0503 NC_008781.1 530809 533061 D SMART: helicase c2; KEGG: rfr:Rfer_2033 helicase C2; helicase c2 530809..533061 Polaromonas naphthalenivorans CJ2 4686406 YP_980746.1 CDS anmK NC_008781.1 533105 534244 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(533105..534244) Polaromonas naphthalenivorans CJ2 4686115 YP_980747.1 CDS Pnap_0505 NC_008781.1 534281 535678 R PFAM: peptidase M23B; KEGG: pol:Bpro_4107 peptidase M23B; peptidase M23B complement(534281..535678) Polaromonas naphthalenivorans CJ2 4686310 YP_980748.1 CDS Pnap_0506 NC_008781.1 535905 537137 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 535905..537137 Polaromonas naphthalenivorans CJ2 4687001 YP_980749.1 CDS Pnap_0507 NC_008781.1 537151 537615 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 537151..537615 Polaromonas naphthalenivorans CJ2 4686334 YP_980750.1 CDS Pnap_0508 NC_008781.1 537696 538151 R PFAM: protein of unknown function UPF0054; KEGG: rfr:Rfer_0737 protein of unknown function UPF0054; hypothetical protein complement(537696..538151) Polaromonas naphthalenivorans CJ2 4687006 YP_980751.1 CDS Pnap_0509 NC_008781.1 538141 539178 R PFAM: PhoH family protein; KEGG: pol:Bpro_4095 PhoH-like protein; PhoH family protein complement(538141..539178) Polaromonas naphthalenivorans CJ2 4687605 YP_980752.1 CDS ruvA NC_008781.1 539239 539817 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 539239..539817 Polaromonas naphthalenivorans CJ2 4687918 YP_980753.1 CDS Pnap_0511 NC_008781.1 539830 540756 D PFAM: protein of unknown function DUF511; KEGG: cte:CT1399 hypothetical protein; hypothetical protein 539830..540756 Polaromonas naphthalenivorans CJ2 4687662 YP_980754.1 CDS ruvB NC_008781.1 540753 541823 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 540753..541823 Polaromonas naphthalenivorans CJ2 4688470 YP_980755.1 CDS Pnap_0513 NC_008781.1 542006 543196 R KEGG: pol:Bpro_4092 putative threonine aldolase; putative threonine aldolase complement(542006..543196) Polaromonas naphthalenivorans CJ2 4688509 YP_980756.1 CDS Pnap_0514 NC_008781.1 543224 543898 R PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_4091 phosphoglycerate mutase; phosphoglycerate mutase complement(543224..543898) Polaromonas naphthalenivorans CJ2 4688957 YP_980757.1 CDS Pnap_0515 NC_008781.1 543948 544574 R KEGG: pol:Bpro_4090 hypothetical protein; hypothetical protein complement(543948..544574) Polaromonas naphthalenivorans CJ2 4689958 YP_980758.1 CDS Pnap_0516 NC_008781.1 544596 545540 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(544596..545540) Polaromonas naphthalenivorans CJ2 4689812 YP_980759.1 CDS Pnap_0517 NC_008781.1 545546 545998 R KEGG: pol:Bpro_4088 dihydroneopterin aldolase; dihydroneopterin aldolase complement(545546..545998) Polaromonas naphthalenivorans CJ2 4689423 YP_980760.1 CDS Pnap_0518 NC_008781.1 545995 546762 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_4087 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(545995..546762) Polaromonas naphthalenivorans CJ2 4689484 YP_980761.1 CDS Pnap_0519 NC_008781.1 546835 547941 D PFAM: protein of unknown function DUF185; KEGG: pol:Bpro_4086 protein of unknown function DUF185; hypothetical protein 546835..547941 Polaromonas naphthalenivorans CJ2 4688654 YP_980762.1 CDS Pnap_0520 NC_008781.1 548057 548335 D KEGG: pol:Bpro_0616 transcriptional regulator, XRE family; hypothetical protein 548057..548335 Polaromonas naphthalenivorans CJ2 4687802 YP_980763.1 CDS Pnap_0521 NC_008781.1 548332 549600 D PFAM: HipA domain protein; KEGG: pol:Bpro_0617 HipA-like; HipA domain-containing protein 548332..549600 Polaromonas naphthalenivorans CJ2 4688021 YP_980764.1 CDS Pnap_0522 NC_008781.1 549611 549805 D KEGG: pol:Bpro_4085 hypothetical protein; hypothetical protein 549611..549805 Polaromonas naphthalenivorans CJ2 4688709 YP_980765.1 CDS Pnap_0523 NC_008781.1 549995 551251 D PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_1097 extracellular solute-binding protein, family 1; extracellular solute-binding protein 549995..551251 Polaromonas naphthalenivorans CJ2 4689096 YP_980766.1 CDS Pnap_0524 NC_008781.1 551295 552680 R KEGG: pol:Bpro_3918 alpha,alpha-trehalose-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase, family 20; alpha,alpha-trehalose-phosphate synthase complement(551295..552680) Polaromonas naphthalenivorans CJ2 4690126 YP_980767.1 CDS Pnap_0525 NC_008781.1 552677 554497 R PFAM: glycoside hydrolase 15-related; KEGG: pol:Bpro_3916 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein complement(552677..554497) Polaromonas naphthalenivorans CJ2 4689685 YP_980768.1 CDS Pnap_0526 NC_008781.1 554494 555273 R KEGG: pol:Bpro_3915 HAD-superfamily hydrolase subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD family hydrolase complement(554494..555273) Polaromonas naphthalenivorans CJ2 4687743 YP_980769.1 CDS Pnap_0527 NC_008781.1 555398 557479 R PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0652 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit complement(555398..557479) Polaromonas naphthalenivorans CJ2 4687508 YP_980770.1 CDS Pnap_0528 NC_008781.1 557489 558127 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: pol:Bpro_0653 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 557489..558127 Polaromonas naphthalenivorans CJ2 4686745 YP_980771.1 CDS Pnap_0529 NC_008781.1 558214 559257 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1086 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(558214..559257) Polaromonas naphthalenivorans CJ2 4687480 YP_980772.1 CDS Pnap_0530 NC_008781.1 559331 559792 D KEGG: rfr:Rfer_1085 hypothetical protein; hypothetical protein 559331..559792 Polaromonas naphthalenivorans CJ2 4687059 YP_980773.1 CDS Pnap_0531 NC_008781.1 559817 560221 R PFAM: BLUF domain protein; KEGG: pol:Bpro_0667 sensors of blue-light using FAD; BLUF domain-containing protein complement(559817..560221) Polaromonas naphthalenivorans CJ2 4687852 YP_980774.1 CDS Pnap_0532 NC_008781.1 560234 561064 D PFAM: cyclic nucleotide-binding; KEGG: mfa:Mfla_1734 transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein 560234..561064 Polaromonas naphthalenivorans CJ2 4686145 YP_980775.1 CDS Pnap_0533 NC_008781.1 561187 562608 D KEGG: pol:Bpro_0671 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase 561187..562608 Polaromonas naphthalenivorans CJ2 4689522 YP_980776.1 CDS Pnap_0535 NC_008781.1 563289 563771 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_0674 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(563289..563771) Polaromonas naphthalenivorans CJ2 4689345 YP_980777.1 CDS Pnap_0536 NC_008781.1 563910 565766 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 563910..565766 Polaromonas naphthalenivorans CJ2 4689262 YP_980778.1 CDS Pnap_0537 NC_008781.1 565874 566455 R PFAM: transposase, IS4 family protein; KEGG: sal:Sala_0677 transposase, IS4; transposase, IS4 family protein complement(565874..566455) Polaromonas naphthalenivorans CJ2 4686372 YP_980779.1 CDS Pnap_0538 NC_008781.1 566895 567371 D PFAM: Rhodanese domain protein; KEGG: bxe:Bxe_B1556 hypothetical protein; rhodanese domain-containing protein 566895..567371 Polaromonas naphthalenivorans CJ2 4687739 YP_980780.1 CDS Pnap_0539 NC_008781.1 567423 568349 D KEGG: bxe:Bxe_B1555 serine O-acetyltransferase; Serine O-acetyltransferase 567423..568349 Polaromonas naphthalenivorans CJ2 4688477 YP_980781.1 CDS Pnap_0540 NC_008781.1 568346 568618 D PFAM: helix-turn-helix domain protein; KEGG: bpm:BURPS1710b_A0364 possible transcriptional regulator, XRE family, cupin domain; helix-turn-helix domain-containing protein 568346..568618 Polaromonas naphthalenivorans CJ2 4689908 YP_980782.1 CDS Pnap_0541 NC_008781.1 568766 570121 R KEGG: bja:blr1916 putative transposase; putative transposase complement(568766..570121) Polaromonas naphthalenivorans CJ2 4687710 YP_980783.1 CDS Pnap_0542 NC_008781.1 570177 571058 D KEGG: bxe:Bxe_B1553 hypothetical protein; hypothetical protein 570177..571058 Polaromonas naphthalenivorans CJ2 4686154 YP_980784.1 CDS Pnap_0543 NC_008781.1 571073 573112 D TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_C0124 cysteine desulphurases, SufS; SufS subfamily cysteine desulfurase 571073..573112 Polaromonas naphthalenivorans CJ2 4689205 YP_980785.1 CDS Pnap_0544 NC_008781.1 573413 574417 D TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: pae:PA3449 putative sulfonate transport system substrate-binding protein; aliphatic sulfonates ABC transporter substrate-binding protein 573413..574417 Polaromonas naphthalenivorans CJ2 4688781 YP_980786.1 CDS Pnap_0545 NC_008781.1 574425 575354 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcn:Bcen_6520 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 574425..575354 Polaromonas naphthalenivorans CJ2 4686158 YP_980787.1 CDS Pnap_0546 NC_008781.1 575351 576088 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcn:Bcen_6521 ABC transporter related; ABC transporter-like protein 575351..576088 Polaromonas naphthalenivorans CJ2 4689040 YP_980788.1 CDS Pnap_0547 NC_008781.1 576594 577703 D PFAM: luciferase family protein; KEGG: bacterial luciferase family protein; luciferase family protein 576594..577703 Polaromonas naphthalenivorans CJ2 4687829 YP_980789.1 CDS Pnap_0548 NC_008781.1 577720 578931 D KEGG: long-chain-fatty-acid--CoA ligase-related protein; long-chain-fatty-acid--CoA ligase-like protein 577720..578931 Polaromonas naphthalenivorans CJ2 4687818 YP_980790.1 CDS Pnap_0549 NC_008781.1 578946 579743 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: branched-chain amino acid ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 578946..579743 Polaromonas naphthalenivorans CJ2 4687803 YP_980791.1 CDS Pnap_0550 NC_008781.1 579765 580646 D PFAM: inner-membrane translocator; KEGG: psp:PSPPH_2369 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 579765..580646 Polaromonas naphthalenivorans CJ2 4687789 YP_980792.1 CDS Pnap_0551 NC_008781.1 580659 581726 D PFAM: inner-membrane translocator; KEGG: branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 580659..581726 Polaromonas naphthalenivorans CJ2 4688090 YP_980793.1 CDS Pnap_0552 NC_008781.1 581780 583105 D KEGG: ppu:PP_2770 hypothetical protein; hypothetical protein 581780..583105 Polaromonas naphthalenivorans CJ2 4687482 YP_980794.1 CDS Pnap_0553 NC_008781.1 583193 584434 D PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: psp:PSPPH_2366 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase type 2 583193..584434 Polaromonas naphthalenivorans CJ2 4687374 YP_980795.1 CDS Pnap_0554 NC_008781.1 584498 585751 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: atc:AGR_pAT_773 hypothetical protein; acyl-CoA dehydrogenase type 2 584498..585751 Polaromonas naphthalenivorans CJ2 4687354 YP_980796.1 CDS Pnap_0555 NC_008781.1 586010 586771 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 586010..586771 Polaromonas naphthalenivorans CJ2 4687277 YP_980797.1 CDS Pnap_0556 NC_008781.1 586812 587915 R PFAM: sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_3918 sigma-54 specific transcriptional regulator, fis family; response regulator receiver protein complement(586812..587915) Polaromonas naphthalenivorans CJ2 4686635 YP_980798.1 CDS Pnap_0557 NC_008781.1 587932 589119 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pfo:Pfl_3917 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase type 2 complement(587932..589119) Polaromonas naphthalenivorans CJ2 4686216 YP_980799.1 CDS Pnap_0558 NC_008781.1 589201 589761 R PFAM: NADPH-dependent FMN reductase; KEGG: pfo:Pfl_3915 FMN reductase; FMN reductase complement(589201..589761) Polaromonas naphthalenivorans CJ2 4686568 YP_980800.1 CDS Pnap_0559 NC_008781.1 589793 590053 D hypothetical protein 589793..590053 Polaromonas naphthalenivorans CJ2 4686142 YP_980801.1 CDS Pnap_0560 NC_008781.1 590500 591714 D PFAM: luciferase family protein; KEGG: bxe:Bxe_B1542 alkanesulfonate monooxygenase; alkanesulfonate monooxygenase 590500..591714 Polaromonas naphthalenivorans CJ2 4686116 YP_980802.1 CDS Pnap_0561 NC_008781.1 591711 592562 D PFAM: amidohydrolase 2; KEGG: bbr:BB1077 hypothetical protein; amidohydrolase 2 591711..592562 Polaromonas naphthalenivorans CJ2 4686091 YP_980803.1 CDS Pnap_0562 NC_008781.1 592589 593578 D TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: eba:ebA4678 cysteine synthase A; cysteine synthase A 592589..593578 Polaromonas naphthalenivorans CJ2 4686064 YP_980804.1 CDS Pnap_0563 NC_008781.1 593702 594727 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2345 thiosulphate-binding protein; sulfate ABC transporter substrate-binding protein 593702..594727 Polaromonas naphthalenivorans CJ2 4690220 YP_980805.1 CDS Pnap_0564 NC_008781.1 594770 595945 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_3918 sigma-54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 594770..595945 Polaromonas naphthalenivorans CJ2 4689678 YP_980806.1 CDS Pnap_0565 NC_008781.1 596039 598219 D KEGG: ccr:CC0217 ThiO:disulfide interchange protein, putative; thiol:disulfide interchange protein 596039..598219 Polaromonas naphthalenivorans CJ2 4686802 YP_980807.1 CDS Pnap_0566 NC_008781.1 598299 599864 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS02156 putative outer membrane drug efflux lipoprotein; RND efflux system outer membrane lipoprotein complement(598299..599864) Polaromonas naphthalenivorans CJ2 4688997 YP_980808.1 CDS Pnap_0567 NC_008781.1 599861 601135 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS02155 putative transport transmembrane protein; RND family efflux transporter MFP subunit complement(599861..601135) Polaromonas naphthalenivorans CJ2 4687891 YP_980809.1 CDS Pnap_0568 NC_008781.1 601160 604357 R PFAM: acriflavin resistance protein; KEGG: rso:RS02154 probable transport transmembrane protein; acriflavin resistance protein complement(601160..604357) Polaromonas naphthalenivorans CJ2 4686556 YP_980810.1 CDS Pnap_0569 NC_008781.1 604587 605063 R PFAM: cytochrome c, class II; KEGG: mag:amb0751 cytochrome c' precursor; class II cytochrome c complement(604587..605063) Polaromonas naphthalenivorans CJ2 4687780 YP_980811.1 CDS Pnap_0570 NC_008781.1 605150 606154 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rba:RB1022 gluconolactonase; SMP-30/gluconolaconase/LRE domain-containing protein complement(605150..606154) Polaromonas naphthalenivorans CJ2 4689206 YP_980812.1 CDS Pnap_0571 NC_008781.1 606183 606791 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bte:BTH_II0300 bcp; redoxin domain-containing protein complement(606183..606791) Polaromonas naphthalenivorans CJ2 4687365 YP_980813.1 CDS Pnap_0572 NC_008781.1 606823 607506 R PFAM: cytochrome c, class I; KEGG: sdn:Sden_3622 cytochrome c, class I; class I cytochrome c complement(606823..607506) Polaromonas naphthalenivorans CJ2 4687733 YP_980814.1 CDS Pnap_0573 NC_008781.1 607522 607935 R hypothetical protein complement(607522..607935) Polaromonas naphthalenivorans CJ2 4686202 YP_980815.1 CDS Pnap_0574 NC_008781.1 607966 609417 R PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_1146 protein of unknown function DUF1501; hypothetical protein complement(607966..609417) Polaromonas naphthalenivorans CJ2 4689881 YP_980816.1 CDS Pnap_0575 NC_008781.1 609455 611803 R PFAM: protein of unknown function DUF1549; KEGG: rba:RB2845 hypothetical protein-transmembrane prediction; hypothetical protein complement(609455..611803) Polaromonas naphthalenivorans CJ2 4686266 YP_980817.1 CDS Pnap_0576 NC_008781.1 612254 613768 D hypothetical protein 612254..613768 Polaromonas naphthalenivorans CJ2 4686368 YP_980818.1 CDS Pnap_0577 NC_008781.1 613798 614886 D KEGG: bcn:Bcen_4344 ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein 613798..614886 Polaromonas naphthalenivorans CJ2 4686390 YP_980819.1 CDS Pnap_0578 NC_008781.1 614962 615825 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_B2062 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit; binding-protein-dependent transport system inner membrane protein 614962..615825 Polaromonas naphthalenivorans CJ2 4686394 YP_980820.1 CDS Pnap_0579 NC_008781.1 615843 616661 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C0132 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit; binding-protein-dependent transport system inner membrane protein 615843..616661 Polaromonas naphthalenivorans CJ2 4686446 YP_980821.1 CDS Pnap_0580 NC_008781.1 616721 617518 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A2157 putative ABC sulfate ester transporter, ATPase subunit; ABC transporter-like protein 616721..617518 Polaromonas naphthalenivorans CJ2 4686478 YP_980822.1 CDS Pnap_0581 NC_008781.1 617587 618333 D KEGG: bja:bll5801 hypothetical protein; hypothetical protein 617587..618333 Polaromonas naphthalenivorans CJ2 4686486 YP_980823.1 CDS Pnap_0582 NC_008781.1 618504 619172 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: eba:ebA3526 putative cyctochrome C biogenesis protein; hypothetical protein complement(618504..619172) Polaromonas naphthalenivorans CJ2 4686642 YP_980824.1 CDS Pnap_0583 NC_008781.1 619169 619570 R PFAM: cytochrome C biogenesis protein; KEGG: reu:Reut_B4772 cytochrome c biogenesis protein; cytochrome C biogenesis protein complement(619169..619570) Polaromonas naphthalenivorans CJ2 4686646 YP_980825.1 CDS Pnap_0584 NC_008781.1 619563 620090 R TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: dar:Daro_3997 periplasmic protein thiol:disulfide oxidoreductase DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE complement(619563..620090) Polaromonas naphthalenivorans CJ2 4687369 YP_980826.1 CDS Pnap_0585 NC_008781.1 620099 622096 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: neu:NE0768 cytochrome c-type biogenesis protein (CcmF); cytochrome c-type biogenesis protein CcmF complement(620099..622096) Polaromonas naphthalenivorans CJ2 4687180 YP_980827.1 CDS Pnap_0586 NC_008781.1 622093 622542 R PFAM: CcmE/CycJ protein; KEGG: net:Neut_0060 CcmE/CycJ protein; CcmE/CycJ protein complement(622093..622542) Polaromonas naphthalenivorans CJ2 4687240 YP_980828.1 CDS Pnap_0587 NC_008781.1 622718 623506 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: nmu:Nmul_A1212 heme exporter protein CcmC; heme exporter protein CcmC complement(622718..623506) Polaromonas naphthalenivorans CJ2 4688064 YP_980829.1 CDS Pnap_0588 NC_008781.1 623530 624198 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: nmu:Nmul_A1216 heme exporter protein CcmB; heme exporter protein CcmB complement(623530..624198) Polaromonas naphthalenivorans CJ2 4688756 YP_980830.1 CDS Pnap_0589 NC_008781.1 624192 624836 R KEGG: neu:NE0764 ABC superfamily (atp_bind), heme exporter protein, cytochrome c-type biogenesis protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; heme exporter protein CcmA complement(624192..624836) Polaromonas naphthalenivorans CJ2 4688592 YP_980831.1 CDS Pnap_0590 NC_008781.1 624830 625630 R PFAM: cytochrome B561; KEGG: dar:Daro_3282 cytochrome b561, bacterial; cytochrome B561 complement(624830..625630) Polaromonas naphthalenivorans CJ2 4686597 YP_980832.1 CDS Pnap_0591 NC_008781.1 625646 626110 R KEGG: ttj:TTHA0836 rhodanese-like domain protein; hypothetical protein complement(625646..626110) Polaromonas naphthalenivorans CJ2 4688843 YP_980833.1 CDS Pnap_0593 NC_008781.1 626748 627113 R PFAM: transposase, IS4 family protein; KEGG: ccr:CC2592 ISCc1, transposase OrfB; transposase, IS4 family protein complement(626748..627113) Polaromonas naphthalenivorans CJ2 4688884 YP_980834.1 CDS Pnap_0594 NC_008781.1 627285 628640 R KEGG: bja:blr1916 putative transposase; putative transposase complement(627285..628640) Polaromonas naphthalenivorans CJ2 4686723 YP_980835.1 CDS Pnap_0595 NC_008781.1 628997 629239 D PFAM: phage Tail Collar domain protein; KEGG: mlo:mll4441 microcystin dependent protein MdpB; phage tail collar domain-containing protein 628997..629239 Polaromonas naphthalenivorans CJ2 4686774 YP_980836.1 CDS Pnap_0596 NC_008781.1 629270 629572 R hypothetical protein complement(629270..629572) Polaromonas naphthalenivorans CJ2 4690090 YP_980837.1 CDS Pnap_0597 NC_008781.1 629705 630034 D KEGG: plu:plu4334 hypothetical protein; hypothetical protein 629705..630034 Polaromonas naphthalenivorans CJ2 4686786 YP_980838.1 CDS Pnap_0598 NC_008781.1 630162 631676 D PFAM: FAD linked oxidase domain protein; KEGG: sco:SCO5857 FAD-dependent oxidoreductase; FAD linked oxidase domain-containing protein 630162..631676 Polaromonas naphthalenivorans CJ2 4690163 YP_980839.1 CDS Pnap_0599 NC_008781.1 631708 632685 R PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB0660 hypothetical protein; hypothetical protein complement(631708..632685) Polaromonas naphthalenivorans CJ2 4689482 YP_980840.1 CDS Pnap_0600 NC_008781.1 632717 633355 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: rso:RS03175 putative transferase protein; dimethylmenaquinone methyltransferase complement(632717..633355) Polaromonas naphthalenivorans CJ2 4686957 YP_980841.1 CDS Pnap_0601 NC_008781.1 633394 634260 R PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: nar:Saro_2815 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase complement(633394..634260) Polaromonas naphthalenivorans CJ2 4687175 YP_980842.1 CDS Pnap_0602 NC_008781.1 634463 635125 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: nar:Saro_0179 transcriptional regulator, GntR family; GntR family transcriptional regulator 634463..635125 Polaromonas naphthalenivorans CJ2 4688365 YP_980843.1 CDS Pnap_0603 NC_008781.1 635157 635624 R PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3119 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(635157..635624) Polaromonas naphthalenivorans CJ2 4688304 YP_980844.1 CDS Pnap_0604 NC_008781.1 635771 636760 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3116 twin-arginine translocation pathway signal; hypothetical protein complement(635771..636760) Polaromonas naphthalenivorans CJ2 4687396 YP_980845.1 CDS Pnap_0605 NC_008781.1 637033 637815 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(637033..637815) Polaromonas naphthalenivorans CJ2 4687522 YP_980846.1 CDS Pnap_0606 NC_008781.1 637966 638841 D PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0275 amidohydrolase 2; amidohydrolase 2 637966..638841 Polaromonas naphthalenivorans CJ2 4690084 YP_980847.1 CDS Pnap_0607 NC_008781.1 638908 639954 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bja:bll6212 transcriptional regulatory protein; helix-turn-helix domain-containing protein complement(638908..639954) Polaromonas naphthalenivorans CJ2 4687428 YP_980848.1 CDS Pnap_0608 NC_008781.1 640253 641245 D KEGG: xac:XAC0352 hypothetical protein; hypothetical protein 640253..641245 Polaromonas naphthalenivorans CJ2 4687213 YP_980849.1 CDS Pnap_0609 NC_008781.1 641306 642568 D PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_5958 major facilitator family transporter, putative; major facilitator superfamily transporter 641306..642568 Polaromonas naphthalenivorans CJ2 4686764 YP_980850.1 CDS Pnap_0610 NC_008781.1 642669 644111 D PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 642669..644111 Polaromonas naphthalenivorans CJ2 4690028 YP_980851.1 CDS Pnap_0611 NC_008781.1 644191 645636 D PFAM: Carotenoid oxygenase; KEGG: ana:all1106 similar to neoxanthin cleavage enzyme; carotenoid oxygenase 644191..645636 Polaromonas naphthalenivorans CJ2 4690039 YP_980852.1 CDS Pnap_0612 NC_008781.1 645800 647002 R KEGG: bmb:BruAb2_1109 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, hypothetical; branched chain amino-acid ABC transporter substrate-binding protein complement(645800..647002) Polaromonas naphthalenivorans CJ2 4686285 YP_980853.1 CDS Pnap_0613 NC_008781.1 647219 648454 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB complement(647219..648454) Polaromonas naphthalenivorans CJ2 4686070 YP_980854.1 CDS Pnap_0614 NC_008781.1 648849 649673 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5807 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 648849..649673 Polaromonas naphthalenivorans CJ2 4686338 YP_980855.1 CDS Pnap_0615 NC_008781.1 649701 650486 D PFAM: regulatory proteins, IclR; Helix-turn-helix, type 11 domain protein; KEGG: reu:Reut_B5810 regulatory protein, IclR; helix-turn-helix, type 11 domain-containing protein 649701..650486 Polaromonas naphthalenivorans CJ2 4686381 YP_980856.1 CDS mhpA NC_008781.1 650483 652225 D catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate; 3-(3-hydroxyphenyl)propionate hydroxylase 650483..652225 Polaromonas naphthalenivorans CJ2 4686322 YP_980857.1 CDS Pnap_0617 NC_008781.1 652245 653270 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065; hypothetical protein 652245..653270 Polaromonas naphthalenivorans CJ2 4686080 YP_980858.1 CDS Pnap_0618 NC_008781.1 653369 654217 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr5285 hypothetical protein; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 653369..654217 Polaromonas naphthalenivorans CJ2 4686094 YP_980859.1 CDS Pnap_0619 NC_008781.1 654289 656124 R KEGG: rpc:RPC_2961 putative flavoprotein involved in K+ transport; putative potassium transport flavoprotein complement(654289..656124) Polaromonas naphthalenivorans CJ2 4686122 YP_980860.1 CDS Pnap_0620 NC_008781.1 656373 658334 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: reu:Reut_B5548 helix-turn-helix, fis-type; Fis family GAF modulated sigma54 specific transcriptional regulator complement(656373..658334) Polaromonas naphthalenivorans CJ2 4686453 YP_980861.1 CDS Pnap_0621 NC_008781.1 658482 658904 R PFAM: helix-turn-helix, HxlR type; KEGG: stm:STM4402 putative transcriptional regulator; HxlR family transcriptional regulator complement(658482..658904) Polaromonas naphthalenivorans CJ2 4686452 YP_980862.1 CDS Pnap_0622 NC_008781.1 658994 659848 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: yps:YPTB2423 hypothetical protein; NmrA family protein 658994..659848 Polaromonas naphthalenivorans CJ2 4686475 YP_980863.1 CDS Pnap_0623 NC_008781.1 660162 660608 D KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease; DNA/RNA endonuclease G NUC1-like protein 660162..660608 Polaromonas naphthalenivorans CJ2 4686433 YP_980864.1 CDS Pnap_0624 NC_008781.1 660757 661482 D PFAM: Endonuclease I; KEGG: cvi:CV1988 deoxyribonuclease I; deoxyribonuclease I 660757..661482 Polaromonas naphthalenivorans CJ2 4688182 YP_980865.1 CDS Pnap_0625 NC_008781.1 661587 662594 R hypothetical protein complement(661587..662594) Polaromonas naphthalenivorans CJ2 4686124 YP_980866.1 CDS Pnap_0626 NC_008781.1 662650 663111 R hypothetical protein complement(662650..663111) Polaromonas naphthalenivorans CJ2 4686407 YP_980867.1 CDS Pnap_0627 NC_008781.1 663151 663846 R KEGG: bxe:Bxe_B0034 hypothetical protein; hypothetical protein complement(663151..663846) Polaromonas naphthalenivorans CJ2 4686502 YP_980868.1 CDS Pnap_0628 NC_008781.1 663843 667040 R PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0035 putative phage integrase; phage integrase family protein complement(663843..667040) Polaromonas naphthalenivorans CJ2 4686494 YP_980869.1 CDS Pnap_0629 NC_008781.1 667037 668359 R PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0036 hypothetical protein; phage integrase family protein complement(667037..668359) Polaromonas naphthalenivorans CJ2 4686131 YP_980870.1 CDS Pnap_0630 NC_008781.1 668680 669192 D PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 668680..669192 Polaromonas naphthalenivorans CJ2 4686159 YP_980871.1 CDS Pnap_0631 NC_008781.1 669209 669457 D KEGG: aci:ACIAD3407 hypothetical protein; hypothetical protein 669209..669457 Polaromonas naphthalenivorans CJ2 4686174 YP_980872.1 CDS Pnap_0632 NC_008781.1 669441 670280 R KEGG: dar:Daro_3554 hypothetical protein; hypothetical protein complement(669441..670280) Polaromonas naphthalenivorans CJ2 4686534 YP_980873.1 CDS Pnap_0633 NC_008781.1 670342 672060 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: reu:Reut_B4742 TrkA-N:sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(670342..672060) Polaromonas naphthalenivorans CJ2 4686594 YP_980874.1 CDS Pnap_0634 NC_008781.1 672039 673535 R KEGG: pol:Bpro_1195 hypothetical protein; hypothetical protein complement(672039..673535) Polaromonas naphthalenivorans CJ2 4686128 YP_980875.1 CDS Pnap_0635 NC_008781.1 673732 673983 D PFAM: Transglycosylase-associated protein; KEGG: bba:Bd1857 putative transglycosylase-associated protein; transglycosylase-associated protein 673732..673983 Polaromonas naphthalenivorans CJ2 4686608 YP_980876.1 CDS Pnap_0636 NC_008781.1 674080 674805 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: pol:Bpro_0734 ExsB; exsB protein 674080..674805 Polaromonas naphthalenivorans CJ2 4687312 YP_980877.1 CDS Pnap_0637 NC_008781.1 674809 676419 R PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0736 protein of unknown function DUF894, DitE; hypothetical protein complement(674809..676419) Polaromonas naphthalenivorans CJ2 4687185 YP_980878.1 CDS Pnap_0638 NC_008781.1 676432 678264 R PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0737 ABC transporter-like; ABC transporter complement(676432..678264) Polaromonas naphthalenivorans CJ2 4687388 YP_980879.1 CDS Pnap_0639 NC_008781.1 678287 679267 R PFAM: 5-nucleotidase; KEGG: pol:Bpro_0738 5-nucleotidase; 5'-nucleotidase complement(678287..679267) Polaromonas naphthalenivorans CJ2 4687204 YP_980880.1 CDS Pnap_0640 NC_008781.1 679304 679858 R PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_0739 phosphoglycerate mutase; phosphoglycerate mutase complement(679304..679858) Polaromonas naphthalenivorans CJ2 4687450 YP_980881.1 CDS Pnap_0641 NC_008781.1 679863 680699 R PFAM: cobalamin-5-phosphate synthase CobS; KEGG: pol:Bpro_0740 cobalamin 5'-phosphate synthase; cobalamin-5-phosphate synthase CobS complement(679863..680699) Polaromonas naphthalenivorans CJ2 4687411 YP_980882.1 CDS Pnap_0642 NC_008781.1 680708 681760 R PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: pol:Bpro_0741 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(680708..681760) Polaromonas naphthalenivorans CJ2 4687477 YP_980883.1 CDS Pnap_0643 NC_008781.1 681723 681968 R KEGG: pol:Bpro_0742 hypothetical protein; hypothetical protein complement(681723..681968) Polaromonas naphthalenivorans CJ2 4687940 YP_980884.1 CDS Pnap_0644 NC_008781.1 681977 683626 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(681977..683626) Polaromonas naphthalenivorans CJ2 4688043 YP_980885.1 CDS Pnap_0645 NC_008781.1 683953 684411 D PFAM: OsmC family protein; KEGG: pol:Bpro_0744 OsmC-like protein; OsmC family protein 683953..684411 Polaromonas naphthalenivorans CJ2 4687729 YP_980886.1 CDS Pnap_0646 NC_008781.1 684425 685054 R KEGG: pol:Bpro_0745 putative ubiquinone biosynthesis protein; putative ubiquinone biosynthesis protein complement(684425..685054) Polaromonas naphthalenivorans CJ2 4687725 YP_980887.1 CDS Pnap_0647 NC_008781.1 685250 686545 R KEGG: pol:Bpro_0746 outer membrane protein (porin)-like; outer membrane protein (porin)-like protein complement(685250..686545) Polaromonas naphthalenivorans CJ2 4687163 YP_980888.1 CDS Pnap_0648 NC_008781.1 686561 686914 D hypothetical protein 686561..686914 Polaromonas naphthalenivorans CJ2 4688116 YP_980889.1 CDS Pnap_0649 NC_008781.1 687116 688150 D PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type; porin 687116..688150 Polaromonas naphthalenivorans CJ2 4686342 YP_980890.1 CDS Pnap_0650 NC_008781.1 688495 689604 D PFAM: porin, Gram-negative type; KEGG: pol:Bpro_0747 porin, gram-negative type; porin 688495..689604 Polaromonas naphthalenivorans CJ2 4687869 YP_980891.1 CDS Pnap_0651 NC_008781.1 689844 691187 D KEGG: pol:Bpro_0749 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 689844..691187 Polaromonas naphthalenivorans CJ2 4688713 YP_980892.1 CDS Pnap_0652 NC_008781.1 691329 692174 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0750 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(691329..692174) Polaromonas naphthalenivorans CJ2 4687875 YP_980893.1 CDS Pnap_0653 NC_008781.1 692176 693687 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(692176..693687) Polaromonas naphthalenivorans CJ2 4688749 YP_980894.1 CDS Pnap_0654 NC_008781.1 693791 694738 D KEGG: pol:Bpro_0752 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 693791..694738 Polaromonas naphthalenivorans CJ2 4688193 YP_980895.1 CDS pgi NC_008781.1 694761 696326 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 694761..696326 Polaromonas naphthalenivorans CJ2 4686582 YP_980896.1 CDS Pnap_0656 NC_008781.1 696423 696752 D PFAM: protein of unknown function DUF805; KEGG: pol:Bpro_0755 protein of unknown function DUF805; hypothetical protein 696423..696752 Polaromonas naphthalenivorans CJ2 4688803 YP_980897.1 CDS groEL NC_008781.1 696891 698540 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(696891..698540) Polaromonas naphthalenivorans CJ2 4687099 YP_980898.1 CDS groES NC_008781.1 698644 698934 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(698644..698934) Polaromonas naphthalenivorans CJ2 4688825 YP_980899.1 CDS Pnap_0659 NC_008781.1 699292 699978 D hypothetical protein 699292..699978 Polaromonas naphthalenivorans CJ2 4688621 YP_980900.1 CDS Pnap_0660 NC_008781.1 700053 701240 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(700053..701240) Polaromonas naphthalenivorans CJ2 4688664 YP_980901.1 CDS Pnap_0661 NC_008781.1 701410 702258 D PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_0768 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 701410..702258 Polaromonas naphthalenivorans CJ2 4686656 YP_980902.1 CDS Pnap_0662 NC_008781.1 702255 703151 D PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_0769 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 702255..703151 Polaromonas naphthalenivorans CJ2 4688926 YP_980903.1 CDS engB NC_008781.1 703264 704043 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(703264..704043) Polaromonas naphthalenivorans CJ2 4686720 YP_980904.1 CDS Pnap_0664 NC_008781.1 704244 704921 D PFAM: cytochrome c, class I; KEGG: pol:Bpro_0772 cytochrome c, class I; class I cytochrome c 704244..704921 Polaromonas naphthalenivorans CJ2 4688599 YP_980905.1 CDS Pnap_0665 NC_008781.1 705119 707347 D PFAM: ResB family protein; KEGG: pol:Bpro_0773 ResB-like; ResB family protein 705119..707347 Polaromonas naphthalenivorans CJ2 4688930 YP_980906.1 CDS Pnap_0666 NC_008781.1 707344 708735 D PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_0774 cytochrome c assembly protein; cytochrome c assembly protein 707344..708735 Polaromonas naphthalenivorans CJ2 4689160 YP_980907.1 CDS Pnap_0667 NC_008781.1 708811 709809 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 708811..709809 Polaromonas naphthalenivorans CJ2 4689159 YP_980908.1 CDS Pnap_0668 NC_008781.1 709809 710468 D PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: pol:Bpro_0776 ferric reductase-like transmembrane component-like; ferric reductase domain-containing protein 709809..710468 Polaromonas naphthalenivorans CJ2 4686722 YP_980909.1 CDS Pnap_0669 NC_008781.1 710569 711855 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pol:Bpro_0777 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(710569..711855) Polaromonas naphthalenivorans CJ2 4689207 YP_980910.1 CDS Pnap_0670 NC_008781.1 712198 712548 D PFAM: Frataxin family protein; KEGG: pol:Bpro_0779 frataxin-like; frataxin family protein 712198..712548 Polaromonas naphthalenivorans CJ2 4689480 YP_980911.1 CDS Pnap_0671 NC_008781.1 712620 715037 R KEGG: pol:Bpro_0780 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein complement(712620..715037) Polaromonas naphthalenivorans CJ2 4686743 YP_980912.1 CDS Pnap_0672 NC_008781.1 715297 716376 D TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 715297..716376 Polaromonas naphthalenivorans CJ2 4688931 YP_980913.1 CDS Pnap_0673 NC_008781.1 716487 716978 D PFAM: Fimbrial assembly family protein; KEGG: pol:Bpro_0782 fimbrial assembly; fimbrial assembly family protein 716487..716978 Polaromonas naphthalenivorans CJ2 4686747 YP_980914.1 CDS Pnap_0674 NC_008781.1 717000 717674 D PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO; pilus assembly protein PilO 717000..717674 Polaromonas naphthalenivorans CJ2 4689583 YP_980915.1 CDS Pnap_0675 NC_008781.1 717671 718222 D PFAM: Pilus assembly protein, PilQ; KEGG: pol:Bpro_0784 pilus assembly protein, PilQ; pilus assembly protein, PilQ 717671..718222 Polaromonas naphthalenivorans CJ2 4689588 YP_980916.1 CDS Pnap_0676 NC_008781.1 718219 720357 D TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: pol:Bpro_0785 type II and III secretion system protein; type IV pilus secretin PilQ 718219..720357 Polaromonas naphthalenivorans CJ2 4689651 YP_980917.1 CDS Pnap_0677 NC_008781.1 720528 722444 D KEGG: sdn:Sden_3069 hypothetical protein; hypothetical protein 720528..722444 Polaromonas naphthalenivorans CJ2 4690156 YP_980918.1 CDS aroK NC_008781.1 722456 723004 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 722456..723004 Polaromonas naphthalenivorans CJ2 4690094 YP_980919.1 CDS aroB NC_008781.1 723057 724175 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 723057..724175 Polaromonas naphthalenivorans CJ2 4689702 YP_980920.1 CDS Pnap_0680 NC_008781.1 724261 725457 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 724261..725457 Polaromonas naphthalenivorans CJ2 4689756 YP_980921.1 CDS Pnap_0681 NC_008781.1 725613 726761 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0789 extracellular ligand-binding receptor; extracellular ligand-binding receptor 725613..726761 Polaromonas naphthalenivorans CJ2 4689745 YP_980922.1 CDS Pnap_0682 NC_008781.1 726827 727525 D PFAM: protein of unknown function DUF1568; KEGG: pol:Bpro_0790 protein of unknown function DUF1568; hypothetical protein 726827..727525 Polaromonas naphthalenivorans CJ2 4689750 YP_980923.1 CDS Pnap_0683 NC_008781.1 727757 732499 D PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: pol:Bpro_0791 glutamate synthase (ferredoxin); glutamate synthase 727757..732499 Polaromonas naphthalenivorans CJ2 4686794 YP_980924.1 CDS gltD NC_008781.1 732641 734107 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 732641..734107 Polaromonas naphthalenivorans CJ2 4686808 YP_980925.1 CDS Pnap_0685 NC_008781.1 734191 735072 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2935 ABC transporter related; ABC transporter-like protein 734191..735072 Polaromonas naphthalenivorans CJ2 4689630 YP_980926.1 CDS Pnap_0686 NC_008781.1 735069 735851 D PFAM: protein of unknown function DUF140; KEGG: rfr:Rfer_2936 protein of unknown function DUF140; hypothetical protein 735069..735851 Polaromonas naphthalenivorans CJ2 4689429 YP_980927.1 CDS Pnap_0687 NC_008781.1 735933 736442 D PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0795 mammalian cell entry related; hypothetical protein 735933..736442 Polaromonas naphthalenivorans CJ2 4689622 YP_980928.1 CDS Pnap_0688 NC_008781.1 736439 737224 D PFAM: VacJ family lipoprotein; KEGG: pol:Bpro_0796 VacJ-like lipoprotein; VacJ family lipoprotein 736439..737224 Polaromonas naphthalenivorans CJ2 4686816 YP_980929.1 CDS Pnap_0689 NC_008781.1 737395 738033 D PFAM: toluene tolerance family protein; KEGG: pol:Bpro_0797 toluene tolerance; toluene tolerance family protein 737395..738033 Polaromonas naphthalenivorans CJ2 4689115 YP_980930.1 CDS Pnap_0690 NC_008781.1 738048 738341 D KEGG: pol:Bpro_0798 anti-sigma-factor antagonist (STAS) domain protein; anti-sigma-factor antagonist domain-containing protein 738048..738341 Polaromonas naphthalenivorans CJ2 4689381 YP_980931.1 CDS Pnap_0691 NC_008781.1 738437 739396 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0799 ABC transporter related; ABC transporter-like protein 738437..739396 Polaromonas naphthalenivorans CJ2 4689995 YP_980932.1 CDS Pnap_0692 NC_008781.1 739393 740148 D PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0800 ABC-2; ABC transporter 739393..740148 Polaromonas naphthalenivorans CJ2 4687074 YP_980933.1 CDS Pnap_0693 NC_008781.1 740172 740417 D PFAM: BolA family protein; KEGG: pol:Bpro_0801 BolA-like protein; BolA family protein 740172..740417 Polaromonas naphthalenivorans CJ2 4688863 YP_980934.1 CDS Pnap_0694 NC_008781.1 740423 741697 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 740423..741697 Polaromonas naphthalenivorans CJ2 4688967 YP_980935.1 CDS hisG NC_008781.1 741694 742347 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 741694..742347 Polaromonas naphthalenivorans CJ2 4689626 YP_980936.1 CDS hisD NC_008781.1 742361 743704 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 742361..743704 Polaromonas naphthalenivorans CJ2 4688733 YP_980937.1 CDS Pnap_0697 NC_008781.1 743705 744802 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 743705..744802 Polaromonas naphthalenivorans CJ2 4688298 YP_980938.1 CDS hisB NC_008781.1 744799 745419 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 744799..745419 Polaromonas naphthalenivorans CJ2 4687350 YP_980939.1 CDS hisH NC_008781.1 745444 746199 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 745444..746199 Polaromonas naphthalenivorans CJ2 4688317 YP_980940.1 CDS Pnap_0700 NC_008781.1 746283 747023 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 746283..747023 Polaromonas naphthalenivorans CJ2 4688248 YP_980941.1 CDS Pnap_0701 NC_008781.1 747031 747810 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 747031..747810 Polaromonas naphthalenivorans CJ2 4688293 YP_980942.1 CDS hisI NC_008781.1 747944 748333 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 747944..748333 Polaromonas naphthalenivorans CJ2 4688432 YP_980943.1 CDS hisE NC_008781.1 748340 748729 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 748340..748729 Polaromonas naphthalenivorans CJ2 4687461 YP_980944.1 CDS Pnap_0704 NC_008781.1 748744 749124 D KEGG: rfr:Rfer_2954 putative transmembrane protein; hypothetical protein 748744..749124 Polaromonas naphthalenivorans CJ2 4688094 YP_980945.1 CDS Pnap_0705 NC_008781.1 749121 749480 D PFAM: histidine triad (HIT) protein; KEGG: pol:Bpro_0813 histidine triad (HIT) protein; histidine triad (HIT) protein 749121..749480 Polaromonas naphthalenivorans CJ2 4688027 YP_980946.1 CDS tatA NC_008781.1 749626 749880 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 749626..749880 Polaromonas naphthalenivorans CJ2 4688018 YP_980947.1 CDS tatB NC_008781.1 749930 750397 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pol:Bpro_0815 twin-arginine translocation protein TatB; sec-independent translocase 749930..750397 Polaromonas naphthalenivorans CJ2 4687962 YP_980948.1 CDS Pnap_0708 NC_008781.1 750462 751265 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pol:Bpro_0816 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 750462..751265 Polaromonas naphthalenivorans CJ2 4687521 YP_980949.1 CDS Pnap_0709 NC_008781.1 751379 752545 R PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pol:Bpro_0817 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap complement(751379..752545) Polaromonas naphthalenivorans CJ2 4688126 YP_980950.1 CDS Pnap_0710 NC_008781.1 752740 753504 D PFAM: protein of unknown function DUF34; KEGG: pol:Bpro_0818 protein of unknown function DUF34; hypothetical protein 752740..753504 Polaromonas naphthalenivorans CJ2 4687563 YP_980951.1 CDS Pnap_0711 NC_008781.1 753501 754544 D KEGG: pol:Bpro_0819 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 753501..754544 Polaromonas naphthalenivorans CJ2 4687862 YP_980952.1 CDS mscL NC_008781.1 754552 754980 R homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(754552..754980) Polaromonas naphthalenivorans CJ2 4689194 YP_980953.1 CDS Pnap_0713 NC_008781.1 755242 755868 D KEGG: pol:Bpro_0821 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 755242..755868 Polaromonas naphthalenivorans CJ2 4687989 YP_980954.1 CDS Pnap_0714 NC_008781.1 755976 757385 D PFAM: Cytochrome b/b6, N-terminal domain; KEGG: pol:Bpro_0822 cytochrome b/b6-like; cytochrome b/b6 domain-containing protein 755976..757385 Polaromonas naphthalenivorans CJ2 4686600 YP_980955.1 CDS Pnap_0715 NC_008781.1 757402 758157 D PFAM: cytochrome c1; KEGG: pol:Bpro_0823 cytochrome c1; cytochrome c1 757402..758157 Polaromonas naphthalenivorans CJ2 4686209 YP_980956.1 CDS Pnap_0716 NC_008781.1 758277 758888 D PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_0824 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 758277..758888 Polaromonas naphthalenivorans CJ2 4686431 YP_980957.1 CDS Pnap_0717 NC_008781.1 758931 759497 D PFAM: Stringent starvation protein B; KEGG: pol:Bpro_0825 stringent starvation protein B; ClpXP protease specificity-enhancing factor 758931..759497 Polaromonas naphthalenivorans CJ2 4686273 YP_980958.1 CDS Pnap_0718 NC_008781.1 759693 760061 R KEGG: pol:Bpro_0826 hypothetical protein; hypothetical protein complement(759693..760061) Polaromonas naphthalenivorans CJ2 4689056 YP_980959.1 CDS Pnap_0719 NC_008781.1 760153 760896 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2207 ABC efflux transporter, ATP-binding protein; ABC transporter-like protein complement(760153..760896) Polaromonas naphthalenivorans CJ2 4689103 YP_980960.1 CDS Pnap_0720 NC_008781.1 760930 762063 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4137 uncharacterized protein UPF0065; hypothetical protein complement(760930..762063) Polaromonas naphthalenivorans CJ2 4689516 YP_980961.1 CDS Pnap_0721 NC_008781.1 762135 763169 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: bja:blr6189 hypothetical protein; hypothetical protein 762135..763169 Polaromonas naphthalenivorans CJ2 4689290 YP_980962.1 CDS Pnap_0722 NC_008781.1 763169 764377 D KEGG: pfl:PFL_2209 hypothetical protein; hypothetical protein 763169..764377 Polaromonas naphthalenivorans CJ2 4687833 YP_980963.1 CDS Pnap_0723 NC_008781.1 764359 765177 D PFAM: ABC-2 type transporter; KEGG: sil:SPO1510 efflux ABC transporter, permease protein; ABC transporter 764359..765177 Polaromonas naphthalenivorans CJ2 4687140 YP_980964.1 CDS Pnap_0724 NC_008781.1 765221 766036 D KEGG: dar:Daro_1025 hypothetical protein; hypothetical protein 765221..766036 Polaromonas naphthalenivorans CJ2 4686387 YP_980965.1 CDS Pnap_0725 NC_008781.1 766033 767037 D PFAM: beta-lactamase domain protein; KEGG: pfl:PFL_2220 hydrolase, putative; beta-lactamase domain-containing protein 766033..767037 Polaromonas naphthalenivorans CJ2 4686859 YP_980966.1 CDS Pnap_0726 NC_008781.1 767334 768983 D PFAM: Pyrrolo-quinoline quinone; KEGG: reu:Reut_A1784 pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 767334..768983 Polaromonas naphthalenivorans CJ2 4687708 YP_980967.1 CDS Pnap_0727 NC_008781.1 768989 769234 D hypothetical protein 768989..769234 Polaromonas naphthalenivorans CJ2 4687853 YP_980968.1 CDS Pnap_0728 NC_008781.1 769231 769563 D PFAM: cytochrome c, class I; KEGG: mfa:Mfla_2196 cytochrome c, class I; class I cytochrome c 769231..769563 Polaromonas naphthalenivorans CJ2 4687287 YP_980969.1 CDS Pnap_0729 NC_008781.1 769612 770754 R TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; KEGG: bxe:Bxe_B2470 pyrroloquinoline quinone synthesis E; pyrroloquinoline quinone biosynthesis protein PqqE complement(769612..770754) Polaromonas naphthalenivorans CJ2 4687856 YP_980970.1 CDS Pnap_0730 NC_008781.1 770738 771055 R PFAM: coenzyme PQQ synthesis D; KEGG: bxe:Bxe_B2469 pyrroloquinoline quinone synthesis D; coenzyme PQQ biosynthesis protein PqqD complement(770738..771055) Polaromonas naphthalenivorans CJ2 4690227 YP_980971.1 CDS Pnap_0731 NC_008781.1 771052 771783 R Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC complement(771052..771783) Polaromonas naphthalenivorans CJ2 4686919 YP_980972.1 CDS Pnap_0732 NC_008781.1 771798 772715 R possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB complement(771798..772715) Polaromonas naphthalenivorans CJ2 4687758 YP_980973.1 CDS Pnap_0733 NC_008781.1 772975 774072 D PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_B2466 putative proline iminopeptidase; alpha/beta hydrolase fold protein 772975..774072 Polaromonas naphthalenivorans CJ2 4689541 YP_980974.1 CDS Pnap_0734 NC_008781.1 774127 775158 D PFAM: beta-lactamase domain protein; KEGG: rsp:RSP_2589 hypothetical protein; beta-lactamase domain-containing protein 774127..775158 Polaromonas naphthalenivorans CJ2 4687596 YP_980975.1 CDS Pnap_0735 NC_008781.1 775135 777186 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: rme:Rmet_5127 sigma54 specific transcriptional regulator with GAF sensor, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator complement(775135..777186) Polaromonas naphthalenivorans CJ2 4686432 YP_980976.1 CDS Pnap_0736 NC_008781.1 777567 778088 D KEGG: reu:Reut_A1777 cytochrome c-type protein; cytochrome c-type protein 777567..778088 Polaromonas naphthalenivorans CJ2 4686557 YP_980977.1 CDS Pnap_0737 NC_008781.1 778165 779070 D SMART: extracellular solute-binding protein, family 3; KEGG: reu:Reut_A1776 extracellular solute-binding protein, family 3; extracellular solute-binding protein 778165..779070 Polaromonas naphthalenivorans CJ2 4688408 YP_980978.1 CDS Pnap_0738 NC_008781.1 779448 782213 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 779448..782213 Polaromonas naphthalenivorans CJ2 4688504 YP_980979.1 CDS argJ NC_008781.1 782283 783524 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 782283..783524 Polaromonas naphthalenivorans CJ2 4689605 YP_980980.1 CDS Pnap_0740 NC_008781.1 783543 784424 D PFAM: protein of unknown function DUF815; KEGG: pol:Bpro_0830 protein of unknown function DUF815; hypothetical protein 783543..784424 Polaromonas naphthalenivorans CJ2 4689139 YP_980981.1 CDS Pnap_0741 NC_008781.1 784433 784888 D PFAM: NUDIX hydrolase; KEGG: pol:Bpro_0831 NUDIX hydrolase; NUDIX hydrolase 784433..784888 Polaromonas naphthalenivorans CJ2 4688659 YP_980982.1 CDS Pnap_0742 NC_008781.1 784911 787361 R PFAM: Patatin; KEGG: pol:Bpro_2089 patatin; patatin complement(784911..787361) Polaromonas naphthalenivorans CJ2 4688747 YP_980983.1 CDS Pnap_0743 NC_008781.1 787586 788905 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cvi:CV4242 hypothetical protein; hypothetical protein 787586..788905 Polaromonas naphthalenivorans CJ2 4687871 YP_980984.1 CDS Pnap_0744 NC_008781.1 788918 789583 R PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0832 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit complement(788918..789583) Polaromonas naphthalenivorans CJ2 4687418 YP_980985.1 CDS Pnap_0745 NC_008781.1 789611 791356 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(789611..791356) Polaromonas naphthalenivorans CJ2 4686163 YP_980986.1 CDS Pnap_0746 NC_008781.1 791460 792167 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 791460..792167 Polaromonas naphthalenivorans CJ2 4686584 YP_980987.1 CDS Pnap_0747 NC_008781.1 792164 792676 D KEGG: pol:Bpro_0835 hypothetical protein; hypothetical protein 792164..792676 Polaromonas naphthalenivorans CJ2 4687398 YP_980988.1 CDS Pnap_0748 NC_008781.1 792718 793854 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(792718..793854) Polaromonas naphthalenivorans CJ2 4688725 YP_980989.1 CDS obgE NC_008781.1 793955 795049 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(793955..795049) Polaromonas naphthalenivorans CJ2 4689261 YP_980990.1 CDS rpmA NC_008781.1 795146 795403 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(795146..795403) Polaromonas naphthalenivorans CJ2 4689912 YP_980991.1 CDS rplU NC_008781.1 795431 795742 R PFAM: ribosomal protein L21; KEGG: pol:Bpro_0839 ribosomal protein L21; 50S ribosomal protein L21 complement(795431..795742) Polaromonas naphthalenivorans CJ2 4687358 YP_980992.1 CDS Pnap_0752 NC_008781.1 795910 796893 D PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_0840 trans-hexaprenyltranstransferase; trans-hexaprenyltranstransferase 795910..796893 Polaromonas naphthalenivorans CJ2 4687385 YP_980993.1 CDS Pnap_0753 NC_008781.1 797060 797686 R TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rfr:Rfer_2496 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(797060..797686) Polaromonas naphthalenivorans CJ2 4688086 YP_980994.1 CDS Pnap_0754 NC_008781.1 797733 798971 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: rfr:Rfer_0544 general secretion pathway protein F; general secretion pathway protein F complement(797733..798971) Polaromonas naphthalenivorans CJ2 4687902 YP_980995.1 CDS Pnap_0755 NC_008781.1 798974 800383 R KEGG: rfr:Rfer_0543 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E complement(798974..800383) Polaromonas naphthalenivorans CJ2 4689504 YP_980996.1 CDS Pnap_0756 NC_008781.1 800387 802603 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pol:Bpro_1329 type II and III secretion system protein; general secretion pathway protein D complement(800387..802603) Polaromonas naphthalenivorans CJ2 4689724 YP_980997.1 CDS Pnap_0757 NC_008781.1 802610 803413 R KEGG: rfr:Rfer_0541 putative general secretory pathway N transmembrane protein; putative general secretory pathway N transmembrane protein complement(802610..803413) Polaromonas naphthalenivorans CJ2 4686851 YP_980998.1 CDS Pnap_0758 NC_008781.1 803422 803925 R KEGG: pol:Bpro_1327 hypothetical protein; hypothetical protein complement(803422..803925) Polaromonas naphthalenivorans CJ2 4687048 YP_980999.1 CDS Pnap_0759 NC_008781.1 803922 805157 R KEGG: rfr:Rfer_0539 hypothetical protein; hypothetical protein complement(803922..805157) Polaromonas naphthalenivorans CJ2 4686465 YP_981000.1 CDS Pnap_0760 NC_008781.1 805178 806209 R PFAM: General secretion pathway protein K; KEGG: pol:Bpro_1325 general secretion pathway protein K; general secretion pathway protein K complement(805178..806209) Polaromonas naphthalenivorans CJ2 4689929 YP_981001.1 CDS Pnap_0761 NC_008781.1 806206 806922 R KEGG: rfr:Rfer_0537 methylation; methylation complement(806206..806922) Polaromonas naphthalenivorans CJ2 4689355 YP_981002.1 CDS Pnap_0762 NC_008781.1 806925 807302 R TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: pol:Bpro_1323 general secretion pathway protein I; general secretion pathway protein I complement(806925..807302) Polaromonas naphthalenivorans CJ2 4688312 YP_981003.1 CDS Pnap_0763 NC_008781.1 807302 807868 R TIGRFAM: general secretion pathway protein H; KEGG: rfr:Rfer_0535 general secretion pathway protein H; general secretion pathway protein H complement(807302..807868) Polaromonas naphthalenivorans CJ2 4686369 YP_981004.1 CDS Pnap_0764 NC_008781.1 807843 808262 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rfr:Rfer_0534 general secretion pathway protein G; general secretion pathway protein G complement(807843..808262) Polaromonas naphthalenivorans CJ2 4686510 YP_981005.1 CDS Pnap_0765 NC_008781.1 808319 808765 D KEGG: rfr:Rfer_0533 hypothetical protein; hypothetical protein 808319..808765 Polaromonas naphthalenivorans CJ2 4686653 YP_981006.1 CDS Pnap_0766 NC_008781.1 808992 810728 D TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: pol:Bpro_0841 type II secretion system protein E; type IV-A pilus assembly ATPase PilB 808992..810728 Polaromonas naphthalenivorans CJ2 4687119 YP_981007.1 CDS Pnap_0767 NC_008781.1 810814 812031 D PFAM: type II secretion system protein; KEGG: pol:Bpro_0842 type II secretion system protein; type II secretion system protein 810814..812031 Polaromonas naphthalenivorans CJ2 4689223 YP_981008.1 CDS Pnap_0768 NC_008781.1 812031 812882 D PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: pol:Bpro_0843 prepilin peptidase; prepilin peptidase 812031..812882 Polaromonas naphthalenivorans CJ2 4686420 YP_981009.1 CDS coaE NC_008781.1 812887 813498 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 812887..813498 Polaromonas naphthalenivorans CJ2 4687026 YP_981010.1 CDS Pnap_0770 NC_008781.1 813538 814293 D PFAM: protein of unknown function DUF1342; KEGG: pol:Bpro_0845 protein of unknown function DUF1342; hypothetical protein 813538..814293 Polaromonas naphthalenivorans CJ2 4687007 YP_981011.1 CDS Pnap_0771 NC_008781.1 814352 814558 D PFAM: protein of unknown function DUF329; KEGG: pol:Bpro_0846 protein of unknown function DUF329; hypothetical protein 814352..814558 Polaromonas naphthalenivorans CJ2 4687378 YP_981012.1 CDS Pnap_0772 NC_008781.1 814636 814896 D KEGG: pol:Bpro_0847 hypothetical protein; hypothetical protein 814636..814896 Polaromonas naphthalenivorans CJ2 4687615 YP_981013.1 CDS Pnap_0773 NC_008781.1 814938 815267 R TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: pol:Bpro_0848 glutaredoxin-related protein; glutaredoxin-like protein complement(814938..815267) Polaromonas naphthalenivorans CJ2 4688526 YP_981014.1 CDS Pnap_0774 NC_008781.1 815423 816274 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_0849 modification methylase, HemK family; HemK family modification methylase complement(815423..816274) Polaromonas naphthalenivorans CJ2 4689086 YP_981015.1 CDS prfA NC_008781.1 816371 817492 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(816371..817492) Polaromonas naphthalenivorans CJ2 4689933 YP_981016.1 CDS hemA NC_008781.1 817590 818879 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(817590..818879) Polaromonas naphthalenivorans CJ2 4689755 YP_981017.1 CDS Pnap_0777 NC_008781.1 818991 819281 D KEGG: pol:Bpro_0852 hypothetical protein; hypothetical protein 818991..819281 Polaromonas naphthalenivorans CJ2 4689827 YP_981018.1 CDS Pnap_0778 NC_008781.1 819593 823390 D PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: pol:Bpro_0858 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 819593..823390 Polaromonas naphthalenivorans CJ2 4689291 YP_981019.1 CDS Pnap_0779 NC_008781.1 823393 823821 D PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1289 histidine triad (HIT) protein; histidine triad (HIT) protein 823393..823821 Polaromonas naphthalenivorans CJ2 4689280 YP_981020.1 CDS Pnap_0780 NC_008781.1 823860 824273 D PFAM: protein of unknown function DUF971; KEGG: pol:Bpro_0859 protein of unknown function DUF971; hypothetical protein 823860..824273 Polaromonas naphthalenivorans CJ2 4689214 YP_981021.1 CDS Pnap_0781 NC_008781.1 824284 825015 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_0860 ubiquinone/menaquinone biosynthesis methyltransferases; ubiquinone/menaquinone biosynthesis methyltransferase 824284..825015 Polaromonas naphthalenivorans CJ2 4688590 YP_981022.1 CDS Pnap_0782 NC_008781.1 825074 826066 D PFAM: import inner membrane translocase, subunit Tim44; KEGG: pol:Bpro_0861 import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 825074..826066 Polaromonas naphthalenivorans CJ2 4687896 YP_981023.1 CDS Pnap_0783 NC_008781.1 826157 826852 D KEGG: pol:Bpro_0862 hypothetical protein; hypothetical protein 826157..826852 Polaromonas naphthalenivorans CJ2 4687859 YP_981024.1 CDS ubiB NC_008781.1 826849 828402 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB 826849..828402 Polaromonas naphthalenivorans CJ2 4687846 YP_981025.1 CDS Pnap_0785 NC_008781.1 828532 828894 D TIGRFAM: putative regulatory protein, FmdB family; KEGG: pol:Bpro_0864 hypothetical protein; FmdB family regulatory protein 828532..828894 Polaromonas naphthalenivorans CJ2 4687776 YP_981026.1 CDS Pnap_0786 NC_008781.1 828891 829523 D PFAM: protein of unknown function DUF502; KEGG: pol:Bpro_0865 protein of unknown function DUF502; hypothetical protein 828891..829523 Polaromonas naphthalenivorans CJ2 4687778 YP_981027.1 CDS aspS NC_008781.1 829561 831378 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 829561..831378 Polaromonas naphthalenivorans CJ2 4687956 YP_981028.1 CDS Pnap_0788 NC_008781.1 831458 831901 R PFAM: UspA domain protein; KEGG: pol:Bpro_4308 UspA; UspA domain-containing protein complement(831458..831901) Polaromonas naphthalenivorans CJ2 4689210 YP_981029.1 CDS Pnap_0789 NC_008781.1 832296 833117 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_4297 PAS/PAC sensor signal transduction histidine kinase; histidine kinase 832296..833117 Polaromonas naphthalenivorans CJ2 4686377 YP_981030.1 CDS Pnap_0790 NC_008781.1 833114 833758 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_4296 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 833114..833758 Polaromonas naphthalenivorans CJ2 4687442 YP_981031.1 CDS Pnap_0791 NC_008781.1 833945 834340 D PFAM: response regulator receiver; KEGG: pol:Bpro_1169 response regulator receiver domain protein (CheY-like); response regulator receiver protein 833945..834340 Polaromonas naphthalenivorans CJ2 4687970 YP_981032.1 CDS Pnap_0792 NC_008781.1 834376 835164 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pol:Bpro_4294 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 834376..835164 Polaromonas naphthalenivorans CJ2 4687773 YP_981033.1 CDS Pnap_0793 NC_008781.1 835187 835780 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pol:Bpro_1192 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(835187..835780) Polaromonas naphthalenivorans CJ2 4687897 YP_981034.1 CDS Pnap_0794 NC_008781.1 835877 836344 R KEGG: pol:Bpro_1203 hypothetical protein; hypothetical protein complement(835877..836344) Polaromonas naphthalenivorans CJ2 4688864 YP_981035.1 CDS Pnap_0795 NC_008781.1 836871 837173 R hypothetical protein complement(836871..837173) Polaromonas naphthalenivorans CJ2 4687678 YP_981036.1 CDS Pnap_0796 NC_008781.1 837476 839332 D catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 837476..839332 Polaromonas naphthalenivorans CJ2 4690154 YP_981037.1 CDS Pnap_0797 NC_008781.1 839349 840599 D KEGG: pol:Bpro_3113 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 839349..840599 Polaromonas naphthalenivorans CJ2 4689033 YP_981038.1 CDS Pnap_0798 NC_008781.1 840814 841578 D PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR; KEGG: rfr:Rfer_0271 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 840814..841578 Polaromonas naphthalenivorans CJ2 4688172 YP_981039.1 CDS Pnap_0799 NC_008781.1 841598 842017 D PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0270 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 841598..842017 Polaromonas naphthalenivorans CJ2 4686761 YP_981040.1 CDS Pnap_0800 NC_008781.1 842059 843192 D PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0269 extracellular ligand-binding receptor; extracellular ligand-binding receptor 842059..843192 Polaromonas naphthalenivorans CJ2 4687047 YP_981041.1 CDS Pnap_0801 NC_008781.1 843281 844321 D PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0268 inner-membrane translocator; inner-membrane translocator 843281..844321 Polaromonas naphthalenivorans CJ2 4687211 YP_981042.1 CDS Pnap_0802 NC_008781.1 844323 846089 D PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0267 ABC transporter related; ABC transporter-like protein 844323..846089 Polaromonas naphthalenivorans CJ2 4690037 YP_981043.1 CDS Pnap_0803 NC_008781.1 846101 846859 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0266 ABC transporter related; ABC transporter-like protein 846101..846859 Polaromonas naphthalenivorans CJ2 4688879 YP_981044.1 CDS Pnap_0804 NC_008781.1 847025 848146 D KEGG: pol:Bpro_3117 porin, gram-negative type; porin 847025..848146 Polaromonas naphthalenivorans CJ2 4690150 YP_981045.1 CDS Pnap_0805 NC_008781.1 848171 849157 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0198 twin-arginine translocation pathway signal; hypothetical protein 848171..849157 Polaromonas naphthalenivorans CJ2 4686657 YP_981046.1 CDS Pnap_0806 NC_008781.1 849274 850965 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3118 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 849274..850965 Polaromonas naphthalenivorans CJ2 4686125 YP_981047.1 CDS Pnap_0807 NC_008781.1 850962 851555 D PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3119 transcriptional regulator, MarR family; MarR family transcriptional regulator 850962..851555 Polaromonas naphthalenivorans CJ2 4689469 YP_981048.1 CDS Pnap_0808 NC_008781.1 851709 852260 D TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_1332 GreA/GreB family elongation factor; transcription elongation factor GreB 851709..852260 Polaromonas naphthalenivorans CJ2 4687469 YP_981049.1 CDS Pnap_0809 NC_008781.1 852358 854595 R KEGG: pol:Bpro_1333 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA complement(852358..854595) Polaromonas naphthalenivorans CJ2 4686055 YP_981050.1 CDS Pnap_0810 NC_008781.1 854713 854916 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(854713..854916) Polaromonas naphthalenivorans CJ2 4689547 YP_981051.1 CDS gmk NC_008781.1 854942 855562 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(854942..855562) Polaromonas naphthalenivorans CJ2 4686408 YP_981052.1 CDS Pnap_0812 NC_008781.1 855615 856532 R PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: pol:Bpro_1336 conserved hypothetical protein 255; hypothetical protein complement(855615..856532) Polaromonas naphthalenivorans CJ2 4686403 YP_981053.1 CDS Pnap_0813 NC_008781.1 856598 857605 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pol:Bpro_1337 serine/threonine protein kinase; protein kinase 856598..857605 Polaromonas naphthalenivorans CJ2 4686419 YP_981054.1 CDS Pnap_0814 NC_008781.1 857602 858501 D PFAM: protein phosphatase 2C domain protein; KEGG: pol:Bpro_1338 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein 857602..858501 Polaromonas naphthalenivorans CJ2 4686426 YP_981055.1 CDS Pnap_0815 NC_008781.1 858598 859206 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 858598..859206 Polaromonas naphthalenivorans CJ2 4686414 YP_981056.1 CDS Pnap_0816 NC_008781.1 859225 860415 D KEGG: pol:Bpro_1341 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 859225..860415 Polaromonas naphthalenivorans CJ2 4686413 YP_981057.1 CDS Pnap_0817 NC_008781.1 860439 860696 D KEGG: pol:Bpro_1342 hypothetical protein; hypothetical protein 860439..860696 Polaromonas naphthalenivorans CJ2 4686448 YP_981058.1 CDS metG NC_008781.1 860973 863096 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(860973..863096) Polaromonas naphthalenivorans CJ2 4686437 YP_981059.1 CDS Pnap_0819 NC_008781.1 863303 865672 D KEGG: pol:Bpro_0925 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 863303..865672 Polaromonas naphthalenivorans CJ2 4686351 YP_981060.1 CDS Pnap_0820 NC_008781.1 865711 867438 D PFAM: PHP C-terminal domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding, class 1; KEGG: rfr:Rfer_0829 PHP-like; phosphotransferase domain-containing protein 865711..867438 Polaromonas naphthalenivorans CJ2 4690106 YP_981061.1 CDS Pnap_0821 NC_008781.1 867529 868074 D TIGRFAM: ribosomal subunit interface protein; PFAM: Cold-shock protein, DNA-binding; KEGG: rfr:Rfer_3849 putative sigma 54 modulation protein/ribosomal protein S30EA; putative sigma 54 modulation protein/ribosomal protein S30EA 867529..868074 Polaromonas naphthalenivorans CJ2 4686386 YP_981062.1 CDS Pnap_0822 NC_008781.1 868226 869317 D PFAM: protein of unknown function DUF59; KEGG: pol:Bpro_0931 putative iron sulfur binding protein; hypothetical protein 868226..869317 Polaromonas naphthalenivorans CJ2 4686458 YP_981063.1 CDS Pnap_0823 NC_008781.1 869369 870319 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_1077 transcriptional regulator, LysR family; LysR family transcriptional regulator 869369..870319 Polaromonas naphthalenivorans CJ2 4686468 YP_981064.1 CDS Pnap_0824 NC_008781.1 870396 871472 D hypothetical protein 870396..871472 Polaromonas naphthalenivorans CJ2 4686496 YP_981065.1 CDS Pnap_0825 NC_008781.1 871599 873401 D PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 871599..873401 Polaromonas naphthalenivorans CJ2 4686530 YP_981066.1 CDS Pnap_0828 NC_008781.1 876417 877262 D KEGG: bpm:BURPS1710b_A1716 hypothetical protein; hypothetical protein 876417..877262 Polaromonas naphthalenivorans CJ2 4686564 YP_981067.1 CDS Pnap_0829 NC_008781.1 877408 877905 R PFAM: NLP/P60 protein; KEGG: dar:Daro_3747 NLP/P60; NLP/P60 protein complement(877408..877905) Polaromonas naphthalenivorans CJ2 4686574 YP_981068.1 CDS Pnap_0830 NC_008781.1 878133 878663 D KEGG: pol:Bpro_0932 hypothetical protein; hypothetical protein 878133..878663 Polaromonas naphthalenivorans CJ2 4686579 YP_981069.1 CDS Pnap_0831 NC_008781.1 878656 879369 D KEGG: pol:Bpro_0933 hypothetical protein; hypothetical protein 878656..879369 Polaromonas naphthalenivorans CJ2 4686604 YP_981070.1 CDS Pnap_0832 NC_008781.1 879296 881428 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3264 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 879296..881428 Polaromonas naphthalenivorans CJ2 4686580 YP_981071.1 CDS Pnap_0833 NC_008781.1 881444 882058 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: pol:Bpro_0935 cytoplasmic chaperone TorD; cytoplasmic chaperone TorD family protein 881444..882058 Polaromonas naphthalenivorans CJ2 4687338 YP_981072.1 CDS Pnap_0834 NC_008781.1 882477 885452 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pol:Bpro_0937 twin-arginine translocation pathway signal; molybdopterin oxidoreductase 882477..885452 Polaromonas naphthalenivorans CJ2 4686615 YP_981073.1 CDS Pnap_0835 NC_008781.1 885457 886077 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_0938 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 885457..886077 Polaromonas naphthalenivorans CJ2 4686664 YP_981074.1 CDS Pnap_0836 NC_008781.1 886074 886301 D KEGG: pol:Bpro_0939 putative lipoprotein; putative lipoprotein 886074..886301 Polaromonas naphthalenivorans CJ2 4686676 YP_981075.1 CDS Pnap_0837 NC_008781.1 886318 887490 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: pol:Bpro_0940 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 886318..887490 Polaromonas naphthalenivorans CJ2 4687270 YP_981076.1 CDS Pnap_0838 NC_008781.1 887513 887908 D KEGG: pol:Bpro_0941 hypothetical protein; hypothetical protein 887513..887908 Polaromonas naphthalenivorans CJ2 4687362 YP_981077.1 CDS Pnap_0839 NC_008781.1 887975 888847 D PFAM: formate dehydrogenase, subunit FdhD; KEGG: pol:Bpro_0942 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD 887975..888847 Polaromonas naphthalenivorans CJ2 4687324 YP_981078.1 CDS Pnap_0840 NC_008781.1 888926 889900 R PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1763 hypothetical protein; hypothetical protein complement(888926..889900) Polaromonas naphthalenivorans CJ2 4687427 YP_981079.1 CDS Pnap_0841 NC_008781.1 889959 890723 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_A1762 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(889959..890723) Polaromonas naphthalenivorans CJ2 4687382 YP_981080.1 CDS Pnap_0842 NC_008781.1 890720 891457 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rme:Rmet_4907 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(890720..891457) Polaromonas naphthalenivorans CJ2 4687355 YP_981081.1 CDS Pnap_0843 NC_008781.1 891454 892428 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2294 uncharacterized protein UPF0065; hypothetical protein complement(891454..892428) Polaromonas naphthalenivorans CJ2 4687407 YP_981082.1 CDS Pnap_0844 NC_008781.1 892486 893439 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: reu:Reut_A1761 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(892486..893439) Polaromonas naphthalenivorans CJ2 4687429 YP_981083.1 CDS Pnap_0845 NC_008781.1 893581 894753 D PFAM: Citrate synthase; KEGG: reu:Reut_A1760 citrate synthase; citrate synthase 893581..894753 Polaromonas naphthalenivorans CJ2 4687432 YP_981084.1 CDS Pnap_0846 NC_008781.1 894869 897445 D PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_0944 protein of unknown function DUF214; hypothetical protein 894869..897445 Polaromonas naphthalenivorans CJ2 4687430 YP_981085.1 CDS Pnap_0847 NC_008781.1 897460 897891 D PFAM: globin; KEGG: pol:Bpro_0945 globin; globin 897460..897891 Polaromonas naphthalenivorans CJ2 4687422 YP_981086.1 CDS Pnap_0848 NC_008781.1 898032 899366 D hypothetical protein 898032..899366 Polaromonas naphthalenivorans CJ2 4687459 YP_981087.1 CDS Pnap_0849 NC_008781.1 899381 900997 D PFAM: MORN repeat-containing protein; KEGG: lma:LmjF30.3310 hypothetical protein, conserved; MORN repeat-containing protein 899381..900997 Polaromonas naphthalenivorans CJ2 4687447 YP_981088.1 CDS Pnap_0850 NC_008781.1 901097 902194 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1148 ABC transporter related; ABC transporter-like protein complement(901097..902194) Polaromonas naphthalenivorans CJ2 4687239 YP_981089.1 CDS Pnap_0851 NC_008781.1 902279 903901 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1149 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 902279..903901 Polaromonas naphthalenivorans CJ2 4687475 YP_981090.1 CDS Pnap_0852 NC_008781.1 904080 904301 D PFAM: CsbD family protein; KEGG: pol:Bpro_1152 CsbD-like; CsbD family protein 904080..904301 Polaromonas naphthalenivorans CJ2 4687444 YP_981091.1 CDS Pnap_0853 NC_008781.1 904357 904926 D KEGG: pol:Bpro_1153 hypothetical protein; hypothetical protein 904357..904926 Polaromonas naphthalenivorans CJ2 4687492 YP_981092.1 CDS Pnap_0854 NC_008781.1 905043 905357 R hypothetical protein complement(905043..905357) Polaromonas naphthalenivorans CJ2 4687942 YP_981093.1 CDS Pnap_0855 NC_008781.1 905437 907767 D PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sensor histidine kinase/response regulator; GAF sensor hybrid histidine kinase 905437..907767 Polaromonas naphthalenivorans CJ2 4687951 YP_981094.1 CDS Pnap_0856 NC_008781.1 907982 912022 R PFAM: protein of unknown function DUF490; KEGG: pol:Bpro_1217 protein of unknown function DUF490; hypothetical protein complement(907982..912022) Polaromonas naphthalenivorans CJ2 4687451 YP_981095.1 CDS Pnap_0857 NC_008781.1 912022 913977 R PFAM: surface antigen (D15); KEGG: pol:Bpro_1218 surface antigen (D15); surface antigen (D15) complement(912022..913977) Polaromonas naphthalenivorans CJ2 4687980 YP_981096.1 CDS Pnap_0858 NC_008781.1 914044 915267 R KEGG: pol:Bpro_1219 hypothetical protein; hypothetical protein complement(914044..915267) Polaromonas naphthalenivorans CJ2 4688001 YP_981097.1 CDS Pnap_0859 NC_008781.1 915283 915879 R KEGG: pol:Bpro_1220 hypothetical protein; hypothetical protein complement(915283..915879) Polaromonas naphthalenivorans CJ2 4687986 YP_981098.1 CDS Pnap_0860 NC_008781.1 915904 916746 R PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1222 ATPase associated with various cellular activities, AAA_5; ATPase complement(915904..916746) Polaromonas naphthalenivorans CJ2 4687984 YP_981099.1 CDS Pnap_0861 NC_008781.1 916879 917556 D PFAM: cytochrome c, class I; KEGG: pol:Bpro_1223 cytochrome c, class I; class I cytochrome c 916879..917556 Polaromonas naphthalenivorans CJ2 4688069 YP_981100.1 CDS Pnap_0862 NC_008781.1 917643 918077 R KEGG: pol:Bpro_1226 hypothetical protein; hypothetical protein complement(917643..918077) Polaromonas naphthalenivorans CJ2 4688044 YP_981101.1 CDS Pnap_0863 NC_008781.1 918232 918453 D KEGG: pol:Bpro_1227 hypothetical protein; hypothetical protein 918232..918453 Polaromonas naphthalenivorans CJ2 4688048 YP_981102.1 CDS Pnap_0864 NC_008781.1 918486 919322 R TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1228 transcriptional regulator, IclR family; beta-ketoadipate pathway transcription regulator complement(918486..919322) Polaromonas naphthalenivorans CJ2 4688091 YP_981103.1 CDS Pnap_0865 NC_008781.1 919468 920178 D KEGG: pol:Bpro_1229 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 919468..920178 Polaromonas naphthalenivorans CJ2 4688093 YP_981104.1 CDS Pnap_0866 NC_008781.1 920197 920841 D KEGG: pol:Bpro_1230 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 920197..920841 Polaromonas naphthalenivorans CJ2 4687784 YP_981105.1 CDS Pnap_0867 NC_008781.1 920891 922099 D KEGG: pol:Bpro_1231 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase 920891..922099 Polaromonas naphthalenivorans CJ2 4688117 YP_981106.1 CDS Pnap_0868 NC_008781.1 922105 922839 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_B5588 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 922105..922839 Polaromonas naphthalenivorans CJ2 4688133 YP_981107.1 CDS Pnap_0869 NC_008781.1 922885 923904 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein 922885..923904 Polaromonas naphthalenivorans CJ2 4688137 YP_981108.1 CDS Pnap_0870 NC_008781.1 923909 924550 R PFAM: protein of unknown function UPF0126; KEGG: rme:Rmet_0682 protein of unknown function UPF0126; hypothetical protein complement(923909..924550) Polaromonas naphthalenivorans CJ2 4688145 YP_981109.1 CDS Pnap_0871 NC_008781.1 924706 925743 D KEGG: xom:XOO_3993 ISXo7 transposase; ISXo7 transposase 924706..925743 Polaromonas naphthalenivorans CJ2 4687864 YP_981110.1 CDS Pnap_0872 NC_008781.1 925769 927676 R transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC complement(925769..927676) Polaromonas naphthalenivorans CJ2 4688189 YP_981111.1 CDS Pnap_0873 NC_008781.1 927738 928193 D PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_1240 MaoC-like dehydratase; dehydratase 927738..928193 Polaromonas naphthalenivorans CJ2 4687872 YP_981112.1 CDS Pnap_0874 NC_008781.1 928215 928694 R TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_1241 RNA methyltransferase TrmH, group 2; RNA methyltransferase complement(928215..928694) Polaromonas naphthalenivorans CJ2 4688147 YP_981113.1 CDS Pnap_0875 NC_008781.1 928765 929532 R KEGG: pol:Bpro_1242 hypothetical protein; hypothetical protein complement(928765..929532) Polaromonas naphthalenivorans CJ2 4688220 YP_981114.1 CDS Pnap_0876 NC_008781.1 929576 930478 D KEGG: pol:Bpro_1243 biotin synthesis protein BioC; biotin synthesis protein BioC 929576..930478 Polaromonas naphthalenivorans CJ2 4688734 YP_981115.1 CDS Pnap_0877 NC_008781.1 930646 931140 D KEGG: pol:Bpro_1244 putative transmembrane protein; hypothetical protein 930646..931140 Polaromonas naphthalenivorans CJ2 4688729 YP_981116.1 CDS Pnap_0878 NC_008781.1 931255 932460 D PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: pol:Bpro_1245 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 931255..932460 Polaromonas naphthalenivorans CJ2 4688736 YP_981117.1 CDS Pnap_0879 NC_008781.1 932554 934188 D PFAM: cytochrome c oxidase, subunit I; KEGG: pol:Bpro_1246 cytochrome-c oxidase; cytochrome-c oxidase 932554..934188 Polaromonas naphthalenivorans CJ2 4688774 YP_981118.1 CDS Pnap_0880 NC_008781.1 934350 934928 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 934350..934928 Polaromonas naphthalenivorans CJ2 4688745 YP_981119.1 CDS Pnap_0881 NC_008781.1 934925 935137 D KEGG: pol:Bpro_1248 hypothetical protein; hypothetical protein 934925..935137 Polaromonas naphthalenivorans CJ2 4688744 YP_981120.1 CDS Pnap_0882 NC_008781.1 935197 936078 D PFAM: cytochrome c oxidase, subunit III; KEGG: pol:Bpro_1249 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 935197..936078 Polaromonas naphthalenivorans CJ2 4688767 YP_981121.1 CDS Pnap_0883 NC_008781.1 936164 936385 R KEGG: pol:Bpro_1250 putative transmembrane protein; hypothetical protein complement(936164..936385) Polaromonas naphthalenivorans CJ2 4688788 YP_981122.1 CDS Pnap_0884 NC_008781.1 936404 937150 D KEGG: pol:Bpro_1251 putative transmembrane cytochrome oxidase; putative transmembrane cytochrome oxidase 936404..937150 Polaromonas naphthalenivorans CJ2 4688772 YP_981123.1 CDS Pnap_0885 NC_008781.1 937309 937881 D KEGG: pol:Bpro_1252 hypothetical protein; hypothetical protein 937309..937881 Polaromonas naphthalenivorans CJ2 4688817 YP_981124.1 CDS Pnap_0886 NC_008781.1 938028 939206 D PFAM: cytochrome oxidase assembly; KEGG: pol:Bpro_1253 cytochrome oxidase assembly; cytochrome oxidase assembly 938028..939206 Polaromonas naphthalenivorans CJ2 4688791 YP_981125.1 CDS Pnap_0887 NC_008781.1 939203 940123 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 939203..940123 Polaromonas naphthalenivorans CJ2 4688750 YP_981126.1 CDS Pnap_0888 NC_008781.1 940120 940752 D PFAM: electron transport protein SCO1/SenC; KEGG: pol:Bpro_1255 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 940120..940752 Polaromonas naphthalenivorans CJ2 4688587 YP_981127.1 CDS Pnap_0889 NC_008781.1 940820 941788 R TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; KEGG: pol:Bpro_1256 sigma 32 (RpoH); RNA polymerase sigma-32 subunit RpoH complement(940820..941788) Polaromonas naphthalenivorans CJ2 4688799 YP_981128.1 CDS Pnap_0890 NC_008781.1 942058 942345 R KEGG: pol:Bpro_1272 hypothetical protein; hypothetical protein complement(942058..942345) Polaromonas naphthalenivorans CJ2 4688835 YP_981129.1 CDS Pnap_0891 NC_008781.1 942444 943616 R KEGG: pol:Bpro_1278 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(942444..943616) Polaromonas naphthalenivorans CJ2 4688827 YP_981130.1 CDS Pnap_0892 NC_008781.1 943645 945144 D PFAM: peptidase M16 domain protein; KEGG: pol:Bpro_1279 peptidase M16-like; peptidase M16 domain-containing protein 943645..945144 Polaromonas naphthalenivorans CJ2 4688842 YP_981131.1 CDS Pnap_0893 NC_008781.1 945176 946531 D PFAM: peptidase M16 domain protein; KEGG: pol:Bpro_1280 peptidase M16-like; peptidase M16 domain-containing protein 945176..946531 Polaromonas naphthalenivorans CJ2 4688860 YP_981132.1 CDS Pnap_0894 NC_008781.1 946528 947202 D TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: pol:Bpro_1281 conserved hypothetical protein 95; putative methyltransferase 946528..947202 Polaromonas naphthalenivorans CJ2 4688846 YP_981133.1 CDS Pnap_0895 NC_008781.1 947268 947789 D KEGG: pol:Bpro_1282 coenzyme A biosynthesis protein; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 947268..947789 Polaromonas naphthalenivorans CJ2 4688877 YP_981134.1 CDS Pnap_0896 NC_008781.1 947794 948063 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_1283 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 947794..948063 Polaromonas naphthalenivorans CJ2 4688684 YP_981135.1 CDS Pnap_0897 NC_008781.1 948167 948859 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(948167..948859) Polaromonas naphthalenivorans CJ2 4688888 YP_981136.1 CDS Pnap_0898 NC_008781.1 948954 949610 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(948954..949610) Polaromonas naphthalenivorans CJ2 4688889 YP_981137.1 CDS Pnap_0899 NC_008781.1 949720 950694 R KEGG: pol:Bpro_1293 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase complement(949720..950694) Polaromonas naphthalenivorans CJ2 4688896 YP_981138.1 CDS ipk NC_008781.1 951061 951954 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(951061..951954) Polaromonas naphthalenivorans CJ2 4686996 YP_981139.1 CDS Pnap_0901 NC_008781.1 951999 952511 R KEGG: pol:Bpro_1295 putative lipoprotein; putative lipoprotein complement(951999..952511) Polaromonas naphthalenivorans CJ2 4688908 YP_981140.1 CDS Pnap_0902 NC_008781.1 952524 954401 R SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1296 tetratricopeptide TPR_4; hypothetical protein complement(952524..954401) Polaromonas naphthalenivorans CJ2 4688679 YP_981141.1 CDS Pnap_0903 NC_008781.1 954445 955260 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 954445..955260 Polaromonas naphthalenivorans CJ2 4689430 YP_981142.1 CDS Pnap_0904 NC_008781.1 955325 957301 D KEGG: pol:Bpro_1298 hypothetical protein; hypothetical protein 955325..957301 Polaromonas naphthalenivorans CJ2 4688934 YP_981143.1 CDS Pnap_0905 NC_008781.1 957301 958455 D KEGG: pol:Bpro_1299 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; A/G-specific adenine glycosylase 957301..958455 Polaromonas naphthalenivorans CJ2 4689165 YP_981144.1 CDS Pnap_0906 NC_008781.1 958456 959313 R PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: pol:Bpro_1300 uncharacterised P-loop ATPase protein UPF0042; hypothetical protein complement(958456..959313) Polaromonas naphthalenivorans CJ2 4689438 YP_981145.1 CDS Pnap_0907 NC_008781.1 959468 961117 R KEGG: pol:Bpro_1301 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; SMART: AAA ATPase; DNA repair protein RecN complement(959468..961117) Polaromonas naphthalenivorans CJ2 4689432 YP_981146.1 CDS ppnK NC_008781.1 961152 962027 R catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein complement(961152..962027) Polaromonas naphthalenivorans CJ2 4689510 YP_981147.1 CDS hrcA NC_008781.1 962077 963090 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 962077..963090 Polaromonas naphthalenivorans CJ2 4689550 YP_981148.1 CDS ntpA NC_008781.1 963319 963783 D converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 963319..963783 Polaromonas naphthalenivorans CJ2 4686626 YP_981149.1 CDS Pnap_0911 NC_008781.1 963818 965137 D PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_0868 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 963818..965137 Polaromonas naphthalenivorans CJ2 4689610 YP_981150.1 CDS Pnap_0912 NC_008781.1 965291 966013 D PFAM: GTP cyclohydrolase I; KEGG: pol:Bpro_0869 GTP cyclohydrolase I; GTP cyclohydrolase I 965291..966013 Polaromonas naphthalenivorans CJ2 4689557 YP_981151.1 CDS Pnap_0913 NC_008781.1 966018 966440 D PFAM: BLUF domain protein; KEGG: pol:Bpro_0870 sensors of blue-light using FAD; BLUF domain-containing protein 966018..966440 Polaromonas naphthalenivorans CJ2 4689551 YP_981152.1 CDS Pnap_0914 NC_008781.1 966504 967343 D KEGG: pol:Bpro_0871 hypothetical protein; hypothetical protein 966504..967343 Polaromonas naphthalenivorans CJ2 4689594 YP_981153.1 CDS Pnap_0915 NC_008781.1 967696 968193 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0874 transport-associated; transporter 967696..968193 Polaromonas naphthalenivorans CJ2 4689558 YP_981154.1 CDS Pnap_0916 NC_008781.1 968340 968654 R PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0875 transport-associated; transporter complement(968340..968654) Polaromonas naphthalenivorans CJ2 4689595 YP_981155.1 CDS Pnap_0917 NC_008781.1 968836 969285 R KEGG: pol:Bpro_0876 hypothetical protein; hypothetical protein complement(968836..969285) Polaromonas naphthalenivorans CJ2 4689620 YP_981156.1 CDS Pnap_0918 NC_008781.1 969312 969677 R KEGG: pol:Bpro_0877 hypothetical protein; hypothetical protein complement(969312..969677) Polaromonas naphthalenivorans CJ2 4689574 YP_981157.1 CDS Pnap_0919 NC_008781.1 969747 970151 R KEGG: pol:Bpro_0878 hypothetical protein; hypothetical protein complement(969747..970151) Polaromonas naphthalenivorans CJ2 4689632 YP_981158.1 CDS Pnap_0920 NC_008781.1 970228 970392 R PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0879 protein of unknown function DUF1328; hypothetical protein complement(970228..970392) Polaromonas naphthalenivorans CJ2 4689656 YP_981159.1 CDS Pnap_0921 NC_008781.1 970615 971955 R PFAM: ATP-binding region, ATPase domain protein domain protein; CHASE3 domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_0880 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase complement(970615..971955) Polaromonas naphthalenivorans CJ2 4690063 YP_981160.1 CDS Pnap_0922 NC_008781.1 972091 972723 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_0881 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 972091..972723 Polaromonas naphthalenivorans CJ2 4689648 YP_981161.1 CDS Pnap_0923 NC_008781.1 972854 973252 R PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(972854..973252) Polaromonas naphthalenivorans CJ2 4689658 YP_981162.1 CDS Pnap_0924 NC_008781.1 973616 975628 D PFAM: AsmA family protein; KEGG: pol:Bpro_0883 AsmA; AsmA family protein 973616..975628 Polaromonas naphthalenivorans CJ2 4689628 YP_981163.1 CDS Pnap_0925 NC_008781.1 975630 976430 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pol:Bpro_0884 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD-binding protein complement(975630..976430) Polaromonas naphthalenivorans CJ2 4689659 YP_981164.1 CDS Pnap_0926 NC_008781.1 976537 977976 R KEGG: pol:Bpro_0885 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(976537..977976) Polaromonas naphthalenivorans CJ2 4690092 YP_981165.1 CDS Pnap_0927 NC_008781.1 978227 978979 R KEGG: pol:Bpro_0886 phosphoglycerate mutase 1 family; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(978227..978979) Polaromonas naphthalenivorans CJ2 4690171 YP_981166.1 CDS Pnap_0928 NC_008781.1 979125 979511 D PFAM: Rhodanese domain protein; KEGG: pol:Bpro_0887 rhodanese-like; rhodanese domain-containing protein 979125..979511 Polaromonas naphthalenivorans CJ2 4689906 YP_981167.1 CDS Pnap_0929 NC_008781.1 979631 979894 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: pol:Bpro_0888 glutaredoxin, GrxC; glutaredoxin 3 979631..979894 Polaromonas naphthalenivorans CJ2 4690148 YP_981168.1 CDS Pnap_0930 NC_008781.1 980063 980530 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 980063..980530 Polaromonas naphthalenivorans CJ2 4689660 YP_981169.1 CDS gpsA NC_008781.1 980571 981629 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 980571..981629 Polaromonas naphthalenivorans CJ2 4690204 YP_981170.1 CDS Pnap_0932 NC_008781.1 981681 982010 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_0891 cupin 2, conserved barrel; cupin complement(981681..982010) Polaromonas naphthalenivorans CJ2 4690047 YP_981171.1 CDS panC NC_008781.1 982070 982921 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(982070..982921) Polaromonas naphthalenivorans CJ2 4689781 YP_981172.1 CDS panB NC_008781.1 982964 983866 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(982964..983866) Polaromonas naphthalenivorans CJ2 4689937 YP_981173.1 CDS Pnap_0935 NC_008781.1 984155 984451 D KEGG: tbd:Tbd_2741 hypothetical protein; hypothetical protein 984155..984451 Polaromonas naphthalenivorans CJ2 4689713 YP_981174.1 CDS Pnap_0936 NC_008781.1 984496 984879 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(984496..984879) Polaromonas naphthalenivorans CJ2 4689725 YP_981175.1 CDS Pnap_0937 NC_008781.1 985054 985929 D KEGG: pol:Bpro_0902 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 985054..985929 Polaromonas naphthalenivorans CJ2 4689715 YP_981176.1 CDS Pnap_0938 NC_008781.1 985929 987062 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 985929..987062 Polaromonas naphthalenivorans CJ2 4689700 YP_981177.1 CDS Pnap_0939 NC_008781.1 987194 988969 D TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: pol:Bpro_0904 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I 987194..988969 Polaromonas naphthalenivorans CJ2 4689708 YP_981178.1 CDS Pnap_0940 NC_008781.1 989024 989569 R TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: bxe:Bxe_A4178 protein export chaperone SecB; protein-export protein SecB complement(989024..989569) Polaromonas naphthalenivorans CJ2 4689681 YP_981179.1 CDS Pnap_0941 NC_008781.1 989587 990093 R KEGG: rme:Rmet_4107 acetone carboxylase gamma subunit; acetone carboxylase subunit gamma complement(989587..990093) Polaromonas naphthalenivorans CJ2 4689451 YP_981180.1 CDS Pnap_0942 NC_008781.1 990151 992475 R PFAM: Hydantoinase B/oxoprolinase; KEGG: dar:Daro_1019 hydantoinase B/oxoprolinase; hydantoinase B/oxoprolinase complement(990151..992475) Polaromonas naphthalenivorans CJ2 4689657 YP_981181.1 CDS Pnap_0943 NC_008781.1 992487 994634 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: reu:Reut_C6172 hydantoinase/oxoprolinase:hydantoinaseoxoprolina se, N-terminal; hydantoinase/oxoprolinase complement(992487..994634) Polaromonas naphthalenivorans CJ2 4690164 YP_981182.1 CDS Pnap_0944 NC_008781.1 995002 997023 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: eba:ebA4722 sigma-54 dependent transcriptional activator; Fis family GAF modulated sigma54 specific transcriptional regulator 995002..997023 Polaromonas naphthalenivorans CJ2 4689705 YP_981183.1 CDS Pnap_0945 NC_008781.1 997184 997831 R PFAM: DTW domain containing protein; KEGG: pfo:Pfl_1459 DTW; DTW domain-containing protein complement(997184..997831) Polaromonas naphthalenivorans CJ2 4689406 YP_981184.1 CDS Pnap_0946 NC_008781.1 997949 999607 D KEGG: reu:Reut_B4925 malonate decarboxylase alpha subunit; malonate decarboxylase subunit alpha 997949..999607 Polaromonas naphthalenivorans CJ2 4689122 YP_981185.1 CDS Pnap_0947 NC_008781.1 999607 1000491 D PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: reu:Reut_B4926 triphosphoribosyl-dephospho-CoA synthase; triphosphoribosyl-dephospho-CoA synthase 999607..1000491 Polaromonas naphthalenivorans CJ2 4689449 YP_981186.1 CDS Pnap_0948 NC_008781.1 1000500 1000823 D acyl carrier protein of malonate decarboxylase; malonate decarboxylase subunit delta 1000500..1000823 Polaromonas naphthalenivorans CJ2 4689903 YP_981187.1 CDS Pnap_0949 NC_008781.1 1000820 1001698 D The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta 1000820..1001698 Polaromonas naphthalenivorans CJ2 4688632 YP_981188.1 CDS Pnap_0950 NC_008781.1 1001691 1002497 D PFAM: malonate decarboxylase gamma subunit; KEGG: reu:Reut_B4929 malonate decarboxylase gamma subunit; malonate decarboxylase subunit gamma 1001691..1002497 Polaromonas naphthalenivorans CJ2 4688999 YP_981189.1 CDS Pnap_0951 NC_008781.1 1002494 1003186 D Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein; phosphoribosyl-dephospho-CoA transferase 1002494..1003186 Polaromonas naphthalenivorans CJ2 4688694 YP_981190.1 CDS Pnap_0952 NC_008781.1 1003183 1004118 D PFAM: acyl transferase domain protein; KEGG: reu:Reut_B4931 acyl transferase region; acyl transferase domain-containing protein 1003183..1004118 Polaromonas naphthalenivorans CJ2 4688991 YP_981191.1 CDS Pnap_0953 NC_008781.1 1004269 1005042 R PFAM: malonate/sodium symporter MadM subunit; KEGG: pae:PA0216 probable transporter; malonate/sodium symporter subunit MadM complement(1004269..1005042) Polaromonas naphthalenivorans CJ2 4688906 YP_981192.1 CDS Pnap_0954 NC_008781.1 1005039 1005458 R PFAM: malonate transporter MadL subunit; KEGG: pae:PA0215 probable transporter; malonate transporter MadL subunit complement(1005039..1005458) Polaromonas naphthalenivorans CJ2 4688978 YP_981193.1 CDS Pnap_0955 NC_008781.1 1005642 1006556 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B1014 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1005642..1006556) Polaromonas naphthalenivorans CJ2 4688898 YP_981194.1 CDS Pnap_0956 NC_008781.1 1006731 1008308 R KEGG: pol:Bpro_0905 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; L-aspartate oxidase complement(1006731..1008308) Polaromonas naphthalenivorans CJ2 4688849 YP_981195.1 CDS Pnap_0957 NC_008781.1 1008344 1009195 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: pol:Bpro_0906 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA complement(1008344..1009195) Polaromonas naphthalenivorans CJ2 4688832 YP_981196.1 CDS Pnap_0958 NC_008781.1 1009294 1009512 R KEGG: pol:Bpro_0907 hypothetical protein; hypothetical protein complement(1009294..1009512) Polaromonas naphthalenivorans CJ2 4688695 YP_981197.1 CDS Pnap_0959 NC_008781.1 1009631 1010143 D KEGG: pol:Bpro_0908 putative lipoprotein; putative lipoprotein 1009631..1010143 Polaromonas naphthalenivorans CJ2 4688764 YP_981198.1 CDS Pnap_0960 NC_008781.1 1010210 1011880 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dar:Daro_0571 sulphate anion transporter; sulfate transporter complement(1010210..1011880) Polaromonas naphthalenivorans CJ2 4688622 YP_981199.1 CDS Pnap_0961 NC_008781.1 1012476 1014401 R PFAM: peptidase S14, ClpP; KEGG: sdn:Sden_3249 peptidase S14, ClpP; peptidase S14, ClpP complement(1012476..1014401) Polaromonas naphthalenivorans CJ2 4688816 YP_981200.1 CDS Pnap_0962 NC_008781.1 1014356 1015252 R hypothetical protein complement(1014356..1015252) Polaromonas naphthalenivorans CJ2 4688755 YP_981201.1 CDS Pnap_0963 NC_008781.1 1015611 1017158 R KEGG: pfo:Pfl_0744 hypothetical protein; hypothetical protein complement(1015611..1017158) Polaromonas naphthalenivorans CJ2 4690136 YP_981202.1 CDS Pnap_0964 NC_008781.1 1017155 1017991 R KEGG: rso:RSc2483 hypothetical protein; hypothetical protein complement(1017155..1017991) Polaromonas naphthalenivorans CJ2 4687742 YP_981203.1 CDS Pnap_0965 NC_008781.1 1017988 1018302 R hypothetical protein complement(1017988..1018302) Polaromonas naphthalenivorans CJ2 4688343 YP_981204.1 CDS Pnap_0966 NC_008781.1 1018306 1018608 R hypothetical protein complement(1018306..1018608) Polaromonas naphthalenivorans CJ2 4686283 YP_981205.1 CDS Pnap_0967 NC_008781.1 1018612 1019019 R hypothetical protein complement(1018612..1019019) Polaromonas naphthalenivorans CJ2 4688301 YP_981206.1 CDS Pnap_0968 NC_008781.1 1019035 1019367 D hypothetical protein 1019035..1019367 Polaromonas naphthalenivorans CJ2 4688319 YP_981207.1 CDS Pnap_0969 