-- dump date 20140619_234847 -- class Genbank::CDS -- table cds_note -- id note YP_973154.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rru:Rru_B0010 resolvase YP_973155.1 KEGG: rme:Rmet_6179 transposase Tn3 YP_973156.1 PFAM: transposase, IS4 family protein; KEGG: bte:BTH_II0087 transposase YP_973157.1 PFAM: metallophosphoesterase; KEGG: serine/threonine protein phosphatase, putative YP_973159.1 PFAM: HipA domain protein; KEGG: pol:Bpro_1566 HipA-like YP_973163.1 KEGG: rso:RS02232 hypothetical lipoprotein transmembrane YP_973166.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_C1182 putative phage integrase YP_973167.1 PFAM: protein of unknown function DUF891; KEGG: bxe:Bxe_C1183 hypothetical protein YP_973168.1 KEGG: bxe:Bxe_C1184 predicted transcriptional regulator YP_973169.1 PFAM: OmpW family protein; KEGG: bxe:Bxe_C1185 outer membrane protein (porin), OmpW family YP_973170.1 PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_C1186 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BphD) YP_973171.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_973172.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_973173.1 PFAM: Hydratase/decarboxylase; KEGG: bxe:Bxe_C1189 2-hydroxypenta-2,4-dienoate hydratase (BphH) YP_973174.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_C1190 glutathione S-transferase (BphK) YP_973175.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_C1191 2,3-dihydroxybiphenyl-1,2-dioxygenase (BphC) YP_973176.1 Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate YP_973177.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_C1193 biphenyl 2,3-dioxygenase ferredoxin reductase subunit (BphA4) YP_973178.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_C1194 biphenyl 2,3-dioxygenase ferredoxin subunit (BphA3) YP_973179.1 KEGG: bxe:Bxe_C1195 hypothetical membrane protein, biphenyl pathway YP_973180.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: bxe:Bxe_C1196 biphenyl 2,3-dioxygenase small subunit (BphA2) YP_973181.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_C1197 biphenyl 2,3-dioxygenase alpha subunit (BphA1) YP_973182.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bxe:Bxe_C1198 transcriptional regulator BphR, GntR family YP_973183.1 KEGG: psb:Psyr_2657 hypothetical protein YP_973185.1 PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_1477 protein of unknown function DUF932 YP_973186.1 PFAM: DNA repair protein RadC; KEGG: rso:RSc2620 hypothetical protein YP_973187.1 PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_1478 ParB-like nuclease YP_973188.1 PFAM: protein of unknown function DUF736; KEGG: rso:RSc2613 hypothetical protein YP_973189.1 PFAM: helix-turn-helix domain protein; KEGG: xac:XAC2176 hypothetical protein YP_973190.1 KEGG: rso:RSc2609 probable lipoprotein YP_973191.1 KEGG: zmo:ZMO1936 hypothetical protein YP_973192.1 KEGG: zmo:ZMO1937 hypothetical protein YP_973193.1 KEGG: rso:RSc2606 hypothetical replication initiator and transcription repressor protein YP_973194.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_1486 cobyrinic acid a,c-diamide synthase YP_973195.1 KEGG: rme:Rmet_3022 hypothetical protein YP_973196.1 KEGG: rme:Rmet_1257 hypothetical protein YP_973197.1 KEGG: rme:Rmet_1488 putative conjugal transfer TRAF transmembrane protein YP_973198.1 KEGG: rme:Rmet_1489 hypothetical protein YP_973199.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_5551 transcriptional regulator, TetR family YP_973200.1 PFAM: Late embryogenesis abundant protein; KEGG: pol:Bpro_5552 late embryogenesis abundant protein YP_973201.1 KEGG: pol:Bpro_5553 hypothetical protein YP_973202.1 KEGG: pol:Bpro_5554 hypothetical protein YP_973203.1 PFAM: ABC-1 domain protein; KEGG: pol:Bpro_5555 ABC-1 YP_973204.1 PFAM: Glycosyltransferase 28, C-terminal domain; KEGG: pol:Bpro_5556 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase-like YP_973205.1 PFAM: Patatin; KEGG: pol:Bpro_5557 patatin YP_973206.1 KEGG: pol:Bpro_5558 hypothetical protein YP_973207.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_5559 secretion protein HlyD YP_973208.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_5560 acriflavin resistance protein YP_973209.1 PFAM: outer membrane efflux protein; KEGG: pol:Bpro_5561 outer membrane efflux protein YP_973210.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bur:Bcep18194_B1224 transcriptional regulator, AraC family YP_973211.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; fatty acid desaturase; Oxidoreductase FAD-binding domain protein; KEGG: bur:Bcep18194_B1222 fatty acid desaturase YP_973212.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: sil:SPO0190 oxidoreductase, GMC family YP_973213.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPO2045 medium-chain-fatty-acid--CoA ligase YP_973214.1 KEGG: ade:Adeh_1143 aldehyde dehydrogenase YP_973215.1 PFAM: OmpW family protein; KEGG: pol:Bpro_5480 OmpW YP_973216.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_1336 transcriptional regulator, LysR family YP_973217.1 KEGG: bte:BTH_I0809 hypothetical protein YP_973218.1 type IV secretion VirD4 coupling protein family YP_973219.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: rme:Rmet_1549 CopG-like DNA-binding YP_973220.1 PFAM: type II secretion system protein E; KEGG: rso:RSc2584 probable conjugal transfer protein TrbB YP_973221.1 PFAM: Conjugal transfer protein TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC YP_973222.1 KEGG: rme:Rmet_1343 putative conjugal transfer TrbD transmembrane protein YP_973223.1 type IV secretion system VirB4 family YP_973224.1 KEGG: rme:Rmet_1554 putative conjugal transfer TrbJ signal peptide protein YP_973225.1 type IV secretion VirB6 family YP_973226.1 PFAM: Conjugal transfer protein; KEGG: rme:Rmet_1348 conjugal transfer protein YP_973227.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rso:RSc2576 probable conjugal transfer lipoprotein TrbG YP_973228.1 PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_1559 conjugation TrbI-like protein YP_973229.1 KEGG: rso:RSc2574 hypothetical/unknown protein YP_973230.1 PFAM: protein of unknown function DUF805; KEGG: chu:CHU_1014 possible cytochrome YP_973235.1 KEGG: rfr:Rfer_4310 hypothetical protein YP_973239.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pol:Bpro_5428 hypothetical protein YP_973245.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bpm:BURPS1710b_0084 H-NS histone family protein YP_973246.1 KEGG: rme:Rmet_1504 hypothetical protein YP_973249.1 PFAM: type II secretion system protein E; KEGG: rme:Rmet_6302 type II secretion system protein E YP_973252.1 KEGG: pol:Bpro_5229 type IV secretory pathway VirB4 components-like YP_973253.1 KEGG: mlo:mll9607 conjugal transfer protein trbJ YP_973254.1 KEGG: rme:Rmet_6307 hypothetical protein YP_973256.1 KEGG: bbr:BB3199 putative lipoprotein YP_973257.1 KEGG: bbr:BB3198 lipoprotein YP_973258.1 KEGG: bpe:BP1830 hypothetical protein YP_973259.1 KEGG: tcr:510377.134 mucin-associated surface protein (MASP) Pfam: Prosystemin PROSITE: ALA_RICH YP_973260.1 PFAM: type II secretion system protein E; KEGG: bbr:BB3195 putative general secretion pathway protein YP_973261.1 KEGG: bpe:BP1833 putative general secretion pathway protein YP_973262.1 KEGG: pol:Bpro_5457 type IV secretory pathway component VirB8-like YP_973263.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rbe:RBE_1012 VirB9 YP_973264.1 PFAM: conjugation TrbI family protein; KEGG: pol:Bpro_5455 conjugation TrbI-like protein YP_973266.1 KEGG: rme:Rmet_6048 superfamily I DNA and RNA helicases-like protein YP_973268.1 PFAM: Lytic transglycosylase, catalytic; KEGG: bcn:Bcen_0007 lytic transglycosylase, catalytic YP_973269.1 PFAM: initiator RepB protein; KEGG: pol:Bpro_5513 initiator RepB protein YP_973271.1 KEGG: bxe:Bxe_C0019 putative transposase YP_973272.1 TIGRFAM: parB-like partition proteins; KEGG: pol:Bpro_5044 ParB-like partition proteins YP_973273.1 KEGG: rfr:Rfer_4285 ATPase involved in chromosome partitioning-like YP_973274.1 PFAM: transposase, IS4 family protein; KEGG: ftl:FTL_1926 transposase YP_973275.1 KEGG: sco:SCP1.214 putative transposase YP_973276.1 PFAM: phage integrase family protein; KEGG: rso:RS01673 putative integrase/recombinase protein YP_973277.1 KEGG: rfr:Rfer_4437 hypothetical protein YP_973278.1 PFAM: sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_05030 sigma 54-dependent transcriptional activator YP_973280.1 PFAM: von Willebrand factor, type A; KEGG: hpy:HP0428 phage/colicin/tellurite resistance cluster TerY protein YP_973282.1 PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: hpy:HP0432 protein kinase C-like protein YP_973283.1 KEGG: hpy:HP0447 hypothetical protein YP_973285.1 KEGG: bat:BAS0873 hypothetical protein YP_973289.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pcr:Pcryo_0956 SNF2-related YP_973290.1 KEGG: pcr:Pcryo_0955 hypothetical protein YP_973291.1 KEGG: pcr:Pcryo_0954 hypothetical protein YP_973292.1 KEGG: xcb:XC_2788 hypothetical protein YP_973293.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: rfr:Rfer_4341 DNA-directed DNA polymerase YP_973295.1 KEGG: noc:Noc_0666 hypothetical protein YP_973296.1 PFAM: Heat shock protein 70; KEGG: noc:Noc_0667 heat shock protein HSP70 YP_973297.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: noc:Noc_0668 AAA ATPase YP_973298.1 KEGG: noc:Noc_0670 hypothetical protein YP_973299.1 PFAM: UvrD/REP helicase; KEGG: dar:Daro_2560 UvrD/REP helicase YP_973300.1 PFAM: SMC domain protein; KEGG: dar:Daro_2559 hypothetical protein YP_973301.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO6640 putative ATP-dependent helicase YP_973302.1 KEGG: hch:HCH_03464 methyl-accepting chemotaxis protein YP_973303.1 PFAM: PglZ domain; KEGG: hch:HCH_03465 hypothetical protein YP_973304.1 KEGG: hch:HCH_03466 probable phage resistance protein YP_973306.1 KEGG: nma:NMA0935 hypothetical protein YP_973307.1 KEGG: bte:BTH_I0114 hypothetical protein YP_973308.1 KEGG: rme:Rmet_2228 hypothetical protein YP_973309.1 PFAM: protein kinase; NERD domain protein; SMART: serine/threonine protein kinase; KEGG: hch:HCH_03471 serine/threonine protein kinase YP_973310.1 KEGG: pol:Bpro_0373 transcriptional regulator, Cro/CI family YP_973311.1 KEGG: mhu:Mhun_2961 protein of unknown function DUF262 YP_973313.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein YP_973314.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region YP_973315.1 KEGG: ppu:PP_3916 hypothetical protein YP_973317.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: pol:Bpro_5053 ParB-like partition proteins YP_973318.1 KEGG: rso:RSc1661 hypothetical protein YP_973319.1 KEGG: pol:Bpro_5065 hypothetical protein YP_973320.1 KEGG: pol:Bpro_5066 hypothetical protein YP_973321.1 KEGG: pol:Bpro_5067 hypothetical protein YP_973322.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pol:Bpro_5068 UBA/ThiF-type NAD/FAD binding fold YP_973325.1 KEGG: dar:Daro_2546 helicase, C-terminal YP_973326.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: xcv:XCVd0044 putative secreted protein YP_973328.1 KEGG: dar:Daro_1656 hypothetical protein YP_973329.1 TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; KEGG: pha:PSHAa0002 DNA polymerase III subunit beta YP_973331.1 KEGG: dar:Daro_2562 hypothetical protein YP_973332.1 PFAM: protein of unknown function DUF1044; KEGG: pol:Bpro_0470 protein of unknown function DUF1044 YP_973333.1 KEGG: pol:Bpro_0471 putative transcriptional regulator YP_973335.1 KEGG: tcr:510243.50 adenylate kinase YP_973339.1 PFAM: UvrD/REP helicase; KEGG: rme:Rmet_6314 UvrD/REP helicase YP_973341.1 KEGG: eba:p1B250 hypothetical protein YP_973342.1 KEGG: dar:Daro_2561 DNA repair exonuclease-like protein YP_973344.1 KEGG: dar:Daro_2237 putative ATPase involved in DNA repair YP_973347.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pol:Bpro_4565 single-strand binding protein YP_973348.1 KEGG: dar:Daro_2291 hypothetical protein YP_973354.1 KEGG: rme:Rmet_6309 hypothetical protein YP_973355.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5481 HNH endonuclease YP_973356.1 KEGG: rme:Rmet_6312 hypothetical protein YP_973357.1 KEGG: bbr:BB3193 putative fimbrial protein YP_973358.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5402 HNH endonuclease YP_973359.1 KEGG: rfr:Rfer_4492 methylation YP_973360.1 PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related YP_973362.1 PFAM: HipA domain protein; KEGG: bpa:BPP0645 hypothetical protein YP_973363.1 KEGG: rfr:Rfer_3066 transcriptional regulator, XRE family YP_973364.1 KEGG: reu:Reut_C6002 hypothetical protein YP_973365.1 KEGG: cne:CNE03390 hypothetical protein YP_973369.1 KEGG: dar:Daro_2217 hypothetical protein YP_973373.1 PFAM: phage integrase family protein; KEGG: dar:Daro_2218 hypothetical protein YP_973374.1 PFAM: AntA/AntB antirepressor domain protein; KEGG: sbo:SBO_3650 putative anti-repressor protein YP_973375.1 KEGG: aba:Acid345_1191 hypothetical protein YP_973376.1 KEGG: xcv:XCVd0119 hypothetical protein YP_973377.1 KEGG: pol:Bpro_5019 response regulator receiver domain protein (CheY-like) YP_973378.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4045 transcriptional regulator, LuxR family YP_973379.1 KEGG: xac:XAC3949 hypothetical protein YP_973380.1 KEGG: bxe:Bxe_C0677 hypothetical protein YP_973381.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: xac:XAC3952 hypothetical protein YP_973382.1 KEGG: gox:GOX2517 hypothetical protein YP_973383.1 KEGG: bxe:Bxe_B0131 putative transposase YP_973384.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: rfr:Rfer_2266 transposase IS116/IS110/IS902 YP_973385.1 PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911 YP_973386.1 KEGG: reu:Reut_D6443 hypothetical protein YP_973389.1 KEGG: rfr:Rfer_4341 DNA-directed DNA polymerase YP_973390.1 KEGG: rme:Rmet_6035 hypothetical protein YP_973391.1 KEGG: rso:RS05227 hypothetical protein YP_973393.1 KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease YP_973394.1 PFAM: Endonuclease I; KEGG: cvi:CV1988 deoxyribonuclease I YP_973397.1 KEGG: bxe:Bxe_B0034 hypothetical protein YP_973398.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0035 putative phage integrase YP_973399.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0036 hypothetical protein YP_973400.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease YP_973401.1 KEGG: pol:Bpro_5414 hypothetical protein YP_973402.1 KEGG: eba:ebA2494 hypothetical protein YP_973403.1 KEGG: bxe:Bxe_A1797 hypothetical protein YP_973404.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rpd:RPD_3630 DEAD/DEAH box helicase-like YP_973405.1 KEGG: ana:alr4702 unknown protein YP_973408.1 PFAM: SMC domain protein; KEGG: ani:AN3906.2 hypothetical protein YP_973411.1 KEGG: hypothetical protein YP_973412.1 KEGG: mcp:MCAP_0861 hypothetical protein YP_973414.1 KEGG: mka:MK0070 superfamily I DNA/RNA helicase YP_973415.1 KEGG: aci:ACIAD2665 hypothetical protein YP_973416.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region YP_973417.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein YP_973418.1 KEGG: sma:SAV6022 putative dihydrolipoamide S-succinyltransferase YP_973419.1 KEGG: rfr:Rfer_4294 hypothetical protein YP_973421.1 KEGG: rme:Rmet_2228 hypothetical protein YP_973422.1 KEGG: rfr:Rfer_4484 hypothetical protein YP_973425.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5402 HNH endonuclease YP_973426.1 KEGG: xfa:XF1762 hypothetical protein YP_973428.1 PFAM: transposase, IS4 family protein; KEGG: lpf:lpl2868 hypothetical protein YP_973429.1 KEGG: eba:p1B349 hypothetical protein YP_973430.1 KEGG: rfr:Rfer_4448 hypothetical protein YP_973432.1 KEGG: pol:Bpro_5393 hypothetical protein YP_973439.1 KEGG: pol:Bpro_5379 hypothetical protein YP_973443.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pol:Bpro_0014 filamentation induced by cAMP protein Fic YP_973444.1 KEGG: bxe:Bxe_A4409 two component transcriptional regulator, fis family YP_973449.1 KEGG: pol:Bpro_5391 hypothetical protein YP_973450.1 KEGG: pol:Bpro_5390 phage integrase YP_973451.1 KEGG: pol:Bpro_5076 hypothetical protein YP_973452.1 KEGG: pha:PSHAb0292 putative HNH endonuclease YP_973453.1 PFAM: transposase, IS4 family protein; KEGG: bte:BTH_II0087 transposase YP_973454.1 KEGG: gox:GOX2701 DNA integration/recombination/invertion protein YP_973455.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: psp:PSPPH_2948 DNA/RNA non-specific endonuclease YP_973456.1 KEGG: rpe:RPE_4640 hypothetical protein YP_973458.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: rpe:RPE_4642 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_973460.1 KEGG: hypothetical protein YP_973461.1 KEGG: pfl:PFL_5240 hypothetical protein YP_973462.1 KEGG: pha:PSHAa1245 hypothetical protein YP_973466.1 PFAM: transposase IS3/IS911 family protein; KEGG: hypothetical protein YP_973467.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_3060 IS66 Orf2 like YP_973468.1 PFAM: transposase IS66; KEGG: bxe:Bxe_A2416 transposase ISPpu14 orf3 like, IS66 family YP_973469.1 KEGG: bxe:Bxe_B1865 transposase IS66 family YP_973470.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: bms:BRA0379 DNA-damage-inducible protein J, putative YP_973471.1 KEGG: bms:BRA0378 hypothetical protein YP_973472.1 KEGG: tfu:Tfu_0717 hypothetical protein YP_973473.1 KEGG: bms:BRA0377 hypothetical protein YP_973475.1 KEGG: hdu:HD0159 hypothetical protein YP_973480.1 KEGG: spj:MGAS2096_Spy0566 hypothetical protein YP_973486.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: reu:Reut_D6444 ParB-like partition protein YP_973487.1 KEGG: rfr:Rfer_2033 helicase C2 YP_973488.1 KEGG: pol:Bpro_5045 TrfA YP_973489.1 TIGRFAM: parB-like partition proteins; SMART: ParB domain protein nuclease; KEGG: rme:Rmet_5820 ParB-like partition proteins YP_973490.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_5515 cobyrinic acid a,c-diamide synthase YP_973491.1 PFAM: phage integrase family protein; KEGG: rme:Rmet_6086 phage integrase YP_973492.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: nmu:Nmul_A0832 histidine kinase YP_973494.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_1191 ATPase, E1-E2 type YP_973495.1 KEGG: rpc:RPC_4057 putative transposase YP_973496.1 KEGG: sgl:SG2354 hypothetical protein YP_973497.1 KEGG: spn:SP0811 transposase family protein YP_973498.1 KEGG: pol:Bpro_3862 hypothetical protein YP_973499.1 PFAM: transposase, IS4 family protein; KEGG: rme:Rmet_4228 transposase, IS4 YP_973500.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_2845 transposase IS116/IS110/IS902 YP_973502.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pmu:PM1891 mercuric ion-binding protein, putative YP_973503.1 PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344 YP_973504.1 PFAM: Heavy metal transport/detoxification protein; KEGG: rfr:Rfer_1143 heavy metal transport/detoxification protein YP_973506.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase YP_973507.1 KEGG: eli:ELI_04580 hypothetical protein YP_973508.1 KEGG: eba:ebA6677 hypothetical protein YP_973509.1 KEGG: rfr:Rfer_3652 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase YP_973510.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate YP_973511.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_973512.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: rpc:RPC_3807 fructose-6-phosphate phosphoketolase YP_973513.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: bxe:Bxe_B1346 acetate kinase YP_973514.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: bcn:Bcen_5284 transketolase YP_973515.1 KEGG: bxe:Bxe_B1342 hypothetical protein YP_973516.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_973517.1 KEGG: ret:RHE_CH01344 myo-inositol catabolism, sugar kinase protein YP_973518.1 KEGG: rfr:Rfer_1146 hypothetical protein YP_973520.1 KEGG: mma:MM3344 transposase YP_973521.1 KEGG: mma:MM3343 transposase YP_973522.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: cbu:CBU_0096 cardiolipin synthetase YP_973523.1 KEGG: eli:ELI_14395 hypothetical protein YP_973524.1 KEGG: bbr:BB1194 arsenical pump membrane protein YP_973525.1 KEGG: pol:Bpro_3494 hypothetical protein YP_973526.1 PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3493 outer membrane efflux protein YP_973527.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3492 secretion protein HlyD YP_973528.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_3491 heavy metal efflux pump CzcA YP_973530.1 KEGG: rfr:Rfer_0421 hypothetical protein YP_973531.1 KEGG: pol:Bpro_1174 hypothetical protein YP_973532.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: aae:aq_1130 periplasmic cell division protein (SufI) YP_973533.1 KEGG: rfr:Rfer_0420 hypothetical protein YP_973534.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pol:Bpro_1176 isoprenylcysteine carboxyl methyltransferase YP_973535.1 PFAM: Heavy metal transport/detoxification protein; KEGG: rso:RSc3348 probable cation-transporting ATPase transmembrane protein YP_973536.1 KEGG: pol:Bpro_1177 hypothetical protein YP_973537.1 PFAM: Heavy metal transport/detoxification protein; KEGG: mbu:Mbur_0612 copper-translocating P-type ATPase YP_973538.1 PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344 YP_973539.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase YP_973540.1 KEGG: rpb:RPB_1025 short-chain dehydrogenase/reductase SDR YP_973541.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; Propanediol utilization protein; KEGG: nwi:Nwi_1948 acetate kinase YP_973542.1 KEGG: lpp:lpp2348 hypothetical protein YP_973543.1 PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_4365 major facilitator superfamily MFS_1 YP_973544.1 KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase YP_973545.1 KEGG: pol:Bpro_1612 creatininase YP_973547.1 PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_0340 transposase IS3/IS911 YP_973548.1 PFAM: IS66 Orf2 family protein; KEGG: reu:Reut_C6378 IS66 Orf2 like YP_973549.1 PFAM: transposase IS66; KEGG: reu:Reut_C6183 transposase IS66 YP_973550.1 PFAM: protein of unknown function DUF305; KEGG: mlo:mlr5326 hypothetical protein YP_973552.1 KEGG: rfr:Rfer_0421 hypothetical protein YP_973553.1 KEGG: pol:Bpro_1174 hypothetical protein YP_973554.1 KEGG: pol:Bpro_1175 hypothetical protein YP_973555.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rfr:Rfer_0419 hypothetical protein YP_973556.1 PFAM: Heavy metal transport/detoxification protein; KEGG: tbd:Tbd_1659 probable copper ion binding protein YP_973557.1 KEGG: pol:Bpro_1196 hypothetical protein YP_973558.1 PFAM: LemA family protein; KEGG: nha:Nham_3402 LemA YP_973559.1 PFAM: protein of unknown function DUF477; KEGG: bxe:Bxe_A1903 putative glycine rich membrane protein YP_973560.1 PFAM: protein of unknown function DUF477; KEGG: rpb:RPB_3954 protein of unknown function DUF477 YP_973561.1 KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_973562.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat YP_973563.1 KEGG: mmc:Mmcs_1460 hypothetical protein YP_973564.1 KEGG: pol:Bpro_3489 hypothetical protein YP_973565.1 PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain YP_973566.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal YP_973567.1 KEGG: pol:Bpro_3484 putative copper resistance-related lipoprotein YP_973568.1 KEGG: pol:Bpro_3483 hypothetical protein YP_973569.1 KEGG: pol:Bpro_3482 hypothetical protein YP_973570.1 KEGG: dar:Daro_2282 hypothetical protein YP_973571.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pfl:PFL_3148 heavy metal sensor histidine kinase YP_973572.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4285 heavy-metal DNA-binding response regulator CzrR YP_973574.1 KEGG: pol:Bpro_3489 hypothetical protein YP_973575.1 PFAM: protein of unknown function DUF305; KEGG: mlo:mlr5326 hypothetical protein YP_973576.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bld:BLi02092 hypothetical protein YP_973577.1 KEGG: rme:Rmet_6120 hypothetical protein YP_973578.1 PFAM: outer membrane efflux protein; KEGG: dar:Daro_2620 outer membrane efflux protein YP_973579.1 KEGG: dar:Daro_2619 hypothetical protein YP_973580.1 KEGG: dar:Daro_2618 hypothetical protein YP_973581.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2617 heavy metal efflux pump CzcA YP_973582.1 KEGG: dar:Daro_2616 hypothetical protein YP_973584.1 KEGG: pol:Bpro_5390 phage integrase YP_973585.1 KEGG: xom:XOO_2997 hypothetical protein YP_973586.1 KEGG: lpp:lpp2423 hypothetical protein YP_973587.1 KEGG: ana:alr4702 unknown protein YP_973588.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pol:Bpro_3984 histone-like nucleoid-structuring protein H-NS YP_973589.1 PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif) YP_973590.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_A1834 putative glutathione S-transferase YP_973591.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sil:SPO0563 glutathione S-transferase, putative YP_973593.1 KEGG: eca:ECA2874 hypothetical protein YP_973594.1 KEGG: eca:ECA2875 putative ATP-binding protein YP_973595.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: eca:ECA2876 putative phage-related protein YP_973596.1 KEGG: eca:ECA2877 hypothetical protein YP_973597.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: eca:ECA2878 putative signal transduction protein YP_973598.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: tth:TTC0474 cell division protein ftsK YP_973602.1 KEGG: pol:Bpro_5319 hypothetical protein YP_973603.1 KEGG: pol:Bpro_5318 prevent-host-death protein YP_973604.1 KEGG: eba:ebA246 putative transposase, fragment YP_973606.1 KEGG: eba:ebA562 transposase YP_973607.1 PFAM: transposase IS3/IS911 family protein; KEGG: rso:RSp0547 ISRSO8-transposase orfA protein YP_973609.1 SMART: AAA ATPase; KEGG: dar:Daro_3951 AAA ATPase, central region YP_973611.1 KEGG: dra:DRB0120m putative transposase YP_973612.1 PFAM: Radical SAM domain protein; KEGG: mxa:MXAN_2901 putative radical SAM domain protein YP_973613.1 PFAM: ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: bcn:Bcen_1418 ATPase AAA-2 YP_973615.1 SMART: Nucleotide binding protein, PINc YP_973616.1 KEGG: rpd:RPD_2126 ATPase YP_973618.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase YP_973621.1 KEGG: sit:TM1040_0955 conserved hypothetical protein YP_973623.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: rfr:Rfer_0852 methionine aminopeptidase, type I YP_973624.1 KEGG: rfr:Rfer_0851 hypothetical protein YP_973626.1 KEGG: lpl:lp_3570 transposase (putative) YP_973627.1 KEGG: neu:NE1552 transposase IS4 family YP_973628.1 KEGG: bcn:Bcen_5856 hypothetical protein YP_973632.1 KEGG: sgl:SG2354 hypothetical protein YP_973636.1 KEGG: eba:ebA106 hypothetical protein YP_973637.1 KEGG: pol:Bpro_0961 hypothetical protein YP_973638.1 PFAM: Silent information regulator protein Sir2; KEGG: bxe:Bxe_B2799 silent information regulator protein Sir2 YP_973639.1 KEGG: pol:Bpro_5386 hypothetical protein YP_973640.1 KEGG: bxe:Bxe_A0247 hypothetical protein YP_973641.1 KEGG: bps:BPSL0759 hypothetical protein YP_973647.1 KEGG: bbr:BB2366 putative DNA-binding protein YP_973649.1 KEGG: sgl:SG2354 hypothetical protein YP_973651.1 PFAM: metallophosphoesterase; KEGG: bps:BPSL0758 putative phosphoesterase YP_973653.1 PFAM: acylphosphatase; KEGG: rso:RSc0219 putative acylphosphatase protein YP_973655.1 KEGG: pfo:Pfl_3330 DNA alkylation repair enzyme-like YP_973656.1 PFAM: helix-turn-helix domain protein; KEGG: tbd:Tbd_1344 transcriptional regulator, XRE family YP_973657.1 KEGG: dar:Daro_1923 hypothetical protein YP_973658.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: pfl:PFL_3843 MazG nucleotide pyrophosphohydrolase domain protein YP_973659.1 KEGG: hypothetical protein YP_973660.1 KEGG: gme:Gmet_3000 conserved hypothetical protein-signal peptide prediction YP_973661.1 KEGG: pol:Bpro_2110 hypothetical protein YP_973662.1 PFAM: HipA domain protein; KEGG: pol:Bpro_1570 HipA-like YP_973663.1 KEGG: noc:Noc_1099 hypothetical protein YP_973664.1 PFAM: protein of unknown function DUF433; KEGG: ret:RHE_PA00164 hypothetical protein YP_973665.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bxe:Bxe_B0843 heavy metal/H+ antiporter, CDF family YP_973666.1 KEGG: dar:Daro_1179 hypothetical protein YP_973671.1 KEGG: rfr:Rfer_0742 hypothetical protein YP_973673.1 SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: reu:Reut_B4467 helix-turn-helix, AraC type YP_973674.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: reu:Reut_B4466 di-haem cytochrome c peroxidase YP_973675.1 KEGG: reu:Reut_B4465 auxin-binding protein YP_973677.1 SMART: HNH nuclease; KEGG: rfr:Rfer_1208 HNH nuclease YP_973678.1 PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1209 histidine triad (HIT) protein YP_973679.1 KEGG: noc:Noc_1323 hypothetical protein YP_973681.1 KEGG: rfr:Rfer_3110 hypothetical protein YP_973684.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_973685.1 KEGG: par:Psyc_1292 hypothetical protein YP_973686.1 KEGG: bxe:Bxe_A3008 hypothetical protein YP_973687.1 PFAM: TfoX, N-terminal domain protein; KEGG: pol:Bpro_0665 TfoX-like YP_973688.1 KEGG: bxe:Bxe_B0210 hypothetical protein YP_973689.1 KEGG: rfr:Rfer_0740 hypothetical protein YP_973692.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: eba:ebB208 putative HNS-like transcription regulator protein YP_973693.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bcn:Bcen_4816 transcriptional regulator, AbrB family YP_973695.1 KEGG: pen:PSEEN3029 chromate transporter YP_973696.1 SMART: helix-turn-helix domain protein; KEGG: pae:PA0906 probable transcriptional regulator YP_973697.1 KEGG: bps:BPSL0750 hypothetical protein YP_973698.1 KEGG: bps:BPSL0749 hypothetical protein YP_973699.1 KEGG: bps:BPSL0748 hypothetical protein YP_973700.1 KEGG: rfr:Rfer_1225 hypothetical protein YP_973701.1 KEGG: rfr:Rfer_1226 hypothetical protein YP_973702.1 KEGG: rfr:Rfer_1227 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_973704.1 KEGG: rfr:Rfer_4341 DNA-directed DNA polymerase YP_973705.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease YP_973706.1 KEGG: bps:BPSL0747 hypothetical protein YP_973708.1 KEGG: rfr:Rfer_1226 hypothetical protein YP_973710.1 KEGG: dar:Daro_0976 hypothetical protein YP_973711.1 KEGG: rpa:RPA3945 hypothetical protein YP_973712.1 KEGG: bte:BTH_I2719 pathogenesis-related protein YP_973713.1 KEGG: bte:BTH_I2720 hypothetical protein YP_973715.1 PFAM: protein of unknown function DUF88; KEGG: xcv:XCV1700 hypothetical protein YP_973716.1 KEGG: bcn:Bcen_2889 N-6 DNA methylase YP_973717.1 KEGG: bcn:Bcen_2888 hypothetical protein YP_973718.1 PFAM: helicase domain protein; KEGG: bcn:Bcen_2887 helicase-like YP_973719.1 KEGG: bcn:Bcen_2886 hypothetical protein YP_973720.1 KEGG: rpb:RPB_2530 hypothetical protein YP_973722.1 PFAM: N-6 DNA methylase; KEGG: syf:Synpcc7942_1060 type I restriction-modification YP_973723.1 KEGG: mfa:Mfla_2606 restriction modification system DNA specificity domain YP_973724.1 PFAM: HipA domain protein; KEGG: nwi:Nwi_2868 hypothetical protein YP_973726.1 KEGG: dar:Daro_2234 hypothetical protein YP_973727.1 KEGG: reu:Reut_C6002 hypothetical protein YP_973728.1 KEGG: bcn:Bcen_5890 hypothetical protein YP_973730.1 PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: syf:Synpcc7942_1065 DEAD/DEAH box helicase-like YP_973731.1 KEGG: sma:SAV6943 hypothetical protein YP_973732.1 KEGG: sma:SAV6944 hypothetical protein YP_973733.1 KEGG: sco:SCO1407 hypothetical protein YP_973737.1 PFAM: phage integrase family protein; KEGG: reu:Reut_C6164 phage integrase:phage integrase, N-terminal SAM-like YP_973738.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pac:PPA1387 chromosome partitioning protein YP_973739.1 TIGRFAM: parB-like partition proteins; KEGG: bpm:BURPS1710b_A1504 ParB family protein YP_973740.1 KEGG: plu:plu4276 transposase, IS982 family YP_973741.1 PFAM: transposase, IS4 family protein; KEGG: ftu:FTT1523c transposase YP_973742.1 PFAM: initiator RepB protein; KEGG: reu:Reut_C6161 hypothetical protein YP_973743.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_B3024 putative phage integrase YP_973744.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: eba:c2A308 hypothetical protein YP_973745.1 KEGG: reu:Reut_C6002 hypothetical protein YP_973746.1 PFAM: Lipocalin family protein; KEGG: bbr:BB4561 outer membrane lipoprotein YP_973748.1 PFAM: protein of unknown function UPF0060; KEGG: rso:RS05320 probable transmembrane protein YP_973749.1 KEGG: plt:Plut_0984 hypothetical protein YP_973750.1 PFAM: protein of unknown function DUF1272; KEGG: bcn:Bcen_2053 protein of unknown function DUF1272 YP_973751.1 PFAM: 17 kDa surface antigen; KEGG: rso:RSc1027 probable transmembrane protein YP_973752.1 PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1421 thiopurine S-methyltransferase YP_973753.1 KEGG: vvy:VV1848 hypothetical protein YP_973754.1 KEGG: sgl:SG2354 hypothetical protein YP_973755.1 KEGG: sgl:SG2354 hypothetical protein YP_973756.1 KEGG: eba:ebA6355 transposase, IS4 family YP_973757.1 KEGG: xac:XAC1911 hypothetical protein YP_973758.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: xac:XAC1912 serine/threonine kinase YP_973759.1 KEGG: xac:XAC1913 hypothetical protein YP_973762.1 KEGG: bpm:BURPS1710b_0788 hypothetical protein YP_973763.1 KEGG: reu:Reut_C6015 hypothetical protein YP_973764.1 PFAM: UvrD/REP helicase; DNA topoisomerase, type IA, zn finger domain protein; KEGG: cps:CPS_2454 helicase IV YP_973765.1 PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: gme:Gmet_1797 DNA topoisomerase I:restriction endonuclease YP_973766.1 KEGG: pca:Pcar_0808 hypothetical protein YP_973772.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: bba:Bd0303 regulator of nucleoside diphosphate kinase YP_973775.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3827 uncharacterized protein UPF0065 YP_973776.1 KEGG: pol:Bpro_3826 amidase YP_973777.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A2914 regulatory protein, LysR:LysR, substrate-binding YP_973778.1 catalyzes the formation of pyruvate from serine YP_973779.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1657 hypothetical protein YP_973780.1 PFAM: Amidase; KEGG: pol:Bpro_3826 amidase YP_973782.1 KEGG: pca:Pcar_0528 hypothetical protein YP_973783.1 KEGG: vvu:VV10111 hypothetical protein YP_973784.1 KEGG: bxe:Bxe_C0670 putative transposase YP_973785.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_1907 transcriptional regulator, MarR family YP_973786.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pol:Bpro_1908 oxidoreductase-like YP_973787.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_1909 ferredoxin YP_973788.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1911 uncharacterized protein UPF0065 YP_973789.1 KEGG: bpe:BP0683 4,5-dihydroxyphthalate decarboxylase YP_973790.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_1910 Rieske (2Fe-2S) region YP_973791.1 TIGRFAM: hemerythrin-like metal-binding protein; KEGG: dar:Daro_2762 hemerythrin HHE cation binding region YP_973793.1 PFAM: transposase, IS4 family protein; KEGG: mhu:Mhun_3123 transposase, IS4 YP_973794.1 KEGG: rfr:Rfer_1318 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_973795.1 KEGG: pol:Bpro_5546 hypothetical protein YP_973796.1 PFAM: helix-turn-helix domain protein; KEGG: pol:Bpro_5547 transcriptional regulator, XRE family YP_973798.1 KEGG: rfr:Rfer_3059 transposase IS66 YP_973799.1 PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; Recombinase; KEGG: ret:RHE_PA00038 probable insertion sequence transposase protein YP_973800.1 PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66 YP_973801.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902 YP_973802.1 KEGG: eba:ebA6355 transposase, IS4 family YP_973803.1 PFAM: stress protein; SMART: von Willebrand factor, type A; KEGG: psp:PSPPH_0839 tellurium resistance protein, putative YP_973804.1 KEGG: xom:XOO_1971 ISXo3 transposase orfB YP_973805.1 KEGG: rso:RSp1136 ISRSO18-transposase protein YP_973806.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSp0584 ISRSO9-transposase protein YP_973807.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein YP_973808.1 KEGG: xcb:XC_0858 IS1477 transposase YP_973809.1 PFAM: transposase IS3/IS911 family protein; KEGG: bpm:BURPS1710b_A1167 IS407A, transposase OrfA YP_973811.1 KEGG: bxe:Bxe_A4308 hypothetical protein YP_973812.1 PFAM: protein of unknown function DUF475; KEGG: tdn:Tmden_1846 protein of unknown function DUF475 YP_973813.1 PFAM: stress protein; KEGG: eba:p1B317 protein involved in tellurite resistance YP_973814.1 PFAM: stress protein; KEGG: eba:p1B315 protein involved in tellurite resistance YP_973815.1 PFAM: stress protein; KEGG: eba:p1B312 tellurium resistance protein YP_973816.1 PFAM: protein of unknown function DUF201; KEGG: eba:p1B310 hypothetical protein YP_973817.1 KEGG: eba:p1B308 hypothetical protein YP_973818.1 KEGG: eba:p1B307 hypothetical protein YP_973819.1 KEGG: eba:p1B306 hypothetical protein YP_973820.1 KEGG: eba:p1B303 predicted ATP/GTP-binding protein YP_973821.1 PFAM: stress protein; KEGG: eba:p1B301 tellurium resistance protein YP_973822.1 SMART: serine/threonine protein kinase; KEGG: aci:ACIAD1964 conserved hypothetical protein; putative protein kinase YP_973823.1 KEGG: yps:YPTB3466 hypothetical protein YP_973824.1 PFAM: von Willebrand factor, type A; KEGG: yps:YPTB3465 hypothetical protein YP_973825.1 PFAM: von Willebrand factor, type A; KEGG: aci:ACIAD1967 putative tellurium resistance protein (TerY-like) YP_973826.1 PFAM: stress protein; KEGG: aci:ACIAD1968 tellurium resistance protein YP_973827.1 PFAM: von Willebrand factor, type A; KEGG: aci:ACIAD1969 tellurium resistance protein YP_973829.1 KEGG: sde:Sde_3789 hypothetical protein YP_973830.1 KEGG: sde:Sde_3788 hypothetical protein YP_973832.1 PFAM: Curli production assembly/transport component CsgG; KEGG: sde:Sde_3786 uncharacterized protein involved in formation of curli polymers-like YP_973833.1 KEGG: rme:Rmet_5344 hypothetical protein YP_973834.1 KEGG: rme:Rmet_5343 hypothetical protein YP_973835.1 PFAM: transposase, IS4 family protein; KEGG: neu:NE2446 transposase IS4 family YP_973836.1 KEGG: dar:Daro_1366 hypothetical protein YP_973837.1 KEGG: reu:Reut_A0258 hypothetical protein YP_973841.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: pfo:Pfl_3893 ADP-ribosylation/crystallin J1 YP_973842.1 KEGG: gme:Gmet_0792 hypothetical protein YP_973843.1 PFAM: TniB family protein; KEGG: bcn:Bcen_4904 TniB YP_973844.1 KEGG: nha:Nham_4579 integrase, catalytic region YP_973845.1 PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region YP_973847.1 PFAM: protein of unknown function DUF465; KEGG: cvi:CV3311 hypothetical protein YP_973848.1 PFAM: phage integrase family protein; KEGG: rme:Rmet_6086 phage integrase YP_973849.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: xcv:XCVd0002 replication protein B YP_973850.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: eba:p2A292 partitioning protein, ParA YP_973851.1 PFAM: initiator RepB protein; KEGG: bcn:Bcen_5164 hypothetical protein YP_973853.1 PFAM: beta-lactamase domain protein; KEGG: reu:Reut_B4274 beta-lactamase-like YP_973855.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: nar:Saro_0133 ParB-like partition proteins YP_973856.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_973857.1 KEGG: rfr:Rfer_3059 transposase IS66 YP_973858.1 PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; Recombinase; KEGG: ret:RHE_PA00038 probable insertion sequence transposase protein YP_973859.1 PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66 YP_973860.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_3060 IS66 Orf2 like YP_973861.1 PFAM: transposase IS3/IS911 family protein; KEGG: hypothetical protein YP_973862.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like YP_973863.1 PFAM: transposase IS66; KEGG: bxe:Bxe_A2416 transposase ISPpu14 orf3 like, IS66 family YP_973864.1 KEGG: ana:alr5232 unknown protein YP_973865.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_5572 transposase IS116/IS110/IS902 YP_973866.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_2845 transposase IS116/IS110/IS902 YP_973868.1 KEGG: bur:Bcep18194_A3351 histone-like nucleoid-structuring protein H-NS YP_973869.1 PFAM: protein of unknown function DUF1326; KEGG: mlo:mll4476 hypothetical protein YP_973870.1 KEGG: pol:Bpro_1844 hypothetical protein YP_973871.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_2826 UspA YP_973872.1 PFAM: protein of unknown function DUF1458; KEGG: pol:Bpro_0507 protein of unknown function DUF1458 YP_973873.1 KEGG: bxe:Bxe_A3008 hypothetical protein YP_973874.1 PFAM: FAD dependent oxidoreductase; KEGG: sme:SMb20991 conserved hypothetical protein, similar to Y20992, slightly similar to monooxygenase YP_973875.1 PFAM: phage Tail Collar domain protein; KEGG: pen:PSEEN0745 phage tail collar YP_973876.1 KEGG: ana:alr9024 transposase YP_973877.1 KEGG: mma:MM3344 transposase YP_973878.1 KEGG: mma:MM3343 transposase YP_973879.1 KEGG: bxe:Bxe_A4308 hypothetical protein YP_973880.1 KEGG: gvi:gll2960 hypothetical protein YP_973881.1 PFAM: protein of unknown function DUF1486; KEGG: eba:ebA463 hypothetical protein YP_973882.1 KEGG: sgl:SG2354 hypothetical protein YP_973883.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pol:Bpro_3984 histone-like nucleoid-structuring protein H-NS YP_973884.1 PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif) YP_973885.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sal:Sala_1100 glutathione S-transferase-like protein YP_973886.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sil:SPO0563 glutathione S-transferase, putative YP_973888.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_C0670 putative transposase YP_973889.1 KEGG: rba:RB10556 hypothetical protein-signal peptide prediction YP_973890.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bxe:Bxe_A0918 excinuclease ABC, A subunit YP_973891.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: reu:Reut_B4855 protein of unknown function DUF6, transmembrane YP_973893.1 KEGG: bja:blr1916 putative transposase YP_973894.1 PFAM: putative transposase; KEGG: sfx:S2705 putative transposase YP_973895.1 PFAM: regulatory proteins, IclR; KEGG: rme:Rmet_0082 transcriptional regulator, IclR family YP_973896.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rso:RSc1823 probable nitrilase protein YP_973897.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_1622 extracellular ligand-binding receptor YP_973898.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1621 inner-membrane translocator YP_973899.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1620 inner-membrane translocator YP_973900.1 PFAM: ABC transporter related; KEGG: pol:Bpro_2988 ABC transporter related YP_973901.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1618 ABC transporter related YP_973902.1 KEGG: nmu:Nmul_A0376 tetratricopeptide TPR_4 YP_973903.1 KEGG: ppr:PBPRA0512 putative transposase YP_973904.1 KEGG: pol:Bpro_3862 hypothetical protein YP_973905.1 KEGG: sgl:SG2354 hypothetical protein YP_973906.1 PFAM: protein of unknown function DUF1458; KEGG: pol:Bpro_0507 protein of unknown function DUF1458 YP_973907.1 PFAM: regulatory protein GntR, HTH; KEGG: bpa:BPP1291 putative GntR-family transcriptional regulator YP_973908.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1 YP_973909.1 SMART: regulatory protein, AsnC/Lrp family; KEGG: bbr:BB3671 AsnC-family transcriptional regulator YP_973910.1 PFAM: regulatory protein, AsnC/Lrp family; regulatory protein, ArsR; KEGG: pol:Bpro_3829 transcriptional regulator, AsnC family YP_973912.1 KEGG: tcr:504239.220 mucin-associated surface protein (MASP) Pfam: Vicilin_N PROSITE: ALA_RICH CHEMOTAXIS_TRANSDUC_2 YP_973914.1 KEGG: xac:XACb0027 hypothetical protein YP_973915.1 PFAM: PilT protein domain protein; KEGG: xfa:XF1589 plasmid stabilization protein YP_973916.1 KEGG: xfa:XF1590 plasmid stabilization protein YP_973917.1 KEGG: pol:Bpro_3013 hypothetical protein YP_973918.1 PFAM: phage Tail Collar domain protein; KEGG: ana:alr4706 unknown protein YP_973919.1 KEGG: rme:Rmet_3749 hypothetical protein YP_973920.1 KEGG: psp:PSPPH_B0059 ExeA-like protein YP_973921.1 KEGG: xac:XAC2430 Tn5044 transposase YP_973923.1 KEGG: cvi:CV0729 poly (3-hydroxybutyrate) depolymerase YP_973925.1 PFAM: TrfA family protein; KEGG: gsu:GSU2175 TrfA-related protein YP_973926.1 KEGG: xcv:XCVc0004 hypothetical protein YP_973927.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: xcv:XCVc0005 putative partition protein YP_973928.1 PFAM: N-6 DNA methylase; KEGG: pol:Bpro_1940 N-6 DNA methylase YP_973929.1 PFAM: restriction modification system DNA specificity domain; KEGG: mca:MCA0836 type I restriction-modification system, S subunit, EcoA family YP_973930.1 PFAM: protein of unknown function DUF1016; KEGG: hypothetical protein YP_973931.1 PFAM: protein of unknown function DUF1311; KEGG: cvi:CV4287 hypothetical protein YP_973933.1 KEGG: pol:Bpro_1944 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like YP_973934.1 KEGG: stt:t4254 hypothetical protein YP_973935.1 KEGG: psb:Psyr_3719 hypothetical protein YP_973936.1 KEGG: nwi:Nwi_0257 hypothetical protein YP_973937.1 KEGG: dvu:DVU1704 hypothetical protein YP_973938.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein YP_973939.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region YP_973940.1 KEGG: rsp:RSP_4245 hypothetical protein YP_973941.1 KEGG: nha:Nham_1372 hypothetical protein YP_973942.1 PFAM: protein of unknown function DUF955; KEGG: rsp:RSP_4244 hypothetical protein YP_973943.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: xcb:XC_2075 transcriptional regulator, HTH_3 family YP_973944.1 KEGG: hch:HCH_06284 hypothetical protein YP_973945.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: ecs:ECs5249 putative resolvase YP_973946.1 KEGG: noc:Noc_0639 hypothetical protein YP_973947.1 KEGG: pfo:Pfl_4900 hypothetical protein YP_973948.1 KEGG: pfo:Pfl_4899 hypothetical protein YP_973949.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: nmu:Nmul_A2012 phage integrase YP_973950.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease YP_973951.1 PFAM: zinc finger, CHC2-family protein; KEGG: zmo:ZMO1622 DNA primase YP_973952.1 PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5089 transposase, IS4 YP_973953.1 PFAM: PilT protein domain protein; KEGG: pst:PSPTO_B0073 PIN domain protein YP_973954.1 KEGG: plu:plu2369 hypothetical protein YP_973956.1 PFAM: protein of unknown function DUF820; KEGG: ava:Ava_0371 protein of unknown function DUF820 YP_973957.1 KEGG: pol:Bpro_0367 hypothetical protein YP_973958.1 SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0373 transcriptional regulator, Cro/CI family YP_973960.1 KEGG: aci:ACIAD3407 hypothetical protein YP_973961.1 KEGG: psp:PSPPH_B0005 transcriptional regulator, Cro/CI family YP_973962.1 KEGG: bcn:Bcen_2656 hypothetical protein YP_973963.1 KEGG: xft:PD0577 site-specific DNA-methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_973964.1 KEGG: cch:Cag_1630 hypothetical protein YP_973965.1 PFAM: protein of unknown function DUF262; KEGG: rpb:RPB_2195 hypothetical protein YP_973966.1 PFAM: peptidase S24, S26A and S26B; KEGG: ngo:NGO0479 putative lambda repressor protein CI, putative phage associated protein YP_973967.1 KEGG: bur:Bcep18194_A4982 hypothetical protein YP_973968.1 KEGG: pol:Bpro_5485 transcription regulator containing helix turn helix domain YP_973970.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: xac:XACa0041 partition protein A YP_973971.1 KEGG: tcr:504039.180 mucin-associated surface protein (MASP) Pfam: Mucin PROSITE: ALA_RICH GLU_RICH YP_973972.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: relaxase/mobilization nuclease domain protein YP_973975.1 KEGG: bxe:Bxe_A2574 hypothetical protein YP_973977.1 KEGG: rfr:Rfer_4327 hypothetical protein YP_973978.1 KEGG: rru:Rru_A0352 RepA YP_973979.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ecs:ECs1067 hypothetical protein YP_973980.1 KEGG: gme:Gmet_A3568 hypothetical protein YP_973981.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: psp:PSPPH_B0057 resolvase, putative YP_973982.1 unwinds double stranded DNA YP_973983.1 KEGG: eba:ebA510 hypothetical protein YP_973984.1 SMART: helix-turn-helix domain protein YP_973985.1 KEGG: pst:PSPTOA0015 plasmid partition protein ParB, truncated YP_973986.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: yps:pYptb0037 plasmid partitioning protein YP_973988.1 PFAM: MobA/MobL protein; KEGG: xac:XAC3260 plasmid mobilization protein YP_973989.1 PFAM: protein of unknown function DUF29; KEGG: plu:plu3933 hypothetical protein YP_973992.1 KEGG: jan:Jann_1769 mucin-associated surface protein YP_973994.1 PFAM: replication C family protein; KEGG: sty:HCM1.221 putative replication protein YP_973995.1 KEGG: sfx:S2721 putative DNA helicase YP_973996.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: bxe:Bxe_A3938 hypothetical protein YP_973997.1 PFAM: mobilisation protein YP_980249.1 KEGG: jan:Jann_1999 hypothetical protein YP_980251.1 KEGG: rfr:Rfer_0182 hypothetical protein YP_980252.1 PFAM: NnrUfamily protein; KEGG: pol:Bpro_0008 NnrU YP_980253.1 KEGG: pol:Bpro_0016 hypothetical protein YP_980254.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_980255.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0019 septum site-determining protein MinD YP_980256.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: pol:Bpro_0020 septum site-determining protein MinC YP_980257.1 KEGG: pol:Bpro_0021 metallophosphoesterase YP_980258.1 PFAM: protein of unknown function DUF296; KEGG: bxe:Bxe_B2660 hypothetical protein YP_980259.1 KEGG: pol:Bpro_0024 hypothetical protein YP_980260.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_0025 phospholipase D/transphosphatidylase YP_980261.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pol:Bpro_0026 endonuclease/exonuclease/phosphatase YP_980262.1 KEGG: rfr:Rfer_2108 hypothetical protein YP_980263.1 KEGG: pol:Bpro_0028 NADPH-dependent FMN reductase YP_980264.1 KEGG: pol:Bpro_0029 hypothetical protein YP_980265.1 KEGG: rfr:Rfer_2928 hypothetical protein YP_980266.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_980267.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0038 FAD dependent oxidoreductase YP_980268.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: hch:HCH_00139 thiamine biosynthesis protein ThiS YP_980269.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_980270.1 KEGG: pol:Bpro_0041 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_980271.1 KEGG: sde:Sde_1824 hypothetical protein YP_980272.1 PFAM: glycosyl transferase, family 51; KEGG: stt:t3243 monofunctional biosynthetic peptidoglycan transglycosylase YP_980274.1 KEGG: hch:HCH_06497 hypothetical protein YP_980275.1 PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: sat:SYN_02036 von Willebrand factor type A like domain YP_980276.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation YP_980277.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: reu:Reut_A0185 response regulator receiver:transcriptional regulatory protein, C-terminal YP_980278.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pol:Bpro_0063 NADH:flavin oxidoreductase/NADH oxidase YP_980279.1 PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0066 protein of unknown function DUF1328 YP_980280.1 KEGG: pol:Bpro_0067 hypothetical protein YP_980281.1 PFAM: transglutaminase domain protein; KEGG: pol:Bpro_0068 transglutaminase-like YP_980282.1 catalyzes the hydrolysis of allophanate YP_980283.1 TIGRFAM: urea amidolyase related protein; biotin carboxylation domain protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reu:Reut_B4883 allophanate hydrolase subunit 2 YP_980284.1 KEGG: neu:NE2417 hypothetical protein YP_980285.1 KEGG: bxe:Bxe_B1382 hypothetical protein YP_980286.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_B4886 ABC transporter related YP_980287.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_B4887 binding-protein-dependent transport systems inner membrane component YP_980288.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NLPA lipoprotein; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: reu:Reut_B4888 ABC transporter, substrate-binding protein, aliphatic sulphonates YP_980289.1 KEGG: bxe:Bxe_A3256 methylglyoxal synthase; TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein YP_980290.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: gka:GK1971 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein) YP_980291.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sme:SMa0250 conserved hypothetical DedA-like protein YP_980292.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_2839 tripartite ATP-independent periplasmic transporter, DctQ component YP_980293.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: rfr:Rfer_0956 carbohydrate kinase, thermoresistant glucokinase YP_980294.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_0957 transcriptional regulator, LacI family YP_980295.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_2851 4Fe-4S ferredoxin, iron-sulfur binding YP_980296.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: rfr:Rfer_2850 aldehyde ferredoxin oxidoreductase YP_980297.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2849 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_980298.1 PFAM: thiamineS protein; KEGG: rfr:Rfer_2848 thiamineS YP_980299.1 KEGG: rfr:Rfer_2847 hypothetical protein YP_980300.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_0283 acetyl-CoA hydrolase/transferase YP_980301.1 KEGG: spn:SP1772 cell wall surface anchor family protein YP_980303.1 PFAM: GCN5-related N-acetyltransferase; ATP-citrate lyase/succinyl-CoA ligase; KEGG: rfr:Rfer_2352 GCN5-related N-acetyltransferase YP_980304.1 PFAM: histone deacetylase superfamily; KEGG: bxe:Bxe_B1514 putative histone deacetylase-family protein YP_980306.1 KEGG: ade:Adeh_0897 hypothetical protein YP_980307.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA YP_980308.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: gox:GOX1500 hypothetical protein YP_980309.1 KEGG: dge:Dgeo_2717 hypothetical protein YP_980310.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_980311.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_980312.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_0075 lysine exporter protein (LysE/YggA) YP_980313.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0076 cobyrinic acid a,c-diamide synthase YP_980314.1 PFAM: protein of unknown function DUF1234; KEGG: pol:Bpro_0077 protein of unknown function DUF1234 YP_980315.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: pol:Bpro_0078 ParB-like partition proteins YP_980316.1 PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0111 FAD linked oxidase-like YP_980317.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pol:Bpro_0113 ATP--cobalamin adenosyltransferase YP_980318.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_A2466 transcriptional regulator, LysR family YP_980320.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_2807 acetyl-CoA hydrolase/transferase YP_980321.1 KEGG: pol:Bpro_0115 hypothetical protein YP_980322.1 KEGG: pol:Bpro_0116 hypothetical protein YP_980323.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pol:Bpro_0117 uracil-xanthine permease YP_980324.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: lpp:lpp2271 twitching motility protein PilU YP_980325.1 KEGG: pol:Bpro_5398 putative transposase, IS891/IS1136/IS1341 YP_980326.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB; KEGG: pol:Bpro_5398 putative transposase, IS891/IS1136/IS1341 YP_980327.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ade:Adeh_3412 secretion protein HlyD YP_980328.1 PFAM: protein of unknown function DUF214; KEGG: ade:Adeh_3411 ABC transporter, inner membrane subunit YP_980330.1 PFAM: protein of unknown function DUF891; KEGG: eba:ebD100 hypothetical prophage protein YP_980331.1 KEGG: cch:Cag_1308 hypothetical protein YP_980332.