NC_008781.1 1019575 1020432 R hypothetical protein complement(1019575..1020432) Polaromonas naphthalenivorans CJ2 4688295 YP_981208.1 CDS Pnap_0970 NC_008781.1 1020439 1021659 R PFAM: phage integrase family protein; KEGG: pol:Bpro_0966 phage integrase; phage integrase family protein complement(1020439..1021659) Polaromonas naphthalenivorans CJ2 4688259 YP_981209.1 CDS Pnap_0971 NC_008781.1 1021978 1022634 R TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: pol:Bpro_1347 urease accessory protein UreG; urease accessory protein UreG complement(1021978..1022634) Polaromonas naphthalenivorans CJ2 4686835 YP_981210.1 CDS Pnap_0972 NC_008781.1 1022673 1023371 R PFAM: Urease accessory protein UreF; KEGG: pol:Bpro_1348 urease accessory protein UreF; urease accessory protein UreF complement(1022673..1023371) Polaromonas naphthalenivorans CJ2 4688275 YP_981211.1 CDS ureE NC_008781.1 1023368 1023994 R involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE complement(1023368..1023994) Polaromonas naphthalenivorans CJ2 4688412 YP_981212.1 CDS ureC NC_008781.1 1024002 1025720 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(1024002..1025720) Polaromonas naphthalenivorans CJ2 4688265 YP_981213.1 CDS ureB NC_008781.1 1025720 1026025 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(1025720..1026025) Polaromonas naphthalenivorans CJ2 4688266 YP_981214.1 CDS Pnap_0976 NC_008781.1 1026039 1026632 R PFAM: HupE/UreJ protein; KEGG: cvi:CV1191 urease accessory protein; HupE/UreJ protein complement(1026039..1026632) Polaromonas naphthalenivorans CJ2 4688250 YP_981215.1 CDS ureA NC_008781.1 1026751 1027053 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(1026751..1027053) Polaromonas naphthalenivorans CJ2 4688200 YP_981216.1 CDS Pnap_0978 NC_008781.1 1027200 1030727 D PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1353 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 1027200..1030727 Polaromonas naphthalenivorans CJ2 4688202 YP_981217.1 CDS Pnap_0979 NC_008781.1 1030720 1031730 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_1354 two component transcriptional regulator, LuxR family; response regulator receiver protein 1030720..1031730 Polaromonas naphthalenivorans CJ2 4688187 YP_981218.1 CDS Pnap_0980 NC_008781.1 1032077 1032316 D KEGG: pol:Bpro_1355 hypothetical protein; hypothetical protein 1032077..1032316 Polaromonas naphthalenivorans CJ2 4687737 YP_981219.1 CDS Pnap_0981 NC_008781.1 1032387 1032644 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1032387..1032644 Polaromonas naphthalenivorans CJ2 4688192 YP_981220.1 CDS Pnap_0982 NC_008781.1 1032714 1034072 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(1032714..1034072) Polaromonas naphthalenivorans CJ2 4688108 YP_981221.1 CDS Pnap_0983 NC_008781.1 1034297 1034581 D hypothetical protein 1034297..1034581 Polaromonas naphthalenivorans CJ2 4688036 YP_981222.1 CDS Pnap_0984 NC_008781.1 1034639 1036960 R PFAM: DEAD_2 domain protein; SMART: DEXDc2; helicase c2; KEGG: pol:Bpro_1361 helicase C2; DEAD/DEAH box helicase complement(1034639..1036960) Polaromonas naphthalenivorans CJ2 4687731 YP_981223.1 CDS Pnap_0985 NC_008781.1 1037018 1037608 R PFAM: Calcium-binding EF-hand-containing protein; KEGG: pol:Bpro_1363 putative signal transduction protein with EFhand domain; signal transduction protein complement(1037018..1037608) Polaromonas naphthalenivorans CJ2 4687556 YP_981224.1 CDS Pnap_0986 NC_008781.1 1037694 1038086 D KEGG: pol:Bpro_1377 hypothetical protein; hypothetical protein 1037694..1038086 Polaromonas naphthalenivorans CJ2 4688012 YP_981225.1 CDS Pnap_0987 NC_008781.1 1038158 1039342 D PFAM: protein of unknown function UPF0118; KEGG: rpc:RPC_2083 protein of unknown function UPF0118; hypothetical protein 1038158..1039342 Polaromonas naphthalenivorans CJ2 4687958 YP_981226.1 CDS Pnap_0988 NC_008781.1 1039564 1040067 D hypothetical protein 1039564..1040067 Polaromonas naphthalenivorans CJ2 4687655 YP_981227.1 CDS Pnap_0989 NC_008781.1 1040118 1041245 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fra:Francci3_3228 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1040118..1041245 Polaromonas naphthalenivorans CJ2 4687992 YP_981228.1 CDS Pnap_0990 NC_008781.1 1041316 1042677 D PFAM: protein of unknown function DUF107; KEGG: pol:Bpro_3548 protein of unknown function DUF107; hypothetical protein 1041316..1042677 Polaromonas naphthalenivorans CJ2 4688524 YP_981229.1 CDS Pnap_0991 NC_008781.1 1042674 1043447 D PFAM: band 7 protein; KEGG: pol:Bpro_3547 band 7 protein; hypothetical protein 1042674..1043447 Polaromonas naphthalenivorans CJ2 4687555 YP_981230.1 CDS Pnap_0992 NC_008781.1 1043487 1043795 R PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: bja:blr1249 hypothetical protein; ethyl tert-butyl ether degradation EthD complement(1043487..1043795) Polaromonas naphthalenivorans CJ2 4687549 YP_981231.1 CDS Pnap_0993 NC_008781.1 1043932 1045011 D PFAM: protein of unknown function DUF1016; KEGG: lpn:lpg1084 hypothetical protein; hypothetical protein 1043932..1045011 Polaromonas naphthalenivorans CJ2 4687536 YP_981232.1 CDS Pnap_0994 NC_008781.1 1045125 1045538 R KEGG: bxe:Bxe_A3975 transcriptional regulator, XRE family; hypothetical protein complement(1045125..1045538) Polaromonas naphthalenivorans CJ2 4686853 YP_981233.1 CDS Pnap_0995 NC_008781.1 1045609 1047618 R KEGG: tde:TDE1620 hypothetical protein; hypothetical protein complement(1045609..1047618) Polaromonas naphthalenivorans CJ2 4687351 YP_981234.1 CDS Pnap_0996 NC_008781.1 1047602 1049515 R KEGG: tde:TDE1621 predicted ATP-dependent endonuclease of the OLD family; ATP-dependent OLD family endonuclease complement(1047602..1049515) Polaromonas naphthalenivorans CJ2 4687313 YP_981235.1 CDS Pnap_0997 NC_008781.1 1049613 1050896 D KEGG: pol:Bpro_1393 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 1049613..1050896 Polaromonas naphthalenivorans CJ2 4687325 YP_981236.1 CDS Pnap_0998 NC_008781.1 1050993 1052567 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_1394 inner-membrane translocator; inner-membrane translocator 1050993..1052567 Polaromonas naphthalenivorans CJ2 4686763 YP_981237.1 CDS Pnap_0999 NC_008781.1 1052571 1053782 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_1395 inner-membrane translocator; inner-membrane translocator 1052571..1053782 Polaromonas naphthalenivorans CJ2 4687004 YP_981238.1 CDS Pnap_1000 NC_008781.1 1053779 1054657 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1396 ABC transporter related; ABC transporter-like protein 1053779..1054657 Polaromonas naphthalenivorans CJ2 4687616 YP_981239.1 CDS Pnap_1001 NC_008781.1 1054647 1054994 D KEGG: pol:Bpro_4480 hypothetical protein; hypothetical protein 1054647..1054994 Polaromonas naphthalenivorans CJ2 4686844 YP_981240.1 CDS Pnap_1002 NC_008781.1 1055157 1055852 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1397 ABC transporter related; ABC transporter-like protein 1055157..1055852 Polaromonas naphthalenivorans CJ2 4686659 YP_981241.1 CDS Pnap_1003 NC_008781.1 1055959 1056402 R KEGG: pol:Bpro_1413 hypothetical protein; hypothetical protein complement(1055959..1056402) Polaromonas naphthalenivorans CJ2 4686993 YP_981242.1 CDS Pnap_1004 NC_008781.1 1056572 1057402 R PFAM: Urease accessory protein UreD; KEGG: pol:Bpro_1414 urease accessory protein UreD; urease accessory protein UreD complement(1056572..1057402) Polaromonas naphthalenivorans CJ2 4686711 YP_981243.1 CDS Pnap_1005 NC_008781.1 1057546 1060134 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(1057546..1060134) Polaromonas naphthalenivorans CJ2 4686729 YP_981244.1 CDS Pnap_1006 NC_008781.1 1060134 1062368 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(1060134..1062368) Polaromonas naphthalenivorans CJ2 4686812 YP_981245.1 CDS Pnap_1007 NC_008781.1 1062711 1065065 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1417 ABC transporter related; ABC transporter-like protein 1062711..1065065 Polaromonas naphthalenivorans CJ2 4686710 YP_981246.1 CDS Pnap_1008 NC_008781.1 1065088 1065570 D KEGG: pol:Bpro_1418 hypothetical protein; hypothetical protein 1065088..1065570 Polaromonas naphthalenivorans CJ2 4686704 YP_981247.1 CDS Pnap_1009 NC_008781.1 1065673 1066068 D hypothetical protein 1065673..1066068 Polaromonas naphthalenivorans CJ2 4686487 YP_981248.1 CDS Pnap_1010 NC_008781.1 1066337 1068634 R NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme complement(1066337..1068634) Polaromonas naphthalenivorans CJ2 4686281 YP_981249.1 CDS Pnap_1011 NC_008781.1 1068704 1069891 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1427 twin-arginine translocation pathway signal; hypothetical protein 1068704..1069891 Polaromonas naphthalenivorans CJ2 4686347 YP_981250.1 CDS Pnap_1012 NC_008781.1 1069900 1070409 R KEGG: pol:Bpro_1428 hypothetical protein; hypothetical protein complement(1069900..1070409) Polaromonas naphthalenivorans CJ2 4686353 YP_981251.1 CDS Pnap_1013 NC_008781.1 1070453 1071436 D PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_1429 protein of unknown function DUF182; hypothetical protein 1070453..1071436 Polaromonas naphthalenivorans CJ2 4686682 YP_981252.1 CDS Pnap_1014 NC_008781.1 1071690 1072802 D KEGG: pol:Bpro_1431 putative substrate-binding periplasmic (PBP) ABC transporter protein; putative substrate-binding periplasmic (PBP) ABC transporter protein 1071690..1072802 Polaromonas naphthalenivorans CJ2 4686425 YP_981253.1 CDS Pnap_1015 NC_008781.1 1072817 1073752 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0441 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1072817..1073752) Polaromonas naphthalenivorans CJ2 4686317 YP_981254.1 CDS Pnap_1016 NC_008781.1 1073857 1074945 D KEGG: rfr:Rfer_0845 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1073857..1074945 Polaromonas naphthalenivorans CJ2 4686060 YP_981255.1 CDS Pnap_1017 NC_008781.1 1075146 1076060 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein 1075146..1076060 Polaromonas naphthalenivorans CJ2 4690124 YP_981256.1 CDS Pnap_1018 NC_008781.1 1076175 1077521 D PFAM: MOFRL domain protein; KEGG: pol:Bpro_1434 hydroxypyruvate reductase; hydroxypyruvate reductase 1076175..1077521 Polaromonas naphthalenivorans CJ2 4686141 YP_981257.1 CDS Pnap_1019 NC_008781.1 1077549 1078553 R PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0842 hypothetical protein; hypothetical protein complement(1077549..1078553) Polaromonas naphthalenivorans CJ2 4686567 YP_981258.1 CDS Pnap_1020 NC_008781.1 1078630 1079748 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: bbr:BB1109 FMN-dependent dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase complement(1078630..1079748) Polaromonas naphthalenivorans CJ2 4686194 YP_981259.1 CDS Pnap_1021 NC_008781.1 1079782 1080753 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3347 uncharacterized protein UPF0065; hypothetical protein complement(1079782..1080753) Polaromonas naphthalenivorans CJ2 4686235 YP_981260.1 CDS Pnap_1022 NC_008781.1 1080834 1082285 R PFAM: aldehyde dehydrogenase; KEGG: bja:blr6417 vanillin: NAD oxidoreductase; aldehyde dehydrogenase complement(1080834..1082285) Polaromonas naphthalenivorans CJ2 4686625 YP_981261.1 CDS Pnap_1023 NC_008781.1 1082381 1083970 R catalyzes the formation of benzaldehyde from benzoylformate; benzoylformate decarboxylase complement(1082381..1083970) Polaromonas naphthalenivorans CJ2 4686275 YP_981262.1 CDS Pnap_1024 NC_008781.1 1084087 1085004 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2491 transcriptional regulator, LysR family; LysR family transcriptional regulator 1084087..1085004 Polaromonas naphthalenivorans CJ2 4686057 YP_981263.1 CDS Pnap_1025 NC_008781.1 1085386 1085802 R KEGG: bbr:BB2499 hypothetical protein; hypothetical protein complement(1085386..1085802) Polaromonas naphthalenivorans CJ2 4689477 YP_981264.1 CDS Pnap_1026 NC_008781.1 1086041 1086853 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_2092 UbiE/COQ5 methyltransferase; type 11 methyltransferase 1086041..1086853 Polaromonas naphthalenivorans CJ2 4686708 YP_981265.1 CDS Pnap_1027 NC_008781.1 1087316 1087987 D PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_1441 transcriptional regulator, XRE family; XRE family transcriptional regulator 1087316..1087987 Polaromonas naphthalenivorans CJ2 4687796 YP_981266.1 CDS Pnap_1028 NC_008781.1 1088092 1088844 D PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: pol:Bpro_1440 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1088092..1088844 Polaromonas naphthalenivorans CJ2 4686392 YP_981267.1 CDS Pnap_1029 NC_008781.1 1088888 1089538 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1439 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 1088888..1089538 Polaromonas naphthalenivorans CJ2 4687265 YP_981268.1 CDS Pnap_1030 NC_008781.1 1089535 1090266 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1438 ABC transporter related; ABC transporter-like protein 1089535..1090266 Polaromonas naphthalenivorans CJ2 4688445 YP_981269.1 CDS Pnap_1031 NC_008781.1 1090277 1091572 D PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1437 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1090277..1091572 Polaromonas naphthalenivorans CJ2 4688735 YP_981270.1 CDS Pnap_1032 NC_008781.1 1091655 1092281 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_1916 hypothetical protein; type 11 methyltransferase complement(1091655..1092281) Polaromonas naphthalenivorans CJ2 4689918 YP_981271.1 CDS Pnap_1033 NC_008781.1 1092586 1092918 D PFAM: cytochrome c, class I; KEGG: pol:Bpro_2050 cytochrome c, class I; class I cytochrome c 1092586..1092918 Polaromonas naphthalenivorans CJ2 4689360 YP_981272.1 CDS Pnap_1034 NC_008781.1 1093000 1095399 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pol:Bpro_1480 xanthine dehydrogenase; molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase complement(1093000..1095399) Polaromonas naphthalenivorans CJ2 4688003 YP_981273.1 CDS Pnap_1035 NC_008781.1 1095396 1096916 R PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_1481 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase complement(1095396..1096916) Polaromonas naphthalenivorans CJ2 4689695 YP_981274.1 CDS Pnap_1036 NC_008781.1 1097180 1098754 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1483 ABC transporter related; ABC transporter-like protein 1097180..1098754 Polaromonas naphthalenivorans CJ2 4686906 YP_981275.1 CDS Pnap_1037 NC_008781.1 1098744 1099826 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_1484 inner-membrane translocator; inner-membrane translocator 1098744..1099826 Polaromonas naphthalenivorans CJ2 4686245 YP_981276.1 CDS Pnap_1038 NC_008781.1 1099826 1100746 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_1485 inner-membrane translocator; inner-membrane translocator 1099826..1100746 Polaromonas naphthalenivorans CJ2 4688714 YP_981277.1 CDS Pnap_1039 NC_008781.1 1100828 1101979 D PFAM: basic membrane lipoprotein; KEGG: pol:Bpro_1486 basic membrane lipoprotein; basic membrane lipoprotein 1100828..1101979 Polaromonas naphthalenivorans CJ2 4689481 YP_981278.1 CDS Pnap_1040 NC_008781.1 1102076 1103116 D catalyzes the formation of inosine from adenosine; adenosine deaminase 1102076..1103116 Polaromonas naphthalenivorans CJ2 4686552 YP_981279.1 CDS Pnap_1041 NC_008781.1 1103146 1104432 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pol:Bpro_1488 protein of unknown function DUF1228; hypothetical protein 1103146..1104432 Polaromonas naphthalenivorans CJ2 4687474 YP_981280.1 CDS Pnap_1042 NC_008781.1 1104559 1104942 D hypothetical protein 1104559..1104942 Polaromonas naphthalenivorans CJ2 4688383 YP_981281.1 CDS Pnap_1043 NC_008781.1 1104974 1105960 R KEGG: dar:Daro_3465 hypothetical protein; hypothetical protein complement(1104974..1105960) Polaromonas naphthalenivorans CJ2 4690011 YP_981282.1 CDS Pnap_1044 NC_008781.1 1106306 1107391 D PFAM: basic membrane lipoprotein; KEGG: rfr:Rfer_3296 basic membrane lipoprotein; basic membrane lipoprotein 1106306..1107391 Polaromonas naphthalenivorans CJ2 4689502 YP_981283.1 CDS Pnap_1045 NC_008781.1 1107388 1108023 D KEGG: pol:Bpro_1494 hypothetical protein; hypothetical protein 1107388..1108023 Polaromonas naphthalenivorans CJ2 4689817 YP_981284.1 CDS Pnap_1046 NC_008781.1 1108020 1108400 D PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: pol:Bpro_1495 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; putative 6-pyruvoyl tetrahydropterin synthase 1108020..1108400 Polaromonas naphthalenivorans CJ2 4688806 YP_981285.1 CDS Pnap_1047 NC_008781.1 1108427 1109719 D Catalyzes the deamination of guanine; guanine deaminase 1108427..1109719 Polaromonas naphthalenivorans CJ2 4688009 YP_981286.1 CDS Pnap_1048 NC_008781.1 1109747 1110046 R hypothetical protein complement(1109747..1110046) Polaromonas naphthalenivorans CJ2 4686087 YP_981287.1 CDS dcd NC_008781.1 1110192 1110791 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1110192..1110791 Polaromonas naphthalenivorans CJ2 4687561 YP_981288.1 CDS Pnap_1050 NC_008781.1 1110888 1111763 R KEGG: rfr:Rfer_3771 integral membrane protein; integral membrane protein complement(1110888..1111763) Polaromonas naphthalenivorans CJ2 4688770 YP_981289.1 CDS Pnap_1051 NC_008781.1 1111861 1112235 R KEGG: rpc:RPC_3825 hypothetical protein; hypothetical protein complement(1111861..1112235) Polaromonas naphthalenivorans CJ2 4689470 YP_981290.1 CDS Pnap_1052 NC_008781.1 1112279 1112647 R PFAM: zinc finger, DksA/TraR C4-type; KEGG: rfr:Rfer_0615 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(1112279..1112647) Polaromonas naphthalenivorans CJ2 4688874 YP_981291.1 CDS Pnap_1053 NC_008781.1 1112816 1113682 D KEGG: rfr:Rfer_0009 integral membrane protein; integral membrane protein 1112816..1113682 Polaromonas naphthalenivorans CJ2 4688351 YP_981292.1 CDS Pnap_1054 NC_008781.1 1113682 1113894 D KEGG: rfr:Rfer_0008 hypothetical protein; hypothetical protein 1113682..1113894 Polaromonas naphthalenivorans CJ2 4686982 YP_981293.1 CDS Pnap_1055 NC_008781.1 1113950 1114636 R KEGG: tbd:Tbd_0127 outer membrane protein; outer membrane protein complement(1113950..1114636) Polaromonas naphthalenivorans CJ2 4688364 YP_981294.1 CDS Pnap_1056 NC_008781.1 1114965 1115357 D KEGG: pol:Bpro_1510 hypothetical protein; hypothetical protein 1114965..1115357 Polaromonas naphthalenivorans CJ2 4687907 YP_981295.1 CDS Pnap_1057 NC_008781.1 1115542 1116432 D PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: rfr:Rfer_2725 protein of unknown function, zinc metallopeptidase putative; hypothetical protein 1115542..1116432 Polaromonas naphthalenivorans CJ2 4690015 YP_981296.1 CDS Pnap_1058 NC_008781.1 1116710 1117777 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcn:Bcen_3232 transposase, IS605 OrfB; IS605 family transposase OrfB complement(1116710..1117777) Polaromonas naphthalenivorans CJ2 4686146 YP_981297.1 CDS Pnap_1059 NC_008781.1 1118025 1119035 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: pol:Bpro_1892 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1118025..1119035 Polaromonas naphthalenivorans CJ2 4686529 YP_981298.1 CDS Pnap_1060 NC_008781.1 1119132 1120028 R PFAM: transglutaminase domain protein; KEGG: pol:Bpro_0068 transglutaminase-like; transglutaminase domain-containing protein complement(1119132..1120028) Polaromonas naphthalenivorans CJ2 4686222 YP_981299.1 CDS Pnap_1061 NC_008781.1 1120192 1121136 R PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpc:RPC_0967 transglutaminase-like; transglutaminase domain-containing protein complement(1120192..1121136) Polaromonas naphthalenivorans CJ2 4686898 YP_981300.1 CDS Pnap_1062 NC_008781.1 1121203 1122135 R KEGG: rba:RB2398 hypothetical protein; hypothetical protein complement(1121203..1122135) Polaromonas naphthalenivorans CJ2 4687162 YP_981301.1 CDS Pnap_1063 NC_008781.1 1122230 1123228 R PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pfl:PFL_0589 transglutaminase domain protein; transglutaminase domain-containing protein complement(1122230..1123228) Polaromonas naphthalenivorans CJ2 4689746 YP_981302.1 CDS Pnap_1064 NC_008781.1 1123225 1125777 R PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3009 protein of unknown function DUF403; hypothetical protein complement(1123225..1125777) Polaromonas naphthalenivorans CJ2 4686323 YP_981303.1 CDS Pnap_1065 NC_008781.1 1125856 1129221 R PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rru:Rru_A2558 transglutaminase-like; transglutaminase domain-containing protein complement(1125856..1129221) Polaromonas naphthalenivorans CJ2 4686650 YP_981304.1 CDS Pnap_1066 NC_008781.1 1129538 1131118 R KEGG: rfr:Rfer_3368 hypothetical protein; hypothetical protein complement(1129538..1131118) Polaromonas naphthalenivorans CJ2 4687260 YP_981305.1 CDS Pnap_1067 NC_008781.1 1131671 1132678 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(1131671..1132678) Polaromonas naphthalenivorans CJ2 4686107 YP_981306.1 CDS pepN NC_008781.1 1132725 1135472 R TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: pol:Bpro_1587 peptidase M1, alanyl aminopeptidase; aminopeptidase N complement(1132725..1135472) Polaromonas naphthalenivorans CJ2 4687527 YP_981307.1 CDS Pnap_1069 NC_008781.1 1135526 1136569 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: tbd:Tbd_0921 peptide chain release factor 2; peptide chain release factor 2 complement(1135526..1136569) Polaromonas naphthalenivorans CJ2 4687669 YP_981308.1 CDS Pnap_1070 NC_008781.1 1136720 1137928 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: psb:Psyr_2448 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal; response regulator receiver sensor signal transduction histidine kinase complement(1136720..1137928) Polaromonas naphthalenivorans CJ2 4687661 YP_981309.1 CDS Pnap_1071 NC_008781.1 1137922 1138521 R PFAM: CheB methylesterase; KEGG: pfl:PFL_3249 methylesterase, CheB-like; CheB methylesterase complement(1137922..1138521) Polaromonas naphthalenivorans CJ2 4688155 YP_981310.1 CDS Pnap_1072 NC_008781.1 1138518 1139429 R PFAM: MCP methyltransferase, CheR-type; KEGG: pfl:PFL_3250 chemotaxis protein methyltransferase, CheR-like; chemotaxis protein CheR complement(1138518..1139429) Polaromonas naphthalenivorans CJ2 4687904 YP_981311.1 CDS Pnap_1073 NC_008781.1 1139432 1142908 R PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: pfl:PFL_3251 sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase complement(1139432..1142908) Polaromonas naphthalenivorans CJ2 4686702 YP_981312.1 CDS Pnap_1074 NC_008781.1 1142985 1143926 R PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1589 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1142985..1143926) Polaromonas naphthalenivorans CJ2 4688487 YP_981313.1 CDS Pnap_1075 NC_008781.1 1144192 1144854 R PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: pol:Bpro_1591 OmpA/MotB; OmpA/MotB domain-containing protein complement(1144192..1144854) Polaromonas naphthalenivorans CJ2 4688792 YP_981314.1 CDS Pnap_1076 NC_008781.1 1145023 1146141 D PFAM: aldo/keto reductase; KEGG: pol:Bpro_1592 aldo/keto reductase; aldo/keto reductase 1145023..1146141 Polaromonas naphthalenivorans CJ2 4690016 YP_981315.1 CDS Pnap_1077 NC_008781.1 1146167 1146658 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pol:Bpro_1593 hypothetical protein; ybaK/ebsC protein 1146167..1146658 Polaromonas naphthalenivorans CJ2 4689864 YP_981316.1 CDS Pnap_1078 NC_008781.1 1146677 1147327 D PFAM: protein of unknown function DUF205; KEGG: pol:Bpro_1594 protein of unknown function DUF205; hypothetical protein 1146677..1147327 Polaromonas naphthalenivorans CJ2 4689757 YP_981317.1 CDS Pnap_1079 NC_008781.1 1147330 1147986 R KEGG: pol:Bpro_1595 hypothetical protein; hypothetical protein complement(1147330..1147986) Polaromonas naphthalenivorans CJ2 4689835 YP_981318.1 CDS Pnap_1080 NC_008781.1 1147992 1148483 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(1147992..1148483) Polaromonas naphthalenivorans CJ2 4689599 YP_981319.1 CDS Pnap_1081 NC_008781.1 1148535 1149587 D KEGG: pol:Bpro_1597 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 1148535..1149587 Polaromonas naphthalenivorans CJ2 4689274 YP_981320.1 CDS Pnap_1082 NC_008781.1 1149665 1151002 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(1149665..1151002) Polaromonas naphthalenivorans CJ2 4689212 YP_981321.1 CDS Pnap_1083 NC_008781.1 1151036 1151362 R PFAM: protein of unknown function DUF1255; KEGG: pol:Bpro_1600 protein of unknown function DUF1255; hypothetical protein complement(1151036..1151362) Polaromonas naphthalenivorans CJ2 4689418 YP_981322.1 CDS Pnap_1084 NC_008781.1 1151498 1152082 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rso:RSc2361 probable RNA polymerase sigma-e factor sigma-24 homolog transcription regulator protein; ECF subfamily RNA polymerase sigma-24 factor 1151498..1152082 Polaromonas naphthalenivorans CJ2 4689358 YP_981323.1 CDS Pnap_1085 NC_008781.1 1152079 1152861 D KEGG: rso:RSc2362 probable transmembrane protein; hypothetical protein 1152079..1152861 Polaromonas naphthalenivorans CJ2 4688596 YP_981324.1 CDS Pnap_1086 NC_008781.1 1152920 1153636 R PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_1601 17 kDa surface antigen; 17 kDa surface antigen complement(1152920..1153636) Polaromonas naphthalenivorans CJ2 4688511 YP_981325.1 CDS Pnap_1087 NC_008781.1 1153767 1154111 R PFAM: arsenate reductase and related; KEGG: pol:Bpro_1602 hypothetical protein; arsenate reductase-like protein complement(1153767..1154111) Polaromonas naphthalenivorans CJ2 4687882 YP_981326.1 CDS Pnap_1088 NC_008781.1 1154205 1155185 D KEGG: pol:Bpro_1603 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 1154205..1155185 Polaromonas naphthalenivorans CJ2 4688047 YP_981327.1 CDS Pnap_1089 NC_008781.1 1155192 1156553 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1604 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 1155192..1156553 Polaromonas naphthalenivorans CJ2 4687622 YP_981328.1 CDS Pnap_1090 NC_008781.1 1156642 1157640 D PFAM: Sporulation domain protein; KEGG: pol:Bpro_1605 sporulation related; sporulation domain-containing protein 1156642..1157640 Polaromonas naphthalenivorans CJ2 4687488 YP_981329.1 CDS Pnap_1091 NC_008781.1 1157656 1158141 D PFAM: Colicin V production protein; KEGG: pol:Bpro_1606 colicin V production protein; colicin V production protein 1157656..1158141 Polaromonas naphthalenivorans CJ2 4687815 YP_981330.1 CDS Pnap_1092 NC_008781.1 1158187 1159716 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1158187..1159716 Polaromonas naphthalenivorans CJ2 4686555 YP_981331.1 CDS Pnap_1093 NC_008781.1 1159718 1160932 D KEGG: rfr:Rfer_2682 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-succinylhomoserine sulfhydrylase 1159718..1160932 Polaromonas naphthalenivorans CJ2 4687346 YP_981332.1 CDS gltX NC_008781.1 1160929 1162323 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1160929..1162323 Polaromonas naphthalenivorans CJ2 4687397 YP_981333.1 CDS Pnap_1095 NC_008781.1 1163231 1164205 R KEGG: nha:Nham_2838 zinc finger, SWIM-type; CDGSH-type zinc finger protein complement(1163231..1164205) Polaromonas naphthalenivorans CJ2 4686648 YP_981334.1 CDS Pnap_1096 NC_008781.1 1164225 1166924 R PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nha:Nham_2839 SNF2-related; SNF2-like protein complement(1164225..1166924) Polaromonas naphthalenivorans CJ2 4687847 YP_981335.1 CDS Pnap_1097 NC_008781.1 1167002 1167424 R PFAM: Ion transport 2 domain protein,; KEGG: pol:Bpro_3379 ion transport 2; Ion transport 2 domain-containing protein complement(1167002..1167424) Polaromonas naphthalenivorans CJ2 4689448 YP_981336.1 CDS Pnap_1098 NC_008781.1 1167496 1168161 D PFAM: protein of unknown function DUF1345; KEGG: pol:Bpro_1635 protein of unknown function DUF1345; hypothetical protein 1167496..1168161 Polaromonas naphthalenivorans CJ2 4689537 YP_981337.1 CDS Pnap_1099 NC_008781.1 1168175 1169107 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_1636 protein of unknown function DUF6, transmembrane; hypothetical protein complement(1168175..1169107) Polaromonas naphthalenivorans CJ2 4689259 YP_981338.1 CDS Pnap_1100 NC_008781.1 1169125 1169649 R KEGG: pol:Bpro_1637 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylguanine DNA methyltransferase, ribonuclease domain protein; methylated-DNA--protein-cysteine methyltransferase complement(1169125..1169649) Polaromonas naphthalenivorans CJ2 4689867 YP_981339.1 CDS Pnap_1101 NC_008781.1 1169769 1171304 R PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: pol:Bpro_1638 transcriptional regulator, AraC family; Ada metal-binding domain-containing protein complement(1169769..1171304) Polaromonas naphthalenivorans CJ2 4688485 YP_981340.1 CDS Pnap_1102 NC_008781.1 1171388 1172893 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(1171388..1172893) Polaromonas naphthalenivorans CJ2 4688284 YP_981341.1 CDS Pnap_1103 NC_008781.1 1172904 1174991 R KEGG: gbe:GbCGDNIH1_2172 isoamylase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX complement(1172904..1174991) Polaromonas naphthalenivorans CJ2 4687771 YP_981342.1 CDS Pnap_1104 NC_008781.1 1174988 1177177 R KEGG: yps:YPTB3787 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain; 1,4-alpha-glucan branching protein complement(1174988..1177177) Polaromonas naphthalenivorans CJ2 4686916 YP_981343.1 CDS Pnap_1105 NC_008781.1 1177213 1179639 R KEGG: rfr:Rfer_0511 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase complement(1177213..1179639) Polaromonas naphthalenivorans CJ2 4686759 YP_981344.1 CDS Pnap_1106 NC_008781.1 1179915 1181183 D KEGG: stt:t3984 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate adenylyltransferase 1179915..1181183 Polaromonas naphthalenivorans CJ2 4686863 YP_981345.1 CDS Pnap_1107 NC_008781.1 1181180 1182664 D TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: bxe:Bxe_A2935 putative glycogen synthase; ADP-glucose type glycogen/starch synthase 1181180..1182664 Polaromonas naphthalenivorans CJ2 4687589 YP_981346.1 CDS Pnap_1108 NC_008781.1 1182815 1184197 D PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pol:Bpro_1639 phosphomannomutase; phosphomannomutase 1182815..1184197 Polaromonas naphthalenivorans CJ2 4688382 YP_981347.1 CDS Pnap_1109 NC_008781.1 1184262 1185386 D TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; KEGG: pol:Bpro_1640 lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase I 1184262..1185386 Polaromonas naphthalenivorans CJ2 4688450 YP_981348.1 CDS Pnap_1110 NC_008781.1 1185383 1186720 D PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: pol:Bpro_1641 three-deoxy-D-manno-octulosonic-acid transferase-like; 3-deoxy-D-manno-octulosonic-acid transferase 1185383..1186720 Polaromonas naphthalenivorans CJ2 4689938 YP_981349.1 CDS Pnap_1111 NC_008781.1 1186841 1187227 D PFAM: protein of unknown function DUF1486; KEGG: reu:Reut_A1634 hypothetical protein; hypothetical protein 1186841..1187227 Polaromonas naphthalenivorans CJ2 4688134 YP_981350.1 CDS Pnap_1113 NC_008781.1 1187958 1188752 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3788 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1187958..1188752 Polaromonas naphthalenivorans CJ2 4687438 YP_981351.1 CDS Pnap_1114 NC_008781.1 1188900 1189157 D hypothetical protein 1188900..1189157 Polaromonas naphthalenivorans CJ2 4690123 YP_981352.1 CDS Pnap_1115 NC_008781.1 1189234 1189602 D hypothetical protein 1189234..1189602 Polaromonas naphthalenivorans CJ2 4686086 YP_981353.1 CDS Pnap_1116 NC_008781.1 1189617 1190321 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_0167 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1189617..1190321) Polaromonas naphthalenivorans CJ2 4688034 YP_981354.1 CDS phhA NC_008781.1 1190318 1191217 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(1190318..1191217) Polaromonas naphthalenivorans CJ2 4687945 YP_981355.1 CDS Pnap_1118 NC_008781.1 1191242 1192516 R KEGG: pol:Bpro_2996 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetase complement(1191242..1192516) Polaromonas naphthalenivorans CJ2 4686994 YP_981356.1 CDS Pnap_1119 NC_008781.1 1192513 1193052 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO0680 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(1192513..1193052) Polaromonas naphthalenivorans CJ2 4687514 YP_981357.1 CDS Pnap_1120 NC_008781.1 1193049 1194131 R KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(1193049..1194131) Polaromonas naphthalenivorans CJ2 4688857 YP_981358.1 CDS Pnap_1121 NC_008781.1 1194160 1195152 R PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_C6250 hypothetical protein; hypothetical protein complement(1194160..1195152) Polaromonas naphthalenivorans CJ2 4687395 YP_981359.1 CDS Pnap_1122 NC_008781.1 1195203 1196363 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C6960 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(1195203..1196363) Polaromonas naphthalenivorans CJ2 4688831 YP_981360.1 CDS Pnap_1123 NC_008781.1 1196398 1197372 R PFAM: pyruvate carboxyltransferase; KEGG: reu:Reut_C6248 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(1196398..1197372) Polaromonas naphthalenivorans CJ2 4689431 YP_981361.1 CDS Pnap_1124 NC_008781.1 1197525 1198445 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2354 transcriptional regulator, LysR family; LysR family transcriptional regulator 1197525..1198445 Polaromonas naphthalenivorans CJ2 4688964 YP_981362.1 CDS Pnap_1125 NC_008781.1 1198616 1199128 D hypothetical protein 1198616..1199128 Polaromonas naphthalenivorans CJ2 4687505 YP_981363.1 CDS Pnap_1126 NC_008781.1 1199248 1200600 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein complement(1199248..1200600) Polaromonas naphthalenivorans CJ2 4687745 YP_981364.1 CDS Pnap_1127 NC_008781.1 1200660 1201025 R SMART: Rhodanese domain protein; KEGG: pol:Bpro_1665 rhodanese-like; rhodanese domain-containing protein complement(1200660..1201025) Polaromonas naphthalenivorans CJ2 4688015 YP_981365.1 CDS Pnap_1128 NC_008781.1 1201054 1201743 R PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; O-methyltransferase, family 3; Methyltransferase type 11; KEGG: pol:Bpro_1666 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase complement(1201054..1201743) Polaromonas naphthalenivorans CJ2 4688005 YP_981366.1 CDS Pnap_1129 NC_008781.1 1201883 1202578 R PFAM: regulatory protein, TetR; KEGG: pol:Bpro_1669 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1201883..1202578) Polaromonas naphthalenivorans CJ2 4688071 YP_981367.1 CDS Pnap_1130 NC_008781.1 1202668 1204002 R PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_3421 glucarate dehydratase; glucarate dehydratase complement(1202668..1204002) Polaromonas naphthalenivorans CJ2 4688058 YP_981368.1 CDS Pnap_1131 NC_008781.1 1204180 1205178 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_3418 transcriptional regulator, LacI family; regulatory protein, LacI complement(1204180..1205178) Polaromonas naphthalenivorans CJ2 4688130 YP_981369.1 CDS Pnap_1132 NC_008781.1 1205264 1206043 R PFAM: protein of unknown function DUF218; KEGG: pol:Bpro_1670 protein of unknown function DUF218; hypothetical protein complement(1205264..1206043) Polaromonas naphthalenivorans CJ2 4688123 YP_981370.1 CDS Pnap_1133 NC_008781.1 1206105 1207301 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_1671 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(1206105..1207301) Polaromonas naphthalenivorans CJ2 4688757 YP_981371.1 CDS Pnap_1134 NC_008781.1 1207438 1208322 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_1672 transcriptional regulator, LysR family; LysR family transcriptional regulator 1207438..1208322 Polaromonas naphthalenivorans CJ2 4687366 YP_981372.1 CDS Pnap_1135 NC_008781.1 1208362 1208901 D KEGG: pol:Bpro_1674 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 1208362..1208901 Polaromonas naphthalenivorans CJ2 4688198 YP_981373.1 CDS Pnap_1136 NC_008781.1 1208931 1209989 R PFAM: transposase, IS4 family protein; KEGG: lpf:lpl2868 hypothetical protein; transposase, IS4 family protein complement(1208931..1209989) Polaromonas naphthalenivorans CJ2 4687885 YP_981374.1 CDS Pnap_1137 NC_008781.1 1210027 1210284 R hypothetical protein complement(1210027..1210284) Polaromonas naphthalenivorans CJ2 4688708 YP_981375.1 CDS Pnap_1138 NC_008781.1 1210656 1211672 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_5572 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(1210656..1211672) Polaromonas naphthalenivorans CJ2 4688723 YP_981376.1 CDS Pnap_1139 NC_008781.1 1211790 1212032 R KEGG: cef:CE0351 hypothetical protein; hypothetical protein complement(1211790..1212032) Polaromonas naphthalenivorans CJ2 4688208 YP_981377.1 CDS Pnap_1140 NC_008781.1 1212035 1213084 R KEGG: psp:PSPPH_4785 probable ATP-binding protein; putative ATP-binding protein complement(1212035..1213084) Polaromonas naphthalenivorans CJ2 4688227 YP_981378.1 CDS Pnap_1141 NC_008781.1 1213315 1213767 R PFAM: CBS domain containing protein; KEGG: rfr:Rfer_0389 putative signal-transduction protein with CBS domains; signal-transduction protein complement(1213315..1213767) Polaromonas naphthalenivorans CJ2 4689435 YP_981379.1 CDS Pnap_1142 NC_008781.1 1213903 1214826 R PFAM: periplasmic solute binding protein; KEGG: rfr:Rfer_2051 periplasmic solute binding protein; periplasmic solute-binding protein complement(1213903..1214826) Polaromonas naphthalenivorans CJ2 4688808 YP_981380.1 CDS Pnap_1143 NC_008781.1 1214877 1215761 R PFAM: ABC-3 protein; KEGG: rfr:Rfer_2052 ABC-3; ABC-3 protein complement(1214877..1215761) Polaromonas naphthalenivorans CJ2 4688801 YP_981381.1 CDS Pnap_1144 NC_008781.1 1215758 1216528 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2053 ABC transporter related; ABC transporter-like protein complement(1215758..1216528) Polaromonas naphthalenivorans CJ2 4688773 YP_981382.1 CDS Pnap_1145 NC_008781.1 1216802 1217308 D KEGG: pol:Bpro_1677 putative ferric uptake regulator, FUR family; ferric uptake regulator family protein 1216802..1217308 Polaromonas naphthalenivorans CJ2 4688601 YP_981383.1 CDS Pnap_1146 NC_008781.1 1217305 1217985 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1678 ABC transporter related; ABC transporter-like protein 1217305..1217985 Polaromonas naphthalenivorans CJ2 4688608 YP_981384.1 CDS Pnap_1147 NC_008781.1 1217982 1219184 D PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_1679 protein of unknown function DUF214; hypothetical protein 1217982..1219184 Polaromonas naphthalenivorans CJ2 4688822 YP_981385.1 CDS Pnap_1148 NC_008781.1 1219203 1219469 D KEGG: pol:Bpro_1680 hypothetical protein; hypothetical protein 1219203..1219469 Polaromonas naphthalenivorans CJ2 4688852 YP_981386.1 CDS Pnap_1149 NC_008781.1 1219519 1220109 D KEGG: pol:Bpro_1681 hypothetical protein; hypothetical protein 1219519..1220109 Polaromonas naphthalenivorans CJ2 4689402 YP_981387.1 CDS Pnap_1150 NC_008781.1 1220324 1220695 D PFAM: protein of unknown function DUF486; KEGG: pol:Bpro_1685 protein of unknown function DUF486; hypothetical protein 1220324..1220695 Polaromonas naphthalenivorans CJ2 4688894 YP_981388.1 CDS Pnap_1151 NC_008781.1 1220887 1221534 D PFAM: protein of unknown function DUF47; KEGG: pol:Bpro_1686 protein of unknown function DUF47; hypothetical protein 1220887..1221534 Polaromonas naphthalenivorans CJ2 4688904 YP_981389.1 CDS Pnap_1152 NC_008781.1 1221567 1222577 D PFAM: phosphate transporter; KEGG: pol:Bpro_1687 phosphate transporter; phosphate transporter 1221567..1222577 Polaromonas naphthalenivorans CJ2 4689369 YP_981390.1 CDS Pnap_1153 NC_008781.1 1222658 1225231 R PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_3224 protein of unknown function DUF214; hypothetical protein complement(1222658..1225231) Polaromonas naphthalenivorans CJ2 4688676 YP_981391.1 CDS Pnap_1154 NC_008781.1 1225252 1225899 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3214 ABC transporter related; ABC transporter-like protein complement(1225252..1225899) Polaromonas naphthalenivorans CJ2 4687881 YP_981392.1 CDS miaA NC_008781.1 1225896 1226891 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1225896..1226891) Polaromonas naphthalenivorans CJ2 4689422 YP_981393.1 CDS Pnap_1156 NC_008781.1 1226937 1227821 R KEGG: pol:Bpro_3210 hypothetical protein; hypothetical protein complement(1226937..1227821) Polaromonas naphthalenivorans CJ2 4689492 YP_981394.1 CDS Pnap_1157 NC_008781.1 1227891 1229825 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: pol:Bpro_3209 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL complement(1227891..1229825) Polaromonas naphthalenivorans CJ2 4689533 YP_981395.1 CDS Pnap_1158 NC_008781.1 1229927 1230823 R KEGG: pol:Bpro_4520 conserved hypothetical protein; putative signal peptide; putative signal peptide complement(1229927..1230823) Polaromonas naphthalenivorans CJ2 4689199 YP_981396.1 CDS Pnap_1159 NC_008781.1 1230875 1232059 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(1230875..1232059) Polaromonas naphthalenivorans CJ2 4689508 YP_981397.1 CDS Pnap_1160 NC_008781.1 1232102 1233364 R PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: mag:amb2306 putative GTPase; cobalamin synthesis protein, P47K complement(1232102..1233364) Polaromonas naphthalenivorans CJ2 4689512 YP_981398.1 CDS Pnap_1161 NC_008781.1 1233379 1234257 R KEGG: bur:Bcep18194_B1208 hypothetical protein; hypothetical protein complement(1233379..1234257) Polaromonas naphthalenivorans CJ2 4689239 YP_981399.1 CDS Pnap_1162 NC_008781.1 1234254 1236530 R PFAM: Hydantoinase B/oxoprolinase; KEGG: fra:Francci3_2242 hydantoinase B/oxoprolinase; hydantoinase B/oxoprolinase complement(1234254..1236530) Polaromonas naphthalenivorans CJ2 4689168 YP_981400.1 CDS Pnap_1163 NC_008781.1 1236575 1238710 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bur:Bcep18194_B1206 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase complement(1236575..1238710) Polaromonas naphthalenivorans CJ2 4689087 YP_981401.1 CDS Pnap_1164 NC_008781.1 1238741 1239142 R KEGG: bur:Bcep18194_B1205 acetone carboxylase gamma subunit-like; acetone carboxylase subunit gamma-like protein complement(1238741..1239142) Polaromonas naphthalenivorans CJ2 4689538 YP_981402.1 CDS Pnap_1165 NC_008781.1 1239148 1241085 R PFAM: Hydantoinase/oxoprolinase; KEGG: bur:Bcep18194_B1204 hydantoinase/oxoprolinase; 5-oxoprolinase complement(1239148..1241085) Polaromonas naphthalenivorans CJ2 4689544 YP_981403.1 CDS Pnap_1166 NC_008781.1 1241752 1243779 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: eba:ebA4722 sigma-54 dependent transcriptional activator; Fis family GAF modulated sigma54 specific transcriptional regulator complement(1241752..1243779) Polaromonas naphthalenivorans CJ2 4689260 YP_981404.1 CDS Pnap_1167 NC_008781.1 1244190 1244849 D KEGG: pol:Bpro_3208 DedA protein (DSG-1 protein); DedA protein 1244190..1244849 Polaromonas naphthalenivorans CJ2 4690096 YP_981405.1 CDS Pnap_1168 NC_008781.1 1244869 1246719 D PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr1288 probable long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 1244869..1246719 Polaromonas naphthalenivorans CJ2 4690101 YP_981406.1 CDS Pnap_1169 NC_008781.1 1246875 1247132 R PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3200 17 kDa surface antigen; 17 kDa surface antigen complement(1246875..1247132) Polaromonas naphthalenivorans CJ2 4689301 YP_981407.1 CDS Pnap_1170 NC_008781.1 1247259 1248818 R PFAM: cell wall hydrolase/autolysin; KEGG: pol:Bpro_3199 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(1247259..1248818) Polaromonas naphthalenivorans CJ2 4690081 YP_981408.1 CDS Pnap_1171 NC_008781.1 1248815 1249333 R PFAM: protein of unknown function UPF0079; KEGG: pol:Bpro_3198 protein of unknown function UPF0079; hypothetical protein complement(1248815..1249333) Polaromonas naphthalenivorans CJ2 4690024 YP_981409.1 CDS Pnap_1172 NC_008781.1 1249400 1250398 D TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pol:Bpro_3197 4Fe-4S cluster binding; putative iron-sulfur cluster-binding protein 1249400..1250398 Polaromonas naphthalenivorans CJ2 4690115 YP_981410.1 CDS Pnap_1173 NC_008781.1 1250507 1251499 R PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_3195 auxin efflux carrier; auxin efflux carrier complement(1250507..1251499) Polaromonas naphthalenivorans CJ2 4690134 YP_981411.1 CDS Pnap_1174 NC_008781.1 1251588 1252490 D TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pol:Bpro_3191 tyrosine recombinase XerD; tyrosine recombinase XerD 1251588..1252490 Polaromonas naphthalenivorans CJ2 4690201 YP_981412.1 CDS Pnap_1175 NC_008781.1 1252521 1253786 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_3190 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(1252521..1253786) Polaromonas naphthalenivorans CJ2 4689801 YP_981413.1 CDS Pnap_1176 NC_008781.1 1253895 1254227 R KEGG: pol:Bpro_4705 hypothetical protein; hypothetical protein complement(1253895..1254227) Polaromonas naphthalenivorans CJ2 4690166 YP_981414.1 CDS Pnap_1177 NC_008781.1 1254395 1255297 R PFAM: protein of unknown function DUF455; KEGG: pol:Bpro_3189 protein of unknown function DUF455; hypothetical protein complement(1254395..1255297) Polaromonas naphthalenivorans CJ2 4690191 YP_981415.1 CDS Pnap_1178 NC_008781.1 1255333 1255857 D KEGG: pol:Bpro_3188 transferase hexapeptide repeat; hexapaptide repeat-containing transferase 1255333..1255857 Polaromonas naphthalenivorans CJ2 4689826 YP_981416.1 CDS Pnap_1179 NC_008781.1 1256017 1256985 D PFAM: Hsp33 protein; KEGG: pol:Bpro_3187 HSP33 protein; Hsp33 protein 1256017..1256985 Polaromonas naphthalenivorans CJ2 4689934 YP_981417.1 CDS Pnap_1180 NC_008781.1 1257043 1258452 R KEGG: xfa:XF1486 hypothetical protein; hypothetical protein complement(1257043..1258452) Polaromonas naphthalenivorans CJ2 4689969 YP_981418.1 CDS Pnap_1181 NC_008781.1 1258583 1259140 R KEGG: pol:Bpro_3186 hypothetical protein; hypothetical protein complement(1258583..1259140) Polaromonas naphthalenivorans CJ2 4689962 YP_981419.1 CDS Pnap_1182 NC_008781.1 1259192 1259434 R PFAM: Septum formation initiator; KEGG: pol:Bpro_3185 septum formation initiator; septum formation initiator complement(1259192..1259434) Polaromonas naphthalenivorans CJ2 4689831 YP_981420.1 CDS eno NC_008781.1 1259486 1260772 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1259486..1260772) Polaromonas naphthalenivorans CJ2 4689856 YP_981421.1 CDS Pnap_1184 NC_008781.1 1260910 1261767 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1260910..1261767) Polaromonas naphthalenivorans CJ2 4689703 YP_981422.1 CDS pyrG NC_008781.1 1261764 1263464 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1261764..1263464) Polaromonas naphthalenivorans CJ2 4689688 YP_981423.1 CDS Pnap_1186 NC_008781.1 1263653 1264933 D TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: pol:Bpro_3180 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1263653..1264933 Polaromonas naphthalenivorans CJ2 4689676 YP_981424.1 CDS dut NC_008781.1 1265364 1265810 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1265364..1265810 Polaromonas naphthalenivorans CJ2 4687950 YP_981425.1 CDS Pnap_1189 NC_008781.1 1266020 1266580 D PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3177 17 kDa surface antigen; 17 kDa surface antigen 1266020..1266580 Polaromonas naphthalenivorans CJ2 4689674 YP_981426.1 CDS Pnap_1190 NC_008781.1 1266659 1267183 R KEGG: pol:Bpro_3176 putative fkbp-type peptidyl-prolyl cis-trans isomerase (rotamase) protein; putative fkbp-type peptidyl-prolyl cis-trans isomerase (rotamase) protein complement(1266659..1267183) Polaromonas naphthalenivorans CJ2 4689217 YP_981427.1 CDS Pnap_1191 NC_008781.1 1267198 1268439 D PFAM: Cupin 4 family protein; KEGG: pol:Bpro_3175 cupin 4; cupin 4 family protein 1267198..1268439 Polaromonas naphthalenivorans CJ2 4689773 YP_981428.1 CDS Pnap_1192 NC_008781.1 1268486 1269001 D KEGG: pol:Bpro_3174 hypothetical protein; hypothetical protein 1268486..1269001 Polaromonas naphthalenivorans CJ2 4689453 YP_981429.1 CDS Pnap_1193 NC_008781.1 1269216 1269485 D KEGG: dar:Daro_0849 hypothetical protein; hypothetical protein 1269216..1269485 Polaromonas naphthalenivorans CJ2 4689761 YP_981430.1 CDS Pnap_1194 NC_008781.1 1269563 1270336 R PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_3172 beta-lactamase-like; beta-lactamase domain-containing protein complement(1269563..1270336) Polaromonas naphthalenivorans CJ2 4689333 YP_981431.1 CDS Pnap_1195 NC_008781.1 1270377 1271537 R PFAM: NlpBDapX family lipoprotein; KEGG: pol:Bpro_3171 NlpBDapX lipoprotein; NlpB/DapX family lipoprotein complement(1270377..1271537) Polaromonas naphthalenivorans CJ2 4689760 YP_981432.1 CDS Pnap_1196 NC_008781.1 1271554 1272519 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(1271554..1272519) Polaromonas naphthalenivorans CJ2 4689764 YP_981433.1 CDS Pnap_1197 NC_008781.1 1272532 1273161 R KEGG: pol:Bpro_3169 methyltransferase type 11; type 11 methyltransferase complement(1272532..1273161) Polaromonas naphthalenivorans CJ2 4689768 YP_981434.1 CDS Pnap_1198 NC_008781.1 1273356 1274597 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3167 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1273356..1274597) Polaromonas naphthalenivorans CJ2 4689880 YP_981435.1 CDS Pnap_1199 NC_008781.1 1274752 1276731 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1274752..1276731 Polaromonas naphthalenivorans CJ2 4689927 YP_981436.1 CDS Pnap_1200 NC_008781.1 1276743 1277582 D PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_3164 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 1276743..1277582 Polaromonas naphthalenivorans CJ2 4689920 YP_981437.1 CDS Pnap_1201 NC_008781.1 1277729 1280083 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1277729..1280083 Polaromonas naphthalenivorans CJ2 4689326 YP_981438.1 CDS Pnap_1202 NC_008781.1 1280199 1282130 R KEGG: noc:Noc_1885 hypothetical protein; hypothetical protein complement(1280199..1282130) Polaromonas naphthalenivorans CJ2 4689323 YP_981439.1 CDS Pnap_1203 NC_008781.1 1282137 1285076 R PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; peptidase C14, caspase catalytic subunit p20; KEGG: noc:Noc_1884 peptidase C14, caspase catalytic subunit P20; peptidase C14, caspase catalytic subunit p20 complement(1282137..1285076) Polaromonas naphthalenivorans CJ2 4688507 YP_981440.1 CDS Pnap_1204 NC_008781.1 1285359 1285829 R PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_3162 endoribonuclease L-PSP; endoribonuclease L-PSP complement(1285359..1285829) Polaromonas naphthalenivorans CJ2 4689331 YP_981441.1 CDS Pnap_1205 NC_008781.1 1286099 1288636 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: pol:Bpro_3158 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-like competence protein ComEC/Rec2 1286099..1288636 Polaromonas naphthalenivorans CJ2 4689312 YP_981442.1 CDS Pnap_1206 NC_008781.1 1288689 1290245 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pol:Bpro_3157 protein of unknown function DUF404; hypothetical protein 1288689..1290245 Polaromonas naphthalenivorans CJ2 4689063 YP_981443.1 CDS Pnap_1207 NC_008781.1 1290248 1291210 D PFAM: protein of unknown function DUF403; KEGG: pol:Bpro_3156 protein of unknown function DUF403; hypothetical protein 1290248..1291210 Polaromonas naphthalenivorans CJ2 4689320 YP_981444.1 CDS Pnap_1208 NC_008781.1 1291248 1292066 D PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pol:Bpro_3155 transglutaminase-like; transglutaminase domain-containing protein 1291248..1292066 Polaromonas naphthalenivorans CJ2 4689325 YP_981445.1 CDS Pnap_1209 NC_008781.1 1292126 1293928 R PFAM: Alkaline phosphatase; KEGG: hch:HCH_01191 phosphodiesterase/alkaline phosphatase D; alkaline phosphatase complement(1292126..1293928) Polaromonas naphthalenivorans CJ2 4689319 YP_981446.1 CDS Pnap_1210 NC_008781.1 1294036 1295022 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbr:BB0460 zinc-binding dehydrogenase; alcohol dehydrogenase complement(1294036..1295022) Polaromonas naphthalenivorans CJ2 4689313 YP_981447.1 CDS Pnap_1211 NC_008781.1 1295249 1301224 D KEGG: tdn:Tmden_0240 conserved hypothetical protein, putative DNA helicase; putative DNA helicase 1295249..1301224 Polaromonas naphthalenivorans CJ2 4689318 YP_981448.1 CDS Pnap_1212 NC_008781.1 1301419 1301724 D TIGRFAM: prevent-host-death family protein; KEGG: rfr:Rfer_0623 prevent-host-death protein; prevent-host-death family protein 1301419..1301724 Polaromonas naphthalenivorans CJ2 4689314 YP_981449.1 CDS Pnap_1213 NC_008781.1 1301721 1302152 D PFAM: PilT protein domain protein; KEGG: rpd:RPD_1602 PilT protein-like; PilT domain-containing protein 1301721..1302152 Polaromonas naphthalenivorans CJ2 4689322 YP_981450.1 CDS Pnap_1214 NC_008781.1 1302329 1303804 D PFAM: KWG Leptospira repeat protein; KEGG: ana:all4040 unknown protein; hypothetical protein 1302329..1303804 Polaromonas naphthalenivorans CJ2 4689324 YP_981451.1 CDS Pnap_1215 NC_008781.1 1303784 1304485 R KEGG: hch:HCH_04341 hypothetical protein; hypothetical protein complement(1303784..1304485) Polaromonas naphthalenivorans CJ2 4688983 YP_981452.1 CDS Pnap_1216 NC_008781.1 1304545 1305636 R TIGRFAM: lytic murein transglycosylase B; KEGG: pol:Bpro_3149 lytic murein transglycosylase B; lytic murein transglycosylase B complement(1304545..1305636) Polaromonas naphthalenivorans CJ2 4688965 YP_981453.1 CDS Pnap_1217 NC_008781.1 1305669 1307738 R PFAM: transglutaminase domain protein; KEGG: pol:Bpro_3148 transglutaminase-like; transglutaminase domain-containing protein complement(1305669..1307738) Polaromonas naphthalenivorans CJ2 4688880 YP_981454.1 CDS Pnap_1218 NC_008781.1 1307732 1308799 R PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3147 protein of unknown function DUF58; hypothetical protein complement(1307732..1308799) Polaromonas naphthalenivorans CJ2 4689002 YP_981455.1 CDS Pnap_1219 NC_008781.1 1308780 1309712 R PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_3146 ATPase associated with various cellular activities, AAA_3; ATPase complement(1308780..1309712) Polaromonas naphthalenivorans CJ2 4688410 YP_981456.1 CDS Pnap_1220 NC_008781.1 1309742 1310695 D PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3145 histone deacetylase superfamily; histone deacetylase superfamily protein 1309742..1310695 Polaromonas naphthalenivorans CJ2 4688363 YP_981457.1 CDS Pnap_1221 NC_008781.1 1310706 1311527 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A0993 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 1310706..1311527 Polaromonas naphthalenivorans CJ2 4688804 YP_981458.1 CDS Pnap_1222 NC_008781.1 1311524 1312879 D PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_3144 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1311524..1312879 Polaromonas naphthalenivorans CJ2 4689020 YP_981459.1 CDS Pnap_1223 NC_008781.1 1313073 1313822 D PFAM: electron transfer flavoprotein beta-subunit; KEGG: pol:Bpro_3143 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 1313073..1313822 Polaromonas naphthalenivorans CJ2 4689016 YP_981460.1 CDS Pnap_1224 NC_008781.1 1313853 1314785 D PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: pol:Bpro_3142 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1313853..1314785 Polaromonas naphthalenivorans CJ2 4688251 YP_981461.1 CDS Pnap_1225 NC_008781.1 1314881 1316671 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1314881..1316671 Polaromonas naphthalenivorans CJ2 4688701 YP_981462.1 CDS Pnap_1226 NC_008781.1 1316769 1317725 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: pol:Bpro_3140 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 1316769..1317725 Polaromonas naphthalenivorans CJ2 4688697 YP_981463.1 CDS Pnap_1227 NC_008781.1 1317952 1318644 D KEGG: rfr:Rfer_3472 hypothetical protein; hypothetical protein 1317952..1318644 Polaromonas naphthalenivorans CJ2 4689101 YP_981464.1 CDS Pnap_1228 NC_008781.1 1318679 1320388 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pol:Bpro_3130 sulfatase; sulfatase complement(1318679..1320388) Polaromonas naphthalenivorans CJ2 4688702 YP_981465.1 CDS Pnap_1229 NC_008781.1 1320425 1321285 R PFAM: putative esterase; KEGG: rfr:Rfer_0122 carboxylesterase; carboxylesterase complement(1320425..1321285) Polaromonas naphthalenivorans CJ2 4688699 YP_981466.1 CDS Pnap_1230 NC_008781.1 1321348 1322454 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_3129 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(1321348..1322454) Polaromonas naphthalenivorans CJ2 4688703 YP_981467.1 CDS Pnap_1231 NC_008781.1 1322569 1322985 R PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_2006 RNA-binding S4; RNA-binding S4 domain-containing protein complement(1322569..1322985) Polaromonas naphthalenivorans CJ2 4688700 YP_981468.1 CDS Pnap_1232 NC_008781.1 1322986 1324425 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: pol:Bpro_2007 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1322986..1324425) Polaromonas naphthalenivorans CJ2 4688501 YP_981469.1 CDS Pnap_1233 NC_008781.1 1324422 1325114 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2008 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(1324422..1325114) Polaromonas naphthalenivorans CJ2 4689137 YP_981470.1 CDS Pnap_1234 NC_008781.1 1325213 1326172 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2009 uncharacterized protein UPF0065; hypothetical protein 1325213..1326172 Polaromonas naphthalenivorans CJ2 4688448 YP_981471.1 CDS Pnap_1235 NC_008781.1 1326378 1326890 D KEGG: pol:Bpro_2010 hypothetical protein; hypothetical protein 1326378..1326890 Polaromonas naphthalenivorans CJ2 4688306 YP_981472.1 CDS Pnap_1236 NC_008781.1 1326881 1328404 D PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane; hypothetical protein 1326881..1328404 Polaromonas naphthalenivorans CJ2 4688310 YP_981473.1 CDS Pnap_1237 NC_008781.1 1328445 1329458 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2012 twin-arginine translocation pathway signal; hypothetical protein 1328445..1329458 Polaromonas naphthalenivorans CJ2 4688274 YP_981474.1 CDS Pnap_1238 NC_008781.1 1329584 1331041 D PFAM: Fibronectin, type III domain protein; KEGG: cvi:CV0172 poly (3-hydroxybutyrate) depolymerase; fibronectin I domain-containing protein 1329584..1331041 Polaromonas naphthalenivorans CJ2 4688290 YP_981475.1 CDS Pnap_1239 NC_008781.1 1331208 1331666 D KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein 1331208..1331666 Polaromonas naphthalenivorans CJ2 4688279 YP_981476.1 CDS Pnap_1240 NC_008781.1 1331686 1332162 D KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 1331686..1332162 Polaromonas naphthalenivorans CJ2 4687836 YP_981477.1 CDS Pnap_1241 NC_008781.1 1332170 1332952 R PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR; KEGG: pol:Bpro_3536 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1332170..1332952) Polaromonas naphthalenivorans CJ2 4688255 YP_981478.1 CDS Pnap_1242 NC_008781.1 1333169 1334113 D PFAM: UbiA prenyltransferase; KEGG: eba:ebA3963 predicted 1,4-dihydroxy-2-naphthoate octaprenyltransferase; UbiA prenyltransferase 1333169..1334113 Polaromonas naphthalenivorans CJ2 4687883 YP_981479.1 CDS Pnap_1243 NC_008781.1 1334134 1334640 R TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bxe:Bxe_C0962 hypothetical protein; hemerythrin-like metal-binding protein complement(1334134..1334640) Polaromonas naphthalenivorans CJ2 4688237 YP_981480.1 CDS Pnap_1244 NC_008781.1 1334837 1336552 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_3520 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(1334837..1336552) Polaromonas naphthalenivorans CJ2 4687598 YP_981481.1 CDS Pnap_1245 NC_008781.1 1336892 1338553 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1336892..1338553 Polaromonas naphthalenivorans CJ2 4687674 YP_981482.1 CDS Pnap_1246 NC_008781.1 1338561 1339109 D PFAM: protein of unknown function DUF1415; KEGG: pol:Bpro_3518 protein of unknown function DUF1415; hypothetical protein 1338561..1339109 Polaromonas naphthalenivorans CJ2 4688332 YP_981483.1 CDS Pnap_1247 NC_008781.1 1339204 1341552 D KEGG: rfr:Rfer_2170 hypothetical protein; hypothetical protein 1339204..1341552 Polaromonas naphthalenivorans CJ2 4688322 YP_981484.1 CDS Pnap_1248 NC_008781.1 1341556 1342833 R KEGG: pol:Bpro_2111 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(1341556..1342833) Polaromonas naphthalenivorans CJ2 4687975 YP_981485.1 CDS Pnap_1249 NC_008781.1 1342830 1345526 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_4157 ATPase, E1-E2 type; HAD superfamily P-type ATPase complement(1342830..1345526) Polaromonas naphthalenivorans CJ2 4688338 YP_981486.1 CDS Pnap_1250 NC_008781.1 1345602 1346939 R KEGG: pol:Bpro_3507 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein complement(1345602..1346939) Polaromonas naphthalenivorans CJ2 4688334 YP_981487.1 CDS Pnap_1251 NC_008781.1 1347175 1347636 D hypothetical protein 1347175..1347636 Polaromonas naphthalenivorans CJ2 4688330 YP_981488.1 CDS Pnap_1252 NC_008781.1 1347800 1348213 D KEGG: rfr:Rfer_0421 hypothetical protein; hypothetical protein 1347800..1348213 Polaromonas naphthalenivorans CJ2 4688326 YP_981489.1 CDS Pnap_1253 NC_008781.1 1348227 1348487 D KEGG: pol:Bpro_1174 hypothetical protein; hypothetical protein 1348227..1348487 Polaromonas naphthalenivorans CJ2 4688331 YP_981490.1 CDS Pnap_1254 NC_008781.1 1348593 1348883 D KEGG: pol:Bpro_1175 hypothetical protein; hypothetical protein 1348593..1348883 Polaromonas naphthalenivorans CJ2 4687696 YP_981491.1 CDS Pnap_1255 NC_008781.1 1348880 1349530 D PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pol:Bpro_1176 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 1348880..1349530 Polaromonas naphthalenivorans CJ2 4688327 YP_981492.1 CDS Pnap_1256 NC_008781.1 1349714 1350340 D hypothetical protein 1349714..1350340 Polaromonas naphthalenivorans CJ2 4688323 YP_981493.1 CDS Pnap_1257 NC_008781.1 1350388 1350813 D KEGG: pol:Bpro_1181 hypothetical protein; hypothetical protein 1350388..1350813 Polaromonas naphthalenivorans CJ2 4688467 YP_981494.1 CDS Pnap_1258 NC_008781.1 1350838 1353174 D KEGG: rfr:Rfer_0418 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 1350838..1353174 Polaromonas naphthalenivorans CJ2 4687593 YP_981495.1 CDS Pnap_1259 NC_008781.1 1353205 1353672 R PFAM: protein of unknown function DUF411; KEGG: pol:Bpro_3488 protein of unknown function DUF411; hypothetical protein complement(1353205..1353672) Polaromonas naphthalenivorans CJ2 4688375 YP_981496.1 CDS Pnap_1260 NC_008781.1 1353695 1354513 R PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain; blue (type1) copper domain-containing protein complement(1353695..1354513) Polaromonas naphthalenivorans CJ2 4689711 YP_981497.1 CDS Pnap_1261 NC_008781.1 1354551 1355942 R PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase, type 3 complement(1354551..1355942) Polaromonas naphthalenivorans CJ2 4688418 YP_981498.1 CDS Pnap_1262 NC_008781.1 1355984 1357183 R KEGG: bxe:Bxe_B2295 putative outer membrane efflux protein involved in copper resistance; putative outer membrane efflux protein involved in copper resistance complement(1355984..1357183) Polaromonas naphthalenivorans CJ2 4687932 YP_981499.1 CDS Pnap_1263 NC_008781.1 1357192 1357521 R hypothetical protein complement(1357192..1357521) Polaromonas naphthalenivorans CJ2 4687938 YP_981500.1 CDS Pnap_1264 NC_008781.1 1357581 1358105 D hypothetical protein 1357581..1358105 Polaromonas naphthalenivorans CJ2 4687936 YP_981501.1 CDS Pnap_1265 NC_008781.1 1358230 1358766 D KEGG: pol:Bpro_0179 hypothetical protein; hypothetical protein 1358230..1358766 Polaromonas naphthalenivorans CJ2 4687931 YP_981502.1 CDS Pnap_1266 NC_008781.1 1358805 1359422 D hypothetical protein 1358805..1359422 Polaromonas naphthalenivorans CJ2 4687930 YP_981503.1 CDS Pnap_1267 NC_008781.1 1359554 1360471 D PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: reu:Reut_A2791 ion transport protein; Ion transport protein 1359554..1360471 Polaromonas naphthalenivorans CJ2 4687929 YP_981504.1 CDS Pnap_1268 NC_008781.1 1360492 1361049 R PFAM: YaeQ family protein; KEGG: pol:Bpro_3468 YaeQ; YaeQ family protein complement(1360492..1361049) Polaromonas naphthalenivorans CJ2 4690082 YP_981505.1 CDS Pnap_1269 NC_008781.1 1361153 1362544 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1361153..1362544) Polaromonas naphthalenivorans CJ2 4687569 YP_981506.1 CDS Pnap_1270 NC_008781.1 1362949 1363338 D KEGG: pol:Bpro_3461 hypothetical protein; hypothetical protein 1362949..1363338 Polaromonas naphthalenivorans CJ2 4687517 YP_981507.1 CDS Pnap_1271 NC_008781.1 1363401 1363682 D PFAM: protein of unknown function DUF427; KEGG: pol:Bpro_3460 protein of unknown function DUF427; hypothetical protein 1363401..1363682 Polaromonas naphthalenivorans CJ2 4687520 YP_981508.1 CDS Pnap_1272 NC_008781.1 1363756 1364193 D PFAM: UspA domain protein; KEGG: pol:Bpro_3459 UspA; UspA domain-containing protein 1363756..1364193 Polaromonas naphthalenivorans CJ2 4687512 YP_981509.1 CDS Pnap_1273 NC_008781.1 1364229 1364468 D PFAM: protein of unknown function DUF465; KEGG: cps:CPS_0008 hypothetical protein; hypothetical protein 1364229..1364468 Polaromonas naphthalenivorans CJ2 4687516 YP_981510.1 CDS Pnap_1274 NC_008781.1 1364672 1365589 D PFAM: protein of unknown function DUF344; KEGG: rme:Rmet_0550 protein of unknown function DUF344; hypothetical protein 1364672..1365589 Polaromonas naphthalenivorans CJ2 4687269 YP_981511.1 CDS Pnap_1275 NC_008781.1 1365597 1366352 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc1029 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1365597..1366352) Polaromonas naphthalenivorans CJ2 4686885 YP_981512.1 CDS Pnap_1276 NC_008781.1 1366393 1367094 R PFAM: pseudouridine synthase; KEGG: pol:Bpro_3457 pseudouridine synthase; pseudouridine synthase complement(1366393..1367094) Polaromonas naphthalenivorans CJ2 4686828 YP_981513.1 CDS Pnap_1277 NC_008781.1 1367091 1367408 R KEGG: pol:Bpro_3456 hypothetical protein; hypothetical protein complement(1367091..1367408) Polaromonas naphthalenivorans CJ2 4687577 YP_981514.1 CDS Pnap_1278 NC_008781.1 1367641 1368882 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB complement(1367641..1368882) Polaromonas naphthalenivorans CJ2 4687179 YP_981515.1 CDS Pnap_1279 NC_008781.1 1368905 1369321 D PFAM: transposase IS200-family protein; KEGG: hpy:HP1008 IS200 insertion sequence from SARA17; transposase IS200-family protein 1368905..1369321 Polaromonas naphthalenivorans CJ2 4687587 YP_981516.1 CDS Pnap_1280 NC_008781.1 1369397 1370695 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_3455 NADH dehydrogenase; NADH dehydrogenase complement(1369397..1370695) Polaromonas naphthalenivorans CJ2 4687588 YP_981517.1 CDS Pnap_1281 NC_008781.1 1370899 1372146 D PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_3450 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1370899..1372146 Polaromonas naphthalenivorans CJ2 4687583 YP_981518.1 CDS Pnap_1282 NC_008781.1 1372172 1373455 R PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I; class I cytochrome c complement(1372172..1373455) Polaromonas naphthalenivorans CJ2 4687586 YP_981519.1 CDS Pnap_1283 NC_008781.1 1373452 1374237 R KEGG: pol:Bpro_3448 putative cytochrome c; putative cytochrome c complement(1373452..1374237) Polaromonas naphthalenivorans CJ2 4687581 YP_981520.1 CDS Pnap_1284 NC_008781.1 1374302 1375120 R PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3438 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1374302..1375120) Polaromonas naphthalenivorans CJ2 4687689 YP_981521.1 CDS Pnap_1285 NC_008781.1 1375117 1376187 R KEGG: pol:Bpro_3437 hypothetical protein; hypothetical protein complement(1375117..1376187) Polaromonas naphthalenivorans CJ2 4687580 YP_981522.1 CDS Pnap_1286 NC_008781.1 1376267 1376578 R PFAM: ferredoxin; KEGG: pol:Bpro_3434 ferredoxin; ferredoxin complement(1376267..1376578) Polaromonas naphthalenivorans CJ2 4687691 YP_981523.1 CDS Pnap_1287 NC_008781.1 1376709 1377236 D PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_3433 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1376709..1377236 Polaromonas naphthalenivorans CJ2 4687709 YP_981524.1 CDS Pnap_1288 NC_008781.1 1377744 1378112 D KEGG: pol:Bpro_3432 hypothetical protein; hypothetical protein 1377744..1378112 Polaromonas naphthalenivorans CJ2 4687253 YP_981525.1 CDS Pnap_1289 NC_008781.1 1378230 1379165 D PFAM: protein of unknown function DUF808; KEGG: tbd:Tbd_0220 hypothetical protein; hypothetical protein 1378230..1379165 Polaromonas naphthalenivorans CJ2 4687254 YP_981526.1 CDS Pnap_1290 NC_008781.1 1379656 1380360 R PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR; KEGG: pol:Bpro_0101 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(1379656..1380360) Polaromonas naphthalenivorans CJ2 4687251 YP_981527.1 CDS Pnap_1291 NC_008781.1 1380439 1381440 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_0102 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(1380439..1381440) Polaromonas naphthalenivorans CJ2 4687256 YP_981528.1 CDS Pnap_1292 NC_008781.1 1381539 1381829 R KEGG: pol:Bpro_0106 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1381539..1381829) Polaromonas naphthalenivorans CJ2 4686803 YP_981529.1 CDS Pnap_1293 NC_008781.1 1381982 1382581 R PFAM: regulatory protein, TetR; KEGG: pol:Bpro_0107 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1381982..1382581) Polaromonas naphthalenivorans CJ2 4686742 YP_981530.1 CDS Pnap_1294 NC_008781.1 1382867 1384102 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB 1382867..1384102 Polaromonas naphthalenivorans CJ2 4686881 YP_981531.1 CDS Pnap_1295 NC_008781.1 1384141 1385163 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3431 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1384141..1385163) Polaromonas naphthalenivorans CJ2 4686718 YP_981532.1 CDS Pnap_1296 NC_008781.1 1385343 1386254 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pol:Bpro_3430 alpha/beta hydrolase fold-3; alpha/beta hydrolase domain-containing protein 1385343..1386254 Polaromonas naphthalenivorans CJ2 4686740 YP_981533.1 CDS Pnap_1297 NC_008781.1 1386306 1386755 D KEGG: pol:Bpro_3429 secretion protein HlyD; secretion protein HlyD 1386306..1386755 Polaromonas naphthalenivorans CJ2 4686699 YP_981534.1 CDS Pnap_1298 NC_008781.1 1386789 1387550 D KEGG: pol:Bpro_3429 secretion protein HlyD; secretion protein HlyD 1386789..1387550 Polaromonas naphthalenivorans CJ2 4686637 YP_981535.1 CDS Pnap_1299 NC_008781.1 1387583 1390828 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_3428 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1387583..1390828 Polaromonas naphthalenivorans CJ2 4686477 YP_981536.1 CDS Pnap_1300 NC_008781.1 1390870 1392276 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3427 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 1390870..1392276 Polaromonas naphthalenivorans CJ2 4686562 YP_981537.1 CDS Pnap_1301 NC_008781.1 1392448 1393701 D PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: pol:Bpro_3426 methyltransferase small; methyltransferase small 1392448..1393701 Polaromonas naphthalenivorans CJ2 4686326 YP_981538.1 CDS Pnap_1302 NC_008781.1 1393739 1394695 D PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_3425 dihydrouridine synthase, DuS; dihydrouridine synthase 1393739..1394695 Polaromonas naphthalenivorans CJ2 4686417 YP_981539.1 CDS Pnap_1303 NC_008781.1 1394839 1395348 D KEGG: pol:Bpro_3410 hypothetical protein; hypothetical protein 1394839..1395348 Polaromonas naphthalenivorans CJ2 4686830 YP_981540.1 CDS Pnap_1304 NC_008781.1 1395460 1396641 R flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase complement(1395460..1396641) Polaromonas naphthalenivorans CJ2 4686825 YP_981541.1 CDS Pnap_1305 NC_008781.1 1396832 1398421 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 1396832..1398421 Polaromonas naphthalenivorans CJ2 4686819 YP_981542.1 CDS Pnap_1306 NC_008781.1 1398526 1398990 R KEGG: mlo:mlr0720 hypothetical protein; hypothetical protein complement(1398526..1398990) Polaromonas naphthalenivorans CJ2 4686951 YP_981543.1 CDS Pnap_1307 NC_008781.1 1399239 1399901 D PFAM: phospholipase/Carboxylesterase; KEGG: pol:Bpro_3402 carboxylesterase; phospholipase/carboxylesterase 1399239..1399901 Polaromonas naphthalenivorans CJ2 4686818 YP_981544.1 CDS Pnap_1308 NC_008781.1 1400006 1401589 D TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_3399 glutamate--cysteine ligase, monofunctional; glutamate--cysteine ligase 1400006..1401589 Polaromonas naphthalenivorans CJ2 4686822 YP_981545.1 CDS Pnap_1309 NC_008781.1 1401766 1402374 R KEGG: rme:Rmet_5275 intradiol ring-cleavage dioxygenase; hypothetical protein complement(1401766..1402374) Polaromonas naphthalenivorans CJ2 4686829 YP_981546.1 CDS Pnap_1310 NC_008781.1 1402652 1403143 R KEGG: hypothetical protein; hypothetical protein complement(1402652..1403143) Polaromonas naphthalenivorans CJ2 4686823 YP_981547.1 CDS Pnap_1311 NC_008781.1 1403585 1403986 R KEGG: pol:Bpro_3397 hypothetical protein; hypothetical protein complement(1403585..1403986) Polaromonas naphthalenivorans CJ2 4686827 YP_981548.1 CDS Pnap_1312 NC_008781.1 1404031 1404990 D PFAM: GTP-binding protein, HSR1-related; KEGG: pol:Bpro_3396 GTP-binding; HSR1-like GTP-binding protein 1404031..1404990 Polaromonas naphthalenivorans CJ2 4687933 YP_981549.1 CDS Pnap_1313 NC_008781.1 1405129 1405497 D KEGG: bcn:Bcen_5665 hypothetical protein; hypothetical protein 1405129..1405497 Polaromonas naphthalenivorans CJ2 4686821 YP_981550.1 CDS Pnap_1314 NC_008781.1 1405557 1406129 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: eba:ebA1694 hypothetical protein; hemerythrin HHE cation-binding domain-containing protein 1405557..1406129 Polaromonas naphthalenivorans CJ2 4687035 YP_981551.1 CDS Pnap_1315 NC_008781.1 1406308 1407024 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_0177 cyclic nucleotide-binding domain (cNMP-BD) protein; CRP/FNR family transcriptional regulator 1406308..1407024 Polaromonas naphthalenivorans CJ2 4686308 YP_981552.1 CDS Pnap_1316 NC_008781.1 1407200 1407943 D KEGG: pol:Bpro_0178 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding domain-containing protein 1407200..1407943 Polaromonas naphthalenivorans CJ2 4686891 YP_981553.1 CDS Pnap_1317 NC_008781.1 1408046 1408327 D KEGG: pol:Bpro_0179 hypothetical protein; hypothetical protein 1408046..1408327 Polaromonas naphthalenivorans CJ2 4686287 YP_981554.1 CDS Pnap_1318 NC_008781.1 1408548 1410494 D KEGG: bxe:Bxe_C1298 hypothetical protein; hypothetical protein 1408548..1410494 Polaromonas naphthalenivorans CJ2 4686312 YP_981555.1 CDS Pnap_1319 NC_008781.1 1410542 1411672 D PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: rfr:Rfer_1882 OmpA/MotB; OmpA/MotB domain-containing protein 1410542..1411672 Polaromonas naphthalenivorans CJ2 4686997 YP_981556.1 CDS Pnap_1320 NC_008781.1 1412240 1412509 D hypothetical protein 1412240..1412509 Polaromonas naphthalenivorans CJ2 4686313 YP_981557.1 CDS Pnap_1321 NC_008781.1 1412506 1414134 D TIGRFAM: transposase, IS605 OrfB family; KEGG: tte:TTE0684 hypothetical protein; IS605 family transposase OrfB 1412506..1414134 Polaromonas naphthalenivorans CJ2 4686311 YP_981558.1 CDS Pnap_1322 NC_008781.1 1414184 1414579 D KEGG: rfr:Rfer_2015 hypothetical protein; hypothetical protein 1414184..1414579 Polaromonas naphthalenivorans CJ2 4686301 YP_981559.1 CDS Pnap_1323 NC_008781.1 1414774 1415220 D PFAM: heat shock protein Hsp20; KEGG: eba:ebA2730 heat shock protein, HSP20 family; heat shock protein Hsp20 1414774..1415220 Polaromonas naphthalenivorans CJ2 4686302 YP_981560.1 CDS Pnap_1324 NC_008781.1 1415256 1415843 D PFAM: heat shock protein Hsp20; KEGG: mca:MCA1731 heat shock protein, HSP20 family; heat shock protein Hsp20 1415256..1415843 Polaromonas naphthalenivorans CJ2 4686304 YP_981561.1 CDS Pnap_1325 NC_008781.1 1415957 1416892 D KEGG: rfr:Rfer_1390 phosphoesterase, DHHA1; phosphoesterase, DHHA1 1415957..1416892 Polaromonas naphthalenivorans CJ2 4686260 YP_981562.1 CDS Pnap_1326 NC_008781.1 1417235 1418635 R KEGG: nmu:Nmul_A1998 nitrite reductase (NO-forming); TIGRFAM: nitrite reductase, copper-containing; PFAM: blue (type 1) copper domain protein; multicopper oxidase, type 2; multicopper oxidase, type 3; nitrite reductase complement(1417235..1418635) Polaromonas naphthalenivorans CJ2 4686258 YP_981563.1 CDS Pnap_1327 NC_008781.1 1418866 1419372 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tbd:Tbd_2014 hypothetical protein; BadM/Rrf2 family transcriptional regulator complement(1418866..1419372) Polaromonas naphthalenivorans CJ2 4686300 YP_981564.1 CDS Pnap_1328 NC_008781.1 1419586 1421862 D KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein 1419586..1421862 Polaromonas naphthalenivorans CJ2 4686259 YP_981565.1 CDS Pnap_1329 NC_008781.1 1421959 1422222 D KEGG: dar:Daro_2384 hypothetical protein; hypothetical protein 1421959..1422222 Polaromonas naphthalenivorans CJ2 4686307 YP_981566.1 CDS Pnap_1330 NC_008781.1 1422288 1422755 D PFAM: Invasion gene expression up-regulator, SirB; KEGG: eba:ebB180 predicted invasion gene expression up-regulator, SirB; invasion gene expression up-regulator, SirB 1422288..1422755 Polaromonas naphthalenivorans CJ2 4686255 YP_981567.1 CDS Pnap_1331 NC_008781.1 1423058 1423684 D KEGG: pol:Bpro_3378 hypothetical protein; hypothetical protein 1423058..1423684 Polaromonas naphthalenivorans CJ2 4686309 YP_981568.1 CDS Pnap_1332 NC_008781.1 1423788 1424267 R TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain; KEGG: pol:Bpro_3369 thioredoxin; thioredoxin complement(1423788..1424267) Polaromonas naphthalenivorans CJ2 4686292 YP_981569.1 CDS Pnap_1333 NC_008781.1 1424291 1424842 R PFAM: cytochrome B561; KEGG: rfr:Rfer_2023 cytochrome b561; cytochrome B561 complement(1424291..1424842) Polaromonas naphthalenivorans CJ2 4686293 YP_981570.1 CDS Pnap_1334 NC_008781.1 1425059 1425616 D KEGG: pol:Bpro_3373 putative lipoprotein; putative lipoprotein 1425059..1425616 Polaromonas naphthalenivorans CJ2 4686826 YP_981571.1 CDS Pnap_1335 NC_008781.1 1425586 1426251 R PFAM: pseudouridine synthase; KEGG: tbd:Tbd_0853 pseudouridine synthase, Rsu; pseudouridine synthase complement(1425586..1426251) Polaromonas naphthalenivorans CJ2 4687502 YP_981572.1 CDS Pnap_1336 NC_008781.1 1426285 1428165 R PFAM: Amidohydrolase 3; KEGG: pol:Bpro_4811 amidohydrolase 3; amidohydrolase 3 complement(1426285..1428165) Polaromonas naphthalenivorans CJ2 4687186 YP_981573.1 CDS Pnap_1337 NC_008781.1 1428233 1428850 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pol:Bpro_4812 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(1428233..1428850) Polaromonas naphthalenivorans CJ2 4687333 YP_981574.1 CDS Pnap_1338 NC_008781.1 1428860 1429510 R PFAM: isochorismatase hydrolase; KEGG: pol:Bpro_4813 isochorismatase hydrolase; isochorismatase hydrolase complement(1428860..1429510) Polaromonas naphthalenivorans CJ2 4687292 YP_981575.1 CDS Pnap_1339 NC_008781.1 1429632 1430534 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4814 transcriptional regulator, LysR family; LysR family transcriptional regulator 1429632..1430534 Polaromonas naphthalenivorans CJ2 4686120 YP_981576.1 CDS Pnap_1340 NC_008781.1 1430550 1431125 R PFAM: protein of unknown function DUF1211; KEGG: cvi:CV0104 hypothetical protein; hypothetical protein complement(1430550..1431125) Polaromonas naphthalenivorans CJ2 4690223 YP_981577.1 CDS Pnap_1341 NC_008781.1 1431235 1431693 R hypothetical protein complement(1431235..1431693) Polaromonas naphthalenivorans CJ2 4686066 YP_981578.1 CDS Pnap_1342 NC_008781.1 1431777 1432667 R PFAM: peptidase M23B; KEGG: bbr:BB1398 putative peptidase; peptidase M23B complement(1431777..1432667) Polaromonas naphthalenivorans CJ2 4686076 YP_981579.1 CDS Pnap_1343 NC_008781.1 1432806 1434041 R TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pca:Pcar_2388 dehydrogenases (flavoproteins)-like; geranylgeranyl reductase complement(1432806..1434041) Polaromonas naphthalenivorans CJ2 4686374 YP_981580.1 CDS Pnap_1344 NC_008781.1 1434192 1434410 R KEGG: pol:Bpro_3354 hypothetical protein; hypothetical protein complement(1434192..1434410) Polaromonas naphthalenivorans CJ2 4686444 YP_981581.1 CDS Pnap_1345 NC_008781.1 1434642 1434809 R KEGG: pol:Bpro_5352 DNA polymerase, beta-like region; DNA polymerase, beta-like region complement(1434642..1434809) Polaromonas naphthalenivorans CJ2 4686401 YP_981582.1 CDS Pnap_1346 NC_008781.1 1435252 1435461 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cold shock domain family protein; cold-shock DNA-binding domain-containing protein complement(1435252..1435461) Polaromonas naphthalenivorans CJ2 4686393 YP_981583.1 CDS Pnap_1347 NC_008781.1 1435451 1436080 R KEGG: retron reverse transcriptase; retron reverse transcriptase complement(1435451..1436080) Polaromonas naphthalenivorans CJ2 4686451 YP_981584.1 CDS Pnap_1348 NC_008781.1 1436121 1436630 R KEGG: retron reverse transcriptase; retron reverse transcriptase complement(1436121..1436630) Polaromonas naphthalenivorans CJ2 4686171 YP_981585.1 CDS Pnap_1349 NC_008781.1 1437305 1437496 R KEGG: eba:p1B34 hypothetical protein; hypothetical protein complement(1437305..1437496) Polaromonas naphthalenivorans CJ2 4686525 YP_981586.1 CDS Pnap_1350 NC_008781.1 1437493 1437747 R KEGG: eba:p1B35 hypothetical protein; hypothetical protein complement(1437493..1437747) Polaromonas naphthalenivorans CJ2 4686563 YP_981587.1 CDS Pnap_1351 NC_008781.1 1437747 1439624 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(1437747..1439624) Polaromonas naphthalenivorans CJ2 4686573 YP_981588.1 CDS Pnap_1352 NC_008781.1 1439759 1440211 D KEGG: pol:Bpro_3349 hypothetical protein; hypothetical protein 1439759..1440211 Polaromonas naphthalenivorans CJ2 4686569 YP_981589.1 CDS Pnap_1353 NC_008781.1 1440339 1440929 R KEGG: hypothetical protein; hypothetical protein complement(1440339..1440929) Polaromonas naphthalenivorans CJ2 4686610 YP_981590.1 CDS Pnap_1354 NC_008781.1 1441308 1442366 D PFAM: porin, Gram-negative type; KEGG: bur:Bcep18194_A4837 outer membrane protein, (porin); porin 1441308..1442366 Polaromonas naphthalenivorans CJ2 4686618 YP_981591.1 CDS Pnap_1355 NC_008781.1 1442521 1443168 R PFAM: protein of unknown function DUF924; KEGG: pol:Bpro_3345 protein of unknown function DUF924; hypothetical protein complement(1442521..1443168) Polaromonas naphthalenivorans CJ2 4686627 YP_981592.1 CDS Pnap_1356 NC_008781.1 1443279 1444112 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1443279..1444112 Polaromonas naphthalenivorans CJ2 4686218 YP_981593.1 CDS Pnap_1357 NC_008781.1 1444121 1444972 R KEGG: pol:Bpro_3339 hypothetical protein; hypothetical protein complement(1444121..1444972) Polaromonas naphthalenivorans CJ2 4686628 YP_981594.1 CDS Pnap_1358 NC_008781.1 1445050 1445877 R PFAM: 20S proteasome, A and B subunits; KEGG: pol:Bpro_3338 20S proteasome, A and B subunits; 20S proteasome subunits A/B complement(1445050..1445877) Polaromonas naphthalenivorans CJ2 4687288 YP_981595.1 CDS Pnap_1359 NC_008781.1 1445917 1448529 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1445917..1448529) Polaromonas naphthalenivorans CJ2 4686631 YP_981596.1 CDS Pnap_1360 NC_008781.1 1448698 1449588 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_3621 protein of unknown function DUF6, transmembrane; hypothetical protein complement(1448698..1449588) Polaromonas naphthalenivorans CJ2 4687293 YP_981597.1 CDS Pnap_1361 NC_008781.1 1449679 1450593 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_3620 transcriptional regulator, LysR family; LysR family transcriptional regulator 1449679..1450593 Polaromonas naphthalenivorans CJ2 4687196 YP_981598.1 CDS Pnap_1362 NC_008781.1 1450788 1451132 D KEGG: eba:ebD75 hypothetical protein; hypothetical protein 1450788..1451132 Polaromonas naphthalenivorans CJ2 4687301 YP_981599.1 CDS Pnap_1363 NC_008781.1 1451152 1451562 D KEGG: eba:ebD76 hypothetical protein; hypothetical protein 1451152..1451562 Polaromonas naphthalenivorans CJ2 4687299 YP_981600.1 CDS Pnap_1364 NC_008781.1 1452343 1453125 D KEGG: pol:Bpro_2723 hypothetical protein; hypothetical protein 1452343..1453125 Polaromonas naphthalenivorans CJ2 4687315 YP_981601.1 CDS Pnap_1365 NC_008781.1 1453157 1455391 R PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: rme:Rmet_3187 protein of unknown function DUF893, YccS/YhfK; hypothetical protein complement(1453157..1455391) Polaromonas naphthalenivorans CJ2 4687174 YP_981602.1 CDS Pnap_1366 NC_008781.1 1455776 1456588 D PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_3310 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1455776..1456588 Polaromonas naphthalenivorans CJ2 4686581 YP_981603.1 CDS Pnap_1367 NC_008781.1 1456602 1457414 D PFAM: glycosyl transferase, family 2; KEGG: pol:Bpro_3309 glycosyl transferase, family 2; glycosyl transferase family protein 1456602..1457414 Polaromonas naphthalenivorans CJ2 4687372 YP_981604.1 CDS fabG NC_008781.1 1457411 1458148 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(1457411..1458148) Polaromonas naphthalenivorans CJ2 4687400 YP_981605.1 CDS Pnap_1369 NC_008781.1 1458145 1458600 R KEGG: pol:Bpro_3306 hypothetical protein; hypothetical protein complement(1458145..1458600) Polaromonas naphthalenivorans CJ2 4687443 YP_981606.1 CDS Pnap_1370 NC_008781.1 1458669 1459505 R KEGG: pol:Bpro_3305 hypothetical protein; hypothetical protein complement(1458669..1459505) Polaromonas naphthalenivorans CJ2 4687417 YP_981607.1 CDS Pnap_1371 NC_008781.1 1459537 1460634 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(1459537..1460634) Polaromonas naphthalenivorans CJ2 4687209 YP_981608.1 CDS Pnap_1372 NC_008781.1 1460764 1461486 R PFAM: phosphoesterase, PA-phosphatase related; KEGG: pol:Bpro_3303 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(1460764..1461486) Polaromonas naphthalenivorans CJ2 4687644 YP_981609.1 CDS Pnap_1373 NC_008781.1 1461483 1462286 R PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_3302 polysaccharide deacetylase; polysaccharide deacetylase complement(1461483..1462286) Polaromonas naphthalenivorans CJ2 4689294 YP_981610.1 CDS Pnap_1374 NC_008781.1 1462279 1464615 R KEGG: pol:Bpro_3301 hypothetical protein; hypothetical protein complement(1462279..1464615) Polaromonas naphthalenivorans CJ2 4686151 YP_981611.1 CDS Pnap_1375 NC_008781.1 1464624 1465274 R KEGG: pol:Bpro_3300 putative transmembrane protein; hypothetical protein complement(1464624..1465274) Polaromonas naphthalenivorans CJ2 4686596 YP_981612.1 CDS Pnap_1376 NC_008781.1 1465278 1466258 R PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_3299 putative lauroyl/myristoyl acyltransferase involved in LPS biosynthesis; lipid A biosynthesis acyltransferase complement(1465278..1466258) Polaromonas naphthalenivorans CJ2 4687282 YP_981613.1 CDS Pnap_1378 NC_008781.1 1467915 1468595 R KEGG: rso:RSc0433 probable transmembrane protein; hypothetical protein complement(1467915..1468595) Polaromonas naphthalenivorans CJ2 4688026 YP_981614.1 CDS Pnap_1379 NC_008781.1 1468592 1468888 R KEGG: pol:Bpro_3295 acyl carrier protein; acyl carrier protein complement(1468592..1468888) Polaromonas naphthalenivorans CJ2 4687528 YP_981615.1 CDS Pnap_1380 NC_008781.1 1468973 1469965 R PFAM: inositol monophosphatase; KEGG: pol:Bpro_3293 inositol-1(or 4)-monophosphatase; inositol-phosphate phosphatase complement(1468973..1469965) Polaromonas naphthalenivorans CJ2 4689485 YP_981616.1 CDS Pnap_1381 NC_008781.1 1470027 1470962 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_3292 RNA methyltransferase TrmH, group 1; tRNA/rRNA methyltransferase SpoU 1470027..1470962 Polaromonas naphthalenivorans CJ2 4686185 YP_981617.1 CDS Pnap_1382 NC_008781.1 1470972 1471751 D TIGRFAM: serine O-acetyltransferase; KEGG: pol:Bpro_3291 serine O-acetyltransferase; serine O-acetyltransferase 1470972..1471751 Polaromonas naphthalenivorans CJ2 4687498 YP_981618.1 CDS Pnap_1383 NC_008781.1 1471832 1472431 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: pol:Bpro_3289 molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein complement(1471832..1472431) Polaromonas naphthalenivorans CJ2 4687892 YP_981619.1 CDS Pnap_1384 NC_008781.1 1472428 1473036 R PFAM: protein of unknown function DUF615; KEGG: pol:Bpro_3288 protein of unknown function DUF615; hypothetical protein complement(1472428..1473036) Polaromonas naphthalenivorans CJ2 4689234 YP_981620.1 CDS Pnap_1385 NC_008781.1 1473043 1474452 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pol:Bpro_3287 peptidase U62, modulator of DNA gyrase; C69 family peptidase 1473043..1474452 Polaromonas naphthalenivorans CJ2 4686150 YP_981621.1 CDS Pnap_1386 NC_008781.1 1474535 1475341 D KEGG: pol:Bpro_3286 hypothetical protein; hypothetical protein 1474535..1475341 Polaromonas naphthalenivorans CJ2 4688095 YP_981622.1 CDS Pnap_1387 NC_008781.1 1475342 1475803 R PFAM: GatB/Yqey domain protein; KEGG: pol:Bpro_3285 GatB/YqeY; GatB/Yqey domain-containing protein complement(1475342..1475803) Polaromonas naphthalenivorans CJ2 4688611 YP_981623.1 CDS rpsU NC_008781.1 1475926 1476138 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1475926..1476138) Polaromonas naphthalenivorans CJ2 4689300 YP_981624.1 CDS Pnap_1389 NC_008781.1 1476254 1476355 R KEGG: pol:Bpro_3283 HI0933-like protein; hypothetical protein complement(1476254..1476355) Polaromonas naphthalenivorans CJ2 4686843 YP_981625.1 CDS Pnap_1390 NC_008781.1 1476394 1476699 D KEGG: bbr:BB3160 hypothetical protein; hypothetical protein 1476394..1476699 Polaromonas naphthalenivorans CJ2 4689964 YP_981626.1 CDS Pnap_1391 NC_008781.1 1476696 1477079 D KEGG: bbr:BB3159 hypothetical protein; hypothetical protein 1476696..1477079 Polaromonas naphthalenivorans CJ2 4686074 YP_981627.1 CDS Pnap_1392 NC_008781.1 1477185 1477403 R KEGG: csa:Csal_2436 cell divisionFtsK/SpoIIIE; cell division protein FtsK complement(1477185..1477403) Polaromonas naphthalenivorans CJ2 4690139 YP_981628.1 CDS Pnap_1393 NC_008781.1 1477520 1478557 R KEGG: xom:XOO_3993 ISXo7 transposase; ISXo7 transposase complement(1477520..1478557) Polaromonas naphthalenivorans CJ2 4686213 YP_981629.1 CDS Pnap_1394 NC_008781.1 1478823 1480103 D PFAM: transposase, IS4 family protein; KEGG: bxe:Bxe_C0019 putative transposase; transposase, IS4 family protein 1478823..1480103 Polaromonas naphthalenivorans CJ2 4686959 YP_981630.1 CDS Pnap_1395 NC_008781.1 1480308 1481375 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1480308..1481375 Polaromonas naphthalenivorans CJ2 4688961 YP_981631.1 CDS Pnap_1396 NC_008781.1 1481747 1482787 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bxe:Bxe_C0485 putative transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1481747..1482787 Polaromonas naphthalenivorans CJ2 4687783 YP_981632.1 CDS Pnap_1397 NC_008781.1 1482910 1483149 D hypothetical protein 1482910..1483149 Polaromonas naphthalenivorans CJ2 4687770 YP_981633.1 CDS Pnap_1398 NC_008781.1 1483192 1484097 R KEGG: vvu:VV20627 hypothetical protein; hypothetical protein complement(1483192..1484097) Polaromonas naphthalenivorans CJ2 4687759 YP_981634.1 CDS Pnap_1399 NC_008781.1 1484130 1484375 R hypothetical protein complement(1484130..1484375) Polaromonas naphthalenivorans CJ2 4686088 YP_981635.1 CDS Pnap_1400 NC_008781.1 1484455 1485702 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_3283 HI0933-like protein; hypothetical protein complement(1484455..1485702) Polaromonas naphthalenivorans CJ2 4686450 YP_981636.1 CDS Pnap_1401 NC_008781.1 1485847 1486839 R KEGG: pol:Bpro_3282 hypothetical protein; hypothetical protein complement(1485847..1486839) Polaromonas naphthalenivorans CJ2 4686565 YP_981637.1 CDS Pnap_1402 NC_008781.1 1486906 1487691 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_3281 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(1486906..1487691) Polaromonas naphthalenivorans CJ2 4686622 YP_981638.1 CDS Pnap_1403 NC_008781.1 1487688 1488593 R PFAM: glycosyl transferase, family 3; KEGG: pol:Bpro_3280 glycosyl transferase, family 3; glycosyl transferase family protein complement(1487688..1488593) Polaromonas naphthalenivorans CJ2 4687169 YP_981639.1 CDS Pnap_1404 NC_008781.1 1488647 1491514 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3279 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(1488647..1491514) Polaromonas naphthalenivorans CJ2 4687804 YP_981640.1 CDS Pnap_1405 NC_008781.1 1491545 1491967 R TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3278 nitrite reductase (NAD(P)H) large subunit, NirD; nitrite reductase (NAD(P)H) small subunit complement(1491545..1491967) Polaromonas naphthalenivorans CJ2 4688352 YP_981641.1 CDS Pnap_1406 NC_008781.1 1491984 1492775 R KEGG: pol:Bpro_3277 hypothetical protein; hypothetical protein complement(1491984..1492775) Polaromonas naphthalenivorans CJ2 4687791 YP_981642.1 CDS Pnap_1407 NC_008781.1 1492784 1495231 R TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rfr:Rfer_2557 nitrite reductase (NAD(P)H) large subunit, NirB; nitrite reductase (NAD(P)H) large subunit complement(1492784..1495231) Polaromonas naphthalenivorans CJ2 4687816 YP_981643.1 CDS Pnap_1408 NC_008781.1 1495430 1495678 R hypothetical protein complement(1495430..1495678) Polaromonas naphthalenivorans CJ2 4687868 YP_981644.1 CDS Pnap_1409 NC_008781.1 1495741 1496181 D PFAM: CBS domain containing protein; KEGG: bxe:Bxe_B1676 signal-transduction protein containing CBS domains; signal-transduction protein 1495741..1496181 Polaromonas naphthalenivorans CJ2 4689167 YP_981645.1 CDS Pnap_1410 NC_008781.1 1496276 1498024 D PFAM: protein kinase; protein phosphatase 2C domain protein; SMART: serine/threonine protein kinase; KEGG: pol:Bpro_3274 protein serine/threonine phosphatases; protein kinase 1496276..1498024 Polaromonas naphthalenivorans CJ2 4689211 YP_981646.1 CDS Pnap_1411 NC_008781.1 1498112 1499413 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3273 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1498112..1499413) Polaromonas naphthalenivorans CJ2 4690077 YP_981647.1 CDS Pnap_1412 NC_008781.1 1499478 1500293 R KEGG: pol:Bpro_3269 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPases C and D complement(1499478..1500293) Polaromonas naphthalenivorans CJ2 4689960 YP_981648.1 CDS Pnap_1413 NC_008781.1 1500322 1501257 R TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3268 nitrate transport permease; nitrate ABC transporter inner membrane subunit complement(1500322..1501257) Polaromonas naphthalenivorans CJ2 4689889 YP_981649.1 CDS Pnap_1414 NC_008781.1 1501304 1502548 R KEGG: pol:Bpro_3267 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein complement(1501304..1502548) Polaromonas naphthalenivorans CJ2 4689636 YP_981650.1 CDS Pnap_1415 NC_008781.1 1502889 1503521 R PFAM: ANTAR domain protein; KEGG: pol:Bpro_3266 response regulator receiver (CheY-like) and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein complement(1502889..1503521) Polaromonas naphthalenivorans CJ2 4688453 YP_981651.1 CDS Pnap_1416 NC_008781.1 1503628 1504698 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1503628..1504698 Polaromonas naphthalenivorans CJ2 4688505 YP_981652.1 CDS Pnap_1417 NC_008781.1 1504783 1506048 D KEGG: pol:Bpro_3263 putative transporter signal peptide protein; putative transporter signal peptide protein 1504783..1506048 Polaromonas naphthalenivorans CJ2 4687524 YP_981653.1 CDS Pnap_1418 NC_008781.1 1506091 1507245 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1506091..1507245 Polaromonas naphthalenivorans CJ2 4686978 YP_981654.1 CDS rpsO NC_008781.1 1507384 1507650 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1507384..1507650 Polaromonas naphthalenivorans CJ2 4687626 YP_981655.1 CDS Pnap_1420 NC_008781.1 1507927 1510038 D PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: pol:Bpro_3260 polyribonucleotide nucleotidyltransferase; polynucleotide phosphorylase/polyadenylase 1507927..1510038 Polaromonas naphthalenivorans CJ2 4687008 YP_981656.1 CDS Pnap_1421 NC_008781.1 1510116 1511102 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_3259 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 1510116..1511102 Polaromonas naphthalenivorans CJ2 4687600 YP_981657.1 CDS tpiA NC_008781.1 1511157 1511885 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1511157..1511885 Polaromonas naphthalenivorans CJ2 4689823 YP_981658.1 CDS secG NC_008781.1 1511919 1512329 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pol:Bpro_3257 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1511919..1512329 Polaromonas naphthalenivorans CJ2 4689244 YP_981659.1 CDS Pnap_1424 NC_008781.1 1512659 1513018 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: pol:Bpro_3256 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 1512659..1513018 Polaromonas naphthalenivorans CJ2 4688052 YP_981660.1 CDS Pnap_1425 NC_008781.1 1513058 1513537 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1513058..1513537 Polaromonas naphthalenivorans CJ2 4687908 YP_981661.1 CDS Pnap_1426 NC_008781.1 1513537 1514151 D KEGG: pol:Bpro_3254 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C 1513537..1514151 Polaromonas naphthalenivorans CJ2 4686118 YP_981662.1 CDS Pnap_1427 NC_008781.1 1514175 1515428 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1514175..1515428 Polaromonas naphthalenivorans CJ2 4686098 YP_981663.1 CDS Pnap_1428 NC_008781.1 1515433 1515930 D TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: pol:Bpro_3252 NADH-quinone oxidoreductase, E subunit; NADH-quinone oxidoreductase subunit E 1515433..1515930 Polaromonas naphthalenivorans CJ2 4686248 YP_981664.1 CDS Pnap_1429 NC_008781.1 1515936 1517357 D KEGG: pol:Bpro_3251 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH-quinone oxidoreductase subunit F 1515936..1517357 Polaromonas naphthalenivorans CJ2 4687245 YP_981665.1 CDS Pnap_1430 NC_008781.1 1517376 1519520 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1517376..1519520 Polaromonas naphthalenivorans CJ2 4687845 YP_981666.1 CDS Pnap_1431 NC_008781.1 1519553 1520596 D PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: pol:Bpro_3249 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 1519553..1520596 Polaromonas naphthalenivorans CJ2 4690022 YP_981667.1 CDS Pnap_1432 NC_008781.1 1520608 1521105 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1520608..1521105 Polaromonas naphthalenivorans CJ2 4689893 YP_981668.1 CDS Pnap_1433 NC_008781.1 1521150 1521797 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: pol:Bpro_3247 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 1521150..1521797 Polaromonas naphthalenivorans CJ2 4687021 YP_981669.1 CDS Pnap_1434 NC_008781.1 1521794 1522102 D PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: pol:Bpro_3246 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 1521794..1522102 Polaromonas naphthalenivorans CJ2 4688305 YP_981670.1 CDS Pnap_1435 NC_008781.1 1522111 1524135 D KEGG: pol:Bpro_3245 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1522111..1524135 Polaromonas naphthalenivorans CJ2 4689728 YP_981671.1 CDS Pnap_1436 NC_008781.1 1524167 1525642 D KEGG: pol:Bpro_3244 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1524167..1525642 Polaromonas naphthalenivorans CJ2 4690153 YP_981672.1 CDS Pnap_1437 NC_008781.1 1525662 1527164 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1525662..1527164 Polaromonas naphthalenivorans CJ2 4688588 YP_981673.1 CDS Pnap_1438 NC_008781.1 1527167 1527469 D KEGG: pol:Bpro_3242 putative transmembrane protein; hypothetical protein 1527167..1527469 Polaromonas naphthalenivorans CJ2 4688161 YP_981674.1 CDS Pnap_1439 NC_008781.1 1527466 1528080 D PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3241 NUDIX hydrolase; NUDIX hydrolase 1527466..1528080 Polaromonas naphthalenivorans CJ2 4688019 YP_981675.1 CDS Pnap_1440 NC_008781.1 1528102 1528629 D PFAM: protein of unknown function DUF1178; KEGG: pol:Bpro_3240 protein of unknown function DUF1178; hypothetical protein 1528102..1528629 Polaromonas naphthalenivorans CJ2 4686261 YP_981676.1 CDS Pnap_1441 NC_008781.1 1528701 1530020 R PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: pol:Bpro_3239 Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase complement(1528701..1530020) Polaromonas naphthalenivorans CJ2 4688078 YP_981677.1 CDS Pnap_1442 NC_008781.1 1530152 1531972 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related; ABC transporter-like protein complement(1530152..1531972) Polaromonas naphthalenivorans CJ2 4686681 YP_981678.1 CDS Pnap_1443 NC_008781.1 1532051 1532587 D PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3237 transcriptional regulator, MarR family; MarR family transcriptional regulator 1532051..1532587 Polaromonas naphthalenivorans CJ2 4687250 YP_981679.1 CDS Pnap_1444 NC_008781.1 1532655 1534169 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3236 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 1532655..1534169 Polaromonas naphthalenivorans CJ2 4688698 YP_981680.1 CDS Pnap_1445 NC_008781.1 1534247 1535581 D PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3235 secretion protein HlyD; secretion protein HlyD family protein 1534247..1535581 Polaromonas naphthalenivorans CJ2 4687772 YP_981681.1 CDS Pnap_1446 NC_008781.1 1535629 1537203 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3234 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 1535629..1537203 Polaromonas naphthalenivorans CJ2 4690098 YP_981682.1 CDS Pnap_1447 NC_008781.1 1537321 1538331 R PFAM: luciferase family protein; KEGG: dar:Daro_1097 luciferase-like; luciferase family protein complement(1537321..1538331) Polaromonas naphthalenivorans CJ2 4689623 YP_981683.1 CDS Pnap_1448 NC_008781.1 1538469 1539428 R PFAM: regulatory protein, MerR; KEGG: reu:Reut_C6238 regulatory protein, MerR; MerR family transcriptional regulator complement(1538469..1539428) Polaromonas naphthalenivorans CJ2 4686126 YP_981684.1 CDS Pnap_1449 NC_008781.1 1539680 1540984 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bur:Bcep18194_C6583 FAD dependent oxidoreductase; amine oxidase 1539680..1540984 Polaromonas naphthalenivorans CJ2 4686547 YP_981685.1 CDS Pnap_1450 NC_008781.1 1540981 1541766 D PFAM: protein of unknown function DUF1365; KEGG: cvi:CV3225 hypothetical protein; hypothetical protein 1540981..1541766 Polaromonas naphthalenivorans CJ2 4689377 YP_981686.1 CDS Pnap_1451 NC_008781.1 1541800 1543032 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_0492 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1541800..1543032 Polaromonas naphthalenivorans CJ2 4686544 YP_981687.1 CDS Pnap_1452 NC_008781.1 1543029 1543583 D KEGG: hypothetical protein; hypothetical protein 1543029..1543583 Polaromonas naphthalenivorans CJ2 4687247 YP_981688.1 CDS Pnap_1453 NC_008781.1 1543580 1544938 D KEGG: dar:Daro_0494 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1543580..1544938 Polaromonas naphthalenivorans CJ2 4687018 YP_981689.1 CDS Pnap_1454 NC_008781.1 1544935 1545471 D KEGG: dar:Daro_0495 lipoprotein, putative; putative lipoprotein 1544935..1545471 Polaromonas naphthalenivorans CJ2 4686765 YP_981690.1 CDS Pnap_1455 NC_008781.1 1545476 1546258 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dar:Daro_0496 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1545476..1546258 Polaromonas naphthalenivorans CJ2 4687257 YP_981691.1 CDS Pnap_1456 NC_008781.1 1546262 1546714 D KEGG: dar:Daro_0497 hypothetical protein; hypothetical protein 1546262..1546714 Polaromonas naphthalenivorans CJ2 4689911 YP_981692.1 CDS Pnap_1457 NC_008781.1 1546740 1547312 D PFAM: Lipocalin family protein; KEGG: xcb:XC_1682 outer membrane lipoprotein; lipocalin family protein 1546740..1547312 Polaromonas naphthalenivorans CJ2 4688278 YP_981693.1 CDS Pnap_1458 NC_008781.1 1547440 1548558 R KEGG: pol:Bpro_3228 secreted hydrolase-like; secreted hydrolase-like protein complement(1547440..1548558) Polaromonas naphthalenivorans CJ2 4689069 YP_981694.1 CDS Pnap_1459 NC_008781.1 1548560 1549018 R KEGG: pol:Bpro_1688 hypothetical protein; hypothetical protein complement(1548560..1549018) Polaromonas naphthalenivorans CJ2 4688994 YP_981695.1 CDS Pnap_1460 NC_008781.1 1549027 1549563 R PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1689 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1549027..1549563) Polaromonas naphthalenivorans CJ2 4689959 YP_981696.1 CDS Pnap_1461 NC_008781.1 1549769 1550044 D PFAM: ribosomal protein S16; KEGG: pol:Bpro_1690 ribosomal protein S16; 30S ribosomal protein S16 1549769..1550044 Polaromonas naphthalenivorans CJ2 4690162 YP_981697.1 CDS rimM NC_008781.1 1550061 1550669 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1550061..1550669 Polaromonas naphthalenivorans CJ2 4689293 YP_981698.1 CDS trmD NC_008781.1 1550737 1551519 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1550737..1551519 Polaromonas naphthalenivorans CJ2 4688844 YP_981699.1 CDS rplS NC_008781.1 1551653 1552045 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1551653..1552045 Polaromonas naphthalenivorans CJ2 4688136 YP_981700.1 CDS Pnap_1465 NC_008781.1 1552115 1552828 D PFAM: NUDIX hydrolase; KEGG: pol:Bpro_1694 NUDIX hydrolase; NUDIX hydrolase 1552115..1552828 Polaromonas naphthalenivorans CJ2 4687997 YP_981701.1 CDS Pnap_1466 NC_008781.1 1552901 1553920 D KEGG: pol:Bpro_1695 hypothetical protein; hypothetical protein 1552901..1553920 Polaromonas naphthalenivorans CJ2 4686689 YP_981702.1 CDS Pnap_1467 NC_008781.1 1553946 1554854 R TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: pol:Bpro_1697 GTPase EngC; ribosome small subunit-dependent GTPase A complement(1553946..1554854) Polaromonas naphthalenivorans CJ2 4686513 YP_981703.1 CDS Pnap_1468 NC_008781.1 1554914 1555234 R PFAM: transcriptional coactivator/pterin dehydratase; KEGG: pol:Bpro_1698 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase complement(1554914..1555234) Polaromonas naphthalenivorans CJ2 4688892 YP_981704.1 CDS Pnap_1469 NC_008781.1 1555231 1556520 R PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_1699 STE24 endopeptidase; Ste24 endopeptidase complement(1555231..1556520) Polaromonas naphthalenivorans CJ2 4686467 YP_981705.1 CDS Pnap_1470 NC_008781.1 1556556 1557119 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1556556..1557119 Polaromonas naphthalenivorans CJ2 4687478 YP_981706.1 CDS Pnap_1471 NC_008781.1 1557514 1559463 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_1701 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 1557514..1559463 Polaromonas naphthalenivorans CJ2 4688779 YP_981707.1 CDS Pnap_1472 NC_008781.1 1559559 1560536 R TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: pol:Bpro_1718 guanosine monophosphate reductase; guanosine 5'-monophosphate oxidoreductase complement(1559559..1560536) Polaromonas naphthalenivorans CJ2 4689530 YP_981708.1 CDS Pnap_1473 NC_008781.1 1560737 1561408 R KEGG: pol:Bpro_1719 hypothetical protein; hypothetical protein complement(1560737..1561408) Polaromonas naphthalenivorans CJ2 4689763 YP_981709.1 CDS Pnap_1474 NC_008781.1 1561555 1563900 D PFAM: UvrD/REP helicase; KEGG: pol:Bpro_1723 UvrD/REP helicase; UvrD/REP helicase 1561555..1563900 Polaromonas naphthalenivorans CJ2 4688981 YP_981710.1 CDS Pnap_1475 NC_008781.1 1563917 1564708 R KEGG: pol:Bpro_1726 hypothetical protein; hypothetical protein complement(1563917..1564708) Polaromonas naphthalenivorans CJ2 4686873 YP_981711.1 CDS Pnap_1476 NC_008781.1 1564748 1565698 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(1564748..1565698) Polaromonas naphthalenivorans CJ2 4686674 YP_981712.1 CDS Pnap_1477 NC_008781.1 1565735 1566133 R KEGG: pol:Bpro_1728 hypothetical protein; hypothetical protein complement(1565735..1566133) Polaromonas naphthalenivorans CJ2 4689767 YP_981713.1 CDS Pnap_1478 NC_008781.1 1566249 1569074 D KEGG: pol:Bpro_1729 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 1566249..1569074 Polaromonas naphthalenivorans CJ2 4689922 YP_981714.1 CDS Pnap_1479 NC_008781.1 1569092 1569568 R KEGG: bur:Bcep18194_B0200 integral membrane protein-like; integral membrane protein complement(1569092..1569568) Polaromonas naphthalenivorans CJ2 4687573 YP_981715.1 CDS Pnap_1480 NC_008781.1 1569565 1569951 R KEGG: mfa:Mfla_1438 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1569565..1569951) Polaromonas naphthalenivorans CJ2 4689765 YP_981716.1 CDS Pnap_1481 NC_008781.1 1569948 1570865 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: bur:Bcep18194_B0199 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1569948..1570865) Polaromonas naphthalenivorans CJ2 4687065 YP_981717.1 CDS Pnap_1482 NC_008781.1 1570884 1571396 R PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: bur:Bcep18194_B0201 putative thiol-disulphide oxidoreductase DCC; putative thiol-disulfide oxidoreductase DCC complement(1570884..1571396) Polaromonas naphthalenivorans CJ2 4686861 YP_981718.1 CDS Pnap_1483 NC_008781.1 1571463 1571987 R KEGG: cvi:CV2106 probable transcriptional regulator; putative transcriptional regulator complement(1571463..1571987) Polaromonas naphthalenivorans CJ2 4686520 YP_981719.1 CDS Pnap_1484 NC_008781.1 1572285 1573100 D PFAM: zinc/iron permease; KEGG: pol:Bpro_1734 zinc/iron permease; zinc/iron permease 1572285..1573100 Polaromonas naphthalenivorans CJ2 4686737 YP_981720.1 CDS Pnap_1485 NC_008781.1 1573501 1574499 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_1736 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(1573501..1574499) Polaromonas naphthalenivorans CJ2 4686988 YP_981721.1 CDS Pnap_1486 NC_008781.1 1574502 1575449 R PFAM: PfkB domain protein; KEGG: pol:Bpro_1737 PfkB; ribokinase-like domain-containing protein complement(1574502..1575449) Polaromonas naphthalenivorans CJ2 4687744 YP_981722.1 CDS Pnap_1487 NC_008781.1 1575446 1576261 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: epimerase KguE, putative; xylose isomerase domain-containing protein complement(1575446..1576261) Polaromonas naphthalenivorans CJ2 4687554 YP_981723.1 CDS Pnap_1488 NC_008781.1 1576251 1577048 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMa0083 putative ABC transporter ATP-binding protein; ABC transporter-like protein complement(1576251..1577048) Polaromonas naphthalenivorans CJ2 4687697 YP_981724.1 CDS Pnap_1489 NC_008781.1 1577081 1577887 R PFAM: extracellular solute-binding protein, family 3; KEGG: sme:SMa0082 putative ABC transporter, periplasmic solute-binding protein; extracellular solute-binding protein complement(1577081..1577887) Polaromonas naphthalenivorans CJ2 4688456 YP_981725.1 CDS Pnap_1490 NC_008781.1 1577946 1579148 R KEGG: bcn:Bcen_5721 hypothetical protein; hypothetical protein complement(1577946..1579148) Polaromonas naphthalenivorans CJ2 4688016 YP_981726.1 CDS Pnap_1491 NC_008781.1 1579205 1579858 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0081 putative ABC transporter permease; polar amino acid ABC transporter inner membrane subunit complement(1579205..1579858) Polaromonas naphthalenivorans CJ2 4688103 YP_981727.1 CDS Pnap_1492 NC_008781.1 1579858 1580529 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0079 putative ABC transporter permease; polar amino acid ABC transporter inner membrane subunit complement(1579858..1580529) Polaromonas naphthalenivorans CJ2 4688235 YP_981728.1 CDS Pnap_1493 NC_008781.1 1580691 1581821 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_1738 transcriptional regulator, LacI family; regulatory protein, LacI complement(1580691..1581821) Polaromonas naphthalenivorans CJ2 4688459 YP_981729.1 CDS Pnap_1494 NC_008781.1 1582943 1583179 R KEGG: pol:Bpro_1739 hypothetical protein; hypothetical protein complement(1582943..1583179) Polaromonas naphthalenivorans CJ2 4688607 YP_981730.1 CDS Pnap_1495 NC_008781.1 1583442 1583705 R hypothetical protein complement(1583442..1583705) Polaromonas naphthalenivorans CJ2 4688633 YP_981731.1 CDS Pnap_1496 NC_008781.1 1583744 1584646 R PFAM: Rhodanese domain protein; KEGG: pol:Bpro_1742 3-mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase complement(1583744..1584646) Polaromonas naphthalenivorans CJ2 4689187 YP_981732.1 CDS Pnap_1497 NC_008781.1 1584669 1585571 R KEGG: pol:Bpro_1743 putative transmembrane protein; hypothetical protein complement(1584669..1585571) Polaromonas naphthalenivorans CJ2 4689107 YP_981733.1 CDS Pnap_1498 NC_008781.1 1585678 1586796 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_1744 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(1585678..1586796) Polaromonas naphthalenivorans CJ2 4689308 YP_981734.1 CDS Pnap_1499 NC_008781.1 1587084 1587365 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: pol:Bpro_1745 exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 1587084..1587365 Polaromonas naphthalenivorans CJ2 4690203 YP_981735.1 CDS Pnap_1500 NC_008781.1 1587362 1588345 D PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_1746 polyprenyl synthetase; polyprenyl synthetase 1587362..1588345 Polaromonas naphthalenivorans CJ2 4687750 YP_981736.1 CDS Pnap_1501 NC_008781.1 1588383 1590293 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1588383..1590293 Polaromonas naphthalenivorans CJ2 4689625 YP_981737.1 CDS Pnap_1502 NC_008781.1 1590446 1591528 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_2874 twin-arginine translocation pathway signal; TRAP dicarboxylate transporter subunit DctP 1590446..1591528 Polaromonas naphthalenivorans CJ2 4689562 YP_981738.1 CDS Pnap_1503 NC_008781.1 1591595 1593397 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_2872 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1591595..1593397) Polaromonas naphthalenivorans CJ2 4689519 YP_981739.1 CDS Pnap_1504 NC_008781.1 1593413 1594012 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rfr:Rfer_2871 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(1593413..1594012) Polaromonas naphthalenivorans CJ2 4689200 YP_981740.1 CDS Pnap_1505 NC_008781.1 1594200 1595282 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(1594200..1595282) Polaromonas naphthalenivorans CJ2 4689436 YP_981741.1 CDS Pnap_1506 NC_008781.1 1595444 1596745 D PFAM: protein of unknown function DUF323; KEGG: pol:Bpro_1756 protein of unknown function DUF323; hypothetical protein 1595444..1596745 Polaromonas naphthalenivorans CJ2 4689379 YP_981742.1 CDS Pnap_1507 NC_008781.1 1597071 1597538 D hypothetical protein 1597071..1597538 Polaromonas naphthalenivorans CJ2 4688919 YP_981743.1 CDS Pnap_1508 NC_008781.1 1597490 1598617 R PFAM: regulatory protein, LysR; KEGG: pol:Bpro_1757 transcriptional regulator of molybdate metabolism, LysR family; molybdate metabolism transcriptional regulator complement(1597490..1598617) Polaromonas naphthalenivorans CJ2 4688881 YP_981744.1 CDS Pnap_1509 NC_008781.1 1598756 1599520 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1758 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1598756..1599520 Polaromonas naphthalenivorans CJ2 4688845 YP_981745.1 CDS Pnap_1510 NC_008781.1 1599517 1600206 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1759 ABC transporter related; ABC transporter-like protein 1599517..1600206 Polaromonas naphthalenivorans CJ2 4688813 YP_981746.1 CDS Pnap_1511 NC_008781.1 1600203 1601030 D KEGG: pol:Bpro_1760 hypothetical protein; hypothetical protein 1600203..1601030 Polaromonas naphthalenivorans CJ2 4688752 YP_981747.1 CDS Pnap_1512 NC_008781.1 1601155 1601463 D hypothetical protein 1601155..1601463 Polaromonas naphthalenivorans CJ2 4687861 YP_981748.1 CDS Pnap_1513 NC_008781.1 1601548 1602138 D PFAM: nuclear export factor GLE1; KEGG: pol:Bpro_1762 nuclear export factor GLE1; nuclear export factor GLE1 1601548..1602138 Polaromonas naphthalenivorans CJ2 4688128 YP_981749.1 CDS Pnap_1514 NC_008781.1 1602203 1602700 D PFAM: protein of unknown function DUF461; KEGG: pol:Bpro_1764 protein of unknown function DUF461; hypothetical protein 1602203..1602700 Polaromonas naphthalenivorans CJ2 4688082 YP_981750.1 CDS Pnap_1515 NC_008781.1 1602898 1603428 D KEGG: pol:Bpro_0042 hemerythrin HHE cation binding region; hemerythrin HHE cation-binding region 1602898..1603428 Polaromonas naphthalenivorans CJ2 4687982 YP_981751.1 CDS Pnap_1516 NC_008781.1 1603481 1603867 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(1603481..1603867) Polaromonas naphthalenivorans CJ2 4687500 YP_981752.1 CDS Pnap_1517 NC_008781.1 1603962 1607624 D PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pol:Bpro_1781 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase 1603962..1607624 Polaromonas naphthalenivorans CJ2 4687393 YP_981753.1 CDS Pnap_1518 NC_008781.1 1607645 1608493 D KEGG: rme:Rmet_3161 hypothetical protein; hypothetical protein 1607645..1608493 Polaromonas naphthalenivorans CJ2 4687364 YP_981754.1 CDS Pnap_1519 NC_008781.1 1608571 1608942 R TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: psp:PSPPH_3177 potassium efflux system protein PhaG; monovalent cation/proton antiporter subunit MnhG/PhaG complement(1608571..1608942) Polaromonas naphthalenivorans CJ2 4687039 YP_981755.1 CDS Pnap_1520 NC_008781.1 1608939 1609217 R PFAM: multiple resistance and pH regulation protein F; KEGG: eba:ebA554 protein F of Na+/H+ antiporter of putative pH adaptation potassium efflux system; multiple resistance and pH regulation protein F complement(1608939..1609217) Polaromonas naphthalenivorans CJ2 4686694 YP_981756.1 CDS Pnap_1521 NC_008781.1 1609214 1609705 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E complement(1609214..1609705) Polaromonas naphthalenivorans CJ2 4686677 YP_981757.1 CDS Pnap_1522 NC_008781.1 1609702 1611423 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(1609702..1611423) Polaromonas naphthalenivorans CJ2 4686614 YP_981758.1 CDS Pnap_1523 NC_008781.1 1611420 1611791 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(1611420..1611791) Polaromonas naphthalenivorans CJ2 4686491 YP_981759.1 CDS Pnap_1524 NC_008781.1 1611791 1614736 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A complement(1611791..1614736) Polaromonas naphthalenivorans CJ2 4686059 YP_981760.1 CDS Pnap_1525 NC_008781.1 1614967 1616109 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1614967..1616109) Polaromonas naphthalenivorans CJ2 4686754 YP_981761.1 CDS dnaK NC_008781.1 1616295 1618238 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1616295..1618238) Polaromonas naphthalenivorans CJ2 4688096 YP_981762.1 CDS Pnap_1527 NC_008781.1 1618406 1618975 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1618406..1618975) Polaromonas naphthalenivorans CJ2 4690213 YP_981763.1 CDS Pnap_1528 NC_008781.1 1619207 1619530 R KEGG: pol:Bpro_3120 putative transcriptional regulator; putative transcriptional regulator complement(1619207..1619530) Polaromonas naphthalenivorans CJ2 4688818 YP_981764.1 CDS Pnap_1529 NC_008781.1 1619755 1620549 R PFAM: Extensin family protein; KEGG: psb:Psyr_1323 extensin-like, C-terminal; extensin family protein complement(1619755..1620549) Polaromonas naphthalenivorans CJ2 4688075 YP_981765.1 CDS Pnap_1530 NC_008781.1 1620557 1620934 R PFAM: protein of unknown function DUF1696; KEGG: oih:OB3216 hypothetical protein; hypothetical protein complement(1620557..1620934) Polaromonas naphthalenivorans CJ2 4687295 YP_981766.1 CDS Pnap_1531 NC_008781.1 1620999 1621952 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_0496 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(1620999..1621952) Polaromonas naphthalenivorans CJ2 4686566 YP_981767.1 CDS Pnap_1532 NC_008781.1 1622360 1622782 D KEGG: rsp:RSP_2021 mono-heme class I cytochrome c; mono-heme class I cytochrome c 1622360..1622782 Polaromonas naphthalenivorans CJ2 4686773 YP_981768.1 CDS Pnap_1533 NC_008781.1 1622829 1623311 D KEGG: rfr:Rfer_0745 diheme cytochrome c; diheme cytochrome c 1622829..1623311 Polaromonas naphthalenivorans CJ2 4686199 YP_981769.1 CDS Pnap_1534 NC_008781.1 1623331 1624095 D PFAM: cytochrome B561; KEGG: bte:BTH_II0067 CybP; cytochrome B561 1623331..1624095 Polaromonas naphthalenivorans CJ2 4687507 YP_981770.1 CDS Pnap_1535 NC_008781.1 1624108 1624776 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0503 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1624108..1624776 Polaromonas naphthalenivorans CJ2 4688199 YP_981771.1 CDS Pnap_1536 NC_008781.1 1624773 1626122 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_0504 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1624773..1626122 Polaromonas naphthalenivorans CJ2 4688821 YP_981772.1 CDS Pnap_1537 NC_008781.1 1626287 1626994 D PFAM: protein of unknown function DUF125, transmembrane; KEGG: eba:ebA544 hypothetical protein; hypothetical protein 1626287..1626994 Polaromonas naphthalenivorans CJ2 4690026 YP_981773.1 CDS Pnap_1538 NC_008781.1 1627015 1628259 R PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rfr:Rfer_1334 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(1627015..1628259) Polaromonas naphthalenivorans CJ2 4688491 YP_981774.1 CDS Pnap_1539 NC_008781.1 1628519 1629139 D PFAM: NADPH-dependent FMN reductase; KEGG: pol:Bpro_2371 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1628519..1629139 Polaromonas naphthalenivorans CJ2 4686726 YP_981775.1 CDS Pnap_1540 NC_008781.1 1629223 1629876 R PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pol:Bpro_2372 (acyl-carrier protein) phosphodiesterase; (acyl-carrier-protein) phosphodiesterase complement(1629223..1629876) Polaromonas naphthalenivorans CJ2 4686330 YP_981776.1 CDS Pnap_1541 NC_008781.1 1630029 1630958 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2373 transcriptional regulator, LysR family; LysR family transcriptional regulator 1630029..1630958 Polaromonas naphthalenivorans CJ2 4686129 YP_981777.1 CDS Pnap_1542 NC_008781.1 1631270 1631848 D PFAM: protein of unknown function DUF1234; KEGG: pol:Bpro_2375 protein of unknown function DUF1234; hypothetical protein 1631270..1631848 Polaromonas naphthalenivorans CJ2 4686590 YP_981778.1 CDS Pnap_1543 NC_008781.1 1631845 1632837 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2376 thiosulphate-binding protein; sulfate ABC transporter substrate-binding protein 1631845..1632837 Polaromonas naphthalenivorans CJ2 4686634 YP_981779.1 CDS Pnap_1544 NC_008781.1 1632840 1633733 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2377 sulfate ABC transporter, permease protein CysT; sulfate ABC transporter permease 1632840..1633733 Polaromonas naphthalenivorans CJ2 4686687 YP_981780.1 CDS Pnap_1545 NC_008781.1 1633730 1634638 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2378 sulfate ABC transporter, permease protein CysW; sulfate ABC transporter permease 1633730..1634638 Polaromonas naphthalenivorans CJ2 4687267 YP_981781.1 CDS Pnap_1546 NC_008781.1 1634662 1635750 D KEGG: pol:Bpro_2379 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 1634662..1635750 Polaromonas naphthalenivorans CJ2 4687323 YP_981782.1 CDS Pnap_1547 NC_008781.1 1635750 1636253 D PFAM: Disulphide bond formation protein DsbB; KEGG: pol:Bpro_2385 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 1635750..1636253 Polaromonas naphthalenivorans CJ2 4687406 YP_981783.1 CDS Pnap_1548 NC_008781.1 1636287 1637117 R PFAM: amidohydrolase 2; KEGG: bja:blr2258 putative 2-pyrone-4,6-dicarbaxylate hydrolase; amidohydrolase 2 complement(1636287..1637117) Polaromonas naphthalenivorans CJ2 4687462 YP_981784.1 CDS Pnap_1549 NC_008781.1 1637226 1638140 D KEGG: pol:Bpro_4509 hypothetical protein; hypothetical protein 1637226..1638140 Polaromonas naphthalenivorans CJ2 4687943 YP_981785.1 CDS Pnap_1550 NC_008781.1 1638184 1639185 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4508 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1638184..1639185) Polaromonas naphthalenivorans CJ2 4687726 YP_981786.1 CDS Pnap_1551 NC_008781.1 1639234 1640172 D KEGG: pol:Bpro_4507 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 1639234..1640172 Polaromonas naphthalenivorans CJ2 4688099 YP_981787.1 CDS Pnap_1552 NC_008781.1 1640201 1640599 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_4506 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1640201..1640599 Polaromonas naphthalenivorans CJ2 4688144 YP_981788.1 CDS Pnap_1553 NC_008781.1 1640638 1641123 D PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_4505 MaoC-like dehydratase; dehydratase 1640638..1641123 Polaromonas naphthalenivorans CJ2 4688753 YP_981789.1 CDS Pnap_1554 NC_008781.1 1641184 1642425 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4504 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1641184..1642425 Polaromonas naphthalenivorans CJ2 4688594 YP_981790.1 CDS Pnap_1555 NC_008781.1 1642422 1643249 D KEGG: pol:Bpro_4503 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate 5-dehydrogenase 1642422..1643249 Polaromonas naphthalenivorans CJ2 4688800 YP_981791.1 CDS Pnap_1556 NC_008781.1 1643429 1643968 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_4501 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1643429..1643968 Polaromonas naphthalenivorans CJ2 4688873 YP_981792.1 CDS Pnap_1557 NC_008781.1 1643984 1645261 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_4500 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 1643984..1645261 Polaromonas naphthalenivorans CJ2 4688917 YP_981793.1 CDS Pnap_1558 NC_008781.1 1645368 1646372 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4499 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 1645368..1646372 Polaromonas naphthalenivorans CJ2 4688944 YP_981794.1 CDS Pnap_1559 NC_008781.1 1646501 1646947 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1646501..1646947 Polaromonas naphthalenivorans CJ2 4689445 YP_981795.1 CDS Pnap_1560 NC_008781.1 1646981 1648879 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_4496 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1646981..1648879 Polaromonas naphthalenivorans CJ2 4689468 YP_981796.1 CDS Pnap_1561 NC_008781.1 1648918 1649751 D PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: pol:Bpro_4495 shikimate 5-dehydrogenase; shikimate dehydrogenase 1648918..1649751 Polaromonas naphthalenivorans CJ2 4689507 YP_981797.1 CDS Pnap_1562 NC_008781.1 1649823 1651019 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1649823..1651019) Polaromonas naphthalenivorans CJ2 4689542 YP_981798.1 CDS Pnap_1563 NC_008781.1 1651193 1653301 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1651193..1653301 Polaromonas naphthalenivorans CJ2 4689593 YP_981799.1 CDS Pnap_1564 NC_008781.1 1653437 1653772 R TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: bxe:Bxe_B1439 (2FE-2S) ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta complement(1653437..1653772) Polaromonas naphthalenivorans CJ2 4689653 YP_981800.1 CDS Pnap_1565 NC_008781.1 1653816 1655693 R TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; KEGG: bxe:Bxe_B1440 Fe-S protein assembly chaperone HscA; Fe-S protein assembly chaperone HscA complement(1653816..1655693) Polaromonas naphthalenivorans CJ2 4689888 YP_981801.1 CDS Pnap_1566 NC_008781.1 1655705 1656028 R TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: bxe:Bxe_B1441 HesB/YadR/YfhF, iron-sulphur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA complement(1655705..1656028) Polaromonas naphthalenivorans CJ2 4689804 YP_981802.1 CDS Pnap_1567 NC_008781.1 1656040 1656417 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(1656040..1656417) Polaromonas naphthalenivorans CJ2 4689042 YP_981803.1 CDS Pnap_1568 NC_008781.1 1656469 1656921 R TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: bxe:Bxe_B1443 FeS cluster assembly scaffold IscU; scaffold protein complement(1656469..1656921) Polaromonas naphthalenivorans CJ2 4689795 YP_981804.1 CDS Pnap_1569 NC_008781.1 1656985 1658229 R TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; KEGG: bxe:Bxe_B1444 cysteine desulfurase IscS; cysteine desulfurase IscS complement(1656985..1658229) Polaromonas naphthalenivorans CJ2 4689024 YP_981805.1 CDS Pnap_1570 NC_008781.1 1658567 1660276 D KEGG: bxe:Bxe_B1445 transcriptional regulator, NifA, fis family; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; transcriptional regulator NifA 1658567..1660276 Polaromonas naphthalenivorans CJ2 4688344 YP_981806.1 CDS Pnap_1571 NC_008781.1 1660372 1660860 R PFAM: GCN5-related N-acetyltransferase; KEGG: eba:ebA5964 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1660372..1660860) Polaromonas naphthalenivorans CJ2 4688273 YP_981807.1 CDS Pnap_1572 NC_008781.1 1660857 1661141 R KEGG: xcb:XC_1052 hypothetical protein; hypothetical protein complement(1660857..1661141) Polaromonas naphthalenivorans CJ2 4688238 YP_981808.1 CDS Pnap_1573 NC_008781.1 1661279 1661557 D hypothetical protein 1661279..1661557 Polaromonas naphthalenivorans CJ2 4687911 YP_981809.1 CDS Pnap_1574 NC_008781.1 1661636 1663231 D TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM domain protein; KEGG: bxe:Bxe_B1446 nitrogenase cofactor biosynthesis protein NifB; nitrogenase cofactor biosynthesis protein NifB 1661636..1663231 Polaromonas naphthalenivorans CJ2 4688035 YP_981810.1 CDS Pnap_1575 NC_008781.1 1663266 1663460 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpa:RPA4629 ferredoxin 2[4Fe-4S], FdxN; 4Fe-4S ferredoxin 1663266..1663460 Polaromonas naphthalenivorans CJ2 4688521 YP_981811.1 CDS Pnap_1576 NC_008781.1 1663487 1663897 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bxe:Bxe_B1447 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein 1663487..1663897 Polaromonas naphthalenivorans CJ2 4688369 YP_981812.1 CDS Pnap_1577 NC_008781.1 1663924 1664493 D KEGG: bxe:Bxe_B1448 hypothetical protein; hypothetical protein 1663924..1664493 Polaromonas naphthalenivorans CJ2 4686845 YP_981813.1 CDS Pnap_1578 NC_008781.1 1664490 1665329 D PFAM: leucine rich repeat variant; KEGG: bxe:Bxe_B1449 hypothetical protein; hypothetical protein 1664490..1665329 Polaromonas naphthalenivorans CJ2 4687675 YP_981814.1 CDS Pnap_1579 NC_008781.1 1665322 1665684 D PFAM: NifZ family protein; KEGG: bxe:Bxe_B1450 hypothetical protein; NifZ family protein 1665322..1665684 Polaromonas naphthalenivorans CJ2 4687052 YP_981815.1 CDS Pnap_1580 NC_008781.1 1665681 1665992 D PFAM: NifZ family protein; KEGG: bxe:Bxe_B1451 hypothetical protein; NifZ family protein 1665681..1665992 Polaromonas naphthalenivorans CJ2 4686804 YP_981816.1 CDS Pnap_1581 NC_008781.1 1665989 1666342 D KEGG: bxe:Bxe_B1452 hypothetical protein; hypothetical protein 1665989..1666342 Polaromonas naphthalenivorans CJ2 4686524 YP_981817.1 CDS Pnap_1582 NC_008781.1 1666367 1667515 D PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_B1453 putative cysteine desulfurase; class V aminotransferase 1666367..1667515 Polaromonas naphthalenivorans CJ2 4687003 YP_981818.1 CDS Pnap_1583 NC_008781.1 1667559 1667777 D PFAM: NifT/FixU family protein; KEGG: bxe:Bxe_B1454 nitrogen fixation protein; NifT/FixU family protein 1667559..1667777 Polaromonas naphthalenivorans CJ2 4686879 YP_981819.1 CDS Pnap_1584 NC_008781.1 1667789 1668052 D KEGG: bxe:Bxe_B1455 hypothetical protein; hypothetical protein 1667789..1668052 Polaromonas naphthalenivorans CJ2 4686506 YP_981820.1 CDS Pnap_1585 NC_008781.1 1668057 1669220 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_B1456 putative DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1668057..1669220 Polaromonas naphthalenivorans CJ2 4686389 YP_981821.1 CDS Pnap_1586 NC_008781.1 1669231 1670076 D KEGG: bxe:Bxe_B1457 hypothetical protein; hypothetical protein 1669231..1670076 Polaromonas naphthalenivorans CJ2 4686373 YP_981822.1 CDS Pnap_1587 NC_008781.1 1670137 1670463 D PFAM: ferredoxin; KEGG: bxe:Bxe_B1458 putative (2Fe-2S) ferredoxin; ferredoxin 1670137..1670463 Polaromonas naphthalenivorans CJ2 4686051 YP_981823.1 CDS Pnap_1588 NC_008781.1 1670488 1672119 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mca:MCA2837 amine oxidase family, flavin-containing protein; amine oxidase 1670488..1672119 Polaromonas naphthalenivorans CJ2 4690143 YP_981824.1 CDS Pnap_1589 NC_008781.1 1672397 1673962 D PFAM: protein of unknown function UPF0061; KEGG: mca:MCA0585 hypothetical protein; hypothetical protein 1672397..1673962 Polaromonas naphthalenivorans CJ2 4686422 YP_981825.1 CDS Pnap_1590 NC_008781.1 1674041 1674862 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_3110 GntR-like; GntR family transcriptional regulator complement(1674041..1674862) Polaromonas naphthalenivorans CJ2 4686445 YP_981826.1 CDS Pnap_1591 NC_008781.1 1675002 1675811 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_3109 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1675002..1675811 Polaromonas naphthalenivorans CJ2 4686479 YP_981827.1 CDS Pnap_1592 NC_008781.1 1675818 1676720 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pol:Bpro_3108 senescence marker protein-30 (SMP-30); SMP-30/gluconolaconase/LRE domain-containing protein 1675818..1676720 Polaromonas naphthalenivorans CJ2 4686474 YP_981828.1 CDS Pnap_1593 NC_008781.1 1676757 1677728 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_3107 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 1676757..1677728 Polaromonas naphthalenivorans CJ2 4686449 YP_981829.1 CDS Pnap_1594 NC_008781.1 1677772 1678326 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_3106 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1677772..1678326 Polaromonas naphthalenivorans CJ2 4686495 YP_981830.1 CDS Pnap_1595 NC_008781.1 1678317 1679609 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_3105 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 1678317..1679609 Polaromonas naphthalenivorans CJ2 4686548 YP_981831.1 CDS Pnap_1596 NC_008781.1 1679672 1680583 D catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 1679672..1680583 Polaromonas naphthalenivorans CJ2 4686162 YP_981832.1 CDS Pnap_1597 NC_008781.1 1680606 1682204 D PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3104 galactarate dehydratase; galactarate dehydratase 1680606..1682204 Polaromonas naphthalenivorans CJ2 4686516 YP_981833.1 CDS Pnap_1598 NC_008781.1 1682247 1683686 D PFAM: aldehyde dehydrogenase; KEGG: rfr:Rfer_0452 aldehyde dehydrogenase; aldehyde dehydrogenase 1682247..1683686 Polaromonas naphthalenivorans CJ2 4686172 YP_981834.1 CDS Pnap_1599 NC_008781.1 1683763 1684545 D cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 1683763..1684545 Polaromonas naphthalenivorans CJ2 4686586 YP_981835.1 CDS Pnap_1600 NC_008781.1 1684585 1685466 D KEGG: pol:Bpro_3102 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 1684585..1685466 Polaromonas naphthalenivorans CJ2 4686191 YP_981836.1 CDS Pnap_1601 NC_008781.1 1685504 1686472 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3101 uncharacterized protein UPF0065; hypothetical protein 1685504..1686472 Polaromonas naphthalenivorans CJ2 4686220 YP_981837.1 CDS Pnap_1602 NC_008781.1 1686580 1687572 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_2479 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 1686580..1687572 Polaromonas naphthalenivorans CJ2 4686619 YP_981838.1 CDS Pnap_1603 NC_008781.1 1687642 1687824 R hypothetical protein complement(1687642..1687824) Polaromonas naphthalenivorans CJ2 4686661 YP_981839.1 CDS Pnap_1604 NC_008781.1 1687984 1690194 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: pol:Bpro_3097 sigma 70 (RpoD); RpoD family RNA polymerase sigma factor complement(1687984..1690194) Polaromonas naphthalenivorans CJ2 4686680 YP_981840.1 CDS Pnap_1605 NC_008781.1 1690589 1692619 R KEGG: pol:Bpro_3096 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase complement(1690589..1692619) Polaromonas naphthalenivorans CJ2 4686663 YP_981841.1 CDS Pnap_1606 NC_008781.1 1692714 1693649 D TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_3095 ribonuclease BN, putative; putative ribonuclease BN 1692714..1693649 Polaromonas naphthalenivorans CJ2 4687281 YP_981842.1 CDS Pnap_1607 NC_008781.1 1693731 1695587 R KEGG: pol:Bpro_3094 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(1693731..1695587) Polaromonas naphthalenivorans CJ2 4687283 YP_981843.1 CDS Pnap_1608 NC_008781.1 1695767 1696228 R hypothetical protein complement(1695767..1696228) Polaromonas naphthalenivorans CJ2 4687320 YP_981844.1 CDS Pnap_1609 NC_008781.1 1696402 1697169 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_2204 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1696402..1697169) Polaromonas naphthalenivorans CJ2 4687158 YP_981845.1 CDS Pnap_1610 NC_008781.1 1697339 1698397 R PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_3092 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1697339..1698397) Polaromonas naphthalenivorans CJ2 4687349 YP_981846.1 CDS Pnap_1611 NC_008781.1 1698427 1699410 D PFAM: Patatin; KEGG: pol:Bpro_3091 patatin; patatin 1698427..1699410 Polaromonas naphthalenivorans CJ2 4687161 YP_981847.1 CDS Pnap_1612 NC_008781.1 1699652 1700194 R TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin; phasin family protein complement(1699652..1700194) Polaromonas naphthalenivorans CJ2 4687200 YP_981848.1 CDS Pnap_1613 NC_008781.1 1700324 1701325 D PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3087 histone deacetylase superfamily; histone deacetylase superfamily protein 1700324..1701325 Polaromonas naphthalenivorans CJ2 4687194 YP_981849.1 CDS Pnap_1614 NC_008781.1 1701325 1701792 D PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3086 thioesterase superfamily; thioesterase superfamily protein 1701325..1701792 Polaromonas naphthalenivorans CJ2 4687405 YP_981850.1 CDS Pnap_1615 NC_008781.1 1701789 1702562 D PFAM: nitroreductase; KEGG: pol:Bpro_3085 nitroreductase; nitroreductase 1701789..1702562 Polaromonas naphthalenivorans CJ2 4687412 YP_981851.1 CDS Pnap_1616 NC_008781.1 1702567 1704435 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_3084 inner-membrane translocator; inner-membrane translocator 1702567..1704435 Polaromonas naphthalenivorans CJ2 4687414 YP_981852.1 CDS Pnap_1617 NC_008781.1 1704435 1705193 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3083 ABC transporter related; ABC transporter-like protein 1704435..1705193 Polaromonas naphthalenivorans CJ2 4686560 YP_981853.1 CDS Pnap_1618 NC_008781.1 1705186 1705827 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3082 ABC transporter related; ABC transporter-like protein 1705186..1705827 Polaromonas naphthalenivorans CJ2 4687241 YP_981854.1 CDS Pnap_1619 NC_008781.1 1705889 1706242 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_3081 peptidylprolyl isomerase; FKBP-type peptidylprolyl isomerase 1705889..1706242 Polaromonas naphthalenivorans CJ2 4687189 YP_981855.1 CDS Pnap_1620 NC_008781.1 1706340 1707539 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1706340..1707539 Polaromonas naphthalenivorans CJ2 4687506 YP_981856.1 CDS Pnap_1621 NC_008781.1 1707544 1708977 D KEGG: pol:Bpro_3079 putative transmembrane protein; hypothetical protein 1707544..1708977 Polaromonas naphthalenivorans CJ2 4687979 YP_981857.1 CDS Pnap_1622 NC_008781.1 1708996 1709982 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 1708996..1709982 Polaromonas naphthalenivorans CJ2 4687974 YP_981858.1 CDS Pnap_1623 NC_008781.1 1710013 1711338 D PFAM: protein of unknown function DUF195; KEGG: pol:Bpro_3077 protein of unknown function DUF195; hypothetical protein 1710013..1711338 Polaromonas naphthalenivorans CJ2 4687591 YP_981859.1 CDS Pnap_1624 NC_008781.1 1711369 1712232 R PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_3075 conserved hypothetical protein 730; hypothetical protein complement(1711369..1712232) Polaromonas naphthalenivorans CJ2 4688028 YP_981860.1 CDS Pnap_1625 NC_008781.1 1712412 1712966 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1712412..1712966) Polaromonas naphthalenivorans CJ2 4688061 YP_981861.1 CDS Pnap_1626 NC_008781.1 1713098 1714225 R KEGG: pol:Bpro_3073 hypothetical protein; hypothetical protein complement(1713098..1714225) Polaromonas naphthalenivorans CJ2 4688060 YP_981862.1 CDS uvrC NC_008781.1 1714259 1716208 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1714259..1716208 Polaromonas naphthalenivorans CJ2 4687416 YP_981863.1 CDS Pnap_1628 NC_008781.1 1716231 1716836 D KEGG: pol:Bpro_3070 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1716231..1716836 Polaromonas naphthalenivorans CJ2 4688085 YP_981864.1 CDS Pnap_1629 NC_008781.1 1716860 1717780 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_3069 protein of unknown function DUF6, transmembrane; hypothetical protein 1716860..1717780 Polaromonas naphthalenivorans CJ2 4687785 YP_981865.1 CDS Pnap_1630 NC_008781.1 1717740 1718702 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3068 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1717740..1718702) Polaromonas naphthalenivorans CJ2 4688163 YP_981866.1 CDS Pnap_1631 NC_008781.1 1718828 1719706 D PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3067 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1718828..1719706 Polaromonas naphthalenivorans CJ2 4688173 YP_981867.1 CDS Pnap_1632 NC_008781.1 1719723 1720829 D KEGG: pol:Bpro_3066 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1719723..1720829 Polaromonas naphthalenivorans CJ2 4688174 YP_981868.1 CDS Pnap_1633 NC_008781.1 1721079 1721351 D PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_3065 histone-like DNA-binding protein; histone family protein DNA-binding protein 1721079..1721351 Polaromonas naphthalenivorans CJ2 4688178 YP_981869.1 CDS Pnap_1634 NC_008781.1 1721523 1723460 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_3064 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1721523..1723460 Polaromonas naphthalenivorans CJ2 4687865 YP_981870.1 CDS Pnap_1635 NC_008781.1 1723654 1724166 R TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: rfr:Rfer_2842 2',5' RNA ligase; 2'-5' RNA ligase complement(1723654..1724166) Polaromonas naphthalenivorans CJ2 4688440 YP_981871.1 CDS Pnap_1636 NC_008781.1 1724338 1726437 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1724338..1726437 Polaromonas naphthalenivorans CJ2 4688610 YP_981872.1 CDS Pnap_1637 NC_008781.1 1726673 1727689 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_5572 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1726673..1727689 Polaromonas naphthalenivorans CJ2 4688358 YP_981873.1 CDS Pnap_1638 NC_008781.1 1728067 1730652 R KEGG: rxy:Rxyl_2670 hypothetical protein; hypothetical protein complement(1728067..1730652) Polaromonas naphthalenivorans CJ2 4688598 YP_981874.1 CDS Pnap_1639 NC_008781.1 1731029 1731394 R hypothetical protein complement(1731029..1731394) Polaromonas naphthalenivorans CJ2 4688837 YP_981875.1 CDS Pnap_1640 NC_008781.1 1731415 1733403 R KEGG: rxy:Rxyl_2670 hypothetical protein; hypothetical protein complement(1731415..1733403) Polaromonas naphthalenivorans CJ2 4688876 YP_981876.1 CDS Pnap_1641 NC_008781.1 1733466 1733813 R hypothetical protein complement(1733466..1733813) Polaromonas naphthalenivorans CJ2 4688648 YP_981877.1 CDS Pnap_1642 NC_008781.1 1733827 1735206 R KEGG: nmu:Nmul_A2433 hypothetical protein; hypothetical protein complement(1733827..1735206) Polaromonas naphthalenivorans CJ2 4688850 YP_981878.1 CDS Pnap_1643 NC_008781.1 1735206 1736717 R PFAM: glycosyl transferase, group 1; KEGG: nmu:Nmul_A2434 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1735206..1736717) Polaromonas naphthalenivorans CJ2 4688914 YP_981879.1 CDS Pnap_1644 NC_008781.1 1736695 1737699 R KEGG: pfl:PFL_2976 hypothetical protein; hypothetical protein complement(1736695..1737699) Polaromonas naphthalenivorans CJ2 4689362 YP_981880.1 CDS Pnap_1645 NC_008781.1 1737723 1738874 R KEGG: pau:PA14_24510 hypothetical protein; hypothetical protein complement(1737723..1738874) Polaromonas naphthalenivorans CJ2 4689353 YP_981881.1 CDS Pnap_1646 NC_008781.1 1739268 1741535 R KEGG: nmu:Nmul_A2441 hypothetical protein; hypothetical protein complement(1739268..1741535) Polaromonas naphthalenivorans CJ2 4688918 YP_981882.1 CDS Pnap_1647 NC_008781.1 1741619 1742407 R KEGG: nmu:Nmul_A2432 putative signal peptide protein; putative signal peptide protein complement(1741619..1742407) Polaromonas naphthalenivorans CJ2 4687754 YP_981883.1 CDS Pnap_1648 NC_008781.1 1743035 1743847 R PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1846 transcriptional regulator, IclR family; regulatory proteins, IclR complement(1743035..1743847) Polaromonas naphthalenivorans CJ2 4689400 YP_981884.1 CDS Pnap_1649 NC_008781.1 1744042 1744953 D PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: pol:Bpro_1847 shikimate 5-dehydrogenase; shikimate dehydrogenase 1744042..1744953 Polaromonas naphthalenivorans CJ2 4689201 YP_981885.1 CDS Pnap_1650 NC_008781.1 1744973 1746154 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_1848 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1744973..1746154 Polaromonas naphthalenivorans CJ2 4689407 YP_981886.1 CDS Pnap_1651 NC_008781.1 1746260 1747135 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_1849 inner-membrane translocator; inner-membrane translocator 1746260..1747135 Polaromonas naphthalenivorans CJ2 4689163 YP_981887.1 CDS Pnap_1652 NC_008781.1 1747132 1748142 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_1850 inner-membrane translocator; inner-membrane translocator 1747132..1748142 Polaromonas naphthalenivorans CJ2 4689252 YP_981888.1 CDS Pnap_1653 NC_008781.1 1748139 1748885 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1851 ABC transporter related; ABC transporter-like protein 1748139..1748885 Polaromonas naphthalenivorans CJ2 4689534 YP_981889.1 CDS Pnap_1654 NC_008781.1 1748888 1749652 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1852 ABC transporter related; ABC transporter-like protein 1748888..1749652 Polaromonas naphthalenivorans CJ2 4689232 YP_981890.1 CDS Pnap_1655 NC_008781.1 1749693 1750595 D KEGG: pol:Bpro_1853 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1749693..1750595 Polaromonas naphthalenivorans CJ2 4689287 YP_981891.1 CDS Pnap_1656 NC_008781.1 1750610 1751503 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_1854 xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein 1750610..1751503 Polaromonas naphthalenivorans CJ2 4689487 YP_981892.1 CDS Pnap_1657 NC_008781.1 1751535 1752749 D TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: pol:Bpro_1855 3-carboxy-cis,cis-muconate cycloisomerase; 3-carboxy-cis,cis-muconate cycloisomerase 1751535..1752749 Polaromonas naphthalenivorans CJ2 4689664 YP_981893.1 CDS Pnap_1658 NC_008781.1 1752757 1753860 D PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pol:Bpro_4498 oxidoreductase-like; oxidoreductase domain-containing protein 1752757..1753860 Polaromonas naphthalenivorans CJ2 4689662 YP_981894.1 CDS Pnap_1659 NC_008781.1 1753876 1754820 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0978 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1753876..1754820) Polaromonas naphthalenivorans CJ2 4690064 YP_981895.1 CDS Pnap_1660 NC_008781.1 1754898 1756430 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0977 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1754898..1756430 Polaromonas naphthalenivorans CJ2 4690086 YP_981896.1 CDS Pnap_1661 NC_008781.1 1756425 1757069 R PFAM: protein of unknown function DUF159; KEGG: rfr:Rfer_4344 protein of unknown function DUF159; hypothetical protein complement(1756425..1757069) Polaromonas naphthalenivorans CJ2 4690129 YP_981897.1 CDS Pnap_1662 NC_008781.1 1757363 1758652 D PFAM: metallophosphoesterase; KEGG: gox:GOX1019 putative exonuclease; metallophosphoesterase 1757363..1758652 Polaromonas naphthalenivorans CJ2 4690095 YP_981898.1 CDS Pnap_1663 NC_008781.1 1758649 1762254 D KEGG: tfu:Tfu_0999 hypothetical protein; hypothetical protein 1758649..1762254 Polaromonas naphthalenivorans CJ2 4689952 YP_981899.1 CDS Pnap_1664 NC_008781.1 1762377 1762658 D KEGG: pol:Bpro_2267 hypothetical protein; hypothetical protein 1762377..1762658 Polaromonas naphthalenivorans CJ2 4689850 YP_981900.1 CDS Pnap_1665 NC_008781.1 1762866 1763180 D KEGG: dar:Daro_3136 cytochrome c, class I; class I cytochrome c 1762866..1763180 Polaromonas naphthalenivorans CJ2 4688916 YP_981901.1 CDS Pnap_1666 NC_008781.1 1763185 1764477 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reu:Reut_A3261 twin-arginine translocation pathway signal; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1763185..1764477 Polaromonas naphthalenivorans CJ2 4689129 YP_981902.1 CDS Pnap_1668 NC_008781.1 1765338 1765844 D KEGG: dar:Daro_3132 hypothetical protein; hypothetical protein 1765338..1765844 Polaromonas naphthalenivorans CJ2 4689471 YP_981903.1 CDS Pnap_1669 NC_008781.1 1765884 1766195 D KEGG: pol:Bpro_2628 hypothetical protein; hypothetical protein 1765884..1766195 Polaromonas naphthalenivorans CJ2 4689753 YP_981904.1 CDS Pnap_1670 NC_008781.1 1766257 1768074 D KEGG: pol:Bpro_2268 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 1766257..1768074 Polaromonas naphthalenivorans CJ2 4689712 YP_981905.1 CDS Pnap_1671 NC_008781.1 1768152 1768484 D PFAM: conserved hypothetical protein 103; KEGG: pol:Bpro_2269 conserved hypothetical protein 103; hypothetical protein 1768152..1768484 Polaromonas naphthalenivorans CJ2 4689737 YP_981906.1 CDS recR NC_008781.1 1768513 1769139 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1768513..1769139 Polaromonas naphthalenivorans CJ2 4689644 YP_981907.1 CDS Pnap_1673 NC_008781.1 1769167 1771212 R KEGG: ppr:PBPRA2182 hypothetical protein; hypothetical protein complement(1769167..1771212) Polaromonas naphthalenivorans CJ2 4689303 YP_981908.1 CDS Pnap_1674 NC_008781.1 1771358 1771690 D KEGG: pol:Bpro_2271 membrane protein-like; hypothetical protein 1771358..1771690 Polaromonas naphthalenivorans CJ2 4689586 YP_981909.1 CDS Pnap_1675 NC_008781.1 1771696 1772811 D KEGG: pol:Bpro_2272 putative signal peptide protein; putative signal peptide protein 1771696..1772811 Polaromonas naphthalenivorans CJ2 4689587 YP_981910.1 CDS Pnap_1676 NC_008781.1 1772979 1773131 D KEGG: pol:Bpro_2277 hypothetical protein; hypothetical protein 1772979..1773131 Polaromonas naphthalenivorans CJ2 4689523 YP_981911.1 CDS Pnap_1677 NC_008781.1 1773175 1774749 R PFAM: Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: pol:Bpro_2278 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit complement(1773175..1774749) Polaromonas naphthalenivorans CJ2 4689570 YP_981912.1 CDS Pnap_1678 NC_008781.1 1774746 1775516 R PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_1462 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase complement(1774746..1775516) Polaromonas naphthalenivorans CJ2 4689452 YP_981913.1 CDS Pnap_1679 NC_008781.1 1775529 1776350 D PFAM: Methyltransferase type 11; KEGG: pol:Bpro_2280 hypothetical protein; type 11 methyltransferase 1775529..1776350 Polaromonas naphthalenivorans CJ2 4689467 YP_981914.1 CDS rnhA NC_008781.1 1776416 1776901 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1776416..1776901 Polaromonas naphthalenivorans CJ2 4689372 YP_981915.1 CDS Pnap_1681 NC_008781.1 1777086 1778390 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2282 secretion protein HlyD; RND family efflux transporter MFP subunit 1777086..1778390 Polaromonas naphthalenivorans CJ2 4689412 YP_981916.1 CDS Pnap_1682 NC_008781.1 1778437 1781631 D PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2283 acriflavin resistance protein; acriflavin resistance protein 1778437..1781631 Polaromonas naphthalenivorans CJ2 4689844 YP_981917.1 CDS Pnap_1683 NC_008781.1 1781653 1783332 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sde:Sde_0299 hypothetical protein; peptidase S8/S53 subtilisin kexin sedolisin complement(1781653..1783332) Polaromonas naphthalenivorans CJ2 4689010 YP_981918.1 CDS Pnap_1684 NC_008781.1 1783332 1784084 R KEGG: mlo:mll5117 hypothetical protein; hypothetical protein complement(1783332..1784084) Polaromonas naphthalenivorans CJ2 4689654 YP_981919.1 CDS Pnap_1685 NC_008781.1 1784081 1784698 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nha:Nham_2659 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor complement(1784081..1784698) Polaromonas naphthalenivorans CJ2 4688692 YP_981920.1 CDS Pnap_1686 NC_008781.1 1785118 1785684 D KEGG: cya:CYA_0242 hypothetical protein; hypothetical protein 1785118..1785684 Polaromonas naphthalenivorans CJ2 4688836 YP_981921.1 CDS Pnap_1687 NC_008781.1 1785767 1787113 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: pol:Bpro_2286 MoeA-like, domain I and II; molybdenum cofactor synthesis domain-containing protein complement(1785767..1787113) Polaromonas naphthalenivorans CJ2 4689119 YP_981922.1 CDS mobA NC_008781.1 1787110 1787754 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(1787110..1787754) Polaromonas naphthalenivorans CJ2 4688403 YP_981923.1 CDS moaA NC_008781.1 1787916 1789046 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(1787916..1789046) Polaromonas naphthalenivorans CJ2 4688490 YP_981924.1 CDS Pnap_1690 NC_008781.1 1789189 1790337 R KEGG: pol:Bpro_1617 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1789189..1790337) Polaromonas naphthalenivorans CJ2 4688359 YP_981925.1 CDS Pnap_1691 NC_008781.1 1790552 1791988 R PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2290 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase complement(1790552..1791988) Polaromonas naphthalenivorans CJ2 4688437 YP_981926.1 CDS Pnap_1692 NC_008781.1 1792034 1792492 R KEGG: pol:Bpro_3272 hypothetical protein; hypothetical protein complement(1792034..1792492) Polaromonas naphthalenivorans CJ2 4688972 YP_981927.1 CDS Pnap_1693 NC_008781.1 1792507 1792878 R PFAM: response regulator receiver; KEGG: pol:Bpro_3271 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(1792507..1792878) Polaromonas naphthalenivorans CJ2 4688321 YP_981928.1 CDS Pnap_1694 NC_008781.1 1792923 1795070 R PFAM: ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; KEGG: pol:Bpro_3270 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(1792923..1795070) Polaromonas naphthalenivorans CJ2 4688457 YP_981929.1 CDS Pnap_1695 NC_008781.1 1795471 1795956 R PFAM: thioesterase superfamily protein; KEGG: eba:ebA6092 conserved hypothetical protein, putative thioesterase; thioesterase superfamily protein complement(1795471..1795956) Polaromonas naphthalenivorans CJ2 4688416 YP_981930.1 CDS Pnap_1696 NC_008781.1 1796137 1797120 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0434 uncharacterized protein UPF0065; hypothetical protein complement(1796137..1797120) Polaromonas naphthalenivorans CJ2 4687928 YP_981931.1 CDS Pnap_1697 NC_008781.1 1797177 1797893 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_2296 dimethylmenaquinone methyltransferase; hypothetical protein complement(1797177..1797893) Polaromonas naphthalenivorans CJ2 4687878 YP_981932.1 CDS Pnap_1698 NC_008781.1 1797909 1799648 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(1797909..1799648) Polaromonas naphthalenivorans CJ2 4687874 YP_981933.1 CDS Pnap_1699 NC_008781.1 1799994 1801439 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5481 HNH endonuclease; HNH endonuclease 1799994..1801439 Polaromonas naphthalenivorans CJ2 4688166 YP_981934.1 CDS Pnap_1700 NC_008781.1 1801436 1802152 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bja:blr0382 transcriptional regulatory protein; GntR family transcriptional regulator 1801436..1802152 Polaromonas naphthalenivorans CJ2 4688097 YP_981935.1 CDS hppA NC_008781.1 1802294 1804534 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(1802294..1804534) Polaromonas naphthalenivorans CJ2 4687787 YP_981936.1 CDS Pnap_1702 NC_008781.1 1804796 1805338 D PFAM: Inorganic pyrophosphatase; KEGG: pol:Bpro_2300 inorganic diphosphatase; inorganic diphosphatase 1804796..1805338 Polaromonas naphthalenivorans CJ2 4687722 YP_981937.1 CDS Pnap_1703 NC_008781.1 1805475 1809701 D KEGG: reu:Reut_B4915 protein-glutamate methylesterase, two-component system, chemotaxis family, response regulator CheB / chemotaxis protein methyltransferase CheR; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase with CheB and CheR activity 1805475..1809701 Polaromonas naphthalenivorans CJ2 4687952 YP_981938.1 CDS Pnap_1704 NC_008781.1 1809797 1810504 D hypothetical protein 1809797..1810504 Polaromonas naphthalenivorans CJ2 4687575 YP_981939.1 CDS Pnap_1705 NC_008781.1 1810528 1811382 R KEGG: pol:Bpro_2302 hypothetical protein; hypothetical protein complement(1810528..1811382) Polaromonas naphthalenivorans CJ2 4687680 YP_981940.1 CDS Pnap_1706 NC_008781.1 1811514 1812350 R KEGG: pol:Bpro_2305 hypothetical protein; hypothetical protein complement(1811514..1812350) Polaromonas naphthalenivorans CJ2 4688366 YP_981941.1 CDS Pnap_1707 NC_008781.1 1812389 1812718 R KEGG: pol:Bpro_2307 hypothetical protein; hypothetical protein complement(1812389..1812718) Polaromonas naphthalenivorans CJ2 4687530 YP_981942.1 CDS Pnap_1708 NC_008781.1 1812715 1813971 R PFAM: protein of unknown function DUF482; KEGG: pol:Bpro_2308 protein of unknown function DUF482; hypothetical protein complement(1812715..1813971) Polaromonas naphthalenivorans CJ2 4687538 YP_981943.1 CDS Pnap_1709 NC_008781.1 1814007 1815704 D KEGG: pol:Bpro_2309 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; NAD+ synthetase 1814007..1815704 Polaromonas naphthalenivorans CJ2 4687499 YP_981944.1 CDS Pnap_1710 NC_008781.1 1815733 1816134 D PFAM: nitrogen regulatory protein P-II; KEGG: pol:Bpro_2310 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 1815733..1816134 Polaromonas naphthalenivorans CJ2 4686986 YP_981945.1 CDS Pnap_1711 NC_008781.1 1816141 1816752 R PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_2311 conserved hypothetical protein 730; hypothetical protein complement(1816141..1816752) Polaromonas naphthalenivorans CJ2 4686969 YP_981946.1 CDS Pnap_1712 NC_008781.1 1816749 1817162 R PFAM: diacylglycerol kinase; KEGG: pol:Bpro_2312 diacylglycerol kinase; diacylglycerol kinase complement(1816749..1817162) Polaromonas naphthalenivorans CJ2 4687465 YP_981947.1 CDS Pnap_1713 NC_008781.1 1817191 1817691 R PFAM: RDD domain containing protein; KEGG: pol:Bpro_2313 hypothetical protein; RDD domain-containing protein complement(1817191..1817691) Polaromonas naphthalenivorans CJ2 4687061 YP_981948.1 CDS Pnap_1714 NC_008781.1 1817816 1818550 R KEGG: pol:Bpro_2314 putative transmembrane protein; hypothetical protein complement(1817816..1818550) Polaromonas naphthalenivorans CJ2 4687009 YP_981949.1 CDS Pnap_1715 NC_008781.1 1818547 1818993 R KEGG: pol:Bpro_2315 putative transmembrane protein; hypothetical protein complement(1818547..1818993) Polaromonas naphthalenivorans CJ2 4687289 YP_981950.1 CDS Pnap_1716 NC_008781.1 1818990 1819556 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 complement(1818990..1819556) Polaromonas naphthalenivorans CJ2 4686954 YP_981951.1 CDS Pnap_1717 NC_008781.1 1819887 1821665 D acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 3 catalytic subunit 1819887..1821665 Polaromonas naphthalenivorans CJ2 4686899 YP_981952.1 CDS ilvH NC_008781.1 1821774 1822265 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1821774..1822265 Polaromonas naphthalenivorans CJ2 4686907 YP_981953.1 CDS Pnap_1719 NC_008781.1 1822336 1823352 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1822336..1823352 Polaromonas naphthalenivorans CJ2 4686931 YP_981954.1 CDS Pnap_1720 NC_008781.1 1823586 1824398 D KEGG: pol:Bpro_2320 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 1823586..1824398 Polaromonas naphthalenivorans CJ2 4687248 YP_981955.1 CDS Pnap_1721 NC_008781.1 1824667 1826205 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1824667..1826205 Polaromonas naphthalenivorans CJ2 4686752 YP_981956.1 CDS Pnap_1722 NC_008781.1 1826401 1827492 D PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: pol:Bpro_2323 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 1826401..1827492 Polaromonas naphthalenivorans CJ2 4686705 YP_981957.1 CDS Pnap_1723 NC_008781.1 1827624 1828403 R PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2324 transcriptional regulator, IclR family; regulatory proteins, IclR complement(1827624..1828403) Polaromonas naphthalenivorans CJ2 4686728 YP_981958.1 CDS Pnap_1724 NC_008781.1 1828494 1829255 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(1828494..1829255) Polaromonas naphthalenivorans CJ2 4686810 YP_981959.1 CDS aat NC_008781.1 1829252 1830034 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(1829252..1830034) Polaromonas naphthalenivorans CJ2 4686436 YP_981960.1 CDS Pnap_1726 NC_008781.1 1830084 1830713 R TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_1963 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase complement(1830084..1830713) Polaromonas naphthalenivorans CJ2 4686609 YP_981961.1 CDS Pnap_1727 NC_008781.1 1830752 1832269 R PFAM: protein of unknown function DUF853, NPT hydrolase putative; SMART: AAA ATPase; KEGG: pol:Bpro_1966 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein complement(1830752..1832269) Polaromonas naphthalenivorans CJ2 4686640 YP_981962.1 CDS Pnap_1728 NC_008781.1 1832364 1833089 D PFAM: protein of unknown function DUF28; KEGG: pol:Bpro_1967 protein of unknown function DUF28; hypothetical protein 1832364..1833089 Polaromonas naphthalenivorans CJ2 4686940 YP_981963.1 CDS Pnap_1729 NC_008781.1 1833128 1834420 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1833128..1834420 Polaromonas naphthalenivorans CJ2 4686378 YP_981964.1 CDS Pnap_1730 NC_008781.1 1834430 1835353 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1834430..1835353 Polaromonas naphthalenivorans CJ2 4687031 YP_981965.1 CDS Pnap_1732 NC_008781.1 1835732 1836601 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pol:Bpro_1972 iojap-related protein; iojap family protein 1835732..1836601 Polaromonas naphthalenivorans CJ2 4689230 YP_981966.1 CDS Pnap_1733 NC_008781.1 1836598 1837065 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1836598..1837065 Polaromonas naphthalenivorans CJ2 4687038 YP_981967.1 CDS Pnap_1734 NC_008781.1 1837087 1837689 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1837087..1837689 Polaromonas naphthalenivorans CJ2 4689552 YP_981968.1 CDS Pnap_1735 NC_008781.1 1837708 1839207 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pol:Bpro_1975 ribonuclease, Rne/Rng family; ribonuclease 1837708..1839207 Polaromonas naphthalenivorans CJ2 4687518 YP_981969.1 CDS Pnap_1736 NC_008781.1 1839227 1839976 D PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1976 polysaccharide deacetylase; polysaccharide deacetylase 1839227..1839976 Polaromonas naphthalenivorans CJ2 4689693 YP_981970.1 CDS Pnap_1737 NC_008781.1 1839973 1841184 D PFAM: glycosyl transferase, group 1; KEGG: pol:Bpro_1977 glycosyl transferase, group 1; group 1 glycosyl transferase 1839973..1841184 Polaromonas naphthalenivorans CJ2 4686675 YP_981971.1 CDS Pnap_1738 NC_008781.1 1841281 1841481 D KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 1841281..1841481 Polaromonas naphthalenivorans CJ2 4687901 YP_981972.1 CDS Pnap_1739 NC_008781.1 1841486 1842523 R KEGG: xom:XOO_3993 ISXo7 transposase; ISXo7 transposase complement(1841486..1842523) Polaromonas naphthalenivorans CJ2 4688523 YP_981973.1 CDS Pnap_1740 NC_008781.1 1842594 1843079 D KEGG: ppr:PBPRB1712 hypothetical transposase; putative transposase 1842594..1843079 Polaromonas naphthalenivorans CJ2 4689065 YP_981974.1 CDS Pnap_1743 NC_008781.1 1845660 1846151 D KEGG: eba:p2A365 transposase, fragment; transposase 1845660..1846151 Polaromonas naphthalenivorans CJ2 4690055 YP_981975.1 CDS Pnap_1744 NC_008781.1 1846260 1847615 R KEGG: bja:blr1916 putative transposase; putative transposase complement(1846260..1847615) Polaromonas naphthalenivorans CJ2 4689282 YP_981976.1 CDS Pnap_1745 NC_008781.1 1847696 1847941 D KEGG: mac:MA0437 transposase; transposase 1847696..1847941 Polaromonas naphthalenivorans CJ2 4689391 YP_981977.1 CDS Pnap_1746 NC_008781.1 1847997 1848971 D PFAM: Insertion element protein; KEGG: neu:NE1698 hypothetical protein; insertion element protein 1847997..1848971 Polaromonas naphthalenivorans CJ2 4689555 YP_981978.1 CDS Pnap_1747 NC_008781.1 1855409 1856449 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bxe:Bxe_C0485 putative transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(1855409..1856449) Polaromonas naphthalenivorans CJ2 4688853 YP_981979.1 CDS Pnap_1748 NC_008781.1 1856821 1857888 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(1856821..1857888) Polaromonas naphthalenivorans CJ2 4688495 YP_981980.1 CDS Pnap_1749 NC_008781.1 1858093 1859373 R PFAM: transposase, IS4 family protein; KEGG: bxe:Bxe_C0019 putative transposase; transposase, IS4 family protein complement(1858093..1859373) Polaromonas naphthalenivorans CJ2 4689171 YP_981981.1 CDS Pnap_1750 NC_008781.1 1859498 1860886 D PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region; integrase catalytic subunit 1859498..1860886 Polaromonas naphthalenivorans CJ2 4689775 YP_981982.1 CDS Pnap_1751 NC_008781.1 1861100 1862182 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase; transposase IS116/IS110/IS902 family protein 1861100..1862182 Polaromonas naphthalenivorans CJ2 4687855 YP_981983.1 CDS Pnap_1752 NC_008781.1 1862292 1863629 R KEGG: sgl:SG2354 hypothetical protein; hypothetical protein complement(1862292..1863629) Polaromonas naphthalenivorans CJ2 4687228 YP_981984.1 CDS Pnap_1753 NC_008781.1 1863929 1864276 R KEGG: ccr:CC2592 ISCc1, transposase OrfB; ISCc1, transposase OrfB complement(1863929..1864276) Polaromonas naphthalenivorans CJ2 4690038 YP_981985.1 CDS Pnap_1754 NC_008781.1 1864249 1864728 R KEGG: lpl:lp_3570 transposase (putative); transposase complement(1864249..1864728) Polaromonas naphthalenivorans CJ2 4686352 YP_981986.1 CDS Pnap_1755 NC_008781.1 1864794 1865381 R PFAM: Peptidoglycan-binding LysM; KEGG: rme:Rmet_0917 peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(1864794..1865381) Polaromonas naphthalenivorans CJ2 4687244 YP_981987.1 CDS Pnap_1756 NC_008781.1 1865432 1866691 R PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2697 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase complement(1865432..1866691) Polaromonas naphthalenivorans CJ2 4688636 YP_981988.1 CDS Pnap_1757 NC_008781.1 1866807 1868159 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(1866807..1868159) Polaromonas naphthalenivorans CJ2 4689548 YP_981989.1 CDS rpsB NC_008781.1 1868306 1869058 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1868306..1869058 Polaromonas naphthalenivorans CJ2 4690005 YP_981990.1 CDS tsf NC_008781.1 1869188 1870108 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1869188..1870108 Polaromonas naphthalenivorans CJ2 4689441 YP_981991.1 CDS pyrH NC_008781.1 1870170 1870880 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1870170..1870880 Polaromonas naphthalenivorans CJ2 4687629 YP_981992.1 CDS frr NC_008781.1 1870953 1871513 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1870953..1871513 Polaromonas naphthalenivorans CJ2 4688066 YP_981993.1 CDS Pnap_1762 NC_008781.1 1871542 1872264 D KEGG: pol:Bpro_2691 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1871542..1872264 Polaromonas naphthalenivorans CJ2 4686435 YP_981994.1 CDS Pnap_1763 NC_008781.1 1872282 1873112 D PFAM: phosphatidate cytidylyltransferase; KEGG: pol:Bpro_2690 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1872282..1873112 Polaromonas naphthalenivorans CJ2 4686077 YP_981995.1 CDS Pnap_1764 NC_008781.1 1873138 1874325 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1873138..1874325 Polaromonas naphthalenivorans CJ2 4686134 YP_981996.1 CDS Pnap_1765 NC_008781.1 1874327 1875703 D TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: pol:Bpro_2688 peptidase M50, putative membrane-associated zinc metallopeptidase; putative membrane-associated zinc metalloprotease 1874327..1875703 Polaromonas naphthalenivorans CJ2 4686221 YP_981997.1 CDS Pnap_1766 NC_008781.1 1875718 1878018 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pol:Bpro_2687 surface antigen (D15); surface antigen (D15) 1875718..1878018 Polaromonas naphthalenivorans CJ2 4687264 YP_981998.1 CDS Pnap_1767 NC_008781.1 1878018 1878524 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: pol:Bpro_2686 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 1878018..1878524 Polaromonas naphthalenivorans CJ2 4688007 YP_981999.1 CDS lpxD NC_008781.1 1878572 1879639 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1878572..1879639 Polaromonas naphthalenivorans CJ2 4687777 YP_982000.1 CDS fabZ NC_008781.1 1879636 1880076 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1879636..1880076 Polaromonas naphthalenivorans CJ2 4687851 YP_982001.1 CDS Pnap_1770 NC_008781.1 1880088 1880900 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1880088..1880900 Polaromonas naphthalenivorans CJ2 4688443 YP_982002.1 CDS lpxB NC_008781.1 1880908 1882104 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1880908..1882104 Polaromonas naphthalenivorans CJ2 4689427 YP_982003.1 CDS rnhB NC_008781.1 1882076 1882702 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1882076..1882702 Polaromonas naphthalenivorans CJ2 4689222 YP_982004.1 CDS Pnap_1773 NC_008781.1 1882699 1883478 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_2680 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1882699..1883478 Polaromonas naphthalenivorans CJ2 4689082 YP_982005.1 CDS Pnap_1774 NC_008781.1 1883634 1884815 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1883634..1884815 Polaromonas naphthalenivorans CJ2 4689857 YP_982006.1 CDS Pnap_1775 NC_008781.1 1884808 1888050 D TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: pol:Bpro_2678 carbamoyl-phosphate synthase, large subunit; carbamoyl-phosphate synthase large subunit 1884808..1888050 Polaromonas naphthalenivorans CJ2 4689047 YP_982007.1 CDS Pnap_1776 NC_008781.1 1888171 1888647 D TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_2677 GreA/GreB family elongation factor; transcription elongation factor GreA 1888171..1888647 Polaromonas naphthalenivorans CJ2 4687899 YP_982008.1 CDS Pnap_1777 NC_008781.1 1888647 1889087 D KEGG: pol:Bpro_2676 putative transmembrane protein; hypothetical protein 1888647..1889087 Polaromonas naphthalenivorans CJ2 4690200 YP_982009.1 CDS Pnap_1778 NC_008781.1 1889136 1889981 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1889136..1889981) Polaromonas naphthalenivorans CJ2 4686090 YP_982010.1 CDS Pnap_1779 NC_008781.1 1890068 1890694 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_2674 two component transcriptional regulator, LuxR family; response regulator receiver protein complement(1890068..1890694) Polaromonas naphthalenivorans CJ2 4687036 YP_982011.1 CDS Pnap_1780 NC_008781.1 1890741 1893311 R KEGG: pol:Bpro_2673 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(1890741..1893311) Polaromonas naphthalenivorans CJ2 4686813 YP_982012.1 CDS aceE NC_008781.1 1893611 1896340 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1893611..1896340 Polaromonas naphthalenivorans CJ2 4687011 YP_982013.1 CDS Pnap_1782 NC_008781.1 1896383 1898089 D KEGG: pol:Bpro_2671 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 1896383..1898089 Polaromonas naphthalenivorans CJ2 4687542 YP_982014.1 CDS Pnap_1783 NC_008781.1 1898086 1898676 D PFAM: 20S proteasome, A and B subunits; KEGG: pol:Bpro_2670 20S proteasome, A and B subunits; 20S proteasome subunits A/B 1898086..1898676 Polaromonas naphthalenivorans CJ2 4688446 YP_982015.1 CDS Pnap_1784 NC_008781.1 1898673 1900538 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pol:Bpro_2669 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 1898673..1900538 Polaromonas naphthalenivorans CJ2 4690151 YP_982016.1 CDS Pnap_1785 NC_008781.1 1900715 1901245 R KEGG: bxe:Bxe_B1463 hypothetical protein; hypothetical protein complement(1900715..1901245) Polaromonas naphthalenivorans CJ2 4687788 YP_982017.1 CDS Pnap_1786 NC_008781.1 1901287 1901733 D PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rfr:Rfer_2214 dihydrolipoamide dehydrogenase; pyridine nucleotide-disulfide oxidoreductase dimerisation region 1901287..1901733 Polaromonas naphthalenivorans CJ2 4686180 YP_982018.1 CDS Pnap_1787 NC_008781.1 1901835 1902443 R PFAM: NLP/P60 protein; KEGG: pol:Bpro_2667 peptidace C40 NLP/P60; NLP/P60 protein complement(1901835..1902443) Polaromonas naphthalenivorans CJ2 4686156 YP_982019.1 CDS Pnap_1788 NC_008781.1 1902654 1903829 D PFAM: NHL repeat containing protein; glucose sorbosone dehydrogenase; KEGG: pol:Bpro_2666 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 1902654..1903829 Polaromonas naphthalenivorans CJ2 4689279 YP_982020.1 CDS Pnap_1789 NC_008781.1 1903901 1904704 D KEGG: pol:Bpro_2659 ABC-type transport system ipermease component; ABC transporter permease 1903901..1904704 Polaromonas naphthalenivorans CJ2 4687363 YP_982021.1 CDS Pnap_1790 NC_008781.1 1904723 1905754 D PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_2658 ABC-type transport system periplasmic component; hypothetical protein 1904723..1905754 Polaromonas naphthalenivorans CJ2 4688486 YP_982022.1 CDS Pnap_1791 NC_008781.1 1905751 1906464 D KEGG: pol:Bpro_2657 hypothetical protein; hypothetical protein 1905751..1906464 Polaromonas naphthalenivorans CJ2 4686685 YP_982023.1 CDS Pnap_1792 NC_008781.1 1906461 1906763 D KEGG: pol:Bpro_2656 hypothetical protein; hypothetical protein 1906461..1906763 Polaromonas naphthalenivorans CJ2 4688387 YP_982024.1 CDS Pnap_1793 NC_008781.1 1906803 1907021 R KEGG: pol:Bpro_2655 hypothetical protein; hypothetical protein complement(1906803..1907021) Polaromonas naphthalenivorans CJ2 4688761 YP_982025.1 CDS Pnap_1794 NC_008781.1 1907260 1907784 D KEGG: pol:Bpro_2652 hypothetical protein; hypothetical protein 1907260..1907784 Polaromonas naphthalenivorans CJ2 4687672 YP_982026.1 CDS Pnap_1795 NC_008781.1 1907781 1909058 D KEGG: pol:Bpro_2651 putative heat shock protein; putative heat shock protein 1907781..1909058 Polaromonas naphthalenivorans CJ2 4690017 YP_982027.1 CDS Pnap_1796 NC_008781.1 1909102 1909881 R TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; glutaredoxin; Redoxin domain protein; KEGG: ava:Ava_4981 glutaredoxin-like region; glutaredoxin family protein complement(1909102..1909881) Polaromonas naphthalenivorans CJ2 4689075 YP_982028.1 CDS Pnap_1797 NC_008781.1 1910038 1910532 D KEGG: pol:Bpro_1203 hypothetical protein; hypothetical protein 1910038..1910532 Polaromonas naphthalenivorans CJ2 4686198 YP_982029.1 CDS Pnap_1798 NC_008781.1 1910653 1911135 D KEGG: pol:Bpro_2648 hypothetical protein; hypothetical protein 1910653..1911135 Polaromonas naphthalenivorans CJ2 4686418 YP_982030.1 CDS Pnap_1799 NC_008781.1 1911362 1911958 D KEGG: pol:Bpro_3875 hypothetical protein; hypothetical protein 1911362..1911958 Polaromonas naphthalenivorans CJ2 4689499 YP_982031.1 CDS Pnap_1800 NC_008781.1 1912039 1912662 D PFAM: isochorismatase hydrolase; KEGG: pol:Bpro_2647 isochorismatase hydrolase; isochorismatase hydrolase 1912039..1912662 Polaromonas naphthalenivorans CJ2 4687935 YP_982032.1 CDS Pnap_1801 NC_008781.1 1912698 1913099 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_2640 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1912698..1913099) Polaromonas naphthalenivorans CJ2 4686539 YP_982033.1 CDS Pnap_1802 NC_008781.1 1913168 1913593 R KEGG: pol:Bpro_2637 hypothetical protein; hypothetical protein complement(1913168..1913593) Polaromonas naphthalenivorans CJ2 4686528 YP_982034.1 CDS Pnap_1803 NC_008781.1 1913691 1915421 R PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3826 ABC transporter related; ABC transporter complement(1913691..1915421) Polaromonas naphthalenivorans CJ2 4686254 YP_982035.1 CDS prpE NC_008781.1 1915717 1917630 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 1915717..1917630 Polaromonas naphthalenivorans CJ2 4687608 YP_982036.1 CDS Pnap_1805 NC_008781.1 1917738 1918247 R KEGG: pol:Bpro_5569 ISSod10, transposase OrfB; ISSod10, transposase OrfB complement(1917738..1918247) Polaromonas naphthalenivorans CJ2 4688308 YP_982037.1 CDS Pnap_1806 NC_008781.1 1918276 1918647 R KEGG: pol:Bpro_5570 transposase and inactivated derivative; transposase and inactivated derivative complement(1918276..1918647) Polaromonas naphthalenivorans CJ2 4688949 YP_982038.1 CDS Pnap_1807 NC_008781.1 1918679 1919200 R KEGG: pol:Bpro_1991 hypothetical protein; hypothetical protein complement(1918679..1919200) Polaromonas naphthalenivorans CJ2 4689328 YP_982039.1 CDS Pnap_1808 NC_008781.1 1919309 1921327 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1992 ABC transporter related; ABC transporter-like protein complement(1919309..1921327) Polaromonas naphthalenivorans CJ2 4690065 YP_982040.1 CDS Pnap_1809 NC_008781.1 1921411 1922307 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1921411..1922307) Polaromonas naphthalenivorans CJ2 4688794 YP_982041.1 CDS Pnap_1810 NC_008781.1 1922304 1923524 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1922304..1923524) Polaromonas naphthalenivorans CJ2 4687659 YP_982042.1 CDS Pnap_1811 NC_008781.1 1923532 1924674 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_1995 twitching motility protein; twitching motility protein complement(1923532..1924674) Polaromonas naphthalenivorans CJ2 4688663 YP_982043.1 CDS dapD NC_008781.1 1924731 1925558 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(1924731..1925558) Polaromonas naphthalenivorans CJ2 4689887 YP_982044.1 CDS Pnap_1813 NC_008781.1 1925570 1926778 R catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase complement(1925570..1926778) Polaromonas naphthalenivorans CJ2 4687749 YP_982045.1 CDS Pnap_1814 NC_008781.1 1927165 1930710 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: pol:Bpro_2594 chromosome segregation protein SMC; chromosome segregation protein SMC 1927165..1930710 Polaromonas naphthalenivorans CJ2 4687255 YP_982046.1 CDS Pnap_1815 NC_008781.1 1930726 1931823 D SMART: ZipA, C-terminal FtsZ-binding region; KEGG: pol:Bpro_2593 hypothetical protein; ZipA protein 1930726..1931823 Polaromonas naphthalenivorans CJ2 4687050 YP_982047.1 CDS Pnap_1816 NC_008781.1 1931896 1934019 D KEGG: pol:Bpro_2592 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like; DNA ligase 1931896..1934019 Polaromonas naphthalenivorans CJ2 4689447 YP_982048.1 CDS Pnap_1817 NC_008781.1 1934031 1934450 R PFAM: protein of unknown function DUF454; KEGG: xac:XAC0632 hypothetical protein; hypothetical protein complement(1934031..1934450) Polaromonas naphthalenivorans CJ2 4688072 YP_982049.1 CDS Pnap_1818 NC_008781.1 1934489 1935028 D KEGG: pol:Bpro_2590 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 1934489..1935028 Polaromonas naphthalenivorans CJ2 4688411 YP_982050.1 CDS Pnap_1819 NC_008781.1 1935055 1937649 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(1935055..1937649) Polaromonas naphthalenivorans CJ2 4686355 YP_982051.1 CDS Pnap_1820 NC_008781.1 1937706 1938539 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pol:Bpro_2587 methionine aminopeptidase, type I; methionine aminopeptidase complement(1937706..1938539) Polaromonas naphthalenivorans CJ2 4686989 YP_982052.1 CDS Pnap_1821 NC_008781.1 1938768 1942790 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1938768..1942790 Polaromonas naphthalenivorans CJ2 4686717 YP_982053.1 CDS Pnap_1822 NC_008781.1 1942861 1943106 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rco:RC1319 hypothetical protein; prevent-host-death family protein 1942861..1943106 Polaromonas naphthalenivorans CJ2 4686749 YP_982054.1 CDS Pnap_1823 NC_008781.1 1943103 1943531 D PFAM: PilT protein domain protein; KEGG: gvi:glr2382 plasmid stability protein StbB homolog; PilT domain-containing protein 1943103..1943531 Polaromonas naphthalenivorans CJ2 4686780 YP_982055.1 CDS Pnap_1824 NC_008781.1 1943648 1944124 R KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 complement(1943648..1944124) Polaromonas naphthalenivorans CJ2 4686817 YP_982056.1 CDS Pnap_1825 NC_008781.1 1944186 1944602 R KEGG: ana:alr1858 transposase; hypothetical protein complement(1944186..1944602) Polaromonas naphthalenivorans CJ2 4686868 YP_982057.1 CDS Pnap_1826 NC_008781.1 1945022 1945921 R PFAM: Aldose 1-epimerase; KEGG: xom:XOO_0261 transglycolase; aldose 1-epimerase complement(1945022..1945921) Polaromonas naphthalenivorans CJ2 4687652 YP_982058.1 CDS Pnap_1827 NC_008781.1 1945960 1946649 R PFAM: OmpW family protein; KEGG: pha:PSHAa2155 protein W (OmpW); OmpW family protein complement(1945960..1946649) Polaromonas naphthalenivorans CJ2 4687361 YP_982059.1 CDS Pnap_1828 NC_008781.1 1946669 1948285 R KEGG: bxe:Bxe_B0552 hypothetical protein; hypothetical protein complement(1946669..1948285) Polaromonas naphthalenivorans CJ2 4687631 YP_982060.1 CDS Pnap_1829 NC_008781.1 1948433 1949167 D PFAM: protein of unknown function DUF1624; KEGG: rfr:Rfer_2413 protein of unknown function DUF1624; hypothetical protein 1948433..1949167 Polaromonas naphthalenivorans CJ2 4688513 YP_982061.1 CDS Pnap_1830 NC_008781.1 1949301 1951847 D PFAM: ThiJ/PfpI domain protein; Catalase domain protein; KEGG: nmu:Nmul_A1515 catalase; catalase 1949301..1951847 Polaromonas naphthalenivorans CJ2 4688107 YP_982062.1 CDS Pnap_1831 NC_008781.1 1951911 1952702 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_2585 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1951911..1952702) Polaromonas naphthalenivorans CJ2 4688239 YP_982063.1 CDS Pnap_1832 NC_008781.1 1952788 1953087 R PFAM: BolA family protein; KEGG: pol:Bpro_2584 BolA-like protein; BolA family protein complement(1952788..1953087) Polaromonas naphthalenivorans CJ2 4688261 YP_982064.1 CDS Pnap_1833 NC_008781.1 1953201 1954307 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: noc:Noc_2198 transposase, IS605 OrfB; IS605 family transposase OrfB 1953201..1954307 Polaromonas naphthalenivorans CJ2 4688429 YP_982065.1 CDS Pnap_1834 NC_008781.1 1954320 1954946 R PFAM: Intracellular septation protein A; KEGG: pol:Bpro_2583 intracellular septation protein A; intracellular septation protein A complement(1954320..1954946) Polaromonas naphthalenivorans CJ2 4689038 YP_982066.1 CDS Pnap_1835 NC_008781.1 1955019 1955429 R KEGG: pol:Bpro_2582 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(1955019..1955429) Polaromonas naphthalenivorans CJ2 4688512 YP_982067.1 CDS Pnap_1836 NC_008781.1 1955463 1956956 R PFAM: protein of unknown function UPF0061; KEGG: pol:Bpro_2581 protein of unknown function UPF0061; hypothetical protein complement(1955463..1956956) Polaromonas naphthalenivorans CJ2 4687747 YP_982068.1 CDS Pnap_1837 NC_008781.1 1957151 1958776 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1957151..1958776 Polaromonas naphthalenivorans CJ2 4688912 YP_982069.1 CDS Pnap_1838 NC_008781.1 1958853 1959806 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_2577 inner-membrane translocator; inner-membrane translocator 1958853..1959806 Polaromonas naphthalenivorans CJ2 4688986 YP_982070.1 CDS Pnap_1839 NC_008781.1 1959812 1961116 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_2576 inner-membrane translocator; inner-membrane translocator 1959812..1961116 Polaromonas naphthalenivorans CJ2 4689316 YP_982071.1 CDS Pnap_1840 NC_008781.1 1961113 1961913 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2575 ABC transporter related; ABC transporter-like protein 1961113..1961913 Polaromonas naphthalenivorans CJ2 4689036 YP_982072.1 CDS Pnap_1841 NC_008781.1 1961915 1962610 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2574 ABC transporter related; ABC transporter-like protein 1961915..1962610 Polaromonas naphthalenivorans CJ2 4690019 YP_982073.1 CDS Pnap_1842 NC_008781.1 1962822 1964921 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_2573 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 1962822..1964921 Polaromonas naphthalenivorans CJ2 4689797 YP_982074.1 CDS Pnap_1843 NC_008781.1 1964964 1966139 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1964964..1966139 Polaromonas naphthalenivorans CJ2 4689849 YP_982075.1 CDS Pnap_1844 NC_008781.1 1966374 1967165 D Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 1966374..1967165 Polaromonas naphthalenivorans CJ2 4689030 YP_982076.1 CDS Pnap_1845 NC_008781.1 1967170 1967613 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2566 phenylacetic acid degradation-related protein; hypothetical protein 1967170..1967613 Polaromonas naphthalenivorans CJ2 4689683 YP_982077.1 CDS Pnap_1846 NC_008781.1 1967729 1968745 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_2565 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 1967729..1968745 Polaromonas naphthalenivorans CJ2 4689919 YP_982078.1 CDS Pnap_1847 NC_008781.1 1968768 1970420 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_2564 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1968768..1970420 Polaromonas naphthalenivorans CJ2 4689871 YP_982079.1 CDS Pnap_1848 NC_008781.1 1970452 1971399 D KEGG: pol:Bpro_2563 putative glutathione S-transferase-related protein; putative glutathione S-transferase-like protein 1970452..1971399 Polaromonas naphthalenivorans CJ2 4689663 YP_982080.1 CDS Pnap_1849 NC_008781.1 1971396 1971845 D PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2562 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1971396..1971845 Polaromonas naphthalenivorans CJ2 4689473 YP_982081.1 CDS Pnap_1850 NC_008781.1 1971846 1972145 R hypothetical protein complement(1971846..1972145) Polaromonas naphthalenivorans CJ2 4689433 YP_982082.1 CDS Pnap_1851 NC_008781.1 1972603 1973391 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_2543 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 1972603..1973391 Polaromonas naphthalenivorans CJ2 4688885 YP_982083.1 CDS Pnap_1852 NC_008781.1 1973437 1973772 D hypothetical protein 1973437..1973772 Polaromonas naphthalenivorans CJ2 4688777 YP_982084.1 CDS Pnap_1853 NC_008781.1 1973826 1974431 D KEGG: pol:Bpro_2559 hypothetical protein; Fis family transcriptional regulator 1973826..1974431 Polaromonas naphthalenivorans CJ2 4688751 YP_982085.1 CDS Pnap_1854 NC_008781.1 1974599 1975828 R PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: serA; D-3-phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(1974599..1975828) Polaromonas naphthalenivorans CJ2 4688215 YP_982086.1 CDS Pnap_1855 NC_008781.1 1976450 1976899 R hypothetical protein complement(1976450..1976899) Polaromonas naphthalenivorans CJ2 4688276 YP_982087.1 CDS sucA NC_008781.1 1977412 1980303 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1977412..1980303 Polaromonas naphthalenivorans CJ2 4687959 YP_982088.1 CDS Pnap_1857 NC_008781.1 1980352 1981614 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1980352..1981614 Polaromonas naphthalenivorans CJ2 4687010 YP_982089.1 CDS Pnap_1858 NC_008781.1 1981645 1983114 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1981645..1983114 Polaromonas naphthalenivorans CJ2 4687284 YP_982090.1 CDS Pnap_1859 NC_008781.1 1983134 1984237 D PFAM: AFG1-family ATPase; KEGG: pol:Bpro_2621 AFG1-like ATPase; AFG1 family ATPase 1983134..1984237 Polaromonas naphthalenivorans CJ2 4686655 YP_982091.1 CDS Pnap_1860 NC_008781.1 1984462 1984881 D KEGG: pol:Bpro_2620 hypothetical protein; hypothetical protein 1984462..1984881 Polaromonas naphthalenivorans CJ2 4686211 YP_982092.1 CDS Pnap_1861 NC_008781.1 1984891 1985649 R SMART: protein phosphatase 2C domain protein; KEGG: pol:Bpro_2619 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein complement(1984891..1985649) Polaromonas naphthalenivorans CJ2 4686184 YP_982093.1 CDS Pnap_1862 NC_008781.1 1985730 1985933 D PFAM: protein of unknown function DUF465; KEGG: pol:Bpro_2618 protein of unknown function DUF465; hypothetical protein 1985730..1985933 Polaromonas naphthalenivorans CJ2 4686160 YP_982094.1 CDS Pnap_1863 NC_008781.1 1985933 1987939 D SMART: helicase c2; KEGG: pol:Bpro_2617 helicase C2; helicase c2 1985933..1987939 Polaromonas naphthalenivorans CJ2 4686469 YP_982095.1 CDS Pnap_1864 NC_008781.1 1987902 1988726 R KEGG: pol:Bpro_2616 putative transmembrane protein; hypothetical protein complement(1987902..1988726) Polaromonas naphthalenivorans CJ2 4686410 YP_982096.1 CDS Pnap_1865 NC_008781.1 1988744 1989778 D TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_2615 pseudouridine synthase, RluD; RluA family pseudouridine synthase 1988744..1989778 Polaromonas naphthalenivorans CJ2 4686319 YP_982097.1 CDS Pnap_1866 NC_008781.1 1989882 1990547 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pol:Bpro_2614 putative transcriptional regulator; putative transcriptional regulator 1989882..1990547 Polaromonas naphthalenivorans CJ2 4687064 YP_982098.1 CDS Pnap_1867 NC_008781.1 1990586 1992169 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_2613 pseudouridine synthase, Rsu; pseudouridine synthase 1990586..1992169 Polaromonas naphthalenivorans CJ2 4688376 YP_982099.1 CDS ndk NC_008781.1 1992298 1992723 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1992298..1992723 Polaromonas naphthalenivorans CJ2 4688707 YP_982100.1 CDS Pnap_1869 NC_008781.1 1992803 1993951 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: pol:Bpro_2611 hypothetical protein; radical SAM protein 1992803..1993951 Polaromonas naphthalenivorans CJ2 4687237 YP_982101.1 CDS Pnap_1870 NC_008781.1 1993948 1994754 D KEGG: pol:Bpro_2610 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1993948..1994754 Polaromonas naphthalenivorans CJ2 4686092 YP_982102.1 CDS Pnap_1871 NC_008781.1 1994765 1995694 D KEGG: pol:Bpro_2609 hypothetical protein; hypothetical protein 1994765..1995694 Polaromonas naphthalenivorans CJ2 4686523 YP_982103.1 CDS ispG NC_008781.1 1995694 1996968 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1995694..1996968 Polaromonas naphthalenivorans CJ2 4688101 YP_982104.1 CDS hisS NC_008781.1 1996974 1998344 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1996974..1998344 Polaromonas naphthalenivorans CJ2 4689814 YP_982105.1 CDS Pnap_1874 NC_008781.1 1998413 1999105 D KEGG: pol:Bpro_2606 hypothetical protein; hypothetical protein 1998413..1999105 Polaromonas naphthalenivorans CJ2 4689114 YP_982106.1 CDS Pnap_1875 NC_008781.1 1999102 2000247 D SMART: Pyrrolo-quinoline quinone; KEGG: pol:Bpro_2605 pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 1999102..2000247 Polaromonas naphthalenivorans CJ2 4686778 YP_982107.1 CDS engA NC_008781.1 2000282 2001619 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2000282..2001619 Polaromonas naphthalenivorans CJ2 4686341 YP_982108.1 CDS hfq NC_008781.1 2001676 2001945 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 2001676..2001945 Polaromonas naphthalenivorans CJ2 4686093 YP_982109.1 CDS Pnap_1878 NC_008781.1 2001963 2003114 D PFAM: GTP-binding protein, HSR1-related; KEGG: pol:Bpro_2602 GTP-binding protein, HSR1-related; HSR1-like GTP-binding protein 2001963..2003114 Polaromonas naphthalenivorans CJ2 4686476 YP_982110.1 CDS Pnap_1879 NC_008781.1 2003180 2004595 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pol:Bpro_2601 HflK protein; HflK protein 2003180..2004595 Polaromonas naphthalenivorans CJ2 4686515 YP_982111.1 CDS Pnap_1880 NC_008781.1 2004608 2005507 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pol:Bpro_2600 HflC protein; HflC protein 2004608..2005507 Polaromonas naphthalenivorans CJ2 4686170 YP_982112.1 CDS Pnap_1881 NC_008781.1 2005520 2005708 D KEGG: pol:Bpro_2599 hypothetical protein; hypothetical protein 2005520..2005708 Polaromonas naphthalenivorans CJ2 4686612 YP_982113.1 CDS Pnap_1882 NC_008781.1 2005860 2007029 D PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: pol:Bpro_2598 tRNA synthetase, class II (G, H, P and S); class II tRNA synthetase 2005860..2007029 Polaromonas naphthalenivorans CJ2 4686658 YP_982114.1 CDS Pnap_1883 NC_008781.1 2007118 2008458 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2007118..2008458 Polaromonas naphthalenivorans CJ2 4687303 YP_982115.1 CDS Pnap_1884 NC_008781.1 2008536 2009060 D PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_2596 phosphoribosyltransferase; phosphoribosyltransferase 2008536..2009060 Polaromonas naphthalenivorans CJ2 4687352 YP_982116.1 CDS Pnap_1885 NC_008781.1 2009191 2010384 D TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: pol:Bpro_2595 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme; cystathionine beta-lyase 2009191..2010384 Polaromonas naphthalenivorans CJ2 4687392 YP_982117.1 CDS Pnap_1886 NC_008781.1 2010453 2010641 D KEGG: rfr:Rfer_2230 hypothetical protein; hypothetical protein 2010453..2010641 Polaromonas naphthalenivorans CJ2 4687177 YP_982118.1 CDS Pnap_1887 NC_008781.1 2010785 2011843 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(2010785..2011843) Polaromonas naphthalenivorans