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3881 ABC transporter related YP_980333.1 KEGG: mlo:msl5725 hypothetical protein YP_980334.1 KEGG: dar:Daro_2916 hypothetical protein YP_980335.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: rfr:Rfer_2024 adenylate cyclase YP_980336.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rso:RSp1044 probable cobalt-nickel-resistance system transmembrane protein YP_980337.1 KEGG: ana:alr3092 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_980338.1 PFAM: flavin reductase domain protein, FMN-binding; KEGG: pol:Bpro_0126 flavin reductase-like, FMN-binding YP_980339.1 KEGG: pol:Bpro_0143 hypothetical protein YP_980340.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0148 D-amino-acid dehydrogenase YP_980341.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_980342.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0150 extracellular ligand-binding receptor YP_980343.1 KEGG: pol:Bpro_0151 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_980344.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_0401 UspA YP_980345.1 PFAM: metallophosphoesterase; KEGG: pol:Bpro_0155 metallophosphoesterase YP_980346.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0158 transcriptional regulator, LysR family YP_980347.1 KEGG: pol:Bpro_0159 hypothetical protein YP_980348.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_980351.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: corR; DNA-binding response regulator CorR YP_980352.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_4855 periplasmic sensor hybrid histidine kinase YP_980353.1 PFAM: ABC transporter related; KEGG: rfr:Rfer_3383 ABC transporter related YP_980354.1 KEGG: rfr:Rfer_0345 hypothetical protein YP_980355.1 KEGG: pol:Bpro_0164 hypothetical protein YP_980356.1 PFAM: MOSC domain containing protein; KEGG: rme:Rmet_3580 MOSC domain protein YP_980357.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_980358.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_0166 AAA ATPase, central region YP_980359.1 KEGG: bxe:Bxe_B0555 hypothetical protein YP_980360.1 KEGG: pol:Bpro_0170 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_980361.1 PFAM: homocysteine S-methyltransferase; KEGG: pol:Bpro_0172 5-methyltetrahydrofolate--homocysteine S-methyltransferase YP_980362.1 PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_0173 cyclic nucleotide-binding domain (cNMP-BD) protein YP_980363.1 KEGG: pol:Bpro_0174 5-methyltetrahydrofolate--homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein YP_980364.1 KEGG: mma:MM1677 hypothetical protein YP_980365.1 KEGG: pol:Bpro_0181 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_980366.1 PFAM: nitrogen regulatory protein P-II; KEGG: pol:Bpro_0183 nitrogen regulatory protein P-II (GlnB, GlnK) YP_980367.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pol:Bpro_0184 ammonium transporter YP_980368.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pol:Bpro_0186 senescence marker protein-30 (SMP-30) YP_980369.1 PFAM: FAD linked oxidase domain protein; KEGG: rfr:Rfer_0480 FAD linked oxidase-like YP_980370.1 PFAM: protein of unknown function DUF1275; KEGG: bur:Bcep18194_C7065 protein of unknown function DUF1275 YP_980371.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: pol:Bpro_0188 protein of unknown function DUF224, cysteine-rich region YP_980372.1 KEGG: hypothetical protein YP_980373.1 KEGG: cvi:CV0172 poly (3-hydroxybutyrate) depolymerase YP_980374.1 PFAM: glutathione peroxidase; KEGG: pol:Bpro_0190 glutathione peroxidase YP_980375.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_0191 protein of unknown function DUF6, transmembrane YP_980376.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 major facilitator superfamily MFS_1 YP_980377.1 KEGG: pol:Bpro_0193 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_980378.1 KEGG: Dmel_CG32611; CG32611 gene product from transcript CG32611-RB YP_980379.1 PFAM: DNA polymerase, beta domain protein region; KEGG: neu:NE2224 hypothetical protein YP_980380.1 PFAM: protein of unknown function DUF86; KEGG: neu:NE2225 protein of unknown function DUF86 YP_980381.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_980382.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0198 twin-arginine translocation pathway signal YP_980383.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pol:Bpro_0199 5-carboxymethyl-2-hydroxymuconate isomerase YP_980384.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_980385.1 PFAM: metallophosphoesterase; KEGG: pol:Bpro_0201 metallophosphoesterase YP_980386.1 KEGG: pol:Bpro_0202 hypothetical protein YP_980387.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1 YP_980388.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein YP_980389.1 PFAM: Spore coat U domain protein; KEGG: bxe:Bxe_B0341 putative lipoprotein YP_980390.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pol:Bpro_0610 fimbrial biogenesis outer membrane usher protein YP_980391.1 KEGG: bur:Bcep18194_A4396 P pilus assembly protein chaperone PapD-like YP_980392.1 PFAM: Spore coat U domain protein; KEGG: ade:Adeh_3602 spore coat U YP_980393.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_980394.1 KEGG: pol:Bpro_0204 hypothetical protein YP_980395.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: pol:Bpro_0205 lipopolysaccharide heptosyltransferase II YP_980396.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_0207 periplasmic sensor signal transduction histidine kinase YP_980397.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0208 two component transcriptional regulator, winged helix family YP_980398.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0209 major facilitator superfamily MFS_1 YP_980399.1 PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_0210 peptidase M48, Ste24p YP_980401.1 KEGG: bcn:Bcen_3538 hypothetical protein YP_980402.1 KEGG: rso:RSc0443 probable glycin-rich signal peptide protein YP_980406.1 PFAM: aldehyde dehydrogenase; KEGG: rru:Rru_A0462 aldehyde dehydrogenase YP_980407.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rso:RSc1202 probable flavoprotein NADH-dependent oxidoreductase YP_980408.1 PFAM: regulatory protein, TetR; KEGG: bcn:Bcen_3964 transcriptional regulator, TetR family YP_980409.1 PFAM: protein of unknown function RIO1; KEGG: pol:Bpro_3868 protein of unknown function RIO1 YP_980410.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2407 putative ABC-transporter membrane-spanning ATP-binding component YP_980411.1 KEGG: bja:blr1916 putative transposase YP_980412.1 KEGG: gsu:GSU0255 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_980413.1 KEGG: pol:Bpro_0216 exodeoxyribonuclease III (xth); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_980414.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_980415.1 KEGG: pol:Bpro_0218 hypothetical protein YP_980416.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_980417.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_980418.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_980419.1 functions in MreBCD complex in some organisms YP_980420.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_980421.1 PFAM: Rod shape-determining protein MreD; KEGG: pol:Bpro_0224 putative rod shape-determining MreD transmembrane protein YP_980422.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_0225 peptidoglycan glycosyltransferase YP_980423.1 PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_0226 protein of unknown function DUF81 YP_980424.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bxe:Bxe_A4189 ammonium transporter YP_980425.1 KEGG: rme:Rmet_1299 hypothetical protein YP_980426.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pol:Bpro_0229 glucose-methanol-choline oxidoreductase YP_980427.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_A0014 transcriptional regulator, LysR family YP_980428.1 PFAM: protein of unknown function DUF140; KEGG: pol:Bpro_0230 protein of unknown function DUF140 YP_980429.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0231 ABC transporter related YP_980430.1 PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0232 mammalian cell entry related YP_980431.1 KEGG: pol:Bpro_0233 putative lipoprotein YP_980432.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: pol:Bpro_0238 multiple antibiotic resistance (MarC)-related proteins YP_980433.1 PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_0240 DsbA oxidoreductase YP_980434.1 PFAM: dienelactone hydrolase; KEGG: pol:Bpro_0241 carboxymethylenebutenolidase YP_980435.1 PFAM: protein of unknown function DUF1003; KEGG: tbd:Tbd_1949 hypothetical protein YP_980436.1 PFAM: protein of unknown function DUF72; KEGG: pfo:Pfl_2381 protein of unknown function DUF72 YP_980437.1 PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_0244 Mg2+ transporter protein, CorA-like YP_980438.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_980439.1 PFAM: conserved hypothetical protein 701; KEGG: pol:Bpro_0246 conserved hypothetical protein 701 YP_980440.1 PFAM: VanZ family protein; KEGG: pol:Bpro_0247 VanZ like protein YP_980441.1 KEGG: pol:Bpro_0248 ferredoxin-like YP_980442.1 KEGG: pol:Bpro_0249 putative transmembrane protein YP_980443.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pol:Bpro_0250 serine-type D-Ala-D-Ala carboxypeptidase YP_980444.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_980445.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_980446.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_980447.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_980448.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_980449.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_980450.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_980451.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_980452.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_980453.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_980454.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_980455.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_980456.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_980457.1 one of the stabilizing components for the large ribosomal subunit YP_980458.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_980459.1 PFAM: Redoxin domain protein; KEGG: pol:Bpro_0266 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_980460.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_0267 GCN5-related N-acetyltransferase YP_980461.1 PFAM: cytochrome B561; KEGG: pol:Bpro_0268 cytochrome b561 YP_980462.1 PFAM: cytochrome c, class II; KEGG: pol:Bpro_0269 cytochrome c, class II YP_980463.1 PFAM: Redoxin domain protein; KEGG: pol:Bpro_0270 putative transmembrane protein YP_980464.1 KEGG: pol:Bpro_0271 hypothetical protein YP_980465.1 KEGG: rfr:Rfer_1327 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_980466.1 PFAM: OmpW family protein; KEGG: pol:Bpro_0280 OmpW YP_980467.1 PFAM: protein of unknown function DUF445; KEGG: bpe:BP2153 hypothetical protein YP_980468.1 KEGG: pol:Bpro_0278 putative esterase YP_980469.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0281 L-carnitine dehydratase/bile acid-inducible protein F YP_980470.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: bcn:Bcen_4095 transcriptional regulator, LacI family YP_980471.1 KEGG: hch:HCH_06066 hypothetical protein YP_980472.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ccr:CC1137 transcriptional regulator, LacI family YP_980473.1 PFAM: extracellular solute-binding protein, family 1; KEGG: atc:AGR_pAT_379 putative sugar transport sugar binding protein YP_980474.1 PFAM: extracellular solute-binding protein, family 1; KEGG: atc:AGR_pAT_379 putative sugar transport sugar binding protein YP_980475.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00048 probable sucrose ABC transporter, permease protein YP_980476.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_376 sugar ABC transporter, permease protein YP_980477.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06906 ABC-type sugar transport system, ATPase components YP_980478.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA YP_980479.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_2826 UspA YP_980480.1 PFAM: protein of unknown function DUF1458; KEGG: pol:Bpro_0507 protein of unknown function DUF1458 YP_980481.1 KEGG: pol:Bpro_0295 hypothetical protein YP_980482.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0296 major facilitator superfamily MFS_1 YP_980483.1 PFAM: PTS system fructose subfamily IIA component; KEGG: pol:Bpro_0297 PTS system fructose subfamily IIA component YP_980484.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pol:Bpro_0298 HPrNtr YP_980485.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: pol:Bpro_0299 phosphoenolpyruvate-protein phosphotransferase YP_980486.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_0311 protein of unknown function DUF6, transmembrane YP_980488.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_980489.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_980490.1 TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: xcv:XCVb0013 putative metal-binding protein, sec-C motif YP_980491.1 PFAM: protein of unknown function DUF493; KEGG: pol:Bpro_0316 protein of unknown function DUF493 YP_980492.1 PFAM: aminotransferase, class IV; KEGG: pol:Bpro_0317 aminotransferase, class IV YP_980493.1 KEGG: pol:Bpro_0319 hypothetical protein YP_980494.1 KEGG: rfr:Rfer_0113 putative ATP synthase protein I YP_980495.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_980496.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_980497.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_980498.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_980499.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_980500.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_980501.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_980502.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_980503.1 PFAM: protein of unknown function DUF477; KEGG: pol:Bpro_0329 protein of unknown function DUF477 YP_980504.1 PFAM: protein of unknown function DUF477; KEGG: pol:Bpro_0330 protein of unknown function DUF477 YP_980505.1 PFAM: LemA family protein; KEGG: pol:Bpro_0331 LemA YP_980506.1 KEGG: pol:Bpro_0333 hypothetical protein YP_980507.1 KEGG: pol:Bpro_0334 hydrolase of the alpha/beta-hydrolase fold-like YP_980508.1 KEGG: pol:Bpro_0335 hypothetical protein YP_980509.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_0336 cytochrome c, class I YP_980510.1 PFAM: High potential iron-sulfur protein; KEGG: bxe:Bxe_A4333 putative high potential iron-sulfur protein YP_980511.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0596 uncharacterized protein UPF0065 YP_980512.1 KEGG: pol:Bpro_3606 hypothetical protein YP_980513.1 PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_04499 long-chain acyl-CoA synthetases (AMP-forming) YP_980514.1 KEGG: pol:Bpro_0388 putative lipoprotein transmembrane YP_980515.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0389 drug resistance transporter Bcr/CflA subfamily YP_980516.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_0390 protein of unknown function UPF0011 YP_980517.1 PFAM: protein of unknown function UPF0102; KEGG: pol:Bpro_0391 protein of unknown function UPF0102 YP_980518.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_980519.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0393 transport-associated YP_980520.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_0394 2-hydroxy-3-oxopropionate reductase YP_980521.1 PFAM: transposase, IS4 family protein; KEGG: bte:BTH_II0087 transposase YP_980522.1 PFAM: cyclic nucleotide-binding; KEGG: pfo:Pfl_1398 cyclic nucleotide-binding (cNMP-BD) protein YP_980523.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0396 twitching motility protein YP_980524.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB YP_980525.1 PFAM: alanine racemase domain protein; KEGG: pol:Bpro_0397 protein of unknown function UPF0001 YP_980526.1 KEGG: pol:Bpro_0428 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_980528.1 KEGG: pol:Bpro_0429 hypothetical protein YP_980529.1 PFAM: glycosyl transferase, family 2; KEGG: reu:Reut_B4949 glycosyl transferase, family 2 YP_980530.1 KEGG: reu:Reut_B4948 hypothetical protein YP_980531.1 KEGG: bcn:Bcen_0847 hypothetical protein YP_980532.1 KEGG: bte:BTH_II0344 lipoprotein, putative YP_980533.1 KEGG: bte:BTH_II0345 hypothetical protein YP_980534.1 PFAM: protein of unknown function DUF583; KEGG: pol:Bpro_0430 protein of unknown function DUF583 YP_980535.1 PFAM: LrgB family protein; KEGG: pol:Bpro_0431 LrgB-like protein YP_980536.1 PFAM: LrgA family protein; KEGG: pol:Bpro_0432 LrgA YP_980537.1 PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0433 FAD linked oxidase-like YP_980538.1 PFAM: protein of unknown function DUF820; KEGG: gvi:gll1561 hypothetical protein YP_980540.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0437 transcriptional regulator, LysR family YP_980541.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_980542.1 KEGG: pol:Bpro_0441 hypothetical protein YP_980543.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RS03096 putative Leu/Ile/Val-binding lipoprotein transmembrane YP_980544.1 KEGG: pol:Bpro_0443 hypothetical protein YP_980545.1 KEGG: pol:Bpro_0444 hypothetical protein YP_980546.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_0446 fumarylacetoacetate (FAA) hydrolase YP_980547.1 KEGG: bte:BTH_II0346 hypothetical protein YP_980549.1 KEGG: pol:Bpro_0449 hypothetical protein YP_980550.1 PFAM: domain of unknown function DUF1745; KEGG: pol:Bpro_0450 hypothetical protein YP_980551.1 SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0454 transcriptional regulator, XRE family YP_980552.1 KEGG: pol:Bpro_0456 hypothetical protein YP_980553.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0457 phospholipid/glycerol acyltransferase YP_980554.1 KEGG: pol:Bpro_0459 hypothetical protein YP_980555.1 KEGG: pol:Bpro_0460 hypothetical protein YP_980556.1 KEGG: tbd:Tbd_2217 hypothetical protein YP_980557.1 PFAM: YiaAB two helix domain protein; KEGG: pol:Bpro_0458 hypothetical protein YP_980559.1 KEGG: pol:Bpro_0461 hypothetical protein YP_980560.1 KEGG: pol:Bpro_4510 hypothetical protein YP_980561.1 KEGG: pol:Bpro_0463 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like YP_980562.1 PFAM: GtrA family protein; KEGG: pol:Bpro_0464 GtrA-like protein YP_980563.1 PFAM: glycosyl transferase, family 9; KEGG: pol:Bpro_0465 glycosyl transferase, family 9 YP_980564.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_980565.1 TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: pol:Bpro_0467 S-adenosylmethionine YP_980566.1 catalyzes branch migration in Holliday junction intermediates YP_980568.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0472 transcriptional regulator, LysR family YP_980569.1 PFAM: Ferritin, Dps family protein; KEGG: ana:all4145 probable DNA-binding stress protein YP_980570.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: pol:Bpro_0474 4-hydroxybenzoate polyprenyl transferase YP_980571.1 KEGG: pol:Bpro_0475 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_980572.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: pol:Bpro_0476 glycerol kinase YP_980573.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0484 FAD dependent oxidoreductase YP_980574.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_980575.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_980576.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_980577.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_980578.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_980579.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_980580.1 binds 5S rRNA along with protein L5 and L25 YP_980581.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_980582.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_980583.1 PFAM: ribosomal protein L15; KEGG: pol:Bpro_0494 ribosomal protein L15 YP_980584.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_980585.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_980586.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_980587.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_980588.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_980589.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_980590.1 is a component of the macrolide binding site in the peptidyl transferase center YP_980591.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein YP_980592.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1 YP_980593.1 PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4288 sodium/hydrogen exchanger YP_980594.1 PFAM: phospholipase A1; KEGG: pol:Bpro_4284 phospholipase A1 YP_980595.1 KEGG: pol:Bpro_4283 hypothetical protein YP_980596.1 PFAM: UvrD/REP helicase; KEGG: pol:Bpro_4281 UvrD/REP helicase YP_980597.1 TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase YP_980598.1 putative bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia YP_980599.1 PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1424 polysaccharide deacetylase YP_980600.1 PFAM: Transthyretin; KEGG: atc:AGR_C_4223 conserved hypothetical protein PA1518 YP_980601.1 PFAM: protein of unknown function DUF989; KEGG: pol:Bpro_1430 putative transmembrane protein YP_980602.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bur:Bcep18194_A6396 AAA ATPase, central region YP_980603.1 KEGG: pol:Bpro_4276 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_980604.1 KEGG: pen:PSEEN4898 hypothetical protein YP_980606.1 KEGG: pol:Bpro_4265 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_980607.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_980608.1 KEGG: pol:Bpro_4263 hypothetical protein YP_980611.1 PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 Roadblock/LC7 YP_980613.1 PFAM: Dual specificity protein phosphatase; ABC transporter related; SMART: AAA ATPase; protein tyrosine phosphatase, catalytic region; KEGG: sit:TM1040_3766 ABC transporter related YP_980614.1 PFAM: protein of unknown function, ATP binding; KEGG: noc:Noc_0133 conserved hypothetical ATP binding protein YP_980616.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_4260 methyltransferase type 12 YP_980617.1 KEGG: sde:Sde_2347 hypothetical protein YP_980618.1 KEGG: pol:Bpro_4259 putative lipoprotein YP_980619.1 PFAM: CoA-binding domain protein; KEGG: pol:Bpro_4258 CoA-binding YP_980620.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: pol:Bpro_4257 thiol-disulfide interchange protein DsbD-like YP_980621.1 PFAM: helix-turn-helix domain protein; KEGG: plu:plu2740 hypothetical protein YP_980622.1 KEGG: ret:RHE_CH01166 hypothetical protein YP_980623.1 PFAM: protein of unknown function DUF167; KEGG: pol:Bpro_2664 protein of unknown function DUF167 YP_980624.1 PFAM: cytochrome B561; KEGG: rfr:Rfer_2432 cytochrome b561 YP_980625.1 KEGG: gsu:GSU2680 hypothetical protein YP_980626.1 KEGG: pol:Bpro_1262 hypothetical protein YP_980627.1 KEGG: bbr:BB1683 phage-related hypothetical protein YP_980628.1 KEGG: gsu:GSU0552 hypothetical protein YP_980630.1 SMART: helix-turn-helix domain protein; KEGG: putative transcriptional regulator YP_980631.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pol:Bpro_4256 radical SAM YP_980632.1 KEGG: ilo:IL0085 uncharacterized conserved coiled coil protein YP_980633.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: rfr:Rfer_3009 chaperonin GroEL YP_980634.1 KEGG: rfr:Rfer_3010 hypothetical protein YP_980635.1 PFAM: UspA domain protein; KEGG: rpa:RPA3434 universal stress protein (Usp) YP_980636.1 KEGG: pol:Bpro_0723 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_980637.1 KEGG: bxe:Bxe_B0447 hypothetical protein YP_980638.1 PFAM: Creatininase; KEGG: pol:Bpro_4255 creatininase YP_980639.1 KEGG: pfo:Pfl_1639 L-sorbosone dehydrogenase YP_980640.1 PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_4246 phosphoglycerate mutase YP_980641.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ade:Adeh_2956 periplasmic sensor hybrid histidine kinase YP_980642.1 PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like) YP_980644.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pol:Bpro_4242 phenazine biosynthesis PhzC/PhzF protein YP_980645.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_4240 aminotransferase, class I and II YP_980646.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_4235 protein of unknown function DUF6, transmembrane YP_980647.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: pol:Bpro_4233 transcriptional regulator, GntR family YP_980648.1 TIGRFAM: conserved repeat domain; KEGG: pcr:Pcryo_1048 hypothetical protein YP_980649.1 TIGRFAM: conserved repeat domain; KEGG: sme:SMc01711 hypothetical protein YP_980650.1 TIGRFAM: conserved repeat domain; KEGG: pcr:Pcryo_1046 protein of unknown function DUF11 YP_980651.1 TIGRFAM: conserved repeat domain; KEGG: mmu:239611 mucin 19 YP_980653.1 KEGG: reu:Reut_C5975 transposase, IS4 YP_980654.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1 YP_980655.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein YP_980656.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_4230 phospholipase D/transphosphatidylase YP_980657.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4229 ABC transporter related YP_980659.1 PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; Recombinase; KEGG: ret:RHE_PA00038 probable insertion sequence transposase protein YP_980660.1 KEGG: rfr:Rfer_2711 transposase IS66 YP_980661.1 KEGG: xom:XOO_3993 ISXo7 transposase YP_980662.1 KEGG: eba:ebA6355 transposase, IS4 family YP_980663.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase YP_980664.1 KEGG: sgl:SG2354 hypothetical protein YP_980665.1 PFAM: transposase IS66; KEGG: bxe:Bxe_B1865 transposase IS66 family YP_980666.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like YP_980667.1 PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911 YP_980668.1 PFAM: transposase, IS4 family protein; KEGG: bxe:Bxe_C0019 putative transposase YP_980669.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902 YP_980670.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bxe:Bxe_C0485 putative transposase IS116/IS110/IS902 YP_980671.1 KEGG: nha:Nham_3929 putative transposase YP_980672.1 PFAM: Integrase, catalytic region; KEGG: gox:GOX2195 transposase (class III) YP_980673.1 PFAM: transposase IS3/IS911 family protein; KEGG: sat:SYN_03173 transposase YP_980674.1 PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4226 beta-lactamase-like YP_980675.1 KEGG: pol:Bpro_4224 hypothetical protein YP_980676.1 KEGG: pol:Bpro_4223 hypothetical protein YP_980677.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: pol:Bpro_4222 glucose-methanol-choline oxidoreductase YP_980678.1 KEGG: pol:Bpro_4221 putative lipase transmembrane protein YP_980679.1 PFAM: response regulator receiver; KEGG: dra:DR2556 response regulator YP_980680.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator YP_980681.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase YP_980682.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: pol:Bpro_4209 CBS domain YP_980683.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_4208 apolipoprotein N-acyltransferase YP_980684.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4207 transcriptional regulator, LysR family YP_980685.1 KEGG: pol:Bpro_4206 L-asparaginases, type II; TIGRFAM: L-asparaginases, type II; PFAM: Asparaginase/glutaminase YP_980686.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_980687.1 KEGG: rfr:Rfer_3695 glycine--tRNA ligase YP_980689.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pol:Bpro_4201 histidinol-phosphate phosphatase YP_980690.