CJ2 4687894 YP_982119.1 CDS Pnap_1888 NC_008781.1 2011840 2012457 R PFAM: lipolytic enzyme, G-D-S-L family; KEGG: pol:Bpro_3031 arylesterase; GDSL family lipase complement(2011840..2012457) Polaromonas naphthalenivorans CJ2 4688720 YP_982120.1 CDS Pnap_1889 NC_008781.1 2012582 2013298 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2425 ABC transporter related; ABC transporter-like protein 2012582..2013298 Polaromonas naphthalenivorans CJ2 4688768 YP_982121.1 CDS Pnap_1890 NC_008781.1 2013429 2014190 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: pol:Bpro_3029 RNA methyltransferase TrmH, group 3; RNA methyltransferase 2013429..2014190 Polaromonas naphthalenivorans CJ2 4688655 YP_982122.1 CDS Pnap_1891 NC_008781.1 2014293 2014553 R hypothetical protein complement(2014293..2014553) Polaromonas naphthalenivorans CJ2 4689356 YP_982123.1 CDS Pnap_1892 NC_008781.1 2014716 2015102 D PFAM: cytochrome c, class I; KEGG: dar:Daro_1022 cytochrome c-552 precursor; class I cytochrome c 2014716..2015102 Polaromonas naphthalenivorans CJ2 4689408 YP_982124.1 CDS Pnap_1893 NC_008781.1 2015120 2015446 R KEGG: pol:Bpro_3006 hypothetical protein; hypothetical protein complement(2015120..2015446) Polaromonas naphthalenivorans CJ2 4689255 YP_982125.1 CDS Pnap_1894 NC_008781.1 2015745 2016677 R PFAM: Ku domain protein; KEGG: pol:Bpro_3002 hypothetical protein; Ku domain-containing protein complement(2015745..2016677) Polaromonas naphthalenivorans CJ2 4690165 YP_982126.1 CDS Pnap_1895 NC_008781.1 2016680 2017294 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pae:PA0355 protease PfpI; PfpI family intracellular peptidase complement(2016680..2017294) Polaromonas naphthalenivorans CJ2 4689834 YP_982127.1 CDS Pnap_1896 NC_008781.1 2017502 2017972 D PFAM: CHRD domain containing protein; KEGG: pol:Bpro_3001 chordin; CHRD domain-containing protein 2017502..2017972 Polaromonas naphthalenivorans CJ2 4689717 YP_982128.1 CDS Pnap_1897 NC_008781.1 2018240 2020624 D PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rfr:Rfer_2734 radical SAM; radical SAM domain-containing protein 2018240..2020624 Polaromonas naphthalenivorans CJ2 4689454 YP_982129.1 CDS Pnap_1898 NC_008781.1 2020730 2021227 R PFAM: protein of unknown function DUF1294; KEGG: neu:NE0717 cold-shock DNA-binding domain; hypothetical protein complement(2020730..2021227) Polaromonas naphthalenivorans CJ2 4689117 YP_982130.1 CDS Pnap_1899 NC_008781.1 2021584 2023119 R PFAM: filamentation induced by cAMP protein Fic; KEGG: dar:Daro_2666 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(2021584..2023119) Polaromonas naphthalenivorans CJ2 4689974 YP_982131.1 CDS Pnap_1900 NC_008781.1 2023210 2024109 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_2993 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(2023210..2024109) Polaromonas naphthalenivorans CJ2 4689896 YP_982132.1 CDS Pnap_1901 NC_008781.1 2024260 2025444 R catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase complement(2024260..2025444) Polaromonas naphthalenivorans CJ2 4689053 YP_982133.1 CDS Pnap_1902 NC_008781.1 2025605 2026426 D TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2991 transcriptional regulator, IclR family; beta-ketoadipate pathway transcription regulator 2025605..2026426 Polaromonas naphthalenivorans CJ2 4689058 YP_982134.1 CDS Pnap_1903 NC_008781.1 2026438 2027172 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2989 ABC transporter related; ABC transporter-like protein complement(2026438..2027172) Polaromonas naphthalenivorans CJ2 4689008 YP_982135.1 CDS Pnap_1904 NC_008781.1 2027169 2027933 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2988 ABC transporter related; ABC transporter-like protein complement(2027169..2027933) Polaromonas naphthalenivorans CJ2 4688974 YP_982136.1 CDS Pnap_1905 NC_008781.1 2027926 2028942 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_2987 inner-membrane translocator; inner-membrane translocator complement(2027926..2028942) Polaromonas naphthalenivorans CJ2 4688451 YP_982137.1 CDS Pnap_1906 NC_008781.1 2028939 2029802 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_1621 inner-membrane translocator; inner-membrane translocator complement(2028939..2029802) Polaromonas naphthalenivorans CJ2 4689017 YP_982138.1 CDS Pnap_1907 NC_008781.1 2029847 2031034 R PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2984 twin-arginine translocation pathway signal; extracellular ligand-binding receptor complement(2029847..2031034) Polaromonas naphthalenivorans CJ2 4689049 YP_982139.1 CDS Pnap_1908 NC_008781.1 2031195 2031689 R PFAM: flavodoxin/nitric oxide synthase; KEGG: pol:Bpro_2982 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase complement(2031195..2031689) Polaromonas naphthalenivorans CJ2 4688475 YP_982140.1 CDS Pnap_1909 NC_008781.1 2032271 2032780 R KEGG: pol:Bpro_5569 ISSod10, transposase OrfB; ISSod10, transposase OrfB complement(2032271..2032780) Polaromonas naphthalenivorans CJ2 4687558 YP_982141.1 CDS Pnap_1910 NC_008781.1 2032809 2033342 R KEGG: pol:Bpro_5570 transposase and inactivated derivative; transposase and inactivated derivative complement(2032809..2033342) Polaromonas naphthalenivorans CJ2 4688254 YP_982142.1 CDS Pnap_1911 NC_008781.1 2033448 2034707 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_2961 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(2033448..2034707) Polaromonas naphthalenivorans CJ2 4687985 YP_982143.1 CDS Pnap_1912 NC_008781.1 2034775 2035866 R PFAM: aminoglycoside phosphotransferase; KEGG: pol:Bpro_2960 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(2034775..2035866) Polaromonas naphthalenivorans CJ2 4688502 YP_982144.1 CDS Pnap_1913 NC_008781.1 2035897 2036622 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_2959 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator complement(2035897..2036622) Polaromonas naphthalenivorans CJ2 4687523 YP_982145.1 CDS Pnap_1914 NC_008781.1 2036977 2037756 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2036977..2037756) Polaromonas naphthalenivorans CJ2 4686893 YP_982146.1 CDS Pnap_1915 NC_008781.1 2037758 2039320 R converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase complement(2037758..2039320) Polaromonas naphthalenivorans CJ2 4687060 YP_982147.1 CDS Pnap_1916 NC_008781.1 2039336 2040343 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_2956 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(2039336..2040343) Polaromonas naphthalenivorans CJ2 4686922 YP_982148.1 CDS Pnap_1917 NC_008781.1 2040436 2040855 R KEGG: pol:Bpro_2955 hypothetical protein; hypothetical protein complement(2040436..2040855) Polaromonas naphthalenivorans CJ2 4686797 YP_982149.1 CDS Pnap_1918 NC_008781.1 2040992 2041696 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(2040992..2041696) Polaromonas naphthalenivorans CJ2 4686755 YP_982150.1 CDS Pnap_1919 NC_008781.1 2041822 2042787 D PFAM: Asparaginase/glutaminase; KEGG: pol:Bpro_2953 asparaginase; asparaginase 2041822..2042787 Polaromonas naphthalenivorans CJ2 4686725 YP_982151.1 CDS adk NC_008781.1 2042834 2043490 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2042834..2043490) Polaromonas naphthalenivorans CJ2 4686456 YP_982152.1 CDS Pnap_1921 NC_008781.1 2043646 2044428 R KEGG: pol:Bpro_2951 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(2043646..2044428) Polaromonas naphthalenivorans CJ2 4686967 YP_982153.1 CDS Pnap_1922 NC_008781.1 2044436 2044618 R PFAM: protein of unknown function DUF343; KEGG: pol:Bpro_2950 protein of unknown function DUF343; hypothetical protein complement(2044436..2044618) Polaromonas naphthalenivorans CJ2 4686992 YP_982154.1 CDS lpxK NC_008781.1 2044599 2045630 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(2044599..2045630) Polaromonas naphthalenivorans CJ2 4686265 YP_982155.1 CDS Pnap_1924 NC_008781.1 2045673 2046107 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2948 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(2045673..2046107) Polaromonas naphthalenivorans CJ2 4686332 YP_982156.1 CDS Pnap_1925 NC_008781.1 2046104 2046727 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2947 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(2046104..2046727) Polaromonas naphthalenivorans CJ2 4686284 YP_982157.1 CDS Pnap_1926 NC_008781.1 2047068 2048387 D KEGG: pol:Bpro_2946 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit 2047068..2048387 Polaromonas naphthalenivorans CJ2 4686356 YP_982158.1 CDS Pnap_1927 NC_008781.1 2048446 2049027 D PFAM: manganese and iron superoxide dismutase; KEGG: pol:Bpro_2945 superoxide dismutase; superoxide dismutase 2048446..2049027 Polaromonas naphthalenivorans CJ2 4686335 YP_982159.1 CDS Pnap_1928 NC_008781.1 2049097 2049591 R PFAM: protein of unknown function DUF192; KEGG: pol:Bpro_2944 protein of unknown function DUF192; hypothetical protein complement(2049097..2049591) Polaromonas naphthalenivorans CJ2 4686363 YP_982160.1 CDS Pnap_1929 NC_008781.1 2049705 2050010 R KEGG: pol:Bpro_2943 TolA protein; TolA protein complement(2049705..2050010) Polaromonas naphthalenivorans CJ2 4686375 YP_982161.1 CDS Pnap_1930 NC_008781.1 2050235 2051488 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 2050235..2051488 Polaromonas naphthalenivorans CJ2 4686391 YP_982162.1 CDS Pnap_1931 NC_008781.1 2051660 2051962 D KEGG: bxe:Bxe_A3769 putative transposase; hypothetical protein 2051660..2051962 Polaromonas naphthalenivorans CJ2 4686379 YP_982163.1 CDS Pnap_1932 NC_008781.1 2052100 2052498 D PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_0624 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 2052100..2052498 Polaromonas naphthalenivorans CJ2 4686395 YP_982164.1 CDS clpS NC_008781.1 2052978 2053415 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2052978..2053415 Polaromonas naphthalenivorans CJ2 4686404 YP_982165.1 CDS Pnap_1934 NC_008781.1 2053496 2055832 D KEGG: pol:Bpro_2940 ATPase AAA-2; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2053496..2055832 Polaromonas naphthalenivorans CJ2 4686405 YP_982166.1 CDS sbcB NC_008781.1 2056001 2057449 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2056001..2057449 Polaromonas naphthalenivorans CJ2 4686104 YP_982167.1 CDS Pnap_1936 NC_008781.1 2057497 2058675 R PFAM: TrkA-N domain protein; Saccharopine dehydrogenase; KEGG: mlo:mlr4469 hypothetical protein; saccharopine dehydrogenase complement(2057497..2058675) Polaromonas naphthalenivorans CJ2 4686462 YP_982168.1 CDS Pnap_1937 NC_008781.1 2058816 2059247 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: mlo:mll4468 transcriptional regulator; AsnC family transcriptional regulator 2058816..2059247 Polaromonas naphthalenivorans CJ2 4686470 YP_982169.1 CDS Pnap_1938 NC_008781.1 2059251 2059937 R PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2938 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(2059251..2059937) Polaromonas naphthalenivorans CJ2 4686484 YP_982170.1 CDS Pnap_1939 NC_008781.1 2059939 2060889 R PFAM: Rhodanese domain protein; KEGG: pol:Bpro_2937 rhodanese-like; rhodanese domain-containing protein complement(2059939..2060889) Polaromonas naphthalenivorans CJ2 4686155 YP_982171.1 CDS Pnap_1940 NC_008781.1 2061041 2062342 D TIGRFAM: esterase, PHB depolymerase family; PFAM: putative esterase; KEGG: bxe:Bxe_B2846 esterase, PHB depolymerase; PHB depolymerase family esterase 2061041..2062342 Polaromonas naphthalenivorans CJ2 4686522 YP_982172.1 CDS Pnap_1941 NC_008781.1 2062453 2062974 R KEGG: pol:Bpro_2538 hypothetical protein; hypothetical protein complement(2062453..2062974) Polaromonas naphthalenivorans CJ2 4686165 YP_982173.1 CDS Pnap_1942 NC_008781.1 2063159 2065495 D PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: pol:Bpro_2537 RNA binding S1; RNA-binding S1 domain-containing protein 2063159..2065495 Polaromonas naphthalenivorans CJ2 4686173 YP_982174.1 CDS Pnap_1943 NC_008781.1 2065635 2066771 R PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2526 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(2065635..2066771) Polaromonas naphthalenivorans CJ2 4686176 YP_982175.1 CDS Pnap_1944 NC_008781.1 2066942 2067907 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pol:Bpro_2525 alpha/beta hydrolase fold-3; alpha/beta hydrolase domain-containing protein 2066942..2067907 Polaromonas naphthalenivorans CJ2 4686551 YP_982176.1 CDS Pnap_1946 NC_008781.1 2068883 2069836 R PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: pol:Bpro_2521 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) complement(2068883..2069836) Polaromonas naphthalenivorans CJ2 4687585 YP_982177.1 CDS Pnap_1947 NC_008781.1 2069925 2070932 D PFAM: aminodeoxychorismate lyase; KEGG: pol:Bpro_2520 aminodeoxychorismate lyase; aminodeoxychorismate lyase 2069925..2070932 Polaromonas naphthalenivorans CJ2 4686599 YP_982178.1 CDS tmk NC_008781.1 2070935 2071717 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2070935..2071717 Polaromonas naphthalenivorans CJ2 4686399 YP_982179.1 CDS Pnap_1949 NC_008781.1 2071714 2072835 D KEGG: pol:Bpro_2518 DNA-directed DNA polymerase; DNA-directed DNA polymerase 2071714..2072835 Polaromonas naphthalenivorans CJ2 4686638 YP_982180.1 CDS Pnap_1950 NC_008781.1 2072859 2073239 D PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ; type IV pilus assembly PilZ 2072859..2073239 Polaromonas naphthalenivorans CJ2 4686633 YP_982181.1 CDS Pnap_1951 NC_008781.1 2073271 2074068 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pol:Bpro_2516 TatD-related deoxyribonuclease; TatD family hydrolase 2073271..2074068 Polaromonas naphthalenivorans CJ2 4686651 YP_982182.1 CDS Pnap_1952 NC_008781.1 2074065 2074736 D PFAM: Ankyrin; KEGG: pol:Bpro_2515 ankyrin; ankyrin 2074065..2074736 Polaromonas naphthalenivorans CJ2 4686670 YP_982183.1 CDS Pnap_1953 NC_008781.1 2074750 2076126 R KEGG: rfr:Rfer_4122 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(2074750..2076126) Polaromonas naphthalenivorans CJ2 4686652 YP_982184.1 CDS Pnap_1954 NC_008781.1 2076136 2077593 R PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rfr:Rfer_4121 hydrogen:quinone oxidoreductase; nickel-dependent hydrogenase large subunit complement(2076136..2077593) Polaromonas naphthalenivorans CJ2 4686672 YP_982185.1 CDS Pnap_1955 NC_008781.1 2077590 2078600 R PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rfr:Rfer_4120 uptake hydrogenase accessory protein HupU; NADH ubiquinone oxidoreductase, 20 kDa subunit complement(2077590..2078600) Polaromonas naphthalenivorans CJ2 4687278 YP_982186.1 CDS Pnap_1956 NC_008781.1 2078603 2080063 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_3962 helix-turn-helix, fis-type; Fis family two component sigma-54 specific transcriptional regulator complement(2078603..2080063) Polaromonas naphthalenivorans CJ2 4687044 YP_982187.1 CDS Pnap_1957 NC_008781.1 2080060 2081868 R PFAM: Enoyl-CoA hydratase/isomerase; formyl transferase domain protein; KEGG: rme:Rmet_1541 formyl transferase-like protein; formyl transferase domain-containing protein complement(2080060..2081868) Polaromonas naphthalenivorans CJ2 4687319 YP_982188.1 CDS Pnap_1958 NC_008781.1 2081865 2082398 R hypothetical protein complement(2081865..2082398) Polaromonas naphthalenivorans CJ2 4687326 YP_982189.1 CDS Pnap_1959 NC_008781.1 2082421 2083485 R TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rme:Rmet_1281 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE complement(2082421..2083485) Polaromonas naphthalenivorans CJ2 4687167 YP_982190.1 CDS Pnap_1960 NC_008781.1 2083482 2084627 R TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rme:Rmet_1282 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD complement(2083482..2084627) Polaromonas naphthalenivorans CJ2 4687348 YP_982191.1 CDS Pnap_1961 NC_008781.1 2084624 2084881 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rme:Rmet_1283 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF complement(2084624..2084881) Polaromonas naphthalenivorans CJ2 4687181 YP_982192.1 CDS Pnap_1962 NC_008781.1 2084872 2086089 R KEGG: rme:Rmet_1284 hydrogenase maturation protein HypF; hydrogenase maturation protein HypF complement(2084872..2086089) Polaromonas naphthalenivorans CJ2 4686616 YP_982193.1 CDS Pnap_1963 NC_008781.1 2086095 2087081 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: rme:Rmet_1285 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB complement(2086095..2087081) Polaromonas naphthalenivorans CJ2 4687201 YP_982194.1 CDS Pnap_1964 NC_008781.1 2087094 2087441 R PFAM: hydrogenase expression/synthesis, HypA; KEGG: rme:Rmet_1286 hydrogenase nickel insertion protein HypA; hydrogenase expression/synthesis, HypA complement(2087094..2087441) Polaromonas naphthalenivorans CJ2 4687413 YP_982195.1 CDS Pnap_1965 NC_008781.1 2087434 2088606 R KEGG: rme:Rmet_1287 hypothetical protein; hypothetical protein complement(2087434..2088606) Polaromonas naphthalenivorans CJ2 4687391 YP_982196.1 CDS Pnap_1966 NC_008781.1 2088599 2089141 R KEGG: rme:Rmet_1288 HupJ, contains rubredoxin domain; hypothetical protein complement(2088599..2089141) Polaromonas naphthalenivorans CJ2 4687188 YP_982197.1 CDS Pnap_1967 NC_008781.1 2089145 2089387 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rme:Rmet_1289 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein complement(2089145..2089387) Polaromonas naphthalenivorans CJ2 4687435 YP_982198.1 CDS Pnap_1968 NC_008781.1 2089384 2090250 R PFAM: HupH hydrogenase expression protein; KEGG: rme:Rmet_1290 HupH hydrogenase expression protein; HupH hydrogenase expression protein complement(2089384..2090250) Polaromonas naphthalenivorans CJ2 4687184 YP_982199.1 CDS Pnap_1969 NC_008781.1 2090268 2090777 R PFAM: hydrogenase-1 expression HyaE; KEGG: rme:Rmet_1291 hydrogenase-1 expression HyaE; hydrogenase-1 expression HyaE complement(2090268..2090777) Polaromonas naphthalenivorans CJ2 4687441 YP_982200.1 CDS Pnap_1970 NC_008781.1 2090800 2091126 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rme:Rmet_1292 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF complement(2090800..2091126) Polaromonas naphthalenivorans CJ2 4687445 YP_982201.1 CDS Pnap_1971 NC_008781.1 2091134 2091805 R TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52, hydrogen uptake protein; KEGG: rme:Rmet_1293 hydrogenase expression/formation protein; hydrogenase expression/formation protein complement(2091134..2091805) Polaromonas naphthalenivorans CJ2 4687448 YP_982202.1 CDS Pnap_1972 NC_008781.1 2091892 2092632 R TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: rme:Rmet_1295 nickel-dependent hydrogenase b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit complement(2091892..2092632) Polaromonas naphthalenivorans CJ2 4687224 YP_982203.1 CDS Pnap_1973 NC_008781.1 2092648 2093238 R PFAM: HupE/UreJ protein; KEGG: rme:Rmet_1296 HupE/UreJ protein; HupE/UreJ protein complement(2092648..2093238) Polaromonas naphthalenivorans CJ2 4687468 YP_982204.1 CDS Pnap_1974 NC_008781.1 2093280 2095136 R PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rme:Rmet_1297 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit complement(2093280..2095136) Polaromonas naphthalenivorans CJ2 4687192 YP_982205.1 CDS Pnap_1975 NC_008781.1 2095169 2096263 R KEGG: rme:Rmet_1298 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA complement(2095169..2096263) Polaromonas naphthalenivorans CJ2 4687491 YP_982206.1 CDS Pnap_1976 NC_008781.1 2096724 2099024 R PFAM: von Willebrand factor, type A; KEGG: tbd:Tbd_2636 rubisco activation protein CbbO; von Willebrand factor type A domain-containing protein complement(2096724..2099024) Polaromonas naphthalenivorans CJ2 4687960 YP_982207.1 CDS Pnap_1977 NC_008781.1 2099036 2099833 R PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: tbd:Tbd_2637 rubisco activation protein CbbQ; CbbQ/NirQ/NorQ C-terminal domain-containing protein complement(2099036..2099833) Polaromonas naphthalenivorans CJ2 4687494 YP_982208.1 CDS Pnap_1978 NC_008781.1 2099886 2101265 R catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase complement(2099886..2101265) Polaromonas naphthalenivorans CJ2 4688038 YP_982209.1 CDS Pnap_1979 NC_008781.1 2101392 2102309 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1394 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2101392..2102309) Polaromonas naphthalenivorans CJ2 4687738 YP_982210.1 CDS Pnap_1980 NC_008781.1 2102443 2103204 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B2478 HAD-superfamily hydrolase, subfamily IA, variant3; HAD family hydrolase 2102443..2103204 Polaromonas naphthalenivorans CJ2 4688088 YP_982211.1 CDS Pnap_1981 NC_008781.1 2103214 2103924 D PFAM: ribulose-phosphate 3-epimerase; KEGG: bbr:BB4624 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 2103214..2103924 Polaromonas naphthalenivorans CJ2 4687764 YP_982212.1 CDS Pnap_1982 NC_008781.1 2103968 2105062 D PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: rfr:Rfer_1393 inositol phosphatase/fructose-1,6-bisphosphatase; inositol phosphatase/fructose-1,6-bisphosphatase 2103968..2105062 Polaromonas naphthalenivorans CJ2 4688089 YP_982213.1 CDS Pnap_1983 NC_008781.1 2105150 2106034 D PFAM: phosphoribulokinase/uridine kinase; KEGG: rfr:Rfer_1392 phosphoribulokinase; phosphoribulokinase 2105150..2106034 Polaromonas naphthalenivorans CJ2 4688105 YP_982214.1 CDS Pnap_1984 NC_008781.1 2106056 2108137 D TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: tbd:Tbd_0159 transketolase; transketolase 2106056..2108137 Polaromonas naphthalenivorans CJ2 4688110 YP_982215.1 CDS Pnap_1985 NC_008781.1 2108151 2108822 D TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rme:Rmet_1514 phosphoglycolate phosphatase; phosphoglycolate phosphatase 2108151..2108822 Polaromonas naphthalenivorans CJ2 4688106 YP_982216.1 CDS Pnap_1986 NC_008781.1 2108893 2109909 D TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: pol:Bpro_4826 glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase 2108893..2109909 Polaromonas naphthalenivorans CJ2 4688157 YP_982217.1 CDS Pnap_1987 NC_008781.1 2109906 2111108 D PFAM: phosphoglycerate kinase; KEGG: pol:Bpro_4635 phosphoglycerate kinase; phosphoglycerate kinase 2109906..2111108 Polaromonas naphthalenivorans CJ2 4688160 YP_982218.1 CDS Pnap_1988 NC_008781.1 2111190 2112206 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 2111190..2112206 Polaromonas naphthalenivorans CJ2 4687476 YP_982219.1 CDS Pnap_1989 NC_008781.1 2112300 2113694 R PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_C0670 putative transposase; integrase catalytic subunit complement(2112300..2113694) Polaromonas naphthalenivorans CJ2 4688194 YP_982220.1 CDS Pnap_1990 NC_008781.1 2113858 2114871 R KEGG: rfr:Rfer_2260 hypothetical protein; hypothetical protein complement(2113858..2114871) Polaromonas naphthalenivorans CJ2 4688217 YP_982221.1 CDS Pnap_1991 NC_008781.1 2114995 2116071 D PFAM: phage integrase family protein; KEGG: rfr:Rfer_2261 phage integrase; phage integrase family protein 2114995..2116071 Polaromonas naphthalenivorans CJ2 4688209 YP_982222.1 CDS Pnap_1992 NC_008781.1 2116186 2117121 D KEGG: pol:Bpro_2457 putative signal peptide protein; putative signal peptide protein 2116186..2117121 Polaromonas naphthalenivorans CJ2 4688710 YP_982223.1 CDS Pnap_1993 NC_008781.1 2117340 2119529 D PFAM: ThiJ/PfpI domain protein; Catalase domain protein; KEGG: pol:Bpro_2453 catalase; catalase 2117340..2119529 Polaromonas naphthalenivorans CJ2 4688229 YP_982224.1 CDS Pnap_1994 NC_008781.1 2119577 2120503 R PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: pol:Bpro_2451 putative adenylate/guanylate cyclase; putative adenylate/guanylate cyclase complement(2119577..2120503) Polaromonas naphthalenivorans CJ2 4688722 YP_982225.1 CDS Pnap_1995 NC_008781.1 2120695 2121036 D KEGG: pol:Bpro_2449 hypothetical protein; hypothetical protein 2120695..2121036 Polaromonas naphthalenivorans CJ2 4688758 YP_982226.1 CDS Pnap_1996 NC_008781.1 2121074 2122033 R PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: pol:Bpro_2448 muramoyltetrapeptide carboxypeptidase; muramoyltetrapeptide carboxypeptidase complement(2121074..2122033) Polaromonas naphthalenivorans CJ2 4688769 YP_982227.1 CDS Pnap_1997 NC_008781.1 2122054 2123289 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pol:Bpro_2447 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase complement(2122054..2123289) Polaromonas naphthalenivorans CJ2 4688763 YP_982228.1 CDS Pnap_1998 NC_008781.1 2123355 2123603 R KEGG: pol:Bpro_2446 hypothetical protein; hypothetical protein complement(2123355..2123603) Polaromonas naphthalenivorans CJ2 4688602 YP_982229.1 CDS Pnap_1999 NC_008781.1 2123759 2124169 D KEGG: rso:RS03692 hypothetical protein; hypothetical protein 2123759..2124169 Polaromonas naphthalenivorans CJ2 4688785 YP_982230.1 CDS guaA NC_008781.1 2124230 2125852 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2124230..2125852) Polaromonas naphthalenivorans CJ2 4688797 YP_982231.1 CDS Pnap_2001 NC_008781.1 2125933 2127402 R KEGG: pol:Bpro_2440 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase complement(2125933..2127402) Polaromonas naphthalenivorans CJ2 4688626 YP_982232.1 CDS Pnap_2002 NC_008781.1 2127467 2128087 D KEGG: pol:Bpro_2439 hypothetical protein; hypothetical protein 2127467..2128087 Polaromonas naphthalenivorans CJ2 4688820 YP_982233.1 CDS Pnap_2003 NC_008781.1 2128109 2128474 R PFAM: protein of unknown function UPF0125; KEGG: pol:Bpro_2438 protein of unknown function UPF0125; hypothetical protein complement(2128109..2128474) Polaromonas naphthalenivorans CJ2 4688819 YP_982234.1 CDS Pnap_2004 NC_008781.1 2128461 2128907 R PFAM: cyclase/dehydrase; KEGG: pol:Bpro_2437 cyclase/dehydrase; cyclase/dehydrase complement(2128461..2128907) Polaromonas naphthalenivorans CJ2 4688620 YP_982235.1 CDS smpB NC_008781.1 2128979 2129536 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2128979..2129536 Polaromonas naphthalenivorans CJ2 4688854 YP_982236.1 CDS Pnap_2006 NC_008781.1 2129568 2130695 R catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase complement(2129568..2130695) Polaromonas naphthalenivorans CJ2 4688855 YP_982237.1 CDS Pnap_2007 NC_008781.1 2130692 2131567 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_2430 protein of unknown function DUF6, transmembrane; hypothetical protein complement(2130692..2131567) Polaromonas naphthalenivorans CJ2 4688871 YP_982238.1 CDS Pnap_2008 NC_008781.1 2131667 2133490 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: rfr:Rfer_2137 GTP-binding protein TypA; GTP-binding protein TypA complement(2131667..2133490) Polaromonas naphthalenivorans CJ2 4688872 YP_982239.1 CDS truB NC_008781.1 2133526 2134569 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(2133526..2134569) Polaromonas naphthalenivorans CJ2 4688897 YP_982240.1 CDS rbfA NC_008781.1 2134657 2135025 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(2134657..2135025) Polaromonas naphthalenivorans CJ2 4688184 YP_982241.1 CDS infB NC_008781.1 2135105 2138083 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(2135105..2138083) Polaromonas naphthalenivorans CJ2 4688672 YP_982242.1 CDS Pnap_2012 NC_008781.1 2138112 2139632 R KEGG: pol:Bpro_2425 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH, type 1, domain protein; NusA N-terminal domain protein; SMART: KH domain protein; NusA antitermination factor complement(2138112..2139632) Polaromonas naphthalenivorans CJ2 4689359 YP_982243.1 CDS Pnap_2013 NC_008781.1 2139655 2140263 R PFAM: protein of unknown function DUF150; KEGG: pol:Bpro_2424 protein of unknown function DUF150; hypothetical protein complement(2139655..2140263) Polaromonas naphthalenivorans CJ2 4688678 YP_982244.1 CDS Pnap_2014 NC_008781.1 2140465 2142069 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2423 ABC transporter related; ABC transporter-like protein complement(2140465..2142069) Polaromonas naphthalenivorans CJ2 4689385 YP_982245.1 CDS Pnap_2015 NC_008781.1 2142066 2143121 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2422 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2142066..2143121) Polaromonas naphthalenivorans CJ2 4689394 YP_982246.1 CDS Pnap_2016 NC_008781.1 2143124 2144158 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2421 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2143124..2144158) Polaromonas naphthalenivorans CJ2 4689097 YP_982247.1 CDS Pnap_2017 NC_008781.1 2144171 2145985 R PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_2420 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(2144171..2145985) Polaromonas naphthalenivorans CJ2 4689397 YP_982248.1 CDS Pnap_2018 NC_008781.1 2146098 2146895 D KEGG: pol:Bpro_2419 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2146098..2146895 Polaromonas naphthalenivorans CJ2 4689162 YP_982249.1 CDS Pnap_2019 NC_008781.1 2146979 2147866 D catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 2146979..2147866 Polaromonas naphthalenivorans CJ2 4689180 YP_982250.1 CDS Pnap_2020 NC_008781.1 2147972 2150305 R PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pol:Bpro_2415 lysine decarboxylase; lysine decarboxylase complement(2147972..2150305) Polaromonas naphthalenivorans CJ2 4689434 YP_982251.1 CDS Pnap_2021 NC_008781.1 2150579 2151007 D PFAM: protein of unknown function DUF107; KEGG: pol:Bpro_2414 protein of unknown function DUF107; hypothetical protein 2150579..2151007 Polaromonas naphthalenivorans CJ2 4689196 YP_982252.1 CDS Pnap_2022 NC_008781.1 2151078 2151989 D PFAM: band 7 protein; KEGG: pol:Bpro_2413 band 7 protein; hypothetical protein 2151078..2151989 Polaromonas naphthalenivorans CJ2 4689526 YP_982253.1 CDS Pnap_2023 NC_008781.1 2152025 2152399 D KEGG: pol:Bpro_2412 hypothetical protein; hypothetical protein 2152025..2152399 Polaromonas naphthalenivorans CJ2 4689543 YP_982254.1 CDS Pnap_2024 NC_008781.1 2152558 2152818 D hypothetical protein 2152558..2152818 Polaromonas naphthalenivorans CJ2 4687040 YP_982255.1 CDS Pnap_2025 NC_008781.1 2152815 2153819 R PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0302 aldo/keto reductase; aldo/keto reductase complement(2152815..2153819) Polaromonas naphthalenivorans CJ2 4689560 YP_982256.1 CDS Pnap_2026 NC_008781.1 2153952 2154914 R PFAM: oxidoreductase domain protein; KEGG: rfr:Rfer_0329 oxidoreductase-like; oxidoreductase domain-containing protein complement(2153952..2154914) Polaromonas naphthalenivorans CJ2 4689276 YP_982257.1 CDS Pnap_2027 NC_008781.1 2154915 2155832 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta complement(2154915..2155832) Polaromonas naphthalenivorans CJ2 4689564 YP_982258.1 CDS Pnap_2028 NC_008781.1 2155833 2156285 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha complement(2155833..2156285) Polaromonas naphthalenivorans CJ2 4689283 YP_982259.1 CDS Pnap_2029 NC_008781.1 2156289 2157227 R PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0332 amidohydrolase 2; amidohydrolase 2 complement(2156289..2157227) Polaromonas naphthalenivorans CJ2 4689621 YP_982260.1 CDS Pnap_2030 NC_008781.1 2157237 2158235 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065; hypothetical protein complement(2157237..2158235) Polaromonas naphthalenivorans CJ2 4689634 YP_982261.1 CDS Pnap_2031 NC_008781.1 2158269 2158958 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase; hypothetical protein complement(2158269..2158958) Polaromonas naphthalenivorans CJ2 4689288 YP_982262.1 CDS Pnap_2032 NC_008781.1 2158962 2159990 R PFAM: amidohydrolase 2; KEGG: pol:Bpro_4320 amidohydrolase 2; amidohydrolase 2 complement(2158962..2159990) Polaromonas naphthalenivorans CJ2 4689647 YP_982263.1 CDS Pnap_2033 NC_008781.1 2160000 2161169 R PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453; hypothetical protein complement(2160000..2161169) Polaromonas naphthalenivorans CJ2 4689638 YP_982264.1 CDS Pnap_2034 NC_008781.1 2161304 2162215 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0341 transcriptional regulator, LysR family; LysR family transcriptional regulator 2161304..2162215 Polaromonas naphthalenivorans CJ2 4690072 YP_982265.1 CDS Pnap_2035 NC_008781.1 2162616 2163020 D KEGG: dar:Daro_1481 hypothetical protein; hypothetical protein 2162616..2163020 Polaromonas naphthalenivorans CJ2 4690089 YP_982266.1 CDS Pnap_2036 NC_008781.1 2163047 2163877 D TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: dar:Daro_1477 molybdenum-binding protein, N-terminal:molybdenum-pterin binding protein; ModE family transcriptional regulator 2163047..2163877 Polaromonas naphthalenivorans CJ2 4689553 YP_982267.1 CDS Pnap_2037 NC_008781.1 2163910 2164662 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: dar:Daro_1476 molybdenum ABC transporter, periplasmic binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 2163910..2164662 Polaromonas naphthalenivorans CJ2 4690051 YP_982268.1 CDS Pnap_2038 NC_008781.1 2164677 2165108 D KEGG: rpc:RPC_4545 hypothetical protein; hypothetical protein 2164677..2165108 Polaromonas naphthalenivorans CJ2 4690167 YP_982269.1 CDS Pnap_2039 NC_008781.1 2165127 2165966 D TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: dar:Daro_1475 putative molybdenum utilization protein ModD; modD protein 2165127..2165966 Polaromonas naphthalenivorans CJ2 4690173 YP_982270.1 CDS Pnap_2040 NC_008781.1 2166052 2166732 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1379 molybdenum ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit 2166052..2166732 Polaromonas naphthalenivorans CJ2 4689988 YP_982271.1 CDS Pnap_2041 NC_008781.1 2166734 2167804 D KEGG: mca:MCA1380 molybdenum ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 2166734..2167804 Polaromonas naphthalenivorans CJ2 4688630 YP_982272.1 CDS Pnap_2042 NC_008781.1 2167904 2168503 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rfr:Rfer_1441 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein complement(2167904..2168503) Polaromonas naphthalenivorans CJ2 4689884 YP_982273.1 CDS Pnap_2043 NC_008781.1 2168976 2170808 R PFAM: protein of unknown function DUF255; KEGG: tbd:Tbd_2727 hypothetical protein; hypothetical protein complement(2168976..2170808) Polaromonas naphthalenivorans CJ2 4690025 YP_982274.1 CDS Pnap_2044 NC_008781.1 2171048 2171296 R KEGG: rfr:Rfer_3825 hypothetical protein; hypothetical protein complement(2171048..2171296) Polaromonas naphthalenivorans CJ2 4689975 YP_982275.1 CDS Pnap_2045 NC_008781.1 2171388 2171699 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: mca:MCA0586 Rieske 2Fe-2S family protein; Rieske (2Fe-2S) domain-containing protein complement(2171388..2171699) Polaromonas naphthalenivorans CJ2 4689832 YP_982276.1 CDS Pnap_2046 NC_008781.1 2171719 2173296 R KEGG: mca:MCA1608 hypothetical protein; hypothetical protein complement(2171719..2173296) Polaromonas naphthalenivorans CJ2 4689915 YP_982277.1 CDS Pnap_2047 NC_008781.1 2173749 2174582 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pol:Bpro_1988 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD-binding protein complement(2173749..2174582) Polaromonas naphthalenivorans CJ2 4687037 YP_982278.1 CDS Pnap_2048 NC_008781.1 2174666 2175427 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1986 tetratricopeptide TPR_2; hypothetical protein complement(2174666..2175427) Polaromonas naphthalenivorans CJ2 4689798 YP_982279.1 CDS Pnap_2049 NC_008781.1 2175443 2175982 R TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1985 OmpA/MotB; OmpA domain-containing protein complement(2175443..2175982) Polaromonas naphthalenivorans CJ2 4689738 YP_982280.1 CDS tolB NC_008781.1 2176027 2177316 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(2176027..2177316) Polaromonas naphthalenivorans CJ2 4689778 YP_982281.1 CDS Pnap_2051 NC_008781.1 2177331 2178173 R PFAM: glycosyl transferase, family 2; KEGG: hhe:HH0773 hypothetical protein; glycosyl transferase family protein complement(2177331..2178173) Polaromonas naphthalenivorans CJ2 4689730 YP_982282.1 CDS Pnap_2052 NC_008781.1 2178173 2178940 R PFAM: glycosyl transferase, family 2; KEGG: pol:Bpro_1982 glycosyl transferase, family 2; glycosyl transferase family protein complement(2178173..2178940) Polaromonas naphthalenivorans CJ2 4689707 YP_982283.1 CDS Pnap_2053 NC_008781.1 2179137 2180354 D PFAM: O-antigen polymerase; KEGG: pol:Bpro_1980 O-antigen polymerase; O-antigen polymerase 2179137..2180354 Polaromonas naphthalenivorans CJ2 4689305 YP_982284.1 CDS Pnap_2054 NC_008781.1 2180351 2182132 D KEGG: pol:Bpro_1979 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 2180351..2182132 Polaromonas naphthalenivorans CJ2 4689704 YP_982285.1 CDS Pnap_2055 NC_008781.1 2182134 2182733 R KEGG: pol:Bpro_2723 hypothetical protein; hypothetical protein complement(2182134..2182733) Polaromonas naphthalenivorans CJ2 4689697 YP_982286.1 CDS Pnap_2056 NC_008781.1 2183274 2184041 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2726 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 2183274..2184041 Polaromonas naphthalenivorans CJ2 4689679 YP_982287.1 CDS Pnap_2057 NC_008781.1 2184019 2184750 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2727 ABC transporter related; ABC transporter-like protein 2184019..2184750 Polaromonas naphthalenivorans CJ2 4689994 YP_982288.1 CDS Pnap_2058 NC_008781.1 2184867 2185079 R KEGG: pol:Bpro_2733 hypothetical protein; hypothetical protein complement(2184867..2185079) Polaromonas naphthalenivorans CJ2 4689568 YP_982289.1 CDS Pnap_2059 NC_008781.1 2185082 2185444 R PFAM: translation initiation factor SUI1; KEGG: pol:Bpro_2734 translation initiation factor SUI1; translation initiation factor SUI1 complement(2185082..2185444) Polaromonas naphthalenivorans CJ2 4689665 YP_982290.1 CDS Pnap_2060 NC_008781.1 2185487 2185918 R KEGG: pol:Bpro_1344 hypothetical protein; hypothetical protein complement(2185487..2185918) Polaromonas naphthalenivorans CJ2 4689517 YP_982291.1 CDS Pnap_2061 NC_008781.1 2186115 2188547 R PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pol:Bpro_2329 glycosyl transferase, family 51; glycosyl transferase family protein complement(2186115..2188547) Polaromonas naphthalenivorans CJ2 4689414 YP_982292.1 CDS Pnap_2062 NC_008781.1 2188620 2189198 R PFAM: protein of unknown function DUF937; KEGG: pcr:Pcryo_2016 hypothetical protein; hypothetical protein complement(2188620..2189198) Polaromonas naphthalenivorans CJ2 4689474 YP_982293.1 CDS Pnap_2063 NC_008781.1 2189265 2191829 D KEGG: hypothetical protein; hypothetical protein 2189265..2191829 Polaromonas naphthalenivorans CJ2 4689390 YP_982294.1 CDS Pnap_2064 NC_008781.1 2191953 2193182 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pol:Bpro_2328 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2191953..2193182) Polaromonas naphthalenivorans CJ2 4689378 YP_982295.1 CDS Pnap_2065 NC_008781.1 2193229 2195289 R PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pol:Bpro_2084 peptidoglycan glycosyltransferase; glycosyl transferase family protein complement(2193229..2195289) Polaromonas naphthalenivorans CJ2 4689371 YP_982296.1 CDS Pnap_2066 NC_008781.1 2195568 2195780 D hypothetical protein 2195568..2195780 Polaromonas naphthalenivorans CJ2 4689772 YP_982297.1 CDS Pnap_2067 NC_008781.1 2195789 2196763 R PFAM: PfkB domain protein; KEGG: bcn:Bcen_6346 PfkB; ribokinase-like domain-containing protein complement(2195789..2196763) Polaromonas naphthalenivorans CJ2 4689770 YP_982298.1 CDS Pnap_2068 NC_008781.1 2196772 2198307 R PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: bcn:Bcen_6467 altronate dehydratase; altronate dehydratase complement(2196772..2198307) Polaromonas naphthalenivorans CJ2 4689885 YP_982299.1 CDS Pnap_2069 NC_008781.1 2198348 2199496 R PFAM: Mannitol dehydrogenase, C-terminal domain; KEGG: atc:AGR_C_5101 altronate oxidoreductase; mannitol dehydrogenase domain-containing protein complement(2198348..2199496) Polaromonas naphthalenivorans CJ2 4689879 YP_982300.1 CDS Pnap_2070 NC_008781.1 2199502 2200512 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bcn:Bcen_6469 alcohol dehydrogenase GroES-like; alcohol dehydrogenase complement(2199502..2200512) Polaromonas naphthalenivorans CJ2 4689972 YP_982301.1 CDS Pnap_2071 NC_008781.1 2200582 2201349 R PFAM: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_1029 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(2200582..2201349) Polaromonas naphthalenivorans CJ2 4689878 YP_982302.1 CDS Pnap_2072 NC_008781.1 2201407 2202135 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3973 ABC transporter related; ABC transporter-like protein complement(2201407..2202135) Polaromonas naphthalenivorans CJ2 4689858 YP_982303.1 CDS Pnap_2073 NC_008781.1 2202119 2202769 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1031 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit complement(2202119..2202769) Polaromonas naphthalenivorans CJ2 4689845 YP_982304.1 CDS Pnap_2074 NC_008781.1 2202782 2203465 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1032 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit complement(2202782..2203465) Polaromonas naphthalenivorans CJ2 4689799 YP_982305.1 CDS Pnap_2075 NC_008781.1 2203710 2204477 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: atc:AGR_C_5113 hypothetical protein; GntR family transcriptional regulator 2203710..2204477 Polaromonas naphthalenivorans CJ2 4689951 YP_982306.1 CDS Pnap_2076 NC_008781.1 2204657 2205844 R PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2746 aminotransferase, class I and II; GntR family transcriptional regulator complement(2204657..2205844) Polaromonas naphthalenivorans CJ2 4689970 YP_982307.1 CDS Pnap_2077 NC_008781.1 2206425 2207804 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5481 HNH endonuclease; HNH endonuclease 2206425..2207804 Polaromonas naphthalenivorans CJ2 4689942 YP_982308.1 CDS Pnap_2078 NC_008781.1 2207801 2212558 D PFAM: NAD-glutamate dehydrogenase; KEGG: rfr:Rfer_1509 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase 2207801..2212558 Polaromonas naphthalenivorans CJ2 4689672 YP_982309.1 CDS Pnap_2079 NC_008781.1 2212579 2213223 D TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: pol:Bpro_2747 endonuclease III; endonuclease III 2212579..2213223 Polaromonas naphthalenivorans CJ2 4689910 YP_982310.1 CDS Pnap_2080 NC_008781.1 2213352 2214290 D PFAM: PfkB domain protein; KEGG: pol:Bpro_2756 PfkB; ribokinase-like domain-containing protein 2213352..2214290 Polaromonas naphthalenivorans CJ2 4689898 YP_982311.1 CDS Pnap_2081 NC_008781.1 2214516 2216981 D KEGG: pol:Bpro_2757 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing enzyme; pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; phosphoenolpyruvate synthase 2214516..2216981 Polaromonas naphthalenivorans CJ2 4689891 YP_982312.1 CDS Pnap_2082 NC_008781.1 2216978 2217355 D PFAM: CBS domain containing protein; KEGG: pol:Bpro_2758 putative signal-transduction protein with CBS domains; signal-transduction protein 2216978..2217355 Polaromonas naphthalenivorans CJ2 4689854 YP_982313.1 CDS Pnap_2083 NC_008781.1 2217363 2217839 R KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 complement(2217363..2217839) Polaromonas naphthalenivorans CJ2 4689895 YP_982314.1 CDS Pnap_2084 NC_008781.1 2217901 2218317 R KEGG: ana:alr1858 transposase; hypothetical protein complement(2217901..2218317) Polaromonas naphthalenivorans CJ2 4689841 YP_982315.1 CDS Pnap_2085 NC_008781.1 2218691 2220379 R PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: gsu:GSU0716 hypothetical protein; peptidase C14, caspase catalytic subunit p20 complement(2218691..2220379) Polaromonas naphthalenivorans CJ2 4689825 YP_982316.1 CDS Pnap_2086 NC_008781.1 2220408 2223599 R KEGG: mma:MM3064 hypothetical protein; hypothetical protein complement(2220408..2223599) Polaromonas naphthalenivorans CJ2 4689321 YP_982317.1 CDS Pnap_2087 NC_008781.1 2223688 2226246 R KEGG: mma:MM3065 hypothetical protein; hypothetical protein complement(2223688..2226246) Polaromonas naphthalenivorans CJ2 4689344 YP_982318.1 CDS Pnap_2088 NC_008781.1 2226779 2227240 D PFAM: UspA domain protein; KEGG: pol:Bpro_3368 UspA; UspA domain-containing protein 2226779..2227240 Polaromonas naphthalenivorans CJ2 4689123 YP_982319.1 CDS Pnap_2089 NC_008781.1 2227230 2227520 D KEGG: rfr:Rfer_3317 putative lipase; putative lipase 2227230..2227520 Polaromonas naphthalenivorans CJ2 4689337 YP_982320.1 CDS Pnap_2090 NC_008781.1 2227577 2228383 R KEGG: rfr:Rfer_1542 hypothetical protein; hypothetical protein complement(2227577..2228383) Polaromonas naphthalenivorans CJ2 4689046 YP_982321.1 CDS Pnap_2091 NC_008781.1 2228535 2229446 D PFAM: dienelactone hydrolase; KEGG: rfr:Rfer_3313 twin-arginine translocation pathway signal; carboxymethylenebutenolidase 2228535..2229446 Polaromonas naphthalenivorans CJ2 4689091 YP_982322.1 CDS Pnap_2092 NC_008781.1 2229525 2230631 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bpm:BURPS1710b_3194 glycerophosphoryl diester phosphodiesterase family protein; glycerophosphoryl diester phosphodiesterase 2229525..2230631 Polaromonas naphthalenivorans CJ2 4688996 YP_982323.1 CDS Pnap_2093 NC_008781.1 2231037 2232458 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: reu:Reut_B3939 regulatory protein GntR, HTH:aminotransferase, class I and II; GntR family transcriptional regulator 2231037..2232458 Polaromonas naphthalenivorans CJ2 4689001 YP_982324.1 CDS Pnap_2094 NC_008781.1 2232468 2233757 R PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I; class I cytochrome c complement(2232468..2233757) Polaromonas naphthalenivorans CJ2 4688993 YP_982325.1 CDS Pnap_2095 NC_008781.1 2233754 2234608 R KEGG: pol:Bpro_3448 putative cytochrome c; putative cytochrome c complement(2233754..2234608) Polaromonas naphthalenivorans CJ2 4689917 YP_982326.1 CDS Pnap_2096 NC_008781.1 2234605 2236053 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin complement(2234605..2236053) Polaromonas naphthalenivorans CJ2 4688979 YP_982327.1 CDS Pnap_2097 NC_008781.1 2236088 2237056 R hypothetical protein complement(2236088..2237056) Polaromonas naphthalenivorans CJ2 4688971 YP_982328.1 CDS Pnap_2098 NC_008781.1 2237053 2238345 R PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_A1414 hypothetical protein; FAD dependent oxidoreductase complement(2237053..2238345) Polaromonas naphthalenivorans CJ2 4688928 YP_982329.1 CDS Pnap_2099 NC_008781.1 2238402 2238689 R KEGG: bxe:Bxe_A1413 hypothetical protein; hypothetical protein complement(2238402..2238689) Polaromonas naphthalenivorans CJ2 4687741 YP_982330.1 CDS Pnap_2100 NC_008781.1 2238733 2239935 R PFAM: glycosyl transferase, group 1; KEGG: bxe:Bxe_A1412 putative glycosyl transferases group 1; group 1 glycosyl transferase complement(2238733..2239935) Polaromonas naphthalenivorans CJ2 4688385 YP_982331.1 CDS Pnap_2101 NC_008781.1 2239928 2240953 R PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bxe:Bxe_A1411 putative thiamine-monophosphate kinase; AIR synthase-like protein complement(2239928..2240953) Polaromonas naphthalenivorans CJ2 4688400 YP_982332.1 CDS Pnap_2102 NC_008781.1 2240950 2241507 R PFAM: GCN5-related N-acetyltransferase; KEGG: bxe:Bxe_A1410 hypothetical protein; N-acetyltransferase GCN5 complement(2240950..2241507) Polaromonas naphthalenivorans CJ2 4688775 YP_982333.1 CDS Pnap_2103 NC_008781.1 2241520 2242608 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bxe:Bxe_A1409 hypothetical protein; radical SAM domain-containing protein complement(2241520..2242608) Polaromonas naphthalenivorans CJ2 4688460 YP_982334.1 CDS Pnap_2104 NC_008781.1 2242571 2243632 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bxe:Bxe_A1408 putative nitrilase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(2242571..2243632) Polaromonas naphthalenivorans CJ2 4688746 YP_982335.1 CDS Pnap_2105 NC_008781.1 2243647 2244129 R KEGG: bxe:Bxe_A1407 hypothetical protein; hypothetical protein complement(2243647..2244129) Polaromonas naphthalenivorans CJ2 4688455 YP_982336.1 CDS Pnap_2106 NC_008781.1 2244484 2245872 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: bxe:Bxe_A1406 transcriptional regulator, GntR family; GntR family transcriptional regulator 2244484..2245872 Polaromonas naphthalenivorans CJ2 4689015 YP_982337.1 CDS Pnap_2107 NC_008781.1 2246034 2247215 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: bur:Bcep18194_B2976 benzoate membrane transport protein; benzoate transporter complement(2246034..2247215) Polaromonas naphthalenivorans CJ2 4688716 YP_982338.1 CDS Pnap_2108 NC_008781.1 2247411 2248775 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_B3938 general substrate transporter:major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2247411..2248775) Polaromonas naphthalenivorans CJ2 4689067 YP_982339.1 CDS benD NC_008781.1 2248850 2249629 R catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase complement(2248850..2249629) Polaromonas naphthalenivorans CJ2 4689019 YP_982340.1 CDS Pnap_2110 NC_008781.1 2249700 2250707 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: pfl:PFL_3856 ring-hydroxylating dioxygenase, ferredoxin reductase subunit; FadD27 protein complement(2249700..2250707) Polaromonas naphthalenivorans CJ2 4689084 YP_982341.1 CDS Pnap_2111 NC_008781.1 2250727 2251215 R PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: cgb:cg2638 benzoate dioxygenase small subunit; 2-chlorobenzoate 1,2-dioxygenase complement(2250727..2251215) Polaromonas naphthalenivorans CJ2 4689071 YP_982342.1 CDS Pnap_2112 NC_008781.1 2251226 2252617 R PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: rme:Rmet_4882 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(2251226..2252617) Polaromonas naphthalenivorans CJ2 4689131 YP_982343.1 CDS Pnap_2113 NC_008781.1 2252638 2252982 D hypothetical protein 2252638..2252982 Polaromonas naphthalenivorans CJ2 4689025 YP_982344.1 CDS Pnap_2114 NC_008781.1 2253010 2253951 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2394 transcriptional regulator, LysR family; LysR family transcriptional regulator 2253010..2253951 Polaromonas naphthalenivorans CJ2 4688399 YP_982345.1 CDS Pnap_2115 NC_008781.1 2253952 2254410 R TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bxe:Bxe_C0584 hypothetical protein; hemerythrin-like metal-binding protein complement(2253952..2254410) Polaromonas naphthalenivorans CJ2 4688409 YP_982346.1 CDS Pnap_2116 NC_008781.1 2254519 2255433 R PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; KEGG: rme:Rmet_1781 catechol 1,2-dioxygenase; intradiol ring-cleavage dioxygenase complement(2254519..2255433) Polaromonas naphthalenivorans CJ2 4688420 YP_982347.1 CDS Pnap_2117 NC_008781.1 2255498 2256481 R PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4876 uncharacterized protein UPF0065; hypothetical protein complement(2255498..2256481) Polaromonas naphthalenivorans CJ2 4688345 YP_982348.1 CDS Pnap_2118 NC_008781.1 2256523 2256801 R PFAM: Muconolactone delta-isomerase; KEGG: rme:Rmet_4877 muconolactone delta-isomerase; muconolactone delta-isomerase complement(2256523..2256801) Polaromonas naphthalenivorans CJ2 4688493 YP_982349.1 CDS Pnap_2119 NC_008781.1 2256813 2257997 R KEGG: rme:Rmet_4878 mandelate racemase/muconate lactonizing enzyme; TIGRFAM: muconate and chloromuconate cycloisomerases; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; muconate and chloromuconate cycloisomerase complement(2256813..2257997) Polaromonas naphthalenivorans CJ2 4688394 YP_982350.1 CDS Pnap_2120 NC_008781.1 2258122 2259000 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2482 transcriptional regulator, LysR family; LysR family transcriptional regulator 2258122..2259000 Polaromonas naphthalenivorans CJ2 4688458 YP_982351.1 CDS Pnap_2121 NC_008781.1 2259016 2259786 R PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1857 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2259016..2259786) Polaromonas naphthalenivorans CJ2 4688320 YP_982352.1 CDS Pnap_2122 NC_008781.1 2259895 2260404 R PFAM: regulatory protein, MarR; KEGG: reu:Reut_B3914 regulatory protein, MarR; MarR family transcriptional regulator complement(2259895..2260404) Polaromonas naphthalenivorans CJ2 4688313 YP_982353.1 CDS Pnap_2123 NC_008781.1 2260531 2261298 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rpd:RPD_1541 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2260531..2261298 Polaromonas naphthalenivorans CJ2 4688314 YP_982354.1 CDS Pnap_2124 NC_008781.1 2261463 2262245 D TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_1542 naphthoate synthase; naphthoate synthase 2261463..2262245 Polaromonas naphthalenivorans CJ2 4688299 YP_982355.1 CDS Pnap_2125 NC_008781.1 2262263 2263420 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_1543 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 2262263..2263420 Polaromonas naphthalenivorans CJ2 4688294 YP_982356.1 CDS Pnap_2126 NC_008781.1 2263454 2265097 D AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate; cyclohexanecarboxylate-CoA ligase 2263454..2265097 Polaromonas naphthalenivorans CJ2 4688988 YP_982357.1 CDS Pnap_2127 NC_008781.1 2265137 2266135 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4609 uncharacterized protein UPF0065; hypothetical protein 2265137..2266135 Polaromonas naphthalenivorans CJ2 4688283 YP_982358.1 CDS Pnap_2128 NC_008781.1 2266235 2267014 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA0650 cyclohex-1-ene-1-carboxyl-CoA hydratase; enoyl-CoA hydratase/isomerase 2266235..2267014 Polaromonas naphthalenivorans CJ2 4688258 YP_982359.1 CDS Pnap_2129 NC_008781.1 2267042 2268202 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rme:Rmet_5908 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase 2267042..2268202 Polaromonas naphthalenivorans CJ2 4688282 YP_982360.1 CDS Pnap_2130 NC_008781.1 2268251 2269435 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: eba:ebA2993 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2268251..2269435 Polaromonas naphthalenivorans CJ2 4688249 YP_982361.1 CDS Pnap_2131 NC_008781.1 2269455 2270204 D PFAM: electron transfer flavoprotein beta-subunit; KEGG: pol:Bpro_3143 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 2269455..2270204 Polaromonas naphthalenivorans CJ2 4688221 YP_982362.1 CDS Pnap_2132 NC_008781.1 2270235 2271167 D PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: pol:Bpro_3142 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 2270235..2271167 Polaromonas naphthalenivorans CJ2 4687880 YP_982363.1 CDS Pnap_2133 NC_008781.1 2271368 2273371 D TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK1485 acetoacetyl-CoA synthetase; acetoacetyl-CoA synthase 2271368..2273371 Polaromonas naphthalenivorans CJ2 4687893 YP_982364.1 CDS Pnap_2134 NC_008781.1 2273368 2274405 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_1539 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 2273368..2274405 Polaromonas naphthalenivorans CJ2 4687794 YP_982365.1 CDS Pnap_2135 NC_008781.1 2274412 2276472 D PFAM: Enoyl-CoA hydratase/isomerase; FAD dependent oxidoreductase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: reu:Reut_B3873 enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 2274412..2276472 Polaromonas naphthalenivorans CJ2 4688051 YP_982366.1 CDS Pnap_2136 NC_008781.1 2276503 2277708 D KEGG: pol:Bpro_1231 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase 2276503..2277708 Polaromonas naphthalenivorans CJ2 4688057 YP_982367.1 CDS Pnap_2138 NC_008781.1 2278333 2279328 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0579 uncharacterized protein UPF0065; hypothetical protein complement(2278333..2279328) Polaromonas naphthalenivorans CJ2 4688218 YP_982368.1 CDS Pnap_2139 NC_008781.1 2279372 2280244 R PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase; HpcH/HpaI aldolase complement(2279372..2280244) Polaromonas naphthalenivorans CJ2 4688040 YP_982369.1 CDS Pnap_2140 NC_008781.1 2280237 2281622 R PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD; MmgE/PrpD family protein complement(2280237..2281622) Polaromonas naphthalenivorans CJ2 4687642 YP_982370.1 CDS Pnap_2141 NC_008781.1 2281725 2282906 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0582 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(2281725..2282906) Polaromonas naphthalenivorans CJ2 4687957 YP_982371.1 CDS Pnap_2142 NC_008781.1 2282922 2284085 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0583 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(2282922..2284085) Polaromonas naphthalenivorans CJ2 4688328 YP_982372.1 CDS Pnap_2143 NC_008781.1 2284112 2285014 R KEGG: pol:Bpro_0584 hypothetical protein; hypothetical protein complement(2284112..2285014) Polaromonas naphthalenivorans CJ2 4687948 YP_982373.1 CDS Pnap_2144 NC_008781.1 2285137 2286045 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0586 transcriptional regulator, LysR family; LysR family transcriptional regulator 2285137..2286045 Polaromonas naphthalenivorans CJ2 4688333 YP_982374.1 CDS Pnap_2145 NC_008781.1 2286227 2286541 D KEGG: pol:Bpro_2759 hypothetical protein; hypothetical protein 2286227..2286541 Polaromonas naphthalenivorans CJ2 4688508 YP_982375.1 CDS Pnap_2146 NC_008781.1 2286558 2288015 R TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2760 cobyric acid synthase CobQ; cobyric acid synthase CobQ complement(2286558..2288015) Polaromonas naphthalenivorans CJ2 4688289 YP_982376.1 CDS Pnap_2147 NC_008781.1 2288012 2289055 R PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2761 aminotransferase, class I and II; class I/II aminotransferase complement(2288012..2289055) Polaromonas naphthalenivorans CJ2 4688522 YP_982377.1 CDS Pnap_2148 NC_008781.1 2289055 2290038 R TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: pol:Bpro_2762 cobalamin biosynthesis protein CobD; cobalamin biosynthesis protein CobD complement(2289055..2290038) Polaromonas naphthalenivorans CJ2 4688349 YP_982378.1 CDS Pnap_2149 NC_008781.1 2290046 2290738 R TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: pol:Bpro_2763 cob(II)yrinic acid a,c-diamide reductase; cob(II)yrinic acid a,c-diamide reductase complement(2290046..2290738) Polaromonas naphthalenivorans CJ2 4688381 YP_982379.1 CDS Pnap_2150 NC_008781.1 2290743 2291324 R KEGG: pol:Bpro_2764 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase complement(2290743..2291324) Polaromonas naphthalenivorans CJ2 4688342 YP_982380.1 CDS Pnap_2151 NC_008781.1 2291331 2292107 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2765 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(2291331..2292107) Polaromonas naphthalenivorans CJ2 4688353 YP_982381.1 CDS Pnap_2152 NC_008781.1 2292088 2292438 R KEGG: pol:Bpro_2766 hypothetical protein; hypothetical protein complement(2292088..2292438) Polaromonas naphthalenivorans CJ2 4688370 YP_982382.1 CDS Pnap_2153 NC_008781.1 2292435 2293430 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2767 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase complement(2292435..2293430) Polaromonas naphthalenivorans CJ2 4687649 YP_982383.1 CDS Pnap_2154 NC_008781.1 2293427 2294254 R KEGG: pol:Bpro_2768 hypothetical protein; hypothetical protein complement(2293427..2294254) Polaromonas naphthalenivorans CJ2 4687564 YP_982384.1 CDS Pnap_2155 NC_008781.1 2294270 2294458 R hypothetical protein complement(2294270..2294458) Polaromonas naphthalenivorans CJ2 4687550 YP_982385.1 CDS Pnap_2156 NC_008781.1 2294498 2294932 R PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pol:Bpro_2769 cobalamin (vitamin B12) biosynthesis CbiG protein; cobalamin (vitamin B12) biosynthesis protein CbiG complement(2294498..2294932) Polaromonas naphthalenivorans CJ2 4687519 YP_982386.1 CDS Pnap_2157 NC_008781.1 2294929 2295690 R PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pol:Bpro_2773 cobalamin (vitamin B12) biosynthesis CbiG protein; cobalamin (vitamin B12) biosynthesis protein CbiG complement(2294929..2295690) Polaromonas naphthalenivorans CJ2 4687526 YP_982387.1 CDS Pnap_2158 NC_008781.1 2295687 2296508 R TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2774 precorrin-2 C20-methyltransferase; precorrin-2 C(20)-methyltransferase complement(2295687..2296508) Polaromonas naphthalenivorans CJ2 4687473 YP_982388.1 CDS Pnap_2159 NC_008781.1 2296505 2297815 R KEGG: pol:Bpro_2775 precorrin-6y C5,15-methyltransferase, subunit CbiE; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE complement(2296505..2297815) Polaromonas naphthalenivorans CJ2 4687426 YP_982389.1 CDS cbiD NC_008781.1 2297812 2298909 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(2297812..2298909) Polaromonas naphthalenivorans CJ2 4688324 YP_982390.1 CDS Pnap_2161 NC_008781.1 2298906 2299592 R PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: pol:Bpro_2777 precorrin-8X methylmutase CbiC/CobH; precorrin-8X methylmutase CbiC/CobH complement(2298906..2299592) Polaromonas naphthalenivorans CJ2 4687402 YP_982391.1 CDS Pnap_2162 NC_008781.1 2299589 2300554 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mca:MCA2299 CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein complement(2299589..2300554) Polaromonas naphthalenivorans CJ2 4687373 YP_982392.1 CDS Pnap_2163 NC_008781.1 2300551 2301375 R TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2779 precorrin-4 C11-methyltransferase; precorrin-4 C(11)-methyltransferase complement(2300551..2301375) Polaromonas naphthalenivorans CJ2 4687399 YP_982393.1 CDS Pnap_2164 NC_008781.1 2301958 2302923 R PFAM: Auxin Efflux Carrier; KEGG: eba:ebA5059 predicted permease; auxin efflux carrier complement(2301958..2302923) Polaromonas naphthalenivorans CJ2 4686926 YP_982394.1 CDS Pnap_2165 NC_008781.1 2302953 2303852 R PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0336 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase complement(2302953..2303852) Polaromonas naphthalenivorans CJ2 4686279 YP_982395.1 CDS Pnap_2166 NC_008781.1 2304099 2305229 R PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2411 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(2304099..2305229) Polaromonas naphthalenivorans CJ2 4687335 YP_982396.1 CDS Pnap_2167 NC_008781.1 2305406 2305753 R KEGG: pol:Bpro_2410 hypothetical protein; hypothetical protein complement(2305406..2305753) Polaromonas naphthalenivorans CJ2 4687272 YP_982397.1 CDS Pnap_2168 NC_008781.1 2305750 2306190 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(2305750..2306190) Polaromonas naphthalenivorans CJ2 4687665 YP_982398.1 CDS Pnap_2169 NC_008781.1 2306187 2307719 R PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: pol:Bpro_2408 leucyl aminopeptidase; leucyl aminopeptidase complement(2306187..2307719) Polaromonas naphthalenivorans CJ2 4687656 YP_982399.1 CDS Pnap_2170 NC_008781.1 2307798 2308919 D PFAM: permease YjgP/YjgQ family protein; KEGG: pol:Bpro_2407 permease YjgP/YjgQ; permease 2307798..2308919 Polaromonas naphthalenivorans CJ2 4687686 YP_982400.1 CDS Pnap_2171 NC_008781.1 2308916 2310055 D PFAM: permease YjgP/YjgQ family protein; KEGG: pol:Bpro_2406 permease YjgP/YjgQ; permease 2308916..2310055 Polaromonas naphthalenivorans CJ2 4687609 YP_982401.1 CDS Pnap_2172 NC_008781.1 2310091 2310468 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: pol:Bpro_2405 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein 2310091..2310468 Polaromonas naphthalenivorans CJ2 4687619 YP_982402.1 CDS Pnap_2173 NC_008781.1 2310573 2311517 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2404 transcriptional regulator, LysR family; transcriptional regulator CysB-like protein 2310573..2311517 Polaromonas naphthalenivorans CJ2 4687640 YP_982403.1 CDS Pnap_2174 NC_008781.1 2311521 2312705 D catalyzes the transfer of an amino moiety; putative aminotransferase 2311521..2312705 Polaromonas naphthalenivorans CJ2 4687647 YP_982404.1 CDS Pnap_2175 NC_008781.1 2312796 2312954 D KEGG: pol:Bpro_2400 hypothetical protein; hypothetical protein 2312796..2312954 Polaromonas naphthalenivorans CJ2 4687611 YP_982405.1 CDS Pnap_2176 NC_008781.1 2313015 2316935 R KEGG: pol:Bpro_2399 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA complement(2313015..2316935) Polaromonas naphthalenivorans CJ2 4686918 YP_982406.1 CDS Pnap_2177 NC_008781.1 2317118 2318470 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2317118..2318470 Polaromonas naphthalenivorans CJ2 4687042 YP_982407.1 CDS Pnap_2178 NC_008781.1 2318500 2319972 R KEGG: algE; outer membrane protein AlgE; hypothetical protein complement(2318500..2319972) Polaromonas naphthalenivorans CJ2 4687262 YP_982408.1 CDS Pnap_2179 NC_008781.1 2320099 2320836 R hypothetical protein complement(2320099..2320836) Polaromonas naphthalenivorans CJ2 4687073 YP_982409.1 CDS Pnap_2180 NC_008781.1 2320859 2323993 R PFAM: acriflavin resistance protein; KEGG: neu:NE0669 acriflavin resistance protein; acriflavin resistance protein complement(2320859..2323993) Polaromonas naphthalenivorans CJ2 4687019 YP_982410.1 CDS Pnap_2181 NC_008781.1 2324046 2324999 R KEGG: neu:NE0670 possible membrane fusion protein MtrC; hypothetical protein complement(2324046..2324999) Polaromonas naphthalenivorans CJ2 4686889 YP_982411.1 CDS Pnap_2182 NC_008781.1 2325034 2325765 R KEGG: bxe:Bxe_B1750 hypothetical protein; hypothetical protein complement(2325034..2325765) Polaromonas naphthalenivorans CJ2 4687020 YP_982412.1 CDS Pnap_2183 NC_008781.1 2325804 2328968 R PFAM: acriflavin resistance protein; KEGG: neu:NE0669 acriflavin resistance protein; acriflavin resistance protein complement(2325804..2328968) Polaromonas naphthalenivorans CJ2 4686869 YP_982413.1 CDS Pnap_2184 NC_008781.1 2329015 2329455 R hypothetical protein complement(2329015..2329455) Polaromonas naphthalenivorans CJ2 4686913 YP_982414.1 CDS Pnap_2185 NC_008781.1 2329588 2330295 D PFAM: dienelactone hydrolase; KEGG: pol:Bpro_2392 phosphoribosyltransferase; dienelactone hydrolase 2329588..2330295 Polaromonas naphthalenivorans CJ2 4686839 YP_982415.1 CDS Pnap_2186 NC_008781.1 2330308 2332356 D PFAM: phosphoribosyltransferase; Erythromycin esterase; KEGG: pol:Bpro_2391 erythromycin esterase; erythromycin esterase 2330308..2332356 Polaromonas naphthalenivorans CJ2 4686894 YP_982416.1 CDS Pnap_2187 NC_008781.1 2332362 2333738 R PFAM: HI0933 family protein; KEGG: pol:Bpro_2266 HI0933-like protein; hypothetical protein complement(2332362..2333738) Polaromonas naphthalenivorans CJ2 4686760 YP_982417.1 CDS Pnap_2188 NC_008781.1 2333971 2334360 R PFAM: Carboxymuconolactone decarboxylase; KEGG: mag:amb3965 uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit; carboxymuconolactone decarboxylase complement(2333971..2334360) Polaromonas naphthalenivorans CJ2 4686775 YP_982418.1 CDS Pnap_2189 NC_008781.1 2334372 2334764 R PFAM: regulatory protein, MerR; KEGG: sma:SAV6758 MerR-family transcriptional regulator; MerR family transcriptional regulator complement(2334372..2334764) Polaromonas naphthalenivorans CJ2 4686709 YP_982419.1 CDS Pnap_2190 NC_008781.1 2334845 2335282 R hypothetical protein complement(2334845..2335282) Polaromonas naphthalenivorans CJ2 4686757 YP_982420.1 CDS Pnap_2191 NC_008781.1 2335320 2335736 R PFAM: regulatory protein, ArsR; KEGG: ttj:TTHA0156 hypothetical protein; regulatory protein ArsR complement(2335320..2335736) Polaromonas naphthalenivorans CJ2 4686667 YP_982421.1 CDS Pnap_2192 NC_008781.1 2335733 2336824 R hypothetical protein complement(2335733..2336824) Polaromonas naphthalenivorans CJ2 4686698 YP_982422.1 CDS Pnap_2193 NC_008781.1 2337008 2340319 R PFAM: UvrD/REP helicase; KEGG: pol:Bpro_2265 UvrD/REP helicase; UvrD/REP helicase complement(2337008..2340319) Polaromonas naphthalenivorans CJ2 4686636 YP_982423.1 CDS Pnap_2194 NC_008781.1 2340316 2342883 R KEGG: pol:Bpro_2264 RecB family exonuclease-like; exonuclease-like protein complement(2340316..2342883) Polaromonas naphthalenivorans CJ2 4686592 YP_982424.1 CDS Pnap_2195 NC_008781.1 2343052 2343384 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_2263 thioredoxin; thioredoxin 2343052..2343384 Polaromonas naphthalenivorans CJ2 4686559 YP_982425.1 CDS rho NC_008781.1 2343636 2344898 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2343636..2344898 Polaromonas naphthalenivorans CJ2 4686103 YP_982426.1 CDS Pnap_2197 NC_008781.1 2345074 2345367 D PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; 50S ribosomal protein L31 2345074..2345367 Polaromonas naphthalenivorans CJ2 4687425 YP_982427.1 CDS Pnap_2198 NC_008781.1 2345489 2347258 D KEGG: pol:Bpro_2260 hypothetical protein; hypothetical protein 2345489..2347258 Polaromonas naphthalenivorans CJ2 4686402 YP_982428.1 CDS Pnap_2199 NC_008781.1 2347255 2348622 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pol:Bpro_2259 MATE efflux family protein; MATE efflux family protein 2347255..2348622 Polaromonas naphthalenivorans CJ2 4686415 YP_982429.1 CDS Pnap_2200 NC_008781.1 2348610 2349956 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: pol:Bpro_2258 multi-sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(2348610..2349956) Polaromonas naphthalenivorans CJ2 4686370 YP_982430.1 CDS Pnap_2201 NC_008781.1 2349953 2350681 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2257 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2349953..2350681) Polaromonas naphthalenivorans CJ2 4686357 YP_982431.1 CDS Pnap_2202 NC_008781.1 2350678 2351382 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pol:Bpro_2256 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU complement(2350678..2351382) Polaromonas naphthalenivorans CJ2 4686360 YP_982432.1 CDS pstB NC_008781.1 2351439 2352221 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(2351439..2352221) Polaromonas naphthalenivorans CJ2 4686340 YP_982433.1 CDS pstA NC_008781.1 2352265 2353137 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA complement(2352265..2353137) Polaromonas naphthalenivorans CJ2 4686343 YP_982434.1 CDS Pnap_2205 NC_008781.1 2353134 2354099 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2253 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease complement(2353134..2354099) Polaromonas naphthalenivorans CJ2 4686337 YP_982435.1 CDS Pnap_2206 NC_008781.1 2354232 2355275 R TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2252 periplasmic phosphate binding protein; phosphate ABC transporter substrate-binding protein complement(2354232..2355275) Polaromonas naphthalenivorans CJ2 4686831 YP_982436.1 CDS Pnap_2207 NC_008781.1 2355474 2355956 D PFAM: beta-Ig-H3/fasciclin; KEGG: pol:Bpro_2251 beta-Ig-H3/fasciclin; beta-Ig-H3/fasciclin 2355474..2355956 Polaromonas naphthalenivorans CJ2 4686824 YP_982437.1 CDS Pnap_2208 NC_008781.1 2356086 2357240 D KEGG: pol:Bpro_2250 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 2356086..2357240 Polaromonas naphthalenivorans CJ2 4686820 YP_982438.1 CDS Pnap_2209 NC_008781.1 2357244 2358806 D PFAM: Ppx/GppA phosphatase; KEGG: pol:Bpro_2249 Ppx/GppA phosphatase; Ppx/GppA phosphatase 2357244..2358806 Polaromonas naphthalenivorans CJ2 4686976 YP_982439.1 CDS Pnap_2210 NC_008781.1 2358878 2359438 D KEGG: pol:Bpro_2248 hypothetical protein; hypothetical protein 2358878..2359438 Polaromonas naphthalenivorans CJ2 4686936 YP_982440.1 CDS Pnap_2211 NC_008781.1 2359466 2359939 R PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_2247 putative phosphohistidine phosphatase, SixA; putative phosphohistidine phosphatase SixA complement(2359466..2359939) Polaromonas naphthalenivorans CJ2 4686427 YP_982441.1 CDS Pnap_2212 NC_008781.1 2359946 2362051 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(2359946..2362051) Polaromonas naphthalenivorans CJ2 4686950 YP_982442.1 CDS Pnap_2213 NC_008781.1 2362240 2363982 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: pol:Bpro_2817 thiamine pyrophosphate enzyme-like TPP-binding; Fis family transcriptional regulator complement(2362240..2363982) Polaromonas naphthalenivorans CJ2 4686270 YP_982443.1 CDS Pnap_2214 NC_008781.1 2364006 2364308 R KEGG: pol:Bpro_2818 hypothetical protein; hypothetical protein complement(2364006..2364308) Polaromonas naphthalenivorans CJ2 4686883 YP_982444.1 CDS Pnap_2215 NC_008781.1 2364420 2366882 R PFAM: MscS Mechanosensitive ion channel; KEGG: bbr:BB1859 hypothetical protein; mechanosensitive ion channel protein MscS complement(2364420..2366882) Polaromonas naphthalenivorans CJ2 4686518 YP_982445.1 CDS Pnap_2216 NC_008781.1 2366977 2368212 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_2824 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2366977..2368212) Polaromonas naphthalenivorans CJ2 4686800 YP_982446.1 CDS Pnap_2217 NC_008781.1 2368314 2369156 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: pol:Bpro_2825 transcriptional regulator, AraC family; AraC family transcriptional regulator 2368314..2369156 Polaromonas naphthalenivorans CJ2 4689691 YP_982447.1 CDS Pnap_2218 NC_008781.1 2369253 2370677 R PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4051 probable coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase complement(2369253..2370677) Polaromonas naphthalenivorans CJ2 4688671 YP_982448.1 CDS Pnap_2219 NC_008781.1 2370766 2371269 D PFAM: CreA family protein; KEGG: eba:ebA3483 CreA protein; CreA family protein 2370766..2371269 Polaromonas naphthalenivorans CJ2 4687779 YP_982449.1 CDS Pnap_2220 NC_008781.1 2371382 2372359 D PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: rfr:Rfer_0490 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein 2371382..2372359 Polaromonas naphthalenivorans CJ2 4687752 YP_982450.1 CDS Pnap_2221 NC_008781.1 2372356 2372676 D KEGG: dar:Daro_2064 bacterial regulatory proteins, MerR family; MerR family transcriptional regulator 2372356..2372676 Polaromonas naphthalenivorans CJ2 4690127 YP_982451.1 CDS Pnap_2222 NC_008781.1 2372785 2373009 D TIGRFAM: putative addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rfr:Rfer_3405 transcriptional regulator/antitoxin, MazE; putative addiction module antidote 2372785..2373009 Polaromonas naphthalenivorans CJ2 4689241 YP_982452.1 CDS Pnap_2223 NC_008781.1 2373006 2373410 D TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein; death-on-curing family protein 2373006..2373410 Polaromonas naphthalenivorans CJ2 4686251 YP_982453.1 CDS Pnap_2224 NC_008781.1 2373537 2374613 D PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related; Allergen V5/Tpx-1 family protein 2373537..2374613 Polaromonas naphthalenivorans CJ2 4686182 YP_982454.1 CDS Pnap_2225 NC_008781.1 2374721 2377324 R PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2201 ATPase AAA-2; ATPase complement(2374721..2377324) Polaromonas naphthalenivorans CJ2 4687863 YP_982455.1 CDS Pnap_2226 NC_008781.1 2377463 2377936 R PFAM: molybdopterin biosynthesis MoaE; KEGG: rfr:Rfer_1917 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE complement(2377463..2377936) Polaromonas naphthalenivorans CJ2 4689240 YP_982456.1 CDS Pnap_2227 NC_008781.1 2377942 2378193 R TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: pol:Bpro_2194 thiamineS; molybdopterin converting factor subunit 1 complement(2377942..2378193) Polaromonas naphthalenivorans CJ2 4686909 YP_982457.1 CDS Pnap_2228 NC_008781.1 2378207 2379466 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: pol:Bpro_2193 MoeA-like, domain I and II; molybdenum cofactor synthesis domain-containing protein complement(2378207..2379466) Polaromonas naphthalenivorans CJ2 4687166 YP_982458.1 CDS Pnap_2229 NC_008781.1 2379506 2380042 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: pol:Bpro_2192 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein MobB complement(2379506..2380042) Polaromonas naphthalenivorans CJ2 4690061 YP_982459.1 CDS Pnap_2230 NC_008781.1 2380121 2381548 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(2380121..2381548) Polaromonas naphthalenivorans CJ2 4689090 YP_982460.1 CDS Pnap_2231 NC_008781.1 2381548 2382894 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(2381548..2382894) Polaromonas naphthalenivorans CJ2 4686870 YP_982461.1 CDS Pnap_2232 NC_008781.1 2382960 2384183 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(2382960..2384183) Polaromonas naphthalenivorans CJ2 4690071 YP_982462.1 CDS Pnap_2233 NC_008781.1 2384380 2384772 D PFAM: protein of unknown function DUF498; KEGG: pol:Bpro_2188 protein of unknown function DUF498; hypothetical protein 2384380..2384772 Polaromonas naphthalenivorans CJ2 4686054 YP_982463.1 CDS Pnap_2234 NC_008781.1 2384902 2385378 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_2187 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 2384902..2385378 Polaromonas naphthalenivorans CJ2 4686963 YP_982464.1 CDS Pnap_2235 NC_008781.1 2385532 2387217 D PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: pol:Bpro_2186 PhoH-like protein; PhoH family protein 2385532..2387217 Polaromonas naphthalenivorans CJ2 4687504 YP_982465.1 CDS Pnap_2236 NC_008781.1 2387875 2388540 R hypothetical protein complement(2387875..2388540) Polaromonas naphthalenivorans CJ2 4686224 YP_982466.1 CDS Pnap_2237 NC_008781.1 2388552 2388932 R hypothetical protein complement(2388552..2388932) Polaromonas naphthalenivorans CJ2 4689726 YP_982467.1 CDS Pnap_2238 NC_008781.1 2389151 2389708 R hypothetical protein complement(2389151..2389708) Polaromonas naphthalenivorans CJ2 4687069 YP_982468.1 CDS Pnap_2239 NC_008781.1 2389705 2390202 R PFAM: glycoside hydrolase, family 24; KEGG: nmu:Nmul_A1445 glycoside hydrolase, family 24; glycoside hydrolase complement(2389705..2390202) Polaromonas naphthalenivorans CJ2 4688454 YP_982469.1 CDS Pnap_2240 NC_008781.1 2390199 2390531 R hypothetical protein complement(2390199..2390531) Polaromonas naphthalenivorans CJ2 4686237 YP_982470.1 CDS Pnap_2241 NC_008781.1 2390541 2390762 R KEGG: mca:MCA2677 hypothetical protein; hypothetical protein complement(2390541..2390762) Polaromonas naphthalenivorans CJ2 4687513 YP_982471.1 CDS Pnap_2242 NC_008781.1 2390759 2392642 R KEGG: mca:MCA2676 hypothetical protein; hypothetical protein complement(2390759..2392642) Polaromonas naphthalenivorans CJ2 4686195 YP_982472.1 CDS Pnap_2243 NC_008781.1 2392647 2393051 R KEGG: rso:RSc0878 hypothetical protein; hypothetical protein complement(2392647..2393051) Polaromonas naphthalenivorans CJ2 4687298 YP_982473.1 CDS Pnap_2244 NC_008781.1 2393048 2393446 R KEGG: mca:MCA2674 hypothetical protein; hypothetical protein complement(2393048..2393446) Polaromonas naphthalenivorans CJ2 4687848 YP_982474.1 CDS Pnap_2245 NC_008781.1 2393450 2394631 R KEGG: eba:ebA7239 hypothetical protein; hypothetical protein complement(2393450..2394631) Polaromonas naphthalenivorans CJ2 4689193 YP_982475.1 CDS Pnap_2246 NC_008781.1 2394656 2398156 R KEGG: rso:RSc0875 putative transmembrane protein; hypothetical protein complement(2394656..2398156) Polaromonas naphthalenivorans CJ2 4690020 YP_982476.1 CDS Pnap_2247 NC_008781.1 2398163 2398561 R KEGG: dps:DP1592 hypothetical protein; hypothetical protein complement(2398163..2398561) Polaromonas naphthalenivorans CJ2 4689190 YP_982477.1 CDS Pnap_2248 NC_008781.1 2398582 2401326 R TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sas:SAS0944 hypothetical protein; TP901 family phage tail tape measure protein complement(2398582..2401326) Polaromonas naphthalenivorans CJ2 4688657 YP_982478.1 CDS Pnap_2249 NC_008781.1 2401432 2402190 R KEGG: xfa:XF0518 hypothetical protein; hypothetical protein complement(2401432..2402190) Polaromonas naphthalenivorans CJ2 4689352 YP_982479.1 CDS Pnap_2250 NC_008781.1 2402222 2402641 R hypothetical protein complement(2402222..2402641) Polaromonas naphthalenivorans CJ2 4687667 YP_982480.1 CDS Pnap_2251 NC_008781.1 2402642 2402950 R hypothetical protein complement(2402642..2402950) Polaromonas naphthalenivorans CJ2 4686876 YP_982481.1 CDS Pnap_2252 NC_008781.1 2402989 2403351 R KEGG: stm:STM1034 putative RecA/RadA recombinase; putative RecA/RadA recombinase complement(2402989..2403351) Polaromonas naphthalenivorans CJ2 4687781 YP_982482.1 CDS Pnap_2253 NC_008781.1 2403419 2405443 R PFAM: peptidase S14, ClpP; KEGG: stm:STM0912 ATP-dependent protease; peptidase S14, ClpP complement(2403419..2405443) Polaromonas naphthalenivorans CJ2 4689710 YP_982483.1 CDS Pnap_2254 NC_008781.1 2405542 2407131 R TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: xfa:XF0510 hypothetical protein; lambda family phage portal protein complement(2405542..2407131) Polaromonas naphthalenivorans CJ2 4686591 YP_982484.1 CDS Pnap_2255 NC_008781.1 2407141 2407365 R KEGG: eci:UTI89_C5118 hypothetical protein; hypothetical protein complement(2407141..2407365) Polaromonas naphthalenivorans CJ2 4687434 YP_982485.1 CDS Pnap_2256 NC_008781.1 2407418 2407771 R hypothetical protein complement(2407418..2407771) Polaromonas naphthalenivorans CJ2 4686383 YP_982486.1 CDS Pnap_2257 NC_008781.1 2407771 2409948 R PFAM: phage terminase GpA; KEGG: hch:HCH_02894 bacteriophage tail assembly protein; phage terminase GpA complement(2407771..2409948) Polaromonas naphthalenivorans CJ2 4687817 YP_982487.1 CDS Pnap_2258 NC_008781.1 2409948 2410454 R KEGG: hch:HCH_02893 phage DNA packaging protein, Nu1 subunit of terminase; hypothetical protein complement(2409948..2410454) Polaromonas naphthalenivorans CJ2 4687913 YP_982488.1 CDS Pnap_2259 NC_008781.1 2410582 2411361 R KEGG: xfa:XF0515 hypothetical protein; hypothetical protein complement(2410582..2411361) Polaromonas naphthalenivorans CJ2 4688666 YP_982489.1 CDS Pnap_2260 NC_008781.1 2411367 2412200 R KEGG: bbr:BB1683 phage-related hypothetical protein; hypothetical protein complement(2411367..2412200) Polaromonas naphthalenivorans CJ2 4689264 YP_982490.1 CDS Pnap_2261 NC_008781.1 2412209 2412550 R hypothetical protein complement(2412209..2412550) Polaromonas naphthalenivorans CJ2 4690075 YP_982491.1 CDS Pnap_2262 NC_008781.1 2412633 2413163 R hypothetical protein complement(2412633..2413163) Polaromonas naphthalenivorans CJ2 4690137 YP_982492.1 CDS Pnap_2263 NC_008781.1 2413196 2413450 D hypothetical protein 2413196..2413450 Polaromonas naphthalenivorans CJ2 4689719 YP_982493.1 CDS Pnap_2264 NC_008781.1 2413945 2414508 R KEGG: bxe:Bxe_A3088 hypothetical protein; hypothetical protein complement(2413945..2414508) Polaromonas naphthalenivorans CJ2 4689444 YP_982494.1 CDS Pnap_2265 NC_008781.1 2414590 2415114 D KEGG: ecc:c1410 hypothetical protein; hypothetical protein 2414590..2415114 Polaromonas naphthalenivorans CJ2 4688956 YP_982495.1 CDS Pnap_2266 NC_008781.1 2415186 2415707 D hypothetical protein 2415186..2415707 Polaromonas naphthalenivorans CJ2 4689720 YP_982496.1 CDS Pnap_2267 NC_008781.1 2415752 2416297 D KEGG: rpc:RPC_3570 sec-C metal-binding protein; hypothetical protein 2415752..2416297 Polaromonas naphthalenivorans CJ2 4688098 YP_982497.1 CDS Pnap_2268 NC_008781.1 2416574 2416837 D hypothetical protein 2416574..2416837 Polaromonas naphthalenivorans CJ2 4688691 YP_982498.1 CDS Pnap_2269 NC_008781.1 2416834 2417316 D hypothetical protein 2416834..2417316 Polaromonas naphthalenivorans CJ2 4689744 YP_982499.1 CDS Pnap_2270 NC_008781.1 2417313 2417594 D hypothetical protein 2417313..2417594 Polaromonas naphthalenivorans CJ2 4688309 YP_982500.1 CDS Pnap_2271 NC_008781.1 2417591 2417752 D hypothetical protein 2417591..2417752 Polaromonas naphthalenivorans CJ2 4687268 YP_982501.1 CDS Pnap_2272 NC_008781.1 2417764 2418123 D hypothetical protein 2417764..2418123 Polaromonas naphthalenivorans CJ2 4689612 YP_982502.1 CDS Pnap_2273 NC_008781.1 2418120 2418347 D hypothetical protein 2418120..2418347 Polaromonas naphthalenivorans CJ2 4688186 YP_982503.1 CDS Pnap_2274 NC_008781.1 2418344 2419057 D hypothetical protein 2418344..2419057 Polaromonas naphthalenivorans CJ2 4689011 YP_982504.1 CDS Pnap_2275 NC_008781.1 2419102 2420919 D TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: bxe:Bxe_A3097 ParB-like partition protein; parB-like partition proteins 2419102..2420919 Polaromonas naphthalenivorans CJ2 4690168 YP_982505.1 CDS Pnap_2276 NC_008781.1 2420916 2421284 D hypothetical protein 2420916..2421284 Polaromonas naphthalenivorans CJ2 4690083 YP_982506.1 CDS Pnap_2277 NC_008781.1 2421392 2421943 D hypothetical protein 2421392..2421943 Polaromonas naphthalenivorans CJ2 4689476 YP_982507.1 CDS Pnap_2278 NC_008781.1 2422170 2422901 D KEGG: hypothetical protein; hypothetical protein 2422170..2422901 Polaromonas naphthalenivorans CJ2 4688140 YP_982508.1 CDS Pnap_2279 NC_008781.1 2423183 2423695 D hypothetical protein 2423183..2423695 Polaromonas naphthalenivorans CJ2 4687501 YP_982509.1 CDS Pnap_2280 NC_008781.1 2424001 2424351 D KEGG: eba:ebA22 hypothetical protein; hypothetical protein 2424001..2424351 Polaromonas naphthalenivorans CJ2 4688865 YP_982510.1 CDS Pnap_2281 NC_008781.1 2424348 2424821 D hypothetical protein 2424348..2424821 Polaromonas naphthalenivorans CJ2 4690219 YP_982511.1 CDS Pnap_2282 NC_008781.1 2424818 2425156 D hypothetical protein 2424818..2425156 Polaromonas naphthalenivorans CJ2 4689127 YP_982512.1 CDS Pnap_2283 NC_008781.1 2425320 2426315 D PFAM: phage integrase family protein; KEGG: nwi:Nwi_0831 phage integrase; phage integrase family protein 2425320..2426315 Polaromonas naphthalenivorans CJ2 4688581 YP_982513.1 CDS Pnap_2284 NC_008781.1 2426499 2427221 R KEGG: pol:Bpro_2184 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2426499..2427221) Polaromonas naphthalenivorans CJ2 4690119 YP_982514.1 CDS Pnap_2285 NC_008781.1 2427248 2427586 R TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pol:Bpro_2183 ferredoxin, 2Fe-2S type; 2-oxoglutarate ferredoxin oxidoreductase subunit beta complement(2427248..2427586) Polaromonas naphthalenivorans CJ2 4686953 YP_982515.1 CDS hscA NC_008781.1 2427626 2429488 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2427626..2429488) Polaromonas naphthalenivorans CJ2 4686886 YP_982516.1 CDS Pnap_2287 NC_008781.1 2429520 2430038 R TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: pol:Bpro_2181 co-chaperone Hsc20; co-chaperone Hsc20 complement(2429520..2430038) Polaromonas naphthalenivorans CJ2 4687895 YP_982517.1 CDS Pnap_2288 NC_008781.1 2430136 2430459 R TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: pol:Bpro_2180 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA complement(2430136..2430459) Polaromonas naphthalenivorans CJ2 4687782 YP_982518.1 CDS Pnap_2289 NC_008781.1 2430496 2430897 R TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: pol:Bpro_2179 FeS cluster assembly scaffold IscU; scaffold protein complement(2430496..2430897) Polaromonas naphthalenivorans CJ2 4687607 YP_982519.1 CDS Pnap_2290 NC_008781.1 2430965 2432182 R TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pol:Bpro_2178 cysteine desulfurase IscS; cysteine desulfurase IscS complement(2430965..2432182) Polaromonas naphthalenivorans CJ2 4687692 YP_982520.1 CDS Pnap_2291 NC_008781.1 2432256 2432792 R TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: pol:Bpro_2177 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(2432256..2432792) Polaromonas naphthalenivorans CJ2 4687433 YP_982521.1 CDS Pnap_2292 NC_008781.1 2432803 2433054 R hypothetical protein complement(2432803..2433054) Polaromonas naphthalenivorans CJ2 4686536 YP_982522.1 CDS Pnap_2293 NC_008781.1 2433142 2434104 R KEGG: xac:XAC3966 hypothetical protein; hypothetical protein complement(2433142..2434104) Polaromonas naphthalenivorans CJ2 4688510 YP_982523.1 CDS Pnap_2294 NC_008781.1 2434112 2434363 R hypothetical protein complement(2434112..2434363) Polaromonas naphthalenivorans CJ2 4690202 YP_982524.1 CDS Pnap_2295 NC_008781.1 2434578 2435495 D KEGG: tbd:Tbd_0731 hypothetical protein; hypothetical protein 2434578..2435495 Polaromonas naphthalenivorans CJ2 4689348 YP_982525.1 CDS Pnap_2296 NC_008781.1 2435604 2436269 R PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_3008 DsbA oxidoreductase; DSBA oxidoreductase complement(2435604..2436269) Polaromonas naphthalenivorans CJ2 4688727 YP_982526.1 CDS Pnap_2297 NC_008781.1 2436399 2437757 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pol:Bpro_1210 beta-lactamase-like; beta-lactamase domain-containing protein 2436399..2437757 Polaromonas naphthalenivorans CJ2 4686201 YP_982527.1 CDS Pnap_2298 NC_008781.1 2437771 2438265 R PFAM: UspA domain protein; KEGG: pol:Bpro_1206 UspA; UspA domain-containing protein complement(2437771..2438265) Polaromonas naphthalenivorans CJ2 4687208 YP_982528.1 CDS Pnap_2299 NC_008781.1 2438358 2439362 D PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_1201 putative alcohol dehydrogenase-like oxidoreductase protein; alcohol dehydrogenase 2438358..2439362 Polaromonas naphthalenivorans CJ2 4688728 YP_982529.1 CDS Pnap_2300 NC_008781.1 2439538 2440191 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_1200 transport-associated; transporter 2439538..2440191 Polaromonas naphthalenivorans CJ2 4689608 YP_982530.1 CDS Pnap_2301 NC_008781.1 2440243 2440671 D PFAM: heat shock protein Hsp20; KEGG: pol:Bpro_1199 heat shock protein HSP20; heat shock protein Hsp20 2440243..2440671 Polaromonas naphthalenivorans CJ2 4687306 YP_982531.1 CDS Pnap_2302 NC_008781.1 2440683 2441414 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1942 ABC transporter related; ABC transporter-like protein 2440683..2441414 Polaromonas naphthalenivorans CJ2 4687687 YP_982532.1 CDS Pnap_2303 NC_008781.1 2441419 2443785 D PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_1941 protein of unknown function DUF214; hypothetical protein 2441419..2443785 Polaromonas naphthalenivorans CJ2 4689191 YP_982533.1 CDS Pnap_2304 NC_008781.1 2443789 2444979 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rfr:Rfer_1940 secretion protein HlyD; RND family efflux transporter MFP subunit 2443789..2444979 Polaromonas naphthalenivorans CJ2 4688404 YP_982534.1 CDS Pnap_2305 NC_008781.1 2445028 2445954 R PFAM: UspA domain protein; KEGG: pol:Bpro_1168 UspA; UspA domain-containing protein complement(2445028..2445954) Polaromonas naphthalenivorans CJ2 4687022 YP_982535.1 CDS Pnap_2306 NC_008781.1 2446087 2446554 D PFAM: UspA domain protein; KEGG: pol:Bpro_4298 UspA; UspA domain-containing protein 2446087..2446554 Polaromonas naphthalenivorans CJ2 4686362 YP_982536.1 CDS Pnap_2307 NC_008781.1 2446657 2447400 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_4047 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 2446657..2447400 Polaromonas naphthalenivorans CJ2 4689590 YP_982537.1 CDS Pnap_2308 NC_008781.1 2447606 2448181 D PFAM: Chromate transporter; KEGG: pol:Bpro_3026 chromate transporter; chromate transporter 2447606..2448181 Polaromonas naphthalenivorans CJ2 4686361 YP_982538.1 CDS Pnap_2309 NC_008781.1 2448178 2448762 D PFAM: Chromate transporter; KEGG: pol:Bpro_3027 chromate transporter; chromate transporter 2448178..2448762 Polaromonas naphthalenivorans CJ2 4686204 YP_982539.1 CDS Pnap_2310 NC_008781.1 2448960 2450147 D TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: bxe:Bxe_B1438 putative homocitrate synthase; homocitrate synthase 2448960..2450147 Polaromonas naphthalenivorans CJ2 4687767 YP_982540.1 CDS Pnap_2311 NC_008781.1 2450144 2450941 D TIGRFAM: serine O-acetyltransferase; KEGG: mca:MCA1830 serine acetyltransferase; serine O-acetyltransferase 2450144..2450941 Polaromonas naphthalenivorans CJ2 4686941 YP_982541.1 CDS nifW NC_008781.1 2450947 2451288 D associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage; nitrogenase stabilizing/protective protein 2450947..2451288 Polaromonas naphthalenivorans CJ2 4687015 YP_982542.1 CDS Pnap_2313 NC_008781.1 2451308 2452156 D PFAM: electron transfer flavoprotein beta-subunit; KEGG: bxe:Bxe_B1436 electron transfer flavoprotein, fix A (beta subunit); electron transfer flavoprotein subunit beta 2451308..2452156 Polaromonas naphthalenivorans CJ2 4688461 YP_982543.1 CDS Pnap_2314 NC_008781.1 2452153 2453268 D PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: bxe:Bxe_B1435 electron transfer flavoprotein FixB (alpha subunit); electron transfer flavoprotein subunit beta 2452153..2453268 Polaromonas naphthalenivorans CJ2 4688958 YP_982544.1 CDS Pnap_2315 NC_008781.1 2453296 2454606 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: bxe:Bxe_B1434 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 2453296..2454606 Polaromonas naphthalenivorans CJ2 4689868 YP_982545.1 CDS Pnap_2316 NC_008781.1 2454603 2454902 D KEGG: bxe:Bxe_B1433 putative ferredoxin like protein; FixX; putative ferredoxin-like protein FixX 2454603..2454902 Polaromonas naphthalenivorans CJ2 4689894 YP_982546.1 CDS Pnap_2317 NC_008781.1 2454922 2455245 D KEGG: mca:MCA0256 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S 2454922..2455245 Polaromonas naphthalenivorans CJ2 4689670 YP_982547.1 CDS Pnap_2318 NC_008781.1 2455242 2455721 D KEGG: rpc:RPC_4469 tetratricopeptide TPR_2; hypothetical protein 2455242..2455721 Polaromonas naphthalenivorans CJ2 4689426 YP_982548.1 CDS Pnap_2319 NC_008781.1 2455767 2456369 R PFAM: NifQ family protein; KEGG: bxe:Bxe_B1476 putative nitrogen fixation-related protein(NifQ); NifQ family protein complement(2455767..2456369) Polaromonas naphthalenivorans CJ2 4687898 YP_982549.1 CDS Pnap_2320 NC_008781.1 2456382 2456690 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bxe:Bxe_B1475 hypothetical protein; 4Fe-4S ferredoxin complement(2456382..2456690) Polaromonas naphthalenivorans CJ2 4687834 YP_982550.1 CDS Pnap_2321 NC_008781.1 2456711 2456911 R PFAM: protein of unknown function DUF683; KEGG: bxe:Bxe_B1474 hypothetical protein; hypothetical protein complement(2456711..2456911) Polaromonas naphthalenivorans CJ2 4688119 YP_982551.1 CDS Pnap_2322 NC_008781.1 2456914 2457426 R PFAM: protein of unknown function DUF269; KEGG: bxe:Bxe_B1473 hypothetical protein; hypothetical protein complement(2456914..2457426) Polaromonas naphthalenivorans CJ2 4687651 YP_982552.1 CDS Pnap_2323 NC_008781.1 2457423 2457833 R TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: bxe:Bxe_B1472 nitrogen fixation-related protein (NifX); nitrogen fixation protein NifX complement(2457423..2457833) Polaromonas naphthalenivorans CJ2 4686325 YP_982553.1 CDS Pnap_2324 NC_008781.1 2457854 2459269 R functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN complement(2457854..2459269) Polaromonas naphthalenivorans CJ2 4687720 YP_982554.1 CDS Pnap_2325 NC_008781.1 2459297 2460805 R functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE complement(2459297..2460805) Polaromonas naphthalenivorans CJ2 4687799 YP_982555.1 CDS Pnap_2326 NC_008781.1 2461213 2461749 D PFAM: heat shock protein DnaJ domain protein; KEGG: syw:SYNW1328 hypothetical protein; heat shock protein DnaJ domain-containing protein 2461213..2461749 Polaromonas naphthalenivorans CJ2 4688435 YP_982556.1 CDS Pnap_2328 NC_008781.1 2462771 2463673 R PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: rfr:Rfer_1169 H+-transporting two-sector ATPase, gamma subunit; H+-transporting two-sector ATPase subunit gamma complement(2462771..2463673) Polaromonas naphthalenivorans CJ2 4689514 YP_982557.1 CDS Pnap_2329 NC_008781.1 2463670 2465232 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2463670..2465232) Polaromonas naphthalenivorans CJ2 4687923 YP_982558.1 CDS Pnap_2330 NC_008781.1 2465229 2466044 R PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: rfr:Rfer_1167 H+-transporting two-sector ATPase, B/B' subunit; H+-transporting two-sector ATPase subunit B/B' complement(2465229..2466044) Polaromonas naphthalenivorans CJ2 4687023 YP_982559.1 CDS Pnap_2331 NC_008781.1 2466048 2466329 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(2466048..2466329) Polaromonas naphthalenivorans CJ2 4687645 YP_982560.1 CDS Pnap_2332 NC_008781.1 2466371 2467081 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(2466371..2467081) Polaromonas naphthalenivorans CJ2 4689459 YP_982561.1 CDS Pnap_2333 NC_008781.1 2467071 2467391 R KEGG: rfr:Rfer_1164 hypothetical protein; hypothetical protein complement(2467071..2467391) Polaromonas naphthalenivorans CJ2 4688355 YP_982562.1 CDS Pnap_2334 NC_008781.1 2467378 2467713 R TIGRFAM: F0F1-ATPase subunit, putative; KEGG: rfr:Rfer_1163 F0F1-ATPase subunit, putative; F0F1-ATPase complement(2467378..2467713) Polaromonas naphthalenivorans CJ2 4687453 YP_982563.1 CDS Pnap_2335 NC_008781.1 2467706 2468101 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(2467706..2468101) Polaromonas naphthalenivorans CJ2 4686423 YP_982564.1 CDS Pnap_2336 NC_008781.1 2468085 2469509 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(2468085..2469509) Polaromonas naphthalenivorans CJ2 4686297 YP_982565.1 CDS Pnap_2337 