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_4200 phospholipid/glycerol acyltransferase YP_980691.1 PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_4199 protein of unknown function DUF45 YP_980692.1 PFAM: response regulator receiver; KEGG: pol:Bpro_4198 response regulator receiver domain protein (CheY-like) YP_980693.1 KEGG: pol:Bpro_4197 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_980694.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: response regulator receiver; KEGG: pol:Bpro_4196 response regulator receiver domain protein (CheY-like) YP_980695.1 KEGG: pol:Bpro_4195 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein YP_980696.1 PFAM: regulatory protein, MerR; KEGG: pol:Bpro_4192 transcriptional regulator, MerR family YP_980697.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_4191 phenylacetic acid degradation-related protein YP_980698.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_4190 acyl-CoA dehydrogenase-like YP_980699.1 PFAM: carbonic anhydrase; KEGG: pol:Bpro_4189 carbonate dehydratase YP_980700.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_980701.1 KEGG: pol:Bpro_4187 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_980702.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_4185 acyl-CoA dehydrogenase-like YP_980703.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_4183 rhodanese-like YP_980704.1 KEGG: pol:Bpro_4174 aminotransferase, class V YP_980706.1 KEGG: pol:Bpro_4174 aminotransferase, class V YP_980707.1 PFAM: protein of unknown function DUF1326; KEGG: mlo:mll4476 hypothetical protein YP_980708.1 KEGG: pol:Bpro_1844 hypothetical protein YP_980709.1 KEGG: pol:Bpro_4182 hypothetical protein YP_980710.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD-superfamily hydrolase, subfamily IA, variant3 YP_980711.1 PFAM: Ion transport 2 domain protein,; KEGG: nha:Nham_1961 ion transport 2 YP_980712.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_3834 transcriptional regulator, AraC family YP_980713.1 activates fatty acids by binding to coenzyme A YP_980714.1 PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase YP_980715.1 PFAM: DinB family protein; KEGG: sme:SMc00593 hypothetical protein YP_980716.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_980717.1 KEGG: pol:Bpro_4158 putative transmembrane protein YP_980718.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_4157 carbamoyl-phosphate synthase L chain, ATP-binding YP_980719.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_4156 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_980720.1 PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4155 pyruvate carboxyltransferase YP_980721.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; protein of unknown function DUF1289; KEGG: pol:Bpro_4154 YbaK/prolyl-tRNA synthetase associated region YP_980722.1 PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_4153 DsbA oxidoreductase YP_980723.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: cvi:CV2945 CBS domain-containing protein YP_980724.1 3'-5' exonuclease of DNA polymerase III YP_980725.1 PFAM: transport-associated YP_980726.1 PFAM: protein of unknown function DUF485; KEGG: xoo:XOO4547 hypothetical protein YP_980727.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pol:Bpro_4142 general substrate transporter YP_980728.1 KEGG: pol:Bpro_4141 hypothetical protein YP_980729.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor YP_980730.1 KEGG: pol:Bpro_4139 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_980731.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_980732.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_4131 ribosomal RNA methyltransferase RrmJ/FtsJ YP_980733.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: pol:Bpro_4130 5,10-methylenetetrahydrofolate reductase YP_980734.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pol:Bpro_4129 rare lipoprotein A YP_980735.1 KEGG: pol:Bpro_4118 hypothetical protein YP_980736.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: pol:Bpro_4117 cytochrome bd ubiquinol oxidase, subunit I YP_980737.1 PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: pol:Bpro_4116 cytochrome bd ubiquinol oxidase, subunit II YP_980738.1 PFAM: protein of unknown function DUF519; KEGG: pol:Bpro_4114 protein of unknown function DUF519 YP_980739.1 PFAM: magnesium chelatase, ChlI subunit; sigma-54 factor, interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1470 regulator of RNA terminal phosphate cyclase YP_980740.1 PFAM: protein of unknown function UPF0027; KEGG: pol:Bpro_1473 protein of unknown function UPF0027 YP_980741.1 PFAM: RNA 3'-terminal phosphate cyclase; KEGG: pol:Bpro_1474 RNA-3'-phosphate cyclase YP_980742.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_980743.1 forms a direct contact with the tRNA during translation YP_980744.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_980745.1 SMART: helicase c2; KEGG: rfr:Rfer_2033 helicase C2 YP_980746.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_980747.1 PFAM: peptidase M23B; KEGG: pol:Bpro_4107 peptidase M23B YP_980748.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_980749.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_980750.1 PFAM: protein of unknown function UPF0054; KEGG: rfr:Rfer_0737 protein of unknown function UPF0054 YP_980751.1 PFAM: PhoH family protein; KEGG: pol:Bpro_4095 PhoH-like protein YP_980752.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_980753.1 PFAM: protein of unknown function DUF511; KEGG: cte:CT1399 hypothetical protein YP_980754.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_980755.1 KEGG: pol:Bpro_4092 putative threonine aldolase YP_980756.1 PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_4091 phosphoglycerate mutase YP_980757.1 KEGG: pol:Bpro_4090 hypothetical protein YP_980758.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_980759.1 KEGG: pol:Bpro_4088 dihydroneopterin aldolase YP_980760.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_4087 short-chain dehydrogenase/reductase SDR YP_980761.1 PFAM: protein of unknown function DUF185; KEGG: pol:Bpro_4086 protein of unknown function DUF185 YP_980762.1 KEGG: pol:Bpro_0616 transcriptional regulator, XRE family YP_980763.1 PFAM: HipA domain protein; KEGG: pol:Bpro_0617 HipA-like YP_980764.1 KEGG: pol:Bpro_4085 hypothetical protein YP_980765.1 PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_1097 extracellular solute-binding protein, family 1 YP_980766.1 KEGG: pol:Bpro_3918 alpha,alpha-trehalose-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase, family 20 YP_980767.1 PFAM: glycoside hydrolase 15-related; KEGG: pol:Bpro_3916 glycoside hydrolase 15-related YP_980768.1 KEGG: pol:Bpro_3915 HAD-superfamily hydrolase subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase YP_980769.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0652 lytic transglycosylase, catalytic YP_980770.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: pol:Bpro_0653 5-formyltetrahydrofolate cyclo-ligase YP_980771.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1086 transcriptional regulator, LysR family YP_980772.1 KEGG: rfr:Rfer_1085 hypothetical protein YP_980773.1 PFAM: BLUF domain protein; KEGG: pol:Bpro_0667 sensors of blue-light using FAD YP_980774.1 PFAM: cyclic nucleotide-binding; KEGG: mfa:Mfla_1734 transcriptional regulator, Crp/Fnr family YP_980775.1 KEGG: pol:Bpro_0671 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase YP_980776.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_0674 transcriptional regulator, AsnC family YP_980777.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_980778.1 PFAM: transposase, IS4 family protein; KEGG: sal:Sala_0677 transposase, IS4 YP_980779.1 PFAM: Rhodanese domain protein; KEGG: bxe:Bxe_B1556 hypothetical protein YP_980780.1 KEGG: bxe:Bxe_B1555 serine O-acetyltransferase YP_980781.1 PFAM: helix-turn-helix domain protein; KEGG: bpm:BURPS1710b_A0364 possible transcriptional regulator, XRE family, cupin domain YP_980782.1 KEGG: bja:blr1916 putative transposase YP_980783.1 KEGG: bxe:Bxe_B1553 hypothetical protein YP_980784.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_C0124 cysteine desulphurases, SufS YP_980785.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: pae:PA3449 putative sulfonate transport system substrate-binding protein YP_980786.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcn:Bcen_6520 binding-protein-dependent transport systems inner membrane component YP_980787.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcn:Bcen_6521 ABC transporter related YP_980788.1 PFAM: luciferase family protein; KEGG: bacterial luciferase family protein YP_980789.1 KEGG: long-chain-fatty-acid--CoA ligase-related protein YP_980790.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: branched-chain amino acid ABC transporter, ATP-binding protein, putative YP_980791.1 PFAM: inner-membrane translocator; KEGG: psp:PSPPH_2369 branched-chain amino acid ABC transporter, permease protein YP_980792.1 PFAM: inner-membrane translocator; KEGG: branched-chain amino acid ABC transporter, permease protein YP_980793.1 KEGG: ppu:PP_2770 hypothetical protein YP_980794.1 PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: psp:PSPPH_2366 acyl-CoA dehydrogenase family protein YP_980795.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: atc:AGR_pAT_773 hypothetical protein YP_980796.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: branched-chain amino acid ABC transporter, ATP-binding protein YP_980797.1 PFAM: sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_3918 sigma-54 specific transcriptional regulator, fis family YP_980798.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pfo:Pfl_3917 acyl-CoA dehydrogenase-like YP_980799.1 PFAM: NADPH-dependent FMN reductase; KEGG: pfo:Pfl_3915 FMN reductase YP_980801.1 PFAM: luciferase family protein; KEGG: bxe:Bxe_B1542 alkanesulfonate monooxygenase YP_980802.1 PFAM: amidohydrolase 2; KEGG: bbr:BB1077 hypothetical protein YP_980803.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: eba:ebA4678 cysteine synthase A YP_980804.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2345 thiosulphate-binding protein YP_980805.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_3918 sigma-54 specific transcriptional regulator, fis family YP_980806.1 KEGG: ccr:CC0217 ThiO:disulfide interchange protein, putative YP_980807.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS02156 putative outer membrane drug efflux lipoprotein YP_980808.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS02155 putative transport transmembrane protein YP_980809.1 PFAM: acriflavin resistance protein; KEGG: rso:RS02154 probable transport transmembrane protein YP_980810.1 PFAM: cytochrome c, class II; KEGG: mag:amb0751 cytochrome c' precursor YP_980811.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rba:RB1022 gluconolactonase YP_980812.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bte:BTH_II0300 bcp YP_980813.1 PFAM: cytochrome c, class I; KEGG: sdn:Sden_3622 cytochrome c, class I YP_980815.1 PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_1146 protein of unknown function DUF1501 YP_980816.1 PFAM: protein of unknown function DUF1549; KEGG: rba:RB2845 hypothetical protein-transmembrane prediction YP_980818.1 KEGG: bcn:Bcen_4344 ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein YP_980819.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_B2062 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit YP_980820.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C0132 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit YP_980821.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A2157 putative ABC sulfate ester transporter, ATPase subunit YP_980822.1 KEGG: bja:bll5801 hypothetical protein YP_980823.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: eba:ebA3526 putative cyctochrome C biogenesis protein YP_980824.1 PFAM: cytochrome C biogenesis protein; KEGG: reu:Reut_B4772 cytochrome c biogenesis protein YP_980825.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: dar:Daro_3997 periplasmic protein thiol:disulfide oxidoreductase DsbE YP_980826.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: neu:NE0768 cytochrome c-type biogenesis protein (CcmF) YP_980827.1 PFAM: CcmE/CycJ protein; KEGG: net:Neut_0060 CcmE/CycJ protein YP_980828.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: nmu:Nmul_A1212 heme exporter protein CcmC YP_980829.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: nmu:Nmul_A1216 heme exporter protein CcmB YP_980830.1 KEGG: neu:NE0764 ABC superfamily (atp_bind), heme exporter protein, cytochrome c-type biogenesis protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase YP_980831.1 PFAM: cytochrome B561; KEGG: dar:Daro_3282 cytochrome b561, bacterial YP_980832.1 KEGG: ttj:TTHA0836 rhodanese-like domain protein YP_980833.1 PFAM: transposase, IS4 family protein; KEGG: ccr:CC2592 ISCc1, transposase OrfB YP_980834.1 KEGG: bja:blr1916 putative transposase YP_980835.1 PFAM: phage Tail Collar domain protein; KEGG: mlo:mll4441 microcystin dependent protein MdpB YP_980837.1 KEGG: plu:plu4334 hypothetical protein YP_980838.1 PFAM: FAD linked oxidase domain protein; KEGG: sco:SCO5857 FAD-dependent oxidoreductase YP_980839.1 PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB0660 hypothetical protein YP_980840.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: rso:RS03175 putative transferase protein YP_980841.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: nar:Saro_2815 6-phosphogluconate dehydrogenase, NAD-binding YP_980842.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: nar:Saro_0179 transcriptional regulator, GntR family YP_980843.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3119 transcriptional regulator, MarR family YP_980844.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3116 twin-arginine translocation pathway signal YP_980845.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_980846.1 PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0275 amidohydrolase 2 YP_980847.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bja:bll6212 transcriptional regulatory protein YP_980848.1 KEGG: xac:XAC0352 hypothetical protein YP_980849.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_5958 major facilitator family transporter, putative YP_980850.1 PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein YP_980851.1 PFAM: Carotenoid oxygenase; KEGG: ana:all1106 similar to neoxanthin cleavage enzyme YP_980852.1 KEGG: bmb:BruAb2_1109 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, hypothetical YP_980853.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB YP_980854.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5807 glyoxalase/bleomycin resistance protein/dioxygenase YP_980855.1 PFAM: regulatory proteins, IclR; Helix-turn-helix, type 11 domain protein; KEGG: reu:Reut_B5810 regulatory protein, IclR YP_980856.1 catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate YP_980857.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065 YP_980858.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr5285 hypothetical protein YP_980859.1 KEGG: rpc:RPC_2961 putative flavoprotein involved in K+ transport YP_980860.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: reu:Reut_B5548 helix-turn-helix, fis-type YP_980861.1 PFAM: helix-turn-helix, HxlR type; KEGG: stm:STM4402 putative transcriptional regulator YP_980862.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: yps:YPTB2423 hypothetical protein YP_980863.1 KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease YP_980864.1 PFAM: Endonuclease I; KEGG: cvi:CV1988 deoxyribonuclease I YP_980867.1 KEGG: bxe:Bxe_B0034 hypothetical protein YP_980868.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0035 putative phage integrase YP_980869.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0036 hypothetical protein YP_980870.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease YP_980871.1 KEGG: aci:ACIAD3407 hypothetical protein YP_980872.1 KEGG: dar:Daro_3554 hypothetical protein YP_980873.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: reu:Reut_B4742 TrkA-N:sodium/hydrogen exchanger YP_980874.1 KEGG: pol:Bpro_1195 hypothetical protein YP_980875.1 PFAM: Transglycosylase-associated protein; KEGG: bba:Bd1857 putative transglycosylase-associated protein YP_980876.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: pol:Bpro_0734 ExsB YP_980877.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0736 protein of unknown function DUF894, DitE YP_980878.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0737 ABC transporter-like YP_980879.1 PFAM: 5-nucleotidase; KEGG: pol:Bpro_0738 5-nucleotidase YP_980880.1 PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_0739 phosphoglycerate mutase YP_980881.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: pol:Bpro_0740 cobalamin 5'-phosphate synthase YP_980882.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: pol:Bpro_0741 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_980883.1 KEGG: pol:Bpro_0742 hypothetical protein YP_980884.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_980885.1 PFAM: OsmC family protein; KEGG: pol:Bpro_0744 OsmC-like protein YP_980886.1 KEGG: pol:Bpro_0745 putative ubiquinone biosynthesis protein YP_980887.1 KEGG: pol:Bpro_0746 outer membrane protein (porin)-like YP_980889.1 PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type YP_980890.1 PFAM: porin, Gram-negative type; KEGG: pol:Bpro_0747 porin, gram-negative type YP_980891.1 KEGG: pol:Bpro_0749 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_980892.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0750 transcriptional regulator, RpiR family YP_980893.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_980894.1 KEGG: pol:Bpro_0752 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_980895.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_980896.1 PFAM: protein of unknown function DUF805; KEGG: pol:Bpro_0755 protein of unknown function DUF805 YP_980897.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_980898.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_980900.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_980901.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_0768 lipid A biosynthesis acyltransferase YP_980902.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_0769 lipid A biosynthesis acyltransferase YP_980903.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_980904.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_0772 cytochrome c, class I YP_980905.1 PFAM: ResB family protein; KEGG: pol:Bpro_0773 ResB-like YP_980906.1 PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_0774 cytochrome c assembly protein YP_980907.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_980908.1 PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: pol:Bpro_0776 ferric reductase-like transmembrane component-like YP_980909.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pol:Bpro_0777 diaminopimelate decarboxylase YP_980910.1 PFAM: Frataxin family protein; KEGG: pol:Bpro_0779 frataxin-like YP_980911.1 KEGG: pol:Bpro_0780 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_980912.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM YP_980913.1 PFAM: Fimbrial assembly family protein; KEGG: pol:Bpro_0782 fimbrial assembly YP_980914.1 PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO YP_980915.1 PFAM: Pilus assembly protein, PilQ; KEGG: pol:Bpro_0784 pilus assembly protein, PilQ YP_980916.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: pol:Bpro_0785 type II and III secretion system protein YP_980917.1 KEGG: sdn:Sden_3069 hypothetical protein YP_980918.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_980919.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_980920.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_980921.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0789 extracellular ligand-binding receptor YP_980922.1 PFAM: protein of unknown function DUF1568; KEGG: pol:Bpro_0790 protein of unknown function DUF1568 YP_980923.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: pol:Bpro_0791 glutamate synthase (ferredoxin) YP_980924.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_980925.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2935 ABC transporter related YP_980926.1 PFAM: protein of unknown function DUF140; KEGG: rfr:Rfer_2936 protein of unknown function DUF140 YP_980927.1 PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0795 mammalian cell entry related YP_980928.1 PFAM: VacJ family lipoprotein; KEGG: pol:Bpro_0796 VacJ-like lipoprotein YP_980929.1 PFAM: toluene tolerance family protein; KEGG: pol:Bpro_0797 toluene tolerance YP_980930.1 KEGG: pol:Bpro_0798 anti-sigma-factor antagonist (STAS) domain protein YP_980931.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0799 ABC transporter related YP_980932.1 PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0800 ABC-2 YP_980933.1 PFAM: BolA family protein; KEGG: pol:Bpro_0801 BolA-like protein YP_980934.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_980935.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_980936.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_980937.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_980938.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_980939.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_980940.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_980941.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_980942.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_980943.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_980944.1 KEGG: rfr:Rfer_2954 putative transmembrane protein YP_980945.1 PFAM: histidine triad (HIT) protein; KEGG: pol:Bpro_0813 histidine triad (HIT) protein YP_980946.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_980947.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pol:Bpro_0815 twin-arginine translocation protein TatB YP_980948.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pol:Bpro_0816 sec-independent protein translocase TatC YP_980949.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pol:Bpro_0817 peptidase S1 and S6, chymotrypsin/Hap YP_980950.1 PFAM: protein of unknown function DUF34; KEGG: pol:Bpro_0818 protein of unknown function DUF34 YP_980951.1 KEGG: pol:Bpro_0819 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_980952.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_980953.1 KEGG: pol:Bpro_0821 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein YP_980954.1 PFAM: Cytochrome b/b6, N-terminal domain; KEGG: pol:Bpro_0822 cytochrome b/b6-like YP_980955.1 PFAM: cytochrome c1; KEGG: pol:Bpro_0823 cytochrome c1 YP_980956.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_0824 glutathione S-transferase-like YP_980957.1 PFAM: Stringent starvation protein B; KEGG: pol:Bpro_0825 stringent starvation protein B YP_980958.1 KEGG: pol:Bpro_0826 hypothetical protein YP_980959.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2207 ABC efflux transporter, ATP-binding protein YP_980960.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4137 uncharacterized protein UPF0065 YP_980961.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: bja:blr6189 hypothetical protein YP_980962.1 KEGG: pfl:PFL_2209 hypothetical protein YP_980963.1 PFAM: ABC-2 type transporter; KEGG: sil:SPO1510 efflux ABC transporter, permease protein YP_980964.1 KEGG: dar:Daro_1025 hypothetical protein YP_980965.1 PFAM: beta-lactamase domain protein; KEGG: pfl:PFL_2220 hydrolase, putative YP_980966.1 PFAM: Pyrrolo-quinoline quinone; KEGG: reu:Reut_A1784 pyrrolo-quinoline quinone YP_980968.1 PFAM: cytochrome c, class I; KEGG: mfa:Mfla_2196 cytochrome c, class I YP_980969.1 TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; KEGG: bxe:Bxe_B2470 pyrroloquinoline quinone synthesis E YP_980970.1 PFAM: coenzyme PQQ synthesis D; KEGG: bxe:Bxe_B2469 pyrroloquinoline quinone synthesis D YP_980971.1 Required in the synthesis of PPQ, but its exact function is unknown YP_980972.1 possibly involved in transport of pyrroloquinoline quinone transport YP_980973.1 PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_B2466 putative proline iminopeptidase YP_980974.1 PFAM: beta-lactamase domain protein; KEGG: rsp:RSP_2589 hypothetical protein YP_980975.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: rme:Rmet_5127 sigma54 specific transcriptional regulator with GAF sensor, fis family YP_980976.1 KEGG: reu:Reut_A1777 cytochrome c-type protein YP_980977.1 SMART: extracellular solute-binding protein, family 3; KEGG: reu:Reut_A1776 extracellular solute-binding protein, family 3 YP_980978.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_980979.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_980980.1 PFAM: protein of unknown function DUF815; KEGG: pol:Bpro_0830 protein of unknown function DUF815 YP_980981.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_0831 NUDIX hydrolase YP_980982.1 PFAM: Patatin; KEGG: pol:Bpro_2089 patatin YP_980983.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cvi:CV4242 hypothetical protein YP_980984.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0832 lytic transglycosylase, catalytic YP_980985.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_980986.1 hydrolyzes diadenosine polyphosphate YP_980987.1 KEGG: pol:Bpro_0835 hypothetical protein YP_980988.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_980989.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_980990.1 involved in the peptidyltransferase reaction during translation YP_980991.1 PFAM: ribosomal protein L21; KEGG: pol:Bpro_0839 ribosomal protein L21 YP_980992.1 PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_0840 trans-hexaprenyltranstransferase YP_980993.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rfr:Rfer_2496 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_980994.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: rfr:Rfer_0544 general secretion pathway protein F YP_980995.1 KEGG: rfr:Rfer_0543 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_980996.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pol:Bpro_1329 type II and III secretion system protein YP_980997.1 KEGG: rfr:Rfer_0541 putative general secretory pathway N transmembrane protein YP_980998.1 KEGG: pol:Bpro_1327 hypothetical protein YP_980999.1 KEGG: rfr:Rfer_0539 hypothetical protein YP_981000.1 PFAM: General secretion pathway protein K; KEGG: pol:Bpro_1325 general secretion pathway protein K YP_981001.1 KEGG: rfr:Rfer_0537 methylation YP_981002.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: pol:Bpro_1323 general secretion pathway protein I YP_981003.1 TIGRFAM: general secretion pathway protein H; KEGG: rfr:Rfer_0535 general secretion pathway protein H YP_981004.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rfr:Rfer_0534 general secretion pathway protein G YP_981005.1 KEGG: rfr:Rfer_0533 hypothetical protein YP_981006.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: pol:Bpro_0841 type II secretion system protein E YP_981007.1 PFAM: type II secretion system protein; KEGG: pol:Bpro_0842 type II secretion system protein YP_981008.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: pol:Bpro_0843 prepilin peptidase YP_981009.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_981010.1 PFAM: protein of unknown function DUF1342; KEGG: pol:Bpro_0845 protein of unknown function DUF1342 YP_981011.1 PFAM: protein of unknown function DUF329; KEGG: pol:Bpro_0846 protein of unknown function DUF329 YP_981012.1 KEGG: pol:Bpro_0847 hypothetical protein YP_981013.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: pol:Bpro_0848 glutaredoxin-related protein YP_981014.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_0849 modification methylase, HemK family YP_981015.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_981016.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_981017.1 KEGG: pol:Bpro_0852 hypothetical protein YP_981018.