NC_008781.1 2469780 2470259 R KEGG: rpa:RPA1927 hypothetical protein; hypothetical protein complement(2469780..2470259) Polaromonas naphthalenivorans CJ2 4686554 YP_982566.1 CDS Pnap_2338 NC_008781.1 2470294 2472009 R PFAM: AAA ATPase, central domain protein; KEGG: mca:MCA0262 ATPase, AAA family; ATPase central domain-containing protein complement(2470294..2472009) Polaromonas naphthalenivorans CJ2 4686187 YP_982567.1 CDS Pnap_2339 NC_008781.1 2472032 2472520 R KEGG: bxe:Bxe_B1469 hypothetical protein; hypothetical protein complement(2472032..2472520) Polaromonas naphthalenivorans CJ2 4686593 YP_982568.1 CDS Pnap_2340 NC_008781.1 2472569 2472808 R KEGG: mca:MCA0224 hypothetical protein; hypothetical protein complement(2472569..2472808) Polaromonas naphthalenivorans CJ2 4686639 YP_982569.1 CDS Pnap_2341 NC_008781.1 2472836 2473153 R KEGG: bxe:Bxe_B1468 hypothetical protein; hypothetical protein complement(2472836..2473153) Polaromonas naphthalenivorans CJ2 4686239 YP_982570.1 CDS Pnap_2342 NC_008781.1 2473156 2473503 R PFAM: ferredoxin; KEGG: rpe:RPE_1938 ferredoxin; ferredoxin complement(2473156..2473503) Polaromonas naphthalenivorans CJ2 4686662 YP_982571.1 CDS Pnap_2343 NC_008781.1 2473589 2475148 R KEGG: bxe:Bxe_B1467 nitrogenase, molybdenum-iron protein beta chain(NifK); TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase, component 1; nitrogenase molybdenum-iron protein subunit beta complement(2473589..2475148) Polaromonas naphthalenivorans CJ2 4686247 YP_982572.1 CDS Pnap_2344 NC_008781.1 2475245 2476708 R KEGG: bxe:Bxe_B1466 nitrogenase, molybdenum-iron protein alpha chain(NifD); TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1; nitrogenase molybdenum-iron protein subunit alpha complement(2475245..2476708) Polaromonas naphthalenivorans CJ2 4686692 YP_982573.1 CDS nifH NC_008781.1 2476797 2477687 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase complement(2476797..2477687) Polaromonas naphthalenivorans CJ2 4687210 YP_982574.1 CDS Pnap_2346 NC_008781.1 2478071 2478499 D PFAM: globin; KEGG: bxe:Bxe_B1464 putative globin; globin 2478071..2478499 Polaromonas naphthalenivorans CJ2 4687183 YP_982575.1 CDS Pnap_2347 NC_008781.1 2478554 2479162 D KEGG: bxe:Bxe_B1463 hypothetical protein; hypothetical protein 2478554..2479162 Polaromonas naphthalenivorans CJ2 4687155 YP_982576.1 CDS Pnap_2348 NC_008781.1 2479183 2479632 D PFAM: Ankyrin; KEGG: bxe:Bxe_B1462 putative ankyrin repeat protein; ankyrin 2479183..2479632 Polaromonas naphthalenivorans CJ2 4687034 YP_982577.1 CDS Pnap_2349 NC_008781.1 2479626 2481320 D KEGG: mca:MCA0222 hypothetical protein; hypothetical protein 2479626..2481320 Polaromonas naphthalenivorans CJ2 4687024 YP_982578.1 CDS Pnap_2350 NC_008781.1 2481317 2482084 D PFAM: Ankyrin; SMART: Rhodanese domain protein; KEGG: bxe:Bxe_B1461 putative ankyrin repeat protein; ankyrin 2481317..2482084 Polaromonas naphthalenivorans CJ2 4687017 YP_982579.1 CDS Pnap_2351 NC_008781.1 2482095 2482523 D TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: bxe:Bxe_B1460 nitrogenase-associated protein; nitrogenase-associated protein 2482095..2482523 Polaromonas naphthalenivorans CJ2 4686966 YP_982580.1 CDS Pnap_2352 NC_008781.1 2482538 2482789 D TIGRFAM: putative regulatory protein, FmdB family; KEGG: bxe:Bxe_B1459 hypothetical protein; FmdB family regulatory protein 2482538..2482789 Polaromonas naphthalenivorans CJ2 4686949 YP_982581.1 CDS Pnap_2353 NC_008781.1 2482789 2483226 D PFAM: OsmC family protein; KEGG: lpp:lpp1954 hypothetical protein; OsmC family protein 2482789..2483226 Polaromonas naphthalenivorans CJ2 4686925 YP_982582.1 CDS Pnap_2354 NC_008781.1 2483223 2483468 D hypothetical protein 2483223..2483468 Polaromonas naphthalenivorans CJ2 4686860 YP_982583.1 CDS Pnap_2355 NC_008781.1 2483616 2483831 R KEGG: pol:Bpro_4893 hypothetical protein; hypothetical protein complement(2483616..2483831) Polaromonas naphthalenivorans CJ2 4686847 YP_982584.1 CDS Pnap_2356 NC_008781.1 2483828 2484415 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(2483828..2484415) Polaromonas naphthalenivorans CJ2 4687332 YP_982585.1 CDS Pnap_2357 NC_008781.1 2484477 2484995 D PFAM: Redoxin domain protein; KEGG: tbd:Tbd_0272 thioredoxin family protein; redoxin domain-containing protein 2484477..2484995 Polaromonas naphthalenivorans CJ2 4686857 YP_982586.1 CDS Pnap_2358 NC_008781.1 2485143 2485427 D KEGG: cvi:CV3512 probable signal peptide protein; putative signal peptide protein 2485143..2485427 Polaromonas naphthalenivorans CJ2 4687168 YP_982587.1 CDS Pnap_2359 NC_008781.1 2485433 2486368 D PFAM: protein of unknown function DUF692; KEGG: cps:CPS_0811 hypothetical protein; hypothetical protein 2485433..2486368 Polaromonas naphthalenivorans CJ2 4687423 YP_982588.1 CDS Pnap_2360 NC_008781.1 2486365 2487150 D KEGG: cps:CPS_0810 hypothetical protein; hypothetical protein 2486365..2487150 Polaromonas naphthalenivorans CJ2 4687219 YP_982589.1 CDS Pnap_2361 NC_008781.1 2487168 2487650 D PFAM: DoxX family protein; KEGG: cps:CPS_0809 DoxD family protein; DoxX family protein 2487168..2487650 Polaromonas naphthalenivorans CJ2 4687223 YP_982590.1 CDS Pnap_2362 NC_008781.1 2487776 2488543 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2780 ABC transporter related; ABC transporter-like protein complement(2487776..2488543) Polaromonas naphthalenivorans CJ2 4687229 YP_982591.1 CDS Pnap_2363 NC_008781.1 2488567 2489586 R PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein; transport system permease complement(2488567..2489586) Polaromonas naphthalenivorans CJ2 4687486 YP_982592.1 CDS Pnap_2364 NC_008781.1 2489583 2490449 R PFAM: periplasmic binding protein; KEGG: pol:Bpro_2782 periplasmic binding protein; periplasmic-binding protein complement(2489583..2490449) Polaromonas naphthalenivorans CJ2 4687493 YP_982593.1 CDS Pnap_2365 NC_008781.1 2490446 2491039 R PFAM: cobalbumin biosynthesis enzyme; KEGG: pol:Bpro_2783 cobalbumin biosynthesis enzyme; cobalbumin biosynthesis protein complement(2490446..2491039) Polaromonas naphthalenivorans CJ2 4687740 YP_982594.1 CDS Pnap_2366 NC_008781.1 2491032 2491883 R PFAM: periplasmic binding protein; KEGG: pol:Bpro_2784 periplasmic binding protein; periplasmic-binding protein complement(2491032..2491883) Polaromonas naphthalenivorans CJ2 4687728 YP_982595.1 CDS Pnap_2367 NC_008781.1 2491876 2493210 R TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2785 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(2491876..2493210) Polaromonas naphthalenivorans CJ2 4687688 YP_982596.1 CDS Pnap_2368 NC_008781.1 2493213 2495066 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cvi:CV0494 probable outer membrane receptor protein; TonB-dependent receptor, plug complement(2493213..2495066) Polaromonas naphthalenivorans CJ2 4687676 YP_982597.1 CDS Pnap_2369 NC_008781.1 2495476 2495724 D KEGG: pol:Bpro_2787 hypothetical protein; hypothetical protein 2495476..2495724 Polaromonas naphthalenivorans CJ2 4687653 YP_982598.1 CDS Pnap_2370 NC_008781.1 2495721 2496053 D PFAM: protein of unknown function DUF710; KEGG: pol:Bpro_2788 protein of unknown function DUF710; hypothetical protein 2495721..2496053 Polaromonas naphthalenivorans CJ2 4687993 YP_982599.1 CDS Pnap_2371 NC_008781.1 2496363 2497178 D PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_2628 protein of unknown function DUF81; hypothetical protein 2496363..2497178 Polaromonas naphthalenivorans CJ2 4688062 YP_982600.1 CDS Pnap_2372 NC_008781.1 2497205 2497717 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(2497205..2497717) Polaromonas naphthalenivorans CJ2 4688077 YP_982601.1 CDS Pnap_2373 NC_008781.1 2497957 2498361 D PFAM: SWIB/MDM2 domain protein; KEGG: pol:Bpro_2811 SWIB complex, BAF60b; SWIB/MDM2 domain-containing protein 2497957..2498361 Polaromonas naphthalenivorans CJ2 4688102 YP_982602.1 CDS Pnap_2374 NC_008781.1 2498541 2499395 R PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: pol:Bpro_2174 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B complement(2498541..2499395) Polaromonas naphthalenivorans CJ2 4688124 YP_982603.1 CDS Pnap_2375 NC_008781.1 2499733 2501466 D TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_2173 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase 2499733..2501466 Polaromonas naphthalenivorans CJ2 4688156 YP_982604.1 CDS Pnap_2376 NC_008781.1 2501515 2502210 D TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: pol:Bpro_2170 electron transport complex, RnfABCDGE type, B subunit; RnfABCDGE type electron transport complex subunit B 2501515..2502210 Polaromonas naphthalenivorans CJ2 4688207 YP_982605.1 CDS Pnap_2377 NC_008781.1 2502203 2505577 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mxa:MXAN_2317 sensory box histidine kinase/response regulator; multi-sensor hybrid histidine kinase 2502203..2505577 Polaromonas naphthalenivorans CJ2 4688629 YP_982606.1 CDS Pnap_2378 NC_008781.1 2505629 2506117 R KEGG: pol:Bpro_2168 lactoylglutathione lyase; lactoylglutathione lyase complement(2505629..2506117) Polaromonas naphthalenivorans CJ2 4688730 YP_982607.1 CDS Pnap_2379 NC_008781.1 2506114 2508162 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_2167 carbamoyl-phosphate synthase L chain, ATP-binding; acetyl-CoA carboxylase, biotin carboxylase complement(2506114..2508162) Polaromonas naphthalenivorans CJ2 4688428 YP_982608.1 CDS Pnap_2380 NC_008781.1 2508212 2508973 R PFAM: protein of unknown function DUF218; KEGG: rme:Rmet_4675 protein of unknown function DUF218; hypothetical protein complement(2508212..2508973) Polaromonas naphthalenivorans CJ2 4688527 YP_982609.1 CDS Pnap_2381 NC_008781.1 2509011 2510543 R PFAM: carboxyl transferase; KEGG: pol:Bpro_2164 carboxyl transferase; carboxyl transferase complement(2509011..2510543) Polaromonas naphthalenivorans CJ2 4688520 YP_982610.1 CDS Pnap_2382 NC_008781.1 2510593 2511597 R functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase complement(2510593..2511597) Polaromonas naphthalenivorans CJ2 4688516 YP_982611.1 CDS Pnap_2383 NC_008781.1 2511612 2513768 R MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase complement(2511612..2513768) Polaromonas naphthalenivorans CJ2 4688506 YP_982612.1 CDS Pnap_2384 NC_008781.1 2513937 2514572 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2160 transcriptional regulator, GntR family; GntR family transcriptional regulator 2513937..2514572 Polaromonas naphthalenivorans CJ2 4688494 YP_982613.1 CDS Pnap_2385 NC_008781.1 2514596 2516164 R PFAM: SpoVR family protein; KEGG: pol:Bpro_2159 SpoVR; SpoVR family protein complement(2514596..2516164) Polaromonas naphthalenivorans CJ2 4688474 YP_982614.1 CDS Pnap_2386 NC_008781.1 2516161 2517435 R PFAM: protein of unknown function DUF444; KEGG: pol:Bpro_2158 protein of unknown function DUF444; hypothetical protein complement(2516161..2517435) Polaromonas naphthalenivorans CJ2 4688464 YP_982615.1 CDS Pnap_2387 NC_008781.1 2517498 2519420 R PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: pol:Bpro_2157 putative serine protein kinase, PrkA; putative serine protein kinase PrkA complement(2517498..2519420) Polaromonas naphthalenivorans CJ2 4688441 YP_982616.1 CDS Pnap_2388 NC_008781.1 2519610 2520623 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_2153 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A complement(2519610..2520623) Polaromonas naphthalenivorans CJ2 4688401 YP_982617.1 CDS Pnap_2389 NC_008781.1 2520806 2522605 D PFAM: peptidase M14, carboxypeptidase A; KEGG: pol:Bpro_2152 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 2520806..2522605 Polaromonas naphthalenivorans CJ2 4688378 YP_982618.1 CDS Pnap_2390 NC_008781.1 2522783 2523172 D KEGG: pol:Bpro_2151 hypothetical protein; hypothetical protein 2522783..2523172 Polaromonas naphthalenivorans CJ2 4688776 YP_982619.1 CDS Pnap_2391 NC_008781.1 2523320 2524729 R KEGG: rfr:Rfer_2580 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase complement(2523320..2524729) Polaromonas naphthalenivorans CJ2 4688778 YP_982620.1 CDS rplI NC_008781.1 2524938 2525390 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2524938..2525390) Polaromonas naphthalenivorans CJ2 4688798 YP_982621.1 CDS rpsR NC_008781.1 2525403 2525687 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(2525403..2525687) Polaromonas naphthalenivorans CJ2 4688826 YP_982622.1 CDS Pnap_2394 NC_008781.1 2525698 2526015 R KEGG: pol:Bpro_3036 putative primosomal replication protein; putative primosomal replication protein complement(2525698..2526015) Polaromonas naphthalenivorans CJ2 4688616 YP_982623.1 CDS rpsF NC_008781.1 2526064 2526429 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(2526064..2526429) Polaromonas naphthalenivorans CJ2 4688946 YP_982624.1 CDS Pnap_2396 NC_008781.1 2526501 2528681 R PFAM: Na+/solute symporter; KEGG: pol:Bpro_3039 Na+/solute symporter; Na+/solute symporter complement(2526501..2528681) Polaromonas naphthalenivorans CJ2 4689815 YP_982625.1 CDS Pnap_2397 NC_008781.1 2528684 2528944 R KEGG: pol:Bpro_3040 hypothetical protein; hypothetical protein complement(2528684..2528944) Polaromonas naphthalenivorans CJ2 4686960 YP_982626.1 CDS Pnap_2398 NC_008781.1 2528931 2529794 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_4146 tetratricopeptide TPR_2; hypothetical protein complement(2528931..2529794) Polaromonas naphthalenivorans CJ2 4686256 YP_982627.1 CDS Pnap_2399 NC_008781.1 2529971 2532370 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(2529971..2532370) Polaromonas naphthalenivorans CJ2 4687043 YP_982628.1 CDS Pnap_2400 NC_008781.1 2532550 2533371 D PFAM: protein of unknown function DUF299; KEGG: pol:Bpro_3043 protein of unknown function DUF299; hypothetical protein 2532550..2533371 Polaromonas naphthalenivorans CJ2 4686867 YP_982629.1 CDS Pnap_2401 NC_008781.1 2533623 2534195 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_3044 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 2533623..2534195 Polaromonas naphthalenivorans CJ2 4686328 YP_982630.1 CDS Pnap_2402 NC_008781.1 2534278 2535876 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin; KEGG: pol:Bpro_3045 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2534278..2535876 Polaromonas naphthalenivorans CJ2 4686500 YP_982631.1 CDS Pnap_2403 NC_008781.1 2535955 2536257 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: dar:Daro_1473 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(2535955..2536257) Polaromonas naphthalenivorans CJ2 4686575 YP_982632.1 CDS Pnap_2404 NC_008781.1 2536335 2536979 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: mca:MCA1303 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(2536335..2536979) Polaromonas naphthalenivorans CJ2 4686621 YP_982633.1 CDS Pnap_2405 NC_008781.1 2537271 2537618 D KEGG: reu:Reut_C6168 hypothetical protein; hypothetical protein 2537271..2537618 Polaromonas naphthalenivorans CJ2 4686770 YP_982634.1 CDS Pnap_2406 NC_008781.1 2537615 2538601 D KEGG: reu:Reut_C6169 putative poly-gamma-glutamate biosynthesis enzyme; putative poly-gamma-glutamate biosynthesis enzyme 2537615..2538601 Polaromonas naphthalenivorans CJ2 4686840 YP_982635.1 CDS Pnap_2407 NC_008781.1 2538902 2540155 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_2361 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 2538902..2540155 Polaromonas naphthalenivorans CJ2 4687013 YP_982636.1 CDS Pnap_2408 NC_008781.1 2540291 2542936 D PFAM: pentapeptide repeat protein; KEGG: gvi:gll2892 hypothetical protein; pentapeptide repeat-containing protein 2540291..2542936 Polaromonas naphthalenivorans CJ2 4686924 YP_982637.1 CDS Pnap_2409 NC_008781.1 2543124 2545781 D PFAM: pentapeptide repeat protein; KEGG: tel:tll0709 hypothetical protein; pentapeptide repeat-containing protein 2543124..2545781 Polaromonas naphthalenivorans CJ2 4686892 YP_982638.1 CDS Pnap_2410 NC_008781.1 2545878 2549153 D PFAM: NHL repeat containing protein; KEGG: bur:Bcep18194_C7374 YadA/haemagluttinin like protein; NHL repeat-containing protein 2545878..2549153 Polaromonas naphthalenivorans CJ2 4687002 YP_982639.1 CDS Pnap_2411 NC_008781.1 2549257 2549565 R KEGG: pol:Bpro_2360 hypothetical protein; hypothetical protein complement(2549257..2549565) Polaromonas naphthalenivorans CJ2 4687053 YP_982640.1 CDS Pnap_2412 NC_008781.1 2549679 2550227 R PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_2358 DsbA oxidoreductase; DSBA oxidoreductase complement(2549679..2550227) Polaromonas naphthalenivorans CJ2 4687027 YP_982641.1 CDS Pnap_2413 NC_008781.1 2550396 2550608 D hypothetical protein 2550396..2550608 Polaromonas naphthalenivorans CJ2 4687321 YP_982642.1 CDS Pnap_2414 NC_008781.1 2550642 2551019 R KEGG: pol:Bpro_2356 hypothetical protein; hypothetical protein complement(2550642..2551019) Polaromonas naphthalenivorans CJ2 4686973 YP_982643.1 CDS Pnap_2415 NC_008781.1 2551442 2551666 R PFAM: TOBE domain protein; KEGG: rfr:Rfer_1774 molybdenum-pterin binding domain; TOBE domain-containing protein complement(2551442..2551666) Polaromonas naphthalenivorans CJ2 4686938 YP_982644.1 CDS Pnap_2416 NC_008781.1 2551777 2552589 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1775 ABC transporter related; ABC transporter-like protein complement(2551777..2552589) Polaromonas naphthalenivorans CJ2 4686855 YP_982645.1 CDS Pnap_2417 NC_008781.1 2552599 2553501 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1776 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2552599..2553501) Polaromonas naphthalenivorans CJ2 4686836 YP_982646.1 CDS Pnap_2418 NC_008781.1 2553523 2554686 R catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase complement(2553523..2554686) Polaromonas naphthalenivorans CJ2 4687458 YP_982647.1 CDS Pnap_2419 NC_008781.1 2554706 2555755 R TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_1778 ABC transporter, substrate-binding protein, aliphatic sulphonates; aliphatic sulfonates ABC transporter substrate-binding protein complement(2554706..2555755) Polaromonas naphthalenivorans CJ2 4687479 YP_982648.1 CDS Pnap_2420 NC_008781.1 2555781 2556803 R KEGG: reu:Reut_A1977 ABC transporter, substrate-binding protein, aliphatic sulphonates; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NLPA lipoprotein; Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3; aliphatic sulfonates ABC transporter substrate-binding protein complement(2555781..2556803) Polaromonas naphthalenivorans CJ2 4687537 YP_982649.1 CDS Pnap_2421 NC_008781.1 2556926 2557525 R PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rfr:Rfer_1780 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(2556926..2557525) Polaromonas naphthalenivorans CJ2 4687702 YP_982650.1 CDS Pnap_2422 NC_008781.1 2557586 2558617 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2345 thiosulphate-binding protein; sulfate ABC transporter substrate-binding protein complement(2557586..2558617) Polaromonas naphthalenivorans CJ2 4688329 YP_982651.1 CDS Pnap_2423 NC_008781.1 2558764 2559045 D PFAM: Fe(II) trafficking protein YggX; KEGG: pol:Bpro_2344 Fe(II) trafficking protein YggX; hypothetical protein 2558764..2559045 Polaromonas naphthalenivorans CJ2 4687639 YP_982652.1 CDS Pnap_2424 NC_008781.1 2559055 2560968 D PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: pol:Bpro_2343 protein of unknown function DUF752; hypothetical protein 2559055..2560968 Polaromonas naphthalenivorans CJ2 4687602 YP_982653.1 CDS Pnap_2425 NC_008781.1 2561038 2562273 R KEGG: pol:Bpro_2341 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(2561038..2562273) Polaromonas naphthalenivorans CJ2 4688022 YP_982654.1 CDS Pnap_2426 NC_008781.1 2562506 2563297 D PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_2340 protein of unknown function DUF81; hypothetical protein 2562506..2563297 Polaromonas naphthalenivorans CJ2 4688050 YP_982655.1 CDS Pnap_2427 NC_008781.1 2563389 2565197 D PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pol:Bpro_2339 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like; nitrite/sulfite reductase hemoprotein subunit beta 2563389..2565197 Polaromonas naphthalenivorans CJ2 4688129 YP_982656.1 CDS Pnap_2428 NC_008781.1 2565236 2565637 D PFAM: Uncharacterised conserved protein UCP030820; KEGG: pol:Bpro_2338 hypothetical protein; hypothetical protein 2565236..2565637 Polaromonas naphthalenivorans CJ2 4687909 YP_982657.1 CDS Pnap_2429 NC_008781.1 2565649 2566443 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pol:Bpro_2337 phosphoadenylyl-sulfate reductase (thioredoxin); phosphoadenylyl-sulfate reductase 2565649..2566443 Polaromonas naphthalenivorans CJ2 4688285 YP_982658.1 CDS Pnap_2430 NC_008781.1 2566440 2567393 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 2566440..2567393 Polaromonas naphthalenivorans CJ2 4688302 YP_982659.1 CDS Pnap_2431 NC_008781.1 2567393 2568709 D KEGG: pol:Bpro_2335 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; sulfate adenylyltransferase large subunit 2567393..2568709 Polaromonas naphthalenivorans CJ2 4688518 YP_982660.1 CDS Pnap_2432 NC_008781.1 2568881 2569210 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_2334 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 2568881..2569210 Polaromonas naphthalenivorans CJ2 4688492 YP_982661.1 CDS Pnap_2433 NC_008781.1 2569288 2570388 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_2333 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2569288..2570388 Polaromonas naphthalenivorans CJ2 4688463 YP_982662.1 CDS Pnap_2434 NC_008781.1 2570465 2571769 D PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: pol:Bpro_2332 permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 2570465..2571769 Polaromonas naphthalenivorans CJ2 4689050 YP_982663.1 CDS Pnap_2435 NC_008781.1 2571753 2572610 R KEGG: pol:Bpro_2331 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase complement(2571753..2572610) Polaromonas naphthalenivorans CJ2 4689073 YP_982664.1 CDS Pnap_2436 NC_008781.1 2573052 2574605 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: pol:Bpro_2698 protein of unknown function UPF0031; carbohydrate kinase 2573052..2574605 Polaromonas naphthalenivorans CJ2 4688479 YP_982665.1 CDS Pnap_2437 NC_008781.1 2574602 2575171 R PFAM: protein of unknown function YGGT; KEGG: pol:Bpro_2699 protein of unknown function YGGT; hypothetical protein complement(2574602..2575171) Polaromonas naphthalenivorans CJ2 4688481 YP_982666.1 CDS Pnap_2438 NC_008781.1 2575213 2577372 R KEGG: pol:Bpro_2700 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; ribonuclease R complement(2575213..2577372) Polaromonas naphthalenivorans CJ2 4688783 YP_982667.1 CDS rimO NC_008781.1 2578044 2579429 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(2578044..2579429) Polaromonas naphthalenivorans CJ2 4689340 YP_982668.1 CDS Pnap_2440 NC_008781.1 2579464 2581086 D PFAM: Recombinase; KEGG: ppu:PP_3026 phage recombinase, putative; recombinase 2579464..2581086 Polaromonas naphthalenivorans CJ2 4688793 YP_982669.1 CDS Pnap_2441 NC_008781.1 2581460 2581774 D hypothetical protein 2581460..2581774 Polaromonas naphthalenivorans CJ2 4688371 YP_982670.1 CDS Pnap_2442 NC_008781.1 2581894 2583060 D PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_5696 AAA ATPase, central region; ATPase central domain-containing protein 2581894..2583060 Polaromonas naphthalenivorans CJ2 4688973 YP_982671.1 CDS Pnap_2443 NC_008781.1 2583057 2585276 D KEGG: pfo:Pfl_5697 hypothetical protein; hypothetical protein 2583057..2585276 Polaromonas naphthalenivorans CJ2 4688975 YP_982672.1 CDS Pnap_2444 NC_008781.1 2585330 2586121 D KEGG: vpa:VP1081 hypothetical protein; ECF subfamily RNA polymerase sigma-24 factor 2585330..2586121 Polaromonas naphthalenivorans CJ2 4689034 YP_982673.1 CDS Pnap_2445 NC_008781.1 2586118 2586711 D KEGG: vpa:VP1082 hypothetical protein; hypothetical protein 2586118..2586711 Polaromonas naphthalenivorans CJ2 4689102 YP_982674.1 CDS Pnap_2446 NC_008781.1 2586714 2590139 D PFAM: UvrD/REP helicase; protein of unknown function DUF955; KEGG: vpa:VP1083 putative ATP-dependent DNA helicase; UvrD/REP helicase 2586714..2590139 Polaromonas naphthalenivorans CJ2 4689128 YP_982675.1 CDS Pnap_2447 NC_008781.1 2590232 2591161 D KEGG: ana:alr7503 unknown protein; hypothetical protein 2590232..2591161 Polaromonas naphthalenivorans CJ2 4689132 YP_982676.1 CDS Pnap_2448 NC_008781.1 2591158 2592567 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ana:alr7504 unknown protein; UBA/THIF-type NAD/FAD-binding protein 2591158..2592567 Polaromonas naphthalenivorans CJ2 4689939 YP_982677.1 CDS Pnap_2449 NC_008781.1 2592632 2592910 D KEGG: hne:HNE_2548 hypothetical protein; hypothetical protein 2592632..2592910 Polaromonas naphthalenivorans CJ2 4689790 YP_982678.1 CDS Pnap_2450 NC_008781.1 2594155 2594577 R KEGG: rfr:Rfer_2538 hypothetical protein; hypothetical protein complement(2594155..2594577) Polaromonas naphthalenivorans CJ2 4689822 YP_982679.1 CDS Pnap_2452 NC_008781.1 2595386 2596024 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: eba:ebA1379 maleylpyruvate isomerase; maleylacetoacetate isomerase complement(2595386..2596024) Polaromonas naphthalenivorans CJ2 4689173 YP_982680.1 CDS Pnap_2453 NC_008781.1 2596034 2596735 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA1377 fumarylpyruvate hydrolase; fumarylacetoacetate (FAA) hydrolase complement(2596034..2596735) Polaromonas naphthalenivorans CJ2 4689861 YP_982681.1 CDS Pnap_2454 NC_008781.1 2596829 2597884 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: eba:ebA1373 gentisate 1,2-dioxygenase; cupin complement(2596829..2597884) Polaromonas naphthalenivorans CJ2 4689045 YP_982682.1 CDS Pnap_2455 NC_008781.1 2597903 2598493 R KEGG: dar:Daro_2767 hemerythrin HHE cation binding region; hemerythrin HHE cation-binding region complement(2597903..2598493) Polaromonas naphthalenivorans CJ2 4689066 YP_982683.1 CDS Pnap_2456 NC_008781.1 2598530 2599243 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0990 ABC transporter related; ABC transporter-like protein complement(2598530..2599243) Polaromonas naphthalenivorans CJ2 4689048 YP_982684.1 CDS Pnap_2457 NC_008781.1 2599246 2599998 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0989 ABC transporter related; ABC transporter-like protein complement(2599246..2599998) Polaromonas naphthalenivorans CJ2 4689488 YP_982685.1 CDS Pnap_2458 NC_008781.1 2599995 2600951 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_0988 inner-membrane translocator; inner-membrane translocator complement(2599995..2600951) Polaromonas naphthalenivorans CJ2 4689529 YP_982686.1 CDS Pnap_2459 NC_008781.1 2600948 2601874 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_0987 inner-membrane translocator; inner-membrane translocator complement(2600948..2601874) Polaromonas naphthalenivorans CJ2 4689561 YP_982687.1 CDS Pnap_2460 NC_008781.1 2601874 2603046 R KEGG: pol:Bpro_0986 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(2601874..2603046) Polaromonas naphthalenivorans CJ2 4689580 YP_982688.1 CDS Pnap_2461 NC_008781.1 2603082 2603396 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B4721 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(2603082..2603396) Polaromonas naphthalenivorans CJ2 4689689 YP_982689.1 CDS Pnap_2462 NC_008781.1 2603406 2603735 R KEGG: pol:Bpro_0984 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta complement(2603406..2603735) Polaromonas naphthalenivorans CJ2 4689306 YP_982690.1 CDS Pnap_2464 NC_008781.1 2604381 2605148 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 2604381..2605148 Polaromonas naphthalenivorans CJ2 4689722 YP_982691.1 CDS Pnap_2465 NC_008781.1 2605625 2606584 R PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase; proline dehydrogenase complement(2605625..2606584) Polaromonas naphthalenivorans CJ2 4689860 YP_982692.1 CDS Pnap_2466 NC_008781.1 2606589 2607230 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2606589..2607230) Polaromonas naphthalenivorans CJ2 4689882 YP_982693.1 CDS Pnap_2467 NC_008781.1 2607554 2608363 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B4 IstB transposition helper protein; ATP-binding domain-containing protein IstB complement(2607554..2608363) Polaromonas naphthalenivorans CJ2 4689923 YP_982694.1 CDS Pnap_2468 NC_008781.1 2608360 2609904 R PFAM: Integrase, catalytic region; KEGG: mxa:MXAN_3613 transposase, IS21 family; integrase catalytic subunit complement(2608360..2609904) Polaromonas naphthalenivorans CJ2 4690034 YP_982695.1 CDS Pnap_2469 NC_008781.1 2609888 2610199 R hypothetical protein complement(2609888..2610199) Polaromonas naphthalenivorans CJ2 4690211 YP_982696.1 CDS Pnap_2470 NC_008781.1 2610519 2610821 R KEGG: nha:Nham_2790 recombinase; recombinase complement(2610519..2610821) Polaromonas naphthalenivorans CJ2 4690128 YP_982697.1 CDS Pnap_2471 NC_008781.1 2610961 2611353 R PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_3061 transposase IS3/IS911; transposase IS3/IS911 family protein complement(2610961..2611353) Polaromonas naphthalenivorans CJ2 4690093 YP_982698.1 CDS Pnap_2472 NC_008781.1 2611702 2612736 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rfr:Rfer_2266 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(2611702..2612736) Polaromonas naphthalenivorans CJ2 4690069 YP_982699.1 CDS Pnap_2473 NC_008781.1 2612897 2613175 D KEGG: hypothetical protein; hypothetical protein 2612897..2613175 Polaromonas naphthalenivorans CJ2 4690042 YP_982700.1 CDS Pnap_2474 NC_008781.1 2613247 2614116 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA5616 probable maleylpyruvate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(2613247..2614116) Polaromonas naphthalenivorans CJ2 4689298 YP_982701.1 CDS Pnap_2476 NC_008781.1 2614388 2615392 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: eba:ebA1373 gentisate 1,2-dioxygenase; cupin complement(2614388..2615392) Polaromonas naphthalenivorans CJ2 4689600 YP_982702.1 CDS Pnap_2477 NC_008781.1 2615493 2616098 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_C1190 glutathione S-transferase (BphK); glutathione S-transferase domain-containing protein complement(2615493..2616098) Polaromonas naphthalenivorans CJ2 4689603 YP_982703.1 CDS Pnap_2478 NC_008781.1 2616304 2616897 R PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_2632 DsbA oxidoreductase; DSBA oxidoreductase complement(2616304..2616897) Polaromonas naphthalenivorans CJ2 4689576 YP_982704.1 CDS Pnap_2479 NC_008781.1 2617087 2618124 R PFAM: dihydrodipicolinate synthetase; KEGG: mmc:Mmcs_1629 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(2617087..2618124) Polaromonas naphthalenivorans CJ2 4689269 YP_982705.1 CDS Pnap_2480 NC_008781.1 2618182 2618817 R PFAM: OmpW family protein; KEGG: bxe:Bxe_C1185 outer membrane protein (porin), OmpW family; OmpW family protein complement(2618182..2618817) Polaromonas naphthalenivorans CJ2 4689265 YP_982706.1 CDS Pnap_2481 NC_008781.1 2618892 2619800 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmc:Mmcs_1630 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2618892..2619800) Polaromonas naphthalenivorans CJ2 4689545 YP_982707.1 CDS Pnap_2482 NC_008781.1 2619826 2621277 R PFAM: aldehyde dehydrogenase; KEGG: mlo:mll7197 dehydrogenase; aldehyde dehydrogenase complement(2619826..2621277) Polaromonas naphthalenivorans CJ2 4689246 YP_982708.1 CDS Pnap_2483 NC_008781.1 2621326 2622105 R Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase complement(2621326..2622105) Polaromonas naphthalenivorans CJ2 4689496 YP_982709.1 CDS Pnap_2484 NC_008781.1 2622169 2622753 R PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: ssn:SSO_2621 small terminal subunit of phenylpropionate dioxygenase; aromatic-ring-hydroxylating dioxygenase subunit beta complement(2622169..2622753) Polaromonas naphthalenivorans CJ2 4689198 YP_982710.1 CDS Pnap_2485 NC_008781.1 2622768 2624111 R PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: sbo:SBO_2562 large terminal subunit of phenylpropionate dioxygenase; ring hydroxylating dioxygenase subunit alpha complement(2622768..2624111) Polaromonas naphthalenivorans CJ2 4689446 YP_982711.1 CDS Pnap_2486 NC_008781.1 2624176 2624514 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B4721 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(2624176..2624514) Polaromonas naphthalenivorans CJ2 4689178 YP_982712.1 CDS Pnap_2487 NC_008781.1 2624524 2625009 R PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: pol:Bpro_0984 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta complement(2624524..2625009) Polaromonas naphthalenivorans CJ2 4689395 YP_982713.1 CDS Pnap_2488 NC_008781.1 2625012 2626274 R PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0983 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(2625012..2626274) Polaromonas naphthalenivorans CJ2 4689077 YP_982714.1 CDS Pnap_2489 NC_008781.1 2626320 2627306 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_0980 oxidoreductase FAD-binding region; oxidoreductase FAD-binding subunit complement(2626320..2627306) Polaromonas naphthalenivorans CJ2 4689106 YP_982715.1 CDS Pnap_2490 NC_008781.1 2627423 2628379 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0979 transcriptional regulator, LysR family; LysR family transcriptional regulator 2627423..2628379 Polaromonas naphthalenivorans CJ2 4689134 YP_982716.1 CDS Pnap_2491 NC_008781.1 2628931 2629539 D hypothetical protein 2628931..2629539 Polaromonas naphthalenivorans CJ2 4689368 YP_982717.1 CDS Pnap_2492 NC_008781.1 2629576 2630334 D hypothetical protein 2629576..2630334 Polaromonas naphthalenivorans CJ2 4689143 YP_982718.1 CDS Pnap_2493 NC_008781.1 2630331 2630942 D hypothetical protein 2630331..2630942 Polaromonas naphthalenivorans CJ2 4689346 YP_982719.1 CDS Pnap_2494 NC_008781.1 2630954 2631538 D PFAM: Lytic transglycosylase, catalytic; KEGG: xfa:XFa0002 conjugal transfer protein; lytic transglycosylase catalytic subunit 2630954..2631538 Polaromonas naphthalenivorans CJ2 4688948 YP_982720.1 CDS Pnap_2495 NC_008781.1 2631468 2632022 R hypothetical protein complement(2631468..2632022) Polaromonas naphthalenivorans CJ2 4688941 YP_982721.1 CDS Pnap_2496 NC_008781.1 2632055 2632411 R hypothetical protein complement(2632055..2632411) Polaromonas naphthalenivorans CJ2 4688665 YP_982722.1 CDS Pnap_2497 NC_008781.1 2632633 2633598 D PFAM: type II secretion system protein E; KEGG: dps:DPPB12 probable conjugal transfer protein TrbB; type II secretion system protein E 2632633..2633598 Polaromonas naphthalenivorans CJ2 4688883 YP_982723.1 CDS Pnap_2498 NC_008781.1 2633963 2634217 D hypothetical protein 2633963..2634217 Polaromonas naphthalenivorans CJ2 4688875 YP_982724.1 CDS Pnap_2499 NC_008781.1 2634497 2635378 D KEGG: tbd:Tbd_0930 hypothetical protein; hypothetical protein 2634497..2635378 Polaromonas naphthalenivorans CJ2 4686219 YP_982725.1 CDS Pnap_2500 NC_008781.1 2635393 2635536 R KEGG: eba:ebB17 hypothetical protein; hypothetical protein complement(2635393..2635536) Polaromonas naphthalenivorans CJ2 4688006 YP_982726.1 CDS Pnap_2501 NC_008781.1 2635951 2636292 D PFAM: Conjugal transfer protein TrbC; KEGG: ret:RHE_PA00177 conjugal transfer protein C; conjugal transfer protein TrbC 2635951..2636292 Polaromonas naphthalenivorans CJ2 4688682 YP_982727.1 CDS Pnap_2502 NC_008781.1 2636319 2636642 D PFAM: Conjugal transfer TrbD family protein; KEGG: atc:AGR_pTi_85 probable TrbD gene; conjugal transfer TrbD family protein 2636319..2636642 Polaromonas naphthalenivorans CJ2 4689500 YP_982728.1 CDS Pnap_2503 NC_008781.1 2636646 2639090 D PFAM: CagE, TrbE, VirB component of type IV transporter system; SMART: AAA ATPase; KEGG: nha:Nham_4566 type IV secretion/conjugal transfer ATPase, VirB4 family; CagE, TrbE, VirB component of type IV transporter system 2636646..2639090 Polaromonas naphthalenivorans CJ2 4689677 YP_982729.1 CDS Pnap_2504 NC_008781.1 2639249 2639950 D KEGG: nha:Nham_4565 conjugal transfer protein TrbJ; conjugal transfer protein TrbJ 2639249..2639950 Polaromonas naphthalenivorans CJ2 4689125 YP_982730.1 CDS Pnap_2505 NC_008781.1 2639965 2641590 D KEGG: bms:BRA0366 trbL protein; Type IV secretory pathway TrbL components-like protein 2639965..2641590 Polaromonas naphthalenivorans CJ2 4688367 YP_982731.1 CDS Pnap_2506 NC_008781.1 2641600 2643099 D hypothetical protein 2641600..2643099 Polaromonas naphthalenivorans CJ2 4687850 YP_982732.1 CDS Pnap_2507 NC_008781.1 2643196 2644107 R hypothetical protein complement(2643196..2644107) Polaromonas naphthalenivorans CJ2 4686314 YP_982733.1 CDS Pnap_2508 NC_008781.1 2644104 2645297 R hypothetical protein complement(2644104..2645297) Polaromonas naphthalenivorans CJ2 4686068 YP_982734.1 CDS Pnap_2509 NC_008781.1 2645366 2646019 D PFAM: Conjugal transfer protein; KEGG: nha:Nham_4562 conjugal transfer protein; conjugal transfer protein 2645366..2646019 Polaromonas naphthalenivorans CJ2 4686081 YP_982735.1 CDS Pnap_2510 NC_008781.1 2646379 2647161 D PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bam:Bamb_6630 conjugal transfer protein TrbG/VirB9/CagX; conjugal transfer protein TrbG/VirB9/CagX 2646379..2647161 Polaromonas naphthalenivorans CJ2 4686099 YP_982736.1 CDS Pnap_2511 NC_008781.1 2647158 2648630 D PFAM: conjugation TrbI family protein; KEGG: ret:RHE_PA00169 conjugal transfer protein I; conjugation TrbI family protein 2647158..2648630 Polaromonas naphthalenivorans CJ2 4686117 YP_982737.1 CDS Pnap_2512 NC_008781.1 2648780 2649514 R PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rfr:Rfer_1597 cytochrome c biogenesis protein, transmembrane protein; cytochrome c biogenesis protein transmembrane subunit complement(2648780..2649514) Polaromonas naphthalenivorans CJ2 4686135 YP_982738.1 CDS Pnap_2513 NC_008781.1 2649527 2649907 R PFAM: Thioredoxin domain; KEGG: rfr:Rfer_1598 hypothetical protein; thioredoxin domain-containing protein complement(2649527..2649907) Polaromonas naphthalenivorans CJ2 4686533 YP_982739.1 CDS Pnap_2514 NC_008781.1 2650031 2650564 D KEGG: pol:Bpro_5539 transposase, IS204/IS1001/IS1096/IS1165; hypothetical protein 2650031..2650564 Polaromonas naphthalenivorans CJ2 4686214 YP_982740.1 CDS Pnap_2515 NC_008781.1 2650603 2651211 D PFAM: regulatory protein, TetR; KEGG: pol:Bpro_5551 transcriptional regulator, TetR family; TetR family transcriptional regulator 2650603..2651211 Polaromonas naphthalenivorans CJ2 4687222 YP_982741.1 CDS Pnap_2516 NC_008781.1 2651284 2651871 D KEGG: pol:Bpro_5552 late embryogenesis abundant protein; late embryogenesis abundant protein 2651284..2651871 Polaromonas naphthalenivorans CJ2 4688092 YP_982742.1 CDS Pnap_2517 NC_008781.1 2651981 2652427 D KEGG: pol:Bpro_5553 hypothetical protein; hypothetical protein 2651981..2652427 Polaromonas naphthalenivorans CJ2 4689403 YP_982743.1 CDS Pnap_2518 NC_008781.1 2652625 2653311 D KEGG: pol:Bpro_5554 hypothetical protein; hypothetical protein 2652625..2653311 Polaromonas naphthalenivorans CJ2 4690032 YP_982744.1 CDS Pnap_2519 NC_008781.1 2653326 2655074 D PFAM: ABC-1 domain protein; KEGG: pol:Bpro_5555 ABC-1; hypothetical protein 2653326..2655074 Polaromonas naphthalenivorans CJ2 4689816 YP_982745.1 CDS Pnap_2521 NC_008781.1 2655495 2657105 R PFAM: transposase IS66; KEGG: reu:Reut_C6183 transposase IS66; transposase IS66 complement(2655495..2657105) Polaromonas naphthalenivorans CJ2 4689686 YP_982746.1 CDS Pnap_2522 NC_008781.1 2657188 2657541 R PFAM: IS66 Orf2 family protein; KEGG: reu:Reut_C6378 IS66 Orf2 like; IS66 Orf2 family protein complement(2657188..2657541) Polaromonas naphthalenivorans CJ2 4687658 YP_982747.1 CDS Pnap_2523 NC_008781.1 2657529 2657966 R PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_0340 transposase IS3/IS911; transposase IS3/IS911 family protein complement(2657529..2657966) Polaromonas naphthalenivorans CJ2 4690178 YP_982748.1 CDS phnP NC_008781.1 2659689 2660465 D required for the use of phosphonates and phosphite as phosphorus sources; carbon-phosphorus lyase complex accessory protein 2659689..2660465 Polaromonas naphthalenivorans CJ2 4686053 YP_982749.1 CDS Pnap_2525 NC_008781.1 2660462 2661322 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: tcx:Tcr_2091 hypothetical protein; hypothetical protein 2660462..2661322 Polaromonas naphthalenivorans CJ2 4686349 YP_982750.1 CDS Pnap_2526 NC_008781.1 2661429 2661728 R hypothetical protein complement(2661429..2661728) Polaromonas naphthalenivorans CJ2 4686380 YP_982751.1 CDS Pnap_2527 NC_008781.1 2661836 2662453 D hypothetical protein 2661836..2662453 Polaromonas naphthalenivorans CJ2 4686101 YP_982752.1 CDS Pnap_2528 NC_008781.1 2662475 2663851 D hypothetical protein 2662475..2663851 Polaromonas naphthalenivorans CJ2 4686472 YP_982753.1 CDS Pnap_2529 NC_008781.1 2664051 2665205 D PFAM: domain of unknown function DUF1738; KEGG: reu:Reut_D6521 toprim; hypothetical protein 2664051..2665205 Polaromonas naphthalenivorans CJ2 4686137 YP_982754.1 CDS Pnap_2530 NC_008781.1 2665222 2667207 D PFAM: TRAG family protein; KEGG: mlo:mlr6395 conjugal transfer protein traG; TRAG family protein 2665222..2667207 Polaromonas naphthalenivorans CJ2 4686167 YP_982755.1 CDS Pnap_2531 NC_008781.1 2667227 2667751 D KEGG: ppr:PBPRB1620 hypothetical conjugal transfer protein TraF; conjugal transfer protein TraF 2667227..2667751 Polaromonas naphthalenivorans CJ2 4686189 YP_982756.1 CDS Pnap_2532 NC_008781.1 2667794 2668369 R hypothetical protein complement(2667794..2668369) Polaromonas naphthalenivorans CJ2 4686509 YP_982757.1 CDS Pnap_2533 NC_008781.1 2668994 2670973 R PFAM: Relaxase/mobilization nuclease family protein; KEGG: gme:Gmet_A3574 relaxase/mobilization nuclease domain; relaxase/mobilization nuclease family protein complement(2668994..2670973) Polaromonas naphthalenivorans CJ2 4689979 YP_982758.1 CDS Pnap_2534 NC_008781.1 2671629 2671898 D hypothetical protein 2671629..2671898 Polaromonas naphthalenivorans CJ2 4690226 YP_982759.1 CDS Pnap_2535 NC_008781.1 2671898 2672176 D KEGG: hypothetical protein; hypothetical protein 2671898..2672176 Polaromonas naphthalenivorans CJ2 4689955 YP_982760.1 CDS Pnap_2536 NC_008781.1 2673124 2673738 R TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: pol:Bpro_2702 polyhydroxyalkanoate synthesis repressor PhaR; polyhydroxyalkonate synthesis repressor PhaR complement(2673124..2673738) Polaromonas naphthalenivorans CJ2 4690206 YP_982761.1 CDS Pnap_2537 NC_008781.1 2674053 2676323 R KEGG: pol:Bpro_2703 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA complement(2674053..2676323) Polaromonas naphthalenivorans CJ2 4689692 YP_982762.1 CDS Pnap_2538 NC_008781.1 2676354 2677274 R PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_2704 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2676354..2677274) Polaromonas naphthalenivorans CJ2 4686052 YP_982763.1 CDS Pnap_2539 NC_008781.1 2677400 2678182 D catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 2677400..2678182 Polaromonas naphthalenivorans CJ2 4686072 YP_982764.1 CDS Pnap_2540 NC_008781.1 2678219 2679064 R PFAM: N-formylglutamate amidohydrolase; KEGG: pol:Bpro_2708 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase complement(2678219..2679064) Polaromonas naphthalenivorans CJ2 4686350 YP_982765.1 CDS Pnap_2541 NC_008781.1 2679318 2679908 D PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: pol:Bpro_2709 OmpA-like transmembrane region; OmpA domain-containing protein 2679318..2679908 Polaromonas naphthalenivorans CJ2 4686388 YP_982766.1 CDS Pnap_2542 NC_008781.1 2680164 2680613 D PFAM: transmembrane pair domain protein; KEGG: pol:Bpro_2711 transmembrane pair; transmembrane pair domain-containing protein 2680164..2680613 Polaromonas naphthalenivorans CJ2 4686499 YP_982767.1 CDS Pnap_2543 NC_008781.1 2680622 2681437 R PFAM: metallophosphoesterase; KEGG: rfr:Rfer_2358 metallophosphoesterase; metallophosphoesterase complement(2680622..2681437) Polaromonas naphthalenivorans CJ2 4686461 YP_982768.1 CDS Pnap_2544 NC_008781.1 2681445 2682416 R PFAM: diacylglycerol kinase, catalytic region; KEGG: bpa:BPP3398 hypothetical protein; diacylglycerol kinase catalytic subunit complement(2681445..2682416) Polaromonas naphthalenivorans CJ2 4686438 YP_982769.1 CDS Pnap_2545 NC_008781.1 2682441 2683166 R PFAM: protein of unknown function DUF541; KEGG: pol:Bpro_2712 protein of unknown function DUF541; hypothetical protein complement(2682441..2683166) Polaromonas naphthalenivorans CJ2 4686147 YP_982770.1 CDS ompR NC_008781.1 2683542 2684279 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 2683542..2684279 Polaromonas naphthalenivorans CJ2 4686203 YP_982771.1 CDS Pnap_2547 NC_008781.1 2684388 2685764 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_2714 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2684388..2685764 Polaromonas naphthalenivorans CJ2 4686572 YP_982772.1 CDS Pnap_2548 NC_008781.1 2685857 2686357 R KEGG: pol:Bpro_2715 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase complement(2685857..2686357) Polaromonas naphthalenivorans CJ2 4686223 YP_982773.1 CDS Pnap_2549 NC_008781.1 2686391 2687119 R TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: pol:Bpro_2716 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2686391..2687119) Polaromonas naphthalenivorans CJ2 4686630 YP_982774.1 CDS Pnap_2550 NC_008781.1 2687152 2690637 D KEGG: pol:Bpro_2717 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 2687152..2690637 Polaromonas naphthalenivorans CJ2 4687000 YP_982775.1 CDS Pnap_2551 NC_008781.1 2690686 2690994 D KEGG: pol:Bpro_2718 virulence-associated protein VapB-like; virulence-associated protein VapB-like protein 2690686..2690994 Polaromonas naphthalenivorans CJ2 4687137 YP_982776.1 CDS Pnap_2552 NC_008781.1 2690991 2691449 D PFAM: PilT protein domain protein; KEGG: pol:Bpro_2719 PilT protein-like; PilT domain-containing protein 2690991..2691449 Polaromonas naphthalenivorans CJ2 4686887 YP_982777.1 CDS Pnap_2553 NC_008781.1 2691446 2691709 D hypothetical protein 2691446..2691709 Polaromonas naphthalenivorans CJ2 4687394 YP_982778.1 CDS Pnap_2554 NC_008781.1 2691768 2692478 D KEGG: pol:Bpro_2720 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; phosphoserine phosphatase SerB 2691768..2692478 Polaromonas naphthalenivorans CJ2 4686958 YP_982779.1 CDS Pnap_2555 NC_008781.1 2692491 2693828 R KEGG: rfr:Rfer_3211 hypothetical protein; hypothetical protein complement(2692491..2693828) Polaromonas naphthalenivorans CJ2 4687172 YP_982780.1 CDS Pnap_2556 NC_008781.1 2693915 2694235 R SMART: HNH nuclease; KEGG: pol:Bpro_2722 HNH nuclease; HNH nuclease complement(2693915..2694235) Polaromonas naphthalenivorans CJ2 4687401 YP_982781.1 CDS Pnap_2557 NC_008781.1 2694363 2694839 D TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: pol:Bpro_3046 bacterioferritin; bacterioferritin 2694363..2694839 Polaromonas naphthalenivorans CJ2 4687420 YP_982782.1 CDS Pnap_2558 NC_008781.1 2695115 2697397 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pol:Bpro_3047 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2695115..2697397 Polaromonas naphthalenivorans CJ2 4687234 YP_982783.1 CDS Pnap_2559 NC_008781.1 2697480 2698163 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pol:Bpro_3048 2OG-Fe(II) oxygenase; putative hydroxylase 2697480..2698163 Polaromonas naphthalenivorans CJ2 4687466 YP_982784.1 CDS Pnap_2560 NC_008781.1 2698160 2699350 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3049 FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 2698160..2699350 Polaromonas naphthalenivorans CJ2 4687698 YP_982785.1 CDS Pnap_2561 NC_008781.1 2699606 2700808 D KEGG: pae:PA4370 putative iron-regulated protein; putative iron-regulated protein 2699606..2700808 Polaromonas naphthalenivorans CJ2 4687711 YP_982786.1 CDS Pnap_2562 NC_008781.1 2700819 2702246 D PFAM: protein of unknown function DUF1111; KEGG: pfo:Pfl_4489 protein of unknown function DUF1111; hypothetical protein 2700819..2702246 Polaromonas naphthalenivorans CJ2 4687971 YP_982787.1 CDS Pnap_2563 NC_008781.1 2702243 2703352 D KEGG: rsp:RSP_1544 hypothetical signal peptide protein; periplasmic lipoprotein-like protein 2702243..2703352 Polaromonas naphthalenivorans CJ2 4687996 YP_982788.1 CDS Pnap_2564 NC_008781.1 2703358 2704515 D PFAM: Uncharacterised conserved protein UCP028101; KEGG: dar:Daro_1057 twin-arginine translocation pathway signal; hypothetical protein 2703358..2704515 Polaromonas naphthalenivorans CJ2 4687987 YP_982789.1 CDS Pnap_2565 NC_008781.1 2704756 2704998 R hypothetical protein complement(2704756..2704998) Polaromonas naphthalenivorans CJ2 4688010 YP_982790.1 CDS Pnap_2566 NC_008781.1 2705159 2705428 D hypothetical protein 2705159..2705428 Polaromonas naphthalenivorans CJ2 4687734 YP_982791.1 CDS Pnap_2567 NC_008781.1 2705572 2705805 D KEGG: pol:Bpro_3050 hypothetical protein; hypothetical protein 2705572..2705805 Polaromonas naphthalenivorans CJ2 4688074 YP_982792.1 CDS Pnap_2568 NC_008781.1 2705873 2706643 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pol:Bpro_3051 TonB-like; TonB family protein 2705873..2706643 Polaromonas naphthalenivorans CJ2 4687809 YP_982793.1 CDS Pnap_2569 NC_008781.1 2706666 2707394 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_3052 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2706666..2707394 Polaromonas naphthalenivorans CJ2 4688114 YP_982794.1 CDS Pnap_2570 NC_008781.1 2707397 2707807 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_3053 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2707397..2707807 Polaromonas naphthalenivorans CJ2 4688146 YP_982795.1 CDS Pnap_2571 NC_008781.1 2707819 2708022 D KEGG: pol:Bpro_3054 hypothetical protein; hypothetical protein 2707819..2708022 Polaromonas naphthalenivorans CJ2 4688151 YP_982796.1 CDS Pnap_2572 NC_008781.1 2708202 2708609 R PFAM: protein of unknown function DUF336; KEGG: pol:Bpro_3055 protein of unknown function DUF336; hypothetical protein complement(2708202..2708609) Polaromonas naphthalenivorans CJ2 4687876 YP_982797.1 CDS Pnap_2573 NC_008781.1 2708817 2709509 D PFAM: protein of unknown function UPF0005; KEGG: pol:Bpro_3056 protein of unknown function UPF0005; hypothetical protein 2708817..2709509 Polaromonas naphthalenivorans CJ2 4688717 YP_982798.1 CDS Pnap_2574 NC_008781.1 2709588 2710121 D KEGG: pol:Bpro_5570 transposase and inactivated derivative; transposase and inactivated derivative 2709588..2710121 Polaromonas naphthalenivorans CJ2 4687903 YP_982799.1 CDS Pnap_2575 NC_008781.1 2710126 2710659 D KEGG: pol:Bpro_5569 ISSod10, transposase OrfB; ISSod10, transposase OrfB 2710126..2710659 Polaromonas naphthalenivorans CJ2 4688538 YP_982800.1 CDS rumA NC_008781.1 2710747 2712219 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(2710747..2712219) Polaromonas naphthalenivorans CJ2 4688529 YP_982801.1 CDS Pnap_2577 NC_008781.1 2712352 2713257 R PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: pol:Bpro_3059 peptidase M23B; peptidase M23B complement(2712352..2713257) Polaromonas naphthalenivorans CJ2 4688476 YP_982802.1 CDS Pnap_2578 NC_008781.1 2713322 2714185 R KEGG: pol:Bpro_3060 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase complement(2713322..2714185) Polaromonas naphthalenivorans CJ2 4688449 YP_982803.1 CDS surE NC_008781.1 2714200 2714985 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(2714200..2714985) Polaromonas naphthalenivorans CJ2 4688765 YP_982804.1 CDS Pnap_2580 NC_008781.1 2715138 2716112 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_2783 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 2715138..2716112 Polaromonas naphthalenivorans CJ2 4688790 YP_982805.1 CDS Pnap_2581 NC_008781.1 2716135 2716974 R KEGG: pol:Bpro_2243 hypothetical protein; hypothetical protein complement(2716135..2716974) Polaromonas naphthalenivorans CJ2 4688372 YP_982806.1 CDS Pnap_2582 NC_008781.1 2717087 2717443 R KEGG: pol:Bpro_2242 hypothetical protein; hypothetical protein complement(2717087..2717443) Polaromonas naphthalenivorans CJ2 4688619 YP_982807.1 CDS Pnap_2583 NC_008781.1 2717544 2718482 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pfo:Pfl_1954 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2717544..2718482) Polaromonas naphthalenivorans CJ2 4688810 YP_982808.1 CDS Pnap_2584 NC_008781.1 2718543 2719535 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: zmo:ZMO0867 nucleoside-diphosphate-sugar epimerase; NAD-dependent epimerase/dehydratase 2718543..2719535 Polaromonas naphthalenivorans CJ2 4688627 YP_982809.1 CDS Pnap_2585 NC_008781.1 2719578 2720318 R PFAM: NADPH-dependent FMN reductase; KEGG: pol:Bpro_2220 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(2719578..2720318) Polaromonas naphthalenivorans CJ2 4688851 YP_982810.1 CDS Pnap_2586 NC_008781.1 2720305 2720736 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pol:Bpro_2219 arsenate reductase; arsenate reductase complement(2720305..2720736) Polaromonas naphthalenivorans CJ2 4688646 YP_982811.1 CDS Pnap_2587 NC_008781.1 2720818 2721171 D SMART: regulatory protein, ArsR; KEGG: pol:Bpro_2218 transcriptional regulator, ArsR family; regulatory protein ArsR 2720818..2721171 Polaromonas naphthalenivorans CJ2 4688661 YP_982812.1 CDS Pnap_2588 NC_008781.1 2721267 2721770 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pol:Bpro_2216 protein tyrosine phosphatase; protein tyrosine phosphatase 2721267..2721770 Polaromonas naphthalenivorans CJ2 4688878 YP_982813.1 CDS Pnap_2589 NC_008781.1 2721797 2722849 D TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sde:Sde_3779 arsenical pump membrane protein, putative; arsenical-resistance protein 2721797..2722849 Polaromonas naphthalenivorans CJ2 4688651 YP_982814.1 CDS Pnap_2590 NC_008781.1 2722921 2723442 R PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2214 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2722921..2723442) Polaromonas naphthalenivorans CJ2 4688932 YP_982815.1 CDS Pnap_2591 NC_008781.1 2723682 2725073 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2826 secretion protein HlyD; RND family efflux transporter MFP subunit 2723682..2725073 Polaromonas naphthalenivorans CJ2 4688688 YP_982816.1 CDS Pnap_2592 NC_008781.1 2725070 2728396 D PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2827 acriflavin resistance protein; acriflavin resistance protein 2725070..2728396 Polaromonas naphthalenivorans CJ2 4688945 YP_982817.1 CDS Pnap_2593 NC_008781.1 2729231 2732449 D PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2828 acriflavin resistance protein; acriflavin resistance protein 2729231..2732449 Polaromonas naphthalenivorans CJ2 4689349 YP_982818.1 CDS Pnap_2594 NC_008781.1 2732458 2733891 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2829 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 2732458..2733891 Polaromonas naphthalenivorans CJ2 4689161 YP_982819.1 CDS Pnap_2595 NC_008781.1 2734486 2734878 D hypothetical protein 2734486..2734878 Polaromonas naphthalenivorans CJ2 4689095 YP_982820.1 CDS Pnap_2596 NC_008781.1 2734884 2735189 D KEGG: sde:Sde_0641 hypothetical protein; hypothetical protein 2734884..2735189 Polaromonas naphthalenivorans CJ2 4689366 YP_982821.1 CDS Pnap_2597 NC_008781.1 2735254 2735811 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ade:Adeh_3972 rare lipoprotein A; rare lipoprotein A complement(2735254..2735811) Polaromonas naphthalenivorans CJ2 4689405 YP_982822.1 CDS Pnap_2598 NC_008781.1 2735835 2736122 D hypothetical protein 2735835..2736122 Polaromonas naphthalenivorans CJ2 4689424 YP_982823.1 CDS Pnap_2600 NC_008781.1 2736710 2737114 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vch:VCA0890 glyoxylase I family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2736710..2737114 Polaromonas naphthalenivorans CJ2 4690195 YP_982824.1 CDS Pnap_2601 NC_008781.1 2737166 2738164 R PFAM: PfkB domain protein; KEGG: pol:Bpro_3202 PfkB; ribokinase-like domain-containing protein complement(2737166..2738164) Polaromonas naphthalenivorans CJ2 4689192 YP_982825.1 CDS Pnap_2602 NC_008781.1 2738295 2739293 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_1903 periplasmic binding protein/LacI transcriptional regulator; periplasmic-binding protein/LacI transcriptional regulator 2738295..2739293 Polaromonas naphthalenivorans CJ2 4689450 YP_982826.1 CDS Pnap_2603 NC_008781.1 2739467 2740474 D PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type; porin 2739467..2740474 Polaromonas naphthalenivorans CJ2 4689249 YP_982827.1 CDS Pnap_2604 NC_008781.1 2740617 2741570 D PFAM: inner-membrane translocator; KEGG: rfr:Rfer_1902 inner-membrane translocator; inner-membrane translocator 2740617..2741570 Polaromonas naphthalenivorans CJ2 4689268 YP_982828.1 CDS Pnap_2605 NC_008781.1 2741570 2742361 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1901 ABC transporter related; ABC transporter-like protein 2741570..2742361 Polaromonas naphthalenivorans CJ2 4689559 YP_982829.1 CDS Pnap_2606 NC_008781.1 2742388 2742840 D PFAM: RbsD or FucU transport; KEGG: pol:Bpro_3206 RbsD or FucU transport; transporter 2742388..2742840 Polaromonas naphthalenivorans CJ2 4689254 YP_982830.1 CDS Pnap_2607 NC_008781.1 2742837 2744051 D PFAM: ROK family protein; KEGG: pol:Bpro_3207 hypothetical protein; ROK family protein 2742837..2744051 Polaromonas naphthalenivorans CJ2 4689598 YP_982831.1 CDS Pnap_2608 NC_008781.1 2744275 2745276 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_3203 periplasmic binding protein/LacI transcriptional regulator; periplasmic-binding protein/LacI transcriptional regulator 2744275..2745276 Polaromonas naphthalenivorans CJ2 4689602 YP_982832.1 CDS glmM NC_008781.1 2745429 2746760 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(2745429..2746760) Polaromonas naphthalenivorans CJ2 4690087 YP_982833.1 CDS Pnap_2610 NC_008781.1 2746904 2747755 R KEGG: pol:Bpro_2851 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase complement(2746904..2747755) Polaromonas naphthalenivorans CJ2 4687421 YP_982834.1 CDS Pnap_2611 NC_008781.1 2747862 2749790 R KEGG: pol:Bpro_2852 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(2747862..2749790) Polaromonas naphthalenivorans CJ2 4690067 YP_982835.1 CDS Pnap_2612 NC_008781.1 2749940 2750677 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_2853 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ complement(2749940..2750677) Polaromonas naphthalenivorans CJ2 4690099 YP_982836.1 CDS Pnap_2613 NC_008781.1 2750719 2751195 D PFAM: protein of unknown function UPF0044; KEGG: pol:Bpro_2854 protein of unknown function UPF0044; hypothetical protein 2750719..2751195 Polaromonas naphthalenivorans CJ2 4690100 YP_982837.1 CDS Pnap_2614 NC_008781.1 2751305 2753362 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: pol:Bpro_2855 oligopeptidase A; oligopeptidase A 2751305..2753362 Polaromonas naphthalenivorans CJ2 4690116 YP_982838.1 CDS Pnap_2615 NC_008781.1 2753386 2754075 D PFAM: glutaredoxin; KEGG: pol:Bpro_2856 glutaredoxin; glutaredoxin 2753386..2754075 Polaromonas naphthalenivorans CJ2 4690110 YP_982839.1 CDS Pnap_2616 NC_008781.1 2754113 2754862 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(2754113..2754862) Polaromonas naphthalenivorans CJ2 4690109 YP_982840.1 CDS Pnap_2617 NC_008781.1 2754928 2755980 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2754928..2755980 Polaromonas naphthalenivorans CJ2 4690113 YP_982841.1 CDS Pnap_2618 NC_008781.1 2756243 2757214 D hypothetical protein 2756243..2757214 Polaromonas naphthalenivorans CJ2 4690122 YP_982842.1 CDS Pnap_2619 NC_008781.1 2757211 2757990 D hypothetical protein 2757211..2757990 Polaromonas naphthalenivorans CJ2 4690144 YP_982843.1 CDS Pnap_2620 NC_008781.1 2758057 2758314 R hypothetical protein complement(2758057..2758314) Polaromonas naphthalenivorans CJ2 4690121 YP_982844.1 CDS Pnap_2621 NC_008781.1 2758394 2758990 D PFAM: 3'-5' exonuclease; KEGG: pol:Bpro_2737 3'-5' exonuclease; 3'-5' exonuclease 2758394..2758990 Polaromonas naphthalenivorans CJ2 4690135 YP_982845.1 CDS Pnap_2622 NC_008781.1 2759051 2759689 R KEGG: pol:Bpro_2033 hypothetical protein; hypothetical protein complement(2759051..2759689) Polaromonas naphthalenivorans CJ2 4690125 YP_982846.1 CDS Pnap_2623 NC_008781.1 2759782 2761035 D KEGG: pol:Bpro_2909 putative uncharacterized conserved protein; hypothetical protein 2759782..2761035 Polaromonas naphthalenivorans CJ2 4690174 YP_982847.1 CDS Pnap_2624 NC_008781.1 2761157 2762200 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_0584 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein complement(2761157..2762200) Polaromonas naphthalenivorans CJ2 4689866 YP_982848.1 CDS Pnap_2625 NC_008781.1 2762407 2763798 D TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: rfr:Rfer_0585 amino acid permease-associated protein; ethanolamine transporter 2762407..2763798 Polaromonas naphthalenivorans CJ2 4690197 YP_982849.1 CDS Pnap_2626 NC_008781.1 2763806 2765203 D PFAM: Ethanolamine ammonia lyase large subunit; KEGG: rfr:Rfer_0586 ethanolamine ammonia lyase large subunit; ethanolamine ammonia lyase large subunit 2763806..2765203 Polaromonas naphthalenivorans CJ2 4689853 YP_982850.1 CDS Pnap_2627 NC_008781.1 2765226 2766086 D catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 2765226..2766086 Polaromonas naphthalenivorans CJ2 4690035 YP_982851.1 CDS alaS NC_008781.1 2766092 2768716 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2766092..2768716) Polaromonas naphthalenivorans CJ2 4689953 YP_982852.1 CDS Pnap_2629 NC_008781.1 2768789 2770180 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rfr:Rfer_0591 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2768789..2770180) Polaromonas naphthalenivorans CJ2 4689830 YP_982853.1 CDS Pnap_2630 NC_008781.1 2770364 2771656 D TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: rfr:Rfer_0592 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase 2770364..2771656 Polaromonas naphthalenivorans CJ2 4689982 YP_982854.1 CDS Pnap_2631 NC_008781.1 2771720 2772796 D KEGG: rfr:Rfer_0593 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 2771720..2772796 Polaromonas naphthalenivorans CJ2 4689838 YP_982855.1 CDS Pnap_2632 NC_008781.1 2772865 2773896 D PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_0594 extracellular solute-binding protein, family 1; extracellular solute-binding protein 2772865..2773896 Polaromonas naphthalenivorans CJ2 4689935 YP_982856.1 CDS Pnap_2633 NC_008781.1 2773927 2775198 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0595 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2773927..2775198 Polaromonas naphthalenivorans CJ2 4689944 YP_982857.1 CDS Pnap_2634 NC_008781.1 2775206 2776033 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0596 binding-protein-dependent transport systems inner membrane component; Fis family transcriptional regulator 2775206..2776033 Polaromonas naphthalenivorans CJ2 4689802 YP_982858.1 CDS Pnap_2635 NC_008781.1 2776062 2777009 D TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rfr:Rfer_0597 agmatinase, putative; putative agmatinase 2776062..2777009 Polaromonas naphthalenivorans CJ2 4689749 YP_982859.1 CDS Pnap_2636 NC_008781.1 2777124 2778590 D KEGG: pol:Bpro_2917 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase 2777124..2778590 Polaromonas naphthalenivorans CJ2 4689754 YP_982860.1 CDS Pnap_2637 NC_008781.1 2778556 2780832 R PFAM: FMN-binding domain protein; KEGG: sil:SPO1521 regulatory protein, putative; FMN-binding domain-containing protein complement(2778556..2780832) Polaromonas naphthalenivorans CJ2 4689743 YP_982861.1 CDS Pnap_2638 NC_008781.1 2780837 2781871 R PFAM: ApbE family lipoprotein; KEGG: det:DET1595 ApbE/NosX family protein; ApbE family lipoprotein complement(2780837..2781871) Polaromonas naphthalenivorans CJ2 4689727 YP_982862.1 CDS Pnap_2639 NC_008781.1 2782142 2782630 D hypothetical protein 2782142..2782630 Polaromonas naphthalenivorans CJ2 4689740 YP_982863.1 CDS Pnap_2640 NC_008781.1 2782616 2783233 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bja:blr5281 two-component response regulator; two component LuxR family transcriptional regulator complement(2782616..2783233) Polaromonas naphthalenivorans CJ2 4689714 YP_982864.1 CDS Pnap_2641 NC_008781.1 2783244 2784650 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: bja:blr5280 similar to two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2783244..2784650) Polaromonas naphthalenivorans CJ2 4689304 YP_982865.1 CDS Pnap_2642 NC_008781.1 2784733 2785296 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: gox:GOX0713 hypothetical protein; Sel1 domain-containing protein complement(2784733..2785296) Polaromonas naphthalenivorans CJ2 4689684 YP_982866.1 CDS Pnap_2643 NC_008781.1 2785967 2787208 D PFAM: phage integrase family protein; KEGG: tbd:Tbd_0943 putative integrase prophage protein; phage integrase family protein 2785967..2787208 Polaromonas naphthalenivorans CJ2 4689731 YP_982867.1 CDS Pnap_2644 NC_008781.1 2787221 2787424 D PFAM: YcfA family protein; KEGG: gox:GOX2706 hypothetical protein; hypothetical protein 2787221..2787424 Polaromonas naphthalenivorans CJ2 4689675 YP_982868.1 CDS Pnap_2645 NC_008781.1 2787439 2787852 D PFAM: protein of unknown function UPF0150; KEGG: bpa:BPP3142 hypothetical protein; hypothetical protein 2787439..2787852 Polaromonas naphthalenivorans CJ2 4689275 YP_982869.1 CDS Pnap_2646 NC_008781.1 2787960 2788490 D hypothetical protein 2787960..2788490 Polaromonas naphthalenivorans CJ2 4689540 YP_982870.1 CDS Pnap_2647 NC_008781.1 2788573 2788872 D PFAM: Prophage CP4-57 regulatory; KEGG: cvi:CV3853 hypothetical protein; phage transcriptional regulator AlpA 2788573..2788872 Polaromonas naphthalenivorans CJ2 4689225 YP_982871.1 CDS Pnap_2648 NC_008781.1 2788963 2789250 D KEGG: rso:RSc1868 hypothetical protein; hypothetical protein 2788963..2789250 Polaromonas naphthalenivorans CJ2 4689213 YP_982872.1 CDS Pnap_2649 NC_008781.1 2789247 2789873 D hypothetical protein 2789247..2789873 Polaromonas naphthalenivorans CJ2 4689219 YP_982873.1 CDS Pnap_2650 NC_008781.1 2789870 2790214 D hypothetical protein 2789870..2790214 Polaromonas naphthalenivorans CJ2 4689460 YP_982874.1 CDS Pnap_2651 NC_008781.1 2790211 2790573 D hypothetical protein 2790211..2790573 Polaromonas naphthalenivorans CJ2 4689158 YP_982875.1 CDS Pnap_2652 NC_008781.1 2790566 2793007 D KEGG: rfr:Rfer_1359 conserved hypothetical membrane spanning protein; hypothetical protein 2790566..2793007 Polaromonas naphthalenivorans CJ2 4689413 YP_982876.1 CDS Pnap_2653 NC_008781.1 2793004 2793540 D KEGG: rfr:Rfer_1358 hypothetical protein; hypothetical protein 2793004..2793540 Polaromonas naphthalenivorans CJ2 4689026 YP_982877.1 CDS Pnap_2654 NC_008781.1 2793709 2794143 D hypothetical protein 2793709..2794143 Polaromonas naphthalenivorans CJ2 4689409 YP_982878.1 CDS Pnap_2655 NC_008781.1 2794661 2795299 D KEGG: tbd:Tbd_2679 hypothetical protein; hypothetical protein 2794661..2795299 Polaromonas naphthalenivorans CJ2 4689037 YP_982879.1 CDS Pnap_2656 NC_008781.1 2795491 2798238 R KEGG: mfa:Mfla_2628 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(2795491..2798238) Polaromonas naphthalenivorans CJ2 4689044 YP_982880.1 CDS Pnap_2657 NC_008781.1 2798320 2798958 R KEGG: pol:Bpro_1906 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(2798320..2798958) Polaromonas naphthalenivorans CJ2 4689059 YP_982881.1 CDS Pnap_2658 NC_008781.1 2798961 2799779 R KEGG: pol:Bpro_1905 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(2798961..2799779) Polaromonas naphthalenivorans CJ2 4689085 YP_982882.1 CDS Pnap_2659 NC_008781.1 2799890 2800444 D KEGG: pol:Bpro_1904 transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein, LuxR; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 2799890..2800444 Polaromonas naphthalenivorans CJ2 4689079 YP_982883.1 CDS Pnap_2660 NC_008781.1 2800514 2800873 R KEGG: pol:Bpro_1902 ribosomal subunit interface protein, putative; ribosomal subunit Interface protein complement(2800514..2800873) Polaromonas naphthalenivorans CJ2 4689094 YP_982884.1 CDS Pnap_2661 NC_008781.1 2801163 2801540 R PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_1901 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(2801163..2801540) Polaromonas naphthalenivorans CJ2 4689387 YP_982885.1 CDS Pnap_2662 NC_008781.1 2801729 2803189 D PFAM: Catalase domain protein; KEGG: neu:NE1886 catalase; catalase 2801729..2803189 Polaromonas naphthalenivorans CJ2 4689078 YP_982886.1 CDS Pnap_2663 NC_008781.1 2803229 2804236 R PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5382 uncharacterized protein UPF0065; hypothetical protein complement(2803229..2804236) Polaromonas naphthalenivorans CJ2 4689110 YP_982887.1 CDS Pnap_2664 NC_008781.1 2804552 2805994 R PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2844 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2804552..2805994) Polaromonas naphthalenivorans CJ2 4689112 YP_982888.1 CDS Pnap_2665 NC_008781.1 2806029 2807027 R PFAM: protein of unknown function DUF1238; KEGG: mlo:mll5655 hypothetical protein; hypothetical protein complement(2806029..2807027) Polaromonas naphthalenivorans CJ2 4689089 YP_982889.1 CDS Pnap_2666 NC_008781.1 2807062 2808801 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(2807062..2808801) Polaromonas naphthalenivorans CJ2 4689109 YP_982890.1 CDS Pnap_2667 NC_008781.1 2808985 2809947 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0457 transcriptional regulator, LysR family; LysR family transcriptional regulator 2808985..2809947 Polaromonas naphthalenivorans CJ2 4689124 YP_982891.1 CDS Pnap_2668 NC_008781.1 2810081 2810689 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; KEGG: pol:Bpro_1899 uncharacterised peroxidase-related; peroxidase-like protein 2810081..2810689 Polaromonas naphthalenivorans CJ2 4689373 YP_982892.1 CDS Pnap_2669 NC_008781.1 2810727 2811023 D hypothetical protein 2810727..2811023 Polaromonas naphthalenivorans CJ2 4689135 YP_982893.1 CDS Pnap_2670 NC_008781.1 2811241 2813064 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mfa:Mfla_2537 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2811241..2813064 Polaromonas naphthalenivorans CJ2 4689126 YP_982894.1 CDS Pnap_2671 NC_008781.1 2813061 2813783 D PFAM: response regulator receiver; KEGG: plt:Plut_1025 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2813061..2813783 Polaromonas naphthalenivorans CJ2 4689111 YP_982895.1 CDS Pnap_2672 NC_008781.1 2813820 2815052 R PFAM: beta-ketoacyl synthase; KEGG: dar:Daro_4170 beta-ketoacyl synthase; beta-ketoacyl synthase complement(2813820..2815052) Polaromonas naphthalenivorans CJ2 4689954 YP_982896.1 CDS Pnap_2673 NC_008781.1 2815049 2815357 R PFAM: phosphopantetheine-binding; KEGG: sil:SPO1931 acyl carrier protein, putative; phosphopantetheine-binding protein complement(2815049..2815357) Polaromonas naphthalenivorans CJ2 4689842 YP_982897.1 CDS Pnap_2674 NC_008781.1 2815354 2816685 R PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pmt:PMT0413 NAD binding site; FAD dependent oxidoreductase complement(2815354..2816685) Polaromonas naphthalenivorans CJ2 4689875 YP_982898.1 CDS Pnap_2675 NC_008781.1 2816682 2817443 R KEGG: cch:Cag_0252 hypothetical protein; hypothetical protein complement(2816682..2817443) Polaromonas naphthalenivorans CJ2 4689948 YP_982899.1 CDS Pnap_2676 NC_008781.1 2817440 2818504 R PFAM: chalcone and stilbene synthases domain protein; Chalcone and stilbene synthases domain protein; FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: sru:SRU_1395 chalcone synthase, putative; chalcone/stilbene synthase domain-containing protein complement(2817440..2818504) Polaromonas naphthalenivorans CJ2 4689792 YP_982900.1 CDS Pnap_2677 NC_008781.1 2818707 2819129 R PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_1898 thioesterase superfamily; thioesterase superfamily protein complement(2818707..2819129) Polaromonas naphthalenivorans CJ2 4689899 YP_982901.1 CDS Pnap_2678 NC_008781.1 2819161 2820126 R KEGG: pol:Bpro_1897 protein of unknown function DUF6, transmembrane; hypothetical protein complement(2819161..2820126) Polaromonas naphthalenivorans CJ2 4689805 YP_982902.1 CDS Pnap_2679 NC_008781.1 2820297 2821982 D PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pol:Bpro_1895 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 2820297..2821982 Polaromonas naphthalenivorans CJ2 4689956 YP_982903.1 CDS Pnap_2680 NC_008781.1 2822147 2823571 R PFAM: sugar transferase; KEGG: pol:Bpro_1875 sugar transferase; sugar transferase complement(2822147..2823571) Polaromonas naphthalenivorans CJ2 4689886 YP_982904.1 CDS Pnap_2681 NC_008781.1 2823564 2824352 R PFAM: regulatory protein, LuxR; KEGG: pol:Bpro_1874 transcriptional regulator, LuxR family; response regulator receiver protein complement(2823564..2824352) Polaromonas naphthalenivorans CJ2 4689188 YP_982905.1 CDS Pnap_2682 NC_008781.1 2824582 2825103 D hypothetical protein 2824582..2825103 Polaromonas naphthalenivorans CJ2 4689876 YP_982906.1 CDS Pnap_2683 NC_008781.1 2825394 2826548 D TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: pol:Bpro_1868 glycine cleavage system T protein; glycine cleavage system T protein 2825394..2826548 Polaromonas naphthalenivorans CJ2 4689848 YP_982907.1 CDS Pnap_2684 NC_008781.1 2826596 2826967 D TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: pol:Bpro_1867 glycine cleavage system H protein; glycine cleavage system H protein 2826596..2826967 Polaromonas naphthalenivorans CJ2 4690021 YP_982908.1 CDS Pnap_2685 NC_008781.1 2826983 2829877 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 2826983..2829877 Polaromonas naphthalenivorans CJ2 4689913 YP_982909.1 CDS Pnap_2686 NC_008781.1 2830005 2830406 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_1864 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2830005..2830406 Polaromonas naphthalenivorans CJ2 4689847 YP_982910.1 CDS Pnap_2687 NC_008781.1 2830433 2831308 R PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1863 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2830433..2831308) Polaromonas naphthalenivorans CJ2 4689873 YP_982911.1 CDS Pnap_2688 NC_008781.1 2831381 2833150 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_4855 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase complement(2831381..2833150) Polaromonas naphthalenivorans CJ2 4689980 YP_982912.1 CDS Pnap_2689 NC_008781.1 2833150 2833824 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: corR; DNA-binding response regulator CorR; two component LuxR family transcriptional regulator complement(2833150..2833824) Polaromonas naphthalenivorans CJ2 4689967 YP_982913.1 CDS Pnap_2690 NC_008781.1 2833808 2835136 R KEGG: mbo:Mb1015 possible conserved exported protein; secreted hydrolase-like protein complement(2833808..2835136) Polaromonas naphthalenivorans CJ2 4689932 YP_982914.1 CDS Pnap_2691 NC_008781.1 2835215 2835682 R KEGG: cps:CPS_4930 cytochrome c family protein; cytochrome c family protein complement(2835215..2835682) Polaromonas naphthalenivorans CJ2 4689925 YP_982915.1 CDS Pnap_2692 NC_008781.1 2835692 2836918 R PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: reu:Reut_A3083 twin-arginine translocation pathway signal; molybdopterin-binding oxidoreductase complement(2835692..2836918) Polaromonas naphthalenivorans CJ2 4689921 YP_982916.1 CDS Pnap_2693 NC_008781.1 2837186 2838295 D KEGG: syn:slr0708 periplasmic protein, function unknown; hypothetical protein 2837186..2838295 Polaromonas naphthalenivorans CJ2 4689924 YP_982917.1 CDS Pnap_2694 NC_008781.1 2838345 2839193 D PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: bja:blr6160 hypothetical protein; molybdopterin dehydrogenase 2838345..2839193 Polaromonas naphthalenivorans CJ2 4689892 YP_982918.1 CDS Pnap_2695 NC_008781.1 2839190 2841901 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bja:blr6161 putative dehydrogenase; molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase 2839190..2841901 Polaromonas naphthalenivorans CJ2 4689909 YP_982919.1 CDS Pnap_2696 NC_008781.1 2841905 2842894 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:blr3881 hypothetical protein; antibiotic biosynthesis monooxygenase 2841905..2842894 Polaromonas naphthalenivorans CJ2 4689784 YP_982920.1 CDS Pnap_2697 NC_008781.1 2842941 2843963 D PFAM: protein of unknown function DUF182; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0866 protein of unknown function DUF182; hypothetical protein 2842941..2843963 Polaromonas naphthalenivorans CJ2 4689846 YP_982921.1 CDS Pnap_2698 NC_008781.1 2843963 2844487 D KEGG: pol:Bpro_3555 hypothetical protein; hypothetical protein 2843963..2844487 Polaromonas naphthalenivorans CJ2 4689874 YP_982922.1 CDS Pnap_2699 NC_008781.1 2844524 2845408 R PFAM: NUDIX hydrolase; KEGG: bja:bll5330 hypothetical protein; NUDIX hydrolase complement(2844524..2845408) Polaromonas naphthalenivorans CJ2 4689788 YP_982923.1 CDS Pnap_2700 NC_008781.1 2845485 2847065 R PFAM: coenzyme A transferase; KEGG: ecc:c5300 putative acetyl-CoA:acetoacetyl-CoA transferase; coenzyme A transferase complement(2845485..2847065) Polaromonas naphthalenivorans CJ2 4689785 YP_982924.1 CDS Pnap_2701 NC_008781.1 2847380 2848540 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bja:blr3304 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2847380..2848540) Polaromonas naphthalenivorans CJ2 4689810 YP_982925.1 CDS Pnap_2702 NC_008781.1 2848704 2849531 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll3656 hypothetical protein; xylose isomerase domain-containing protein complement(2848704..2849531) Polaromonas naphthalenivorans CJ2 4689839 YP_982926.1 CDS Pnap_2703 NC_008781.1 2849546 2850172 R PFAM: NIPSNAP family containing protein; KEGG: bja:bll3657 hypothetical protein; NIPSNAP family protein complement(2849546..2850172) Polaromonas naphthalenivorans CJ2 4689808 YP_982927.1 CDS Pnap_2704 NC_008781.1 2850228 2851976 R proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase complement(2850228..2851976) Polaromonas naphthalenivorans CJ2 4689811 YP_982928.1 CDS Pnap_2705 NC_008781.1 2852089 2852943 R PFAM: regulatory proteins, IclR; KEGG: bja:blr3665 transcriptional regulatory protein; regulatory proteins, IclR complement(2852089..2852943) Polaromonas naphthalenivorans CJ2 4689807 YP_982929.1 CDS Pnap_2706 NC_008781.1 2853055 2853849 D PFAM: Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: bja:blr3858 putative shikimate 5-dehydrogenase; shikimate dehydrogenase 2853055..2853849 Polaromonas naphthalenivorans CJ2 4689806 YP_982930.1 CDS Pnap_2707 NC_008781.1 2853851 2855593 D proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase 2853851..2855593 Polaromonas naphthalenivorans CJ2 4689796 YP_982931.1 CDS Pnap_2708 NC_008781.1 2855737 2856690 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: rme:Rmet_4017 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2855737..2856690) Polaromonas naphthalenivorans CJ2 4689789 YP_982932.1 CDS Pnap_2709 NC_008781.1 2856788 2857618 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:blr3672 oxidoreductase; short-chain dehydrogenase/reductase SDR 2856788..2857618 Polaromonas naphthalenivorans CJ2 4689039 YP_982933.1 CDS Pnap_2710 NC_008781.1 2857641 2859347 D proposed role in polysaccahride synthesis; putative succinate dehydrogenase 2857641..2859347 Polaromonas naphthalenivorans CJ2 4689028 YP_982934.1 CDS Pnap_2711 NC_008781.1 2859344 2859694 D PFAM: NIPSNAP family containing protein; KEGG: rme:Rmet_5493 NIPSNAP domain protein; NIPSNAP family protein 2859344..2859694 Polaromonas naphthalenivorans CJ2 4689057 YP_982935.1 CDS Pnap_2712 NC_008781.1 2859808 2860668 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mlo:mlr5879 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2859808..2860668 Polaromonas naphthalenivorans CJ2 4689074 YP_982936.1 CDS Pnap_2713 NC_008781.1 2860727 2861578 D PFAM: inner-membrane translocator; KEGG: bpa:BPP2196 putative ABC transport system, membrane protein; inner-membrane translocator 2860727..2861578 Polaromonas naphthalenivorans CJ2 4688989 YP_982937.1 CDS Pnap_2714 NC_008781.1 2861593 2862648 D PFAM: inner-membrane translocator; KEGG: rpd:RPD_0052 inner-membrane translocator; inner-membrane translocator 2861593..2862648 Polaromonas naphthalenivorans CJ2 4688976 YP_982938.1 CDS Pnap_2715 NC_008781.1 2862661 2863380 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr1066 ABC transporter ATP-binding protein; ABC transporter-like protein 2862661..2863380 Polaromonas naphthalenivorans CJ2 4689014 YP_982939.1 CDS Pnap_2716 NC_008781.1 2863377 2864081 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_3678 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 2863377..2864081 Polaromonas naphthalenivorans CJ2 4688980 YP_982940.1 CDS Pnap_2717 NC_008781.1 2864153 2865343 D PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_C6330 twin-arginine translocation pathway signal; extracellular ligand-binding receptor 2864153..2865343 Polaromonas naphthalenivorans CJ2 4688962 YP_982941.1 CDS Pnap_2718 NC_008781.1 2865353 2865766 D PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: sit:TM1040_3469 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 2865353..2865766 Polaromonas naphthalenivorans CJ2 4688966 YP_982942.1 CDS Pnap_2719 NC_008781.1 2865784 2866677 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: bja:blr3666 nucleoside-diphosphate-sugar epimerase; NAD-dependent epimerase/dehydratase 2865784..2866677 Polaromonas naphthalenivorans CJ2 4688955 YP_982943.1 CDS Pnap_2720 NC_008781.1 2866831 2867658 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:blr3672 oxidoreductase; short-chain dehydrogenase/reductase SDR 2866831..2867658 Polaromonas naphthalenivorans CJ2 4688677 YP_982944.1 CDS Pnap_2721 NC_008781.1 2867949 2868296 R SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: hch:HCH_00421 predicted protein tyrosine phosphatase; low molecular weight phosphotyrosine protein phosphatase complement(2867949..2868296) Polaromonas naphthalenivorans CJ2 4688909 YP_982945.1 CDS Pnap_2722 NC_008781.1 2868502 2868906 R hypothetical protein complement(2868502..2868906) Polaromonas naphthalenivorans CJ2 4688913 YP_982946.1 CDS Pnap_2723 NC_008781.1 2869303 2870148 D PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_B1481 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2869303..2870148 Polaromonas naphthalenivorans CJ2 4688674 YP_982947.1 CDS Pnap_2724 NC_008781.1 2870260 2871228 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0281 ferredoxin; ferredoxin complement(2870260..2871228) Polaromonas naphthalenivorans CJ2 4688346 YP_982948.1 CDS Pnap_2725 NC_008781.1 2871239 2872303 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_0280 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein complement(2871239..2872303) Polaromonas naphthalenivorans CJ2 4688645 YP_982949.1 CDS Pnap_2726 NC_008781.1 2872348 2873055 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3380 ABC transporter related; ABC transporter-like protein complement(2872348..2873055) Polaromonas naphthalenivorans CJ2 4688356 YP_982950.1 CDS Pnap_2727 NC_008781.1 2873048 2873839 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3381 ABC transporter related; ABC transporter-like protein complement(2873048..2873839) Polaromonas naphthalenivorans CJ2 4688361 YP_982951.1 CDS Pnap_2728 NC_008781.1 2873836 2874804 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_3382 inner-membrane translocator; inner-membrane translocator complement(2873836..2874804) Polaromonas naphthalenivorans CJ2 4688392 YP_982952.1 CDS Pnap_2729 NC_008781.1 2874806 2875678 R PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0289 inner-membrane translocator; inner-membrane translocator complement(2874806..2875678) Polaromonas naphthalenivorans CJ2 4688374 YP_982953.1 CDS Pnap_2730 NC_008781.1 2875700 2876872 R PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0288 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(2875700..2876872) Polaromonas naphthalenivorans CJ2 4688368 YP_982954.1 CDS Pnap_2731 NC_008781.1 2876938 2877723 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_3386 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2876938..2877723) Polaromonas naphthalenivorans CJ2 4688388 YP_982955.1 CDS Pnap_2732 NC_008781.1 2878069 2878350 D KEGG: rfr:Rfer_1808 hypothetical protein; hypothetical protein 2878069..2878350 Polaromonas naphthalenivorans CJ2 4688397 YP_982956.1 CDS Pnap_2733 NC_008781.1 2878437 2879285 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta complement(2878437..2879285) Polaromonas naphthalenivorans CJ2 4689284 YP_982957.1 CDS Pnap_2734 NC_008781.1 2879315 2879680 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha complement(2879315..2879680) Polaromonas naphthalenivorans CJ2 4688427 YP_982958.1 CDS Pnap_2735 NC_008781.1 2879773 2880690 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0296 transcriptional regulator, LysR family; LysR family transcriptional regulator 2879773..2880690 Polaromonas naphthalenivorans CJ2 4688434 YP_982959.1 CDS Pnap_2736 NC_008781.1 2881012 2881785 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_4070 ferredoxin--NADP(+) reductase; ferredoxin--NADP(+) reductase 2881012..2881785 Polaromonas naphthalenivorans CJ2 4688426 YP_982960.1 CDS Pnap_2737 NC_008781.1 2881969 2882757 R KEGG: rso:RS03699 hypothetical protein; hypothetical protein complement(2881969..2882757) Polaromonas naphthalenivorans CJ2 4688442 YP_982961.1 CDS Pnap_2738 NC_008781.1 2882777 2883850 R KEGG: bcn:Bcen_1168 hypothetical protein; hypothetical protein complement(2882777..2883850) Polaromonas naphthalenivorans CJ2 4688430 YP_982962.1 CDS Pnap_2739 NC_008781.1 2883968 2885317 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_01435 signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2883968..2885317) Polaromonas naphthalenivorans CJ2 4688452 YP_982963.1 CDS Pnap_2740 NC_008781.1 2885314 2886009 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_01436 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two component transcriptional regulator complement(2885314..2886009) Polaromonas naphthalenivorans CJ2 4688472 YP_982964.1 CDS Pnap_2741 NC_008781.1 2886108 2886578 R hypothetical protein complement(2886108..2886578) Polaromonas naphthalenivorans CJ2 4688471 YP_982965.1 CDS Pnap_2742 NC_008781.1 2886787 2887191 R PFAM: Class I peptide chain release factor; KEGG: pol:Bpro_1858 class I peptide chain release factor; peptidyl-tRNA hydrolase domain-containing protein complement(2886787..2887191) Polaromonas naphthalenivorans CJ2 4688480 YP_982966.1 CDS Pnap_2743 NC_008781.1 2887270 2887953 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_4494 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase 2887270..2887953 Polaromonas naphthalenivorans CJ2 4688478 YP_982967.1 CDS Pnap_2744 NC_008781.1 2888079 2889083 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bpa:BPP2663 short chain dehydrogenase; short chain dehydrogenase complement(2888079..2889083) Polaromonas naphthalenivorans CJ2 4688489 YP_982968.1 CDS Pnap_2745 NC_008781.1 2889188 2890285 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2889188..2890285) Polaromonas naphthalenivorans CJ2 4688496 YP_982969.1 CDS Pnap_2746 NC_008781.1 2890549 2891454 D PFAM: Helix-turn-helix, type 11 domain protein; KEGG: pcr:Pcryo_0924 transcriptional regulator-like; helix-turn-helix, type 11 domain-containing protein 2890549..2891454 Polaromonas naphthalenivorans CJ2 4688737 YP_982970.1 CDS Pnap_2747 NC_008781.1 2891628 2891936 D PFAM: protein of unknown function UPF0153; KEGG: hpj:jhp0701 hypothetical protein; hypothetical protein 2891628..2891936 Polaromonas naphthalenivorans CJ2 4688377 YP_982971.1 CDS Pnap_2748 NC_008781.1 2891992 2892852 D KEGG: aci:ACIAD1443 hypothetical protein; hypothetical protein 2891992..2892852 Polaromonas naphthalenivorans CJ2 4688711 YP_982972.1 CDS Pnap_2749 NC_008781.1 2892985 2893512 D hypothetical protein 2892985..2893512 Polaromonas naphthalenivorans CJ2 4688386 YP_982973.1 CDS Pnap_2750 NC_008781.1 2893505 2895325 D KEGG: aci:ACIAD1444 hypothetical protein; hypothetical protein 2893505..2895325 Polaromonas naphthalenivorans CJ2 4688393 YP_982974.1 CDS Pnap_2751 NC_008781.1 2895322 2896971 D PFAM: GTP-binding protein, HSR1-related; KEGG: ilo:IL0535 protein containing N-terminal predicted GTPase domain; HSR1-like GTP-binding protein 2895322..2896971 Polaromonas naphthalenivorans CJ2 4688488 YP_982975.1 CDS Pnap_2752 NC_008781.1 2897176 2898150 D KEGG: mca:MCA0729 hypothetical protein; hypothetical protein 2897176..2898150 Polaromonas naphthalenivorans CJ2 4688484 YP_982976.1 CDS Pnap_2753 NC_008781.1 2898212 2898601 D KEGG: rpe:RPE_2166 hypothetical protein; hypothetical protein 2898212..2898601 Polaromonas naphthalenivorans CJ2 4688696 YP_982977.1 CDS Pnap_2754 NC_008781.1 2898696 2899121 D PFAM: Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_1841 cupin 2, conserved barrel; cupin 2898696..2899121 Polaromonas naphthalenivorans CJ2 4688395 YP_982978.1 CDS Pnap_2755 NC_008781.1 2899137 2899793 R KEGG: pol:Bpro_1840 glutathione S-transferase-like; glutathione S-transferase-like protein complement(2899137..2899793) Polaromonas naphthalenivorans CJ2 4688406 YP_982979.1 CDS Pnap_2756 NC_008781.1 2899971 2901200 D TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_1839 intracellular polyhydroxyalkanoate depolymerase; polyhydroxyalkanoate depolymerase 2899971..2901200 Polaromonas naphthalenivorans CJ2 4688444 YP_982980.1 CDS Pnap_2757 NC_008781.1 2901240 2901695 R PFAM: CBS domain containing protein; KEGG: pol:Bpro_1837 CBS domain; hypothetical protein complement(2901240..2901695) Polaromonas naphthalenivorans CJ2 4688514 YP_982981.1 CDS Pnap_2758 NC_008781.1 2901877 2903232 D catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 2901877..2903232 Polaromonas naphthalenivorans CJ2 4688466 YP_982982.1 CDS Pnap_2759 NC_008781.1 2903232 2904050 D PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_3159 alpha/beta hydrolase; alpha/beta hydrolase fold protein 2903232..2904050 Polaromonas naphthalenivorans CJ2 4688500 YP_982983.1 CDS Pnap_2760 NC_008781.1 2904096 2905004 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bpa:BPP2885 probable LysR-family transcriptional regulator; LysR family transcriptional regulator complement(2904096..2905004) Polaromonas naphthalenivorans CJ2 4688422 YP_982984.1 CDS Pnap_2761 NC_008781.1 2905126 2906502 D PFAM: protein of unknown function DUF1446; KEGG: bbr:BB3206 hypothetical protein; hypothetical protein 2905126..2906502 Polaromonas naphthalenivorans CJ2 4688300 YP_982985.1 CDS Pnap_2762 NC_008781.1 2906499 2906864 D KEGG: bbr:BB3205 hypothetical protein; hypothetical protein 2906499..2906864 Polaromonas naphthalenivorans CJ2 4687924 YP_982986.1 CDS Pnap_2763 NC_008781.1 2906898 2907866 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5882 uncharacterized protein UPF0065; hypothetical protein 2906898..2907866 Polaromonas naphthalenivorans CJ2 4687921 YP_982987.1 CDS Pnap_2764 NC_008781.1 2907905 2909140 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB complement(2907905..2909140) Polaromonas naphthalenivorans CJ2 4688253 YP_982988.1 CDS Pnap_2765 NC_008781.1 2909418 2910275 R PFAM: Silent information regulator protein Sir2; KEGG: dar:Daro_0006 silent information regulator protein Sir2; silent information regulator protein Sir2 complement(2909418..2910275) Polaromonas naphthalenivorans CJ2 4688243 YP_982989.1 CDS Pnap_2766 NC_008781.1 2910333 2910626 R KEGG: rso:RSc0133 hypothetical protein; hypothetical protein complement(2910333..2910626) Polaromonas naphthalenivorans CJ2 4688252 YP_982990.1 CDS Pnap_2767 NC_008781.1 2910657 2912042 R PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: pol:Bpro_1506 FAD linked oxidase-like; FAD linked oxidase domain-containing protein complement(2910657..2912042) Polaromonas naphthalenivorans CJ2 4687915 YP_982991.1 CDS Pnap_2768 NC_008781.1 2912202 2912594 R KEGG: pol:Bpro_1834 hypothetical protein; hypothetical protein complement(2912202..2912594) Polaromonas naphthalenivorans CJ2 4687906 YP_982992.1 CDS Pnap_2769 NC_008781.1 2912679 2913893 R TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_1830 ribonuclease BN, putative; putative ribonuclease BN complement(2912679..2913893) Polaromonas naphthalenivorans CJ2 4687887 YP_982993.1 CDS Pnap_2770 NC_008781.1 2913914 2914306 D KEGG: pol:Bpro_1829 membrane protein-like; membrane protein 2913914..2914306 Polaromonas naphthalenivorans CJ2 4687870 YP_982994.1 CDS Pnap_2771 NC_008781.1 2914303 2915811 D PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_1828 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 2914303..2915811 Polaromonas naphthalenivorans CJ2 4687884 YP_982995.1 CDS thyA NC_008781.1 2915860 2916690 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 2915860..2916690 Polaromonas naphthalenivorans CJ2 4687842 YP_982996.1 CDS Pnap_2773 NC_008781.1 2916690 2917190 D PFAM: dihydrofolate reductase region; KEGG: pol:Bpro_1822 dihydrofolate reductase; dihydrofolate reductase 2916690..2917190 Polaromonas naphthalenivorans CJ2 4687860 YP_982997.1 CDS Pnap_2774 NC_008781.1 2917187 2918221 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO0471 hypothetical dioxygenase; 2-nitropropane dioxygenase 2917187..2918221 Polaromonas naphthalenivorans CJ2 4687867 YP_982998.1 CDS Pnap_2775 NC_008781.1 2918347 2918928 D KEGG: pol:Bpro_1821 putative transmembrane protein; hypothetical protein 2918347..2918928 Polaromonas naphthalenivorans CJ2 4687835 YP_982999.1 CDS Pnap_2776 NC_008781.1 2918973 2919755 D KEGG: pol:Bpro_1820 exodeoxyribonuclease III (xth); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 2918973..2919755 Polaromonas naphthalenivorans CJ2 4687832 YP_983000.1 CDS Pnap_2777 NC_008781.1 2919802 2921352 R KEGG: pol:Bpro_1810 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC complement(2919802..2921352) Polaromonas naphthalenivorans CJ2 4687830 YP_983001.1 CDS Pnap_2778 NC_008781.1 2921411 2922508 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1809 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase NtrB complement(2921411..2922508) Polaromonas naphthalenivorans CJ2 4687792 YP_983002.1 CDS Pnap_2779 NC_008781.1 2922531 2923049 R KEGG: pol:Bpro_1808 conserved hypothetical signal peptide protein; putative signal peptide protein complement(2922531..2923049) Polaromonas naphthalenivorans CJ2 4687793 YP_983003.1 CDS Pnap_2780 NC_008781.1 2923247 2924662 R KEGG: pol:Bpro_1807 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; glutamine synthetase complement(2923247..2924662) Polaromonas naphthalenivorans CJ2 4687597 YP_983004.1 CDS Pnap_2781 NC_008781.1 2924892 2925800 R PFAM: molybdopterin binding domain; KEGG: pol:Bpro_1806 molybdopterin binding domain; molybdopterin-binding domain-containing protein complement(2924892..2925800) Polaromonas naphthalenivorans CJ2 4687763 YP_983005.1 CDS Pnap_2782 NC_008781.1 2925818 2926726 R KEGG: pol:Bpro_1805 putative transmembrane protein; hypothetical protein complement(2925818..2926726) Polaromonas naphthalenivorans CJ2 4687217 YP_983006.1 CDS Pnap_2783 NC_008781.1 2926734 2927699 R KEGG: pol:Bpro_1804 hypothetical protein; hypothetical protein complement(2926734..2927699) Polaromonas naphthalenivorans CJ2 4687618 YP_983007.1 CDS Pnap_2784 NC_008781.1 2927705 2928586 R PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1803 polysaccharide deacetylase; polysaccharide deacetylase complement(2927705..2928586) Polaromonas naphthalenivorans CJ2 4687614 YP_983008.1 CDS Pnap_2785 NC_008781.1 2928552 2929577 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1802 hypothetical protein; hypothetical protein complement(2928552..2929577) Polaromonas naphthalenivorans CJ2 4687606 YP_983009.1 CDS Pnap_2786 NC_008781.1 2929717 2930451 R PFAM: pseudouridine synthase; KEGG: pol:Bpro_1800 pseudouridine synthase, Rsu; pseudouridine synthase complement(2929717..2930451) Polaromonas naphthalenivorans CJ2 4687633 YP_983010.1 CDS Pnap_2787 NC_008781.1 2930913 2931578 R KEGG: pol:Bpro_1798 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase complement(2930913..2931578) Polaromonas naphthalenivorans CJ2 4689897 YP_983011.1 CDS Pnap_2788 NC_008781.1 2931624 2932340 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(2931624..2932340) Polaromonas naphthalenivorans CJ2 4687621 YP_983012.1 CDS Pnap_2789 NC_008781.1 2932409 2933041 R PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1796 OmpA/MotB; OmpA/MotB domain-containing protein complement(2932409..2933041) Polaromonas naphthalenivorans CJ2 4687637 YP_983013.1 CDS Pnap_2790 NC_008781.1 2933298 2935967 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2933298..2935967 Polaromonas naphthalenivorans CJ2 4687620 YP_983014.1 CDS Pnap_2791 NC_008781.1 2935964 2936536 D KEGG: pol:Bpro_1794 hypothetical protein; hypothetical protein 2935964..2936536 Polaromonas naphthalenivorans CJ2 4687643 YP_983015.1 CDS Pnap_2792 NC_008781.1 2936533 2937639 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2936533..2937639 Polaromonas naphthalenivorans CJ2 4687670 YP_983016.1 CDS Pnap_2793 NC_008781.1 2937641 2938723 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pol:Bpro_1792 chorismate mutase; chorismate mutase 2937641..2938723 Polaromonas naphthalenivorans CJ2 4687700 YP_983017.1 CDS Pnap_2794 NC_008781.1 2938786 2939664 D PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pol:Bpro_1791 prephenate dehydrogenase; prephenate dehydrogenase 2938786..2939664 Polaromonas naphthalenivorans CJ2 4688396 YP_983018.1 CDS Pnap_2795 NC_008781.1 2939676 2941679 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase 2939676..2941679 Polaromonas naphthalenivorans CJ2 4687699 YP_983019.1 CDS rpsA NC_008781.1 2941847 2943532 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2941847..2943532 Polaromonas naphthalenivorans CJ2 4687706 YP_983020.1 CDS Pnap_2797 NC_008781.1 2943607 2943921 D TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_1788 integration host factor, beta subunit; integration host factor subunit beta 2943607..2943921 Polaromonas naphthalenivorans CJ2 4687701 YP_983021.1 CDS Pnap_2798 NC_008781.1 2943982 2944269 D KEGG: pol:Bpro_1787 hypothetical protein; hypothetical protein 2943982..2944269 Polaromonas naphthalenivorans CJ2 4687718 YP_983022.1 CDS Pnap_2799 NC_008781.1 2944259 2945404 D SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1786 tetratricopeptide region; hypothetical protein 2944259..2945404 Polaromonas naphthalenivorans CJ2 4688517 YP_983023.1 CDS Pnap_2800 NC_008781.1 2945424 2946371 D TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: pol:Bpro_1785 RfaE bifunctional protein, domain I; bifunctional protein RfaE 2945424..2946371 Polaromonas naphthalenivorans CJ2 4687641 YP_983024.1 CDS Pnap_2801 NC_008781.1 2946405 2947412 D TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: pol:Bpro_1784 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 2946405..2947412 Polaromonas naphthalenivorans CJ2 4688421 YP_983025.1 CDS Pnap_2802 NC_008781.1 2947555 2947914 D KEGG: pol:Bpro_1783 hypothetical protein; hypothetical protein 2947555..2947914 Polaromonas naphthalenivorans CJ2 4688362 YP_983026.1 CDS fabG NC_008781.1 2947986 2948723 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2947986..2948723) Polaromonas naphthalenivorans CJ2 4687635 YP_983027.1 CDS Pnap_2804 NC_008781.1 2948838 2950016 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(2948838..2950016) Polaromonas naphthalenivorans CJ2 4687599 YP_983028.1 CDS Pnap_2805 NC_008781.1 2950129 2951892 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pol:Bpro_2139 poly(R)-hydroxyalkanoic acid synthase, class I; poly(R)-hydroxyalkanoic acid synthase complement(2950129..2951892) Polaromonas naphthalenivorans CJ2 4687673 YP_983029.1 CDS Pnap_2806 NC_008781.1 2952242 2953072 R PFAM: protein of unknown function DUF152; KEGG: pol:Bpro_2137 protein of unknown function DUF152; hypothetical protein complement(2952242..2953072) Polaromonas naphthalenivorans CJ2 4687571 YP_983030.1 CDS Pnap_2807 NC_008781.1 2953075 2953725 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2136 maleylacetoacetate isomerase; maleylacetoacetate isomerase complement(2953075..2953725) Polaromonas naphthalenivorans CJ2 4687567 YP_983031.1 CDS Pnap_2808 NC_008781.1 2953780 2954397 R KEGG: noc:Noc_0134 hypothetical protein; hypothetical protein complement(2953780..2954397) Polaromonas naphthalenivorans CJ2 4687552 YP_983032.1 CDS Pnap_2809 NC_008781.1 2954452 2955315 R hypothetical protein complement(2954452..2955315) Polaromonas naphthalenivorans CJ2 4687539 YP_983033.1 CDS Pnap_2810 NC_008781.1 2955312 2955869 R hypothetical protein complement(2955312..2955869) Polaromonas naphthalenivorans CJ2 4687551 YP_983034.1 CDS Pnap_2811 NC_008781.1 2955913 2956662 R KEGG: noc:Noc_1486 ABC-type phosphate/phosphonate transport system periplasmic component; phosphate/phosphonate ABC transporter periplasmic protein complement(2955913..2956662) Polaromonas naphthalenivorans CJ2 4687375 YP_983035.1 CDS Pnap_2812 NC_008781.1 2956659 2957159 R KEGG: noc:Noc_1487 PAS domain protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein complement(2956659..2957159) Polaromonas naphthalenivorans CJ2 4687650 YP_983036.1 CDS Pnap_2813 NC_008781.1 2957170 2957532 R PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 Roadblock/LC7; roadblock/LC7 family protein complement(2957170..2957532) Polaromonas naphthalenivorans CJ2 4687431 YP_983037.1 CDS Pnap_2814 NC_008781.1 2957772 2958074 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pol:Bpro_2130 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 2957772..2958074 Polaromonas naphthalenivorans CJ2 4686854 YP_983038.1 CDS Pnap_2815 NC_008781.1 2958159 2959199 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2127 uncharacterized protein UPF0065; hypothetical protein 2958159..2959199 Polaromonas naphthalenivorans CJ2 4686848 YP_983039.1 CDS Pnap_2816 NC_008781.1 2959237 2959932 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_2124 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 2959237..2959932 Polaromonas naphthalenivorans CJ2 4686858 YP_983040.1 CDS Pnap_2817 NC_008781.1 2960064 2960669 D PFAM: NUDIX hydrolase; KEGG: pol:Bpro_2117 NUDIX hydrolase; NUDIX hydrolase 2960064..2960669 Polaromonas naphthalenivorans CJ2 4686862 YP_983041.1 CDS rdgC NC_008781.1 2960751 2961806 D Required for efficient pilin antigenic variation; recombination associated protein 2960751..2961806 Polaromonas naphthalenivorans CJ2 4686852 YP_983042.1 CDS Pnap_2819 NC_008781.1 2961933 2962265 D KEGG: pol:Bpro_3013 hypothetical protein; hypothetical protein 2961933..2962265 Polaromonas naphthalenivorans CJ2 4686837 YP_983043.1 CDS Pnap_2820 NC_008781.1 2962333 2963691 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0682 helix-turn-helix, fis-type; sigma-54 dependent trancsriptional regulator complement(2962333..2963691) Polaromonas naphthalenivorans CJ2 4686865 YP_983044.1 CDS Pnap_2821 NC_008781.1 2964057 2964704 D PFAM: beta-lactamase domain protein; KEGG: mfa:Mfla_1733 beta-lactamase-like protein; beta-lactamase domain-containing protein 2964057..2964704 Polaromonas naphthalenivorans CJ2 4686871 YP_983045.1 CDS Pnap_2822 NC_008781.1 2964742 2966166 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_1934 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 2964742..2966166 Polaromonas naphthalenivorans CJ2 4686878 YP_983046.1 CDS Pnap_2823 NC_008781.1 2966499 2967395 D KEGG: rpc:RPC_1203 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like; dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein 2966499..2967395 Polaromonas naphthalenivorans CJ2 4686841 YP_983047.1 CDS Pnap_2824 NC_008781.1 2967509 2968369 D PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_B0675 putative metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 2967509..2968369 Polaromonas naphthalenivorans CJ2 4686890 YP_983048.1 CDS Pnap_2825 NC_008781.1 2968451 2969440 R PFAM: cytochrome c, class I; KEGG: bmb:BruAb2_0829 cytochrome c family protein; class I cytochrome c complement(2968451..2969440) Polaromonas naphthalenivorans CJ2 4686880 YP_983049.1 CDS Pnap_2826 NC_008781.1 2969564 2969902 R PFAM: regulatory protein, ArsR; KEGG: tel:tll0769 transcriptional regulator; regulatory protein ArsR complement(2969564..2969902) Polaromonas naphthalenivorans CJ2 4686902 YP_983050.1 CDS Pnap_2827 NC_008781.1 2970068 2971126 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bte:BTH_II0059 efflux transporter, RND family, MFP subunit, putative; RND family efflux transporter MFP subunit 2970068..2971126 Polaromonas naphthalenivorans CJ2 4686882 YP_983051.1 CDS Pnap_2828 NC_008781.1 2971128 2974367 D PFAM: acriflavin resistance protein; KEGG: bte:BTH_II0058 transporter, AcrB/D/F family; acriflavin resistance protein 2971128..2974367 Polaromonas naphthalenivorans CJ2 4687353 YP_983052.1 CDS Pnap_2829 NC_008781.1 2974371 2974580 D KEGG: bte:BTH_II0057 hypothetical protein; hypothetical protein 2974371..2974580 Polaromonas naphthalenivorans CJ2 4686915 YP_983053.1 CDS Pnap_2830 NC_008781.1 2974594 2975961 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bte:BTH_II0056 probable porin (omp) abc transporter protein; TolC family type I secretion outer membrane protein 2974594..2975961 Polaromonas naphthalenivorans CJ2 4686921 YP_983054.1 CDS Pnap_2831 NC_008781.1 2975999 2977270 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_3759 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2975999..2977270 Polaromonas naphthalenivorans CJ2 4686930 YP_983055.1 CDS Pnap_2832 NC_008781.1 2977310 2977639 D PFAM: Rhodanese domain protein; KEGG: vfi:VFA0125 rhodanese-related sulfurtransferase; rhodanese domain-containing protein 2977310..2977639 Polaromonas naphthalenivorans CJ2 4686908 YP_983056.1 CDS Pnap_2833 NC_008781.1 2977659 2978135 D PFAM: OsmC family protein; KEGG: bur:Bcep18194_B1521 hypothetical protein; OsmC family protein 2977659..2978135 Polaromonas naphthalenivorans CJ2 4686955 YP_983057.1 CDS Pnap_2834 NC_008781.1 2978132 2978512 D PFAM: Rhodanese domain protein; KEGG: noc:Noc_2007 metallo-beta-lactamase family protein; rhodanese domain-containing protein 2978132..2978512 Polaromonas naphthalenivorans CJ2 4686948 YP_983058.1 CDS Pnap_2835 NC_008781.1 2978727 2979464 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3625 ABC transporter related; ABC transporter-like protein complement(2978727..2979464) Polaromonas naphthalenivorans CJ2 4686904 YP_983059.1 CDS Pnap_2836 NC_008781.1 2979461 2980654 R PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3624 protein of unknown function DUF214; hypothetical protein complement(2979461..2980654) Polaromonas naphthalenivorans CJ2 4686947 YP_983060.1 CDS Pnap_2837 NC_008781.1 2980651 2981871 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3623 secretion protein HlyD; RND family efflux transporter MFP subunit complement(2980651..2981871) Polaromonas naphthalenivorans CJ2 4686935 YP_983061.1 CDS Pnap_2838 NC_008781.1 2981868 2982428 R KEGG: rfr:Rfer_3622 transcriptional regulator, TetR family; hypothetical protein complement(2981868..2982428) Polaromonas naphthalenivorans CJ2 4686956 YP_983062.1 CDS Pnap_2839 NC_008781.1 2982442 2983362 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_3644 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(2982442..2983362) Polaromonas naphthalenivorans CJ2 4686929 YP_983063.1 CDS Pnap_2840 NC_008781.1 2983540 2983959 R hypothetical protein complement(2983540..2983959) Polaromonas naphthalenivorans CJ2 4686977 YP_983064.1 CDS Pnap_2842 NC_008781.1 2984212 2985534 R KEGG: eba:ebA6677 hypothetical protein; hypothetical protein complement(2984212..2985534) Polaromonas naphthalenivorans CJ2 4689968 YP_983065.1 CDS Pnap_2843 NC_008781.1 2985977 2986216 R PFAM: glutaredoxin; KEGG: rfr:Rfer_3642 thiol-disulfide isomerase and thioredoxins; glutaredoxin complement(2985977..2986216) Polaromonas naphthalenivorans CJ2 4686970 YP_983066.1 CDS Pnap_2844 NC_008781.1 2986274 2987320 R PFAM: permease; KEGG: rfr:Rfer_3641 permease; permease complement(2986274..2987320) Polaromonas naphthalenivorans CJ2 4686965 YP_983067.1 CDS Pnap_2845 NC_008781.1 2987489 2988013 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_3639 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor complement(2987489..2988013) Polaromonas naphthalenivorans CJ2 4686974 YP_983068.1 CDS Pnap_2846 NC_008781.1 2988235 2988486 D KEGG: mma:MM2981 type I restriction-modification system specificity subunit; hypothetical protein 2988235..2988486 Polaromonas naphthalenivorans CJ2 4686952 YP_983069.1 CDS Pnap_2847 NC_008781.1 2988838 2989326 R PFAM: regulatory protein, MerR; KEGG: pol:Bpro_2109 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2988838..2989326) Polaromonas naphthalenivorans CJ2 4690040 YP_983070.1 CDS ihfA NC_008781.1 2989392 2989763 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(2989392..2989763) Polaromonas naphthalenivorans CJ2 4687063 YP_983071.1 CDS pheT NC_008781.1 2989814 2992240 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2989814..2992240) Polaromonas naphthalenivorans CJ2 4687058 YP_983072.1 CDS pheS NC_008781.1 2992275 2993339 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2992275..2993339) Polaromonas naphthalenivorans CJ2 4687308 YP_983073.1 CDS rplT NC_008781.1 2993513 2993872 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2993513..2993872) Polaromonas naphthalenivorans CJ2 4687077 YP_983074.1 CDS rpmI NC_008781.1 2993897 2994100 R PFAM: ribosomal protein L35; KEGG: pol:Bpro_2104 ribosomal protein L35; 50S ribosomal protein L35 complement(2993897..2994100) Polaromonas naphthalenivorans CJ2 4687592 YP_983075.1 CDS Pnap_2853 NC_008781.1 2994336 2994860 R TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: pol:Bpro_2103 translation initiation factor IF-3; translation initiation factor IF-3 complement(2994336..2994860) Polaromonas naphthalenivorans CJ2 4687067 YP_983076.1 CDS thrS NC_008781.1 2995021 2996928 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(2995021..2996928) Polaromonas naphthalenivorans CJ2 4687071 YP_983077.1 CDS Pnap_2855 NC_008781.1 2997030 2998349 R TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: pol:Bpro_2101 isocitrate lyase; isocitrate lyase complement(2997030..2998349) Polaromonas naphthalenivorans CJ2 4686923 YP_983078.1 CDS Pnap_2857 NC_008781.1 2998746 2999048 R KEGG: noc:Noc_1587 transposase; hypothetical protein complement(2998746..2999048) Polaromonas naphthalenivorans CJ2 4690184 YP_983079.1 CDS Pnap_2858 NC_008781.1 2999145 3000119 D PFAM: Insertion element protein; KEGG: neu:NE1698 hypothetical protein; insertion element protein 2999145..3000119 Polaromonas naphthalenivorans CJ2 4686903 YP_983080.1 CDS Pnap_2859 NC_008781.1 3000503 3001363 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0355 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3000503..3001363) Polaromonas naphthalenivorans CJ2 4686942 YP_983081.1 CDS Pnap_2860 NC_008781.1 3001374 3002291 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0354 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3001374..3002291) Polaromonas naphthalenivorans CJ2 4686937 YP_983082.1 CDS Pnap_2861 NC_008781.1 3002308 3003408 R KEGG: rfr:Rfer_0353 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(3002308..3003408) Polaromonas naphthalenivorans CJ2 4686946 YP_983083.1 CDS Pnap_2862 NC_008781.1 3003498 3004658 R PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_0352 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(3003498..3004658) Polaromonas naphthalenivorans CJ2 4687075 YP_983084.1 CDS Pnap_2863 NC_008781.1 3004789 3006186 R PFAM: aminotransferase class-III; KEGG: rfr:Rfer_0351 aminotransferase class-III; putative aminotransferase complement(3004789..3006186) Polaromonas naphthalenivorans CJ2 4686875 YP_983085.1 CDS Pnap_2864 NC_008781.1 3006230 3007609 R PFAM: glutamine synthetase, catalytic region; KEGG: rfr:Rfer_0350 glutamate--ammonia ligase; glutamate--ammonia ligase complement(3006230..3007609) Polaromonas naphthalenivorans CJ2 4686815 YP_983086.1 CDS Pnap_2865 NC_008781.1 3007659 3008429 R PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: cvi:CV2023 probable amidophosphoribosyltransferase; peptidase C26 complement(3007659..3008429) Polaromonas naphthalenivorans CJ2 4686788 YP_983087.1 CDS Pnap_2866 NC_008781.1 3008642 3010120 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rfr:Rfer_0348 transcriptional regulator, GntR family; GntR family transcriptional regulator 3008642..3010120 Polaromonas naphthalenivorans CJ2 4686796 YP_983088.1 CDS Pnap_2867 NC_008781.1 3010329 3010832 D PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY3675 hypothetical protein; N-acetyltransferase GCN5 3010329..3010832 Polaromonas naphthalenivorans CJ2 4686799 YP_983089.1 CDS Pnap_2869 NC_008781.1 3011364 3012326 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_2099 protein of unknown function DUF6, transmembrane; hypothetical protein 3011364..3012326 Polaromonas naphthalenivorans CJ2 4690176 YP_983090.1 CDS Pnap_2870 NC_008781.1 3012354 3013874 R catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase complement(3012354..3013874) Polaromonas naphthalenivorans CJ2 4686762 YP_983091.1 CDS Pnap_2871 NC_008781.1 3013912 3014694 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_2093 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(3013912..3014694) Polaromonas naphthalenivorans CJ2 4686746 YP_983092.1 CDS Pnap_2872 NC_008781.1 3014719 3015723 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2092 twin-arginine translocation pathway signal; hypothetical protein complement(3014719..3015723) Polaromonas naphthalenivorans CJ2 4686739 YP_983093.1 CDS Pnap_2873 NC_008781.1 3015771 3017258 R PFAM: Malonyl-CoA decarboxylase; KEGG: pol:Bpro_2091 malonyl-CoA decarboxylase; malonyl-CoA decarboxylase complement(3015771..3017258) Polaromonas naphthalenivorans CJ2 4686741 YP_983094.1 CDS Pnap_2874 NC_008781.1 3017362 3018177 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3017362..3018177) Polaromonas naphthalenivorans CJ2 4686735 YP_983095.1 CDS Pnap_2875 NC_008781.1 3018244 3022029 R KEGG: bxe:Bxe_B1311 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(3018244..3022029) Polaromonas naphthalenivorans CJ2 4686731 YP_983096.1 CDS Pnap_2876 NC_008781.1 3022209 3023141 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2053 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3022209..3023141) Polaromonas naphthalenivorans CJ2 4686734 YP_983097.1 CDS Pnap_2877 NC_008781.1 3023247 3024941 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 3023247..3024941 Polaromonas naphthalenivorans CJ2 4686715 YP_983098.1 CDS Pnap_2878 NC_008781.1 3025051 3025317 R KEGG: pol:Bpro_2051 hypothetical protein; hypothetical protein complement(3025051..3025317) Polaromonas naphthalenivorans CJ2 4686732 YP_983099.1 CDS Pnap_2879 NC_008781.1 3025421 3025741 D PFAM: cytochrome c, class I; KEGG: pol:Bpro_2050 cytochrome c, class I; class I cytochrome c 3025421..3025741 Polaromonas naphthalenivorans CJ2 4686712 YP_983100.1 CDS Pnap_2880 NC_008781.1 3025862 3027856 R TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_2049 acetate--CoA ligase; acetate--CoA ligase complement(3025862..3027856) Polaromonas naphthalenivorans CJ2 4686703 YP_983101.1 CDS Pnap_2881 NC_008781.1 3028015 3028617 D PFAM: Uncharacterized protein UPF0114; KEGG: pol:Bpro_2048 uncharacterized protein UPF0114; hypothetical protein 3028015..3028617 Polaromonas naphthalenivorans CJ2 4686701 YP_983102.1 CDS fumC NC_008781.1 3028690 3030081 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(3028690..3030081) Polaromonas naphthalenivorans CJ2 4686683 YP_983103.1 CDS Pnap_2883 NC_008781.1 3030185 3031735 D TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: pol:Bpro_2046 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 3030185..3031735 Polaromonas naphthalenivorans CJ2 4686690 YP_983104.1 CDS Pnap_2884 NC_008781.1 3031762 3032580 D KEGG: pol:Bpro_2045 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase 3031762..3032580 Polaromonas naphthalenivorans CJ2 4686624 YP_983105.1 CDS Pnap_2885 NC_008781.1 3032674 3034161 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2037 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein complement(3032674..3034161) Polaromonas naphthalenivorans CJ2 4686570 YP_983106.1 CDS Pnap_2886 NC_008781.1 3034154 3037327 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2036 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(3034154..3037327) Polaromonas naphthalenivorans CJ2 4686561 YP_983107.1 CDS Pnap_2887 NC_008781.1 3037340 3038632 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2035 secretion protein HlyD; RND family efflux transporter MFP subunit complement(3037340..3038632) Polaromonas naphthalenivorans CJ2 4686144 YP_983108.1 CDS Pnap_2888 NC_008781.1 3038786 3039481 D PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; KEGG: pol:Bpro_2034 transcriptional regulator, TetR family; TetR family transcriptional regulator 3038786..3039481 Polaromonas naphthalenivorans CJ2 4686493 YP_983109.1 CDS Pnap_2889 NC_008781.1 3039653 3040921 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(3039653..3040921) Polaromonas naphthalenivorans CJ2 4690161 YP_983110.1 CDS Pnap_2890 NC_008781.1 3041066 3042052 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: pol:Bpro_2861 tRNA(Ile)-lysidine synthetase-like; tRNA(Ile)-lysidine synthetase complement(3041066..3042052) Polaromonas naphthalenivorans CJ2 4686114 YP_983111.1 CDS Pnap_2891 NC_008781.1 3042078 3043058 R TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit; KEGG: pol:Bpro_2863 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha complement(3042078..3043058) Polaromonas naphthalenivorans CJ2 4687483 YP_983112.1 CDS Pnap_2892 NC_008781.1 3043121 3043861 R PFAM: HhH-GPD family protein; KEGG: pol:Bpro_2864 HhH-GPD; HhH-GPD family protein complement(3043121..3043861) Polaromonas naphthalenivorans CJ2 4686409 YP_983113.1 CDS cysS NC_008781.1 3043914 3045305 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(3043914..3045305) Polaromonas naphthalenivorans CJ2 4686267 YP_983114.1 CDS Pnap_2894 NC_008781.1 3045614 3046180 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_2866 tetratricopeptide TPR_2; hypothetical protein 3045614..3046180 Polaromonas naphthalenivorans CJ2 4686315 YP_983115.1 CDS Pnap_2895 NC_008781.1 3046215 3046823 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pol:Bpro_2867 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3046215..3046823 Polaromonas naphthalenivorans CJ2 4686100 YP_983116.1 CDS Pnap_2896 NC_008781.1 3046842 3047351 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pol:Bpro_2868 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3046842..3047351 Polaromonas naphthalenivorans CJ2 4686856 YP_983117.1 CDS Pnap_2897 NC_008781.1 3047386 3048186 D PFAM: metallophosphoesterase; KEGG: pol:Bpro_2869 metallophosphoesterase; metallophosphoesterase 3047386..3048186 Polaromonas naphthalenivorans CJ2 4689961 YP_983118.1 CDS Pnap_2898 NC_008781.1 3048197 3048967 D PFAM: protein of unknown function DUF980; KEGG: pol:Bpro_2870 protein of unknown function DUF980; hypothetical protein 3048197..3048967 Polaromonas naphthalenivorans CJ2 4689978 YP_983119.1 CDS Pnap_2899 NC_008781.1 3049003 3050004 R KEGG: eba:p1B295 N6 adenine-specific DNA methyltransferase protein, N12 class; N6 adenine-specific DNA methyltransferase protein, N12 class complement(3049003..3050004) Polaromonas naphthalenivorans CJ2 4686274 YP_983120.1 CDS Pnap_2900 NC_008781.1 3050231 3050704 D KEGG: mma:MM3343 transposase; transposase 3050231..3050704 Polaromonas naphthalenivorans CJ2 4689997 YP_983121.1 CDS Pnap_2901 NC_008781.1 3050701 3051363 D KEGG: mma:MM3344 transposase; transposase 3050701..3051363 Polaromonas naphthalenivorans CJ2 4689315 YP_983122.1 CDS Pnap_2902 NC_008781.1 3051342 3053207 R KEGG: eba:p1B295 N6 adenine-specific DNA methyltransferase protein, N12 class; N6 adenine-specific DNA methyltransferase protein, N12 class complement(3051342..3053207) Polaromonas naphthalenivorans CJ2 4688024 YP_983123.1 CDS Pnap_2903 NC_008781.1 3053347 3056193 R KEGG: pol:Bpro_2871 hypothetical protein; hypothetical protein complement(3053347..3056193) Polaromonas naphthalenivorans CJ2 4687963 YP_983124.1 CDS Pnap_2904 NC_008781.1 3056407 3060303 R PFAM: protein of unknown function DUF748; KEGG: pol:Bpro_2872 protein of unknown function DUF748; hypothetical protein complement(3056407..3060303) Polaromonas naphthalenivorans CJ2 4687693 YP_983125.1 CDS Pnap_2905 NC_008781.1 3060384 3060716 D hypothetical protein 3060384..3060716 Polaromonas naphthalenivorans CJ2 4688465 YP_983126.1 CDS Pnap_2906 NC_008781.1 3061067 3061987 D PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_2873 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 3061067..3061987 Polaromonas naphthalenivorans CJ2 4686790 YP_983127.1 CDS glyA NC_008781.1 3062218 3063462 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3062218..3063462 Polaromonas naphthalenivorans CJ2 4687176 YP_983128.1 CDS nrdR NC_008781.1 3063563 3064012 D PFAM: ATP-cone domain protein; KEGG: pol:Bpro_2875 protein of unknown function DUF193; transcriptional regulator NrdR 3063563..3064012 Polaromonas naphthalenivorans CJ2 4690000 YP_983129.1 CDS Pnap_2909 NC_008781.1 3064116 3064682 D KEGG: pol:Bpro_2877 methylation; pilus assembly protein 3064116..3064682 Polaromonas naphthalenivorans CJ2 4689351 YP_983130.1 CDS Pnap_2910 NC_008781.1 3064673 3065251 D TIGRFAM: type IV pilus modification protein PilV; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV; type IV pilus modification protein PilV 3064673..3065251 Polaromonas naphthalenivorans CJ2 4690097 YP_983131.1 CDS Pnap_2911 NC_008781.1 3065238 3066065 D KEGG: bps:BPSL2754 putative membrane protein; Tfp pilus assembly protein PilW-like protein 3065238..3066065 Polaromonas naphthalenivorans CJ2 4690102 YP_983132.1 CDS Pnap_2912 NC_008781.1 3066072 3066869 D Tfp pilus assembly protein PilX-like protein 3066072..3066869 Polaromonas naphthalenivorans CJ2 4689425 YP_983133.1 CDS Pnap_2913 NC_008781.1 3066903 3070349 D KEGG: pae:PA4554 type 4 fimbrial biogenesis protein PilY1; type 4 fimbrial biogenesis protein PilY1 3066903..3070349 Polaromonas naphthalenivorans CJ2 4688635 YP_983134.1 CDS Pnap_2914 NC_008781.1 3070371 3070805 D KEGG: xcv:XCV2814 type IV pilin PilE; type IV pilin PilE 3070371..3070805 Polaromonas naphthalenivorans CJ2 4686463 YP_983135.1 CDS Pnap_2915 NC_008781.1 3070810 3071922 D KEGG: pol:Bpro_2883 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 3070810..3071922 Polaromonas naphthalenivorans CJ2 4688738 YP_983136.1 CDS Pnap_2916 NC_008781.1 3072033 3072692 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3072033..3072692 Polaromonas naphthalenivorans CJ2 4688861 YP_983137.1 CDS Pnap_2917 NC_008781.1 3072689 3073795 D PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: pol:Bpro_2885 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3072689..3073795 Polaromonas naphthalenivorans CJ2 4690001 YP_983138.1 CDS ribH NC_008781.1 3073820 3074284 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 3073820..3074284 Polaromonas naphthalenivorans CJ2 4689375 YP_983139.1 CDS nusB NC_008781.1 3074319 3074840 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 3074319..3074840 Polaromonas naphthalenivorans CJ2 4688205 YP_983140.1 CDS Pnap_2920 NC_008781.1 3074869 3076065 D PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2888 aminotransferase, class I and II; aminotransferase 3074869..3076065 Polaromonas naphthalenivorans CJ2 4689511 YP_983141.1 CDS Pnap_2921 NC_008781.1 3076196 3076651 D PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2889 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 3076196..3076651 Polaromonas naphthalenivorans CJ2 4688936 YP_983142.1 CDS Pnap_2922 NC_008781.1 3076667 3077359 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2890 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3076667..3077359 Polaromonas naphthalenivorans CJ2 4686488 YP_983143.1 CDS Pnap_2923 NC_008781.1 3077378 3077812 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2891 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 3077378..3077812 Polaromonas naphthalenivorans CJ2 4688264 YP_983144.1 CDS Pnap_2924 NC_008781.1 3077846 3079111 D TIGRFAM: TonB family protein; PFAM: TolA family protein; KEGG: pol:Bpro_2892 TonB-like; TonB family protein 3077846..3079111 Polaromonas naphthalenivorans CJ2 4690044 YP_983145.1 CDS Pnap_2925 NC_008781.1 3079179 3082700 R KEGG: pol:Bpro_2893 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(3079179..3082700) Polaromonas naphthalenivorans CJ2 4689633 YP_983146.1 CDS Pnap_2926 NC_008781.1 3082781 3083542 D PFAM: Rhodanese domain protein; KEGG: pol:Bpro_2894 rhodanese-like; rhodanese superfamily protein 3082781..3083542 Polaromonas naphthalenivorans CJ2 4687657 YP_983147.1 CDS Pnap_2927 NC_008781.1 3083587 3084900 D PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein; hypothetical protein 3083587..3084900 Polaromonas naphthalenivorans CJ2 4689000 YP_983148.1 CDS Pnap_2928 NC_008781.1 3084902 3085816 R PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_2897 pirin-like; pirin domain-containing protein complement(3084902..3085816) Polaromonas naphthalenivorans CJ2 4689578 YP_983149.1 CDS Pnap_2929 NC_008781.1 3085874 3086455 R KEGG: pol:Bpro_2899 putative flavodoxin; putative flavodoxin complement(3085874..3086455) Polaromonas naphthalenivorans CJ2 4688653 YP_983150.1 CDS Pnap_2930 NC_008781.1 3086452 3086865 R PFAM: DoxX family protein; KEGG: pol:Bpro_2900 DoxX; DoxX family protein complement(3086452..3086865) Polaromonas naphthalenivorans CJ2 4686643 YP_983151.1 CDS Pnap_2931 NC_008781.1 3086981 3087682 R PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_2901 pirin-like; pirin domain-containing protein complement(3086981..3087682) Polaromonas naphthalenivorans CJ2 4687470 YP_983152.1 CDS Pnap_2932 NC_008781.1 3087792 3088745 D PFAM: regulatory protein, LysR; helix-turn-helix, Fis-type; LysR, substrate-binding; KEGG: pol:Bpro_2902 transcriptional regulator, LysR family; LysR family transcriptional regulator 3087792..3088745 Polaromonas naphthalenivorans CJ2 4688127 YP_983153.1 CDS Pnap_2933 NC_008781.1 3088807 3089958 D KEGG: pol:Bpro_2903 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3088807..3089958 Polaromonas naphthalenivorans CJ2 4689088 YP_983154.1 CDS Pnap_2934 NC_008781.1 3089971 3090954 D PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: pol:Bpro_2904 glutamate--tRNA ligase; glutamate--tRNA ligase 3089971..3090954 Polaromonas naphthalenivorans CJ2 4690190 YP_983155.1 CDS Pnap_2935 NC_008781.1 3090927 3091787 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRB0783 hypothetical protein; hypothetical protein 3090927..3091787 Polaromonas naphthalenivorans CJ2 4689690 YP_983156.1 CDS trmB NC_008781.1 3091819 3092559 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3091819..3092559 Polaromonas naphthalenivorans CJ2 4687612 YP_983157.1 CDS Pnap_2937 NC_008781.1 3092556 3093464 D PFAM: pseudouridine synthase; KEGG: pol:Bpro_2906 pseudouridine synthase; pseudouridine synthase 3092556..3093464 Polaromonas naphthalenivorans CJ2 4690058 YP_983158.1 CDS Pnap_2938 NC_008781.1 3093570 3094691 R PFAM: transglutaminase domain protein; KEGG: pol:Bpro_2907 hypothetical protein; transglutaminase domain-containing protein complement(3093570..3094691) Polaromonas naphthalenivorans CJ2 4686376 YP_983159.1 CDS Pnap_2939 NC_008781.1 3094865 3095404 R PFAM: Redoxin domain protein; KEGG: pol:Bpro_2908 thiol-disulfide isomerase and thioredoxins-like; redoxin domain-containing protein complement(3094865..3095404) Polaromonas naphthalenivorans CJ2 4686205 YP_983160.1 CDS Pnap_2940 NC_008781.1 3095505 3097034 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_1632 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase complement(3095505..3097034) Polaromonas naphthalenivorans CJ2 4686371 YP_983161.1 CDS Pnap_2941 NC_008781.1 3097031 3097825 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(3097031..3097825) Polaromonas naphthalenivorans CJ2 4686897 YP_983162.1 CDS Pnap_2942 NC_008781.1 3097825 3099108 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: pol:Bpro_1630 oxidoreductase FAD/NAD(P)-binding; FadD27 protein complement(3097825..3099108) Polaromonas naphthalenivorans CJ2 4686607 YP_983163.1 CDS Pnap_2943 NC_008781.1 3099265 3100692 R KEGG: pol:Bpro_1629 benzoyl-CoA oxygenase component B; benzoyl-CoA oxygenase component B complement(3099265..3100692) Polaromonas naphthalenivorans CJ2 4687318 YP_983164.1 CDS Pnap_2944 NC_008781.1 3100797 3102455 R cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; benzoyl-CoA-dihydrodiol lyase complement(3100797..3102455) Polaromonas naphthalenivorans CJ2 4687218 YP_983165.1 CDS Pnap_2945 NC_008781.1 3102572 3103546 R consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate; anaerobic benzoate catabolism transcriptional regulator complement(3102572..3103546) Polaromonas naphthalenivorans CJ2 4687826 YP_983166.1 CDS Pnap_2946 NC_008781.1 3103634 3104101 D KEGG: pol:Bpro_1626 hypothetical protein; hypothetical protein 3103634..3104101 Polaromonas naphthalenivorans CJ2 4689509 YP_983167.1 CDS Pnap_2947 NC_008781.1 3104122 3105693 D PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_1625 aldehyde dehydrogenase; aldehyde dehydrogenase 3104122..3105693 Polaromonas naphthalenivorans CJ2 4689611 YP_983168.1 CDS Pnap_2948 NC_008781.1 3105719 3107302 D TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_1624 benzoate-CoA ligase family; benzoate-CoA ligase family 3105719..3107302 Polaromonas naphthalenivorans CJ2 4687994 YP_983169.1 CDS Pnap_2949 NC_008781.1 3107299 3108114 D PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0215 alpha/beta hydrolase; alpha/beta hydrolase fold protein 3107299..3108114 Polaromonas naphthalenivorans CJ2 4686225 YP_983170.1 CDS Pnap_2950 NC_008781.1 3108111 3109274 D PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0214 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3108111..3109274 Polaromonas naphthalenivorans CJ2 4688197 YP_983171.1 CDS Pnap_2951 NC_008781.1 3109415 3110362 D PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0213 inner-membrane translocator; inner-membrane translocator 3109415..3110362 Polaromonas naphthalenivorans CJ2 4689027 YP_983172.1 CDS Pnap_2952 NC_008781.1 3110359 3111360 D PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0212 inner-membrane translocator; inner-membrane translocator 3110359..3111360 Polaromonas naphthalenivorans CJ2 4686758 YP_983173.1 CDS Pnap_2953 NC_008781.1 3111347 3112123 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0211 ABC transporter related; ABC transporter-like protein 3111347..3112123 Polaromonas naphthalenivorans CJ2 4686181 YP_983174.1 CDS Pnap_2954 NC_008781.1 3112125 3112844 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0210 ABC transporter related; ABC transporter-like protein 3112125..3112844 Polaromonas naphthalenivorans CJ2 4686979 YP_983175.1 CDS Pnap_2955 NC_008781.1 3113605 3116034 R KEGG: pol:Bpro_2032 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(3113605..3116034) Polaromonas naphthalenivorans CJ2 4690046 YP_983176.1 CDS clpX NC_008781.1 3116153 3117418 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3116153..3117418) Polaromonas naphthalenivorans CJ2 4689266 YP_983177.1 CDS Pnap_2957 NC_008781.1 3117555 3118205 R KEGG: pol:Bpro_2030 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP complement(3117555..3118205) Polaromonas naphthalenivorans CJ2 4688618 YP_983178.1 CDS tig NC_008781.1 3118303 3119613 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3118303..3119613) Polaromonas naphthalenivorans CJ2 4687966 YP_983179.1 CDS Pnap_2959 NC_008781.1 3119932 3123147 R PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2028 acriflavin resistance protein; acriflavin resistance protein complement(3119932..3123147) Polaromonas naphthalenivorans CJ2 4689501 YP_983180.1 CDS Pnap_2960 NC_008781.1 3123155 3124318 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2027 secretion protein HlyD; RND family efflux transporter MFP subunit complement(3123155..3124318) Polaromonas naphthalenivorans CJ2 4686485 YP_983181.1 CDS Pnap_2961 NC_008781.1 3124416 3125309 D PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2018 squalene/phytoene synthase; squalene/phytoene synthase 3124416..3125309 Polaromonas naphthalenivorans CJ2 4688902 YP_983182.1 CDS Pnap_2962 NC_008781.1 3125367 3126737 R KEGG: neu:NE2521 hypothetical protein; hypothetical protein complement(3125367..3126737) Polaromonas naphthalenivorans CJ2 4687305 YP_983183.1 CDS Pnap_2963 NC_008781.1 3126737 3128818 R KEGG: neu:NE2520 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ complement(3126737..3128818) Polaromonas naphthalenivorans CJ2 4688270 YP_983184.1 CDS Pnap_2964 NC_008781.1 3129092 3129973 D PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2017 squalene/phytoene synthase; squalene/phytoene synthase 3129092..3129973 Polaromonas naphthalenivorans CJ2 4689238 YP_983185.1 CDS Pnap_2965 NC_008781.1 3129978 3131249 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: pol:Bpro_2016 amine oxidase; amine oxidase 3129978..3131249 Polaromonas naphthalenivorans CJ2 4687814 YP_983186.1 CDS Pnap_2966 NC_008781.1 3131483 3132283 R PFAM: MltA-interacting MipA family protein; KEGG: rso:RSc2284 putative transmembrane protein; MltA-interacting MipA family protein complement(3131483..3132283) Polaromonas naphthalenivorans CJ2 4688247 YP_983187.1 CDS Pnap_2967 NC_008781.1 3132343 3135441 R PFAM: acriflavin resistance protein; KEGG: rso:RS03086 probable transporter transmembrane protein; acriflavin resistance protein complement(3132343..3135441) Polaromonas naphthalenivorans CJ2 4688296 YP_983188.1 CDS Pnap_2968 NC_008781.1 3135438 3136679 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS03087 putative cation-efflux system signal peptide protein; RND family efflux transporter MFP subunit complement(3135438..3136679) Polaromonas naphthalenivorans CJ2 4686980 YP_983189.1 CDS Pnap_2969 NC_008781.1 3136676 3138241 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS05806 putative outer membrane lipoprotein; RND efflux system outer membrane lipoprotein complement(3136676..3138241) Polaromonas naphthalenivorans CJ2 4687487 YP_983190.1 CDS Pnap_2970 NC_008781.1 3138524 3139216 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS03088 probable two-component response regulator transcription regulator protein; two component transcriptional regulator 3138524..3139216 Polaromonas naphthalenivorans CJ2 4690009 YP_983191.1 CDS Pnap_2971 NC_008781.1 3139238 3140326 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rso:RS03089 probable two-component transmembrane sensor kinase transcription regulator protein; integral membrane sensor signal transduction histidine kinase 3139238..3140326 Polaromonas naphthalenivorans CJ2 4690036 YP_983192.1 CDS Pnap_2972 NC_008781.1 3140528 3141223 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_2014 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase complement(3140528..3141223) Polaromonas naphthalenivorans CJ2 4688647 YP_983193.1 CDS hemH NC_008781.1 3141244 3142347 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 3141244..3142347 Polaromonas naphthalenivorans CJ2 4687235 YP_983194.1 CDS Pnap_2974 NC_008781.1 3142370 3143095 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tpa:TP0407 phosphoglycolate phosphatase (gph-1); hydrolase complement(3142370..3143095) Polaromonas naphthalenivorans CJ2 4688830 YP_983195.1 CDS Pnap_2975 NC_008781.1 3143199 3143789 D KEGG: nmu:Nmul_A2145 hypothetical protein; hypothetical protein 3143199..3143789 Polaromonas naphthalenivorans CJ2 4689635 YP_983196.1 CDS Pnap_2976 NC_008781.1 3143921 3144397 R PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_3543 MaoC-like dehydratase; dehydratase complement(3143921..3144397) Polaromonas naphthalenivorans CJ2 4688171 YP_983197.1 CDS Pnap_2977 NC_008781.1 3144466 3145704 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3544 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3144466..3145704) Polaromonas naphthalenivorans CJ2 4689108 YP_983198.1 CDS Pnap_2978 NC_008781.1 3145697 3146209 R PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3545 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3145697..3146209) Polaromonas naphthalenivorans CJ2 4687371 YP_983199.1 CDS Pnap_2979 NC_008781.1 3146260 3146808 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3546 phenylacetic acid degradation-related protein; hypothetical protein 3146260..3146808 Polaromonas naphthalenivorans CJ2 4686095 YP_983200.1 CDS Pnap_2980 NC_008781.1 3146840 3147553 R KEGG: rfr:Rfer_0082 hypothetical protein; hypothetical protein complement(3146840..3147553) Polaromonas naphthalenivorans CJ2 4686696 YP_983201.1 CDS Pnap_2981 NC_008781.1 3147566 3149335 R PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: pol:Bpro_2822 peptidoglycan-binding domain 1; peptidoglycan-binding domain-containing protein complement(3147566..3149335) Polaromonas naphthalenivorans CJ2 4687386 YP_983202.1 CDS Pnap_2982 NC_008781.1 3149396 3150688 D PFAM: protein of unknown function DUF1504; KEGG: nmu:Nmul_A2290 protein of unknown function DUF1504; hypothetical protein 3149396..3150688 Polaromonas naphthalenivorans CJ2 4688341 YP_983203.1 CDS Pnap_2983 NC_008781.1 3150704 3151708 R PFAM: sodium/calcium exchanger membrane region; KEGG: rfr:Rfer_3080 sodium/calcium exchanger membrane protein; sodium/calcium exchanger membrane region complement(3150704..3151708) Polaromonas naphthalenivorans CJ2 4686700 YP_983204.1 CDS Pnap_2984 NC_008781.1 3151815 3152225 D KEGG: pol:Bpro_3549 glyoxalase I; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 3151815..3152225 Polaromonas naphthalenivorans CJ2 4687279 YP_983205.1 CDS Pnap_2985 NC_008781.1 3152447 3153109 R KEGG: pol:Bpro_3550 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase complement(3152447..3153109) Polaromonas naphthalenivorans CJ2 4687544 YP_983206.1 CDS Pnap_2986 NC_008781.1 3153100 3154941 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(3153100..3154941) Polaromonas naphthalenivorans CJ2 4687953 YP_983207.1 CDS Pnap_2987 NC_008781.1 3155152 3155691 R PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_3552 OmpA/MotB; OmpA/MotB domain-containing protein complement(3155152..3155691) Polaromonas naphthalenivorans CJ2 4686798 YP_983208.1 CDS Pnap_2988 NC_008781.1 3155733 3156344 D PFAM: ChaC family protein; KEGG: pol:Bpro_3553 ChaC-like protein; ChaC family protein 3155733..3156344 Polaromonas naphthalenivorans CJ2 4688721 YP_983209.1 CDS Pnap_2989 NC_008781.1 3156360 3157007 D KEGG: pol:Bpro_3559 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase 3156360..3157007 Polaromonas naphthalenivorans CJ2 4688886 YP_983210.1 CDS Pnap_2990 NC_008781.1 3157012 3157515 R KEGG: pol:Bpro_3560 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(3157012..3157515) Polaromonas naphthalenivorans CJ2 4689946 YP_983211.1 CDS Pnap_2991 NC_008781.1 3157531 3159153 R TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: pol:Bpro_3561 poly(A) polymerase; poly(A) polymerase complement(3157531..3159153) Polaromonas naphthalenivorans CJ2 4689718 YP_983212.1 CDS Pnap_2992 NC_008781.1 3159276 3159983 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_3562 HAD-superfamily subfamily IB, PSPase-like; HAD family hydrolase complement(3159276..3159983) Polaromonas naphthalenivorans CJ2 4689289 YP_983213.1 CDS Pnap_2993 NC_008781.1 3159980 3160687 R PFAM: Chromosomal replication initiator, DnaA; KEGG: pol:Bpro_3564 chromosomal replication initiator, DnaA; chromosomal replication initiator DnaA complement(3159980..3160687) Polaromonas naphthalenivorans CJ2 4689229 YP_983214.1 CDS Pnap_2994 NC_008781.1 3160968 3162005 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3160968..3162005 Polaromonas naphthalenivorans CJ2 4688637 YP_983215.1 CDS Pnap_2995 NC_008781.1 3162440 3162856 D hypothetical protein 3162440..3162856 Polaromonas naphthalenivorans CJ2 4688780 YP_983216.1 CDS Pnap_2996 NC_008781.1 3162881 3163354 D KEGG: mma:MM3343 transposase; transposase 3162881..3163354 Polaromonas naphthalenivorans CJ2 4688131 YP_983217.1 CDS Pnap_2997 NC_008781.1 3163351 3164013 D KEGG: mma:MM3344 transposase; transposase 3163351..3164013 Polaromonas naphthalenivorans CJ2 4687800 YP_983218.1 CDS Pnap_2998 NC_008781.1 3164670 3165047 D PFAM: protein of unknown function DUF891; KEGG: xfa:XFa0034 hypothetical protein; hypothetical protein 3164670..3165047 Polaromonas naphthalenivorans CJ2 4686149 YP_983219.1 CDS Pnap_2999 NC_008781.1 3165028 3165363 D PFAM: helix-turn-helix domain protein; KEGG: nmu:Nmul_D2814 transcriptional regulator, XRE family; XRE family transcriptional regulator 3165028..3165363 Polaromonas naphthalenivorans CJ2 4686519 YP_983220.1 CDS Pnap_3000 NC_008781.1 3165551 3166744 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3567 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3165551..3166744 Polaromonas naphthalenivorans CJ2 4687439 YP_983221.1 CDS Pnap_3001 NC_008781.1 3166898 3167506 D PFAM: isochorismatase hydrolase; KEGG: rfr:Rfer_2520 isochorismatase hydrolase; isochorismatase hydrolase 3166898..3167506 Polaromonas naphthalenivorans CJ2 4688073 YP_983222.1 CDS Pnap_3002 NC_008781.1 3167503 3168513 D PFAM: ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_2523 transcriptional regulator, AraC family; AraC family transcriptional regulator 3167503..3168513 Polaromonas naphthalenivorans CJ2 4689384 YP_983223.1 CDS Pnap_3003 NC_008781.1 3168561 3169412 R KEGG: pol:Bpro_3568 hypothetical protein; hypothetical protein complement(3168561..3169412) Polaromonas naphthalenivorans CJ2 4686264 YP_983224.1 CDS Pnap_3004 NC_008781.1 3169507 3171072 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: pol:Bpro_3569 integral membrane protein MviN; integral membrane protein MviN complement(3169507..3171072) Polaromonas naphthalenivorans CJ2 4688985 YP_983225.1 CDS Pnap_3005 NC_008781.1 3171334 3173451 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: reu:Reut_B4866 TonB-dependent receptor; TonB-dependent receptor 3171334..3173451 Polaromonas naphthalenivorans CJ2 4688030 YP_983226.1 CDS Pnap_3006 NC_008781.1 3173509 3174177 D PFAM: Ankyrin; KEGG: reu:Reut_B5420 ankyrin; ankyrin 3173509..3174177 Polaromonas naphthalenivorans CJ2 4686805 YP_983227.1 CDS Pnap_3007 NC_008781.1 3174400 3176121 D PFAM: Pyrrolo-quinoline quinone; KEGG: reu:Reut_B5419 pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 3174400..3176121 Polaromonas naphthalenivorans CJ2 4689606 YP_983228.1 CDS Pnap_3008 NC_008781.1 3176155 3176745 D PFAM: cytochrome c, class I; KEGG: reu:Reut_B5418 cytochrome c, class I; class I cytochrome c 3176155..3176745 Polaromonas naphthalenivorans CJ2 4686354 YP_983229.1 CDS rpsT NC_008781.1 3176867 3177187 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3176867..3177187 Polaromonas naphthalenivorans CJ2 4687546 YP_983230.1 CDS Pnap_3010 NC_008781.1 3177325 3177645 R KEGG: pol:Bpro_3571 hypothetical protein; hypothetical protein complement(3177325..3177645) Polaromonas naphthalenivorans CJ2 4686396 YP_983231.1 CDS Pnap_3011 NC_008781.1 3177886 3179100 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 3177886..3179100 Polaromonas naphthalenivorans CJ2 4686345 YP_983232.1 CDS Pnap_3012 NC_008781.1 3179110 3180039 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 3179110..3180039 Polaromonas naphthalenivorans CJ2 4686497 YP_983233.1 CDS Pnap_3013 NC_008781.1 3180309 3181829 D PFAM: aldehyde dehydrogenase; KEGG: eba:ebA2242 aldehyde dehydrogenase; aldehyde dehydrogenase 3180309..3181829 Polaromonas naphthalenivorans CJ2 4686236 YP_983234.1 CDS Pnap_3014 NC_008781.1 3181950 3182744 D KEGG: dar:Daro_0143 hypothetical protein; hypothetical protein 3181950..3182744 Polaromonas naphthalenivorans CJ2 4687116 YP_983235.1 CDS Pnap_3015 NC_008781.1 3182741 3183742 D KEGG: dar:Daro_0142 hypothetical protein; hypothetical protein 3182741..3183742 Polaromonas naphthalenivorans CJ2 4686928 YP_983236.1 CDS Pnap_3016 NC_008781.1 3183791 3184156 D KEGG: gka:GK3199 hypothetical protein; hypothetical protein 3183791..3184156 Polaromonas naphthalenivorans CJ2 4687198 YP_983237.1 CDS Pnap_3017 NC_008781.1 3184175 3184927 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_3587 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3184175..3184927) Polaromonas naphthalenivorans CJ2 4687964 YP_983238.1 CDS Pnap_3018 NC_008781.1 3185135 3185806 D PFAM: cyclase family protein; KEGG: bbr:BB3259 hypothetical protein; cyclase family protein 3185135..3185806 Polaromonas naphthalenivorans CJ2 4687813 YP_983239.1 CDS Pnap_3019 NC_008781.1 3185827 3187104 D TIGRFAM: kynureninase; PFAM: aminotransferase, class V; KEGG: pol:Bpro_3589 kynureninase; kynureninase 3185827..3187104 Polaromonas naphthalenivorans CJ2 4688159 YP_983240.1 CDS Pnap_3020 NC_008781.1 3187106 3187954 D PFAM: tryptophan 2,3-dioxygenase; KEGG: pol:Bpro_3590 tryptophan 2,3-dioxygenase; tryptophan 2,3-dioxygenase 3187106..3187954 Polaromonas naphthalenivorans CJ2 4688573 YP_983241.1 CDS Pnap_3021 NC_008781.1 3188242 3188862 D PFAM: protein of unknown function DUF1449; KEGG: tbd:Tbd_2219 hypothetical protein; hypothetical protein 3188242..3188862 Polaromonas naphthalenivorans CJ2 4688347 YP_983242.1 CDS Pnap_3022 NC_008781.1 3188888 3190600 D PFAM: band 7 protein; KEGG: stm:STM3199 hypothetical protein; hypothetical protein 3188888..3190600 Polaromonas naphthalenivorans CJ2 4688638 YP_983243.1 CDS Pnap_3023 NC_008781.1 3190704 3191981 R PFAM: monooxygenase, FAD-binding; KEGG: pol:Bpro_3591 salicylate 1-monooxygenase; FAD-binding monooxygenase complement(3190704..3191981) Polaromonas naphthalenivorans CJ2 4689363 YP_983244.1 CDS Pnap_3024 NC_008781.1 3192052 3195021 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(3192052..3195021) Polaromonas naphthalenivorans CJ2 4689175 YP_983245.1 CDS Pnap_3025 NC_008781.1 3195100 3196515 D PFAM: peptidase U32; KEGG: cvi:CV1955 probable protease; peptidase U32 3195100..3196515 Polaromonas naphthalenivorans CJ2 4689226 YP_983246.1 CDS Pnap_3026 NC_008781.1 3196512 3196742 D KEGG: rpc:RPC_4373 hypothetical protein; hypothetical protein 3196512..3196742 Polaromonas naphthalenivorans CJ2 4689582 YP_983247.1 CDS Pnap_3027 NC_008781.1 3196850 3199465 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(3196850..3199465) Polaromonas naphthalenivorans CJ2 4690045 YP_983248.1 CDS Pnap_3028 NC_008781.1 3199540 3200211 R KEGG: pol:Bpro_3596 hypothetical protein; hypothetical protein complement(3199540..3200211) Polaromonas naphthalenivorans CJ2 4690157 YP_983249.1 CDS Pnap_3029 NC_008781.1 3200241 3201230 R PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase; HpcH/HpaI aldolase complement(3200241..3201230) Polaromonas naphthalenivorans CJ2 4690192 YP_983250.1 CDS Pnap_3030 NC_008781.1 3201325 3202311 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(3201325..3202311) Polaromonas naphthalenivorans CJ2 4689791 YP_983251.1 CDS Pnap_3031 NC_008781.1 3202526 3203386 D PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pol:Bpro_3599 transcriptional regulator, GntR family; UbiC transcription regulator-associated domain-containing protein 3202526..3203386 Polaromonas naphthalenivorans CJ2 4689758 YP_983252.1 CDS Pnap_3032 NC_008781.1 3203516 3203962 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pol:Bpro_3600 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 3203516..3203962 Polaromonas naphthalenivorans CJ2 4689307 YP_983253.1 CDS Pnap_3033 NC_008781.1 3204039 3204404 D KEGG: pol:Bpro_3601 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 3204039..3204404 Polaromonas naphthalenivorans CJ2 4689591 YP_983254.1 CDS Pnap_3034 NC_008781.1 3204466 3206259 D KEGG: pol:Bpro_3602 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase, flavoprotein subunit 3204466..3206259 Polaromonas naphthalenivorans CJ2 4689527 YP_983255.1 CDS Pnap_3035 NC_008781.1 3206303 3207007 D TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: pol:Bpro_3603 succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 3206303..3207007 Polaromonas naphthalenivorans CJ2 4689361 YP_983256.1 CDS Pnap_3036 NC_008781.1 3207030 3207338 D PFAM: protein of unknown function DUF339; KEGG: pol:Bpro_3604 protein of unknown function DUF339; hypothetical protein 3207030..3207338 Polaromonas naphthalenivorans CJ2 4690012 YP_983257.1 CDS gltA NC_008781.1 3207373 3208683 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3207373..3208683 Polaromonas naphthalenivorans CJ2 4689330 YP_983258.1 CDS Pnap_3038 NC_008781.1 3208913 3209878 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3607 transcriptional regulator, LysR family; LysR family transcriptional regulator 3208913..3209878 Polaromonas naphthalenivorans CJ2 4688959 YP_983259.1 CDS Pnap_3039 NC_008781.1 3209909 3211360 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 3209909..3211360 Polaromonas naphthalenivorans CJ2 4688815 YP_983260.1 CDS leuD NC_008781.1 3211375 3212025 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 3211375..3212025 Polaromonas naphthalenivorans CJ2 4688424 YP_983261.1 CDS Pnap_3041 NC_008781.1 3212099 3213169 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3212099..3213169 Polaromonas naphthalenivorans CJ2 4688483 YP_983262.1 CDS Pnap_3042 NC_008781.1 3213429 3214568 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3213429..3214568 Polaromonas naphthalenivorans CJ2 4688482 YP_983263.1 CDS Pnap_3043 NC_008781.1 3214820 3217432 D KEGG: pol:Bpro_3613 putative transmembrane protein; hypothetical protein 3214820..3217432 Polaromonas naphthalenivorans CJ2 4688280 YP_983264.1 CDS truA NC_008781.1 3217475 3218269 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 3217475..3218269 Polaromonas naphthalenivorans CJ2 4688232 YP_983265.1 CDS Pnap_3045 NC_008781.1 3218266 3218991 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: pol:Bpro_3615 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase 3218266..3218991 Polaromonas naphthalenivorans CJ2 4687214 YP_983266.1 CDS Pnap_3046 NC_008781.1 3218969 3220273 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 3218969..3220273 Polaromonas naphthalenivorans CJ2 4687617 YP_983267.1 CDS trpA NC_008781.1 3220270 3221088 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 3220270..3221088 Polaromonas naphthalenivorans CJ2 4688339 YP_983268.1 CDS Pnap_3048 NC_008781.1 3221248 3222120 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: pol:Bpro_3618 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta 3221248..3222120 Polaromonas naphthalenivorans CJ2 4687934 YP_983269.1 CDS Pnap_3049 NC_008781.1 3222216 3222920 D PFAM: peptidase S16, lon domain protein; KEGG: pol:Bpro_3619 peptidase S16, lon-like; peptidase S16, lon domain-containing protein 3222216..3222920 Polaromonas naphthalenivorans CJ2 4687215 YP_983270.1 CDS lysS NC_008781.1 3223068 3224633 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3223068..3224633 Polaromonas naphthalenivorans CJ2 4687535 YP_983271.1 CDS Pnap_3051 NC_008781.1 3224962 3225579 D KEGG: hypothetical protein; hypothetical protein 3224962..3225579 Polaromonas naphthalenivorans CJ2 4687454 YP_983272.1 CDS Pnap_3052 NC_008781.1 3225668 3226852 R PFAM: Patatin; KEGG: pol:Bpro_3621 patatin; patatin complement(3225668..3226852) Polaromonas naphthalenivorans CJ2 4686964 YP_983273.1 CDS Pnap_3053 NC_008781.1 3226937 3228868 R KEGG: bba:Bd3647 predicted membrane protein; hypothetical protein complement(3226937..3228868) Polaromonas naphthalenivorans CJ2 4687294 YP_983274.1 CDS Pnap_3054 NC_008781.1 3228912 3229223 D hypothetical protein 3228912..3229223 Polaromonas naphthalenivorans CJ2 4687261 YP_983275.1 CDS Pnap_3055 NC_008781.1 3229220 3229729 D PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_3622 protein of unknown function DUF45; hypothetical protein 3229220..3229729 Polaromonas naphthalenivorans CJ2 4686846 YP_983276.1 CDS Pnap_3056 NC_008781.1 3229752 3230810 R PFAM: glycoside hydrolase, family 3 domain protein; KEGG: pol:Bpro_3630 glycoside hydrolase, family 3-like; glycoside hydrolase family protein complement(3229752..3230810) Polaromonas naphthalenivorans CJ2 4686781 YP_983277.1 CDS acpS NC_008781.1 3230876 3231268 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3230876..3231268) Polaromonas naphthalenivorans CJ2 4686695 YP_983278.1 CDS Pnap_3058 NC_008781.1 3231268 3232098 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(3231268..3232098) Polaromonas naphthalenivorans CJ2 4687055 YP_983279.1 CDS Pnap_3059 NC_008781.1 3232123 3232872 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: pol:Bpro_3633 DNA repair protein RecO; DNA repair protein RecO complement(3232123..3232872) Polaromonas naphthalenivorans CJ2 4686197 YP_983280.1 CDS Pnap_3060 NC_008781.1 3232921 3233994 R TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; Miro domain protein; KEGG: pol:Bpro_3634 GTP-binding protein Era; GTP-binding protein Era complement(3232921..3233994) Polaromonas naphthalenivorans CJ2 4688924 YP_983281.1 CDS rnc NC_008781.1 3234050 3234751 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(3234050..3234751) Polaromonas naphthalenivorans CJ2 4689865 YP_983282.1 CDS Pnap_3062 NC_008781.1 3234752 3235093 R KEGG: pol:Bpro_3636 putative transmembrane protein; hypothetical protein complement(3234752..3235093) Polaromonas naphthalenivorans CJ2 4689310 YP_983283.1 CDS Pnap_3063 NC_008781.1 3235163 3236140 R KEGG: pol:Bpro_3637 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I complement(3235163..3236140) Polaromonas naphthalenivorans CJ2 4689092 YP_983284.1 CDS Pnap_3064 NC_008781.1 3236140 3237951 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3236140..3237951) Polaromonas naphthalenivorans CJ2 4687604 YP_983285.1 CDS Pnap_3065 NC_008781.1 3238292 3239767 R TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pol:Bpro_3640 peptidase S1C, Do; protease Do complement(3238292..3239767) Polaromonas naphthalenivorans CJ2 4686807 YP_983286.1 CDS Pnap_3066 NC_008781.1 3239890 3240933 R KEGG: pol:Bpro_3641 putative sigma E regulatory protein, MucB/RseB; putative sigma E regulatory protein, MucB/RseB complement(3239890..3240933) Polaromonas naphthalenivorans CJ2 4686385 YP_983287.1 CDS Pnap_3067 NC_008781.1 3240935 3241576 R PFAM: Anti sigma-E protein RseA family protein; KEGG: pol:Bpro_3642 anti sigma-E protein, RseA, Burkholderiaceae specific; anti sigma-E protein RseA complement(3240935..3241576) Polaromonas naphthalenivorans CJ2 4686424 YP_983288.1 CDS Pnap_3068 NC_008781.1 3241659 3242294 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(3241659..3242294) Polaromonas naphthalenivorans CJ2 4686161 YP_983289.1 CDS Pnap_3069 NC_008781.1 3242291 3242827 R KEGG: pol:Bpro_3644 hypothetical protein; hypothetical protein complement(3242291..3242827) Polaromonas naphthalenivorans CJ2 4686246 YP_983290.1 CDS Pnap_3070 NC_008781.1 3242874 3244118 R PFAM: beta-ketoacyl synthase; KEGG: pol:Bpro_3645 beta-ketoacyl synthase; beta-ketoacyl synthase complement(3242874..3244118) Polaromonas naphthalenivorans CJ2 4687056 YP_983291.1 CDS acpP NC_008781.1 3244195 3244434 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3244195..3244434) Polaromonas naphthalenivorans CJ2 4687330 YP_983292.1 CDS Pnap_3072 NC_008781.1 3244600 3245346 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_3647 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(3244600..3245346) Polaromonas naphthalenivorans CJ2 4687404 YP_983293.1 CDS Pnap_3073 NC_008781.1 3245343 3246293 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: pol:Bpro_3648 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase complement(3245343..3246293) Polaromonas naphthalenivorans CJ2 4687730 YP_983294.1 CDS Pnap_3074 NC_008781.1 3246384 3247028 R KEGG: abo:ABO_1914 hypothetical protein; hypothetical protein complement(3246384..3247028) Polaromonas naphthalenivorans CJ2 4687823 YP_983295.1 CDS Pnap_3075 NC_008781.1 3247006 3248391 R KEGG: BNR/Asp-box repeat protein; BNR/Asp-box repeat-containing protein complement(3247006..3248391) Polaromonas naphthalenivorans CJ2 4688185 YP_983296.1 CDS Pnap_3076 NC_008781.1 3248444 3249421 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3248444..3249421) Polaromonas naphthalenivorans CJ2 4688543 YP_983297.1 CDS Pnap_3077 NC_008781.1 3249426 3250538 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(3249426..3250538) Polaromonas naphthalenivorans CJ2 4688805 YP_983298.1 CDS rpmF NC_008781.1 3250623 3250805 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(3250623..3250805) Polaromonas naphthalenivorans CJ2 4688670 YP_983299.1 CDS Pnap_3079 NC_008781.1 3251028 3251582 R PFAM: protein of unknown function DUF177; KEGG: pol:Bpro_3653 protein of unknown function DUF177; hypothetical protein complement(3251028..3251582) Polaromonas naphthalenivorans CJ2 4689386 YP_983300.1 CDS Pnap_3080 NC_008781.1 3251608 3252279 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pol:Bpro_3654 maf protein; maf protein 3251608..3252279 Polaromonas naphthalenivorans CJ2 4689179 YP_983301.1 CDS Pnap_3081 NC_008781.1 3252276 3253040 D KEGG: pol:Bpro_3655 putative transmembrane protein; hypothetical protein 3252276..3253040 Polaromonas naphthalenivorans CJ2 4689237 YP_983302.1 CDS Pnap_3082 NC_008781.1 3253111 3254193 R PFAM: peptidase S49; KEGG: pol:Bpro_3656 peptidase S49; peptidase S49 complement(3253111..3254193) Polaromonas naphthalenivorans CJ2 4689592 YP_983303.1 CDS Pnap_3083 NC_008781.1 3254215 3254580 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3657 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(3254215..3254580) Polaromonas naphthalenivorans CJ2 4690066 YP_983304.1 CDS Pnap_3084 NC_008781.1 3254596 3255255 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_3658 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(3254596..3255255) Polaromonas naphthalenivorans CJ2 4690160 YP_983305.1 CDS Pnap_3085 NC_008781.1 3255310 3256506 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_3659 pseudouridine synthase, RluD; RluA family pseudouridine synthase complement(3255310..3256506) Polaromonas naphthalenivorans CJ2 4690198 YP_983306.1 CDS Pnap_3086 NC_008781.1 3257099 3260329 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pol:Bpro_3660 ribonuclease, Rne/Rng family; ribonuclease 3257099..3260329 Polaromonas naphthalenivorans CJ2 4689936 YP_983307.1 CDS Pnap_3087 NC_008781.1 3260572 3261861 R PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein; HemY domain-containing protein complement(3260572..3261861) Polaromonas naphthalenivorans CJ2 4689752 YP_983308.1 CDS Pnap_3088 NC_008781.1 3261894 3263054 R PFAM: protein of unknown function DUF513, hemX; KEGG: rfr:Rfer_1717 protein of unknown function DUF513, HemX; hypothetical protein complement(3261894..3263054) Polaromonas naphthalenivorans CJ2 4689706 YP_983309.1 CDS Pnap_3089 NC_008781.1 3263051 3263914 R KEGG: rfr:Rfer_1716 uroporphyrinogen III synthase; uroporphyrinogen III synthase complement(3263051..3263914) Polaromonas naphthalenivorans CJ2 4689567 YP_983310.1 CDS hemC NC_008781.1 3263928 3264923 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(3263928..3264923) Polaromonas naphthalenivorans CJ2 4689032 YP_983311.1 CDS Pnap_3091 NC_008781.1 3264965 3267913 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 3264965..3267913 Polaromonas naphthalenivorans CJ2 4689093 YP_983312.1 CDS Pnap_3092 NC_008781.1 3268035 3268295 D KEGG: pol:Bpro_3666 hypothetical protein; hypothetical protein 3268035..3268295 Polaromonas naphthalenivorans CJ2 4690018 YP_983313.1 CDS Pnap_3093 NC_008781.1 3268301 3276496 D PFAM: putative carbohydrate binding; glycosyltransferase 36; KEGG: pol:Bpro_3667 cyclic beta 1-2 glucan synthetase; glycosyltransferase 3268301..3276496 Polaromonas naphthalenivorans CJ2 4689335 YP_983314.1 CDS Pnap_3094 NC_008781.1 3276710 3278569 D KEGG: reu:Reut_B4946 hypothetical protein; hypothetical protein 3276710..3278569 Polaromonas naphthalenivorans CJ2 4688977 YP_983315.1 CDS Pnap_3095 NC_008781.1 3278708 3279889 R PFAM: protein of unknown function UPF0118; KEGG: pol:Bpro_3669 protein of unknown function UPF0118; hypothetical protein complement(3278708..3279889) Polaromonas naphthalenivorans CJ2 4688809 YP_983316.1 CDS Pnap_3096 NC_008781.1 3280035 3280778 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: pol:Bpro_3670 transcriptional regulator, LytR/AlgR family; response regulator receiver protein complement(3280035..3280778) Polaromonas naphthalenivorans CJ2 4688415 YP_983317.1 CDS Pnap_3097 NC_008781.1 3280775 3281893 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: pol:Bpro_3671 histidine kinase internal region; histidine kinase complement(3280775..3281893) Polaromonas naphthalenivorans CJ2 4688515 YP_983318.1 CDS Pnap_3098 NC_008781.1 3282049 3283458 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 3282049..3283458 Polaromonas naphthalenivorans CJ2 4688704 YP_983319.1 CDS Pnap_3099 NC_008781.1 3283530 3283811 R KEGG: bbr:BB2140 hypothetical protein; hypothetical protein complement(3283530..3283811) Polaromonas naphthalenivorans CJ2 4688307 YP_983320.1 CDS Pnap_3100 NC_008781.1 3283786 3284064 R PFAM: protein of unknown function DUF497; KEGG: yps:YPTB1901 hypothetical protein; hypothetical protein complement(3283786..3284064) Polaromonas naphthalenivorans CJ2 4688263 YP_983321.1 CDS Pnap_3101 NC_008781.1 3284094 3284378 D hypothetical protein 3284094..3284378 Polaromonas naphthalenivorans CJ2 4688142 YP_983322.1 CDS Pnap_3102 NC_008781.1 3284543 3285088 D TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin; phasin family protein 3284543..3285088 Polaromonas naphthalenivorans CJ2 4688008 YP_983323.1 CDS Pnap_3103 NC_008781.1 3285215 3286867 D KEGG: pol:Bpro_2832 hypothetical protein; hypothetical protein 3285215..3286867 Polaromonas naphthalenivorans CJ2 4687705 YP_983324.1 CDS Pnap_3104 NC_008781.1 3286937 3288106 D SMART: AAA ATPase; KEGG: pol:Bpro_0407 hypothetical protein; ATPase AAA 3286937..3288106 Polaromonas naphthalenivorans CJ2 4688335 YP_983325.1 CDS Pnap_3105 NC_008781.1 3288249 3288908 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_3674 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3288249..3288908 Polaromonas naphthalenivorans CJ2 4687638 YP_983326.1 CDS Pnap_3106 NC_008781.1 3288905 3290257 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_3675 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3288905..3290257 Polaromonas naphthalenivorans CJ2 4687630 YP_983327.1 CDS Pnap_3107 NC_008781.1 3290336 3291850 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pol:Bpro_3676 peptidase S1C, Do; protease Do 3290336..3291850 Polaromonas naphthalenivorans CJ2 4687541 YP_983328.1 CDS Pnap_3108 NC_008781.1 3292192 3293274 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase; transposase IS116/IS110/IS902 family protein 3292192..3293274 Polaromonas naphthalenivorans CJ2 4687236 YP_983329.1 CDS Pnap_3109 NC_008781.1 3294034 3294636 R hypothetical protein complement(3294034..3294636) Polaromonas naphthalenivorans CJ2 4686901 YP_983330.1 CDS Pnap_3110 NC_008781.1 3294896 3300895 D PFAM: alpha-2-macroglobulin domain protein; KEGG: reu:Reut_A3385 alpha-2-macroglobulin, N-terminal; alpha-2-macroglobulin domain-containing protein 3294896..3300895 Polaromonas naphthalenivorans CJ2 4687041 YP_983331.1 CDS Pnap_3111 NC_008781.1 3301453 3302793 D KEGG: ava:Ava_4845 parallel beta-helix repeat; hypothetical protein 3301453..3302793 Polaromonas naphthalenivorans CJ2 4687263 YP_983332.1 CDS Pnap_3112 NC_008781.1 3302934 3303620 R hypothetical protein complement(3302934..3303620) Polaromonas naphthalenivorans CJ2 4686912 YP_983333.1 CDS Pnap_3113 NC_008781.1 3303799 3304680 R KEGG: sgl:SG2354 hypothetical protein; hypothetical protein complement(3303799..3304680) Polaromonas naphthalenivorans CJ2 4686806 YP_983334.1 CDS Pnap_3115 NC_008781.1 3305181 3306287 R KEGG: aba:Acid345_4387 hypothetical protein; hypothetical protein complement(3305181..3306287) Polaromonas naphthalenivorans CJ2 4689489 YP_983335.1 CDS Pnap_3116 NC_008781.1 3306301 3306969 R PFAM: sugar transferase; KEGG: eba:ebA5903 probable sugar transferase, WBGY; sugar transferase complement(3306301..3306969) Polaromonas naphthalenivorans CJ2 4687136 YP_983336.1 CDS Pnap_3117 NC_008781.1 3306972 3308171 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: eba:ebA5901 predicted nucleoside-diphosphate sugar epimerase; polysaccharide biosynthesis protein CapD complement(3306972..3308171) Polaromonas naphthalenivorans CJ2 4687133 YP_983337.1 CDS Pnap_3118 NC_008781.1 3308168 3309304 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sat:SYN_01128 nucleotide-sugar aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(3308168..3309304) Polaromonas naphthalenivorans CJ2 4687127 YP_983338.1 CDS Pnap_3119 NC_008781.1 3309376 3310614 R PFAM: glycosyl transferase, group 1; KEGG: cvi:CV4119 probable glycosyltransferase; group 1 glycosyl transferase complement(3309376..3310614) Polaromonas naphthalenivorans CJ2 4687138 YP_983339.1 CDS Pnap_3120 NC_008781.1 3310835 3311953 R PFAM: glycosyl transferase, group 1; KEGG: pae:PA3149 probable glycosyltransferase WbpH; group 1 glycosyl transferase complement(3310835..3311953) Polaromonas naphthalenivorans CJ2 4688812 YP_983340.1 CDS Pnap_3121 NC_008781.1 3312222 3313508 R KEGG: pae:PA3154 B-band O-antigen polymerase; hypothetical protein complement(3312222..3313508) Polaromonas naphthalenivorans CJ2 4687121 YP_983341.1 CDS Pnap_3122 NC_008781.1 3313711 3314853 R KEGG: pae:PA3150 LPS biosynthesis protein WbpG; LPS biosynthesis protein WbpG complement(3313711..3314853) Polaromonas naphthalenivorans CJ2 4687156 YP_983342.1 CDS Pnap_3123 NC_008781.1 3314854 3315615 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(3314854..3315615) Polaromonas naphthalenivorans CJ2 4686105 YP_983343.1 CDS Pnap_3124 NC_008781.1 3315617 3316225 R TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: mmp:MMP1082 similar to bacterial imidazoleglycerol-phosphate synthase, amidotransferase subunit; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit complement(3315617..3316225) Polaromonas naphthalenivorans CJ2 4687153 YP_983344.1 CDS Pnap_3125 NC_008781.1 3316222 3317481 R PFAM: polysaccharide biosynthesis protein; KEGG: pae:PA3153 O-antigen translocase; polysaccharide biosynthesis protein complement(3316222..3317481) Polaromonas naphthalenivorans CJ2 4687152 YP_983345.1 CDS Pnap_3126 NC_008781.1 3317478 3318584 R PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pae:PA3155 probable aminotransferase WbpE; DegT/DnrJ/EryC1/StrS aminotransferase complement(3317478..3318584) Polaromonas naphthalenivorans CJ2 4690159 YP_983346.1 CDS Pnap_3127 NC_008781.1 3319086 3319460 D hypothetical protein 3319086..3319460 Polaromonas naphthalenivorans CJ2 4687147 YP_983347.1 CDS Pnap_3128 NC_008781.1 3319500 3320084 R KEGG: pae:PA3156 probable acetyltransferase WbpD; putative acetyltransferase WbpD complement(3319500..3320084) Polaromonas naphthalenivorans CJ2 4687150 YP_983348.1 CDS Pnap_3129 NC_008781.1 3320081 3321028 R PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pae:PA3158 probable oxidoreductase WpbB; oxidoreductase domain-containing protein complement(3320081..3321028) Polaromonas naphthalenivorans CJ2 4687151 YP_983349.1 CDS Pnap_3130 NC_008781.1 3321046 3322347 R PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: msu:MS1501 WecC protein; UDP-glucose/GDP-mannose dehydrogenase complement(3321046..3322347) Polaromonas naphthalenivorans CJ2 4687143 YP_983350.1 CDS Pnap_3131 NC_008781.1 3322406 3323509 R PFAM: glycosyl transferase, family 4; KEGG: eba:ebA6781 putative glycosyl transferase, family 4; glycosyl transferase family protein complement(3322406..3323509) Polaromonas naphthalenivorans CJ2 4686242 YP_983351.1 CDS Pnap_3132 NC_008781.1 3323588 3325831 R TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: rso:RSp1018 eps I polysaccharide export transmembrane protein; exopolysaccharide transport family protein complement(3323588..3325831) Polaromonas naphthalenivorans CJ2 4687286 YP_983352.1 CDS Pnap_3133 NC_008781.1 3325841 3327094 R PFAM: polysaccharide export protein; KEGG: bcn:Bcen_4169 polysaccharide export protein; polysaccharide export protein complement(3325841..3327094) Polaromonas naphthalenivorans CJ2 4687135 YP_983353.1 CDS Pnap_3134 NC_008781.1 3327333 3327881 R PFAM: transcription antitermination protein NusG; KEGG: cbu:CBU_0826 transcriptional antitermination protein, putative; NusG antitermination factor complement(3327333..3327881) Polaromonas naphthalenivorans CJ2 4687134 YP_983354.1 CDS Pnap_3135 NC_008781.1 3328325 3329098 D putative methyl-accepting chemotaxis sensory transducer 3328325..3329098 Polaromonas naphthalenivorans CJ2 4687131 YP_983355.1 CDS Pnap_3136 NC_008781.1 3329103 3329639 D KEGG: nha:Nham_3622 OmpA/MotB; hypothetical protein 3329103..3329639 Polaromonas naphthalenivorans CJ2 4687129 YP_983356.1 CDS Pnap_3137 NC_008781.1 3329672 3331246 D PFAM: Peptidoglycan-binding domain 1 protein; extracellular solute-binding protein, family 1; KEGG: sde:Sde_1367 transcription factor jumonji, JmjC; extracellular solute-binding protein 3329672..3331246 Polaromonas naphthalenivorans CJ2 4687145 YP_983357.1 CDS Pnap_3138 NC_008781.1 3331248 3332120 D hypothetical protein 3331248..3332120 Polaromonas naphthalenivorans CJ2 4687130 YP_983358.1 CDS Pnap_3139 NC_008781.1 3332176 3332886 D PFAM: PspA/IM30 family protein; KEGG: ava:Ava_0161 phage shock protein A, PspA; phage shock protein A, PspA 3332176..3332886 Polaromonas naphthalenivorans CJ2 4687128 YP_983359.1 CDS Pnap_3140 NC_008781.1 3332905 3334758 D PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_5695 ATPase, AAA family; ATPase central domain-containing protein 3332905..3334758 Polaromonas naphthalenivorans CJ2 4687291 YP_983360.1 CDS Pnap_3141 NC_008781.1 3334793 3335251 D hypothetical protein 3334793..3335251 Polaromonas naphthalenivorans CJ2 4687126 YP_983361.1 CDS Pnap_3142 NC_008781.1 3335287 3337515 D TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; Penicillin-binding domain protein; KEGG: rme:Rmet_3529 penicillin-binding protein 1C; penicillin-binding protein 1C 3335287..3337515 Polaromonas naphthalenivorans CJ2 4687123 YP_983362.1 CDS Pnap_3143 NC_008781.1 3337543 3338028 R PFAM: regulatory protein, MarR; KEGG: bja:bll0108 transcriptional regulatory protein; MarR family transcriptional regulator complement(3337543..3338028) Polaromonas naphthalenivorans CJ2 4687139 YP_983363.1 CDS Pnap_3144 NC_008781.1 3338173 3339375 D catalyzes the formation of catechol from salicylate; salicylate hydroxylase 3338173..3339375 Polaromonas naphthalenivorans CJ2 4686632 YP_983364.1 CDS Pnap_3145 NC_008781.1 3339416 3340471 D PFAM: Cupin 2, conserved barrel domain protein; KEGG: eba:ebA1373 gentisate 1,2-dioxygenase; cupin 3339416..3340471 Polaromonas naphthalenivorans CJ2 4686434 YP_983365.1 CDS Pnap_3146 NC_008781.1 3340503 3341210 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA1377 fumarylpyruvate hydrolase; fumarylacetoacetate (FAA) hydrolase 3340503..3341210 Polaromonas naphthalenivorans CJ2 4686229 YP_983366.1 CDS Pnap_3147 NC_008781.1 3341221 3341859 D TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: eba:ebA1379 maleylpyruvate isomerase; maleylacetoacetate isomerase 3341221..3341859 Polaromonas naphthalenivorans CJ2 4687109 YP_983367.1 CDS Pnap_3148 NC_008781.1 3341965 3342975 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065; hypothetical protein 3341965..3342975 Polaromonas naphthalenivorans CJ2 4687124 YP_983368.1 CDS Pnap_3149 NC_008781.1 3343039 3344229 R KEGG: rme:Rmet_1779 hypothetical protein; hypothetical protein complement(3343039..3344229) Polaromonas naphthalenivorans CJ2 4687122 YP_983369.1 CDS Pnap_3150 NC_008781.1 3344460 3344774 D hypothetical protein 3344460..3344774 Polaromonas naphthalenivorans CJ2 4687141 YP_983370.1 CDS Pnap_3151 NC_008781.1 3344977 3346044 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcn:Bcen_3232 transposase, IS605 OrfB; IS605 family transposase OrfB 3344977..3346044 Polaromonas naphthalenivorans CJ2 4687115 YP_983371.1 CDS Pnap_3152 NC_008781.1 3346232 3348265 R PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: eba:ebA4169 bacterial type II secretion system protein E; type II secretion system protein E complement(3346232..3348265) Polaromonas naphthalenivorans CJ2 4687117 YP_983372.1 CDS Pnap_3153 NC_008781.1 3348418 3350472 R PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: eba:ebA4169 bacterial type II secretion system protein E; type II secretion system protein E complement(3348418..3350472) Polaromonas naphthalenivorans CJ2 4687118 YP_983373.1 CDS Pnap_3154 NC_008781.1 3350664 3351809 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3678 L-lactate dehydrogenase (cytochrome); L-lactate dehydrogenase (cytochrome) 3350664..3351809 Polaromonas naphthalenivorans CJ2 4687146 YP_983374.1 CDS Pnap_3155 NC_008781.1 3351857 3352429 D KEGG: cps:CPS_2852 hypothetical protein; hypothetical protein 3351857..3352429 Polaromonas naphthalenivorans CJ2 4687120 YP_983375.1 CDS Pnap_3156 NC_008781.1 3352551 3353468 R PFAM: cytochrome c, class I; KEGG: pol:Bpro_3695 cytochrome c, class I; class I cytochrome c complement(3352551..3353468) Polaromonas naphthalenivorans CJ2 4687111 YP_983376.1 CDS Pnap_3157 NC_008781.1 3353651 3354472 R PFAM: alpha/beta hydrolase fold; KEGG: aci:ACIAD2748 putative peroxidase/hydrolase; alpha/beta hydrolase fold protein complement(3353651..3354472) Polaromonas naphthalenivorans CJ2 4687107 YP_983377.1 CDS Pnap_3158 NC_008781.1 3354608 3355420 R hypothetical protein complement(3354608..3355420) Polaromonas naphthalenivorans CJ2 4687110 YP_983378.1 CDS Pnap_3159 NC_008781.1 3355544 3356839 D PFAM: UMUC domain protein DNA-repair protein; KEGG: pol:Bpro_3696 DNA-directed DNA polymerase; DNA-directed DNA polymerase 3355544..3356839 Polaromonas naphthalenivorans CJ2 4687300 YP_983379.1 CDS Pnap_3160 NC_008781.1 3357058 3358227 D KEGG: pol:Bpro_0151 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 3357058..3358227 Polaromonas naphthalenivorans CJ2 4687072 YP_983380.1 CDS Pnap_3161 NC_008781.1 3358351 3359277 D KEGG: xac:XAC2710 hypothetical protein; hypothetical protein 3358351..3359277 Polaromonas naphthalenivorans CJ2 4687057 YP_983381.1 CDS Pnap_3162 NC_008781.1 3359312 3359755 D PFAM: globin; KEGG: hne:HNE_2581 protozoan/cyanobacterial globin family protein; globin 3359312..3359755 Polaromonas naphthalenivorans CJ2 4687307 YP_983382.1 CDS Pnap_3163 NC_008781.1 3359768 3360424 D KEGG: psp:PSPPH_3940 hypothetical protein; hypothetical protein 3359768..3360424 Polaromonas naphthalenivorans CJ2 4687012 YP_983383.1 CDS queF NC_008781.1 3360482 3361327 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(3360482..3361327) Polaromonas naphthalenivorans CJ2 4687014 YP_983384.1 CDS Pnap_3165 NC_008781.1 3361344 3362252 R PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3711 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(3361344..3362252) Polaromonas naphthalenivorans CJ2 4686985 YP_983385.1 CDS Pnap_3166 NC_008781.1 3362329 3363105 R PFAM: protein of unknown function DUF328; KEGG: pol:Bpro_3713 protein of unknown function DUF328; hypothetical protein complement(3362329..3363105) Polaromonas naphthalenivorans CJ2 4686227 YP_983386.1 CDS Pnap_3167 NC_008781.1 3363200 3364087 R KEGG: pol:Bpro_3277 hypothetical protein; hypothetical protein complement(3363200..3364087) Polaromonas naphthalenivorans CJ2 4686983 YP_983387.1 CDS Pnap_3168 NC_008781.1 3364407 3365279 R KEGG: pol:Bpro_3277 hypothetical protein; hypothetical protein complement(3364407..3365279) Polaromonas naphthalenivorans CJ2 4686558 YP_983388.1 CDS Pnap_3169 NC_008781.1 3365468 3368407 D TIGRFAM: valyl-tRNA synthetase; KEGG: pol:Bpro_3721 valyl-tRNA synthetase; valyl-tRNA synthetase 3365468..3368407 Polaromonas naphthalenivorans CJ2 4687199 YP_983389.1 CDS Pnap_3170 NC_008781.1 3368456 3368689 R PFAM: SirA family protein; KEGG: pol:Bpro_3724 SirA-like; SirA family protein complement(3368456..3368689) Polaromonas naphthalenivorans CJ2 4687076 YP_983390.1 CDS Pnap_3171 NC_008781.1 3368761 3369294 R PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3725 NUDIX hydrolase; NUDIX hydrolase complement(3368761..3369294) Polaromonas naphthalenivorans CJ2 4687190 YP_983391.1 CDS cysM NC_008781.1 3369388 3370290 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(3369388..3370290) Polaromonas naphthalenivorans CJ2 4686605 YP_983392.1 CDS Pnap_3173 NC_008781.1 3370434 3371858 R PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: ecc:c3804 hypothetical protein YdcM; transposase, IS605 OrfB complement(3370434..3371858) Polaromonas naphthalenivorans CJ2 4687380 YP_983393.1 CDS Pnap_3174 NC_008781.1 3372081 3372644 R PFAM: NUDIX hydrolase; KEGG: spt:SPA0759 putative O-antigen biosynthesis protein; NUDIX hydrolase complement(3372081..3372644) Polaromonas naphthalenivorans CJ2 4689220 YP_983394.1 CDS Pnap_3175 NC_008781.1 3372644 3373549 R TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: rso:RSc2237 probable UTP--glucose-1-phosphate uridylyltransferase protein; UTP-glucose-1-phosphate uridylyltransferase GalU complement(3372644..3373549) Polaromonas naphthalenivorans CJ2 4687408 YP_983395.1 CDS Pnap_3176 NC_008781.1 3373776 3375146 R PFAM: sugar transferase; KEGG: eba:ebA1531 colanic biosynthesis UDP-glucose lipid carrier transferase; sugar transferase complement(3373776..3375146) Polaromonas naphthalenivorans CJ2 4687197 YP_983396.1 CDS Pnap_3177 NC_008781.1 3375128 3375493 R hypothetical protein complement(3375128..3375493) Polaromonas naphthalenivorans CJ2 4687202 YP_983397.1 CDS Pnap_3178 NC_008781.1 3375518 3376765 R PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_5856 glycosyl transferase, group 1; putative glycosyl transferase complement(3375518..3376765) Polaromonas naphthalenivorans CJ2 4687340 YP_983398.1 CDS Pnap_3179 NC_008781.1 3376984 3378072 R PFAM: acyltransferase 3; KEGG: rsp:RSP_4028 acyltransferase 3 family; acyltransferase 3 complement(3376984..3378072) Polaromonas naphthalenivorans CJ2 4687410 YP_983399.1 CDS Pnap_3180 NC_008781.1 3378331 3379461 R KEGG: eli:ELI_01380 hypothetical protein; hypothetical protein complement(3378331..3379461) Polaromonas naphthalenivorans CJ2 4686075 YP_983400.1 CDS Pnap_3181 NC_008781.1 3379469 3380281 R PFAM: glycosyl transferase, family 2; KEGG: bxe:Bxe_C1077 putative glycosyltransferase; glycosyl transferase family protein complement(3379469..3380281) Polaromonas naphthalenivorans CJ2 4687232 YP_983401.1 CDS Pnap_3182 NC_008781.1 3380274 3380831 R KEGG: bxe:Bxe_C1078 putative acetyltransferase; putative acetyltransferase complement(3380274..3380831) Polaromonas naphthalenivorans CJ2 4687436 YP_983402.1 CDS Pnap_3183 NC_008781.1 3380828 3381985 R PFAM: glycosyl transferase, group 1; KEGG: bxe:Bxe_A3856 putative transferase; group 1 glycosyl transferase complement(3380828..3381985) Polaromonas naphthalenivorans CJ2 4687446 YP_983403.1 CDS Pnap_3184 NC_008781.1 3382000 3382671 R KEGG: sha:SH2127 hypothetical protein; hypothetical protein complement(3382000..3382671) Polaromonas naphthalenivorans CJ2 4686617 YP_983404.1 CDS Pnap_3185 NC_008781.1 3382668 3383468 R PFAM: glycosyl transferase, family 2; KEGG: eli:ELI_12215 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(3382668..3383468) Polaromonas naphthalenivorans CJ2 4686576 YP_983405.1 CDS Pnap_3186 NC_008781.1 3383458 3384711 R KEGG: eli:ELI_12240 hypothetical protein; hypothetical protein complement(3383458..3384711) Polaromonas naphthalenivorans CJ2 4687490 YP_983406.1 CDS Pnap_3187 NC_008781.1 3384782 3385783 R PFAM: glycosyl transferase, family 2; KEGG: ava:Ava_0268 glycosyl transferase, family 2; glycosyl transferase family protein complement(3384782..3385783) Polaromonas naphthalenivorans CJ2 4687954 YP_983407.1 CDS Pnap_3188 NC_008781.1 3385877 3386767 R exopolysaccharide biosynthesis protein-like protein complement(3385877..3386767) Polaromonas naphthalenivorans CJ2 4686603 YP_983408.1 CDS Pnap_3189 NC_008781.1 3386777 3388117 R PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cch:Cag_0665 probable polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(3386777..3388117) Polaromonas naphthalenivorans CJ2 4687717 YP_983409.1 CDS Pnap_3190 NC_008781.1 3388472 3389575 R TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_1237 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase complement(3388472..3389575) Polaromonas naphthalenivorans CJ2 4686384 YP_983410.1 CDS Pnap_3191 NC_008781.1 3389657 3390631 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_1235 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3389657..3390631) Polaromonas naphthalenivorans CJ2 4686620 YP_983411.1 CDS Pnap_3192 NC_008781.1 3390641 3392101 R KEGG: pfl:PFL_5483 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(3390641..3392101) Polaromonas naphthalenivorans CJ2 4686532 YP_983412.1 CDS Pnap_3193 NC_008781.1 3392217 3392969 R KEGG: rfr:Rfer_2675 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(3392217..3392969) Polaromonas naphthalenivorans CJ2 4686549 YP_983413.1 CDS Pnap_3194 NC_008781.1 3392976 3395219 R TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: rso:RSp1018 eps I polysaccharide export transmembrane protein; exopolysaccharide transport family protein complement(3392976..3395219) Polaromonas naphthalenivorans CJ2 4686276 YP_983414.1 CDS Pnap_3195 NC_008781.1 3395231 3395674 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ade:Adeh_4276 tyrosine phosphatase; protein tyrosine phosphatase complement(3395231..3395674) Polaromonas naphthalenivorans CJ2 4690142 YP_983415.1 CDS Pnap_3196 NC_008781.1 3395688 3396863 R PFAM: polysaccharide export protein; KEGG: bam:Bamb_6483 polysaccharide export protein; polysaccharide export protein complement(3395688..3396863) Polaromonas naphthalenivorans CJ2 4686085 YP_983416.1 CDS Pnap_3197 NC_008781.1 3396883 3397122 R hypothetical protein complement(3396883..3397122) Polaromonas naphthalenivorans CJ2 4686143 YP_983417.1 CDS Pnap_3198 NC_008781.1 3397174 3397728 R PFAM: transcription antitermination protein NusG; KEGG: neu:NE0468 putative transcriptional activator; NusG antitermination factor complement(3397174..3397728) Polaromonas naphthalenivorans CJ2 4686179 YP_983418.1 CDS Pnap_3199 NC_008781.1 3398067 3399413 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pol:Bpro_1519 protein of unknown function DUF21; hypothetical protein complement(3398067..3399413) Polaromonas naphthalenivorans CJ2 4686164 YP_983419.1 CDS apaH NC_008781.1 3399429 3400286 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3399429..3400286 Polaromonas naphthalenivorans CJ2 4686439 YP_983420.1 CDS Pnap_3201 NC_008781.1 3400343 3401272 R PFAM: ribonuclease BN; KEGG: pol:Bpro_1517 ribonuclease BN; ribonuclease BN complement(3400343..3401272) Polaromonas naphthalenivorans CJ2 4686511 YP_983421.1 CDS Pnap_3202 NC_008781.1 3401389 3402852 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_1516 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(3401389..3402852) Polaromonas naphthalenivorans CJ2 4686157 YP_983422.1 CDS Pnap_3203 NC_008781.1 3403056 3403988 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: pol:Bpro_3789 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3403056..3403988) Polaromonas naphthalenivorans CJ2 4688782 YP_983423.1 CDS Pnap_3204 NC_008781.1 3404051 3405091 D catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 3404051..3405091 Polaromonas naphthalenivorans CJ2 4688556 YP_983424.1 CDS Pnap_3205 NC_008781.1 3405191 3405910 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3793 ABC transporter related; ABC transporter-like protein complement(3405191..3405910) Polaromonas naphthalenivorans CJ2 4688575 YP_983425.1 CDS Pnap_3206 NC_008781.1 3405924 3406691 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3794 ABC transporter related; ABC transporter-like protein complement(3405924..3406691) Polaromonas naphthalenivorans CJ2 4687927 YP_983426.1 CDS Pnap_3207 NC_008781.1 3406703 3407815 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_3795 inner-membrane translocator; inner-membrane translocator complement(3406703..3407815) Polaromonas naphthalenivorans CJ2 4688389 YP_983427.1 CDS Pnap_3208 NC_008781.1 3407851 3408780 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_3796 inner-membrane translocator; inner-membrane translocator complement(3407851..3408780) Polaromonas naphthalenivorans CJ2 4688715 YP_983428.1 CDS Pnap_3209 NC_008781.1 3409037 3410335 R PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_3797 AAA ATPase, central region; recombination factor protein RarA complement(3409037..3410335) Polaromonas naphthalenivorans CJ2 4688281 YP_983429.1 CDS Pnap_3210 NC_008781.1 3410387 3411037 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rfr:Rfer_3177 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(3410387..3411037) Polaromonas naphthalenivorans CJ2 4688234 YP_983430.1 CDS Pnap_3211 NC_008781.1 3411043 3413499 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: pol:Bpro_3799 cell divisionFtsK/SpoIIIE; cell division protein FtsK complement(3411043..3413499) Polaromonas naphthalenivorans CJ2 4687920 YP_983431.1 CDS Pnap_3212 NC_008781.1 3413578 3414267 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pol:Bpro_3800 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator complement(3413578..3414267) Polaromonas naphthalenivorans CJ2 4688256 YP_983432.1 CDS Pnap_3213 NC_008781.1 3414439 3415383 D KEGG: pol:Bpro_3801 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 3414439..3415383 Polaromonas naphthalenivorans CJ2 4687914 YP_983433.1 CDS rpmB NC_008781.1 3415576 3415809 D required for 70S ribosome assembly; 50S ribosomal protein L28 3415576..3415809 Polaromonas naphthalenivorans CJ2 4687886 YP_983434.1 CDS rpmG NC_008781.1 3415821 3415988 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3415821..3415988 Polaromonas naphthalenivorans CJ2 4688143 YP_983435.1 CDS Pnap_3216 NC_008781.1 3416221 3417420 R PFAM: fatty acid desaturase; KEGG: pol:Bpro_3804 fatty acid desaturase; fatty acid desaturase complement(3416221..3417420) Polaromonas naphthalenivorans CJ2 4688183 YP_983436.1 CDS Pnap_3217 NC_008781.1 3417600 3418853 R PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun); Fmu (Sun) domain-containing protein complement(3417600..3418853) Polaromonas naphthalenivorans CJ2 4687877 YP_983437.1 CDS Pnap_3218 NC_008781.1 3418908 3419144 D PFAM: protein of unknown function DUF1653; KEGG: pol:Bpro_3807 protein of unknown function DUF1653; hypothetical protein 3418908..3419144 Polaromonas naphthalenivorans CJ2 4688348 YP_983438.1 CDS prfC NC_008781.1 3419182 3420798 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 3419182..3420798 Polaromonas naphthalenivorans CJ2 4687774 YP_983439.1 CDS Pnap_3220 NC_008781.1 3420872 3421795 R KEGG: pol:Bpro_3822 hypothetical protein; hypothetical protein complement(3420872..3421795) Polaromonas naphthalenivorans CJ2 4688032 YP_983440.1 CDS Pnap_3221 NC_008781.1 3421845 3422312 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_3830 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(3421845..3422312) Polaromonas naphthalenivorans CJ2 4688046 YP_983441.1 CDS purN NC_008781.1 3422342 3422938 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(3422342..3422938) Polaromonas naphthalenivorans CJ2 4688080 YP_983442.1 CDS Pnap_3223 NC_008781.1 3422957 3423619 D PFAM: protein of unknown function DUF480; KEGG: pol:Bpro_3844 protein of unknown function DUF480; hypothetical protein 3422957..3423619 Polaromonas naphthalenivorans CJ2 4687821 YP_983443.1 CDS Pnap_3224 NC_008781.1 3423672 3424853 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3845 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3423672..3424853 Polaromonas naphthalenivorans CJ2 4688000 YP_983444.1 CDS Pnap_3225 NC_008781.1 3424881 3425996 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3846 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3424881..3425996 Polaromonas naphthalenivorans CJ2 4687625 YP_983445.1 CDS Pnap_3226 NC_008781.1 3426001 3426945 R PFAM: protein of unknown function UPF0187; KEGG: pcr:Pcryo_1229 protein of unknown function UPF0187; hypothetical protein complement(3426001..3426945) Polaromonas naphthalenivorans CJ2 4688525 YP_983446.1 CDS Pnap_3227 NC_008781.1 3427025 3427582 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_3847 HNH endonuclease; HNH endonuclease complement(3427025..3427582) Polaromonas naphthalenivorans CJ2 4687690 YP_983447.1 CDS Pnap_3228 NC_008781.1 3427741 3428766 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 3427741..3428766 Polaromonas naphthalenivorans CJ2 4687724 YP_983448.1 CDS Pnap_3229 NC_008781.1 3428883 3431717 D TIGRFAM: isoleucyl-tRNA synthetase; KEGG: pol:Bpro_3849 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 3428883..3431717 Polaromonas naphthalenivorans CJ2 4687510 YP_983449.1 CDS lspA NC_008781.1 3431717 3432256 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3431717..3432256 Polaromonas naphthalenivorans CJ2 4687543 YP_983450.1 CDS Pnap_3231 NC_008781.1 3432368 3434026 D TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; KEGG: pol:Bpro_3851 Na/Pi cotransporter II-related; Na/Pi-cotransporter II-like protein 3432368..3434026 Polaromonas naphthalenivorans CJ2 4687227 YP_983451.1 CDS Pnap_3232 NC_008781.1 3434114 3435109 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_3853 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(3434114..3435109) Polaromonas naphthalenivorans CJ2 4687377 YP_983452.1 CDS Pnap_3233 NC_008781.1 3435254 3436153 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_1426 protein of unknown function DUF6, transmembrane; hypothetical protein 3435254..3436153 Polaromonas naphthalenivorans CJ2 4687359 YP_983453.1 CDS Pnap_3234 NC_008781.1 3436166 3436555 R hypothetical protein complement(3436166..3436555) Polaromonas naphthalenivorans CJ2 4686990 YP_983454.1 CDS Pnap_3235 NC_008781.1 3436555 3437349 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3876 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3436555..3437349) Polaromonas naphthalenivorans CJ2 4686910 YP_983455.1 CDS Pnap_3236 NC_008781.1 3437384 3438361 R PFAM: protein of unknown function DUF6, transmembrane; Protein of unknown function DUF250; KEGG: pol:Bpro_3877 protein of unknown function DUF6, transmembrane; hypothetical protein complement(3437384..3438361) Polaromonas naphthalenivorans CJ2 4687356 YP_983456.1 CDS Pnap_3237 NC_008781.1 3438555 3440066 R PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane; hypothetical protein complement(3438555..3440066) Polaromonas naphthalenivorans CJ2 4686968 YP_983457.1 CDS Pnap_3238 NC_008781.1 3440079 3440567 R PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468; hypothetical protein complement(3440079..3440567) Polaromonas naphthalenivorans CJ2 4686975 YP_983458.1 CDS Pnap_3239 NC_008781.1 3440725 3442527 R PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_3882 type II secretion system protein E; type II secretion system protein E complement(3440725..3442527) Polaromonas naphthalenivorans CJ2 4687568 YP_983459.1 CDS Pnap_3240 NC_008781.1 3442569 3443336 R KEGG: pol:Bpro_3883 hypothetical protein; hypothetical protein complement(3442569..3443336) Polaromonas naphthalenivorans CJ2 4687028 YP_983460.1 CDS Pnap_3241 NC_008781.1 3443394 3444473 R KEGG: rfr:Rfer_4383 hypothetical protein; hypothetical protein complement(3443394..3444473) Polaromonas naphthalenivorans CJ2 4687005 YP_983461.1 CDS Pnap_3242 NC_008781.1 3444460 3444957 R KEGG: pol:Bpro_3884 hypothetical protein; hypothetical protein complement(3444460..3444957) Polaromonas naphthalenivorans CJ2 4686934 YP_983462.1 CDS Pnap_3243 NC_008781.1 3444951 3445799 R PFAM: TatD-related deoxyribonuclease; KEGG: pol:Bpro_3885 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease complement(3444951..3445799) Polaromonas naphthalenivorans CJ2 4686814 YP_983463.1 CDS Pnap_3244 NC_008781.1 3446078 3447043 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: pol:Bpro_3890 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap 3446078..3447043 Polaromonas naphthalenivorans CJ2 4686252 YP_983464.1 CDS Pnap_3245 NC_008781.1 3447056 3448075 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: pol:Bpro_3891 ATPase associated with various cellular activities, AAA_3; ATPase 3447056..3448075 Polaromonas naphthalenivorans CJ2 4686811 YP_983465.1 CDS Pnap_3246 NC_008781.1 3448192 3449178 D PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3892 