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: pol:Bpro_0858 FAD linked oxidase-like YP_981019.1 PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1289 histidine triad (HIT) protein YP_981020.1 PFAM: protein of unknown function DUF971; KEGG: pol:Bpro_0859 protein of unknown function DUF971 YP_981021.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_0860 ubiquinone/menaquinone biosynthesis methyltransferases YP_981022.1 PFAM: import inner membrane translocase, subunit Tim44; KEGG: pol:Bpro_0861 import inner membrane translocase, subunit Tim44 YP_981023.1 KEGG: pol:Bpro_0862 hypothetical protein YP_981024.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions YP_981025.1 TIGRFAM: putative regulatory protein, FmdB family; KEGG: pol:Bpro_0864 hypothetical protein YP_981026.1 PFAM: protein of unknown function DUF502; KEGG: pol:Bpro_0865 protein of unknown function DUF502 YP_981027.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_981028.1 PFAM: UspA domain protein; KEGG: pol:Bpro_4308 UspA YP_981029.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_4297 PAS/PAC sensor signal transduction histidine kinase YP_981030.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_4296 two component transcriptional regulator, LuxR family YP_981031.1 PFAM: response regulator receiver; KEGG: pol:Bpro_1169 response regulator receiver domain protein (CheY-like) YP_981032.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pol:Bpro_4294 transcriptional regulator, Crp/Fnr family YP_981033.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pol:Bpro_1192 NAD(P)H dehydrogenase (quinone) YP_981034.1 KEGG: pol:Bpro_1203 hypothetical protein YP_981036.1 catalyzes the conversion of ferulic acid to feruloyl-CoA YP_981037.1 KEGG: pol:Bpro_3113 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_981038.1 PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR; KEGG: rfr:Rfer_0271 short-chain dehydrogenase/reductase SDR YP_981039.1 PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0270 4-hydroxybenzoyl-CoA thioesterase YP_981040.1 PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0269 extracellular ligand-binding receptor YP_981041.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0268 inner-membrane translocator YP_981042.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0267 ABC transporter related YP_981043.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0266 ABC transporter related YP_981044.1 KEGG: pol:Bpro_3117 porin, gram-negative type YP_981045.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0198 twin-arginine translocation pathway signal YP_981046.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3118 acyl-CoA dehydrogenase-like YP_981047.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3119 transcriptional regulator, MarR family YP_981048.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_1332 GreA/GreB family elongation factor YP_981049.1 KEGG: pol:Bpro_1333 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_981050.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_981051.1 Essential for recycling GMP and indirectly, cGMP YP_981052.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: pol:Bpro_1336 conserved hypothetical protein 255 YP_981053.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pol:Bpro_1337 serine/threonine protein kinase YP_981054.1 PFAM: protein phosphatase 2C domain protein; KEGG: pol:Bpro_1338 protein serine/threonine phosphatases YP_981055.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_981056.1 KEGG: pol:Bpro_1341 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_981057.1 KEGG: pol:Bpro_1342 hypothetical protein YP_981058.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_981059.1 KEGG: pol:Bpro_0925 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_981060.1 PFAM: PHP C-terminal domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding, class 1; KEGG: rfr:Rfer_0829 PHP-like YP_981061.1 TIGRFAM: ribosomal subunit interface protein; PFAM: Cold-shock protein, DNA-binding; KEGG: rfr:Rfer_3849 putative sigma 54 modulation protein/ribosomal protein S30EA YP_981062.1 PFAM: protein of unknown function DUF59; KEGG: pol:Bpro_0931 putative iron sulfur binding protein YP_981063.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_1077 transcriptional regulator, LysR family YP_981065.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone) YP_981066.1 KEGG: bpm:BURPS1710b_A1716 hypothetical protein YP_981067.1 PFAM: NLP/P60 protein; KEGG: dar:Daro_3747 NLP/P60 YP_981068.1 KEGG: pol:Bpro_0932 hypothetical protein YP_981069.1 KEGG: pol:Bpro_0933 hypothetical protein YP_981070.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3264 4Fe-4S ferredoxin, iron-sulfur binding YP_981071.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: pol:Bpro_0935 cytoplasmic chaperone TorD YP_981072.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pol:Bpro_0937 twin-arginine translocation pathway signal YP_981073.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_0938 4Fe-4S ferredoxin, iron-sulfur binding YP_981074.1 KEGG: pol:Bpro_0939 putative lipoprotein YP_981075.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: pol:Bpro_0940 formate dehydrogenase, gamma subunit YP_981076.1 KEGG: pol:Bpro_0941 hypothetical protein YP_981077.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: pol:Bpro_0942 formate dehydrogenase, subunit FdhD YP_981078.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1763 hypothetical protein YP_981079.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_A1762 short-chain dehydrogenase/reductase SDR YP_981080.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rme:Rmet_4907 fumarylacetoacetate (FAA) hydrolase YP_981081.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2294 uncharacterized protein UPF0065 YP_981082.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: reu:Reut_A1761 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_981083.1 PFAM: Citrate synthase; KEGG: reu:Reut_A1760 citrate synthase YP_981084.1 PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_0944 protein of unknown function DUF214 YP_981085.1 PFAM: globin; KEGG: pol:Bpro_0945 globin YP_981087.1 PFAM: MORN repeat-containing protein; KEGG: lma:LmjF30.3310 hypothetical protein, conserved YP_981088.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1148 ABC transporter related YP_981089.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1149 binding-protein-dependent transport systems inner membrane component YP_981090.1 PFAM: CsbD family protein; KEGG: pol:Bpro_1152 CsbD-like YP_981091.1 KEGG: pol:Bpro_1153 hypothetical protein YP_981093.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sensor histidine kinase/response regulator YP_981094.1 PFAM: protein of unknown function DUF490; KEGG: pol:Bpro_1217 protein of unknown function DUF490 YP_981095.1 PFAM: surface antigen (D15); KEGG: pol:Bpro_1218 surface antigen (D15) YP_981096.1 KEGG: pol:Bpro_1219 hypothetical protein YP_981097.1 KEGG: pol:Bpro_1220 hypothetical protein YP_981098.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1222 ATPase associated with various cellular activities, AAA_5 YP_981099.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_1223 cytochrome c, class I YP_981100.1 KEGG: pol:Bpro_1226 hypothetical protein YP_981101.1 KEGG: pol:Bpro_1227 hypothetical protein YP_981102.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1228 transcriptional regulator, IclR family YP_981103.1 KEGG: pol:Bpro_1229 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_981104.1 KEGG: pol:Bpro_1230 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_981105.1 KEGG: pol:Bpro_1231 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase YP_981106.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_B5588 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR YP_981107.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065 YP_981108.1 PFAM: protein of unknown function UPF0126; KEGG: rme:Rmet_0682 protein of unknown function UPF0126 YP_981109.1 KEGG: xom:XOO_3993 ISXo7 transposase YP_981110.1 transport system that facilitates potassium-efflux YP_981111.1 PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_1240 MaoC-like dehydratase YP_981112.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_1241 RNA methyltransferase TrmH, group 2 YP_981113.1 KEGG: pol:Bpro_1242 hypothetical protein YP_981114.1 KEGG: pol:Bpro_1243 biotin synthesis protein BioC YP_981115.1 KEGG: pol:Bpro_1244 putative transmembrane protein YP_981116.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: pol:Bpro_1245 cytochrome c oxidase, subunit II YP_981117.1 PFAM: cytochrome c oxidase, subunit I; KEGG: pol:Bpro_1246 cytochrome-c oxidase YP_981118.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_981119.1 KEGG: pol:Bpro_1248 hypothetical protein YP_981120.1 PFAM: cytochrome c oxidase, subunit III; KEGG: pol:Bpro_1249 cytochrome c oxidase, subunit III YP_981121.1 KEGG: pol:Bpro_1250 putative transmembrane protein YP_981122.1 KEGG: pol:Bpro_1251 putative transmembrane cytochrome oxidase YP_981123.1 KEGG: pol:Bpro_1252 hypothetical protein YP_981124.1 PFAM: cytochrome oxidase assembly; KEGG: pol:Bpro_1253 cytochrome oxidase assembly YP_981125.1 converts protoheme IX and farnesyl diphosphate to heme O YP_981126.1 PFAM: electron transport protein SCO1/SenC; KEGG: pol:Bpro_1255 electron transport protein SCO1/SenC YP_981127.1 TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; KEGG: pol:Bpro_1256 sigma 32 (RpoH) YP_981128.1 KEGG: pol:Bpro_1272 hypothetical protein YP_981129.1 KEGG: pol:Bpro_1278 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_981130.1 PFAM: peptidase M16 domain protein; KEGG: pol:Bpro_1279 peptidase M16-like YP_981131.1 PFAM: peptidase M16 domain protein; KEGG: pol:Bpro_1280 peptidase M16-like YP_981132.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: pol:Bpro_1281 conserved hypothetical protein 95 YP_981133.1 KEGG: pol:Bpro_1282 coenzyme A biosynthesis protein; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase YP_981134.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_1283 4Fe-4S ferredoxin, iron-sulfur binding YP_981135.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_981136.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_981137.1 KEGG: pol:Bpro_1293 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_981138.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_981139.1 KEGG: pol:Bpro_1295 putative lipoprotein YP_981140.1 SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1296 tetratricopeptide TPR_4 YP_981141.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_981142.1 KEGG: pol:Bpro_1298 hypothetical protein YP_981143.1 KEGG: pol:Bpro_1299 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_981144.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: pol:Bpro_1300 uncharacterised P-loop ATPase protein UPF0042 YP_981145.1 KEGG: pol:Bpro_1301 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; SMART: AAA ATPase YP_981146.1 catalyzes the phosphorylation of NAD to NADP YP_981147.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_981148.1 converts dATP to dAMP and pyrophosphate YP_981149.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_0868 phospholipase D/transphosphatidylase YP_981150.1 PFAM: GTP cyclohydrolase I; KEGG: pol:Bpro_0869 GTP cyclohydrolase I YP_981151.1 PFAM: BLUF domain protein; KEGG: pol:Bpro_0870 sensors of blue-light using FAD YP_981152.1 KEGG: pol:Bpro_0871 hypothetical protein YP_981153.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0874 transport-associated YP_981154.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0875 transport-associated YP_981155.1 KEGG: pol:Bpro_0876 hypothetical protein YP_981156.1 KEGG: pol:Bpro_0877 hypothetical protein YP_981157.1 KEGG: pol:Bpro_0878 hypothetical protein YP_981158.1 PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0879 protein of unknown function DUF1328 YP_981159.1 PFAM: ATP-binding region, ATPase domain protein domain protein; CHASE3 domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_0880 multi-sensor signal transduction histidine kinase YP_981160.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_0881 two component transcriptional regulator, LuxR family YP_981161.1 PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like) YP_981162.1 PFAM: AsmA family protein; KEGG: pol:Bpro_0883 AsmA YP_981163.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pol:Bpro_0884 UBA/ThiF-type NAD/FAD binding fold YP_981164.1 KEGG: pol:Bpro_0885 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_981165.1 KEGG: pol:Bpro_0886 phosphoglycerate mutase 1 family; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase YP_981166.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_0887 rhodanese-like YP_981167.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: pol:Bpro_0888 glutaredoxin, GrxC YP_981168.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_981169.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_981170.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_0891 cupin 2, conserved barrel YP_981171.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_981172.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_981173.1 KEGG: tbd:Tbd_2741 hypothetical protein YP_981174.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_981175.1 KEGG: pol:Bpro_0902 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_981176.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_981177.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: pol:Bpro_0904 para-aminobenzoate synthase, component I YP_981178.1 TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: bxe:Bxe_A4178 protein export chaperone SecB YP_981179.1 KEGG: rme:Rmet_4107 acetone carboxylase gamma subunit YP_981180.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: dar:Daro_1019 hydantoinase B/oxoprolinase YP_981181.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: reu:Reut_C6172 hydantoinase/oxoprolinase:hydantoinaseoxoprolina se, N-terminal YP_981182.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: eba:ebA4722 sigma-54 dependent transcriptional activator YP_981183.1 PFAM: DTW domain containing protein; KEGG: pfo:Pfl_1459 DTW YP_981184.1 KEGG: reu:Reut_B4925 malonate decarboxylase alpha subunit YP_981185.1 PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: reu:Reut_B4926 triphosphoribosyl-dephospho-CoA synthase YP_981186.1 acyl carrier protein of malonate decarboxylase YP_981187.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A YP_981188.1 PFAM: malonate decarboxylase gamma subunit; KEGG: reu:Reut_B4929 malonate decarboxylase gamma subunit YP_981189.1 Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein YP_981190.1 PFAM: acyl transferase domain protein; KEGG: reu:Reut_B4931 acyl transferase region YP_981191.1 PFAM: malonate/sodium symporter MadM subunit; KEGG: pae:PA0216 probable transporter YP_981192.1 PFAM: malonate transporter MadL subunit; KEGG: pae:PA0215 probable transporter YP_981193.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B1014 transcriptional regulator, LysR family YP_981194.1 KEGG: pol:Bpro_0905 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_981195.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: pol:Bpro_0906 chromosome segregation and condensation protein ScpA YP_981196.1 KEGG: pol:Bpro_0907 hypothetical protein YP_981197.1 KEGG: pol:Bpro_0908 putative lipoprotein YP_981198.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dar:Daro_0571 sulphate anion transporter YP_981199.1 PFAM: peptidase S14, ClpP; KEGG: sdn:Sden_3249 peptidase S14, ClpP YP_981201.1 KEGG: pfo:Pfl_0744 hypothetical protein YP_981202.1 KEGG: rso:RSc2483 hypothetical protein YP_981208.1 PFAM: phage integrase family protein; KEGG: pol:Bpro_0966 phage integrase YP_981209.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: pol:Bpro_1347 urease accessory protein UreG YP_981210.1 PFAM: Urease accessory protein UreF; KEGG: pol:Bpro_1348 urease accessory protein UreF YP_981211.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_981212.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_981213.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_981214.1 PFAM: HupE/UreJ protein; KEGG: cvi:CV1191 urease accessory protein YP_981215.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_981216.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1353 periplasmic sensor hybrid histidine kinase YP_981217.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_1354 two component transcriptional regulator, LuxR family YP_981218.1 KEGG: pol:Bpro_1355 hypothetical protein YP_981219.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_981220.1 involved in the transport of C4-dicarboxylates across the membrane YP_981222.1 PFAM: DEAD_2 domain protein; SMART: DEXDc2; helicase c2; KEGG: pol:Bpro_1361 helicase C2 YP_981223.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: pol:Bpro_1363 putative signal transduction protein with EFhand domain YP_981224.1 KEGG: pol:Bpro_1377 hypothetical protein YP_981225.1 PFAM: protein of unknown function UPF0118; KEGG: rpc:RPC_2083 protein of unknown function UPF0118 YP_981227.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fra:Francci3_3228 endonuclease/exonuclease/phosphatase YP_981228.1 PFAM: protein of unknown function DUF107; KEGG: pol:Bpro_3548 protein of unknown function DUF107 YP_981229.1 PFAM: band 7 protein; KEGG: pol:Bpro_3547 band 7 protein YP_981230.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: bja:blr1249 hypothetical protein YP_981231.1 PFAM: protein of unknown function DUF1016; KEGG: lpn:lpg1084 hypothetical protein YP_981232.1 KEGG: bxe:Bxe_A3975 transcriptional regulator, XRE family YP_981233.1 KEGG: tde:TDE1620 hypothetical protein YP_981234.1 KEGG: tde:TDE1621 predicted ATP-dependent endonuclease of the OLD family YP_981235.1 KEGG: pol:Bpro_1393 twin-arginine translocation pathway signal YP_981236.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1394 inner-membrane translocator YP_981237.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1395 inner-membrane translocator YP_981238.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1396 ABC transporter related YP_981239.1 KEGG: pol:Bpro_4480 hypothetical protein YP_981240.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1397 ABC transporter related YP_981241.1 KEGG: pol:Bpro_1413 hypothetical protein YP_981242.1 PFAM: Urease accessory protein UreD; KEGG: pol:Bpro_1414 urease accessory protein UreD YP_981243.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_981244.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_981245.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1417 ABC transporter related YP_981246.1 KEGG: pol:Bpro_1418 hypothetical protein YP_981248.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_981249.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1427 twin-arginine translocation pathway signal YP_981250.1 KEGG: pol:Bpro_1428 hypothetical protein YP_981251.1 PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_1429 protein of unknown function DUF182 YP_981252.1 KEGG: pol:Bpro_1431 putative substrate-binding periplasmic (PBP) ABC transporter protein YP_981253.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0441 transcriptional regulator, LysR family YP_981254.1 KEGG: rfr:Rfer_0845 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_981255.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065 YP_981256.1 PFAM: MOFRL domain protein; KEGG: pol:Bpro_1434 hydroxypyruvate reductase YP_981257.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0842 hypothetical protein YP_981258.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: bbr:BB1109 FMN-dependent dehydrogenase YP_981259.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3347 uncharacterized protein UPF0065 YP_981260.1 PFAM: aldehyde dehydrogenase; KEGG: bja:blr6417 vanillin: NAD oxidoreductase YP_981261.1 catalyzes the formation of benzaldehyde from benzoylformate YP_981262.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2491 transcriptional regulator, LysR family YP_981263.1 KEGG: bbr:BB2499 hypothetical protein YP_981264.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_2092 UbiE/COQ5 methyltransferase YP_981265.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_1441 transcriptional regulator, XRE family YP_981266.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: pol:Bpro_1440 extracellular solute-binding protein, family 3 YP_981267.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1439 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_981268.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1438 ABC transporter related YP_981269.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1437 FAD dependent oxidoreductase YP_981270.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_1916 hypothetical protein YP_981271.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_2050 cytochrome c, class I YP_981272.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pol:Bpro_1480 xanthine dehydrogenase YP_981273.1 PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_1481 molybdopterin dehydrogenase, FAD-binding YP_981274.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1483 ABC transporter related YP_981275.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1484 inner-membrane translocator YP_981276.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1485 inner-membrane translocator YP_981277.1 PFAM: basic membrane lipoprotein; KEGG: pol:Bpro_1486 basic membrane lipoprotein YP_981278.1 catalyzes the formation of inosine from adenosine YP_981279.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pol:Bpro_1488 protein of unknown function DUF1228 YP_981281.1 KEGG: dar:Daro_3465 hypothetical protein YP_981282.1 PFAM: basic membrane lipoprotein; KEGG: rfr:Rfer_3296 basic membrane lipoprotein YP_981283.1 KEGG: pol:Bpro_1494 hypothetical protein YP_981284.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: pol:Bpro_1495 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_981285.1 Catalyzes the deamination of guanine YP_981287.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_981288.1 KEGG: rfr:Rfer_3771 integral membrane protein YP_981289.1 KEGG: rpc:RPC_3825 hypothetical protein YP_981290.1 PFAM: zinc finger, DksA/TraR C4-type; KEGG: rfr:Rfer_0615 transcriptional regulators, TraR/DksA family YP_981291.1 KEGG: rfr:Rfer_0009 integral membrane protein YP_981292.1 KEGG: rfr:Rfer_0008 hypothetical protein YP_981293.1 KEGG: tbd:Tbd_0127 outer membrane protein YP_981294.1 KEGG: pol:Bpro_1510 hypothetical protein YP_981295.1 PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: rfr:Rfer_2725 protein of unknown function, zinc metallopeptidase putative YP_981296.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcn:Bcen_3232 transposase, IS605 OrfB YP_981297.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: pol:Bpro_1892 UDP-glucose 4-epimerase YP_981298.1 PFAM: transglutaminase domain protein; KEGG: pol:Bpro_0068 transglutaminase-like YP_981299.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpc:RPC_0967 transglutaminase-like YP_981300.1 KEGG: rba:RB2398 hypothetical protein YP_981301.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pfl:PFL_0589 transglutaminase domain protein YP_981302.1 PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3009 protein of unknown function DUF403 YP_981303.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rru:Rru_A2558 transglutaminase-like YP_981304.1 KEGG: rfr:Rfer_3368 hypothetical protein YP_981305.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_981306.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: pol:Bpro_1587 peptidase M1, alanyl aminopeptidase YP_981307.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: tbd:Tbd_0921 peptide chain release factor 2 YP_981308.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: psb:Psyr_2448 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal YP_981309.1 PFAM: CheB methylesterase; KEGG: pfl:PFL_3249 methylesterase, CheB-like YP_981310.1 PFAM: MCP methyltransferase, CheR-type; KEGG: pfl:PFL_3250 chemotaxis protein methyltransferase, CheR-like YP_981311.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: pfl:PFL_3251 sensor histidine kinase/response regulator YP_981312.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1589 alpha/beta hydrolase fold YP_981313.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: pol:Bpro_1591 OmpA/MotB YP_981314.1 PFAM: aldo/keto reductase; KEGG: pol:Bpro_1592 aldo/keto reductase YP_981315.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pol:Bpro_1593 hypothetical protein YP_981316.1 PFAM: protein of unknown function DUF205; KEGG: pol:Bpro_1594 protein of unknown function DUF205 YP_981317.1 KEGG: pol:Bpro_1595 hypothetical protein YP_981318.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_981319.1 KEGG: pol:Bpro_1597 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_981320.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_981321.1 PFAM: protein of unknown function DUF1255; KEGG: pol:Bpro_1600 protein of unknown function DUF1255 YP_981322.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rso:RSc2361 probable RNA polymerase sigma-e factor sigma-24 homolog transcription regulator protein YP_981323.1 KEGG: rso:RSc2362 probable transmembrane protein YP_981324.1 PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_1601 17 kDa surface antigen YP_981325.1 PFAM: arsenate reductase and related; KEGG: pol:Bpro_1602 hypothetical protein YP_981326.1 KEGG: pol:Bpro_1603 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_981327.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1604 FolC bifunctional protein YP_981328.1 PFAM: Sporulation domain protein; KEGG: pol:Bpro_1605 sporulation related YP_981329.1 PFAM: Colicin V production protein; KEGG: pol:Bpro_1606 colicin V production protein YP_981330.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_981331.1 KEGG: rfr:Rfer_2682 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_981332.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_981333.1 KEGG: nha:Nham_2838 zinc finger, SWIM-type YP_981334.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nha:Nham_2839 SNF2-related YP_981335.1 PFAM: Ion transport 2 domain protein,; KEGG: pol:Bpro_3379 ion transport 2 YP_981336.1 PFAM: protein of unknown function DUF1345; KEGG: pol:Bpro_1635 protein of unknown function DUF1345 YP_981337.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_1636 protein of unknown function DUF6, transmembrane YP_981338.1 KEGG: pol:Bpro_1637 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylguanine DNA methyltransferase, ribonuclease domain protein YP_981339.1 PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: pol:Bpro_1638 transcriptional regulator, AraC family YP_981340.1 amylomaltase; acts to release glucose from maltodextrins YP_981341.1 KEGG: gbe:GbCGDNIH1_2172 isoamylase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_981342.1 KEGG: yps:YPTB3787 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain YP_981343.1 KEGG: rfr:Rfer_0511 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35 YP_981344.1 KEGG: stt:t3984 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase YP_981345.1 TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: bxe:Bxe_A2935 putative glycogen synthase YP_981346.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pol:Bpro_1639 phosphomannomutase YP_981347.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; KEGG: pol:Bpro_1640 lipopolysaccharide heptosyltransferase I YP_981348.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: pol:Bpro_1641 three-deoxy-D-manno-octulosonic-acid transferase-like YP_981349.1 PFAM: protein of unknown function DUF1486; KEGG: reu:Reut_A1634 hypothetical protein YP_981350.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3788 short-chain dehydrogenase/reductase SDR YP_981353.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_0167 short-chain dehydrogenase/reductase SDR YP_981354.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_981355.1 KEGG: pol:Bpro_2996 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_981356.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO0680 glyoxalase family protein YP_981357.1 KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_981358.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_C6250 hypothetical protein YP_981359.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C6960 L-carnitine dehydratase/bile acid-inducible protein F YP_981360.1 PFAM: pyruvate carboxyltransferase; KEGG: reu:Reut_C6248 pyruvate carboxyltransferase YP_981361.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2354 transcriptional regulator, LysR family YP_981363.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC YP_981364.1 SMART: Rhodanese domain protein; KEGG: pol:Bpro_1665 rhodanese-like YP_981365.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; O-methyltransferase, family 3; Methyltransferase type 11; KEGG: pol:Bpro_1666 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_981366.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_1669 transcriptional regulator, TetR family YP_981367.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_3421 glucarate dehydratase YP_981368.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_3418 transcriptional regulator, LacI family YP_981369.1 PFAM: protein of unknown function DUF218; KEGG: pol:Bpro_1670 protein of unknown function DUF218 YP_981370.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_1671 acyl-CoA dehydrogenase-like YP_981371.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_1672 transcriptional regulator, LysR family YP_981372.1 KEGG: pol:Bpro_1674 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_981373.1 PFAM: transposase, IS4 family protein; KEGG: lpf:lpl2868 hypothetical protein YP_981375.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_5572 transposase IS116/IS110/IS902 YP_981376.1 KEGG: cef:CE0351 hypothetical protein YP_981377.1 KEGG: psp:PSPPH_4785 probable ATP-binding protein YP_981378.1 PFAM: CBS domain containing protein; KEGG: rfr:Rfer_0389 putative signal-transduction protein with CBS domains YP_981379.1 PFAM: periplasmic solute binding protein; KEGG: rfr:Rfer_2051 periplasmic solute binding protein YP_981380.1 PFAM: ABC-3 protein; KEGG: rfr:Rfer_2052 ABC-3 YP_981381.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2053 ABC transporter related YP_981382.1 KEGG: pol:Bpro_1677 putative ferric uptake regulator, FUR family YP_981383.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1678 ABC transporter related YP_981384.1 PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_1679 protein of unknown function DUF214 YP_981385.1 KEGG: pol:Bpro_1680 hypothetical protein YP_981386.1 KEGG: pol:Bpro_1681 hypothetical protein YP_981387.1 PFAM: protein of unknown function DUF486; KEGG: pol:Bpro_1685 protein of unknown function DUF486 YP_981388.1 PFAM: protein of unknown function DUF47; KEGG: pol:Bpro_1686 protein of unknown function DUF47 YP_981389.1 PFAM: phosphate transporter; KEGG: pol:Bpro_1687 phosphate transporter YP_981390.1 PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_3224 protein of unknown function DUF214 YP_981391.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3214 ABC transporter related YP_981392.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_981393.1 KEGG: pol:Bpro_3210 hypothetical protein YP_981394.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: pol:Bpro_3209 DNA mismatch repair protein MutL YP_981395.1 KEGG: pol:Bpro_4520 conserved hypothetical protein; putative signal peptide YP_981396.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA YP_981397.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: mag:amb2306 putative GTPase YP_981398.1 KEGG: bur:Bcep18194_B1208 hypothetical protein YP_981399.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: fra:Francci3_2242 hydantoinase B/oxoprolinase YP_981400.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bur:Bcep18194_B1206 5-oxoprolinase (ATP-hydrolyzing) YP_981401.1 KEGG: bur:Bcep18194_B1205 acetone carboxylase gamma subunit-like YP_981402.1 PFAM: Hydantoinase/oxoprolinase; KEGG: bur:Bcep18194_B1204 hydantoinase/oxoprolinase YP_981403.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: eba:ebA4722 sigma-54 dependent transcriptional activator YP_981404.1 KEGG: pol:Bpro_3208 DedA protein (DSG-1 protein) YP_981405.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr1288 probable long-chain-fatty-acid-CoA ligase YP_981406.1 PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3200 17 kDa surface antigen YP_981407.1 PFAM: cell wall hydrolase/autolysin; KEGG: pol:Bpro_3199 N-acetylmuramoyl-L-alanine amidase YP_981408.1 PFAM: protein of unknown function UPF0079; KEGG: pol:Bpro_3198 protein of unknown function UPF0079 YP_981409.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pol:Bpro_3197 4Fe-4S cluster binding YP_981410.1 PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_3195 auxin efflux carrier YP_981411.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pol:Bpro_3191 tyrosine recombinase XerD YP_981412.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_3190 cyclopropane-fatty-acyl-phospholipid synthase YP_981413.1 KEGG: pol:Bpro_4705 hypothetical protein YP_981414.1 PFAM: protein of unknown function DUF455; KEGG: pol:Bpro_3189 protein of unknown function DUF455 YP_981415.1 KEGG: pol:Bpro_3188 transferase hexapeptide repeat YP_981416.1 PFAM: Hsp33 protein; KEGG: pol:Bpro_3187 HSP33 protein YP_981417.1 KEGG: xfa:XF1486 hypothetical protein YP_981418.1 KEGG: pol:Bpro_3186 hypothetical protein YP_981419.1 PFAM: Septum formation initiator; KEGG: pol:Bpro_3185 septum formation initiator YP_981420.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_981421.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_981422.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_981423.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: pol:Bpro_3180 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_981424.1 catalyzes the formation of dUMP from dUTP YP_981425.1 PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3177 17 kDa surface antigen YP_981426.1 KEGG: pol:Bpro_3176 putative fkbp-type peptidyl-prolyl cis-trans isomerase (rotamase) protein YP_981427.1 PFAM: Cupin 4 family protein; KEGG: pol:Bpro_3175 cupin 4 YP_981428.1 KEGG: pol:Bpro_3174 hypothetical protein YP_981429.1 KEGG: dar:Daro_0849 hypothetical protein YP_981430.1 PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_3172 beta-lactamase-like YP_981431.1 PFAM: NlpBDapX family lipoprotein; KEGG: pol:Bpro_3171 NlpBDapX lipoprotein YP_981432.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_981433.1 KEGG: pol:Bpro_3169 methyltransferase type 11 YP_981434.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3167 major facilitator superfamily MFS_1 YP_981435.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_981436.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_3164 lytic transglycosylase, catalytic YP_981437.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_981438.1 KEGG: noc:Noc_1885 hypothetical protein YP_981439.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; peptidase C14, caspase catalytic subunit p20; KEGG: noc:Noc_1884 peptidase C14, caspase catalytic subunit P20 YP_981440.1 PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_3162 endoribonuclease L-PSP YP_981441.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: pol:Bpro_3158 DNA internalization-related competence protein ComEC/Rec2 YP_981442.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pol:Bpro_3157 protein of unknown function DUF404 YP_981443.1 PFAM: protein of unknown function DUF403; KEGG: pol:Bpro_3156 protein of unknown function DUF403 YP_981444.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pol:Bpro_3155 transglutaminase-like YP_981445.1 PFAM: Alkaline phosphatase; KEGG: hch:HCH_01191 phosphodiesterase/alkaline phosphatase D YP_981446.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbr:BB0460 zinc-binding dehydrogenase YP_981447.1 KEGG: tdn:Tmden_0240 conserved hypothetical protein, putative DNA helicase YP_981448.1 TIGRFAM: prevent-host-death family protein; KEGG: rfr:Rfer_0623 prevent-host-death protein YP_981449.1 PFAM: PilT protein domain protein; KEGG: rpd:RPD_1602 PilT protein-like YP_981450.1 PFAM: KWG Leptospira repeat protein; KEGG: ana:all4040 unknown protein YP_981451.1 KEGG: hch:HCH_04341 hypothetical protein YP_981452.1 TIGRFAM: lytic murein transglycosylase B; KEGG: pol:Bpro_3149 lytic murein transglycosylase B YP_981453.1 PFAM: transglutaminase domain protein; KEGG: pol:Bpro_3148 transglutaminase-like YP_981454.1 PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3147 protein of unknown function DUF58 YP_981455.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_3146 ATPase associated with various cellular activities, AAA_3 YP_981456.1 PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3145 histone deacetylase superfamily YP_981457.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A0993 enoyl-CoA hydratase/isomerase family protein YP_981458.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_3144 MscS mechanosensitive ion channel YP_981459.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: pol:Bpro_3143 electron transfer flavoprotein beta-subunit YP_981460.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: pol:Bpro_3142 electron transfer flavoprotein, alpha subunit YP_981461.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like YP_981462.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: pol:Bpro_3140 2-nitropropane dioxygenase, NPD YP_981463.1 KEGG: rfr:Rfer_3472 hypothetical protein YP_981464.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pol:Bpro_3130 sulfatase YP_981465.1 PFAM: putative esterase; KEGG: rfr:Rfer_0122 carboxylesterase YP_981466.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_3129 alcohol dehydrogenase, zinc-binding YP_981467.1 PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_2006 RNA-binding S4 YP_981468.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: pol:Bpro_2007 periplasmic sensor signal transduction histidine kinase YP_981469.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2008 two component transcriptional regulator, winged helix family YP_981470.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2009 uncharacterized protein UPF0065 YP_981471.1 KEGG: pol:Bpro_2010 hypothetical protein YP_981472.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane YP_981473.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2012 twin-arginine translocation pathway signal YP_981474.1 PFAM: Fibronectin, type III domain protein; KEGG: cvi:CV0172 poly (3-hydroxybutyrate) depolymerase YP_981475.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein YP_981476.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1 YP_981477.1 PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR; KEGG: pol:Bpro_3536 short-chain dehydrogenase/reductase SDR YP_981478.1 PFAM: UbiA prenyltransferase; KEGG: eba:ebA3963 predicted 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_981479.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bxe:Bxe_C0962 hypothetical protein YP_981480.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_3520 DEAD/DEAH box helicase-like YP_981481.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_981482.1 PFAM: protein of unknown function DUF1415; KEGG: pol:Bpro_3518 protein of unknown function DUF1415 YP_981483.1 KEGG: rfr:Rfer_2170 hypothetical protein YP_981484.1 KEGG: pol:Bpro_2111 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_981485.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_4157 ATPase, E1-E2 type YP_981486.1 KEGG: pol:Bpro_3507 TRAP transporter solute receptor, TAXI family YP_981488.1 KEGG: rfr:Rfer_0421 hypothetical protein YP_981489.1 KEGG: pol:Bpro_1174 hypothetical protein YP_981490.1 KEGG: pol:Bpro_1175 hypothetical protein YP_981491.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pol:Bpro_1176 isoprenylcysteine carboxyl methyltransferase YP_981493.1 KEGG: pol:Bpro_1181 hypothetical protein YP_981494.1 KEGG: rfr:Rfer_0418 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_981495.1 PFAM: protein of unknown function DUF411; KEGG: pol:Bpro_3488 protein of unknown function DUF411 YP_981496.1 PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain YP_981497.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal YP_981498.1 KEGG: bxe:Bxe_B2295 putative outer membrane efflux protein involved in copper resistance YP_981501.1 KEGG: pol:Bpro_0179 hypothetical protein YP_981503.1 PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: reu:Reut_A2791 ion transport protein YP_981504.1 PFAM: YaeQ family protein; KEGG: pol:Bpro_3468 YaeQ YP_981505.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_981506.1 KEGG: pol:Bpro_3461 hypothetical protein YP_981507.1 PFAM: protein of unknown function DUF427; KEGG: pol:Bpro_3460 protein of unknown function DUF427 YP_981508.1 PFAM: UspA domain protein; KEGG: pol:Bpro_3459 UspA YP_981509.1 PFAM: protein of unknown function DUF465; KEGG: cps:CPS_0008 hypothetical protein YP_981510.1 PFAM: protein of unknown function DUF344; KEGG: rme:Rmet_0550 protein of unknown function DUF344 YP_981511.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc1029 short chain dehydrogenase YP_981512.1 PFAM: pseudouridine synthase; KEGG: pol:Bpro_3457 pseudouridine synthase YP_981513.1 KEGG: pol:Bpro_3456 hypothetical protein YP_981514.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB YP_981515.1 PFAM: transposase IS200-family protein; KEGG: hpy:HP1008 IS200 insertion sequence from SARA17 YP_981516.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_3455 NADH dehydrogenase YP_981517.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_3450 major facilitator superfamily MFS_1 YP_981518.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I YP_981519.1 KEGG: pol:Bpro_3448 putative cytochrome c YP_981520.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3438 alpha/beta hydrolase fold YP_981521.1 KEGG: pol:Bpro_3437 hypothetical protein YP_981522.1 PFAM: ferredoxin; KEGG: pol:Bpro_3434 ferredoxin YP_981523.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_3433 GCN5-related N-acetyltransferase YP_981524.1 KEGG: pol:Bpro_3432 hypothetical protein YP_981525.1 PFAM: protein of unknown function DUF808; KEGG: tbd:Tbd_0220 hypothetical protein YP_981526.1 PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR; KEGG: pol:Bpro_0101 short-chain dehydrogenase/reductase SDR YP_981527.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_0102 alcohol dehydrogenase, zinc-binding YP_981528.1 KEGG: pol:Bpro_0106 short-chain dehydrogenase/reductase SDR YP_981529.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_0107 transcriptional regulator, TetR family YP_981530.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB YP_981531.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3431 transcriptional regulator, LysR family YP_981532.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pol:Bpro_3430 alpha/beta hydrolase fold-3 YP_981533.1 KEGG: pol:Bpro_3429 secretion protein HlyD YP_981534.1 KEGG: pol:Bpro_3429 secretion protein HlyD YP_981535.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_3428 hydrophobe/amphiphile efflux-1 HAE1 YP_981536.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3427 RND efflux system, outer membrane lipoprotein, NodT YP_981537.1 PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: pol:Bpro_3426 methyltransferase small YP_981538.1 PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_3425 dihydrouridine synthase, DuS YP_981539.1 KEGG: pol:Bpro_3410 hypothetical protein YP_981540.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine YP_981541.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon YP_981542.1 KEGG: mlo:mlr0720 hypothetical protein YP_981543.1 PFAM: phospholipase/Carboxylesterase; KEGG: pol:Bpro_3402 carboxylesterase YP_981544.1 TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_3399 glutamate--cysteine ligase, monofunctional YP_981545.1 KEGG: rme:Rmet_5275 intradiol ring-cleavage dioxygenase YP_981546.1 KEGG: hypothetical protein YP_981547.1 KEGG: pol:Bpro_3397 hypothetical protein YP_981548.1 PFAM: GTP-binding protein, HSR1-related; KEGG: pol:Bpro_3396 GTP-binding YP_981549.1 KEGG: bcn:Bcen_5665 hypothetical protein YP_981550.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: eba:ebA1694 hypothetical protein YP_981551.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_0177 cyclic nucleotide-binding domain (cNMP-BD) protein YP_981552.1 KEGG: pol:Bpro_0178 cyclic nucleotide-binding domain (cNMP-BD) protein YP_981553.1 KEGG: pol:Bpro_0179 hypothetical protein YP_981554.1 KEGG: bxe:Bxe_C1298 hypothetical protein YP_981555.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: rfr:Rfer_1882 OmpA/MotB YP_981557.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: tte:TTE0684 hypothetical protein YP_981558.1 KEGG: rfr:Rfer_2015 hypothetical protein YP_981559.1 PFAM: heat shock protein Hsp20; KEGG: eba:ebA2730 heat shock protein, HSP20 family YP_981560.1 PFAM: heat shock protein Hsp20; KEGG: mca:MCA1731 heat shock protein, HSP20 family YP_981561.1 KEGG: rfr:Rfer_1390 phosphoesterase, DHHA1 YP_981562.1 KEGG: nmu:Nmul_A1998 nitrite reductase (NO-forming); TIGRFAM: nitrite reductase, copper-containing; PFAM: blue (type 1) copper domain protein; multicopper oxidase, type 2; multicopper oxidase, type 3 YP_981563.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tbd:Tbd_2014 hypothetical protein YP_981564.1 KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein YP_981565.1 KEGG: dar:Daro_2384 hypothetical protein YP_981566.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: eba:ebB180 predicted invasion gene expression up-regulator, SirB YP_981567.1 KEGG: pol:Bpro_3378 hypothetical protein YP_981568.1 TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain; KEGG: pol:Bpro_3369 thioredoxin YP_981569.1 PFAM: cytochrome B561; KEGG: rfr:Rfer_2023 cytochrome b561 YP_981570.1 KEGG: pol:Bpro_3373 putative lipoprotein YP_981571.1 PFAM: pseudouridine synthase; KEGG: tbd:Tbd_0853 pseudouridine synthase, Rsu YP_981572.1 PFAM: Amidohydrolase 3; KEGG: pol:Bpro_4811 amidohydrolase 3 YP_981573.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pol:Bpro_4812 antibiotic biosynthesis monooxygenase YP_981574.1 PFAM: isochorismatase hydrolase; KEGG: pol:Bpro_4813 isochorismatase hydrolase YP_981575.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4814 transcriptional regulator, LysR family YP_981576.1 PFAM: protein of unknown function DUF1211; KEGG: cvi:CV0104 hypothetical protein YP_981578.1 PFAM: peptidase M23B; KEGG: bbr:BB1398 putative peptidase YP_981579.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pca:Pcar_2388 dehydrogenases (flavoproteins)-like YP_981580.1 KEGG: pol:Bpro_3354 hypothetical protein YP_981581.1 KEGG: pol:Bpro_5352 DNA polymerase, beta-like region YP_981582.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cold shock domain family protein YP_981583.1 KEGG: retron reverse transcriptase YP_981584.1 KEGG: retron reverse transcriptase YP_981585.1 KEGG: eba:p1B34 hypothetical protein YP_981586.1 KEGG: eba:p1B35 hypothetical protein YP_981587.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_981588.1 KEGG: pol:Bpro_3349 hypothetical protein YP_981589.1 KEGG: hypothetical protein YP_981590.1 PFAM: porin, Gram-negative type; KEGG: bur:Bcep18194_A4837 outer membrane protein, (porin) YP_981591.1 PFAM: protein of unknown function DUF924; KEGG: pol:Bpro_3345 protein of unknown function DUF924 YP_981592.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_981593.1 KEGG: pol:Bpro_3339 hypothetical protein YP_981594.1 PFAM: 20S proteasome, A and B subunits; KEGG: pol:Bpro_3338 20S proteasome, A and B subunits YP_981595.1 This protein performs the mismatch recognition step during the DNA repair process YP_981596.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_3621 protein of unknown function DUF6, transmembrane YP_981597.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_3620 transcriptional regulator, LysR family YP_981598.1 KEGG: eba:ebD75 hypothetical protein YP_981599.1 KEGG: eba:ebD76 hypothetical protein YP_981600.1 KEGG: pol:Bpro_2723 hypothetical protein YP_981601.1 PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: rme:Rmet_3187 protein of unknown function DUF893, YccS/YhfK YP_981602.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_3310 phospholipid/glycerol acyltransferase YP_981603.1 PFAM: glycosyl transferase, family 2; KEGG: pol:Bpro_3309 glycosyl transferase, family 2 YP_981604.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_981605.1 KEGG: pol:Bpro_3306 hypothetical protein YP_981606.1 KEGG: pol:Bpro_3305 hypothetical protein YP_981607.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_981608.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: pol:Bpro_3303 phosphoesterase, PA-phosphatase related YP_981609.1 PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_3302 polysaccharide deacetylase YP_981610.1 KEGG: pol:Bpro_3301 hypothetical protein YP_981611.1 KEGG: pol:Bpro_3300 putative transmembrane protein YP_981612.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_3299 putative lauroyl/myristoyl acyltransferase involved in LPS biosynthesis YP_981613.1 KEGG: rso:RSc0433 probable transmembrane protein YP_981614.1 KEGG: pol:Bpro_3295 acyl carrier protein YP_981615.1 PFAM: inositol monophosphatase; KEGG: pol:Bpro_3293 inositol-1(or 4)-monophosphatase YP_981616.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_3292 RNA methyltransferase TrmH, group 1 YP_981617.1 TIGRFAM: serine O-acetyltransferase; KEGG: pol:Bpro_3291 serine O-acetyltransferase YP_981618.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: pol:Bpro_3289 molybdopterin binding domain YP_981619.1 PFAM: protein of unknown function DUF615; KEGG: pol:Bpro_3288 protein of unknown function DUF615 YP_981620.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pol:Bpro_3287 peptidase U62, modulator of DNA gyrase YP_981621.1 KEGG: pol:Bpro_3286 hypothetical protein YP_981622.1 PFAM: GatB/Yqey domain protein; KEGG: pol:Bpro_3285 GatB/YqeY YP_981623.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_981624.1 KEGG: pol:Bpro_3283 HI0933-like protein YP_981625.1 KEGG: bbr:BB3160 hypothetical protein YP_981626.1 KEGG: bbr:BB3159 hypothetical protein YP_981627.1 KEGG: csa:Csal_2436 cell divisionFtsK/SpoIIIE YP_981628.1 KEGG: xom:XOO_3993 ISXo7 transposase YP_981629.1 PFAM: transposase, IS4 family protein; KEGG: bxe:Bxe_C0019 putative transposase YP_981630.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902 YP_981631.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bxe:Bxe_C0485 putative transposase IS116/IS110/IS902 YP_981633.1 KEGG: vvu:VV20627 hypothetical protein YP_981635.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_3283 HI0933-like protein YP_981636.1 KEGG: pol:Bpro_3282 hypothetical protein YP_981637.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_3281 uroporphyrin-III C-methyltransferase YP_981638.1 PFAM: glycosyl transferase, family 3; KEGG: pol:Bpro_3280 glycosyl transferase, family 3 YP_981639.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3279 molybdopterin oxidoreductase YP_981640.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3278 nitrite reductase (NAD(P)H) large subunit, NirD YP_981641.1 KEGG: pol:Bpro_3277 hypothetical protein YP_981642.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rfr:Rfer_2557 nitrite reductase (NAD(P)H) large subunit, NirB YP_981644.1 PFAM: CBS domain containing protein; KEGG: bxe:Bxe_B1676 signal-transduction protein containing CBS domains YP_981645.1 PFAM: protein kinase; protein phosphatase 2C domain protein; SMART: serine/threonine protein kinase; KEGG: pol:Bpro_3274 protein serine/threonine phosphatases YP_981646.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3273 major facilitator superfamily MFS_1 YP_981647.1 KEGG: pol:Bpro_3269 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase YP_981648.1 TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3268 nitrate transport permease YP_981649.1 KEGG: pol:Bpro_3267 twin-arginine translocation pathway signal YP_981650.1 PFAM: ANTAR domain protein; KEGG: pol:Bpro_3266 response regulator receiver (CheY-like) and ANTAR domain protein YP_981651.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_981652.1 KEGG: pol:Bpro_3263 putative transporter signal peptide protein YP_981653.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_981654.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_981655.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: pol:Bpro_3260 polyribonucleotide nucleotidyltransferase YP_981656.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_3259 alcohol dehydrogenase, zinc-binding YP_981657.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_981658.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pol:Bpro_3257 preprotein translocase, SecG subunit YP_981659.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: pol:Bpro_3256 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_981660.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_981661.1 KEGG: pol:Bpro_3254 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit YP_981662.1 Catalyzes the transfer of electrons from NADH to quinone YP_981663.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: pol:Bpro_3252 NADH-quinone oxidoreductase, E subunit YP_981664.1 KEGG: pol:Bpro_3251 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit YP_981665.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_981666.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: pol:Bpro_3249 respiratory-chain NADH dehydrogenase, subunit 1 YP_981667.1 Catalyzes the transfer of electrons from NADH to quinone YP_981668.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: pol:Bpro_3247 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 YP_981669.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: pol:Bpro_3246 NADH-ubiquinone oxidoreductase, chain 4L YP_981670.1 KEGG: pol:Bpro_3245 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_981671.1 KEGG: pol:Bpro_3244 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_981672.1 Catalyzes the transfer of electrons from NADH to quinone YP_981673.1 KEGG: pol:Bpro_3242 putative transmembrane protein YP_981674.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3241 NUDIX hydrolase YP_981675.1 PFAM: protein of unknown function DUF1178; KEGG: pol:Bpro_3240 protein of unknown function DUF1178 YP_981676.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: pol:Bpro_3239 Glu/Leu/Phe/Val dehydrogenase, C terminal YP_981677.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related YP_981678.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3237 transcriptional regulator, MarR family YP_981679.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3236 RND efflux system, outer membrane lipoprotein, NodT YP_981680.1 PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3235 secretion protein HlyD YP_981681.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3234 drug resistance transporter EmrB/QacA subfamily YP_981682.1 PFAM: luciferase family protein; KEGG: dar:Daro_1097 luciferase-like YP_981683.1 PFAM: regulatory protein, MerR; KEGG: reu:Reut_C6238 regulatory protein, MerR YP_981684.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bur:Bcep18194_C6583 FAD dependent oxidoreductase YP_981685.1 PFAM: protein of unknown function DUF1365; KEGG: cvi:CV3225 hypothetical protein YP_981686.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_0492 cyclopropane-fatty-acyl-phospholipid synthase YP_981687.1 KEGG: hypothetical protein YP_981688.1 KEGG: dar:Daro_0494 major facilitator superfamily MFS_1 YP_981689.1 KEGG: dar:Daro_0495 lipoprotein, putative YP_981690.