protein of unknown function DUF58; hypothetical protein 3448192..3449178 Polaromonas naphthalenivorans CJ2 4686713 YP_983466.1 CDS Pnap_3247 NC_008781.1 3449200 3450264 D PFAM: von Willebrand factor, type A; KEGG: pol:Bpro_3893 von Willebrand factor, type A; von Willebrand factor type A domain-containing protein 3449200..3450264 Polaromonas naphthalenivorans CJ2 4686697 YP_983467.1 CDS Pnap_3248 NC_008781.1 3450401 3450598 R hypothetical protein complement(3450401..3450598) Polaromonas naphthalenivorans CJ2 4686601 YP_983468.1 CDS Pnap_3249 NC_008781.1 3450652 3451803 R PFAM: Patatin; KEGG: rfr:Rfer_2026 patatin; patatin complement(3450652..3451803) Polaromonas naphthalenivorans CJ2 4686641 YP_983469.1 CDS Pnap_3250 NC_008781.1 3451885 3453219 R KEGG: pol:Bpro_3894 hypothetical protein; hypothetical protein complement(3451885..3453219) Polaromonas naphthalenivorans CJ2 4687302 YP_983470.1 CDS Pnap_3251 NC_008781.1 3453255 3454007 R KEGG: pol:Bpro_3895 hypothetical protein; hypothetical protein complement(3453255..3454007) Polaromonas naphthalenivorans CJ2 4686535 YP_983471.1 CDS Pnap_3252 NC_008781.1 3454056 3454655 R KEGG: pol:Bpro_3896 hypothetical protein; hypothetical protein complement(3454056..3454655) Polaromonas naphthalenivorans CJ2 4686177 YP_983472.1 CDS Pnap_3253 NC_008781.1 3454695 3454970 R PFAM: heat shock protein DnaJ domain protein; KEGG: pol:Bpro_3897 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein complement(3454695..3454970) Polaromonas naphthalenivorans CJ2 4686457 YP_983473.1 CDS Pnap_3254 NC_008781.1 3455260 3455757 D KEGG: pol:Bpro_4753 mucin-associated surface protein (MASP); mucin-associated surface protein 3455260..3455757 Polaromonas naphthalenivorans CJ2 4686459 YP_983474.1 CDS Pnap_3255 NC_008781.1 3455851 3456807 R KEGG: rfr:Rfer_3231 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system ATP-binding protein complement(3455851..3456807) Polaromonas naphthalenivorans CJ2 4686888 YP_983475.1 CDS Pnap_3256 NC_008781.1 3456800 3458056 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_1014 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein complement(3456800..3458056) Polaromonas naphthalenivorans CJ2 4686972 YP_983476.1 CDS Pnap_3257 NC_008781.1 3458115 3459065 D KEGG: pol:Bpro_1013 hypothetical protein; hypothetical protein 3458115..3459065 Polaromonas naphthalenivorans CJ2 4686289 YP_983477.1 CDS Pnap_3258 NC_008781.1 3459112 3460854 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: pol:Bpro_1012 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 3459112..3460854 Polaromonas naphthalenivorans CJ2 4686208 YP_983478.1 CDS Pnap_3259 NC_008781.1 3461143 3462267 R KEGG: eba:ebA3407 predicted TRAP-type uncharacterized transport system protein, periplasmic component; TRAP-type transport system periplasmic protein complement(3461143..3462267) Polaromonas naphthalenivorans CJ2 4690080 YP_983479.1 CDS Pnap_3260 NC_008781.1 3462300 3462698 R hypothetical protein complement(3462300..3462698) Polaromonas naphthalenivorans CJ2 4687712 YP_983480.1 CDS Pnap_3261 NC_008781.1 3462748 3465753 R KEGG: gvi:glr0982 hypothetical protein; hypothetical protein complement(3462748..3465753) Polaromonas naphthalenivorans CJ2 4687736 YP_983481.1 CDS Pnap_3262 NC_008781.1 3465901 3467301 R PFAM: filamentation induced by cAMP protein Fic; KEGG: eba:p2A75 hypothetical protein; filamentation induced by cAMP protein fic complement(3465901..3467301) Polaromonas naphthalenivorans CJ2 4687628 YP_983482.1 CDS Pnap_3263 NC_008781.1 3467481 3469133 R PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cfe:CF0624 DNA polymerase III epsilon chain; exonuclease complement(3467481..3469133) Polaromonas naphthalenivorans CJ2 4687671 YP_983483.1 CDS Pnap_3264 NC_008781.1 3469136 3470494 R KEGG: tde:TDE0593 internalin-related protein; hypothetical protein complement(3469136..3470494) Polaromonas naphthalenivorans CJ2 4687981 YP_983484.1 CDS Pnap_3265 NC_008781.1 3470542 3470772 R hypothetical protein complement(3470542..3470772) Polaromonas naphthalenivorans CJ2 4688011 YP_983485.1 CDS Pnap_3266 NC_008781.1 3470808 3471476 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_0022 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 3470808..3471476 Polaromonas naphthalenivorans CJ2 4687999 YP_983486.1 CDS Pnap_3267 NC_008781.1 3471579 3471770 D KEGG: rfr:Rfer_0021 hypothetical protein; hypothetical protein 3471579..3471770 Polaromonas naphthalenivorans CJ2 4687995 YP_983487.1 CDS Pnap_3268 NC_008781.1 3471912 3473015 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1011 ABC transporter related; ABC transporter-like protein 3471912..3473015 Polaromonas naphthalenivorans CJ2 4688037 YP_983488.1 CDS Pnap_3269 NC_008781.1 3473086 3474375 D KEGG: pol:Bpro_1010 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 3473086..3474375 Polaromonas naphthalenivorans CJ2 4688023 YP_983489.1 CDS Pnap_3270 NC_008781.1 3474402 3475316 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1009 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3474402..3475316 Polaromonas naphthalenivorans CJ2 4687452 YP_983490.1 CDS Pnap_3271 NC_008781.1 3475319 3476203 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1008 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3475319..3476203 Polaromonas naphthalenivorans CJ2 4688053 YP_983491.1 CDS Pnap_3272 NC_008781.1 3476200 3476910 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1007 transcriptional regulator, GntR family; GntR family transcriptional regulator 3476200..3476910 Polaromonas naphthalenivorans CJ2 4688076 YP_983492.1 CDS Pnap_3273 NC_008781.1 3476919 3477674 D PFAM: Asp/Glu racemase; KEGG: pol:Bpro_1006 Asp/Glu racemase; Asp/Glu racemase 3476919..3477674 Polaromonas naphthalenivorans CJ2 4688067 YP_983493.1 CDS Pnap_3274 NC_008781.1 3477743 3478606 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pol:Bpro_1005 PHP-like; phosphotransferase domain-containing protein 3477743..3478606 Polaromonas naphthalenivorans CJ2 4688139 YP_983494.1 CDS Pnap_3275 NC_008781.1 3478603 3479508 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_1004 putative transmembrane protein; hypothetical protein 3478603..3479508 Polaromonas naphthalenivorans CJ2 4687795 YP_983495.1 CDS Pnap_3276 NC_008781.1 3479519 3480154 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_1003 SUA5/YciO/YrdC/YwlC; Sua5/YciO/YrdC/YwlC family protein 3479519..3480154 Polaromonas naphthalenivorans CJ2 4688081 YP_983496.1 CDS Pnap_3277 NC_008781.1 3480188 3480856 D PFAM: peptidase M50; KEGG: rfr:Rfer_3239 peptidase M50; peptidase M50 3480188..3480856 Polaromonas naphthalenivorans CJ2 4688154 YP_983497.1 CDS Pnap_3278 NC_008781.1 3480892 3482211 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3480892..3482211 Polaromonas naphthalenivorans CJ2 4687873 YP_983498.1 CDS Pnap_3279 NC_008781.1 3482291 3482476 R PFAM: CsbD family protein; KEGG: nmu:Nmul_A1602 CsbD-like; CsbD family protein complement(3482291..3482476) Polaromonas naphthalenivorans CJ2 4688179 YP_983499.1 CDS Pnap_3280 NC_008781.1 3482574 3483314 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_2270 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(3482574..3483314) Polaromonas naphthalenivorans CJ2 4688165 YP_983500.1 CDS Pnap_3281 NC_008781.1 3483311 3485353 R KEGG: rfr:Rfer_2271 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(3483311..3485353) Polaromonas naphthalenivorans CJ2 4688201 YP_983501.1 CDS Pnap_3282 NC_008781.1 3485535 3487175 D PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA3433 acyl-CoA synthase; AMP-dependent synthetase and ligase 3485535..3487175 Polaromonas naphthalenivorans CJ2 4688204 YP_983502.1 CDS Pnap_3283 NC_008781.1 3487298 3488983 D PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pol:Bpro_1895 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 3487298..3488983 Polaromonas naphthalenivorans CJ2 4688578 YP_983503.1 CDS Pnap_3284 NC_008781.1 3489028 3489504 D PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_C6351 MaoC-like dehydratase; dehydratase 3489028..3489504 Polaromonas naphthalenivorans CJ2 4688719 YP_983504.1 CDS Pnap_3285 NC_008781.1 3489541 3491322 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2268 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3489541..3491322 Polaromonas naphthalenivorans CJ2 4688226 YP_983505.1 CDS Pnap_3286 NC_008781.1 3491392 3491709 D PFAM: protein of unknown function DUF485; KEGG: dar:Daro_4011 protein of unknown function DUF485; hypothetical protein 3491392..3491709 Polaromonas naphthalenivorans CJ2 4688079 YP_983506.1 CDS Pnap_3287 NC_008781.1 3491706 3493382 D member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 3491706..3493382 Polaromonas naphthalenivorans CJ2 4688566 YP_983507.1 CDS Pnap_3288 NC_008781.1 3494949 3495995 R TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: bma:BMA2691 phage portal protein, PBSX family; PBSX family phage portal protein complement(3494949..3495995) Polaromonas naphthalenivorans CJ2 4688548 YP_983508.1 CDS Pnap_3289 NC_008781.1 3495995 3497785 R PFAM: protein of unknown function DUF264; putative terminase ATPase subunit; KEGG: bps:BPSL0172 phage terminase, ATPase subunit; hypothetical protein complement(3495995..3497785) Polaromonas naphthalenivorans CJ2 4688549 YP_983509.1 CDS Pnap_3290 NC_008781.1 3497851 3498771 D PFAM: phage capsid scaffolding; KEGG: xom:XOO_1608 phage-related capsid scaffold protein; phage capsid scaffolding 3497851..3498771 Polaromonas naphthalenivorans CJ2 4688564 YP_983510.1 CDS Pnap_3291 NC_008781.1 3498821 3499828 D TIGRFAM: phage major capsid protein, P2 family; PFAM: phage major capsid protein, P2; KEGG: rso:RSc1937 probable bacteriophage protein; P2 family phage major capsid protein 3498821..3499828 Polaromonas naphthalenivorans CJ2 4688544 YP_983511.1 CDS Pnap_3292 NC_008781.1 3499834 3500616 D PFAM: phage small terminase subunit; KEGG: rso:RSc1936 probable bacteriophage protein; phage small terminase subunit 3499834..3500616 Polaromonas naphthalenivorans CJ2 4688580 YP_983512.1 CDS Pnap_3293 NC_008781.1 3500647 3501111 D PFAM: phage head completion; KEGG: bps:BPSL0168 phage head completion/stabilization protein; phage head completion 3500647..3501111 Polaromonas naphthalenivorans CJ2 4688532 YP_983513.1 CDS Pnap_3294 NC_008781.1 3501111 3501317 D PFAM: phage tail X family protein; KEGG: spt:SPA2577 putative phage tail protein; phage tail X family protein 3501111..3501317 Polaromonas naphthalenivorans CJ2 4688536 YP_983514.1 CDS Pnap_3295 NC_008781.1 3501321 3501539 D hypothetical protein 3501321..3501539 Polaromonas naphthalenivorans CJ2 4688577 YP_983515.1 CDS Pnap_3296 NC_008781.1 3501536 3502048 D KEGG: son:SO2973 prophage LambdaSo, lysozyme, putative; prophage LambdaSo, lysozyme 3501536..3502048 Polaromonas naphthalenivorans CJ2 4688572 YP_983516.1 CDS Pnap_3297 NC_008781.1 3502045 3502551 D KEGG: pfl:PFL_2019 phage protein, putative; phage protein 3502045..3502551 Polaromonas naphthalenivorans CJ2 4688740 YP_983517.1 CDS Pnap_3298 NC_008781.1 3502553 3502981 D PFAM: P2 phage tail completion R family protein; KEGG: rso:RSc1929 probable tail completion-like protein; P2 phage tail completion R family protein 3502553..3502981 Polaromonas naphthalenivorans CJ2 4688571 YP_983518.1 CDS Pnap_3299 NC_008781.1 3502985 3503452 D TIGRFAM: phage virion morphogenesis protein; PFAM: phage virion morphogenesis (putative tail completion) protein; KEGG: bps:BPSL0159 phage tail completion protein; phage virion morphogenesis protein 3502985..3503452 Polaromonas naphthalenivorans CJ2 4688565 YP_983519.1 CDS Pnap_3300 NC_008781.1 3503525 3504178 D PFAM: phage baseplate assembly protein V; KEGG: bps:BPSL0156 phage baseplate assembly protein; phage baseplate assembly protein V 3503525..3504178 Polaromonas naphthalenivorans CJ2 4688568 YP_983520.1 CDS Pnap_3301 NC_008781.1 3504175 3504546 D PFAM: GPW/gp25 family protein; KEGG: syf:Synpcc7942_0739 hypothetical protein; GPW/gp25 family protein 3504175..3504546 Polaromonas naphthalenivorans CJ2 4688561 YP_983521.1 CDS Pnap_3302 NC_008781.1 3504543 3505430 D PFAM: Baseplate J family protein; KEGG: sit:TM1040_1291 baseplate J-like protein; baseplate J family protein 3504543..3505430 Polaromonas naphthalenivorans CJ2 4688562 YP_983522.1 CDS Pnap_3303 NC_008781.1 3505423 3506100 D TIGRFAM: phage tail protein I; KEGG: sit:TM1040_1290 phage tail protein I; phage tail protein I 3505423..3506100 Polaromonas naphthalenivorans CJ2 4688741 YP_983523.1 CDS Pnap_3304 NC_008781.1 3506107 3507903 D hypothetical protein 3506107..3507903 Polaromonas naphthalenivorans CJ2 4688560 YP_983524.1 CDS Pnap_3305 NC_008781.1 3507908 3508645 D KEGG: bte:BTH_II1774 serine protease, subtilase family; hypothetical protein 3507908..3508645 Polaromonas naphthalenivorans CJ2 4688554 YP_983525.1 CDS Pnap_3306 NC_008781.1 3508784 3510235 D PFAM: phage Tail Collar domain protein; KEGG: sit:TM1040_1289 putative variable tail fibre protein; phage tail collar domain-containing protein 3508784..3510235 Polaromonas naphthalenivorans CJ2 4688550 YP_983526.1 CDS Pnap_3307 NC_008781.1 3510241 3510531 D KEGG: bbr:BB3608 putative tail fiber assembly protein; hypothetical protein 3510241..3510531 Polaromonas naphthalenivorans CJ2 4688552 YP_983527.1 CDS Pnap_3308 NC_008781.1 3510544 3511719 D PFAM: phage tail sheath protein; KEGG: yps:YPTB1841 putative bacteriophage P2 tail sheath protein; phage tail sheath protein 3510544..3511719 Polaromonas naphthalenivorans CJ2 4688553 YP_983528.1 CDS Pnap_3309 NC_008781.1 3511745 3512257 D PFAM: phage major tail tube protein; KEGG: xom:XOO_1589 phage-related tail protein; phage major tail tube protein 3511745..3512257 Polaromonas naphthalenivorans CJ2 4688546 YP_983529.1 CDS Pnap_3310 NC_008781.1 3512319 3512561 D KEGG: bxe:Bxe_A3076 hypothetical protein; hypothetical protein 3512319..3512561 Polaromonas naphthalenivorans CJ2 4688547 YP_983530.1 CDS Pnap_3311 NC_008781.1 3512593 3512949 D PFAM: phage tail E family protein; KEGG: rso:RSc1916 probable phage-related protein; phage tail E family protein 3512593..3512949 Polaromonas naphthalenivorans CJ2 4688545 YP_983531.1 CDS Pnap_3312 NC_008781.1 3512958 3513074 D PFAM: phage P2 GpE family protein; KEGG: csa:Csal_1376 phage P2 GpE; phage P2 GpE family protein 3512958..3513074 Polaromonas naphthalenivorans CJ2 4688541 YP_983532.1 CDS Pnap_3313 NC_008781.1 3513109 3515700 D TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: spt:SPA2558 hypothetical protein; TP901 family phage tail tape measure protein 3513109..3515700 Polaromonas naphthalenivorans CJ2 4688542 YP_983533.1 CDS Pnap_3314 NC_008781.1 3515721 3516170 D PFAM: phage P2 GpU family protein; KEGG: xom:XOO_1585 phage-related tail protein; phage P2 GpU family protein 3515721..3516170 Polaromonas naphthalenivorans CJ2 4688540 YP_983534.1 CDS Pnap_3315 NC_008781.1 3516176 3517210 D PFAM: phage late control D family protein; KEGG: xcc:XCC2994 phage-related tail protein; phage late control D family protein 3516176..3517210 Polaromonas naphthalenivorans CJ2 4688539 YP_983535.1 CDS Pnap_3316 NC_008781.1 3517327 3517707 R SMART: helix-turn-helix domain protein; KEGG: yps:YPTB1870 putative prophage transcriptional regulator; XRE family transcriptional regulator complement(3517327..3517707) Polaromonas naphthalenivorans CJ2 4688537 YP_983536.1 CDS Pnap_3317 NC_008781.1 3517738 3517989 D hypothetical protein 3517738..3517989 Polaromonas naphthalenivorans CJ2 4688535 YP_983537.1 CDS Pnap_3319 NC_008781.1 3518384 3518809 D PFAM: phage transcriptional activator, Ogr/delta; KEGG: bps:BPSL0138 hypothetical protein; phage transcriptional activator, Ogr/delta 3518384..3518809 Polaromonas naphthalenivorans CJ2 4688625 YP_983538.1 CDS Pnap_3320 NC_008781.1 3518806 3521694 D KEGG: rso:RSc1898 hypothetical phage-related protein; phage-like protein 3518806..3521694 Polaromonas naphthalenivorans CJ2 4688423 YP_983539.1 CDS Pnap_3321 NC_008781.1 3521742 3522446 D hypothetical protein 3521742..3522446 Polaromonas naphthalenivorans CJ2 4688531 YP_983540.1 CDS Pnap_3322 NC_008781.1 3522468 3523019 D KEGG: ecs:ECs2967 putative antirepressor protein; hypothetical protein 3522468..3523019 Polaromonas naphthalenivorans CJ2 4688530 YP_983541.1 CDS Pnap_3323 NC_008781.1 3523122 3523514 R KEGG: eli:ELI_07220 hypothetical protein; hypothetical protein complement(3523122..3523514) Polaromonas naphthalenivorans CJ2 4688402 YP_983542.1 CDS Pnap_3324 NC_008781.1 3523536 3523949 R hypothetical protein complement(3523536..3523949) Polaromonas naphthalenivorans CJ2 4688739 YP_983543.1 CDS Pnap_3325 NC_008781.1 3524305 3524925 D hypothetical protein 3524305..3524925 Polaromonas naphthalenivorans CJ2 4688557 YP_983544.1 CDS Pnap_3326 NC_008781.1 3524922 3525419 D hypothetical protein 3524922..3525419 Polaromonas naphthalenivorans CJ2 4688784 YP_983545.1 CDS Pnap_3327 NC_008781.1 3525416 3526450 D KEGG: bbr:BB1683 phage-related hypothetical protein; hypothetical protein 3525416..3526450 Polaromonas naphthalenivorans CJ2 4688828 YP_983546.1 CDS Pnap_3328 NC_008781.1 3526465 3527712 D KEGG: sde:Sde_3589 putative CheA signal transduction histidine kinases; hypothetical protein 3526465..3527712 Polaromonas naphthalenivorans CJ2 4688606 YP_983547.1 CDS Pnap_3329 NC_008781.1 3527712 3527978 D hypothetical protein 3527712..3527978 Polaromonas naphthalenivorans CJ2 4688795 YP_983548.1 CDS Pnap_3330 NC_008781.1 3528270 3528686 D hypothetical protein 3528270..3528686 Polaromonas naphthalenivorans CJ2 4688350 YP_983549.1 CDS Pnap_3331 NC_008781.1 3528683 3529627 D PFAM: phage Gp37Gp68 family protein; KEGG: bpm:BURPS1710b_1658 GP38; phage Gp37Gp68 family protein 3528683..3529627 Polaromonas naphthalenivorans CJ2 4688911 YP_983550.1 CDS Pnap_3332 NC_008781.1 3529624 3529881 D KEGG: reu:Reut_B3669 hypothetical protein; hypothetical protein 3529624..3529881 Polaromonas naphthalenivorans CJ2 4688940 YP_983551.1 CDS Pnap_3333 NC_008781.1 3530357 3530581 D PFAM: Prophage CP4-57 regulatory; KEGG: bte:BTH_II2006 prophage regulatory protein AlpA family protein; phage transcriptional regulator AlpA 3530357..3530581 Polaromonas naphthalenivorans CJ2 4688942 YP_983552.1 CDS Pnap_3334 NC_008781.1 3530589 3531785 R PFAM: phage integrase family protein; KEGG: pol:Bpro_0966 phage integrase; phage integrase family protein complement(3530589..3531785) Polaromonas naphthalenivorans CJ2 4688675 YP_983553.1 CDS Pnap_3335 NC_008781.1 3532055 3533389 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(3532055..3533389) Polaromonas naphthalenivorans CJ2 4689182 YP_983554.1 CDS Pnap_3336 NC_008781.1 3533439 3534383 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(3533439..3534383) Polaromonas naphthalenivorans CJ2 4689357 YP_983555.1 CDS ispH NC_008781.1 3534390 3535385 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(3534390..3535385) Polaromonas naphthalenivorans CJ2 4689151 YP_983556.1 CDS Pnap_3338 NC_008781.1 3535388 3535885 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_0950 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(3535388..3535885) Polaromonas naphthalenivorans CJ2 4689148 YP_983557.1 CDS radC NC_008781.1 3536089 3536763 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3536089..3536763 Polaromonas naphthalenivorans CJ2 4689149 YP_983558.1 CDS Pnap_3340 NC_008781.1 3536800 3537483 D PFAM: Smr protein/MutS2; KEGG: pol:Bpro_0947 Smr protein/MutS2; Smr protein/MutS2 3536800..3537483 Polaromonas naphthalenivorans CJ2 4689146 YP_983559.1 CDS Pnap_3341 NC_008781.1 3537567 3538394 R PFAM: regulatory protein, LuxR; KEGG: DNA-binding response regulator, LuxR family; response regulator receiver protein complement(3537567..3538394) Polaromonas naphthalenivorans CJ2 4689144 YP_983560.1 CDS Pnap_3342 NC_008781.1 3538518 3538748 D KEGG: rfr:Rfer_3961 hypothetical protein; hypothetical protein 3538518..3538748 Polaromonas naphthalenivorans CJ2 4689365 YP_983561.1 CDS Pnap_3343 NC_008781.1 3538798 3539535 R TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_1147 phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3538798..3539535) Polaromonas naphthalenivorans CJ2 4689166 YP_983562.1 CDS Pnap_3344 NC_008781.1 3539595 3540890 R KEGG: pol:Bpro_1146 allantoinase; allantoinase complement(3539595..3540890) Polaromonas naphthalenivorans CJ2 4689061 YP_983563.1 CDS pyrB NC_008781.1 3540931 3541893 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(3540931..3541893) Polaromonas naphthalenivorans CJ2 4689140 YP_983564.1 CDS Pnap_3346 NC_008781.1 3541921 3542439 R PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_1144 phosphoribosyltransferase; phosphoribosyltransferase complement(3541921..3542439) Polaromonas naphthalenivorans CJ2 4689043 YP_983565.1 CDS Pnap_3347 NC_008781.1 3542432 3542902 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(3542432..3542902) Polaromonas naphthalenivorans CJ2 4688895 YP_983566.1 CDS Pnap_3348 NC_008781.1 3542895 3543485 R PFAM: protein of unknown function DUF179; KEGG: pol:Bpro_1142 protein of unknown function DUF179; hypothetical protein complement(3542895..3543485) Polaromonas naphthalenivorans CJ2 4689181 YP_983567.1 CDS Pnap_3349 NC_008781.1 3543643 3545076 D PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: rfr:Rfer_1376 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase 3543643..3545076 Polaromonas naphthalenivorans CJ2 4689157 YP_983568.1 CDS Pnap_3350 NC_008781.1 3545135 3551047 R PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: pol:Bpro_1140 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(3545135..3551047) Polaromonas naphthalenivorans CJ2 4689495 YP_983569.1 CDS Pnap_3351 NC_008781.1 3551103 3553382 R PFAM: chemotaxis sensory transducer; KEGG: pol:Bpro_1139 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3551103..3553382) Polaromonas naphthalenivorans CJ2 4689490 YP_983570.1 CDS Pnap_3352 NC_008781.1 3553419 3553949 R KEGG: pol:Bpro_1138 CheW-like protein; putative CheW protein complement(3553419..3553949) Polaromonas naphthalenivorans CJ2 4689505 YP_983571.1 CDS Pnap_3353 NC_008781.1 3553971 3554336 R PFAM: response regulator receiver; KEGG: pol:Bpro_1137 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(3553971..3554336) Polaromonas naphthalenivorans CJ2 4689248 YP_983572.1 CDS Pnap_3354 NC_008781.1 3554336 3554779 R PFAM: response regulator receiver; KEGG: pol:Bpro_1136 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(3554336..3554779) Polaromonas naphthalenivorans CJ2 4689617 YP_983573.1 CDS Pnap_3355 NC_008781.1 3554815 3554988 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pol:Bpro_1135 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein complement(3554815..3554988) Polaromonas naphthalenivorans CJ2 4689278 YP_983574.1 CDS Pnap_3356 NC_008781.1 3555071 3556045 D PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: pol:Bpro_1134 putative phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase type-1 3555071..3556045 Polaromonas naphthalenivorans CJ2 4689624 YP_983575.1 CDS Pnap_3357 NC_008781.1 3556026 3557354 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3556026..3557354 Polaromonas naphthalenivorans CJ2 4689643 YP_983576.1 CDS purH NC_008781.1 3557518 3559116 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(3557518..3559116) Polaromonas naphthalenivorans CJ2 4690068 YP_983577.1 CDS Pnap_3359 NC_008781.1 3559172 3559408 R PFAM: helix-turn-helix, Fis-type; KEGG: pol:Bpro_1131 transcriptional regulator, fis family; Fis family transcriptional regulator complement(3559172..3559408) Polaromonas naphthalenivorans CJ2 4690105 YP_983578.1 CDS Pnap_3360 NC_008781.1 3559405 3560475 R TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_1130 dihydrouridine synthase TIM-barrel protein nifR3; nifR3 family TIM-barrel protein complement(3559405..3560475) Polaromonas naphthalenivorans CJ2 4690133 YP_983579.1 CDS Pnap_3361 NC_008781.1 3560620 3561102 D KEGG: pol:Bpro_1129 hypothetical protein; hypothetical protein 3560620..3561102 Polaromonas naphthalenivorans CJ2 4690181 YP_983580.1 CDS Pnap_3362 NC_008781.1 3561099 3561854 R PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_1128 RNA-binding S4; RNA-binding S4 domain-containing protein complement(3561099..3561854) Polaromonas naphthalenivorans CJ2 4690145 YP_983581.1 CDS Pnap_3363 NC_008781.1 3562008 3563099 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(3562008..3563099) Polaromonas naphthalenivorans CJ2 4690146 YP_983582.1 CDS Pnap_3364 NC_008781.1 3563277 3565067 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bja:blr2848 probable sulphate transport protein; sulfate transporter complement(3563277..3565067) Polaromonas naphthalenivorans CJ2 4690030 YP_983583.1 CDS Pnap_3365 NC_008781.1 3565067 3565975 R PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: pol:Bpro_1126 MOSC-like beta barrel; MOSC domain-containing protein complement(3565067..3565975) Polaromonas naphthalenivorans CJ2 4689401 YP_983584.1 CDS Pnap_3366 NC_008781.1 3566037 3567170 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: pol:Bpro_1125 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3566037..3567170 Polaromonas naphthalenivorans CJ2 4690050 YP_983585.1 CDS Pnap_3367 NC_008781.1 3567211 3567948 D KEGG: pol:Bpro_1124 putative thiol:disulphide interchange protein (periplasmic); putative thiol:disulfide interchange protein 3567211..3567948 Polaromonas naphthalenivorans CJ2 4689821 YP_983586.1 CDS Pnap_3368 NC_008781.1 3568092 3569894 D PFAM: peptidase M61 domain protein; KEGG: pol:Bpro_1123 peptidase M61; peptidase M61 domain-containing protein 3568092..3569894 Polaromonas naphthalenivorans CJ2 4689901 YP_983587.1 CDS Pnap_3369 NC_008781.1 3569980 3570768 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1122 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3569980..3570768 Polaromonas naphthalenivorans CJ2 4689916 YP_983588.1 CDS Pnap_3370 NC_008781.1 3571070 3571687 D TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: pol:Bpro_4730 channel protein, hemolysin III family; hemolysin III family channel protein 3571070..3571687 Polaromonas naphthalenivorans CJ2 4689437 YP_983589.1 CDS Pnap_3371 NC_008781.1 3571782 3572393 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: rso:RSc2905 putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase protein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3571782..3572393 Polaromonas naphthalenivorans CJ2 4689759 YP_983590.1 CDS Pnap_3372 NC_008781.1 3572510 3572947 D KEGG: pol:Bpro_1121 hypothetical protein; hypothetical protein 3572510..3572947 Polaromonas naphthalenivorans CJ2 4689696 YP_983591.1 CDS Pnap_3373 NC_008781.1 3573055 3574398 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3573055..3574398 Polaromonas naphthalenivorans CJ2 4689739 YP_983592.1 CDS Pnap_3374 NC_008781.1 3574388 3575851 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1119 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3574388..3575851 Polaromonas naphthalenivorans CJ2 4689800 YP_983593.1 CDS Pnap_3375 NC_008781.1 3575835 3576548 D KEGG: pol:Bpro_1118 hypothetical protein; hypothetical protein 3575835..3576548 Polaromonas naphthalenivorans CJ2 4689627 YP_983594.1 CDS Pnap_3376 NC_008781.1 3576545 3577933 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1117 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54 specific transcriptional regulator 3576545..3577933 Polaromonas naphthalenivorans CJ2 4689228 YP_983595.1 CDS mdoG NC_008781.1 3578136 3579719 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 3578136..3579719 Polaromonas naphthalenivorans CJ2 4689465 YP_983596.1 CDS Pnap_3378 NC_008781.1 3579791 3581686 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 3579791..3581686 Polaromonas naphthalenivorans CJ2 4689457 YP_983597.1 CDS Pnap_3379 NC_008781.1 3581797 3583155 R KEGG: pol:Bpro_1114 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(3581797..3583155) Polaromonas naphthalenivorans CJ2 4689398 YP_983598.1 CDS Pnap_3380 NC_008781.1 3583232 3584032 D PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_1113 cytochrome c assembly protein; cytochrome c assembly protein 3583232..3584032 Polaromonas naphthalenivorans CJ2 4689041 YP_983599.1 CDS Pnap_3381 NC_008781.1 3584029 3584274 D KEGG: pol:Bpro_1112 hypothetical protein; hypothetical protein 3584029..3584274 Polaromonas naphthalenivorans CJ2 4689064 YP_983600.1 CDS Pnap_3382 NC_008781.1 3584271 3585989 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1111 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3584271..3585989 Polaromonas naphthalenivorans CJ2 4689118 YP_983601.1 CDS Pnap_3383 NC_008781.1 3585996 3587423 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: pol:Bpro_1110 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54 specific transcriptional regulator 3585996..3587423 Polaromonas naphthalenivorans CJ2 4689984 YP_983602.1 CDS Pnap_3384 NC_008781.1 3587410 3588012 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pol:Bpro_1109 negative regulator of AmpC, AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase 3587410..3588012 Polaromonas naphthalenivorans CJ2 4689855 YP_983603.1 CDS Pnap_3385 NC_008781.1 3588421 3591324 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3588421..3591324 Polaromonas naphthalenivorans CJ2 4690010 YP_983604.1 CDS Pnap_3386 NC_008781.1 3591482 3592645 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 3591482..3592645 Polaromonas naphthalenivorans CJ2 4689029 YP_983605.1 CDS Pnap_3387 NC_008781.1 3592855 3593415 D KEGG: pol:Bpro_1105 histone protein; histone protein 3592855..3593415 Polaromonas naphthalenivorans CJ2 4688987 YP_983606.1 CDS Pnap_3388 NC_008781.1 3593544 3594467 R PFAM: PfkB domain protein; KEGG: pol:Bpro_1103 PfkB; ribokinase-like domain-containing protein complement(3593544..3594467) Polaromonas naphthalenivorans CJ2 4689035 YP_983607.1 CDS Pnap_3389 NC_008781.1 3594487 3595476 R TIGRFAM: MJ0042 family finger-like protein; KEGG: pol:Bpro_1102 zinc finger/thioredoxin putative; Zinc finger-domain-containing protein complement(3594487..3595476) Polaromonas naphthalenivorans CJ2 4689081 YP_983608.1 CDS prmA NC_008781.1 3595542 3596435 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(3595542..3596435) Polaromonas naphthalenivorans CJ2 4689604 YP_983609.1 CDS Pnap_3391 NC_008781.1 3596557 3597906 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_1100 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase complement(3596557..3597906) Polaromonas naphthalenivorans CJ2 4688954 YP_983610.1 CDS Pnap_3392 NC_008781.1 3597980 3598426 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pol:Bpro_1099 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(3597980..3598426) Polaromonas naphthalenivorans CJ2 4688882 YP_983611.1 CDS Pnap_3393 NC_008781.1 3598762 3599280 R PFAM: Redoxin domain protein; KEGG: pol:Bpro_1098 thioredoxin family protein, putative; redoxin domain-containing protein complement(3598762..3599280) Polaromonas naphthalenivorans CJ2 4688907 YP_983612.1 CDS Pnap_3394 NC_008781.1 3599299 3599895 R KEGG: pol:Bpro_1097 hypothetical protein; hypothetical protein complement(3599299..3599895) Polaromonas naphthalenivorans CJ2 4688982 YP_983613.1 CDS Pnap_3395 NC_008781.1 3600126 3601553 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1096 UDP-N-acetylmuramate; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 3600126..3601553 Polaromonas naphthalenivorans CJ2 4687713 YP_983614.1 CDS Pnap_3396 NC_008781.1 3601660 3602862 R KEGG: psb:Psyr_0912 DnaJ domain protein; DnaJ domain-containing protein complement(3601660..3602862) Polaromonas naphthalenivorans CJ2 4686490 YP_983615.1 CDS Pnap_3397 NC_008781.1 3602996 3603307 R KEGG: pol:Bpro_1095 hypothetical protein; hypothetical protein complement(3602996..3603307) Polaromonas naphthalenivorans CJ2 4688731 YP_983616.1 CDS Pnap_3398 NC_008781.1 3603412 3604533 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3603412..3604533) Polaromonas naphthalenivorans CJ2 4686280 YP_983617.1 CDS Pnap_3399 NC_008781.1 3604781 3606307 R PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pol:Bpro_1093 peptidase U62, modulator of DNA gyrase; C69 family peptidase complement(3604781..3606307) Polaromonas naphthalenivorans CJ2 4689577 YP_983618.1 CDS Pnap_3400 NC_008781.1 3606344 3607498 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pol:Bpro_1091 rod shape-determining protein RodA; rod shape-determining protein RodA complement(3606344..3607498) Polaromonas naphthalenivorans CJ2 4688262 YP_983619.1 CDS Pnap_3401 NC_008781.1 3607693 3608277 D PFAM: protein of unknown function UPF0227; KEGG: pol:Bpro_1090 protein of unknown function UPF0227; hypothetical protein 3607693..3608277 Polaromonas naphthalenivorans CJ2 4686877 YP_983620.1 CDS Pnap_3402 NC_008781.1 3608525 3609292 D PFAM: putative transposase, IS891/IS1136/IS1341 family; KEGG: noc:Noc_1587 transposase; IS891/IS1136/IS1341 family transposase 3608525..3609292 Polaromonas naphthalenivorans CJ2 4686706 YP_983621.1 CDS Pnap_3403 NC_008781.1 3609328 3610386 D PFAM: transposase, IS4 family protein; KEGG: lpf:lpl2868 hypothetical protein; transposase, IS4 family protein 3609328..3610386 Polaromonas naphthalenivorans CJ2 4686730 YP_983622.1 CDS Pnap_3404 NC_008781.1 3610407 3610697 D PFAM: transposase, IS605 OrfB; KEGG: noc:Noc_1587 transposase; transposase, IS605 OrfB 3610407..3610697 Polaromonas naphthalenivorans CJ2 4686789 YP_983623.1 CDS Pnap_3405 NC_008781.1 3610727 3612850 D PFAM: ribonuclease II; KEGG: pol:Bpro_1089 ribonuclease II; ribonuclease II 3610727..3612850 Polaromonas naphthalenivorans CJ2 4686809 YP_983624.1 CDS Pnap_3406 NC_008781.1 3612874 3613788 D TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like; TonB family protein 3612874..3613788 Polaromonas naphthalenivorans CJ2 4686900 YP_983625.1 CDS aroE NC_008781.1 3613839 3614699 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3613839..3614699 Polaromonas naphthalenivorans CJ2 4686945 YP_983626.1 CDS Pnap_3408 NC_008781.1 3614696 3615445 D TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51; KEGG: pol:Bpro_1086 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase 3614696..3615445 Polaromonas naphthalenivorans CJ2 4687529 YP_983627.1 CDS ruvC NC_008781.1 3615531 3616079 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3615531..3616079 Polaromonas naphthalenivorans CJ2 4687553 YP_983628.1 CDS Pnap_3410 NC_008781.1 3616093 3616269 R KEGG: pol:Bpro_1082 hypothetical protein; hypothetical protein complement(3616093..3616269) Polaromonas naphthalenivorans CJ2 4687610 YP_983629.1 CDS lpxC NC_008781.1 3616303 3617226 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(3616303..3617226) Polaromonas naphthalenivorans CJ2 4688267 YP_983630.1 CDS Pnap_3412 NC_008781.1 3617374 3618558 R TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: pol:Bpro_1080 cell division protein FtsZ; cell division protein FtsZ complement(3617374..3618558) Polaromonas naphthalenivorans CJ2 4688318 YP_983631.1 CDS Pnap_3413 NC_008781.1 3618700 3619929 R PFAM: cell division protein FtsA; KEGG: pol:Bpro_1079 cell division protein FtsA; cell division protein FtsA complement(3618700..3619929) Polaromonas naphthalenivorans CJ2 4686278 YP_983632.1 CDS Pnap_3414 NC_008781.1 3619934 3620725 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: pol:Bpro_1078 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein complement(3619934..3620725) Polaromonas naphthalenivorans CJ2 4688567 YP_983633.1 CDS ddl NC_008781.1 3620734 3621711 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(3620734..3621711) Polaromonas naphthalenivorans CJ2 4688839 YP_983634.1 CDS murC NC_008781.1 3621708 3623144 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(3621708..3623144) Polaromonas naphthalenivorans CJ2 4688998 YP_983635.1 CDS murG NC_008781.1 3623141 3624223 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(3623141..3624223) Polaromonas naphthalenivorans CJ2 4689673 YP_983636.1 CDS Pnap_3418 NC_008781.1 3624220 3625485 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: pol:Bpro_1074 cell cycle protein; cell division protein FtsW complement(3624220..3625485) Polaromonas naphthalenivorans CJ2 4689130 YP_983637.1 CDS Pnap_3419 NC_008781.1 3625482 3626993 R TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_3427 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(3625482..3626993) Polaromonas naphthalenivorans CJ2 4689472 YP_983638.1 CDS mraY NC_008781.1 3626990 3628168 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(3626990..3628168) Polaromonas naphthalenivorans CJ2 4689869 YP_983639.1 CDS Pnap_3421 NC_008781.1 3628158 3629558 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1071 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase complement(3628158..3629558) Polaromonas naphthalenivorans CJ2 4690185 YP_983640.1 CDS murE NC_008781.1 3629555 3631045 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(3629555..3631045) Polaromonas naphthalenivorans CJ2 4690049 YP_983641.1 CDS Pnap_3423 NC_008781.1 3631051 3632787 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_1069 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase complement(3631051..3632787) Polaromonas naphthalenivorans CJ2 4689295 YP_983642.1 CDS Pnap_3424 NC_008781.1 3632784 3633092 R PFAM: cell division protein FtsL; KEGG: pol:Bpro_1068 cell division protein, FtsL -like; cell division protein FtsL complement(3632784..3633092) Polaromonas naphthalenivorans CJ2 4689642 YP_983643.1 CDS mraW NC_008781.1 3633157 3634077 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pol:Bpro_1067 methyltransferase; S-adenosyl-methyltransferase MraW complement(3633157..3634077) Polaromonas naphthalenivorans CJ2 4689596 YP_983644.1 CDS Pnap_3426 NC_008781.1 3634084 3634536 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(3634084..3634536) Polaromonas naphthalenivorans CJ2 4689277 YP_983645.1 CDS Pnap_3427 NC_008781.1 3635118 3636920 R KEGG: pol:Bpro_1065 hypothetical protein; hypothetical protein complement(3635118..3636920) Polaromonas naphthalenivorans CJ2 4689532 YP_983646.1 CDS Pnap_3428 NC_008781.1 3636957 3637793 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: pol:Bpro_1064 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(3636957..3637793) Polaromonas naphthalenivorans CJ2 4689247 YP_983647.1 CDS Pnap_3429 NC_008781.1 3638066 3639118 R PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: pol:Bpro_1063 cobalamin synthesis protein, P47K; cobalamin synthesis protein, P47K complement(3638066..3639118) Polaromonas naphthalenivorans CJ2 4689235 YP_983648.1 CDS Pnap_3430 NC_008781.1 3639268 3639594 R hypothetical protein complement(3639268..3639594) Polaromonas naphthalenivorans CJ2 4689227 YP_983649.1 CDS Pnap_3431 NC_008781.1 3639774 3641252 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: pol:Bpro_2661 transcriptional regulator, GntR family; GntR family transcriptional regulator 3639774..3641252 Polaromonas naphthalenivorans CJ2 4689195 YP_983650.1 CDS Pnap_3432 NC_008781.1 3641276 3642460 R SMART: PUA domain containing protein; KEGG: pol:Bpro_1062 putative SAM-dependent methyltransferase; PUA domain-containing protein complement(3641276..3642460) Polaromonas naphthalenivorans CJ2 4689416 YP_983651.1 CDS Pnap_3433 NC_008781.1 3642518 3643555 R PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pol:Bpro_1060 phage integrase; phage integrase family protein complement(3642518..3643555) Polaromonas naphthalenivorans CJ2 4689170 YP_983652.1 CDS Pnap_3434 NC_008781.1 3643555 3644268 R PFAM: protein of unknown function DUF484; KEGG: pol:Bpro_1059 hypothetical protein; hypothetical protein complement(3643555..3644268) Polaromonas naphthalenivorans CJ2 4689138 YP_983653.1 CDS dapF NC_008781.1 3644328 3645215 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(3644328..3645215) Polaromonas naphthalenivorans CJ2 4689145 YP_983654.1 CDS Pnap_3436 NC_008781.1 3645300 3646241 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0844 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3645300..3646241) Polaromonas naphthalenivorans CJ2 4689152 YP_983655.1 CDS Pnap_3437 NC_008781.1 3646347 3647279 D PFAM: dihydrodipicolinate synthetase; KEGG: mta:Moth_0631 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 3646347..3647279 Polaromonas naphthalenivorans CJ2 4688652 YP_983656.1 CDS Pnap_3438 NC_008781.1 3647308 3648288 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4389 uncharacterized protein UPF0065; hypothetical protein 3647308..3648288 Polaromonas naphthalenivorans CJ2 4688683 YP_983657.1 CDS Pnap_3439 NC_008781.1 3648278 3648985 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: eca:ECA3767 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3648278..3648985 Polaromonas naphthalenivorans CJ2 4688642 YP_983658.1 CDS Pnap_3440 NC_008781.1 3649010 3650176 D PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rfr:Rfer_0843 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 3649010..3650176 Polaromonas naphthalenivorans CJ2 4688841 YP_983659.1 CDS Pnap_3441 NC_008781.1 3650287 3651921 D PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: pol:Bpro_1055 beta-lactamase-like; beta-lactamase domain-containing protein 3650287..3651921 Polaromonas naphthalenivorans CJ2 4688796 YP_983660.1 CDS Pnap_3442 NC_008781.1 3652048 3652905 D PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: pol:Bpro_1050 extracellular solute-binding protein, family 3; extracellular solute-binding protein 3652048..3652905 Polaromonas naphthalenivorans CJ2 4688533 YP_983661.1 CDS Pnap_3443 NC_008781.1 3652911 3653807 R PFAM: regulatory protein, LysR; KEGG: rfr:Rfer_3458 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3652911..3653807) Polaromonas naphthalenivorans CJ2 4688433 YP_983662.1 CDS Pnap_3444 NC_008781.1 3653971 3654510 D TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rfr:Rfer_3459 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 3653971..3654510 Polaromonas naphthalenivorans CJ2 4688570 YP_983663.1 CDS Pnap_3445 NC_008781.1 3654925 3655842 D KEGG: rfr:Rfer_3460 cysteine synthases; TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase A 3654925..3655842 Polaromonas naphthalenivorans CJ2 4689399 YP_983664.1 CDS Pnap_3446 NC_008781.1 3655894 3657630 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_1049 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3655894..3657630 Polaromonas naphthalenivorans CJ2 4688585 YP_983665.1 CDS Pnap_3447 NC_008781.1 3657765 3658604 D KEGG: pol:Bpro_1033 hypothetical protein; hypothetical protein 3657765..3658604 Polaromonas naphthalenivorans CJ2 4688574 YP_983666.1 CDS Pnap_3448 NC_008781.1 3658760 3659635 R putative metalloprotease; heat shock protein HtpX complement(3658760..3659635) Polaromonas naphthalenivorans CJ2 4688579 YP_983667.1 CDS Pnap_3449 NC_008781.1 3659810 3660484 R KEGG: pol:Bpro_1031 putative transmembrane protein; hypothetical protein complement(3659810..3660484) Polaromonas naphthalenivorans CJ2 4688576 YP_983668.1 CDS Pnap_3450 NC_008781.1 3660553 3661680 R KEGG: pol:Bpro_4967 hypothetical protein; hypothetical protein complement(3660553..3661680) Polaromonas naphthalenivorans CJ2 4687766 YP_983669.1 CDS Pnap_3451 NC_008781.1 3661677 3662744 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(3661677..3662744) Polaromonas naphthalenivorans CJ2 4688175 YP_983670.1 CDS Pnap_3452 NC_008781.1 3662871 3663410 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rme:Rmet_1148 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 3662871..3663410 Polaromonas naphthalenivorans CJ2 4688020 YP_983671.1 CDS Pnap_3453 NC_008781.1 3663407 3664705 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbr:BB2309 putative membrane permease; TRAP dicarboxylate transporter subunit DctM 3663407..3664705 Polaromonas naphthalenivorans CJ2 4687716 YP_983672.1 CDS Pnap_3454 NC_008781.1 3664741 3665769 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rme:Rmet_1150 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 3664741..3665769 Polaromonas naphthalenivorans CJ2 4687715 YP_983673.1 CDS Pnap_3455 NC_008781.1 3665835 3666572 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3901 ABC transporter related; ABC transporter-like protein complement(3665835..3666572) Polaromonas naphthalenivorans CJ2 4687457 YP_983674.1 CDS Pnap_3456 NC_008781.1 3666630 3667298 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3902 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit complement(3666630..3667298) Polaromonas naphthalenivorans CJ2 4687481 YP_983675.1 CDS Pnap_3457 NC_008781.1 3667300 3667965 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3903 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit complement(3667300..3667965) Polaromonas naphthalenivorans CJ2 4687370 YP_983676.1 CDS Pnap_3458 NC_008781.1 3668131 3669030 R PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_3904 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(3668131..3669030) Polaromonas naphthalenivorans CJ2 4687112 YP_983677.1 CDS Pnap_3459 NC_008781.1 3669472 3670449 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3905 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3669472..3670449) Polaromonas naphthalenivorans CJ2 4687108 YP_983678.1 CDS Pnap_3460 NC_008781.1 3670569 3672434 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3906 ABC transporter related; ABC transporter-like protein complement(3670569..3672434) Polaromonas naphthalenivorans CJ2 4687125 YP_983679.1 CDS Pnap_3461 NC_008781.1 3672511 3672897 D PFAM: regulatory protein, MerR; KEGG: pfu:PF1985 hypothetical protein; regulatory protein MerR 3672511..3672897 Polaromonas naphthalenivorans CJ2 4687113 YP_983680.1 CDS Pnap_3462 NC_008781.1 3672894 3674261 D hypothetical protein 3672894..3674261 Polaromonas naphthalenivorans CJ2 4687149 YP_983681.1 CDS Pnap_3463 NC_008781.1 3674299 3674766 D PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3907 thioesterase superfamily; thioesterase superfamily protein 3674299..3674766 Polaromonas naphthalenivorans CJ2 4686668 YP_983682.1 CDS Pnap_3464 NC_008781.1 3674875 3675405 D PFAM: MgtC/SapB transporter; KEGG: pfo:Pfl_2532 MgtC/SapB transporter; MgtC/SapB transporter 3674875..3675405 Polaromonas naphthalenivorans CJ2 4687157 YP_983683.1 CDS Pnap_3465 NC_008781.1 3675439 3675882 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pol:Bpro_3909 hemerythrin HHE cation binding region; hemerythrin HHE cation-binding domain-containing protein complement(3675439..3675882) Polaromonas naphthalenivorans CJ2 4686240 YP_983684.1 CDS Pnap_3466 NC_008781.1 3676083 3677039 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: pol:Bpro_3910 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3676083..3677039 Polaromonas naphthalenivorans CJ2 4686215 YP_983685.1 CDS Pnap_3467 NC_008781.1 3677079 3677774 D PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_3912 protein of unknown function DUF1099; glutathione S-transferase domain-containing protein 3677079..3677774 Polaromonas naphthalenivorans CJ2 4686152 YP_983686.1 CDS Pnap_3468 NC_008781.1 3677771 3679045 D PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: pol:Bpro_3914 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3677771..3679045 Polaromonas naphthalenivorans CJ2 4686501 YP_983687.1 CDS Pnap_3469 NC_008781.1 3679050 3679616 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3919 phenylacetic acid degradation-related protein; hypothetical protein complement(3679050..3679616) Polaromonas naphthalenivorans CJ2 4686471 YP_983688.1 CDS Pnap_3470 NC_008781.1 3679661 3680185 R TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin; phasin family protein complement(3679661..3680185) Polaromonas naphthalenivorans CJ2 4686412 YP_983689.1 CDS Pnap_3471 NC_008781.1 3680429 3681844 D PFAM: phospholipase D/Transphosphatidylase; KEGG: tcx:Tcr_0934 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 3680429..3681844 Polaromonas naphthalenivorans CJ2 4686359 YP_983690.1 CDS Pnap_3472 NC_008781.1 3682073 3683731 D TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dar:Daro_1762 L-lactate permease; L-lactate transport 3682073..3683731 Polaromonas naphthalenivorans CJ2 4686263 YP_983691.1 CDS Pnap_3473 NC_008781.1 3683922 3684707 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3683922..3684707) Polaromonas naphthalenivorans CJ2 4687132 YP_983692.1 CDS Pnap_3474 NC_008781.1 3684748 3685947 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3684748..3685947) Polaromonas naphthalenivorans CJ2 4687484 YP_983693.1 CDS Pnap_3475 NC_008781.1 3685970 3686491 R KEGG: pol:Bpro_3955 hypothetical protein; hypothetical protein complement(3685970..3686491) Polaromonas naphthalenivorans CJ2 4688613 YP_983694.1 CDS Pnap_3476 NC_008781.1 3686493 3688925 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_3956 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase complement(3686493..3688925) Polaromonas naphthalenivorans CJ2 4689156 YP_983695.1 CDS Pnap_3477 NC_008781.1 3688965 3690761 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3957 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(3688965..3690761) Polaromonas naphthalenivorans CJ2 4689687 YP_983696.1 CDS Pnap_3478 NC_008781.1 3690787 3691530 R PFAM: regulatory protein, TetR; KEGG: pol:Bpro_3958 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3690787..3691530) Polaromonas naphthalenivorans CJ2 4688405 YP_983697.1 CDS Pnap_3479 NC_008781.1 3691760 3692680 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(3691760..3692680) Polaromonas naphthalenivorans CJ2 4687540 YP_983698.1 CDS Pnap_3480 NC_008781.1 3692830 3694797 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rme:Rmet_2723 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD complement(3692830..3694797) Polaromonas naphthalenivorans CJ2 4688555 YP_983699.1 CDS Pnap_3481 NC_008781.1 3694929 3695489 R PFAM: sugar transferase; KEGG: rfr:Rfer_1263 sugar transferase; sugar transferase complement(3694929..3695489) Polaromonas naphthalenivorans CJ2 4688754 YP_983700.1 CDS Pnap_3482 NC_008781.1 3695486 3696433 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3695486..3696433) Polaromonas naphthalenivorans CJ2 4688551 YP_983701.1 CDS Pnap_3483 NC_008781.1 3696603 3697760 R PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_2727 glycosyl transferase, group 1; group 1 glycosyl transferase complement(3696603..3697760) Polaromonas naphthalenivorans CJ2 4687727 YP_983702.1 CDS Pnap_3484 NC_008781.1 3697865 3698845 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: noc:Noc_2167 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3697865..3698845) Polaromonas naphthalenivorans CJ2 4688558 YP_983703.1 CDS Pnap_3485 NC_008781.1 3698864 3699796 R PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2174 glycosyl transferase, family 2; glycosyl transferase family protein complement(3698864..3699796) Polaromonas naphthalenivorans CJ2 4688593 YP_983704.1 CDS Pnap_3486 NC_008781.1 3699798 3701060 R KEGG: gme:Gmet_2175 hypothetical protein; hypothetical protein complement(3699798..3701060) Polaromonas naphthalenivorans CJ2 4689023 YP_983705.1 CDS Pnap_3487 NC_008781.1 3701180 3702454 R PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: dar:Daro_1271 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(3701180..3702454) Polaromonas naphthalenivorans CJ2 4688617 YP_983706.1 CDS Pnap_3488 NC_008781.1 3702465 3703010 R KEGG: eba:ebA2275 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3702465..3703010) Polaromonas naphthalenivorans CJ2 4689141 YP_983707.1 CDS Pnap_3489 NC_008781.1 3703007 3703894 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4018 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(3703007..3703894) Polaromonas naphthalenivorans CJ2 4689150 YP_983708.1 CDS Pnap_3490 NC_008781.1 3703919 3704809 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(3703919..3704809) Polaromonas naphthalenivorans CJ2 4688838 YP_983709.1 CDS Pnap_3491 NC_008781.1 3704806 3705870 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4022 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(3704806..3705870) Polaromonas naphthalenivorans CJ2 4688559 YP_983710.1 CDS Pnap_3492 NC_008781.1 3705956 3706807 R PFAM: lipopolysaccharide biosynthesis; KEGG: rfr:Rfer_1234 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein complement(3705956..3706807) Polaromonas naphthalenivorans CJ2 4688840 YP_983711.1 CDS Pnap_3493 NC_008781.1 3707218 3707559 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rme:Rmet_3677 histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 3707218..3707559 Polaromonas naphthalenivorans CJ2 4688649 YP_983712.1 CDS Pnap_3494 NC_008781.1 3707607 3709601 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KR; KEGG: pol:Bpro_4023 male sterility-like; short chain dehydrogenase complement(3707607..3709601) Polaromonas naphthalenivorans CJ2 4688673 YP_983713.1 CDS Pnap_3495 NC_008781.1 3709834 3710418 D TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated; poly(hydroxyalkanoate) granule-associated protein 3709834..3710418 Polaromonas naphthalenivorans CJ2 4688742 YP_983714.1 CDS Pnap_3496 NC_008781.1 3710603 3711274 D PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4025 transcriptional regulator, TetR family; TetR family transcriptional regulator 3710603..3711274 Polaromonas naphthalenivorans CJ2 4688569 YP_983715.1 CDS Pnap_3497 NC_008781.1 3711299 3712105 D KEGG: pol:Bpro_4026 hypothetical protein; hypothetical protein 3711299..3712105 Polaromonas naphthalenivorans CJ2 4688856 YP_983716.1 CDS Pnap_3498 NC_008781.1 3712198 3713748 R PFAM: glycosyl transferase, family 39; KEGG: pol:Bpro_4028 glycosyl transferase, family 39; glycosyl transferase family protein complement(3712198..3713748) Polaromonas naphthalenivorans CJ2 4688582 YP_983717.1 CDS Pnap_3499 NC_008781.1 3713851 3714810 R PFAM: conserved hypothetical protein 374; KEGG: pol:Bpro_4029 conserved hypothetical protein 374; hypothetical protein complement(3713851..3714810) Polaromonas naphthalenivorans CJ2 4689154 YP_983718.1 CDS Pnap_3500 NC_008781.1 3714807 3715718 R PFAM: UbiA prenyltransferase; KEGG: pol:Bpro_4030 UbiA prenyltransferase; UbiA prenyltransferase complement(3714807..3715718) Polaromonas naphthalenivorans CJ2 4688952 YP_983719.1 CDS Pnap_3501 NC_008781.1 3715798 3716922 D KEGG: pol:Bpro_4033 putative zinc protease protein; putative zinc protease 3715798..3716922 Polaromonas naphthalenivorans CJ2 4689147 YP_983720.1 CDS Pnap_3502 NC_008781.1 3716927 3719350 R KEGG: pol:Bpro_4197 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(3716927..3719350) Polaromonas naphthalenivorans CJ2 4687838 YP_983721.1 CDS Pnap_3503 NC_008781.1 3719646 3719978 D TIGRFAM: putative polyhydroxyalkanoic acid system protein; KEGG: rfr:Rfer_3533 hypothetical protein; putative polyhydroxyalkanoic acid system protein 3719646..3719978 Polaromonas naphthalenivorans CJ2 4687973 YP_983722.1 CDS Pnap_3504 NC_008781.1 3719998 3720933 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4035 transcriptional regulator, LysR family; LysR family transcriptional regulator 3719998..3720933 Polaromonas naphthalenivorans CJ2 4688584 YP_983723.1 CDS Pnap_3505 NC_008781.1 3720967 3722202 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4036 L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 3720967..3722202 Polaromonas naphthalenivorans CJ2 4688167 YP_983724.1 CDS Pnap_3506 NC_008781.1 3722199 3723146 D PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4037 pyruvate carboxyltransferase; pyruvate carboxyltransferase 3722199..3723146 Polaromonas naphthalenivorans CJ2 4688718 YP_983725.1 CDS Pnap_3507 NC_008781.1 3723143 3723535 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_4038 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3723143..3723535 Polaromonas naphthalenivorans CJ2 4687719 YP_983726.1 CDS Pnap_3508 NC_008781.1 3723566 3724540 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4039 uncharacterized protein UPF0065; hypothetical protein 3723566..3724540 Polaromonas naphthalenivorans CJ2 4688013 YP_983727.1 CDS Pnap_3509 NC_008781.1 3724629 3724883 R PFAM: acyl-coA-binding protein, ACBP; KEGG: pol:Bpro_4041 acyl-coA-binding protein, ACBP; acyl-CoA-binding protein complement(3724629..3724883) Polaromonas naphthalenivorans CJ2 4687755 YP_983728.1 CDS Pnap_3510 NC_008781.1 3725024 3726592 D PFAM: protein of unknown function UPF0089; KEGG: pol:Bpro_4042 protein of unknown function UPF0089; hypothetical protein 3725024..3726592 Polaromonas naphthalenivorans CJ2 4689142 YP_983729.1 CDS Pnap_3511 NC_008781.1 3726664 3727431 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(3726664..3727431) Polaromonas naphthalenivorans CJ2 4688039 YP_983730.1 CDS Pnap_3512 NC_008781.1 3727528 3728196 R PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4045 transcriptional regulator, LuxR family; regulatory protein LuxR complement(3727528..3728196) Polaromonas naphthalenivorans CJ2 4687879 YP_983731.1 CDS Pnap_3513 NC_008781.1 3728283 3729560 D PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: pol:Bpro_4046 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3728283..3729560 Polaromonas naphthalenivorans CJ2 4689393 YP_983732.1 CDS Pnap_3514 NC_008781.1 3729570 3730598 D KEGG: pol:Bpro_4047 response regulator receiver domain protein (CheY-like); response regulator receiver protein 3729570..3730598 Polaromonas naphthalenivorans CJ2 4689443 YP_983733.1 CDS Pnap_3515 NC_008781.1 3730601 3731848 R PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_4048 glycine C-acetyltransferase; hypothetical protein complement(3730601..3731848) Polaromonas naphthalenivorans CJ2 4689172 YP_983734.1 CDS Pnap_3516 NC_008781.1 3731994 3732434 R SMART: Rhodanese domain protein; KEGG: pol:Bpro_4049 rhodanese-like; rhodanese domain-containing protein complement(3731994..3732434) Polaromonas naphthalenivorans CJ2 4687944 YP_983735.1 CDS Pnap_3517 NC_008781.1 3732622 3733533 D PFAM: protein of unknown function DUF344; KEGG: pol:Bpro_4050 protein of unknown function DUF344; hypothetical protein 3732622..3733533 Polaromonas naphthalenivorans CJ2 4687497 YP_983736.1 CDS Pnap_3518 NC_008781.1 3733659 3734381 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3709 ABC branched chain amino acid family transporter, ATPase subunit; ABC transporter-like protein complement(3733659..3734381) Polaromonas naphthalenivorans CJ2 4687360 YP_983737.1 CDS Pnap_3519 NC_008781.1 3734397 3736328 R PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3708 ABC branched chain amino acid family transporter, fused ATPase and inner membrane subunit; ABC transporter-like protein complement(3734397..3736328) Polaromonas naphthalenivorans CJ2 4689478 YP_983738.1 CDS Pnap_3520 NC_008781.1 3736332 3737207 R PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A3707 ABC branched chain amino acid family transporter, inner membrane subunit; inner-membrane translocator complement(3736332..3737207) Polaromonas naphthalenivorans CJ2 4687455 YP_983739.1 CDS Pnap_3521 NC_008781.1 3737294 3738496 R PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A3706 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; extracellular ligand-binding receptor complement(3737294..3738496) Polaromonas naphthalenivorans CJ2 4686210 YP_983740.1 CDS Pnap_3522 NC_008781.1 3738758 3740191 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; Cache, type 2 domain protein; KEGG: rso:RSc0021 probable transmembrane sensor histidine kinase transcription regulator protein; integral membrane sensor signal transduction histidine kinase 3738758..3740191 Polaromonas naphthalenivorans CJ2 4687463 YP_983741.1 CDS Pnap_3523 NC_008781.1 3740157 3740831 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bcn:Bcen_5187 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3740157..3740831 Polaromonas naphthalenivorans CJ2 4686056 YP_983742.1 CDS Pnap_3524 NC_008781.1 3741055 3744348 D KEGG: pol:Bpro_4054 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit 3741055..3744348 Polaromonas naphthalenivorans CJ2 4686346 YP_983743.1 CDS Pnap_3525 NC_008781.1 3744469 3744630 R KEGG: rfr:Rfer_0521 hypothetical protein; hypothetical protein complement(3744469..3744630) Polaromonas naphthalenivorans CJ2 4686382 YP_983744.1 CDS Pnap_3526 NC_008781.1 3744722 3745837 R PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4232 uncharacterized protein UPF0065; hypothetical protein complement(3744722..3745837) Polaromonas naphthalenivorans CJ2 4690107 YP_983745.1 CDS Pnap_3527 NC_008781.1 3746028 3746801 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4075 ABC transporter related; ABC transporter-like protein 3746028..3746801 Polaromonas naphthalenivorans CJ2 4689629 YP_983746.1 CDS Pnap_3528 NC_008781.1 3746804 3747508 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4076 ABC transporter related; ABC transporter-like protein 3746804..3747508 Polaromonas naphthalenivorans CJ2 4688100 YP_983747.1 CDS Pnap_3529 NC_008781.1 3747586 3748779 D KEGG: rfr:Rfer_1077 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3747586..3748779 Polaromonas naphthalenivorans CJ2 4688055 YP_983748.1 CDS Pnap_3530 NC_008781.1 3748864 3749748 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_4078 inner-membrane translocator; inner-membrane translocator 3748864..3749748 Polaromonas naphthalenivorans CJ2 4688762 YP_983749.1 CDS Pnap_3531 NC_008781.1 3749753 3750775 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_4079 inner-membrane translocator; inner-membrane translocator 3749753..3750775 Polaromonas naphthalenivorans CJ2 4689186 YP_983750.1 CDS Pnap_3532 NC_008781.1 3751272 3752324 D PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type; porin 3751272..3752324 Polaromonas naphthalenivorans CJ2 4686178 YP_983751.1 CDS Pnap_3533 NC_008781.1 3752502 3753269 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4072 ABC transporter ATP-binding protein; ABC transporter-like protein complement(3752502..3753269) Polaromonas naphthalenivorans CJ2 4688660 YP_983752.1 CDS Pnap_3534 NC_008781.1 3753282 3754169 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4073 ABC transporter ATP binding protein; ABC transporter-like protein complement(3753282..3754169) Polaromonas naphthalenivorans CJ2 4687905 YP_983753.1 CDS Pnap_3535 NC_008781.1 3754181 3755083 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dipeptide ABC transporter, permease protein DppC, putative; binding-protein-dependent transport system inner membrane protein complement(3754181..3755083) Polaromonas naphthalenivorans CJ2 4687327 YP_983754.1 CDS Pnap_3536 NC_008781.1 3755080 3756147 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4075 ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein complement(3755080..3756147) Polaromonas naphthalenivorans CJ2 4687489 YP_983755.1 CDS Pnap_3537 NC_008781.1 3756188 3757858 R PFAM: extracellular solute-binding protein, family 5; KEGG: eca:ECA4076 ABC transporter, substrate binding protein; extracellular solute-binding protein complement(3756188..3757858) Polaromonas naphthalenivorans CJ2 4689396 YP_983756.1 CDS Pnap_3538 NC_008781.1 3757843 3759045 R PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: eca:ECA4077 putative mandelate racemase / muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein complement(3757843..3759045) Polaromonas naphthalenivorans CJ2 4686911 YP_983757.1 CDS Pnap_3539 NC_008781.1 3759311 3760093 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bcn:Bcen_0685 GntR-like; regulatory protein GntR 3759311..3760093 Polaromonas naphthalenivorans CJ2 4690224 YP_983758.1 CDS Pnap_3540 NC_008781.1 3760209 3760844 R KEGG: pfo:Pfl_1042 hypothetical protein; hypothetical protein complement(3760209..3760844) Polaromonas naphthalenivorans CJ2 4690120 YP_983759.1 CDS Pnap_3541 NC_008781.1 3760847 3762127 R KEGG: pfo:Pfl_1041 ATPase-like; ATPase-like protein complement(3760847..3762127) Polaromonas naphthalenivorans CJ2 4690215 YP_983760.1 CDS Pnap_3542 NC_008781.1 3762205 3763608 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(3762205..3763608) Polaromonas naphthalenivorans CJ2 4688122 YP_983761.1 CDS Pnap_3543 NC_008781.1 3763736 3764557 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: bbr:BB3846 hypothetical protein; PA-phosphatase-like phosphoesterase 3763736..3764557 Polaromonas naphthalenivorans CJ2 4689976 YP_983762.1 CDS Pnap_3544 NC_008781.1 3764633 3766000 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: pol:Bpro_0643 pyridine nucleotide-disulphide oxidoreductase dimerisation region; pyridine nucleotide-disulfide oxidoreductase dimerisation region 3764633..3766000 Polaromonas naphthalenivorans CJ2 4686514 YP_983763.1 CDS Pnap_3545 NC_008781.1 3766053 3767573 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 3766053..3767573 Polaromonas naphthalenivorans CJ2 4690212 YP_983764.1 CDS Pnap_3547 NC_008781.1 3768484 3769917 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_3184 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 3768484..3769917 Polaromonas naphthalenivorans CJ2 4689382 YP_983765.1 CDS Pnap_3548 NC_008781.1 3769971 3771299 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3185 secretion protein HlyD; RND family efflux transporter MFP subunit 3769971..3771299 Polaromonas naphthalenivorans CJ2 4689524 YP_983766.1 CDS Pnap_3549 NC_008781.1 3771296 3772063 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3186 ABC transporter related; ABC transporter-like protein 3771296..3772063 Polaromonas naphthalenivorans CJ2 4686537 YP_983767.1 CDS Pnap_3550 NC_008781.1 3772063 3773271 D PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3187 protein of unknown function DUF214; hypothetical protein 3772063..3773271 Polaromonas naphthalenivorans CJ2 4689428 YP_983768.1 CDS Pnap_3551 NC_008781.1 3773362 3773556 R hypothetical protein complement(3773362..3773556) Polaromonas naphthalenivorans CJ2 4690056 YP_983769.1 CDS Pnap_3552 NC_008781.1 3773602 3774246 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: tbd:Tbd_2707 hemolysin-like protein; hemolysin III family channel protein complement(3773602..3774246) Polaromonas naphthalenivorans CJ2 4688705 YP_983770.1 CDS Pnap_3553 NC_008781.1 3774351 3774656 D hypothetical protein 3774351..3774656 Polaromonas naphthalenivorans CJ2 4690027 YP_983771.1 CDS Pnap_3554 NC_008781.1 3774687 3774983 D hypothetical protein 3774687..3774983 Polaromonas naphthalenivorans CJ2 4689004 YP_983772.1 CDS Pnap_3555 NC_008781.1 3775123 3775515 D hypothetical protein 3775123..3775515 Polaromonas naphthalenivorans CJ2 4686097 YP_983773.1 CDS Pnap_3556 NC_008781.1 3775783 3777276 D PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5089 transposase, IS4; transposase, IS4 family protein 3775783..3777276 Polaromonas naphthalenivorans CJ2 4689018 YP_983774.1 CDS Pnap_3557 NC_008781.1 3777739 3778959 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(3777739..3778959) Polaromonas naphthalenivorans CJ2 4688901 YP_983775.1 CDS Pnap_3558 NC_008781.1 3779080 3780447 R PFAM: filamentation induced by cAMP protein Fic; KEGG: plu:plu0744 hypothetical protein; filamentation induced by cAMP protein fic complement(3779080..3780447) Polaromonas naphthalenivorans CJ2 4690131 YP_983776.1 CDS Pnap_3559 NC_008781.1 3780600 3781673 R KEGG: eba:ebA3407 predicted TRAP-type uncharacterized transport system protein, periplasmic component; TRAP-type transport system periplasmic protein complement(3780600..3781673) Polaromonas naphthalenivorans CJ2 4688686 YP_983777.1 CDS Pnap_3560 NC_008781.1 3781675 3782457 R SMART: zinc finger, RanBP2-type; KEGG: eba:ebA3408 hypothetical protein; CDGSH-type zinc finger protein complement(3781675..3782457) Polaromonas naphthalenivorans CJ2 4688910 YP_983778.1 CDS Pnap_3561 NC_008781.1 3782983 3783696 D PFAM: protein of unknown function DUF28; KEGG: pol:Bpro_2928 protein of unknown function DUF28; hypothetical protein 3782983..3783696 Polaromonas naphthalenivorans CJ2 4688210 YP_983779.1 CDS Pnap_3562 NC_008781.1 3783720 3784322 D catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis; D-alanyl-D-alanine dipeptidase 3783720..3784322 Polaromonas naphthalenivorans CJ2 4687342 YP_983780.1 CDS Pnap_3563 NC_008781.1 3784446 3785048 D KEGG: rfr:Rfer_0376 hypothetical protein; hypothetical protein 3784446..3785048 Polaromonas naphthalenivorans CJ2 4686666 YP_983781.1 CDS Pnap_3564 NC_008781.1 3785185 3785418 D KEGG: reu:Reut_A1356 hypothetical protein; hypothetical protein 3785185..3785418 Polaromonas naphthalenivorans CJ2 4689389 YP_983782.1 CDS Pnap_3565 NC_008781.1 3785458 3788070 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_0492 ATPase, E1-E2 type; HAD superfamily P-type ATPase 3785458..3788070 Polaromonas naphthalenivorans CJ2 4689022 YP_983783.1 CDS Pnap_3566 NC_008781.1 3788204 3789949 D PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase family protein; poly-beta-hydroxybutyrate polymerase domain-containing protein 3788204..3789949 Polaromonas naphthalenivorans CJ2 4686738 YP_983784.1 CDS Pnap_3567 NC_008781.1 3790004 3790807 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA4568 putative enoyl-acyl carrier protein reductase; short-chain dehydrogenase/reductase SDR 3790004..3790807 Polaromonas naphthalenivorans CJ2 4690175 YP_983785.1 CDS Pnap_3568 NC_008781.1 3790776 3792278 D PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: sil:SPO0115 MaoC family protein/phosphate acetyl/butaryl transferase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase 3790776..3792278 Polaromonas naphthalenivorans CJ2 4686083 YP_983786.1 CDS Pnap_3569 NC_008781.1 3792275 3793510 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: reu:Reut_A1203 acetate kinase; acetate kinase 3792275..3793510 Polaromonas naphthalenivorans CJ2 4688063 YP_983787.1 CDS Pnap_3570 NC_008781.1 3793633 3794739 R PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_0636 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(3793633..3794739) Polaromonas naphthalenivorans CJ2 4690138 YP_983788.1 CDS purT NC_008781.1 3794748 3795953 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(3794748..3795953) Polaromonas naphthalenivorans CJ2 4686296 YP_983789.1 CDS Pnap_3572 NC_008781.1 3796152 3796742 D KEGG: pol:Bpro_1655 hypothetical protein; hypothetical protein 3796152..3796742 Polaromonas naphthalenivorans CJ2 4686089 YP_983790.1 CDS Pnap_3573 NC_008781.1 3796823 3797764 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0633 ABC transporter related; ABC transporter-like protein 3796823..3797764 Polaromonas naphthalenivorans CJ2 4690216 YP_983791.1 CDS Pnap_3574 NC_008781.1 3797761 3798615 D TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0632 ABC-2 type transporter, NodJ family; ABC transporter 3797761..3798615 Polaromonas naphthalenivorans CJ2 4686644 YP_983792.1 CDS Pnap_3575 NC_008781.1 3798759 3799784 D PFAM: CheB methylesterase; KEGG: eba:ebA2148 chemotaxis response regulator containing a CheY-like receiver domain and a protein-glutamate methylesterase; CheB methylesterase 3798759..3799784 Polaromonas naphthalenivorans CJ2 4689245 YP_983793.1 CDS Pnap_3576 NC_008781.1 3799830 3800501 R KEGG: sme:SMc01549 hypothetical protein; hypothetical protein complement(3799830..3800501) Polaromonas naphthalenivorans CJ2 4687753 YP_983794.1 CDS Pnap_3577 NC_008781.1 3800883 3802121 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0150 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3800883..3802121 Polaromonas naphthalenivorans CJ2 4688743 YP_983795.1 CDS Pnap_3578 NC_008781.1 3802311 3802889 R PFAM: YceI family protein; KEGG: nma:NMA1457 periplasmic protein; hypothetical protein complement(3802311..3802889) Polaromonas naphthalenivorans CJ2 4689420 YP_983796.1 CDS Pnap_3579 NC_008781.1 3802933 3803523 R PFAM: YceI family protein; KEGG: dar:Daro_2795 YceI; hypothetical protein complement(3802933..3803523) Polaromonas naphthalenivorans CJ2 4689267 YP_983797.1 CDS Pnap_3580 NC_008781.1 3803569 3804087 R PFAM: cytochrome B561; KEGG: bpm:BURPS1710b_3379 cytochrome b561; cytochrome B561 complement(3803569..3804087) Polaromonas naphthalenivorans CJ2 4690057 YP_983798.1 CDS Pnap_3581 NC_008781.1 3804273 3805244 R KEGG: pol:Bpro_0625 hypothetical protein; hypothetical protein complement(3804273..3805244) Polaromonas naphthalenivorans CJ2 4690132 YP_983799.1 CDS Pnap_3582 NC_008781.1 3805325 3806374 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 3805325..3806374 Polaromonas naphthalenivorans CJ2 4690218 YP_983800.1 CDS Pnap_3583 NC_008781.1 3806480 3807514 D PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: xac:XAC3367 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3806480..3807514 Polaromonas naphthalenivorans CJ2 4690149 YP_983801.1 CDS Pnap_3584 NC_008781.1 3807558 3808082 D PFAM: peptidase M23B; KEGG: xcv:XCV3487 putative metalloendopeptidase; peptidase M23B 3807558..3808082 Polaromonas naphthalenivorans CJ2 4686526 YP_983802.1 CDS Pnap_3585 NC_008781.1 3808113 3808673 R PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: eba:ebA2889 hypothetical protein; hypothetical protein complement(3808113..3808673) Polaromonas naphthalenivorans CJ2 4686595 YP_983803.1 CDS Pnap_3586 NC_008781.1 3808670 3810247 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: reu:Reut_B3942 hypothetical protein; peptidoglycan-binding domain-containing protein complement(3808670..3810247) Polaromonas naphthalenivorans CJ2 4686629 YP_983804.1 CDS Pnap_3587 NC_008781.1 3810387 3812276 R molecular chaperone; heat shock protein 90 complement(3810387..3812276) Polaromonas naphthalenivorans CJ2 4687328 YP_983805.1 CDS Pnap_3588 NC_008781.1 3812565 3813212 D KEGG: ddi:DDB0204485 hypothetical protein; hypothetical protein 3812565..3813212 Polaromonas naphthalenivorans CJ2 4687437 YP_983806.1 CDS Pnap_3589 NC_008781.1 3813401 3814063 D hypothetical protein 3813401..3814063 Polaromonas naphthalenivorans CJ2 4687977 YP_983807.1 CDS Pnap_3590 NC_008781.1 3814083 3814730 D hypothetical protein 3814083..3814730 Polaromonas naphthalenivorans CJ2 4688083 YP_983808.1 CDS Pnap_3591 NC_008781.1 3814731 3815213 D hypothetical protein 3814731..3815213 Polaromonas naphthalenivorans CJ2 4688104 YP_983809.1 CDS Pnap_3592 NC_008781.1 3815210 3816037 D KEGG: ttj:TTHA0775 hypothetical protein; hypothetical protein 3815210..3816037 Polaromonas naphthalenivorans CJ2 4688188 YP_983810.1 CDS Pnap_3593 NC_008781.1 3816034 3818121 D KEGG: dge:Dgeo_2435 hypothetical protein; hypothetical protein 3816034..3818121 Polaromonas naphthalenivorans CJ2 4688786 YP_983811.1 CDS Pnap_3594 NC_008781.1 3818185 3819534 R PFAM: PGAP1 family protein; KEGG: rfr:Rfer_3545 PGAP1-like; PGAP1 family protein complement(3818185..3819534) Polaromonas naphthalenivorans CJ2 4688600 YP_983812.1 CDS Pnap_3595 NC_008781.1 3819672 3820508 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_0606 pseudouridine synthase, Rsu; pseudouridine synthase complement(3819672..3820508) Polaromonas naphthalenivorans CJ2 4689354 YP_983813.1 CDS Pnap_3596 NC_008781.1 3820620 3821177 D KEGG: rso:RSc0361 probable transmembrane protein; hypothetical protein 3820620..3821177 Polaromonas naphthalenivorans CJ2 4689243 YP_983814.1 CDS Pnap_3597 NC_008781.1 3821202 3821846 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bja:blr5281 two-component response regulator; two component LuxR family transcriptional regulator complement(3821202..3821846) Polaromonas naphthalenivorans CJ2 4689563 YP_983815.1 CDS Pnap_3598 NC_008781.1 3821843 3823162 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: mfa:Mfla_0814 signal transduction histidine kinase, glucose-6-phosphate specific; integral membrane sensor signal transduction histidine kinase complement(3821843..3823162) Polaromonas naphthalenivorans CJ2 4690076 YP_983816.1 CDS Pnap_3599 NC_008781.1 3823415 3825883 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: mfa:Mfla_1253 TonB-dependent receptor; TonB-dependent receptor 3823415..3825883 Polaromonas naphthalenivorans CJ2 4686589 YP_983817.1 CDS Pnap_3600 NC_008781.1 3825987 3826694 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bpm:BURPS1710b_1397 DNA-binding response regulator KdpE; two component transcriptional regulator complement(3825987..3826694) Polaromonas naphthalenivorans CJ2 4688272 YP_983818.1 CDS Pnap_3601 NC_008781.1 3826704 3829403 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; KEGG: dar:Daro_1080 ATP-binding region, ATPase-like:histidine kinase A, N-terminal:osmosensitive K+ channel His kinase sensor; osmosensitive K+ channel signal transduction histidine kinase complement(3826704..3829403) Polaromonas naphthalenivorans CJ2 4689999 YP_983819.1 CDS Pnap_3602 NC_008781.1 3829422 3830012 R KEGG: bbr:BB3919 potassium-transporting ATPase C chain; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K+ transporting ATPase, KdpC subunit; potassium-transporting ATPase C complement(3829422..3830012) Polaromonas naphthalenivorans CJ2 4687290 YP_983820.1 CDS Pnap_3603 NC_008781.1 3830032 3832110 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_1086 ATPase, E1-E2 type:potassium-translocating P-type ATPase, B subunit; K+-transporting ATPase subunit B complement(3830032..3832110) Polaromonas naphthalenivorans CJ2 4690130 YP_983821.1 CDS Pnap_3604 NC_008781.1 3832130 3833929 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(3832130..3833929) Polaromonas naphthalenivorans CJ2 4686166 YP_983822.1 CDS Pnap_3605 NC_008781.1 3834319 3835026 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pol:Bpro_0605 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator complement(3834319..3835026) Polaromonas naphthalenivorans CJ2 4690155 YP_983823.1 CDS Pnap_3606 NC_008781.1 3835164 3836351 D PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_4184 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3835164..3836351 Polaromonas naphthalenivorans CJ2 4690177 YP_983824.1 CDS Pnap_3607 NC_008781.1 3836500 3838446 D PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_0604 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3836500..3838446 Polaromonas naphthalenivorans CJ2 4690214 YP_983825.1 CDS Pnap_3608 NC_008781.1 3838457 3839242 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3541 ABC transporter related; ABC transporter-like protein 3838457..3839242 Polaromonas naphthalenivorans CJ2 4690003 YP_983826.1 CDS Pnap_3609 NC_008781.1 3839380 3840309 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_0602 inner-membrane translocator; inner-membrane translocator 3839380..3840309 Polaromonas naphthalenivorans CJ2 4690029 YP_983827.1 CDS Pnap_3610 NC_008781.1 3840336 3841412 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_0601 inner-membrane translocator; inner-membrane translocator 3840336..3841412 Polaromonas naphthalenivorans CJ2 4690048 YP_983828.1 CDS Pnap_3611 NC_008781.1 3841496 3842824 D KEGG: rfr:Rfer_3538 hypothetical protein; hypothetical protein 3841496..3842824 Polaromonas naphthalenivorans CJ2 4689735 YP_983829.1 CDS Pnap_3612 NC_008781.1 3842920 3843729 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3537 ABC transporter related; ABC transporter-like protein 3842920..3843729 Polaromonas naphthalenivorans CJ2 4689762 YP_983830.1 CDS Pnap_3613 NC_008781.1 3843815 3845065 D KEGG: pol:Bpro_0598 putative phenylacetate-CoA ligase; putative phenylacetate-CoA ligase 3843815..3845065 Polaromonas naphthalenivorans CJ2 4689012 YP_983831.1 CDS Pnap_3614 NC_008781.1 3845161 3846150 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0597 uncharacterized protein UPF0065; hypothetical protein 3845161..3846150 Polaromonas naphthalenivorans CJ2 4689585 YP_983832.1 CDS Pnap_3615 NC_008781.1 3846462 3846758 R KEGG: pol:Bpro_0595 hypothetical protein; hypothetical protein complement(3846462..3846758) Polaromonas naphthalenivorans CJ2 4688413 YP_983833.1 CDS Pnap_3616 NC_008781.1 3846894 3847646 D KEGG: pol:Bpro_0594 hypothetical protein; hypothetical protein 3846894..3847646 Polaromonas naphthalenivorans CJ2 4689296 YP_983834.1 CDS Pnap_3617 NC_008781.1 3847744 3850212 D catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase 3847744..3850212 Polaromonas naphthalenivorans CJ2 4688241 YP_983835.1 CDS Pnap_3618 NC_008781.1 3850269 3850745 D PFAM: regulatory protein, MarR; KEGG: pol:Bpro_0592 transcriptional regulator, MarR family; MarR family transcriptional regulator 3850269..3850745 Polaromonas naphthalenivorans CJ2 4687336 YP_983836.1 CDS Pnap_3619 NC_008781.1 3850742 3851596 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3850742..3851596 Polaromonas naphthalenivorans CJ2 4690170 YP_983837.1 CDS Pnap_3620 NC_008781.1 3851624 3852805 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0590 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3851624..3852805 Polaromonas naphthalenivorans CJ2 4686777 YP_983838.1 CDS Pnap_3621 NC_008781.1 3852802 3854430 D PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_0589 benzoate-CoA ligase family; AMP-dependent synthetase and ligase 3852802..3854430 Polaromonas naphthalenivorans CJ2 4689680 YP_983839.1 CDS Pnap_3622 NC_008781.1 3854427 3854867 D PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_0588 thioesterase superfamily; thioesterase superfamily protein 3854427..3854867 Polaromonas naphthalenivorans CJ2 4686058 YP_983840.1 CDS Pnap_3623 NC_008781.1 3854864 3855259 D PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_0587 endoribonuclease L-PSP; endoribonuclease L-PSP 3854864..3855259 Polaromonas naphthalenivorans CJ2 4687515 YP_983841.1 CDS Pnap_3624 NC_008781.1 3855560 3855940 R KEGG: pcr:Pcryo_0811 17 kDa surface antigen; hypothetical protein complement(3855560..3855940) Polaromonas naphthalenivorans CJ2 4686769 YP_983842.1 CDS Pnap_3625 NC_008781.1 3856726 3857034 D hypothetical protein 3856726..3857034 Polaromonas naphthalenivorans CJ2 4686069 YP_983843.1 CDS Pnap_3626 NC_008781.1 3857378 3858097 D SMART: cyclic nucleotide-binding; KEGG: pol:Bpro_0177 cyclic nucleotide-binding domain (cNMP-BD) protein; CRP/FNR family transcriptional regulator 3857378..3858097 Polaromonas naphthalenivorans CJ2 4687460 YP_983844.1 CDS Pnap_3627 NC_008781.1 3858167 3858904 D SMART: regulatory protein, Crp; KEGG: pol:Bpro_0177 cyclic nucleotide-binding domain (cNMP-BD) protein; CRP/FNR family transcriptional regulator 3858167..3858904 Polaromonas naphthalenivorans CJ2 4688963 YP_983845.1 CDS Pnap_3628 NC_008781.1 3858924 3859802 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_2543 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(3858924..3859802) Polaromonas naphthalenivorans CJ2 4690008 YP_983846.1 CDS Pnap_3629 NC_008781.1 3860408 3861082 R PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: pol:Bpro_4433 two component transcriptional regulator, fis family; two component Fis family transcriptional regulator complement(3860408..3861082) Polaromonas naphthalenivorans CJ2 4689376 YP_983847.1 CDS Pnap_3630 NC_008781.1 3861164 3863461 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4434 multi-sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3861164..3863461) Polaromonas naphthalenivorans CJ2 4690073 YP_983848.1 CDS Pnap_3631 NC_008781.1 3863458 3864117 R KEGG: pol:Bpro_4435 putative proline rich signal peptide protein; hypothetical protein complement(3863458..3864117) Polaromonas naphthalenivorans CJ2 4689584 YP_983849.1 CDS Pnap_3632 NC_008781.1 3864077 3865429 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_4436 sun protein; sun protein complement(3864077..3865429) Polaromonas naphthalenivorans CJ2 4689417 YP_983850.1 CDS Pnap_3633 NC_008781.1 3865706 3866197 D KEGG: eba:p2A365 transposase, fragment; transposase 3865706..3866197 Polaromonas naphthalenivorans CJ2 4687496 YP_983851.1 CDS Pnap_3634 NC_008781.1 3866305 3866535 D KEGG: mac:MA0437 transposase; transposase 3866305..3866535 Polaromonas naphthalenivorans CJ2 4688004 YP_983852.1 CDS Pnap_3635 NC_008781.1 3866618 3867076 D KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein 3866618..3867076 Polaromonas naphthalenivorans CJ2 4686623 YP_983853.1 CDS Pnap_3636 NC_008781.1 3867096 3867572 D KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 3867096..3867572 Polaromonas naphthalenivorans CJ2 4686305 YP_983854.1 CDS Pnap_3637 NC_008781.1 3867580 3868599 R PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_4439 peptidase M48, Ste24p; peptidase M48, Ste24p complement(3867580..3868599) Polaromonas naphthalenivorans CJ2 4686748 YP_983855.1 CDS Pnap_3638 NC_008781.1 3868639 3869232 R PFAM: LemA family protein; KEGG: pol:Bpro_4440 LemA; LemA family protein complement(3868639..3869232) Polaromonas naphthalenivorans CJ2 4687329 YP_983856.1 CDS Pnap_3639 NC_008781.1 3869514 3873728 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(3869514..3873728) Polaromonas naphthalenivorans CJ2 4687837 YP_983857.1 CDS rpoB NC_008781.1 3873748 3877860 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(3873748..3877860) Polaromonas naphthalenivorans CJ2 4688631 YP_983858.1 CDS rplL NC_008781.1 3878189 3878566 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(3878189..3878566) Polaromonas naphthalenivorans CJ2 4687937 YP_983859.1 CDS rplJ NC_008781.1 3878653 3879204 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(3878653..3879204) Polaromonas naphthalenivorans CJ2 4687761 YP_983860.1 CDS rplA NC_008781.1 3879473 3880168 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(3879473..3880168) Polaromonas naphthalenivorans CJ2 4689292 YP_983861.1 CDS rplK NC_008781.1 3880165 3880599 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(3880165..3880599) Polaromonas naphthalenivorans CJ2 4688473 YP_983862.1 CDS Pnap_3645 NC_008781.1 3880776 3881372 R KEGG: pol:Bpro_4447 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; NusG antitermination factor complement(3880776..3881372) Polaromonas naphthalenivorans CJ2 4687819 YP_983863.1 CDS secE NC_008781.1 3881372 3881755 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(3881372..3881755) Polaromonas naphthalenivorans CJ2 4688834 YP_983864.1 CDS Pnap_3647 NC_008781.1 3881983 3883173 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3881983..3883173) Polaromonas naphthalenivorans CJ2 4688893 YP_983865.1 CDS Pnap_3648 NC_008781.1 3883841 3884578 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(3883841..3884578) Polaromonas naphthalenivorans CJ2 4688811 YP_983866.1 CDS trpC NC_008781.1 3884593 3885384 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; Indole-3-glycerol phosphate synthase complement(3884593..3885384) Polaromonas naphthalenivorans CJ2 4686230 YP_983867.1 CDS trpD NC_008781.1 3885440 3886543 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(3885440..3886543) Polaromonas naphthalenivorans CJ2 4689060 YP_983868.1 CDS Pnap_3651 NC_008781.1 3886536 3887585 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: pol:Bpro_4454 threonine aldolase; threonine aldolase complement(3886536..3887585) Polaromonas naphthalenivorans CJ2 4687840 YP_983869.1 CDS Pnap_3652 NC_008781.1 3887643 3888227 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(3887643..3888227) Polaromonas naphthalenivorans CJ2 4688029 YP_983870.1 CDS Pnap_3653 NC_008781.1 3888231 3888545 R PFAM: Chorismate mutase; KEGG: pol:Bpro_4456 chorismate mutase; chorismate mutase complement(3888231..3888545) Polaromonas naphthalenivorans CJ2 4686096 YP_983871.1 CDS Pnap_3654 NC_008781.1 3888549 3890048 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(3888549..3890048) Polaromonas naphthalenivorans CJ2 4686190 YP_983872.1 CDS Pnap_3655 NC_008781.1 3890486 3891073 D KEGG: pol:Bpro_4459 putative lipoprotein transmembrane; putative lipoprotein transmembrane 3890486..3891073 Polaromonas naphthalenivorans CJ2 4687191 YP_983873.1 CDS Pnap_3656 NC_008781.1 3891106 3891810 R KEGG: pol:Bpro_4462 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase complement(3891106..3891810) Polaromonas naphthalenivorans CJ2 4687824 YP_983874.1 CDS Pnap_3657 NC_008781.1 3891980 3892651 R PFAM: Ketopantoate reductase ApbA/PanE, C-terminal domain protein; KEGG: pol:Bpro_0197 2-dehydropantoate 2-reductase; ketopantoate reductase ApbA/PanE complement(3891980..3892651) Polaromonas naphthalenivorans CJ2 4687806 YP_983875.1 CDS Pnap_3658 NC_008781.1 3892712 3893251 R PFAM: cytochrome B561; KEGG: par:Psyc_2075 putative nickel-dependent hydrogenase cytochrome b-type subunit; cytochrome B561 complement(3892712..3893251) Polaromonas naphthalenivorans CJ2 4687910 YP_983876.1 CDS Pnap_3659 NC_008781.1 3893288 3893545 R KEGG: psp:PSPPH_3452 hypothetical protein; hypothetical protein complement(3893288..3893545) Polaromonas naphthalenivorans CJ2 4689209 YP_983877.1 CDS Pnap_3660 NC_008781.1 3893635 3894327 R PFAM: ribulose-phosphate 3-epimerase; KEGG: pol:Bpro_4466 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(3893635..3894327) Polaromonas naphthalenivorans CJ2 4690158 YP_983878.1 CDS apaG NC_008781.1 3894409 3894837 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 3894409..3894837 Polaromonas naphthalenivorans CJ2 4689694 YP_983879.1 CDS Pnap_3662 NC_008781.1 3894860 3896824 D KEGG: pol:Bpro_4468 putative site-specific recombinase transmembrane protein; putative site-specific recombinase transmembrane protein 3894860..3896824 Polaromonas naphthalenivorans CJ2 4688639 YP_983880.1 CDS Pnap_3663 NC_008781.1 3897027 3898286 D PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4469 sodium/hydrogen exchanger; sodium/hydrogen exchanger 3897027..3898286 Polaromonas naphthalenivorans CJ2 4687246 YP_983881.1 CDS Pnap_3664 NC_008781.1 3898276 3899421 D ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 3898276..3899421 Polaromonas naphthalenivorans CJ2 4686933 YP_983882.1 CDS Pnap_3665 NC_008781.1 3899467 3900465 D KEGG: pol:Bpro_4471 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 3899467..3900465 Polaromonas naphthalenivorans CJ2 4689342 YP_983883.1 CDS Pnap_3666 NC_008781.1 3900475 3901032 D PFAM: phosphatidylglycerophosphatase A; KEGG: pol:Bpro_4475 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 3900475..3901032 Polaromonas naphthalenivorans CJ2 4690207 YP_983884.1 CDS Pnap_3667 NC_008781.1 3901029 3901550 D PFAM: CinA domain protein; KEGG: pol:Bpro_4476 CinA-like; CinA domain-containing protein 3901029..3901550 Polaromonas naphthalenivorans CJ2 4689350 YP_983885.1 CDS Pnap_3668 NC_008781.1 3901561 3901839 R hypothetical protein complement(3901561..3901839) Polaromonas naphthalenivorans CJ2 4687857 YP_983886.1 CDS Pnap_3669 NC_008781.1 3901845 3902288 R PFAM: OsmC family protein; KEGG: rru:Rru_A0580 OsmC-like protein; OsmC family protein complement(3901845..3902288) Polaromonas naphthalenivorans CJ2 4686063 YP_983887.1 CDS Pnap_3670 NC_008781.1 3902406 3903191 R KEGG: rfr:Rfer_2633 spermidine synthase-like; spermidine synthase-like protein complement(3902406..3903191) Polaromonas naphthalenivorans CJ2 4687225 YP_983888.1 CDS Pnap_3671 NC_008781.1 3903243 3904025 R PFAM: regulatory protein, Crp; KEGG: pol:Bpro_4529 putative transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator complement(3903243..3904025) Polaromonas naphthalenivorans CJ2 4688168 YP_983889.1 CDS Pnap_3672 NC_008781.1 3904068 3904457 R hypothetical protein complement(3904068..3904457) Polaromonas naphthalenivorans CJ2 4686327 YP_983890.1 CDS Pnap_3673 NC_008781.1 3905089 3906210 D KEGG: tte:TTE2411 S-layer homology domain; hypothetical protein 3905089..3906210 Polaromonas naphthalenivorans CJ2 4688337 YP_983891.1 CDS Pnap_3674 NC_008781.1 3906234 3906908 D KEGG: pol:Bpro_1320 hypothetical protein; hypothetical protein 3906234..3906908 Polaromonas naphthalenivorans CJ2 4690217 YP_983892.1 CDS Pnap_3675 NC_008781.1 3907016 3907879 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2859 UbiE/COQ5 methyltransferase; type 11 methyltransferase 3907016..3907879 Polaromonas naphthalenivorans CJ2 4688712 YP_983893.1 CDS Pnap_3676 NC_008781.1 3908012 3910912 R KEGG: bxe:Bxe_A2123 putative chaperone protein, HscA/DnaK; putative chaperone protein, HscA/DnaK complement(3908012..3910912) Polaromonas naphthalenivorans CJ2 4686244 YP_983894.1 CDS Pnap_3677 NC_008781.1 3910977 3912890 R KEGG: bxe:Bxe_A2124 putative molecular chaperone protein HspA/DnaK; putative molecular chaperone protein HspA/DnaK complement(3910977..3912890) Polaromonas naphthalenivorans CJ2 4686455 YP_983895.1 CDS Pnap_3678 NC_008781.1 3912887 3913453 R KEGG: bte:BTH_II1321 hypothetical protein; hypothetical protein complement(3912887..3913453) Polaromonas naphthalenivorans CJ2 4687786 YP_983896.1 CDS Pnap_3679 NC_008781.1 3914029 3915252 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_1848 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3914029..3915252 Polaromonas naphthalenivorans CJ2 4689258 YP_983897.1 CDS Pnap_3680 NC_008781.1 3915375 3917612 R KEGG: cvi:CV3664 probable isocitrate dehydrogenase (NADP); TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase complement(3915375..3917612) Polaromonas naphthalenivorans CJ2 4689721 YP_983898.1 CDS Pnap_3681 NC_008781.1 3917942 3918226 D PFAM: SpoVT/AbrB domain protein; KEGG: mca:MCA1622 virulence-associated protein VagC, putative; SpoVT/AbrB domain-containing protein 3917942..3918226 Polaromonas naphthalenivorans CJ2 4689327 YP_983899.1 CDS Pnap_3682 NC_008781.1 3918230 3918634 D PFAM: PilT protein domain protein; KEGG: mca:MCA1623 virulence associated protein VagD, putative; PilT domain-containing protein 3918230..3918634 Polaromonas naphthalenivorans CJ2 4689021 YP_983900.1 CDS Pnap_3683 NC_008781.1 3918792 3920984 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(3918792..3920984) Polaromonas naphthalenivorans CJ2 4686850 YP_983901.1 CDS Pnap_3684 NC_008781.1 3921089 3921838 R KEGG: pol:Bpro_4516 haloacid dehalogenase, type II; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase complement(3921089..3921838) Polaromonas naphthalenivorans CJ2 4686298 YP_983902.1 CDS Pnap_3685 NC_008781.1 3922034 3924268 D PFAM: pyruvate carboxyltransferase; L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4514 pyruvate carboxyltransferase; pyruvate carboxyltransferase 3922034..3924268 Polaromonas naphthalenivorans CJ2 4686073 YP_983903.1 CDS Pnap_3686 NC_008781.1 3924324 3925019 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_1091 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3924324..3925019 Polaromonas naphthalenivorans CJ2 4686106 YP_983904.1 CDS Pnap_3687 NC_008781.1 3925016 3926383 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: rfr:Rfer_1092 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3925016..3926383 Polaromonas naphthalenivorans CJ2 4686140 YP_983905.1 CDS Pnap_3688 NC_008781.1 3926429 3927475 R PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0342 aldo/keto reductase; aldo/keto reductase complement(3926429..3927475) Polaromonas naphthalenivorans CJ2 4686175 YP_983906.1 CDS Pnap_3689 NC_008781.1 3927720 3928970 D PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_1097 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3927720..3928970 Polaromonas naphthalenivorans CJ2 4686207 YP_983907.1 CDS Pnap_3690 NC_008781.1 3929003 3930190 D KEGG: cvi:CV3298 maltoporin precursor; maltoporin 3929003..3930190 Polaromonas naphthalenivorans CJ2 4686217 YP_983908.1 CDS Pnap_3691 NC_008781.1 3930293 3931174 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1096 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3930293..3931174 Polaromonas naphthalenivorans CJ2 4686228 YP_983909.1 CDS Pnap_3692 NC_008781.1 3931164 3932033 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1095 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3931164..3932033 Polaromonas naphthalenivorans CJ2 4686238 YP_983910.1 CDS Pnap_3693 NC_008781.1 3932040 3933113 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_1094 ABC transporter related; ABC transporter-like protein 3932040..3933113 Polaromonas naphthalenivorans CJ2 4687343 YP_983911.1 CDS Pnap_3694 NC_008781.1 3933207 3934673 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 3933207..3934673 Polaromonas naphthalenivorans CJ2 4687387 YP_983912.1 CDS Pnap_3695 NC_008781.1 3934728 3935735 D KEGG: eba:ebA584 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; glucokinase 3934728..3935735 Polaromonas naphthalenivorans CJ2 4687409 YP_983913.1 CDS Pnap_3696 NC_008781.1 3935812 3936072 D KEGG: rfr:Rfer_0192 hypothetical protein; hypothetical protein 3935812..3936072 Polaromonas naphthalenivorans CJ2 4687221 YP_983914.1 CDS Pnap_3697 NC_008781.1 3936118 3937083 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4493 