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dar:Daro_0496 short-chain dehydrogenase/reductase SDR YP_981691.1 KEGG: dar:Daro_0497 hypothetical protein YP_981692.1 PFAM: Lipocalin family protein; KEGG: xcb:XC_1682 outer membrane lipoprotein YP_981693.1 KEGG: pol:Bpro_3228 secreted hydrolase-like YP_981694.1 KEGG: pol:Bpro_1688 hypothetical protein YP_981695.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1689 GCN5-related N-acetyltransferase YP_981696.1 PFAM: ribosomal protein S16; KEGG: pol:Bpro_1690 ribosomal protein S16 YP_981697.1 Essential for efficient processing of 16S rRNA YP_981698.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_981699.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_981700.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_1694 NUDIX hydrolase YP_981701.1 KEGG: pol:Bpro_1695 hypothetical protein YP_981702.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: pol:Bpro_1697 GTPase EngC YP_981703.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: pol:Bpro_1698 transcriptional coactivator/pterin dehydratase YP_981704.1 PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_1699 STE24 endopeptidase YP_981705.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_981706.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_1701 DEAD/DEAH box helicase-like YP_981707.1 TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: pol:Bpro_1718 guanosine monophosphate reductase YP_981708.1 KEGG: pol:Bpro_1719 hypothetical protein YP_981709.1 PFAM: UvrD/REP helicase; KEGG: pol:Bpro_1723 UvrD/REP helicase YP_981710.1 KEGG: pol:Bpro_1726 hypothetical protein YP_981711.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_981712.1 KEGG: pol:Bpro_1728 hypothetical protein YP_981713.1 KEGG: pol:Bpro_1729 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2 YP_981714.1 KEGG: bur:Bcep18194_B0200 integral membrane protein-like YP_981715.1 KEGG: mfa:Mfla_1438 NAD-dependent epimerase/dehydratase YP_981716.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: bur:Bcep18194_B0199 NAD-dependent epimerase/dehydratase YP_981717.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: bur:Bcep18194_B0201 putative thiol-disulphide oxidoreductase DCC YP_981718.1 KEGG: cvi:CV2106 probable transcriptional regulator YP_981719.1 PFAM: zinc/iron permease; KEGG: pol:Bpro_1734 zinc/iron permease YP_981720.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_1736 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_981721.1 PFAM: PfkB domain protein; KEGG: pol:Bpro_1737 PfkB YP_981722.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: epimerase KguE, putative YP_981723.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMa0083 putative ABC transporter ATP-binding protein YP_981724.1 PFAM: extracellular solute-binding protein, family 3; KEGG: sme:SMa0082 putative ABC transporter, periplasmic solute-binding protein YP_981725.1 KEGG: bcn:Bcen_5721 hypothetical protein YP_981726.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0081 putative ABC transporter permease YP_981727.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0079 putative ABC transporter permease YP_981728.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_1738 transcriptional regulator, LacI family YP_981729.1 KEGG: pol:Bpro_1739 hypothetical protein YP_981731.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_1742 3-mercaptopyruvate sulfurtransferase YP_981732.1 KEGG: pol:Bpro_1743 putative transmembrane protein YP_981733.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_1744 Rieske (2Fe-2S) region YP_981734.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: pol:Bpro_1745 exonuclease VII, small subunit YP_981735.1 PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_1746 polyprenyl synthetase YP_981736.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_981737.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_2874 twin-arginine translocation pathway signal YP_981738.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_2872 TRAP dicarboxylate transporter-DctM subunit YP_981739.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rfr:Rfer_2871 tripartite ATP-independent periplasmic transporter, DctQ component YP_981740.1 catalyzes the formation of selenophosphate from selenide and ATP YP_981741.1 PFAM: protein of unknown function DUF323; KEGG: pol:Bpro_1756 protein of unknown function DUF323 YP_981743.1 PFAM: regulatory protein, LysR; KEGG: pol:Bpro_1757 transcriptional regulator of molybdate metabolism, LysR family YP_981744.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1758 binding-protein-dependent transport systems inner membrane component YP_981745.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1759 ABC transporter related YP_981746.1 KEGG: pol:Bpro_1760 hypothetical protein YP_981748.1 PFAM: nuclear export factor GLE1; KEGG: pol:Bpro_1762 nuclear export factor GLE1 YP_981749.1 PFAM: protein of unknown function DUF461; KEGG: pol:Bpro_1764 protein of unknown function DUF461 YP_981750.1 KEGG: pol:Bpro_0042 hemerythrin HHE cation binding region YP_981751.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_981752.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pol:Bpro_1781 5-oxoprolinase (ATP-hydrolyzing) YP_981753.1 KEGG: rme:Rmet_3161 hypothetical protein YP_981754.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: psp:PSPPH_3177 potassium efflux system protein PhaG YP_981755.1 PFAM: multiple resistance and pH regulation protein F; KEGG: eba:ebA554 protein F of Na+/H+ antiporter of putative pH adaptation potassium efflux system YP_981756.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_981757.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_981758.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_981759.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_981760.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_981761.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_981762.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_981763.1 KEGG: pol:Bpro_3120 putative transcriptional regulator YP_981764.1 PFAM: Extensin family protein; KEGG: psb:Psyr_1323 extensin-like, C-terminal YP_981765.1 PFAM: protein of unknown function DUF1696; KEGG: oih:OB3216 hypothetical protein YP_981766.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_0496 cation diffusion facilitator family transporter YP_981767.1 KEGG: rsp:RSP_2021 mono-heme class I cytochrome c YP_981768.1 KEGG: rfr:Rfer_0745 diheme cytochrome c YP_981769.1 PFAM: cytochrome B561; KEGG: bte:BTH_II0067 CybP YP_981770.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0503 two component transcriptional regulator, winged helix family YP_981771.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_0504 periplasmic sensor signal transduction histidine kinase YP_981772.1 PFAM: protein of unknown function DUF125, transmembrane; KEGG: eba:ebA544 hypothetical protein YP_981773.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rfr:Rfer_1334 2-nitropropane dioxygenase, NPD YP_981774.1 PFAM: NADPH-dependent FMN reductase; KEGG: pol:Bpro_2371 NADPH-dependent FMN reductase YP_981775.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pol:Bpro_2372 (acyl-carrier protein) phosphodiesterase YP_981776.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2373 transcriptional regulator, LysR family YP_981777.1 PFAM: protein of unknown function DUF1234; KEGG: pol:Bpro_2375 protein of unknown function DUF1234 YP_981778.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2376 thiosulphate-binding protein YP_981779.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2377 sulfate ABC transporter, permease protein CysT YP_981780.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2378 sulfate ABC transporter, permease protein CysW YP_981781.1 KEGG: pol:Bpro_2379 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_981782.1 PFAM: Disulphide bond formation protein DsbB; KEGG: pol:Bpro_2385 disulphide bond formation protein DsbB YP_981783.1 PFAM: amidohydrolase 2; KEGG: bja:blr2258 putative 2-pyrone-4,6-dicarbaxylate hydrolase YP_981784.1 KEGG: pol:Bpro_4509 hypothetical protein YP_981785.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4508 transcriptional regulator, LysR family YP_981786.1 KEGG: pol:Bpro_4507 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein YP_981787.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_4506 glyoxalase/bleomycin resistance protein/dioxygenase YP_981788.1 PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_4505 MaoC-like dehydratase YP_981789.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4504 L-carnitine dehydratase/bile acid-inducible protein F YP_981790.1 KEGG: pol:Bpro_4503 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein YP_981791.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_4501 tripartite ATP-independent periplasmic transporter, DctQ component YP_981792.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_4500 TRAP dicarboxylate transporter-DctM subunit YP_981793.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4499 TRAP dicarboxylate transporter, DctP subunit YP_981794.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_981795.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_4496 4-hydroxyphenylpyruvate dioxygenase YP_981796.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: pol:Bpro_4495 shikimate 5-dehydrogenase YP_981797.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_981798.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_981799.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: bxe:Bxe_B1439 (2FE-2S) ferredoxin YP_981800.1 TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; KEGG: bxe:Bxe_B1440 Fe-S protein assembly chaperone HscA YP_981801.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: bxe:Bxe_B1441 HesB/YadR/YfhF, iron-sulphur cluster assembly protein IscA YP_981802.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_981803.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: bxe:Bxe_B1443 FeS cluster assembly scaffold IscU YP_981804.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; KEGG: bxe:Bxe_B1444 cysteine desulfurase IscS YP_981805.1 KEGG: bxe:Bxe_B1445 transcriptional regulator, NifA, fis family; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_981806.1 PFAM: GCN5-related N-acetyltransferase; KEGG: eba:ebA5964 GCN5-related N-acetyltransferase YP_981807.1 KEGG: xcb:XC_1052 hypothetical protein YP_981809.1 TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM domain protein; KEGG: bxe:Bxe_B1446 nitrogenase cofactor biosynthesis protein NifB YP_981810.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpa:RPA4629 ferredoxin 2[4Fe-4S], FdxN YP_981811.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bxe:Bxe_B1447 HesB/YadR/YfhF YP_981812.1 KEGG: bxe:Bxe_B1448 hypothetical protein YP_981813.1 PFAM: leucine rich repeat variant; KEGG: bxe:Bxe_B1449 hypothetical protein YP_981814.1 PFAM: NifZ family protein; KEGG: bxe:Bxe_B1450 hypothetical protein YP_981815.1 PFAM: NifZ family protein; KEGG: bxe:Bxe_B1451 hypothetical protein YP_981816.1 KEGG: bxe:Bxe_B1452 hypothetical protein YP_981817.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_B1453 putative cysteine desulfurase YP_981818.1 PFAM: NifT/FixU family protein; KEGG: bxe:Bxe_B1454 nitrogen fixation protein YP_981819.1 KEGG: bxe:Bxe_B1455 hypothetical protein YP_981820.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_B1456 putative DegT/DnrJ/EryC1/StrS aminotransferase YP_981821.1 KEGG: bxe:Bxe_B1457 hypothetical protein YP_981822.1 PFAM: ferredoxin; KEGG: bxe:Bxe_B1458 putative (2Fe-2S) ferredoxin YP_981823.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mca:MCA2837 amine oxidase family, flavin-containing protein YP_981824.1 PFAM: protein of unknown function UPF0061; KEGG: mca:MCA0585 hypothetical protein YP_981825.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_3110 GntR-like YP_981826.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_3109 NAD-dependent epimerase/dehydratase YP_981827.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pol:Bpro_3108 senescence marker protein-30 (SMP-30) YP_981828.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_3107 TRAP dicarboxylate transporter, DctP subunit YP_981829.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_3106 tripartite ATP-independent periplasmic transporter, DctQ component YP_981830.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_3105 TRAP dicarboxylate transporter-DctM subunit YP_981831.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate YP_981832.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3104 galactarate dehydratase YP_981833.1 PFAM: aldehyde dehydrogenase; KEGG: rfr:Rfer_0452 aldehyde dehydrogenase YP_981834.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate YP_981835.1 KEGG: pol:Bpro_3102 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding YP_981836.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3101 uncharacterized protein UPF0065 YP_981837.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_2479 TRAP dicarboxylate transporter, DctP subunit YP_981839.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: pol:Bpro_3097 sigma 70 (RpoD) YP_981840.1 KEGG: pol:Bpro_3096 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein YP_981841.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_3095 ribonuclease BN, putative YP_981842.1 KEGG: pol:Bpro_3094 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_981844.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_2204 short-chain dehydrogenase/reductase SDR YP_981845.1 PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_3092 extracellular solute-binding protein, family 1 YP_981846.1 PFAM: Patatin; KEGG: pol:Bpro_3091 patatin YP_981847.1 TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin YP_981848.1 PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3087 histone deacetylase superfamily YP_981849.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3086 thioesterase superfamily YP_981850.1 PFAM: nitroreductase; KEGG: pol:Bpro_3085 nitroreductase YP_981851.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_3084 inner-membrane translocator YP_981852.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3083 ABC transporter related YP_981853.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3082 ABC transporter related YP_981854.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_3081 peptidylprolyl isomerase YP_981855.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_981856.1 KEGG: pol:Bpro_3079 putative transmembrane protein YP_981857.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_981858.1 PFAM: protein of unknown function DUF195; KEGG: pol:Bpro_3077 protein of unknown function DUF195 YP_981859.1 PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_3075 conserved hypothetical protein 730 YP_981860.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_981861.1 KEGG: pol:Bpro_3073 hypothetical protein YP_981862.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_981863.1 KEGG: pol:Bpro_3070 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_981864.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_3069 protein of unknown function DUF6, transmembrane YP_981865.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3068 transcriptional regulator, LysR family YP_981866.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3067 alpha/beta hydrolase fold YP_981867.1 KEGG: pol:Bpro_3066 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_981868.1 PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_3065 histone-like DNA-binding protein YP_981869.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_3064 PpiC-type peptidyl-prolyl cis-trans isomerase YP_981870.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: rfr:Rfer_2842 2',5' RNA ligase YP_981871.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_981872.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_5572 transposase IS116/IS110/IS902 YP_981873.1 KEGG: rxy:Rxyl_2670 hypothetical protein YP_981875.1 KEGG: rxy:Rxyl_2670 hypothetical protein YP_981877.1 KEGG: nmu:Nmul_A2433 hypothetical protein YP_981878.1 PFAM: glycosyl transferase, group 1; KEGG: nmu:Nmul_A2434 glycosyl transferase, group 1 YP_981879.1 KEGG: pfl:PFL_2976 hypothetical protein YP_981880.1 KEGG: pau:PA14_24510 hypothetical protein YP_981881.1 KEGG: nmu:Nmul_A2441 hypothetical protein YP_981882.1 KEGG: nmu:Nmul_A2432 putative signal peptide protein YP_981883.1 PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1846 transcriptional regulator, IclR family YP_981884.1 PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: pol:Bpro_1847 shikimate 5-dehydrogenase YP_981885.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_1848 extracellular ligand-binding receptor YP_981886.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1849 inner-membrane translocator YP_981887.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1850 inner-membrane translocator YP_981888.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1851 ABC transporter related YP_981889.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1852 ABC transporter related YP_981890.1 KEGG: pol:Bpro_1853 4-hydroxyphenylpyruvate dioxygenase YP_981891.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_1854 xylose isomerase-like TIM barrel YP_981892.1 TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: pol:Bpro_1855 3-carboxy-cis,cis-muconate cycloisomerase YP_981893.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pol:Bpro_4498 oxidoreductase-like YP_981894.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0978 transcriptional regulator, LysR family YP_981895.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0977 major facilitator superfamily MFS_1 YP_981896.1 PFAM: protein of unknown function DUF159; KEGG: rfr:Rfer_4344 protein of unknown function DUF159 YP_981897.1 PFAM: metallophosphoesterase; KEGG: gox:GOX1019 putative exonuclease YP_981898.1 KEGG: tfu:Tfu_0999 hypothetical protein YP_981899.1 KEGG: pol:Bpro_2267 hypothetical protein YP_981900.1 KEGG: dar:Daro_3136 cytochrome c, class I YP_981901.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reu:Reut_A3261 twin-arginine translocation pathway signal YP_981902.1 KEGG: dar:Daro_3132 hypothetical protein YP_981903.1 KEGG: pol:Bpro_2628 hypothetical protein YP_981904.1 KEGG: pol:Bpro_2268 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_981905.1 PFAM: conserved hypothetical protein 103; KEGG: pol:Bpro_2269 conserved hypothetical protein 103 YP_981906.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_981907.1 KEGG: ppr:PBPRA2182 hypothetical protein YP_981908.1 KEGG: pol:Bpro_2271 membrane protein-like YP_981909.1 KEGG: pol:Bpro_2272 putative signal peptide protein YP_981910.1 KEGG: pol:Bpro_2277 hypothetical protein YP_981911.1 PFAM: Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: pol:Bpro_2278 lytic transglycosylase, catalytic YP_981912.1 PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_1462 hydroxyacylglutathione hydrolase YP_981913.1 PFAM: Methyltransferase type 11; KEGG: pol:Bpro_2280 hypothetical protein YP_981914.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_981915.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2282 secretion protein HlyD YP_981916.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2283 acriflavin resistance protein YP_981917.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sde:Sde_0299 hypothetical protein YP_981918.1 KEGG: mlo:mll5117 hypothetical protein YP_981919.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nha:Nham_2659 sigma-24 (FecI-like) YP_981920.1 KEGG: cya:CYA_0242 hypothetical protein YP_981921.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: pol:Bpro_2286 MoeA-like, domain I and II YP_981922.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_981923.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_981924.1 KEGG: pol:Bpro_1617 extracellular ligand-binding receptor YP_981925.1 PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2290 aldehyde dehydrogenase (NAD+) YP_981926.1 KEGG: pol:Bpro_3272 hypothetical protein YP_981927.1 PFAM: response regulator receiver; KEGG: pol:Bpro_3271 response regulator receiver domain protein (CheY-like) YP_981928.1 PFAM: ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; KEGG: pol:Bpro_3270 CheA signal transduction histidine kinases YP_981929.1 PFAM: thioesterase superfamily protein; KEGG: eba:ebA6092 conserved hypothetical protein, putative thioesterase YP_981930.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0434 uncharacterized protein UPF0065 YP_981931.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_2296 dimethylmenaquinone methyltransferase YP_981932.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_981933.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5481 HNH endonuclease YP_981934.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bja:blr0382 transcriptional regulatory protein YP_981935.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_981936.1 PFAM: Inorganic pyrophosphatase; KEGG: pol:Bpro_2300 inorganic diphosphatase YP_981937.1 KEGG: reu:Reut_B4915 protein-glutamate methylesterase, two-component system, chemotaxis family, response regulator CheB / chemotaxis protein methyltransferase CheR; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_981939.1 KEGG: pol:Bpro_2302 hypothetical protein YP_981940.1 KEGG: pol:Bpro_2305 hypothetical protein YP_981941.1 KEGG: pol:Bpro_2307 hypothetical protein YP_981942.1 PFAM: protein of unknown function DUF482; KEGG: pol:Bpro_2308 protein of unknown function DUF482 YP_981943.1 KEGG: pol:Bpro_2309 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase YP_981944.1 PFAM: nitrogen regulatory protein P-II; KEGG: pol:Bpro_2310 nitrogen regulatory protein P-II (GlnB, GlnK) YP_981945.1 PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_2311 conserved hypothetical protein 730 YP_981946.1 PFAM: diacylglycerol kinase; KEGG: pol:Bpro_2312 diacylglycerol kinase YP_981947.1 PFAM: RDD domain containing protein; KEGG: pol:Bpro_2313 hypothetical protein YP_981948.1 KEGG: pol:Bpro_2314 putative transmembrane protein YP_981949.1 KEGG: pol:Bpro_2315 putative transmembrane protein YP_981950.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_981951.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_981952.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_981953.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_981954.1 KEGG: pol:Bpro_2320 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_981955.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_981956.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: pol:Bpro_2323 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 YP_981957.1 PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2324 transcriptional regulator, IclR family YP_981958.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_981959.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_981960.1 TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_1963 uracil phosphoribosyltransferase YP_981961.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; SMART: AAA ATPase; KEGG: pol:Bpro_1966 protein of unknown function DUF853, NPT hydrolase putative YP_981962.1 PFAM: protein of unknown function DUF28; KEGG: pol:Bpro_1967 protein of unknown function DUF28 YP_981963.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_981964.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_981965.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pol:Bpro_1972 iojap-related protein YP_981966.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_981967.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_981968.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pol:Bpro_1975 ribonuclease, Rne/Rng family YP_981969.1 PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1976 polysaccharide deacetylase YP_981970.1 PFAM: glycosyl transferase, group 1; KEGG: pol:Bpro_1977 glycosyl transferase, group 1 YP_981971.1 KEGG: sgl:SG2354 hypothetical protein YP_981972.1 KEGG: xom:XOO_3993 ISXo7 transposase YP_981973.1 KEGG: ppr:PBPRB1712 hypothetical transposase YP_981974.1 KEGG: eba:p2A365 transposase, fragment YP_981975.1 KEGG: bja:blr1916 putative transposase YP_981976.1 KEGG: mac:MA0437 transposase YP_981977.1 PFAM: Insertion element protein; KEGG: neu:NE1698 hypothetical protein YP_981978.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bxe:Bxe_C0485 putative transposase IS116/IS110/IS902 YP_981979.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902 YP_981980.1 PFAM: transposase, IS4 family protein; KEGG: bxe:Bxe_C0019 putative transposase YP_981981.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region YP_981982.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase YP_981983.1 KEGG: sgl:SG2354 hypothetical protein YP_981984.1 KEGG: ccr:CC2592 ISCc1, transposase OrfB YP_981985.1 KEGG: lpl:lp_3570 transposase (putative) YP_981986.1 PFAM: Peptidoglycan-binding LysM; KEGG: rme:Rmet_0917 peptidoglycan-binding LysM YP_981987.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2697 D-amino-acid dehydrogenase YP_981988.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_981989.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_981990.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_981991.1 Catalyzes the phosphorylation of UMP to UDP YP_981992.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_981993.1 KEGG: pol:Bpro_2691 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_981994.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pol:Bpro_2690 phosphatidate cytidylyltransferase YP_981995.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_981996.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: pol:Bpro_2688 peptidase M50, putative membrane-associated zinc metallopeptidase YP_981997.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pol:Bpro_2687 surface antigen (D15) YP_981998.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: pol:Bpro_2686 outer membrane chaperone Skp (OmpH) YP_981999.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_982000.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_982001.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_982002.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_982003.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_982004.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_2680 tRNA/rRNA methyltransferase (SpoU) YP_982005.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_982006.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: pol:Bpro_2678 carbamoyl-phosphate synthase, large subunit YP_982007.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_2677 GreA/GreB family elongation factor YP_982008.1 KEGG: pol:Bpro_2676 putative transmembrane protein YP_982009.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_982010.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_2674 two component transcriptional regulator, LuxR family YP_982011.1 KEGG: pol:Bpro_2673 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_982012.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_982013.1 KEGG: pol:Bpro_2671 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_982014.1 PFAM: 20S proteasome, A and B subunits; KEGG: pol:Bpro_2670 20S proteasome, A and B subunits YP_982015.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pol:Bpro_2669 dihydrolipoamide dehydrogenase YP_982016.1 KEGG: bxe:Bxe_B1463 hypothetical protein YP_982017.