transcriptional regulator, LysR family; LysR family transcriptional regulator 3936118..3937083 Polaromonas naphthalenivorans CJ2 4688025 YP_983915.1 CDS Pnap_3698 NC_008781.1 3937189 3937824 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_4492 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(3937189..3937824) Polaromonas naphthalenivorans CJ2 4688135 YP_983916.1 CDS Pnap_3699 NC_008781.1 3937968 3938861 D specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3937968..3938861 Polaromonas naphthalenivorans CJ2 4688228 YP_983917.1 CDS Pnap_3700 NC_008781.1 3939014 3939358 R PFAM: PsiF repeat protein; KEGG: reu:Reut_A0351 PsiF; PsiF repeat-containing protein complement(3939014..3939358) Polaromonas naphthalenivorans CJ2 4688605 YP_983918.1 CDS argS NC_008781.1 3939548 3941224 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3939548..3941224 Polaromonas naphthalenivorans CJ2 4688689 YP_983919.1 CDS Pnap_3702 NC_008781.1 3941267 3942136 D PFAM: Sporulation domain protein; KEGG: pol:Bpro_4489 sporulation related; sporulation domain-containing protein 3941267..3942136 Polaromonas naphthalenivorans CJ2 4689421 YP_983920.1 CDS Pnap_3703 NC_008781.1 3942211 3942873 D PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_4488 DsbA oxidoreductase; DSBA oxidoreductase 3942211..3942873 Polaromonas naphthalenivorans CJ2 4689215 YP_983921.1 CDS Pnap_3704 NC_008781.1 3943302 3944966 D PFAM: surface antigen (D15); Polypeptide-transport-associated domain protein, ShlB-type; KEGG: par:Psyc_1782 putative heme-hemopexin utilization protein B; polypeptide-transport-associated domain-containing protein 3943302..3944966 Polaromonas naphthalenivorans CJ2 4689233 YP_983922.1 CDS Pnap_3705 NC_008781.1 3945047 3948364 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Collagen triple helix repeat; filamentous haemagglutinin domain protein; KEGG: mlo:mlr0585 hypothetical glycine-rich protein; filamentous hemagglutinin outer membrane protein 3945047..3948364 Polaromonas naphthalenivorans CJ2 4689256 YP_983923.1 CDS Pnap_3706 NC_008781.1 3948484 3949224 D KEGG: par:Psyc_1780 hypothetical protein; hypothetical protein 3948484..3949224 Polaromonas naphthalenivorans CJ2 4689597 YP_983924.1 CDS Pnap_3707 NC_008781.1 3949373 3950488 D PFAM: glycosyl transferase, family 2; KEGG: pcu:pc0452 hypothetical protein; glycosyl transferase family protein 3949373..3950488 Polaromonas naphthalenivorans CJ2 4689286 YP_983925.1 CDS Pnap_3708 NC_008781.1 3950655 3951299 D PFAM: OstA family protein; KEGG: pol:Bpro_4487 OstA-like protein; OstA family protein 3950655..3951299 Polaromonas naphthalenivorans CJ2 4690052 YP_983926.1 CDS Pnap_3709 NC_008781.1 3951304 3952101 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4486 ABC transporter related; ABC transporter-like protein 3951304..3952101 Polaromonas naphthalenivorans CJ2 4690187 YP_983927.1 CDS Pnap_3710 NC_008781.1 3952112 3953677 D TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: pol:Bpro_4485 sigma-54 (RpoN); RNA polymerase sigma-54 subunit RpoN 3952112..3953677 Polaromonas naphthalenivorans CJ2 4690023 YP_983928.1 CDS Pnap_3711 NC_008781.1 3953825 3955240 D PFAM: putative RNA methylase; THUMP domain protein; KEGG: pol:Bpro_4484 putative RNA methylase; putative RNA methylase 3953825..3955240 Polaromonas naphthalenivorans CJ2 4689734 YP_983929.1 CDS Pnap_3712 NC_008781.1 3955237 3955680 D KEGG: pol:Bpro_4483 protein of unknown function DUF132; hypothetical protein 3955237..3955680 Polaromonas naphthalenivorans CJ2 4689671 YP_983930.1 CDS Pnap_3713 NC_008781.1 3955720 3956163 R KEGG: bja:blr7500 hypothetical protein; hypothetical protein complement(3955720..3956163) Polaromonas naphthalenivorans CJ2 4689483 YP_983931.1 CDS Pnap_3714 NC_008781.1 3956210 3956551 R hypothetical protein complement(3956210..3956551) Polaromonas naphthalenivorans CJ2 4689052 YP_983932.1 CDS Pnap_3715 NC_008781.1 3956983 3957369 R PFAM: PilT protein domain protein; KEGG: tth:TTC0113 hypothetical protein; PilT domain-containing protein complement(3956983..3957369) Polaromonas naphthalenivorans CJ2 4688814 YP_983933.1 CDS Pnap_3716 NC_008781.1 3957366 3957611 R TIGRFAM: prevent-host-death family protein; KEGG: mag:amb1707 antitoxin of toxin-antitoxin stability system; prevent-host-death family protein complement(3957366..3957611) Polaromonas naphthalenivorans CJ2 4688499 YP_983934.1 CDS Pnap_3717 NC_008781.1 3957654 3958721 R TIGRFAM: cytidyltransferase-related domain; PFAM: NUDIX hydrolase; cytidylyltransferase; KEGG: syf:Synpcc7942_0205 cytidyltransferase-related; cytidyltransferase-like protein complement(3957654..3958721) Polaromonas naphthalenivorans CJ2 4688316 YP_983935.1 CDS Pnap_3718 NC_008781.1 3958729 3960429 R KEGG: ade:Adeh_0285 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; NAD+ synthetase complement(3958729..3960429) Polaromonas naphthalenivorans CJ2 4688257 YP_983936.1 CDS Pnap_3719 NC_008781.1 3960443 3961636 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(3960443..3961636) Polaromonas naphthalenivorans CJ2 4687756 YP_983937.1 CDS Pnap_3720 NC_008781.1 3961670 3962551 R KEGG: rpb:RPB_2359 hypothetical protein; hypothetical protein complement(3961670..3962551) Polaromonas naphthalenivorans CJ2 4687683 YP_983938.1 CDS Pnap_3721 NC_008781.1 3962683 3963375 D PFAM: NUDIX hydrolase; KEGG: hch:HCH_06996 ADP-ribose pyrophosphatase; NUDIX hydrolase 3962683..3963375 Polaromonas naphthalenivorans CJ2 4688436 YP_983939.1 CDS Pnap_3722 NC_008781.1 3963467 3964285 D PFAM: SEC-C motif domain protein; KEGG: pol:Bpro_4482 sec-C motif; SecC motif-containing protein 3963467..3964285 Polaromonas naphthalenivorans CJ2 4687590 YP_983940.1 CDS Pnap_3723 NC_008781.1 3964419 3964844 R hypothetical protein complement(3964419..3964844) Polaromonas naphthalenivorans CJ2 4686849 YP_983941.1 CDS Pnap_3724 NC_008781.1 3965172 3966116 D KEGG: xom:XOO_3993 ISXo7 transposase; ISXo7 transposase 3965172..3966116 Polaromonas naphthalenivorans CJ2 4687258 YP_983942.1 CDS Pnap_3725 NC_008781.1 3966149 3966787 R KEGG: dar:Daro_0912 hypothetical protein; hypothetical protein complement(3966149..3966787) Polaromonas naphthalenivorans CJ2 4687216 YP_983943.1 CDS Pnap_3726 NC_008781.1 3967045 3968538 D PFAM: Methyltransferase type 12; KEGG: rme:Rmet_2952 MCP methyltransferase, CheR-type; type 12 methyltransferase 3967045..3968538 Polaromonas naphthalenivorans CJ2 4686785 YP_983944.1 CDS Pnap_3727 NC_008781.1 3968535 3969872 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rso:RSc2736 transmembrane sensor histidine kinase transcription regulator protein; integral membrane sensor signal transduction histidine kinase 3968535..3969872 Polaromonas naphthalenivorans CJ2 4686684 YP_983945.1 CDS Pnap_3728 NC_008781.1 3969886 3971073 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rso:RSc2737 two component response regulator transcription regulator protein; response regulator receiver sensor signal transduction histidine kinase 3969886..3971073 Polaromonas naphthalenivorans CJ2 4686905 YP_983946.1 CDS Pnap_3729 NC_008781.1 3971077 3972048 D PFAM: response regulator receiver; KEGG: reu:Reut_A2812 response regulator receiver; response regulator receiver protein 3971077..3972048 Polaromonas naphthalenivorans CJ2 4686231 YP_983947.1 CDS Pnap_3730 NC_008781.1 3972052 3972567 R KEGG: pol:Bpro_4477 hypothetical protein; hypothetical protein complement(3972052..3972567) Polaromonas naphthalenivorans CJ2 4688231 YP_983948.1 CDS Pnap_3731 NC_008781.1 3972724 3974526 D KEGG: mfa:Mfla_1491 arsenite-activated ATPase (ArsA); TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase subunit ArsA 3972724..3974526 Polaromonas naphthalenivorans CJ2 4689565 YP_983949.1 CDS Pnap_3732 NC_008781.1 3975145 3975963 D PFAM: restriction endonuclease; KEGG: gme:Gmet_1797 DNA topoisomerase I:restriction endonuclease; restriction endonuclease 3975145..3975963 Polaromonas naphthalenivorans CJ2 4689769 YP_983950.1 CDS Pnap_3733 NC_008781.1 3976150 3976341 D 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 3976150..3976341 Polaromonas naphthalenivorans CJ2 4689338 YP_983951.1 CDS Pnap_3734 NC_008781.1 3976376 3977173 D PFAM: glutamine amidotransferase, class-II; KEGG: pol:Bpro_4539 glutamine amidotransferase, class-II; class-II glutamine amidotransferase 3976376..3977173 Polaromonas naphthalenivorans CJ2 4688706 YP_983952.1 CDS Pnap_3735 NC_008781.1 3977368 3978606 D KEGG: bxe:Bxe_A2968 hypothetical protein; hypothetical protein 3977368..3978606 Polaromonas naphthalenivorans CJ2 4686771 YP_983953.1 CDS Pnap_3736 NC_008781.1 3978626 3979579 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(3978626..3979579) Polaromonas naphthalenivorans CJ2 4686067 YP_983954.1 CDS Pnap_3737 NC_008781.1 3980043 3981428 D PFAM: zinc finger, SWIM domain protein; KEGG: hch:HCH_05567 protein containing SWIM Zn-chelating domain; zinc finger SWIM domain-containing protein 3980043..3981428 Polaromonas naphthalenivorans CJ2 4686421 YP_983955.1 CDS Pnap_3738 NC_008781.1 3981425 3983011 D KEGG: sma:SAV3459 hypothetical protein; hypothetical protein 3981425..3983011 Polaromonas naphthalenivorans CJ2 4686503 YP_983956.1 CDS Pnap_3739 NC_008781.1 3983014 3984111 D PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: hch:HCH_05565 MoxR-like ATPase; ATPase 3983014..3984111 Polaromonas naphthalenivorans CJ2 4686527 YP_983957.1 CDS Pnap_3740 NC_008781.1 3984108 3986549 D KEGG: hch:HCH_05564 hypothetical protein; hypothetical protein 3984108..3986549 Polaromonas naphthalenivorans CJ2 4686206 YP_983958.1 CDS Pnap_3741 NC_008781.1 3986657 3987010 D KEGG: plu:plu3717 hypothetical protein; hypothetical protein 3986657..3987010 Polaromonas naphthalenivorans CJ2 4686606 YP_983959.1 CDS Pnap_3742 NC_008781.1 3987311 3988522 D PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: hch:HCH_05563 hypothetical protein; VWA containing CoxE family protein 3987311..3988522 Polaromonas naphthalenivorans CJ2 4686226 YP_983960.1 CDS Pnap_3743 NC_008781.1 3988633 3989094 D hypothetical protein 3988633..3989094 Polaromonas naphthalenivorans CJ2 4686234 YP_983961.1 CDS Pnap_3744 NC_008781.1 3989113 3989757 D PFAM: Negative transcriptional regulator; KEGG: dar:Daro_0091 negative transcriptional regulator; FMN-binding negative transcriptional regulator 3989113..3989757 Polaromonas naphthalenivorans CJ2 4687182 YP_983962.1 CDS Pnap_3745 NC_008781.1 3989770 3990381 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_1486 two component transcriptional regulator, LuxR family; response regulator receiver protein complement(3989770..3990381) Polaromonas naphthalenivorans CJ2 4687384 YP_983963.1 CDS Pnap_3746 NC_008781.1 3990405 3992384 R KEGG: rfr:Rfer_1485 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(3990405..3992384) Polaromonas naphthalenivorans CJ2 4687390 YP_983964.1 CDS Pnap_3747 NC_008781.1 3992400 3993464 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_1484 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 3992400..3993464 Polaromonas naphthalenivorans CJ2 4687220 YP_983965.1 CDS Pnap_3748 NC_008781.1 3993618 3994964 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3993618..3994964 Polaromonas naphthalenivorans CJ2 4687946 YP_983966.1 CDS Pnap_3749 NC_008781.1 3995086 3996954 R PFAM: K+ potassium transporter; KEGG: pol:Bpro_4582 K+ potassium transporter; K+ potassium transporter complement(3995086..3996954) Polaromonas naphthalenivorans CJ2 4688111 YP_983967.1 CDS Pnap_3750 NC_008781.1 3997270 3998565 R TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_4583 glutamate--cysteine ligase GshA; glutamate--cysteine ligase complement(3997270..3998565) Polaromonas naphthalenivorans CJ2 4688150 YP_983968.1 CDS proA NC_008781.1 3998795 4000087 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(3998795..4000087) Polaromonas naphthalenivorans CJ2 4688222 YP_983969.1 CDS Pnap_3752 NC_008781.1 4000110 4000652 R KEGG: pol:Bpro_4585 hypothetical protein; hypothetical protein complement(4000110..4000652) Polaromonas naphthalenivorans CJ2 4688748 YP_983970.1 CDS Pnap_3753 NC_008781.1 4000750 4001154 R KEGG: rfr:Rfer_2344 hypothetical protein; hypothetical protein complement(4000750..4001154) Polaromonas naphthalenivorans CJ2 4688939 YP_983971.1 CDS Pnap_3754 NC_008781.1 4001219 4001881 R PFAM: nitroreductase; KEGG: pol:Bpro_4587 nitroreductase; nitroreductase complement(4001219..4001881) Polaromonas naphthalenivorans CJ2 4689404 YP_983972.1 CDS Pnap_3755 NC_008781.1 4001932 4005486 R KEGG: pol:Bpro_4588 ribonucleoside reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit, N terminal domain protein; SMART: Hedgehog/intein hint domain protein; ribonucleoside-diphosphate reductase complement(4001932..4005486) Polaromonas naphthalenivorans CJ2 4689486 YP_983973.1 CDS Pnap_3756 NC_008781.1 4005777 4006469 R PFAM: carbonic anhydrase; KEGG: pol:Bpro_4590 carbonate dehydratase; carbonate dehydratase complement(4005777..4006469) Polaromonas naphthalenivorans CJ2 4689231 YP_983974.1 CDS Pnap_3757 NC_008781.1 4006466 4007314 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_4591 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(4006466..4007314) Polaromonas naphthalenivorans CJ2 4689546 YP_983975.1 CDS Pnap_3758 NC_008781.1 4007311 4008105 R TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: rfr:Rfer_2795 respiratory nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma complement(4007311..4008105) Polaromonas naphthalenivorans CJ2 4689272 YP_983976.1 CDS Pnap_3759 NC_008781.1 4008102 4008809 R TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: pol:Bpro_4593 nitrate reductase molybdenum cofactor assembly chaperone; nitrate reductase molybdenum cofactor assembly chaperone complement(4008102..4008809) Polaromonas naphthalenivorans CJ2 4689615 YP_983977.1 CDS Pnap_3760 NC_008781.1 4008813 4010345 R TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4594 nitrate reductase, beta subunit; nitrate reductase subunit beta complement(4008813..4010345) Polaromonas naphthalenivorans CJ2 4690062 YP_983978.1 CDS Pnap_3761 NC_008781.1 4010342 4014172 R TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pol:Bpro_4595 nitrate reductase, alpha subunit; nitrate reductase subunit alpha complement(4010342..4014172) Polaromonas naphthalenivorans CJ2 4690180 YP_983979.1 CDS Pnap_3762 NC_008781.1 4014217 4015884 R KEGG: pol:Bpro_4596 nitrate/nitrite antiporter; nitrate/nitrite antiporter complement(4014217..4015884) Polaromonas naphthalenivorans CJ2 4689930 YP_983980.1 CDS Pnap_3763 NC_008781.1 4015913 4017166 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4597 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4015913..4017166) Polaromonas naphthalenivorans CJ2 4689748 YP_983981.1 CDS Pnap_3764 NC_008781.1 4017350 4018048 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_4598 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(4017350..4018048) Polaromonas naphthalenivorans CJ2 4689682 YP_983982.1 CDS Pnap_3765 NC_008781.1 4018199 4020115 R PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_4599 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; multi-sensor signal transduction histidine kinase complement(4018199..4020115) Polaromonas naphthalenivorans CJ2 4689491 YP_983983.1 CDS Pnap_3766 NC_008781.1 4020475 4020720 D hypothetical protein 4020475..4020720 Polaromonas naphthalenivorans CJ2 4689343 YP_983984.1 CDS Pnap_3767 NC_008781.1 4020794 4021591 R hypothetical protein complement(4020794..4021591) Polaromonas naphthalenivorans CJ2 4688969 YP_983985.1 CDS Pnap_3768 NC_008781.1 4021683 4021886 D KEGG: pol:Bpro_4831 integrase; integrase 4021683..4021886 Polaromonas naphthalenivorans CJ2 4686277 YP_983986.1 CDS holA NC_008781.1 4022153 4023256 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(4022153..4023256) Polaromonas naphthalenivorans CJ2 4687748 YP_983987.1 CDS Pnap_3770 NC_008781.1 4023280 4023705 R PFAM: regulatory protein, AsnC/Lrp family; Helix-turn-helix, type 11 domain protein; KEGG: pol:Bpro_0400 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(4023280..4023705) Polaromonas naphthalenivorans CJ2 4687922 YP_983988.1 CDS Pnap_3771 NC_008781.1 4023833 4024930 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 4023833..4024930 Polaromonas naphthalenivorans CJ2 4687762 YP_983989.1 CDS Pnap_3772 NC_008781.1 4024973 4025890 D TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pol:Bpro_4603 arginase; arginase 4024973..4025890 Polaromonas naphthalenivorans CJ2 4687648 YP_983990.1 CDS Pnap_3773 NC_008781.1 4025904 4026581 R KEGG: rfr:Rfer_1939 hypothetical protein; hypothetical protein complement(4025904..4026581) Polaromonas naphthalenivorans CJ2 4688340 YP_983991.1 CDS Pnap_3774 NC_008781.1 4026591 4027997 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(4026591..4027997) Polaromonas naphthalenivorans CJ2 4687595 YP_983992.1 CDS Pnap_3775 NC_008781.1 4028139 4028936 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_1937 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 4028139..4028936 Polaromonas naphthalenivorans CJ2 4687547 YP_983993.1 CDS Pnap_3776 NC_008781.1 4029000 4029263 R KEGG: rfr:Rfer_1936 hypothetical protein; hypothetical protein complement(4029000..4029263) Polaromonas naphthalenivorans CJ2 4687259 YP_983994.1 CDS Pnap_3777 NC_008781.1 4029315 4029575 R KEGG: rfr:Rfer_1935 hypothetical protein; hypothetical protein complement(4029315..4029575) Polaromonas naphthalenivorans CJ2 4686866 YP_983995.1 CDS Pnap_3778 NC_008781.1 4029590 4031056 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin complement(4029590..4031056) Polaromonas naphthalenivorans CJ2 4686787 YP_983996.1 CDS Pnap_3779 NC_008781.1 4031105 4032025 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: rfr:Rfer_1933 cytochrome c oxidase, cbb3-type, subunit III; cbb3-type cytochrome c oxidase subunit III complement(4031105..4032025) Polaromonas naphthalenivorans CJ2 4686707 YP_983997.1 CDS Pnap_3780 NC_008781.1 4032059 4032205 R PFAM: Cbb3-type cytochrome oxidase component; KEGG: rfr:Rfer_1932 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit complement(4032059..4032205) Polaromonas naphthalenivorans CJ2 4686833 YP_983998.1 CDS Pnap_3781 NC_008781.1 4032221 4032847 R CcoO; FixO; cbb3-type cytochrome c oxidase subunit II complement(4032221..4032847) Polaromonas naphthalenivorans CJ2 4689957 YP_983999.1 CDS Pnap_3782 NC_008781.1 4032861 4034297 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(4032861..4034297) Polaromonas naphthalenivorans CJ2 4687025 YP_984000.1 CDS Pnap_3783 NC_008781.1 4034364 4034504 R TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rfr:Rfer_1929 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein complement(4034364..4034504) Polaromonas naphthalenivorans CJ2 4690033 YP_984001.1 CDS Pnap_3784 NC_008781.1 4034501 4036828 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_1927 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(4034501..4036828) Polaromonas naphthalenivorans CJ2 4686987 YP_984002.1 CDS Pnap_3785 NC_008781.1 4036952 4037467 R PFAM: Rare lipoprotein B; KEGG: pol:Bpro_4604 rare lipoprotein B; rare lipoprotein B complement(4036952..4037467) Polaromonas naphthalenivorans CJ2 4686295 YP_984003.1 CDS leuS NC_008781.1 4037492 4040158 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(4037492..4040158) Polaromonas naphthalenivorans CJ2 4686290 YP_984004.1 CDS Pnap_3787 NC_008781.1 4040254 4040700 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_4606 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(4040254..4040700) Polaromonas naphthalenivorans CJ2 4686272 YP_984005.1 CDS Pnap_3788 NC_008781.1 4040697 4041410 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_4607 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(4040697..4041410) Polaromonas naphthalenivorans CJ2 4686084 YP_984006.1 CDS Pnap_3789 NC_008781.1 4041418 4042233 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(4041418..4042233) Polaromonas naphthalenivorans CJ2 4686324 YP_984007.1 CDS Pnap_3790 NC_008781.1 4042245 4042859 R PFAM: SmpA/OmlA domain protein; KEGG: pol:Bpro_4609 SmpA/OmlA; SmpA/OmlA domain-containing protein complement(4042245..4042859) Polaromonas naphthalenivorans CJ2 4686344 YP_984008.1 CDS Pnap_3791 NC_008781.1 4042938 4043396 D PFAM: ferric-uptake regulator; KEGG: pol:Bpro_4610 ferric uptake regulator, FUR family; ferric uptake regulator family protein 4042938..4043396 Polaromonas naphthalenivorans CJ2 4686112 YP_984009.1 CDS Pnap_3792 NC_008781.1 4043488 4044438 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(4043488..4044438) Polaromonas naphthalenivorans CJ2 4686111 YP_984010.1 CDS Pnap_3793 NC_008781.1 4044467 4044940 R TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: pol:Bpro_4612 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(4044467..4044940) Polaromonas naphthalenivorans CJ2 4686250 YP_984011.1 CDS Pnap_3794 NC_008781.1 4045148 4045480 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: pol:Bpro_4613 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA complement(4045148..4045480) Polaromonas naphthalenivorans CJ2 4686482 YP_984012.1 CDS Pnap_3795 NC_008781.1 4046126 4047136 D TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_4615 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 4046126..4047136 Polaromonas naphthalenivorans CJ2 4686508 YP_984013.1 CDS Pnap_3796 NC_008781.1 4047198 4047974 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(4047198..4047974) Polaromonas naphthalenivorans CJ2 4686132 YP_984014.1 CDS Pnap_3797 NC_008781.1 4048063 4049763 R PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4543 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(4048063..4049763) Polaromonas naphthalenivorans CJ2 4686613 YP_984015.1 CDS Pnap_3798 NC_008781.1 4049925 4051349 R PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: pol:Bpro_4544 NAD(P) transhydrogenase, beta subunit; NAD(P) transhydrogenase subunit beta complement(4049925..4051349) Polaromonas naphthalenivorans CJ2 4686571 YP_984016.1 CDS Pnap_3799 NC_008781.1 4051346 4051681 R KEGG: pol:Bpro_4545 NAD(P) transhydrogenase, subunit alpha part 2; NAD(P) transhydrogenase subunit alpha part 2 complement(4051346..4051681) Polaromonas naphthalenivorans CJ2 4686249 YP_984017.1 CDS Pnap_3800 NC_008781.1 4051787 4052902 R PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pol:Bpro_4546 NAD(P)(+) transhydrogenase (AB-specific); NAD(P)(+) transhydrogenase complement(4051787..4052902) Polaromonas naphthalenivorans CJ2 4686750 YP_984018.1 CDS Pnap_3801 NC_008781.1 4053155 4054690 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_4547 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(4053155..4054690) Polaromonas naphthalenivorans CJ2 4686744 YP_984019.1 CDS Pnap_3802 NC_008781.1 4054805 4055800 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4548 transcriptional regulator, LysR family; LysR family transcriptional regulator 4054805..4055800 Polaromonas naphthalenivorans CJ2 4687495 YP_984020.1 CDS Pnap_3803 NC_008781.1 4055815 4056342 D PFAM: NUDIX hydrolase; KEGG: pol:Bpro_4549 NUDIX hydrolase; NUDIX hydrolase 4055815..4056342 Polaromonas naphthalenivorans CJ2 4686768 YP_984021.1 CDS Pnap_3804 NC_008781.1 4056394 4056654 R hypothetical protein complement(4056394..4056654) Polaromonas naphthalenivorans CJ2 4686776 YP_984022.1 CDS Pnap_3805 NC_008781.1 4056671 4058794 D PFAM: Uncharacterized protein UPF0065; protein of unknown function DUF453; KEGG: pol:Bpro_4551 protein of unknown function DUF453; hypothetical protein 4056671..4058794 Polaromonas naphthalenivorans CJ2 4686782 YP_984023.1 CDS Pnap_3806 NC_008781.1 4058809 4059732 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4552 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4058809..4059732) Polaromonas naphthalenivorans CJ2 4686767 YP_984024.1 CDS Pnap_3807 NC_008781.1 4059845 4060870 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4553 uncharacterized protein UPF0065; hypothetical protein 4059845..4060870 Polaromonas naphthalenivorans CJ2 4686783 YP_984025.1 CDS Pnap_3808 NC_008781.1 4060897 4061754 D KEGG: pol:Bpro_4554 hypothetical protein; hypothetical protein 4060897..4061754 Polaromonas naphthalenivorans CJ2 4686784 YP_984026.1 CDS Pnap_3809 NC_008781.1 4061776 4062957 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4555 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 4061776..4062957 Polaromonas naphthalenivorans CJ2 4686793 YP_984027.1 CDS Pnap_3810 NC_008781.1 4062960 4063799 D PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_4556 HpcH/HpaI aldolase; HpcH/HpaI aldolase 4062960..4063799 Polaromonas naphthalenivorans CJ2 4686792 YP_984028.1 CDS Pnap_3811 NC_008781.1 4063824 4065173 D PFAM: fumarate lyase; KEGG: pol:Bpro_4557 fumarate lyase; fumarate lyase 4063824..4065173 Polaromonas naphthalenivorans CJ2 4686791 YP_984029.1 CDS Pnap_3812 NC_008781.1 4065219 4066301 D PFAM: porin, Gram-negative type; KEGG: pol:Bpro_4558 porin, gram-negative type; porin 4065219..4066301 Polaromonas naphthalenivorans CJ2 4686842 YP_984030.1 CDS Pnap_3813 NC_008781.1 4066329 4067306 R PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein complement(4066329..4067306) Polaromonas naphthalenivorans CJ2 4687334 YP_984031.1 CDS Pnap_3814 NC_008781.1 4067336 4068520 R TIGRFAM: CitB domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3489 citrate utilization protein B; CitB domain-containing protein complement(4067336..4068520) Polaromonas naphthalenivorans CJ2 4687807 YP_984032.1 CDS Pnap_3815 NC_008781.1 4068507 4069916 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(4068507..4069916) Polaromonas naphthalenivorans CJ2 4687467 YP_984033.1 CDS Pnap_3816 NC_008781.1 4070000 4070932 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0637 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4070000..4070932) Polaromonas naphthalenivorans CJ2 4687532 YP_984034.1 CDS mnmA NC_008781.1 4070983 4072167 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 4070983..4072167 Polaromonas naphthalenivorans CJ2 4687533 YP_984035.1 CDS Pnap_3818 NC_008781.1 4072254 4073729 R PFAM: MltA-interacting MipA family protein; KEGG: pol:Bpro_4564 MltA-interacting MipA; MltA-interacting MipA family protein complement(4072254..4073729) Polaromonas naphthalenivorans CJ2 4687525 YP_984036.1 CDS Pnap_3819 NC_008781.1 4073859 4074386 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pol:Bpro_4565 single-strand binding protein; ssDNA-binding protein complement(4073859..4074386) Polaromonas naphthalenivorans CJ2 4687557 YP_984037.1 CDS Pnap_3820 NC_008781.1 4074516 4075880 D PFAM: Cl- channel, voltage-gated family protein; KEGG: rfr:Rfer_1155 Cl-channel, voltage gated; Cl- channel voltage-gated family protein 4074516..4075880 Polaromonas naphthalenivorans CJ2 4687548 YP_984038.1 CDS Pnap_3821 NC_008781.1 4075885 4077087 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4567 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4075885..4077087) Polaromonas naphthalenivorans CJ2 4687559 YP_984039.1 CDS Pnap_3822 NC_008781.1 4077258 4078112 R KEGG: rme:Rmet_3878 hypothetical protein; hypothetical protein complement(4077258..4078112) Polaromonas naphthalenivorans CJ2 4687560 YP_984040.1 CDS Pnap_3823 NC_008781.1 4078125 4078466 R KEGG: mca:MCA0458 cysteine rich repeat domain protein, putative; hypothetical protein complement(4078125..4078466) Polaromonas naphthalenivorans CJ2 4687566 YP_984041.1 CDS Pnap_3824 NC_008781.1 4078463 4078744 R hypothetical protein complement(4078463..4078744) Polaromonas naphthalenivorans CJ2 4687572 YP_984042.1 CDS Pnap_3825 NC_008781.1 4078842 4079609 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0208 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4078842..4079609 Polaromonas naphthalenivorans CJ2 4687562 YP_984043.1 CDS Pnap_3826 NC_008781.1 4079606 4080913 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: bps:BPSL1037 putative two-component system, sensor kinase; integral membrane sensor signal transduction histidine kinase 4079606..4080913 Polaromonas naphthalenivorans CJ2 4688414 YP_984044.1 CDS Pnap_3827 NC_008781.1 4080983 4084057 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pol:Bpro_4568 excinuclease ABC, A subunit; excinuclease ABC subunit A 4080983..4084057 Polaromonas naphthalenivorans CJ2 4687707 YP_984045.1 CDS Pnap_3828 NC_008781.1 4084139 4085074 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: yps:YPTB2498 possible DMT superfamliy, DME family drug/metabolite exporter; hypothetical protein 4084139..4085074 Polaromonas naphthalenivorans CJ2 4687976 YP_984046.1 CDS Pnap_3829 NC_008781.1 4085284 4086993 D PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMc01525 putative dipeptide binding periplasmic protein; extracellular solute-binding protein 4085284..4086993 Polaromonas naphthalenivorans CJ2 4687965 YP_984047.1 CDS Pnap_3830 NC_008781.1 4087011 4088105 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr5514 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4087011..4088105 Polaromonas naphthalenivorans CJ2 4687757 YP_984048.1 CDS Pnap_3831 NC_008781.1 4088102 4089028 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_870 putative dipeptide transport system permease ABC transporter protein; binding-protein-dependent transport system inner membrane protein 4088102..4089028 Polaromonas naphthalenivorans CJ2 4687760 YP_984049.1 CDS Pnap_3832 NC_008781.1 4089025 4089867 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc01528 putative dipeptide transport ATP-binding ABC transporter protein; ABC transporter-like protein 4089025..4089867 Polaromonas naphthalenivorans CJ2 4688056 YP_984050.1 CDS Pnap_3833 NC_008781.1 4089864 4090637 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mlr5517 ABC transporter, ATP-binding protein; ABC transporter-like protein 4089864..4090637 Polaromonas naphthalenivorans CJ2 4687801 YP_984051.1 CDS Pnap_3834 NC_008781.1 4090725 4091747 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bja:bll6212 transcriptional regulatory protein; helix-turn-helix domain-containing protein complement(4090725..4091747) Polaromonas naphthalenivorans CJ2 4688960 YP_984052.1 CDS Pnap_3835 NC_008781.1 4091930 4093381 D PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 4091930..4093381 Polaromonas naphthalenivorans CJ2 4687810 YP_984053.1 CDS Pnap_3836 NC_008781.1 4093420 4093740 D KEGG: eba:ebB97 probable p-cresol methylhydroxylase subunit; putative p-cresol methylhydroxylase subunit 4093420..4093740 Polaromonas naphthalenivorans CJ2 4688121 YP_984054.1 CDS Pnap_3837 NC_008781.1 4093754 4094284 D KEGG: noc:Noc_2407 hypothetical protein; hypothetical protein 4093754..4094284 Polaromonas naphthalenivorans CJ2 4687811 YP_984055.1 CDS Pnap_3838 NC_008781.1 4094298 4095851 D PFAM: FAD linked oxidase domain protein; KEGG: eba:ebA3165 probable p-cresol methylhydroxylase subunit; FAD linked oxidase domain-containing protein 4094298..4095851 Polaromonas naphthalenivorans CJ2 4687822 YP_984056.1 CDS Pnap_3839 NC_008781.1 4095881 4096777 D KEGG: eba:ebA5757 conserved hypothetical protein, possibly involved in regulation of phenolics degradation; regulation of phenolics degradation protein 4095881..4096777 Polaromonas naphthalenivorans CJ2 4687839 YP_984057.1 CDS Pnap_3840 NC_008781.1 4096811 4097818 D PFAM: peptidase M19, renal dipeptidase; KEGG: hypothetical protein; peptidase M19 4096811..4097818 Polaromonas naphthalenivorans CJ2 4687841 YP_984058.1 CDS Pnap_3841 NC_008781.1 4097851 4098300 D PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_4578 thioesterase superfamily; thioesterase superfamily protein 4097851..4098300 Polaromonas naphthalenivorans CJ2 4687827 YP_984059.1 CDS Pnap_3842 NC_008781.1 4098692 4100641 D KEGG: bpm:BURPS1710b_A1122 putative outer membrane protein; putative outer membrane protein 4098692..4100641 Polaromonas naphthalenivorans CJ2 4687844 YP_984060.1 CDS pyrF NC_008781.1 4100700 4101548 R type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(4100700..4101548) Polaromonas naphthalenivorans CJ2 4687849 YP_984061.1 CDS Pnap_3844 NC_008781.1 4101573 4102373 R KEGG: pol:Bpro_4619 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein complement(4101573..4102373) Polaromonas naphthalenivorans CJ2 4688206 YP_984062.1 CDS Pnap_3845 NC_008781.1 4102390 4102884 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4620 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(4102390..4102884) Polaromonas naphthalenivorans CJ2 4687890 YP_984063.1 CDS Pnap_3846 NC_008781.1 4102891 4103670 R PFAM: peptidase M22, glycoprotease; KEGG: pol:Bpro_4621 peptidase M22, glycoprotease; peptidase M22, glycoprotease complement(4102891..4103670) Polaromonas naphthalenivorans CJ2 4688176 YP_984064.1 CDS Pnap_3847 NC_008781.1 4103738 4105324 D KEGG: pol:Bpro_4622 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 4103738..4105324 Polaromonas naphthalenivorans CJ2 4688216 YP_984065.1 CDS Pnap_3848 NC_008781.1 4105661 4106545 D PFAM: transglutaminase domain protein; KEGG: rpc:RPC_0968 transglutaminase-like; transglutaminase domain-containing protein 4105661..4106545 Polaromonas naphthalenivorans CJ2 4687916 YP_984066.1 CDS Pnap_3849 NC_008781.1 4106542 4107258 D KEGG: eba:ebA6983 predicted N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 4106542..4107258 Polaromonas naphthalenivorans CJ2 4688236 YP_984067.1 CDS Pnap_3850 NC_008781.1 4107341 4107685 D TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; KEGG: pol:Bpro_0099 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 4107341..4107685 Polaromonas naphthalenivorans CJ2 4688240 YP_984068.1 CDS Pnap_3851 NC_008781.1 4107759 4108028 D KEGG: rfr:Rfer_3825 hypothetical protein; hypothetical protein 4107759..4108028 Polaromonas naphthalenivorans CJ2 4687917 YP_984069.1 CDS Pnap_3852 NC_008781.1 4108048 4109145 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_C1356 alcohol dehydrogenase (Zn-dependent); alcohol dehydrogenase complement(4108048..4109145) Polaromonas naphthalenivorans CJ2 4688242 YP_984070.1 CDS Pnap_3853 NC_008781.1 4109304 4109633 D KEGG: rfr:Rfer_3307 hypothetical protein; hypothetical protein 4109304..4109633 Polaromonas naphthalenivorans CJ2 4688246 YP_984071.1 CDS Pnap_3854 NC_008781.1 4109660 4110493 D PFAM: iron permease FTR1; KEGG: rfr:Rfer_3306 iron permease FTR1; iron permease FTR1 4109660..4110493 Polaromonas naphthalenivorans CJ2 4688269 YP_984072.1 CDS Pnap_3855 NC_008781.1 4110468 4111223 R KEGG: rfr:Rfer_0328 hypothetical protein; hypothetical protein complement(4110468..4111223) Polaromonas naphthalenivorans CJ2 4688286 YP_984073.1 CDS Pnap_3856 NC_008781.1 4111357 4112175 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat; Sel1 domain-containing protein 4111357..4112175 Polaromonas naphthalenivorans CJ2 4688288 YP_984074.1 CDS Pnap_3857 NC_008781.1 4112235 4113479 R TIGRFAM: esterase, PHB depolymerase family; KEGG: pol:Bpro_2065 esterase, PHB depolymerase; PHB depolymerase family esterase complement(4112235..4113479) Polaromonas naphthalenivorans CJ2 4688291 YP_984075.1 CDS Pnap_3858 NC_008781.1 4113538 4113960 R KEGG: pol:Bpro_2066 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domain; CopG/Arc/MetJ family transcriptional regulator complement(4113538..4113960) Polaromonas naphthalenivorans CJ2 4688292 YP_984076.1 CDS Pnap_3859 NC_008781.1 4114131 4114364 R PFAM: SlyX family protein; KEGG: bbr:BB1266 SlyX protein; SlyX family protein complement(4114131..4114364) Polaromonas naphthalenivorans CJ2 4688297 YP_984077.1 CDS Pnap_3860 NC_008781.1 4114468 4115613 D PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0371 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4114468..4115613 Polaromonas naphthalenivorans CJ2 4688303 YP_984078.1 CDS Pnap_3861 NC_008781.1 4115633 4116616 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_4625 SUA5/YciO/YrdC/YwlC; Sua5/YciO/YrdC/YwlC family protein complement(4115633..4116616) Polaromonas naphthalenivorans CJ2 4688311 YP_984079.1 CDS Pnap_3862 NC_008781.1 4116616 4117848 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase complement(4116616..4117848) Polaromonas naphthalenivorans CJ2 4688438 YP_984080.1 CDS Pnap_3863 NC_008781.1 4117845 4118354 R KEGG: pol:Bpro_4627 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(4117845..4118354) Polaromonas naphthalenivorans CJ2 4690140 YP_984081.1 CDS Pnap_3864 NC_008781.1 4118559 4119446 D PFAM: Thioredoxin domain; KEGG: pol:Bpro_4628 thioredoxin; thioredoxin domain-containing protein 4118559..4119446 Polaromonas naphthalenivorans CJ2 4686271 YP_984082.1 CDS Pnap_3865 NC_008781.1 4119443 4119838 R KEGG: rme:Rmet_0309 hypothetical protein; hypothetical protein complement(4119443..4119838) Polaromonas naphthalenivorans CJ2 4688360 YP_984083.1 CDS Pnap_3866 NC_008781.1 4119917 4120498 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bms:BR1197 ThiJ/PfpI family protein; PfpI family intracellular peptidase complement(4119917..4120498) Polaromonas naphthalenivorans CJ2 4688869 YP_984084.1 CDS Pnap_3867 NC_008781.1 4120614 4120850 R KEGG: hch:HCH_00932 hypothetical protein; hypothetical protein complement(4120614..4120850) Polaromonas naphthalenivorans CJ2 4688668 YP_984085.1 CDS Pnap_3868 NC_008781.1 4120877 4121794 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(4120877..4121794) Polaromonas naphthalenivorans CJ2 4688953 YP_984086.1 CDS Pnap_3869 NC_008781.1 4121897 4122961 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(4121897..4122961) Polaromonas naphthalenivorans CJ2 4689729 YP_984087.1 CDS Pnap_3870 NC_008781.1 4123071 4124480 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4631 histidine kinase; histidine kinase complement(4123071..4124480) Polaromonas naphthalenivorans CJ2 4688905 YP_984088.1 CDS Pnap_3871 NC_008781.1 4124477 4125169 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4632 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(4124477..4125169) Polaromonas naphthalenivorans CJ2 4688968 YP_984089.1 CDS Pnap_3872 NC_008781.1 4125238 4126041 D KEGG: pol:Bpro_4633 PAP2 (acid phosphatase) superfamily protein-like; PAP2 (acid phosphatase) superfamily protein-like protein 4125238..4126041 Polaromonas naphthalenivorans CJ2 4689005 YP_984090.1 CDS Pnap_3873 NC_008781.1 4126076 4127509 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(4126076..4127509) Polaromonas naphthalenivorans CJ2 4689006 YP_984091.1 CDS pgk NC_008781.1 4127713 4128906 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(4127713..4128906) Polaromonas naphthalenivorans CJ2 4689003 YP_984092.1 CDS Pnap_3875 NC_008781.1 4129021 4129374 R PFAM: branched-chain amino acid transport; KEGG: pol:Bpro_4636 branched-chain amino acid transport; branched-chain amino acid transport complement(4129021..4129374) Polaromonas naphthalenivorans CJ2 4689007 YP_984093.1 CDS Pnap_3876 NC_008781.1 4129371 4130120 R PFAM: AzlC family protein; KEGG: pol:Bpro_4637 AzlC-like; AzlC family protein complement(4129371..4130120) Polaromonas naphthalenivorans CJ2 4689051 YP_984094.1 CDS Pnap_3877 NC_008781.1 4130117 4131088 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: pol:Bpro_4638 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(4130117..4131088) Polaromonas naphthalenivorans CJ2 4690189 YP_984095.1 CDS Pnap_3878 NC_008781.1 4131156 4131677 R KEGG: pol:Bpro_4639 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(4131156..4131677) Polaromonas naphthalenivorans CJ2 4689462 YP_984096.1 CDS Pnap_3879 NC_008781.1 4131823 4133115 D PFAM: Peptidoglycan-binding LysM; KEGG: pol:Bpro_4640 peptidoglycan-binding LysM; peptidoglycan-binding LysM 4131823..4133115 Polaromonas naphthalenivorans CJ2 4689104 YP_984097.1 CDS Pnap_3880 NC_008781.1 4133447 4134682 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB 4133447..4134682 Polaromonas naphthalenivorans CJ2 4689475 YP_984098.1 CDS Pnap_3881 NC_008781.1 4134675 4135874 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pol:Bpro_4641 DNA processing protein DprA, putative; DNA protecting protein DprA 4134675..4135874 Polaromonas naphthalenivorans CJ2 4689204 YP_984099.1 CDS Pnap_3882 NC_008781.1 4135899 4136414 D PFAM: protein of unknown function DUF494; KEGG: pol:Bpro_4642 protein of unknown function DUF494; hypothetical protein 4135899..4136414 Polaromonas naphthalenivorans CJ2 4689218 YP_984100.1 CDS Pnap_3883 NC_008781.1 4136442 4138784 R KEGG: pol:Bpro_4643 protein of unknown function DUF1631; hypothetical protein complement(4136442..4138784) Polaromonas naphthalenivorans CJ2 4689224 YP_984101.1 CDS secF NC_008781.1 4138889 4139842 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(4138889..4139842) Polaromonas naphthalenivorans CJ2 4689479 YP_984102.1 CDS secD NC_008781.1 4139881 4141758 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(4139881..4141758) Polaromonas naphthalenivorans CJ2 4689515 YP_984103.1 CDS Pnap_3886 NC_008781.1 4141849 4142130 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pol:Bpro_4646 preprotein translocase, YajC subunit; preprotein translocase subunit YajC complement(4141849..4142130) Polaromonas naphthalenivorans CJ2 4689236 YP_984104.1 CDS Pnap_3887 NC_008781.1 4142389 4146009 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(4142389..4146009) Polaromonas naphthalenivorans CJ2 4689554 YP_984105.1 CDS Pnap_3888 NC_008781.1 4146128 4146694 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4648 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4146128..4146694 Polaromonas naphthalenivorans CJ2 4689556 YP_984106.1 CDS Pnap_3889 NC_008781.1 4146742 4147170 D hypothetical protein 4146742..4147170 Polaromonas naphthalenivorans CJ2 4689571 YP_984107.1 CDS Pnap_3890 NC_008781.1 4147498 4147833 D KEGG: rsp:RSP_3768 hypothetical protein; hypothetical protein 4147498..4147833 Polaromonas naphthalenivorans CJ2 4689641 YP_984108.1 CDS Pnap_3891 NC_008781.1 4147972 4150182 R PFAM: protein of unknown function DUF839; KEGG: pol:Bpro_1725 twin-arginine translocation pathway signal; hypothetical protein complement(4147972..4150182) Polaromonas naphthalenivorans CJ2 4689285 YP_984109.1 CDS Pnap_3892 NC_008781.1 4150291 4150656 R KEGG: pol:Bpro_4650 hypothetical protein; hypothetical protein complement(4150291..4150656) Polaromonas naphthalenivorans CJ2 4689655 YP_984110.1 CDS Pnap_3893 NC_008781.1 4150675 4151919 R PFAM: MltA domain protein; 3D domain protein; KEGG: pol:Bpro_4651 MltA; MltA domain-containing protein complement(4150675..4151919) Polaromonas naphthalenivorans CJ2 4689701 YP_984111.1 CDS Pnap_3894 NC_008781.1 4152024 4152650 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4652 two component transcriptional regulator, LuxR family; response regulator receiver protein complement(4152024..4152650) Polaromonas naphthalenivorans CJ2 4689297 YP_984112.1 CDS Pnap_3895 NC_008781.1 4152652 4154748 R KEGG: pol:Bpro_4653 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(4152652..4154748) Polaromonas naphthalenivorans CJ2 4689716 YP_984113.1 CDS Pnap_3896 NC_008781.1 4154753 4155559 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_4654 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4154753..4155559) Polaromonas naphthalenivorans CJ2 4690221 YP_984114.1 CDS Pnap_3897 NC_008781.1 4155562 4159701 R KEGG: pol:Bpro_4655 hypothetical protein; hypothetical protein complement(4155562..4159701) Polaromonas naphthalenivorans CJ2 4689751 YP_984115.1 CDS Pnap_3898 NC_008781.1 4159773 4162562 D PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: pol:Bpro_4656 glutamate-ammonia-ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 4159773..4162562 Polaromonas naphthalenivorans CJ2 4689732 YP_984116.1 CDS Pnap_3899 NC_008781.1 4162673 4163416 D PFAM: regulatory protein, TetR; KEGG: mca:MCA1807 transcriptional regulator, TetR family; TetR family transcriptional regulator 4162673..4163416 Polaromonas naphthalenivorans CJ2 4689963 YP_984117.1 CDS Pnap_3900 NC_008781.1 4163413 4164879 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_4106 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 4163413..4164879 Polaromonas naphthalenivorans CJ2 4689928 YP_984118.1 CDS Pnap_3901 NC_008781.1 4164947 4166137 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_4105 secretion protein HlyD; RND family efflux transporter MFP subunit 4164947..4166137 Polaromonas naphthalenivorans CJ2 4689828 YP_984119.1 CDS Pnap_3902 NC_008781.1 4166134 4169268 D PFAM: acriflavin resistance protein; KEGG: dar:Daro_0459 acriflavin resistance protein; acriflavin resistance protein 4166134..4169268 Polaromonas naphthalenivorans CJ2 4690043 YP_984120.1 CDS Pnap_3903 NC_008781.1 4169319 4169576 D hypothetical protein 4169319..4169576 Polaromonas naphthalenivorans CJ2 4690193 YP_984121.1 CDS Pnap_3904 NC_008781.1 4169816 4170070 R TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; KEGG: ssn:SSO_2087 hypothetical protein; addiction module antitoxin complement(4169816..4170070) Polaromonas naphthalenivorans CJ2 4690208 YP_984122.1 CDS Pnap_3905 NC_008781.1 4170067 4170318 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: neu:NE0712 DUF172; prevent-host-death family protein complement(4170067..4170318) Polaromonas naphthalenivorans CJ2 4690147 YP_984123.1 CDS Pnap_3906 NC_008781.1 4170576 4171514 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cvi:CV4290 probable transcriptional regulator LysR-family; LysR family transcriptional regulator complement(4170576..4171514) Polaromonas naphthalenivorans CJ2 4690182 YP_984124.1 CDS Pnap_3907 NC_008781.1 4171613 4172620 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4458 hypothetical protein; hypothetical protein 4171613..4172620 Polaromonas naphthalenivorans CJ2 4690172 YP_984125.1 CDS Pnap_3908 NC_008781.1 4172617 4173705 D PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 4172617..4173705 Polaromonas naphthalenivorans CJ2 4690053 YP_984126.1 CDS Pnap_3909 NC_008781.1 4173805 4174800 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_C6140 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 4173805..4174800 Polaromonas naphthalenivorans CJ2 4690118 YP_984127.1 CDS Pnap_3910 NC_008781.1 4174921 4175415 R TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: pol:Bpro_4657 RfaE bifunctional protein, domain II; bifunctional protein RfaE complement(4174921..4175415) Polaromonas naphthalenivorans CJ2 4690104 YP_984128.1 CDS Pnap_3911 NC_008781.1 4175412 4176281 R KEGG: pol:Bpro_4658 hypothetical protein; hypothetical protein complement(4175412..4176281) Polaromonas naphthalenivorans CJ2 4690060 YP_984129.1 CDS Pnap_3912 NC_008781.1 4176514 4177083 D PFAM: glutathione peroxidase; KEGG: pol:Bpro_4659 glutathione peroxidase; glutathione peroxidase 4176514..4177083 Polaromonas naphthalenivorans CJ2 4690078 YP_984130.1 CDS Pnap_3913 NC_008781.1 4177416 4178030 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_4661 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(4177416..4178030) Polaromonas naphthalenivorans CJ2 4689666 YP_984131.1 CDS Pnap_3914 NC_008781.1 4178115 4179566 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4178115..4179566 Polaromonas naphthalenivorans CJ2 4687751 YP_984132.1 CDS Pnap_3915 NC_008781.1 4179637 4179948 R KEGG: pol:Bpro_4663 hypothetical protein; hypothetical protein complement(4179637..4179948) Polaromonas naphthalenivorans CJ2 4690031 YP_984133.1 CDS Pnap_3916 NC_008781.1 4180055 4180465 R PFAM: protein of unknown function DUF1289; KEGG: pol:Bpro_4664 protein of unknown function DUF1289; hypothetical protein complement(4180055..4180465) Polaromonas naphthalenivorans CJ2 4690054 YP_984134.1 CDS Pnap_3917 NC_008781.1 4180921 4181637 D PFAM: Integral membrane protein TerC; KEGG: pol:Bpro_4666 integral membrane protein TerC; integral membrane protein TerC 4180921..4181637 Polaromonas naphthalenivorans CJ2 4689669 YP_984135.1 CDS Pnap_3918 NC_008781.1 4181690 4182043 D PFAM: membrane protein of unknown function; KEGG: pol:Bpro_4668 membrane protein of unknown function; hypothetical protein 4181690..4182043 Polaromonas naphthalenivorans CJ2 4689589 YP_984136.1 CDS Pnap_3919 NC_008781.1 4181999 4183648 R PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_4669 peptidase M48, Ste24p; peptidase M48, Ste24p complement(4181999..4183648) Polaromonas naphthalenivorans CJ2 4689646 YP_984137.1 CDS Pnap_3920 NC_008781.1 4183729 4184250 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: pol:Bpro_4671 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 4183729..4184250 Polaromonas naphthalenivorans CJ2 4689613 YP_984138.1 CDS Pnap_3921 NC_008781.1 4184382 4185365 D PFAM: phage integrase family protein; KEGG: mag:amb3648 integrase; phage integrase family protein 4184382..4185365 Polaromonas naphthalenivorans CJ2 4689609 YP_984139.1 CDS Pnap_3922 NC_008781.1 4185753 4186064 R hypothetical protein complement(4185753..4186064) Polaromonas naphthalenivorans CJ2 4689601 YP_984140.1 CDS Pnap_3923 NC_008781.1 4186476 4186793 D KEGG: reu:Reut_A2492 hypothetical protein; hypothetical protein 4186476..4186793 Polaromonas naphthalenivorans CJ2 4688604 YP_984141.1 CDS Pnap_3924 NC_008781.1 4186852 4187880 D PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 4186852..4187880 Polaromonas naphthalenivorans CJ2 4689251 YP_984142.1 CDS Pnap_3925 NC_008781.1 4188287 4189954 D KEGG: psp:PSPPH_4218 hypothetical protein; hypothetical protein 4188287..4189954 Polaromonas naphthalenivorans CJ2 4689271 YP_984143.1 CDS Pnap_3926 NC_008781.1 4189958 4191550 D PFAM: DNA-directed DNA polymerase; KEGG: psp:PSPPH_4219 DNA polymerase I domain protein; DNA-directed DNA polymerase 4189958..4191550 Polaromonas naphthalenivorans CJ2 4689521 YP_984144.1 CDS Pnap_3927 NC_008781.1 4191955 4192380 R KEGG: dar:Daro_0799 hypothetical protein; hypothetical protein complement(4191955..4192380) Polaromonas naphthalenivorans CJ2 4689463 YP_984145.1 CDS Pnap_3928 NC_008781.1 4192453 4193028 R PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: dar:Daro_3523 resolvase, N-terminal:resolvase helix-turn-helix region; resolvase domain-containing protein complement(4192453..4193028) Polaromonas naphthalenivorans CJ2 4689177 YP_984146.1 CDS Pnap_3929 NC_008781.1 4193291 4193680 D hypothetical protein 4193291..4193680 Polaromonas naphthalenivorans CJ2 4689494 YP_984147.1 CDS Pnap_3930 NC_008781.1 4193869 4195266 D KEGG: tel:tll1781 unknown protein; hypothetical protein 4193869..4195266 Polaromonas naphthalenivorans CJ2 4689419 YP_984148.1 CDS Pnap_3931 NC_008781.1 4195253 4195690 D KEGG: tel:tll1780 unknown protein; hypothetical protein 4195253..4195690 Polaromonas naphthalenivorans CJ2 4689155 YP_984149.1 CDS Pnap_3932 NC_008781.1 4195904 4196413 D hypothetical protein 4195904..4196413 Polaromonas naphthalenivorans CJ2 4688950 YP_984150.1 CDS Pnap_3933 NC_008781.1 4196732 4197397 D hypothetical protein 4196732..4197397 Polaromonas naphthalenivorans CJ2 4688938 YP_984151.1 CDS Pnap_3934 NC_008781.1 4199081 4199467 D hypothetical protein 4199081..4199467 Polaromonas naphthalenivorans CJ2 4689370 YP_984152.1 CDS Pnap_3935 NC_008781.1 4200273 4200710 D hypothetical protein 4200273..4200710 Polaromonas naphthalenivorans CJ2 4688937 YP_984153.1 CDS Pnap_3936 NC_008781.1 4200712 4200969 D hypothetical protein 4200712..4200969 Polaromonas naphthalenivorans CJ2 4688925 YP_984154.1 CDS Pnap_3937 NC_008781.1 4201258 4201842 R KEGG: rfr:Rfer_4321 hypothetical protein; hypothetical protein complement(4201258..4201842) Polaromonas naphthalenivorans CJ2 4688921 YP_984155.1 CDS Pnap_3938 NC_008781.1 4202561 4203382 R hypothetical protein complement(4202561..4203382) Polaromonas naphthalenivorans CJ2 4688915 YP_984156.1 CDS Pnap_3939 NC_008781.1 4205401 4205700 R KEGG: bur:Bcep18194_B1226 histone-like nucleoid-structuring protein H-NS; histone-like nucleoid-structuring protein H-NS complement(4205401..4205700) Polaromonas naphthalenivorans CJ2 4688922 YP_984157.1 CDS Pnap_3940 NC_008781.1 4206222 4206626 R hypothetical protein complement(4206222..4206626) Polaromonas naphthalenivorans CJ2 4688891 YP_984158.1 CDS Pnap_3941 NC_008781.1 4207877 4208053 D KEGG: rfr:Rfer_4040 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis-like protein 4207877..4208053 Polaromonas naphthalenivorans CJ2 4688870 YP_984159.1 CDS Pnap_3942 NC_008781.1 4208075 4209595 R PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase; O-antigen polymerase complement(4208075..4209595) Polaromonas naphthalenivorans CJ2 4688624 YP_984160.1 CDS Pnap_3943 NC_008781.1 4209757 4210608 R KEGG: pol:Bpro_4670 FimB; FimB protein complement(4209757..4210608) Polaromonas naphthalenivorans CJ2 4688644 YP_984161.1 CDS Pnap_3944 NC_008781.1 4210636 4211136 R PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin; fimbrial protein pilin complement(4210636..4211136) Polaromonas naphthalenivorans CJ2 4688586 YP_984162.1 CDS Pnap_3945 NC_008781.1 4211606 4212106 R PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin; fimbrial protein pilin complement(4211606..4212106) Polaromonas naphthalenivorans CJ2 4688615 YP_984163.1 CDS Pnap_3946 NC_008781.1 4212231 4212740 R PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin; fimbrial protein pilin complement(4212231..4212740) Polaromonas naphthalenivorans CJ2 4688833 YP_984164.1 CDS Pnap_3948 NC_008781.1 4213602 4213895 R PFAM: DNA polymerase, beta domain protein region; KEGG: noc:Noc_1203 DNA polymerase, beta-like region; DNA polymerase subunit beta complement(4213602..4213895) Polaromonas naphthalenivorans CJ2 4688203 YP_984165.1 CDS Pnap_3949 NC_008781.1 4214104 4214670 R PFAM: Forkhead-associated protein; KEGG: pol:Bpro_4677 FHA domain containing protein; FHA domain-containing protein complement(4214104..4214670) Polaromonas naphthalenivorans CJ2 4688829 YP_984166.1 CDS Pnap_3950 NC_008781.1 4214710 4215495 R PFAM: protein phosphatase 2C domain protein; KEGG: pol:Bpro_4678 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein complement(4214710..4215495) Polaromonas naphthalenivorans CJ2 4688120 YP_984167.1 CDS Pnap_3951 NC_008781.1 4215649 4216350 R PFAM: Integral membrane protein TerC; KEGG: rfr:Rfer_3943 integral membrane protein TerC; integral membrane protein TerC complement(4215649..4216350) Polaromonas naphthalenivorans CJ2 4688603 YP_984168.1 CDS Pnap_3952 NC_008781.1 4216463 4217359 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(4216463..4217359) Polaromonas naphthalenivorans CJ2 4688233 YP_984169.1 CDS sucC NC_008781.1 4217377 4218537 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(4217377..4218537) Polaromonas naphthalenivorans CJ2 4688214 YP_984170.1 CDS Pnap_3954 NC_008781.1 4218773 4219684 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 4218773..4219684 Polaromonas naphthalenivorans CJ2 4688469 YP_984171.1 CDS Pnap_3955 NC_008781.1 4219796 4220302 R PFAM: regulatory protein RecX; KEGG: pol:Bpro_4684 regulatory protein RecX; regulatory protein RecX complement(4219796..4220302) Polaromonas naphthalenivorans CJ2 4687888 YP_984172.1 CDS Pnap_3956 NC_008781.1 4220381 4221535 R KEGG: pol:Bpro_4685 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recombination protein RecA complement(4220381..4221535) Polaromonas naphthalenivorans CJ2 4688177 YP_984173.1 CDS Pnap_3957 NC_008781.1 4221724 4222221 D PFAM: regulatory protein, MarR; KEGG: pol:Bpro_4686 transcriptional regulator, MarR family; MarR family transcriptional regulator 4221724..4222221 Polaromonas naphthalenivorans CJ2 4688191 YP_984174.1 CDS Pnap_3958 NC_008781.1 4222366 4223040 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4687 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4222366..4223040 Polaromonas naphthalenivorans CJ2 4688132 YP_984175.1 CDS Pnap_3959 NC_008781.1 4223057 4224502 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: pol:Bpro_4688 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4223057..4224502 Polaromonas naphthalenivorans CJ2 4687797 YP_984176.1 CDS Pnap_3960 NC_008781.1 4224633 4225574 D PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: pol:Bpro_4701 peptidase C26; peptidase C26 4224633..4225574 Polaromonas naphthalenivorans CJ2 4688070 YP_984177.1 CDS Pnap_3961 NC_008781.1 4225808 4228039 D KEGG: sil:SPO1521 regulatory protein, putative; regulatory protein 4225808..4228039 Polaromonas naphthalenivorans CJ2 4686588 YP_984178.1 CDS Pnap_3962 NC_008781.1 4228036 4229019 D PFAM: ApbE family lipoprotein; KEGG: rpc:RPC_0433 twin-arginine translocation pathway signal; ApbE family lipoprotein 4228036..4229019 Polaromonas naphthalenivorans CJ2 4688068 YP_984179.1 CDS Pnap_3963 NC_008781.1 4229131 4232103 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(4229131..4232103) Polaromonas naphthalenivorans CJ2 4687732 YP_984180.1 CDS Pnap_3964 NC_008781.1 4232301 4232834 D PFAM: nuclear protein SET; KEGG: pol:Bpro_4715 nuclear protein SET; nuclear protein SET 4232301..4232834 Polaromonas naphthalenivorans CJ2 4688002 YP_984181.1 CDS Pnap_3965 NC_008781.1 4232842 4233768 D TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: pol:Bpro_4716 biotin--acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase 4232842..4233768 Polaromonas naphthalenivorans CJ2 4687735 YP_984182.1 CDS Pnap_3966 NC_008781.1 4233762 4234451 D KEGG: pol:Bpro_4717 putative signal peptide protein; putative signal peptide protein 4233762..4234451 Polaromonas naphthalenivorans CJ2 4687969 YP_984183.1 CDS Pnap_3967 NC_008781.1 4234547 4235185 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YpfH complement(4234547..4235185) Polaromonas naphthalenivorans CJ2 4687968 YP_984184.1 CDS Pnap_3968 NC_008781.1 4235411 4235887 D KEGG: pol:Bpro_4719 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 4235411..4235887 Polaromonas naphthalenivorans CJ2 4687243 YP_984185.1 CDS Pnap_3969 NC_008781.1 4236077 4236367 D KEGG: pol:Bpro_4720 hypothetical protein; hypothetical protein 4236077..4236367 Polaromonas naphthalenivorans CJ2 4687226 YP_984186.1 CDS Pnap_3970 NC_008781.1 4236402 4237598 D PFAM: NnrS family protein; KEGG: pol:Bpro_4727 NnrS; NnrS family protein 4236402..4237598 Polaromonas naphthalenivorans CJ2 4687941 YP_984187.1 CDS Pnap_3971 NC_008781.1 4237858 4238178 D hypothetical protein 4237858..4238178 Polaromonas naphthalenivorans CJ2 4687440 YP_984188.1 CDS Pnap_3972 NC_008781.1 4238250 4238714 R KEGG: ath:At1g26250 proline-rich extensin, putative; hypothetical protein complement(4238250..4238714) Polaromonas naphthalenivorans CJ2 4687415 YP_984189.1 CDS Pnap_3973 NC_008781.1 4238977 4239858 D KEGG: ecc:c0818 tolA protein; tolA protein 4238977..4239858 Polaromonas naphthalenivorans CJ2 4687207 YP_984190.1 CDS Pnap_3974 NC_008781.1 4240020 4241843 D KEGG: rfr:Rfer_4005 hypothetical protein; hypothetical protein 4240020..4241843 Polaromonas naphthalenivorans CJ2 4687389 YP_984191.1 CDS Pnap_3975 NC_008781.1 4241850 4242779 D hypothetical protein 4241850..4242779 Polaromonas naphthalenivorans CJ2 4687195 YP_984192.1 CDS Pnap_3976 NC_008781.1 4242776 4244515 D KEGG: xac:XAC0147 hypothetical protein; hypothetical protein 4242776..4244515 Polaromonas naphthalenivorans CJ2 4687203 YP_984193.1 CDS Pnap_3977 NC_008781.1 4244727 4245302 R KEGG: pol:Bpro_4762 hypothetical protein; hypothetical protein complement(4244727..4245302) Polaromonas naphthalenivorans CJ2 4687376 YP_984194.1 CDS Pnap_3978 NC_008781.1 4245303 4245779 R TIGRFAM: DNA binding domain, excisionase family; KEGG: pol:Bpro_4763 excisionase/Xis, DNA-binding; DNA-binding domain-containing protein complement(4245303..4245779) Polaromonas naphthalenivorans CJ2 4687170 YP_984195.1 CDS Pnap_3979 NC_008781.1 4246000 4246275 D hypothetical protein 4246000..4246275 Polaromonas naphthalenivorans CJ2 4687347 YP_984196.1 CDS Pnap_3980 NC_008781.1 4246576 4247802 D PFAM: filamentation induced by cAMP protein Fic; KEGG: pol:Bpro_4758 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 4246576..4247802 Polaromonas naphthalenivorans CJ2 4687171 YP_984197.1 CDS Pnap_3982 NC_008781.1 4248627 4248947 D KEGG: pol:Bpro_4751 hypothetical protein; hypothetical protein 4248627..4248947 Polaromonas naphthalenivorans CJ2 4688196 YP_984198.1 CDS Pnap_3983 NC_008781.1 4249222 4249641 D KEGG: bbr:BB1298 hypothetical protein; hypothetical protein 4249222..4249641 Polaromonas naphthalenivorans CJ2 4687165 YP_984199.1 CDS Pnap_3984 NC_008781.1 4249744 4250511 D PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rfr:Rfer_4017 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 4249744..4250511 Polaromonas naphthalenivorans CJ2 4687314 YP_984200.1 CDS Pnap_3985 NC_008781.1 4250533 4251171 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rba:RB12285 conserved hypothetical protein-putative dimethyladenosine transferase (rRNA methylation); type 11 methyltransferase complement(4250533..4251171) Polaromonas naphthalenivorans CJ2 4687276 YP_984201.1 CDS Pnap_3986 NC_008781.1 4251561 4252391 D PFAM: transglutaminase domain protein; KEGG: hch:HCH_03352 transglutaminase-like enzyme, putative cysteine protease; transglutaminase domain-containing protein 4251561..4252391 Polaromonas naphthalenivorans CJ2 4687206 YP_984202.1 CDS Pnap_3987 NC_008781.1 4252471 4254627 R KEGG: rfr:Rfer_3022 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane complement(4252471..4254627) Polaromonas naphthalenivorans CJ2 4686691 YP_984203.1 CDS Pnap_3988 NC_008781.1 4254750 4255964 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ret:RHE_CH02674 probable oxidoreductase protein; short-chain dehydrogenase/reductase SDR 4254750..4255964 Polaromonas naphthalenivorans CJ2 4686678 YP_984204.1 CDS Pnap_3989 NC_008781.1 4256132 4256914 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR; KEGG: pol:Bpro_4767 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(4256132..4256914) Polaromonas naphthalenivorans CJ2 4686673 YP_984205.1 CDS Pnap_3990 NC_008781.1 4257077 4257973 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4768 transcriptional regulator, LysR family; LysR family transcriptional regulator 4257077..4257973 Polaromonas naphthalenivorans CJ2 4686241 YP_984206.1 CDS Pnap_3991 NC_008781.1 4258147 4258614 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rfr:Rfer_4110 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 4258147..4258614 Polaromonas naphthalenivorans CJ2 4686233 YP_984207.1 CDS Pnap_3992 NC_008781.1 4258697 4259068 R PFAM: Collagen triple helix repeat; KEGG: rfr:Rfer_0080 collagen triple helix protein; triple helix repeat-containing collagen complement(4258697..4259068) Polaromonas naphthalenivorans CJ2 4686647 YP_984208.1 CDS Pnap_3993 NC_008781.1 4259358 4260458 D PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_4775 pirin-like; pirin domain-containing protein 4259358..4260458 Polaromonas naphthalenivorans CJ2 4686602 YP_984209.1 CDS Pnap_3994 NC_008781.1 4260639 4261079 D PFAM: response regulator receiver; KEGG: pol:Bpro_0607 response regulator receiver domain protein (CheY-like); response regulator receiver protein 4260639..4261079 Polaromonas naphthalenivorans CJ2 4686200 YP_984210.1 CDS Pnap_3995 NC_008781.1 4261305 4262036 D PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4502 transcriptional regulator, TetR family; TetR family transcriptional regulator 4261305..4262036 Polaromonas naphthalenivorans CJ2 4686489 YP_984211.1 CDS Pnap_3996 NC_008781.1 4262110 4262556 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 4262110..4262556 Polaromonas naphthalenivorans CJ2 4686578 YP_984212.1 CDS Pnap_3997 NC_008781.1 4262581 4263339 R KEGG: bur:Bcep18194_C7441 hypothetical protein; hypothetical protein complement(4262581..4263339) Polaromonas naphthalenivorans CJ2 4686542 YP_984213.1 CDS Pnap_4000 NC_008781.1 4263776 4264228 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rfr:Rfer_2436 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein 4263776..4264228 Polaromonas naphthalenivorans CJ2 4688065 YP_984214.1 CDS Pnap_4001 NC_008781.1 4264289 4266526 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_2631 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(4264289..4266526) Polaromonas naphthalenivorans CJ2 4686480 YP_984215.1 CDS Pnap_4002 NC_008781.1 4266583 4267041 D PFAM: regulatory protein, MerR; KEGG: pol:Bpro_3479 transcriptional regulator, MerR family; MerR family transcriptional regulator 4266583..4267041 Polaromonas naphthalenivorans CJ2 4686442 YP_984216.1 CDS Pnap_4003 NC_008781.1 4267070 4268272 R PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A1849 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4267070..4268272) Polaromonas naphthalenivorans CJ2 4686430 YP_984217.1 CDS Pnap_4004 NC_008781.1 4268421 4269308 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RSc1152 probable transcription regulator protein; LysR family transcriptional regulator 4268421..4269308 Polaromonas naphthalenivorans CJ2 4686400 YP_984218.1 CDS Pnap_4005 NC_008781.1 4269356 4270468 D KEGG: rpd:RPD_1710 hypothetical protein; hypothetical protein 4269356..4270468 Polaromonas naphthalenivorans CJ2 4686366 YP_984219.1 CDS Pnap_4006 NC_008781.1 4270757 4270993 R KEGG: pol:Bpro_4808 hypothetical protein; hypothetical protein complement(4270757..4270993) Polaromonas naphthalenivorans CJ2 4686320 YP_984220.1 CDS Pnap_4007 NC_008781.1 4271140 4272414 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 4271140..4272414 Polaromonas naphthalenivorans CJ2 4686318 YP_984221.1 CDS Pnap_4008 NC_008781.1 4272489 4273151 R KEGG: mma:MM3344 transposase; transposase complement(4272489..4273151) Polaromonas naphthalenivorans CJ2 4690194 YP_984222.1 CDS Pnap_4009 NC_008781.1 4273148 4273621 R KEGG: mma:MM3343 transposase; transposase complement(4273148..4273621) Polaromonas naphthalenivorans CJ2 4687046 YP_984223.1 CDS Pnap_4010 NC_008781.1 4273692 4274552 D KEGG: psb:Psyr_2657 hypothetical protein; hypothetical protein 4273692..4274552 Polaromonas naphthalenivorans CJ2 4688807 YP_984224.1 CDS Pnap_4011 NC_008781.1 4274678 4276150 D PFAM: ribonuclease II; RNA binding S1 domain protein; KEGG: pol:Bpro_2925 exoribonuclease II; exoribonuclease II 4274678..4276150 Polaromonas naphthalenivorans CJ2 4687843 YP_984225.1 CDS Pnap_4012 NC_008781.1 4276274 4276549 D PFAM: protein of unknown function DUF1232; KEGG: pol:Bpro_2926 hypothetical protein; hypothetical protein 4276274..4276549 Polaromonas naphthalenivorans CJ2 4687812 YP_984226.1 CDS Pnap_4013 NC_008781.1 4276806 4278422 D PFAM: surface antigen (D15); Polypeptide-transport-associated domain protein, ShlB-type; KEGG: pfl:PFL_2820 outer membrane protein, OMP85 family; polypeptide-transport-associated domain-containing protein 4276806..4278422 Polaromonas naphthalenivorans CJ2 4686716 YP_984227.1 CDS Pnap_4014 NC_008781.1 4278440 4281310 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: rso:RS03099 putative hemagglutinin-related protein; filamentous hemagglutinin outer membrane protein 4278440..4281310 Polaromonas naphthalenivorans CJ2 4689981 YP_984228.1 CDS Pnap_4015 NC_008781.1 4281323 4282174 D hypothetical protein 4281323..4282174 Polaromonas naphthalenivorans CJ2 4689136 YP_984229.1 CDS Pnap_4016 NC_008781.1 4282221 4283174 R KEGG: pol:Bpro_2929 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase complement(4282221..4283174) Polaromonas naphthalenivorans CJ2 4689851 YP_984230.1 CDS Pnap_4017 NC_008781.1 4283305 4283619 D PFAM: protein of unknown function DUF891; KEGG: xft:PD1176 hypothetical protein; hypothetical protein 4283305..4283619 Polaromonas naphthalenivorans CJ2 4686719 YP_984231.1 CDS Pnap_4018 NC_008781.1 4283623 4283943 D KEGG: rso:RS05545 hypothetical protein; putative transcriptional regulator 4283623..4283943 Polaromonas naphthalenivorans CJ2 4687231 YP_984232.1 CDS Pnap_4019 NC_008781.1 4284159 4285505 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 4284159..4285505 Polaromonas naphthalenivorans CJ2 4686082 YP_984233.1 CDS Pnap_4020 NC_008781.1 4285556 4286863 D catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 4285556..4286863 Polaromonas naphthalenivorans CJ2 4690002 YP_984234.1 CDS Pnap_4021 NC_008781.1 4286928 4288373 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 4286928..4288373 Polaromonas naphthalenivorans CJ2 4686123 YP_984235.1 CDS Pnap_4022 NC_008781.1 4288398 4289654 D KEGG: bcn:Bcen_5723 amidase, hydantoinase/carbamoylase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; amidase 4288398..4289654 Polaromonas naphthalenivorans CJ2 4686540 YP_984236.1 CDS Pnap_4023 NC_008781.1 4289768 4291231 D hypothetical protein 4289768..4291231 Polaromonas naphthalenivorans CJ2 4688190 YP_984237.1 CDS Pnap_4024 NC_008781.1 4291549 4291725 D KEGG: cps:CPS_0382 hypothetical protein; hypothetical protein 4291549..4291725 Polaromonas naphthalenivorans CJ2 4686321 YP_984238.1 CDS Pnap_4025 NC_008781.1 4292306 4292692 D KEGG: mca:MCA1565 protozoan/cyanobacterial globin family protein; globin family protein 4292306..4292692 Polaromonas naphthalenivorans CJ2 4689883 YP_984239.1 CDS Pnap_4026 NC_008781.1 4292732 4293106 R hypothetical protein complement(4292732..4293106) Polaromonas naphthalenivorans CJ2 4689009 YP_984240.1 CDS Pnap_4027 NC_008781.1 4293501 4293986 R PFAM: Calcium/calmodulin dependent protein kinase II, association-domain protein; KEGG: reu:Reut_A2135 conserved hypothetical protein 2246; calcium/calmodulin dependent protein kinase II association-domain-containing protein complement(4293501..4293986) Polaromonas naphthalenivorans CJ2 4687820 YP_984241.1 CDS Pnap_4028 NC_008781.1 4294144 4294674 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: pol:Bpro_1399 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase complement(4294144..4294674) Polaromonas naphthalenivorans CJ2 4690006 YP_984242.1 CDS Pnap_4029 NC_008781.1 4294900 4296168 R PFAM: cytochrome P450; KEGG: pol:Bpro_1581 cytochrome P450; cytochrome P450 complement(4294900..4296168) Polaromonas naphthalenivorans CJ2 4688169 YP_984243.1 CDS Pnap_4030 NC_008781.1 4296168 4297205 R KEGG: pol:Bpro_1580 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(4296168..4297205) Polaromonas naphthalenivorans CJ2 4689442 YP_984244.1 CDS Pnap_4031 NC_008781.1 4297239 4297961 R TIGRFAM: dethiobiotin synthase; KEGG: bcn:Bcen_2319 dethiobiotin synthase; dethiobiotin synthase complement(4297239..4297961) Polaromonas naphthalenivorans CJ2 4687570 YP_984245.1 CDS Pnap_4032 NC_008781.1 4297958 4299190 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(4297958..4299190) Polaromonas naphthalenivorans CJ2 4686329 YP_984246.1 CDS Pnap_4034 NC_008781.1 4300919 4301395 R KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 complement(4300919..4301395) Polaromonas naphthalenivorans CJ2 4688141 YP_984247.1 CDS Pnap_4035 NC_008781.1 4301415 4301873 R KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein complement(4301415..4301873) Polaromonas naphthalenivorans CJ2 4687016 YP_984248.1 CDS Pnap_4036 NC_008781.1 4301949 4302224 R hypothetical protein complement(4301949..4302224) Polaromonas naphthalenivorans CJ2 4687765 YP_984249.1 CDS Pnap_4037 NC_008781.1 4302526 4303185 R PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; KEGG: reu:Reut_B3988 regulatory protein, TetR; TetR family transcriptional regulator complement(4302526..4303185) Polaromonas naphthalenivorans CJ2 4686550 YP_984250.1 CDS Pnap_4038 NC_008781.1 4303280 4304275 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0374 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4303280..4304275) Polaromonas naphthalenivorans CJ2 4688031 YP_984251.1 CDS Pnap_4039 NC_008781.1 4304383 4305732 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 4304383..4305732 Polaromonas naphthalenivorans CJ2 4687503 YP_984252.1 CDS Pnap_4040 NC_008781.1 4306250 4307410 D KEGG: psp:PSPPH_2727 sugar-binding transcriptional regulator, LacI family; sugar ABC transporter periplasmic protein 4306250..4307410 Polaromonas naphthalenivorans CJ2 4686577 YP_984253.1 CDS Pnap_4041 NC_008781.1 4307485 4308480 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 4307485..4308480 Polaromonas naphthalenivorans CJ2 4687317 YP_984254.1 CDS Pnap_4042 NC_008781.1 4308570 4309562 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 4308570..4309562 Polaromonas naphthalenivorans CJ2 4686148 YP_984255.1 CDS Pnap_4043 NC_008781.1 4309559 4310542 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMb21438 putative C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide; TRAP dicarboxylate transporter subunit DctP 4309559..4310542 Polaromonas naphthalenivorans CJ2 4687714 YP_984256.1 CDS Pnap_4044 NC_008781.1 4310629 4312587 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: pol:Bpro_4822 histidine kinase; integral membrane sensor signal transduction histidine kinase 4310629..4312587 Polaromonas naphthalenivorans CJ2 4686772 YP_984257.1 CDS Pnap_4045 NC_008781.1 4312584 4313720 D PFAM: domain of unknown function DUF1745; KEGG: bte:BTH_II0732 hypothetical protein; hypothetical protein 4312584..4313720 Polaromonas naphthalenivorans CJ2 4688992 YP_984258.1 CDS Pnap_4046 NC_008781.1 4313707 4315218 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-4 domain protein; KEGG: pol:Bpro_4822 histidine kinase; PAS/PAC sensor signal transduction histidine kinase 4313707..4315218 Polaromonas naphthalenivorans CJ2 4689068 YP_984259.1 CDS Pnap_4047 NC_008781.1 4315215 4316510 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4824 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 4315215..4316510 Polaromonas naphthalenivorans CJ2 4687511 YP_984260.1 CDS Pnap_4048 NC_008781.1 4316507 4317802 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4824 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 4316507..4317802 Polaromonas naphthalenivorans CJ2 4687142 YP_984261.1 CDS Pnap_4049 NC_008781.1 4317799 4319460 D KEGG: pol:Bpro_4825 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 4317799..4319460 Polaromonas naphthalenivorans CJ2 4687509 YP_984262.1 CDS Pnap_4050 NC_008781.1 4319520 4320632 D KEGG: sme:SMa0203 putative ABC transporter; putative ABC transporter 4319520..4320632 Polaromonas naphthalenivorans CJ2 4689573 YP_984263.1 CDS Pnap_4051 NC_008781.1 4320629 4322116 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll4203 sugar ABC transporter, ATP-binding protein; ABC transporter-like protein 4320629..4322116 Polaromonas naphthalenivorans CJ2 4687682 YP_984264.1 CDS Pnap_4052 NC_008781.1 4322109 4323068 D PFAM: inner-membrane translocator; KEGG: mlo:mll4202 sugar ABC transporter, permease; inner-membrane translocator 4322109..4323068 Polaromonas naphthalenivorans CJ2 4688789 YP_984265.1 CDS Pnap_4053 NC_008781.1 4323104 4324009 D PFAM: inner-membrane translocator; KEGG: atc:AGR_L_1646 ribose transport protein rbsC; inner-membrane translocator 4323104..4324009 Polaromonas naphthalenivorans CJ2 4687889 YP_984266.1 CDS Pnap_4054 NC_008781.1 4324044 4329314 D PFAM: protein kinase; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; SMART: serine/threonine protein kinase; KEGG: mxa:MXAN_4053 sensor histidine kinase; ATPase domain-containing protein 4324044..4329314 Polaromonas naphthalenivorans CJ2 4687866 YP_984267.1 CDS Pnap_4055 NC_008781.1 4329582 4330580 R TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: pol:Bpro_4826 glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase complement(4329582..4330580) Polaromonas naphthalenivorans CJ2 4686971 YP_984268.1 CDS Pnap_4056 NC_008781.1 4330644 4332689 R TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: pol:Bpro_4827 transketolase; transketolase complement(4330644..4332689) Polaromonas naphthalenivorans CJ2 4689652 YP_984269.1 CDS Pnap_4057 NC_008781.1 4332893 4333630 D PFAM: Nucleotidyl transferase; KEGG: rfr:Rfer_0085 nucleotidyl transferase; nucleotidyl transferase 4332893..4333630 Polaromonas naphthalenivorans CJ2 4689783 YP_984270.1 CDS Pnap_4058 NC_008781.1 4333645 4335066 D PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: pol:Bpro_4829 peptidase M24; peptidase M24 4333645..4335066 Polaromonas naphthalenivorans CJ2 4690186 YP_984271.1 CDS Pnap_4059 NC_008781.1 4335118 4335510 D PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: dar:Daro_1103 glutaredoxin family protein; glutaredoxin 4335118..4335510 Polaromonas naphthalenivorans CJ2 4690079 YP_984272.1 CDS Pnap_4060 NC_008781.1 4335553 4335936 R PFAM: glutaredoxin; KEGG: rfr:Rfer_0010 glutaredoxin; glutaredoxin complement(4335553..4335936) Polaromonas naphthalenivorans CJ2 4689859 YP_984273.1 CDS Pnap_4061 NC_008781.1 4336221 4336658 D PFAM: CBS domain containing protein; KEGG: pol:Bpro_2185 putative signal transduction protein with CBS domains; signal-transduction protein 4336221..4336658 Polaromonas naphthalenivorans CJ2 4688148 YP_984274.1 CDS Pnap_4062 NC_008781.1 4336695 4337453 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1504 ABC transporter related; ABC transporter-like protein complement(4336695..4337453) Polaromonas naphthalenivorans CJ2 4687424 YP_984275.1 CDS Pnap_4063 NC_008781.1 4337466 4338116 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0163 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit complement(4337466..4338116) Polaromonas naphthalenivorans CJ2 4687828 YP_984276.1 CDS Pnap_4064 NC_008781.1 4338133 4338789 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0162 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit complement(4338133..4338789) Polaromonas naphthalenivorans CJ2 4689257 YP_984277.1 CDS Pnap_4065 NC_008781.1 4338898 4339692 R PFAM: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_0161 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(4338898..4339692) Polaromonas naphthalenivorans CJ2 4686583 YP_984278.1 CDS Pnap_4066 NC_008781.1 4339915 4340826 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_1500 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 4339915..4340826 Polaromonas naphthalenivorans CJ2 4686766 YP_984279.1 CDS Pnap_4067 NC_008781.1 4340848 4342071 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 4340848..4342071 Polaromonas naphthalenivorans CJ2 4688990 YP_984280.1 CDS Pnap_4068 NC_008781.1 4342068 4343312 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 4342068..4343312 Polaromonas naphthalenivorans CJ2 4689055 YP_984281.1 CDS Pnap_4069 NC_008781.1 4343352 4344317 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_1497 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4343352..4344317 Polaromonas naphthalenivorans CJ2 4688760 YP_984282.1 CDS putA NC_008781.1 4344490 4348458 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(4344490..4348458) Polaromonas naphthalenivorans CJ2 4689536 YP_984283.1 CDS Pnap_4071 NC_008781.1 4348842 4351172 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 4348842..4351172 Polaromonas naphthalenivorans CJ2 4687238 YP_984284.1 CDS Pnap_4072 NC_008781.1 4351669 4352094 D KEGG: pol:Bpro_4860 hypothetical protein; hypothetical protein 4351669..4352094 Polaromonas naphthalenivorans CJ2 4686505 YP_984285.1 CDS Pnap_4073 NC_008781.1 4352079 4352318 R hypothetical protein complement(4352079..4352318) Polaromonas naphthalenivorans CJ2 4687825 YP_984286.1 CDS ksgA NC_008781.1 4352364 4353203 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(4352364..4353203) Polaromonas naphthalenivorans CJ2 4686071 YP_984287.1 CDS Pnap_4075 NC_008781.1 4353200 4354609 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_4862 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(4353200..4354609) Polaromonas naphthalenivorans CJ2 4686753 YP_984288.1 CDS Pnap_4076 NC_008781.1 4354602 4357046 R PFAM: Organic solvent tolerance protein; KEGG: pol:Bpro_4863 organic solvent tolerance protein; organic solvent tolerance protein complement(4354602..4357046) Polaromonas naphthalenivorans CJ2 4686553 YP_984289.1 CDS Pnap_4077 NC_008781.1 4357149 4358231 D PFAM: aminoglycoside phosphotransferase; KEGG: pol:Bpro_4864 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 4357149..4358231 Polaromonas naphthalenivorans CJ2 4686232 YP_984290.1 CDS Pnap_4078 NC_008781.1 4358323 4359075 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 4358323..4359075 Polaromonas naphthalenivorans CJ2 4688519 YP_984291.1 CDS Pnap_4079 NC_008781.1 4359135 4359935 R PFAM: amidohydrolase 2; KEGG: rso:RS05190 probable hydrolase transmembrane protein; amidohydrolase 2 complement(4359135..4359935) Polaromonas naphthalenivorans CJ2 4688640 YP_984292.1 CDS Pnap_4080 NC_008781.1 4359966 4360733 D PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pol:Bpro_3370 transcriptional regulator, GntR family; UbiC transcription regulator-associated domain-containing protein 4359966..4360733 Polaromonas naphthalenivorans CJ2 4690013 YP_984293.1 CDS Pnap_4081 NC_008781.1 4360780 4361787 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3798 hypothetical protein; hypothetical protein 4360780..4361787 Polaromonas naphthalenivorans CJ2 4686136 YP_984294.1 CDS Pnap_4082 NC_008781.1 4361859 4362854 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1449 twin-arginine translocation pathway signal; hypothetical protein 4361859..4362854 Polaromonas naphthalenivorans CJ2 4689497 YP_984295.1 CDS Pnap_4083 NC_008781.1 4362976 4364451 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_4868 peptidase M20; peptidase M20 complement(4362976..4364451) Polaromonas naphthalenivorans CJ2 4688118 YP_984296.1 CDS Pnap_4084 NC_008781.1 4364542 4365282 R PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; KEGG: rso:RSc3161 probable two component response regulator transcription regulator protein; two component LuxR family transcriptional regulator complement(4364542..4365282) Polaromonas naphthalenivorans CJ2 4687666 YP_984297.1 CDS Pnap_4085 NC_008781.1 4365539 4367497 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bbr:BB2739 probable two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4365539..4367497) Polaromonas naphthalenivorans CJ2 4689649 YP_984298.1 CDS Pnap_4086 NC_008781.1 4367746 4370757 D PFAM: pentapeptide repeat protein; KEGG: ana:all3114 hypothetical protein; pentapeptide repeat-containing protein 4367746..4370757 Polaromonas naphthalenivorans CJ2 4686153 YP_984299.1 CDS Pnap_4087 NC_008781.1 4370812 4374099 D hypothetical protein 4370812..4374099 Polaromonas naphthalenivorans CJ2 4689273 YP_984300.1 CDS psd NC_008781.1 4374139 4375008 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(4374139..4375008) Polaromonas naphthalenivorans CJ2 4687070 YP_984301.1 CDS Pnap_4089 NC_008781.1 4375075 4375263 R PFAM: Heavy metal transport/detoxification protein; KEGG: pol:Bpro_4871 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(4375075..4375263) Polaromonas naphthalenivorans CJ2 4689080 YP_984302.1 CDS Pnap_4090 NC_008781.1 4375468 4377909 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_4872 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 4375468..4377909 Polaromonas naphthalenivorans CJ2 4686671 YP_984303.1 CDS Pnap_4091 NC_008781.1 4377906 4378322 D TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: pol:Bpro_4873 transcriptional regulator, MerR family; MerR family transcriptional regulator 4377906..4378322 Polaromonas naphthalenivorans CJ2 4686688 YP_984304.1 CDS Pnap_4092 NC_008781.1 4378552 4378800 R hypothetical protein complement(4378552..4378800) Polaromonas naphthalenivorans CJ2 4687357 YP_984305.1 CDS Pnap_4093 NC_008781.1 4379141 4379512 R hypothetical protein complement(4379141..4379512) Polaromonas naphthalenivorans CJ2 4688690 YP_984306.1 CDS Pnap_4095 NC_008781.1 4379823 4380980 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: noc:Noc_1587 transposase; IS605 family transposase OrfB complement(4379823..4380980) Polaromonas naphthalenivorans CJ2 4688084 YP_984307.1 CDS Pnap_4096 NC_008781.1 4381236 4382120 R PFAM: transposase, IS4 family protein; KEGG: neu:NE2504 transposase IS4 family; transposase, IS4 family protein complement(4381236..4382120) Polaromonas naphthalenivorans CJ2 4686286 YP_984308.1 CDS Pnap_4097 NC_008781.1 4382303 4382956 D PFAM: 2OG-Fe(II) oxygenase; KEGG: pol:Bpro_4875 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 4382303..4382956 Polaromonas naphthalenivorans CJ2 4686721 YP_984309.1 CDS Pnap_4098 NC_008781.1 4382968 4383822 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rfr:Rfer_0443 hydroxypyruvate isomerase; hydroxypyruvate isomerase complement(4382968..4383822) Polaromonas naphthalenivorans CJ2 4686108 YP_984310.1 CDS Pnap_4099 NC_008781.1 4383829 4385691 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pol:Bpro_4885 sulphate transporter; sulfate transporter complement(4383829..4385691) Polaromonas naphthalenivorans CJ2 4687296 YP_984311.1 CDS Pnap_4100 NC_008781.1 4385742 4387106 R TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pol:Bpro_4886 chromate transporter; chromate transporter complement(4385742..4387106) Polaromonas naphthalenivorans CJ2 4687242 YP_984312.1 CDS Pnap_4101 NC_008781.1 4387108 4387716 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_4888 methionine biosynthesis MetW; methionine biosynthesis protein MetW complement(4387108..4387716) Polaromonas naphthalenivorans CJ2 4687808 YP_984313.1 CDS metX NC_008781.1 4387713 4388822 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(4387713..4388822) Polaromonas naphthalenivorans CJ2 4688687 YP_984314.1 CDS Pnap_4103 NC_008781.1 4389011 4389577 R PFAM: protein of unknown function UPF0016; KEGG: pol:Bpro_4890 protein of unknown function UPF0016; hypothetical protein complement(4389011..4389577) Polaromonas naphthalenivorans CJ2 4690210 YP_984315.1 CDS Pnap_4104 NC_008781.1 4389963 4391165 D PFAM: Rh family protein/ammonium transporter; KEGG: pol:Bpro_4891 Rh-like protein/ammonium transporter; Rh family protein/ammonium transporter 4389963..4391165 Polaromonas naphthalenivorans CJ2 4689105 YP_984316.1 CDS Pnap_4105 NC_008781.1 4391376 4391834 D PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 4391376..4391834 Polaromonas naphthalenivorans CJ2 4687049 YP_984317.1 CDS Pnap_4106 NC_008781.1 4391993 4392706 R PFAM: protein of unknown function DUF1239; KEGG: pol:Bpro_4896 protein of unknown function DUF1239; hypothetical protein complement(4391993..4392706) Polaromonas naphthalenivorans CJ2 4686169 YP_984318.1 CDS Pnap_4107 NC_008781.1 4392703 4393320 R TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pol:Bpro_4897 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(4392703..4393320) Polaromonas naphthalenivorans CJ2 4690196 YP_984319.1 CDS Pnap_4108 NC_008781.1 4393322 4394314 R KEGG: pol:Bpro_4898 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(4393322..4394314) Polaromonas naphthalenivorans CJ2 4686364 YP_984320.1 CDS Pnap_4109 NC_008781.1 4394405 4396390 D PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_4900 potassium efflux system protein; sodium/hydrogen exchanger 4394405..4396390 Polaromonas naphthalenivorans CJ2 4688287 YP_984321.1 CDS Pnap_4110 NC_008781.1 4396457 4397137 R KEGG: pol:Bpro_4902 hypothetical protein; hypothetical protein complement(4396457..4397137) Polaromonas naphthalenivorans CJ2 4688935 YP_984322.1 CDS Pnap_4111 NC_008781.1 4397306 4397797 R PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_4903 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein complement(4397306..4397797) Polaromonas naphthalenivorans CJ2 4686186 YP_984323.1 CDS trmE NC_008781.1 4397951 4399387 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(4397951..4399387) Polaromonas naphthalenivorans CJ2 4687178 YP_984324.1 CDS Pnap_4113 NC_008781.1 4399442 4401151 R PFAM: 60 kDa inner membrane insertion protein; KEGG: pol:Bpro_4905 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein complement(4399442..4401151) Polaromonas naphthalenivorans CJ2 4690091 YP_984325.1 CDS Pnap_4114 NC_008781.1 4401148 4401465 R PFAM: protein of unknown function DUF37; KEGG: pol:Bpro_4906 protein of unknown function DUF37; hypothetical protein complement(4401148..4401465) Polaromonas naphthalenivorans CJ2 4688658 YP_984326.1 CDS Pnap_4115 NC_008781.1 4401462 4401794 R KEGG: pol:Bpro_4907 hypothetical protein; hypothetical protein complement(4401462..4401794) Polaromonas naphthalenivorans CJ2 4687663 YP_984327.1 CDS rpmH NC_008781.1 4401930 4402064 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(4401930..4402064) Polaromonas naphthalenivorans CJ2 4690225 YP_984328.1 CDS dnaA NC_008781.1 4402850 4404247 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 4402850..4404247 Polaromonas naphthalenivorans CJ2 4690222 YP_984329.1 CDS Pnap_4118 NC_008781.1 4404522 4405628 D KEGG: pol:Bpro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 4404522..4405628 Polaromonas naphthalenivorans CJ2 4686367 YP_984330.1 CDS Pnap_4119 NC_008781.1 4405728 4408352 D KEGG: pol:Bpro_0003 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 4405728..4408352 Polaromonas naphthalenivorans CJ2 4686454 YP_984331.1 CDS Pnap_4120 NC_008781.1 4408360 4408971 D KEGG: pol:Bpro_0009 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA-directed DNA polymerase 4408360..4408971 Polaromonas naphthalenivorans CJ2 4686512 YP_984332.1 CDS Pnap_4121 NC_008781.1 4409056 4410153 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 4409056..4410153 Polaromonas naphthalenivorans CJ2 4686188 Pnap_R0061 tRNA Pnap_R0061 NC_008758.1 143169 143245 R tRNA-Met complement(143169..143245) Polaromonas naphthalenivorans CJ2 4685518 Pnap_R0063 tRNA Pnap_R0063 NC_008759.1 141203 141279 D tRNA-Met 141203..141279 Polaromonas naphthalenivorans CJ2 4685722 Pnap_R0062 tRNA Pnap_R0062 NC_008760.1 112094 112170 R tRNA-Met complement(112094..112170) Polaromonas naphthalenivorans CJ2 4685922 Pnap_R0002 tRNA Pnap_R0002 NC_008781.1 265115 265190 D tRNA-Arg 265115..265190 Polaromonas naphthalenivorans CJ2 4688933 Pnap_R0003 tRNA Pnap_R0003 NC_008781.1 343179 343255 D tRNA-Met 343179..343255 Polaromonas naphthalenivorans CJ2 4688667 Pnap_R0005 tRNA Pnap_R0005 NC_008781.1 427076 427152 D tRNA-Ile 427076..427152 Polaromonas naphthalenivorans CJ2 4689183 Pnap_R0006 tRNA Pnap_R0006 NC_008781.1 427181 427256 D tRNA-Ala 427181..427256 Polaromonas naphthalenivorans CJ2 4689208 Pnap_R0009 tRNA Pnap_R0009 NC_008781.1 759510 759585 D tRNA-Thr 759510..759585 Polaromonas naphthalenivorans CJ2 4687988 Pnap_R0010 tRNA Pnap_R0010 NC_008781.1 796908 796984 D tRNA-Pro 796908..796984 Polaromonas naphthalenivorans CJ2 4688109 Pnap_R0011 tRNA Pnap_R0011 NC_008781.1 836741 836817 D tRNA-Arg 836741..836817 Polaromonas naphthalenivorans CJ2 4689216 Pnap_R0012 tRNA Pnap_R0012 NC_008781.1 907832 907906 R tRNA-Arg complement(907832..907906) Polaromonas naphthalenivorans CJ2 4687967 Pnap_R0013 tRNA Pnap_R0013 NC_008781.1 950908 950984 R tRNA-Gln complement(950908..950984) Polaromonas naphthalenivorans CJ2 4688900 Pnap_R0014 tRNA Pnap_R0014 NC_008781.1 963115 963191 D tRNA-Met 963115..963191 Polaromonas naphthalenivorans CJ2 4689388 Pnap_R0015 tRNA Pnap_R0015 NC_008781.1 1021827 1021916 R tRNA-Ser complement(1021827..1021916) Polaromonas naphthalenivorans CJ2 4688315 Pnap_R0016 tRNA Pnap_R0016 NC_008781.1 1131583 1131658 R tRNA-Thr complement(1131583..1131658) Polaromonas naphthalenivorans CJ2 4686920 Pnap_R0017 tRNA Pnap_R0017 NC_008781.1 1162395 1162470 D tRNA-Ala 1162395..1162470 Polaromonas naphthalenivorans CJ2 4687949 Pnap_R0018 tRNA Pnap_R0018 NC_008781.1 1162537 1162612 D tRNA-Glu 1162537..1162612 Polaromonas naphthalenivorans CJ2 4690114 Pnap_R0019 tRNA Pnap_R0019 NC_008781.1 1162693 1162769 D tRNA-Asp 1162693..1162769 Polaromonas naphthalenivorans CJ2 4686269 Pnap_R0020 tRNA Pnap_R0020 NC_008781.1 1162892 1162967 D tRNA-Glu 1162892..1162967 Polaromonas naphthalenivorans CJ2 4686331 Pnap_R0021 tRNA Pnap_R0021 NC_008781.1 1163048 1163124 D tRNA-Asp 1163048..1163124 Polaromonas naphthalenivorans CJ2 4686130 Pnap_R0022 tRNA Pnap_R0022 NC_008781.1 1512447 1512531 D tRNA-Leu 1512447..1512531 Polaromonas naphthalenivorans CJ2 4689197 Pnap_R0023 tRNA Pnap_R0023 NC_008781.1 1721370 1721445 D tRNA-Val 1721370..1721445 Polaromonas naphthalenivorans CJ2 4688225 Pnap_R0024 tRNA Pnap_R0024 NC_008781.1 1723499 1723574 D tRNA-His 1723499..1723574 Polaromonas naphthalenivorans CJ2 4688212 Pnap_R0027 tRNA Pnap_R0027 NC_008781.1 1851311 1851387 D tRNA-Ile 1851311..1851387 Polaromonas naphthalenivorans CJ2 4690111 Pnap_R0028 tRNA Pnap_R0028 NC_008781.1 1851416 1851491 D tRNA-Ala 1851416..1851491 Polaromonas naphthalenivorans CJ2 4690183 Pnap_R0031 tRNA Pnap_R0031 NC_008781.1 1976097 1976172 D tRNA-Asn 1976097..1976172 Polaromonas naphthalenivorans CJ2 4688112 Pnap_R0032 tRNA Pnap_R0032 NC_008781.1 2031833 2031909 D tRNA-Pro 2031833..2031909 Polaromonas naphthalenivorans CJ2 4688271 Pnap_R0033 tRNA Pnap_R0033 NC_008781.1 2031951 2032027 D tRNA-Arg 2031951..2032027 Polaromonas naphthalenivorans CJ2 4688419 Pnap_R0034 tRNA Pnap_R0034 NC_008781.1 2152465 2152554 D tRNA-Ser 2152465..2152554 Polaromonas naphthalenivorans CJ2 4688669 Pnap_R0035 tRNA Pnap_R0035 NC_008781.1 2173508 2173583 R tRNA-Lys complement(2173508..2173583) Polaromonas naphthalenivorans CJ2 4689905 Pnap_R0036 tRNA Pnap_R0036 NC_008781.1 2173594 2173669 R tRNA-Lys complement(2173594..2173669) Polaromonas naphthalenivorans CJ2 4686212 Pnap_R0037 tRNA Pnap_R0037 NC_008781.1 2426393 2426467 R tRNA-Val complement(2426393..2426467) Polaromonas naphthalenivorans CJ2 4687212 Pnap_R0038 tRNA Pnap_R0038 NC_008781.1 2577811 2577895 D tRNA-Leu 2577811..2577895 Polaromonas naphthalenivorans CJ2 4688354 Pnap_R0039 tRNA Pnap_R0039 NC_008781.1 2673898 2673974 R tRNA-Val complement(2673898..2673974) Polaromonas naphthalenivorans CJ2 4686062 Pnap_R0040 tRNA Pnap_R0040 NC_008781.1 2785718 2785791 D tRNA-Gly 2785718..2785791 Polaromonas naphthalenivorans CJ2 4689668 Pnap_R0042 tRNA Pnap_R0042 NC_008781.1 2988726 2988802 R tRNA-Pro complement(2988726..2988802) Polaromonas naphthalenivorans CJ2 4686999 Pnap_R0043 tRNA Pnap_R0043 NC_008781.1 3039526 3039618 R tRNA-Ser complement(3039526..3039618) Polaromonas naphthalenivorans CJ2 4686139 Pnap_R0044 tRNA Pnap_R0044 NC_008781.1 3112867 3112953 R tRNA-Leu complement(3112867..3112953) Polaromonas naphthalenivorans CJ2 4689637 Pnap_R0045 tRNA Pnap_R0045 NC_008781.1 3113043 3113116 R tRNA-Cys complement(3113043..3113116) Polaromonas naphthalenivorans CJ2 4690152 Pnap_R0046 tRNA Pnap_R0046 NC_008781.1 3113177 3113252 R tRNA-Gly complement(3113177..3113252) Polaromonas naphthalenivorans CJ2 4690103 Pnap_R0047 tRNA Pnap_R0047 NC_008781.1 3113334 3113407 R tRNA-Cys complement(3113334..3113407) Polaromonas naphthalenivorans CJ2 4690088 Pnap_R0048 tRNA Pnap_R0048 NC_008781.1 3113467 3113542 R tRNA-Gly complement(3113467..3113542) Polaromonas naphthalenivorans CJ2 4690070 Pnap_R0049 tRNA Pnap_R0049 NC_008781.1 3119726 3119812 R tRNA-Leu complement(3119726..3119812) Polaromonas naphthalenivorans CJ2 4689525 Pnap_R0050 tRNA Pnap_R0050 NC_008781.1 3371931 3372015 D tRNA-Leu 3371931..3372015 Polaromonas naphthalenivorans CJ2 4687383 Pnap_R0051 tRNA Pnap_R0051 NC_008781.1 3531928 3532015 R tRNA-Ser complement(3531928..3532015) Polaromonas naphthalenivorans CJ2 4689153 Pnap_R0052 tRNA Pnap_R0052 NC_008781.1 3570807 3570883 D tRNA-Met 3570807..3570883 Polaromonas naphthalenivorans CJ2 4689747 Pnap_R0054 tRNA Pnap_R0054 NC_008781.1 3860274 3860349 R tRNA-Phe complement(3860274..3860349) Polaromonas naphthalenivorans CJ2 4690169 Pnap_R0055 tRNA Pnap_R0055 NC_008781.1 3881888 3881963 R tRNA-Trp complement(3881888..3881963) Polaromonas naphthalenivorans CJ2 4689569 Pnap_R0056 tRNA Pnap_R0056 NC_008781.1 3883254 3883328 R tRNA-Thr complement(3883254..3883328) Polaromonas naphthalenivorans CJ2 4688643 Pnap_R0057 tRNA Pnap_R0057 NC_008781.1 3883400 3883473 R tRNA-Gly complement(3883400..3883473) Polaromonas naphthalenivorans CJ2 4688656 Pnap_R0058 tRNA Pnap_R0058 NC_008781.1 3883556 3883641 R tRNA-Tyr complement(3883556..3883641) Polaromonas naphthalenivorans CJ2 4687805 Pnap_R0004 rRNA Pnap_R0004 NC_008781.1 425434 426956 D 16S ribosomal RNA 425434..426956 Polaromonas naphthalenivorans CJ2 4686927 Pnap_R0007 rRNA Pnap_R0007 NC_008781.1 427603 430484 D 23S ribosomal RNA 427603..430484 Polaromonas naphthalenivorans CJ2 4690059 Pnap_R0008 rRNA Pnap_R0008 NC_008781.1 430649 430761 D 5S ribosomal RNA 430649..430761 Polaromonas naphthalenivorans CJ2 4689189 Pnap_R0026 rRNA Pnap_R0026 NC_008781.1 1849669 1851191 D 16S ribosomal RNA 1849669..1851191 Polaromonas naphthalenivorans CJ2 4689661 Pnap_R0029 rRNA Pnap_R0029 NC_008781.1 1851838 1854719 D 23S ribosomal RNA 1851838..1854719 Polaromonas naphthalenivorans CJ2 4689645 Pnap_R0030 rRNA Pnap_R0030 NC_008781.1 1854884 1854996 D 5S ribosomal RNA 1854884..1854996 Polaromonas naphthalenivorans CJ2 4689940