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rfr:Rfer_2214 dihydrolipoamide dehydrogenase YP_982018.1 PFAM: NLP/P60 protein; KEGG: pol:Bpro_2667 peptidace C40 NLP/P60 YP_982019.1 PFAM: NHL repeat containing protein; glucose sorbosone dehydrogenase; KEGG: pol:Bpro_2666 glucose sorbosone dehydrogenase YP_982020.1 KEGG: pol:Bpro_2659 ABC-type transport system ipermease component YP_982021.1 PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_2658 ABC-type transport system periplasmic component YP_982022.1 KEGG: pol:Bpro_2657 hypothetical protein YP_982023.1 KEGG: pol:Bpro_2656 hypothetical protein YP_982024.1 KEGG: pol:Bpro_2655 hypothetical protein YP_982025.1 KEGG: pol:Bpro_2652 hypothetical protein YP_982026.1 KEGG: pol:Bpro_2651 putative heat shock protein YP_982027.1 TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; glutaredoxin; Redoxin domain protein; KEGG: ava:Ava_4981 glutaredoxin-like region YP_982028.1 KEGG: pol:Bpro_1203 hypothetical protein YP_982029.1 KEGG: pol:Bpro_2648 hypothetical protein YP_982030.1 KEGG: pol:Bpro_3875 hypothetical protein YP_982031.1 PFAM: isochorismatase hydrolase; KEGG: pol:Bpro_2647 isochorismatase hydrolase YP_982032.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_2640 glyoxalase/bleomycin resistance protein/dioxygenase YP_982033.1 KEGG: pol:Bpro_2637 hypothetical protein YP_982034.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3826 ABC transporter related YP_982035.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent YP_982036.1 KEGG: pol:Bpro_5569 ISSod10, transposase OrfB YP_982037.1 KEGG: pol:Bpro_5570 transposase and inactivated derivative YP_982038.1 KEGG: pol:Bpro_1991 hypothetical protein YP_982039.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1992 ABC transporter related YP_982040.1 involved in methylation of ribosomal protein L3 YP_982041.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_982042.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_1995 twitching motility protein YP_982043.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_982044.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate YP_982045.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: pol:Bpro_2594 chromosome segregation protein SMC YP_982046.1 SMART: ZipA, C-terminal FtsZ-binding region; KEGG: pol:Bpro_2593 hypothetical protein YP_982047.1 KEGG: pol:Bpro_2592 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like YP_982048.1 PFAM: protein of unknown function DUF454; KEGG: xac:XAC0632 hypothetical protein YP_982049.1 KEGG: pol:Bpro_2590 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_982050.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_982051.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pol:Bpro_2587 methionine aminopeptidase, type I YP_982052.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_982053.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rco:RC1319 hypothetical protein YP_982054.1 PFAM: PilT protein domain protein; KEGG: gvi:glr2382 plasmid stability protein StbB homolog YP_982055.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1 YP_982056.1 KEGG: ana:alr1858 transposase YP_982057.1 PFAM: Aldose 1-epimerase; KEGG: xom:XOO_0261 transglycolase YP_982058.1 PFAM: OmpW family protein; KEGG: pha:PSHAa2155 protein W (OmpW) YP_982059.1 KEGG: bxe:Bxe_B0552 hypothetical protein YP_982060.1 PFAM: protein of unknown function DUF1624; KEGG: rfr:Rfer_2413 protein of unknown function DUF1624 YP_982061.1 PFAM: ThiJ/PfpI domain protein; Catalase domain protein; KEGG: nmu:Nmul_A1515 catalase YP_982062.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_2585 PpiC-type peptidyl-prolyl cis-trans isomerase YP_982063.1 PFAM: BolA family protein; KEGG: pol:Bpro_2584 BolA-like protein YP_982064.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: noc:Noc_2198 transposase, IS605 OrfB YP_982065.1 PFAM: Intracellular septation protein A; KEGG: pol:Bpro_2583 intracellular septation protein A YP_982066.1 KEGG: pol:Bpro_2582 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B YP_982067.1 PFAM: protein of unknown function UPF0061; KEGG: pol:Bpro_2581 protein of unknown function UPF0061 YP_982068.1 activates fatty acids by binding to coenzyme A YP_982069.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_2577 inner-membrane translocator YP_982070.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_2576 inner-membrane translocator YP_982071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2575 ABC transporter related YP_982072.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2574 ABC transporter related YP_982073.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_2573 3-hydroxyacyl-CoA dehydrogenase, NAD-binding YP_982074.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_982075.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_982076.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2566 phenylacetic acid degradation-related protein YP_982077.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_2565 alcohol dehydrogenase, zinc-binding YP_982078.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_2564 acyl-CoA dehydrogenase-like YP_982079.1 KEGG: pol:Bpro_2563 putative glutathione S-transferase-related protein YP_982080.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2562 GCN5-related N-acetyltransferase YP_982082.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_2543 two component transcriptional regulator, LuxR family YP_982084.1 KEGG: pol:Bpro_2559 hypothetical protein YP_982085.1 PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: serA; D-3-phosphoglycerate dehydrogenase YP_982087.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_982088.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_982089.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_982090.1 PFAM: AFG1-family ATPase; KEGG: pol:Bpro_2621 AFG1-like ATPase YP_982091.1 KEGG: pol:Bpro_2620 hypothetical protein YP_982092.1 SMART: protein phosphatase 2C domain protein; KEGG: pol:Bpro_2619 protein serine/threonine phosphatases YP_982093.1 PFAM: protein of unknown function DUF465; KEGG: pol:Bpro_2618 protein of unknown function DUF465 YP_982094.1 SMART: helicase c2; KEGG: pol:Bpro_2617 helicase C2 YP_982095.1 KEGG: pol:Bpro_2616 putative transmembrane protein YP_982096.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_2615 pseudouridine synthase, RluD YP_982097.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pol:Bpro_2614 putative transcriptional regulator YP_982098.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_2613 pseudouridine synthase, Rsu YP_982099.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_982100.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: pol:Bpro_2611 hypothetical protein YP_982101.1 KEGG: pol:Bpro_2610 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_982102.1 KEGG: pol:Bpro_2609 hypothetical protein YP_982103.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_982104.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_982105.1 KEGG: pol:Bpro_2606 hypothetical protein YP_982106.1 SMART: Pyrrolo-quinoline quinone; KEGG: pol:Bpro_2605 pyrrolo-quinoline quinone YP_982107.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_982108.1 Stimulates the elongation of poly(A) tails YP_982109.1 PFAM: GTP-binding protein, HSR1-related; KEGG: pol:Bpro_2602 GTP-binding protein, HSR1-related YP_982110.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pol:Bpro_2601 HflK protein YP_982111.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pol:Bpro_2600 HflC protein YP_982112.1 KEGG: pol:Bpro_2599 hypothetical protein YP_982113.1 PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: pol:Bpro_2598 tRNA synthetase, class II (G, H, P and S) YP_982114.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_982115.1 PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_2596 phosphoribosyltransferase YP_982116.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: pol:Bpro_2595 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme YP_982117.1 KEGG: rfr:Rfer_2230 hypothetical protein YP_982118.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_982119.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: pol:Bpro_3031 arylesterase YP_982120.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2425 ABC transporter related YP_982121.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: pol:Bpro_3029 RNA methyltransferase TrmH, group 3 YP_982123.1 PFAM: cytochrome c, class I; KEGG: dar:Daro_1022 cytochrome c-552 precursor YP_982124.1 KEGG: pol:Bpro_3006 hypothetical protein YP_982125.1 PFAM: Ku domain protein; KEGG: pol:Bpro_3002 hypothetical protein YP_982126.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pae:PA0355 protease PfpI YP_982127.1 PFAM: CHRD domain containing protein; KEGG: pol:Bpro_3001 chordin YP_982128.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rfr:Rfer_2734 radical SAM YP_982129.1 PFAM: protein of unknown function DUF1294; KEGG: neu:NE0717 cold-shock DNA-binding domain YP_982130.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dar:Daro_2666 filamentation induced by cAMP protein Fic YP_982131.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_2993 L-carnitine dehydratase/bile acid-inducible protein F YP_982132.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_982133.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2991 transcriptional regulator, IclR family YP_982134.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2989 ABC transporter related YP_982135.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2988 ABC transporter related YP_982136.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_2987 inner-membrane translocator YP_982137.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1621 inner-membrane translocator YP_982138.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2984 twin-arginine translocation pathway signal YP_982139.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: pol:Bpro_2982 flavodoxin/nitric oxide synthase YP_982140.1 KEGG: pol:Bpro_5569 ISSod10, transposase OrfB YP_982141.1 KEGG: pol:Bpro_5570 transposase and inactivated derivative YP_982142.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_2961 acyl-CoA dehydrogenase-like YP_982143.1 PFAM: aminoglycoside phosphotransferase; KEGG: pol:Bpro_2960 aminoglycoside phosphotransferase YP_982144.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_2959 transcriptional regulator, Crp/Fnr family YP_982145.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_982146.1 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation YP_982147.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_2956 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_982148.1 KEGG: pol:Bpro_2955 hypothetical protein YP_982149.1 Represses a number of genes involved in the response to DNA damage YP_982150.1 PFAM: Asparaginase/glutaminase; KEGG: pol:Bpro_2953 asparaginase YP_982151.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_982152.1 KEGG: pol:Bpro_2951 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_982153.1 PFAM: protein of unknown function DUF343; KEGG: pol:Bpro_2950 protein of unknown function DUF343 YP_982154.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_982155.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2948 biopolymer transport protein ExbD/TolR YP_982156.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2947 MotA/TolQ/ExbB proton channel YP_982157.1 KEGG: pol:Bpro_2946 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type YP_982158.1 PFAM: manganese and iron superoxide dismutase; KEGG: pol:Bpro_2945 superoxide dismutase YP_982159.1 PFAM: protein of unknown function DUF192; KEGG: pol:Bpro_2944 protein of unknown function DUF192 YP_982160.1 KEGG: pol:Bpro_2943 TolA protein YP_982161.1 Converts isocitrate to alpha ketoglutarate YP_982162.1 KEGG: bxe:Bxe_A3769 putative transposase YP_982163.1 PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_0624 RNA-binding region RNP-1 (RNA recognition motif) YP_982164.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_982165.1 KEGG: pol:Bpro_2940 ATPase AAA-2; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_982166.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_982167.1 PFAM: TrkA-N domain protein; Saccharopine dehydrogenase; KEGG: mlo:mlr4469 hypothetical protein YP_982168.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: mlo:mll4468 transcriptional regulator YP_982169.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2938 glutathione S-transferase-like YP_982170.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_2937 rhodanese-like YP_982171.1 TIGRFAM: esterase, PHB depolymerase family; PFAM: putative esterase; KEGG: bxe:Bxe_B2846 esterase, PHB depolymerase YP_982172.1 KEGG: pol:Bpro_2538 hypothetical protein YP_982173.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: pol:Bpro_2537 RNA binding S1 YP_982174.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2526 iron-containing alcohol dehydrogenase YP_982175.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pol:Bpro_2525 alpha/beta hydrolase fold-3 YP_982176.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: pol:Bpro_2521 glycine cleavage T protein (aminomethyl transferase) YP_982177.1 PFAM: aminodeoxychorismate lyase; KEGG: pol:Bpro_2520 aminodeoxychorismate lyase YP_982178.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_982179.1 KEGG: pol:Bpro_2518 DNA-directed DNA polymerase YP_982180.1 PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ YP_982181.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pol:Bpro_2516 TatD-related deoxyribonuclease YP_982182.1 PFAM: Ankyrin; KEGG: pol:Bpro_2515 ankyrin YP_982183.1 KEGG: rfr:Rfer_4122 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_982184.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rfr:Rfer_4121 hydrogen:quinone oxidoreductase YP_982185.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rfr:Rfer_4120 uptake hydrogenase accessory protein HupU YP_982186.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_3962 helix-turn-helix, fis-type YP_982187.1 PFAM: Enoyl-CoA hydratase/isomerase; formyl transferase domain protein; KEGG: rme:Rmet_1541 formyl transferase-like protein YP_982189.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rme:Rmet_1281 hydrogenase expression/formation protein HypE YP_982190.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rme:Rmet_1282 hydrogenase expression/formation protein HypD YP_982191.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rme:Rmet_1283 hydrogenase assembly chaperone HypC/HupF YP_982192.1 KEGG: rme:Rmet_1284 hydrogenase maturation protein HypF YP_982193.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: rme:Rmet_1285 hydrogenase accessory protein HypB YP_982194.1 PFAM: hydrogenase expression/synthesis, HypA; KEGG: rme:Rmet_1286 hydrogenase nickel insertion protein HypA YP_982195.1 KEGG: rme:Rmet_1287 hypothetical protein YP_982196.1 KEGG: rme:Rmet_1288 HupJ, contains rubredoxin domain YP_982197.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rme:Rmet_1289 rubredoxin-type Fe(Cys)4 protein YP_982198.1 PFAM: HupH hydrogenase expression protein; KEGG: rme:Rmet_1290 HupH hydrogenase expression protein YP_982199.1 PFAM: hydrogenase-1 expression HyaE; KEGG: rme:Rmet_1291 hydrogenase-1 expression HyaE YP_982200.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rme:Rmet_1292 hydrogenase assembly chaperone HypC/HupF YP_982201.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52, hydrogen uptake protein; KEGG: rme:Rmet_1293 hydrogenase expression/formation protein YP_982202.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: rme:Rmet_1295 nickel-dependent hydrogenase b-type cytochrome subunit YP_982203.1 PFAM: HupE/UreJ protein; KEGG: rme:Rmet_1296 HupE/UreJ protein YP_982204.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rme:Rmet_1297 nickel-dependent hydrogenase, large subunit YP_982205.1 KEGG: rme:Rmet_1298 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein YP_982206.1 PFAM: von Willebrand factor, type A; KEGG: tbd:Tbd_2636 rubisco activation protein CbbO YP_982207.1 PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: tbd:Tbd_2637 rubisco activation protein CbbQ YP_982208.1 catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation YP_982209.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1394 transcriptional regulator, LysR family YP_982210.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B2478 HAD-superfamily hydrolase, subfamily IA, variant3 YP_982211.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: bbr:BB4624 ribulose-phosphate 3-epimerase YP_982212.1 PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: rfr:Rfer_1393 inositol phosphatase/fructose-1,6-bisphosphatase YP_982213.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: rfr:Rfer_1392 phosphoribulokinase YP_982214.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: tbd:Tbd_0159 transketolase YP_982215.1 TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rme:Rmet_1514 phosphoglycolate phosphatase YP_982216.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: pol:Bpro_4826 glyceraldehyde-3-phosphate dehydrogenase, type I YP_982217.1 PFAM: phosphoglycerate kinase; KEGG: pol:Bpro_4635 phosphoglycerate kinase YP_982218.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_982219.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_C0670 putative transposase YP_982220.1 KEGG: rfr:Rfer_2260 hypothetical protein YP_982221.1 PFAM: phage integrase family protein; KEGG: rfr:Rfer_2261 phage integrase YP_982222.1 KEGG: pol:Bpro_2457 putative signal peptide protein YP_982223.1 PFAM: ThiJ/PfpI domain protein; Catalase domain protein; KEGG: pol:Bpro_2453 catalase YP_982224.1 PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: pol:Bpro_2451 putative adenylate/guanylate cyclase YP_982225.1 KEGG: pol:Bpro_2449 hypothetical protein YP_982226.1 PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: pol:Bpro_2448 muramoyltetrapeptide carboxypeptidase YP_982227.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pol:Bpro_2447 CMP/dCMP deaminase, zinc-binding YP_982228.1 KEGG: pol:Bpro_2446 hypothetical protein YP_982229.1 KEGG: rso:RS03692 hypothetical protein YP_982230.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_982231.1 KEGG: pol:Bpro_2440 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_982232.1 KEGG: pol:Bpro_2439 hypothetical protein YP_982233.1 PFAM: protein of unknown function UPF0125; KEGG: pol:Bpro_2438 protein of unknown function UPF0125 YP_982234.1 PFAM: cyclase/dehydrase; KEGG: pol:Bpro_2437 cyclase/dehydrase YP_982235.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_982236.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_982237.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_2430 protein of unknown function DUF6, transmembrane YP_982238.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: rfr:Rfer_2137 GTP-binding protein TypA YP_982239.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_982240.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_982241.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_982242.1 KEGG: pol:Bpro_2425 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH, type 1, domain protein; NusA N-terminal domain protein; SMART: KH domain protein YP_982243.1 PFAM: protein of unknown function DUF150; KEGG: pol:Bpro_2424 protein of unknown function DUF150 YP_982244.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2423 ABC transporter related YP_982245.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2422 binding-protein-dependent transport systems inner membrane component YP_982246.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2421 binding-protein-dependent transport systems inner membrane component YP_982247.1 PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_2420 extracellular solute-binding protein, family 5 YP_982248.1 KEGG: pol:Bpro_2419 short-chain dehydrogenase/reductase SDR YP_982249.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_982250.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pol:Bpro_2415 lysine decarboxylase YP_982251.1 PFAM: protein of unknown function DUF107; KEGG: pol:Bpro_2414 protein of unknown function DUF107 YP_982252.1 PFAM: band 7 protein; KEGG: pol:Bpro_2413 band 7 protein YP_982253.1 KEGG: pol:Bpro_2412 hypothetical protein YP_982255.1 PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0302 aldo/keto reductase YP_982256.1 PFAM: oxidoreductase domain protein; KEGG: rfr:Rfer_0329 oxidoreductase-like YP_982257.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_982258.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_982259.1 PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0332 amidohydrolase 2 YP_982260.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065 YP_982261.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase YP_982262.1 PFAM: amidohydrolase 2; KEGG: pol:Bpro_4320 amidohydrolase 2 YP_982263.1 PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453 YP_982264.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0341 transcriptional regulator, LysR family YP_982265.1 KEGG: dar:Daro_1481 hypothetical protein YP_982266.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: dar:Daro_1477 molybdenum-binding protein, N-terminal:molybdenum-pterin binding protein YP_982267.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: dar:Daro_1476 molybdenum ABC transporter, periplasmic binding protein YP_982268.1 KEGG: rpc:RPC_4545 hypothetical protein YP_982269.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: dar:Daro_1475 putative molybdenum utilization protein ModD YP_982270.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1379 molybdenum ABC transporter, permease protein YP_982271.1 KEGG: mca:MCA1380 molybdenum ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase YP_982272.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rfr:Rfer_1441 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_982273.1 PFAM: protein of unknown function DUF255; KEGG: tbd:Tbd_2727 hypothetical protein YP_982274.1 KEGG: rfr:Rfer_3825 hypothetical protein YP_982275.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: mca:MCA0586 Rieske 2Fe-2S family protein YP_982276.1 KEGG: mca:MCA1608 hypothetical protein YP_982277.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pol:Bpro_1988 UBA/ThiF-type NAD/FAD binding fold YP_982278.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1986 tetratricopeptide TPR_2 YP_982279.1 TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1985 OmpA/MotB YP_982280.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_982281.1 PFAM: glycosyl transferase, family 2; KEGG: hhe:HH0773 hypothetical protein YP_982282.1 PFAM: glycosyl transferase, family 2; KEGG: pol:Bpro_1982 glycosyl transferase, family 2 YP_982283.1 PFAM: O-antigen polymerase; KEGG: pol:Bpro_1980 O-antigen polymerase YP_982284.1 KEGG: pol:Bpro_1979 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_982285.1 KEGG: pol:Bpro_2723 hypothetical protein YP_982286.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2726 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_982287.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2727 ABC transporter related YP_982288.1 KEGG: pol:Bpro_2733 hypothetical protein YP_982289.1 PFAM: translation initiation factor SUI1; KEGG: pol:Bpro_2734 translation initiation factor SUI1 YP_982290.1 KEGG: pol:Bpro_1344 hypothetical protein YP_982291.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pol:Bpro_2329 glycosyl transferase, family 51 YP_982292.1 PFAM: protein of unknown function DUF937; KEGG: pcr:Pcryo_2016 hypothetical protein YP_982293.1 KEGG: hypothetical protein YP_982294.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pol:Bpro_2328 major facilitator superfamily MFS_1 YP_982295.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pol:Bpro_2084 peptidoglycan glycosyltransferase YP_982297.1 PFAM: PfkB domain protein; KEGG: bcn:Bcen_6346 PfkB YP_982298.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: bcn:Bcen_6467 altronate dehydratase YP_982299.1 PFAM: Mannitol dehydrogenase, C-terminal domain; KEGG: atc:AGR_C_5101 altronate oxidoreductase YP_982300.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bcn:Bcen_6469 alcohol dehydrogenase GroES-like YP_982301.1 PFAM: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_1029 extracellular solute-binding protein, family 3 YP_982302.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3973 ABC transporter related YP_982303.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1031 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_982304.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1032 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_982305.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: atc:AGR_C_5113 hypothetical protein YP_982306.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2746 aminotransferase, class I and II YP_982307.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5481 HNH endonuclease YP_982308.1 PFAM: NAD-glutamate dehydrogenase; KEGG: rfr:Rfer_1509 NAD-glutamate dehydrogenase YP_982309.1 TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: pol:Bpro_2747 endonuclease III YP_982310.1 PFAM: PfkB domain protein; KEGG: pol:Bpro_2756 PfkB YP_982311.1 KEGG: pol:Bpro_2757 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing enzyme; pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region YP_982312.1 PFAM: CBS domain containing protein; KEGG: pol:Bpro_2758 putative signal-transduction protein with CBS domains YP_982313.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1 YP_982314.1 KEGG: ana:alr1858 transposase YP_982315.1 PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: gsu:GSU0716 hypothetical protein YP_982316.1 KEGG: mma:MM3064 hypothetical protein YP_982317.1 KEGG: mma:MM3065 hypothetical protein YP_982318.1 PFAM: UspA domain protein; KEGG: pol:Bpro_3368 UspA YP_982319.1 KEGG: rfr:Rfer_3317 putative lipase YP_982320.1 KEGG: rfr:Rfer_1542 hypothetical protein YP_982321.1 PFAM: dienelactone hydrolase; KEGG: rfr:Rfer_3313 twin-arginine translocation pathway signal YP_982322.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bpm:BURPS1710b_3194 glycerophosphoryl diester phosphodiesterase family protein YP_982323.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: reu:Reut_B3939 regulatory protein GntR, HTH:aminotransferase, class I and II YP_982324.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I YP_982325.1 KEGG: pol:Bpro_3448 putative cytochrome c YP_982326.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding YP_982328.1 PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_A1414 hypothetical protein YP_982329.1 KEGG: bxe:Bxe_A1413 hypothetical protein YP_982330.1 PFAM: glycosyl transferase, group 1; KEGG: bxe:Bxe_A1412 putative glycosyl transferases group 1 YP_982331.1 PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bxe:Bxe_A1411 putative thiamine-monophosphate kinase YP_982332.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bxe:Bxe_A1410 hypothetical protein YP_982333.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bxe:Bxe_A1409 hypothetical protein YP_982334.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bxe:Bxe_A1408 putative nitrilase YP_982335.1 KEGG: bxe:Bxe_A1407 hypothetical protein YP_982336.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: bxe:Bxe_A1406 transcriptional regulator, GntR family YP_982337.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: bur:Bcep18194_B2976 benzoate membrane transport protein YP_982338.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_B3938 general substrate transporter:major facilitator superfamily MFS_1 YP_982339.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol YP_982340.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: pfl:PFL_3856 ring-hydroxylating dioxygenase, ferredoxin reductase subunit YP_982341.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: cgb:cg2638 benzoate dioxygenase small subunit YP_982342.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: rme:Rmet_4882 Rieske (2Fe-2S) region YP_982344.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2394 transcriptional regulator, LysR family YP_982345.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bxe:Bxe_C0584 hypothetical protein YP_982346.1 PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; KEGG: rme:Rmet_1781 catechol 1,2-dioxygenase YP_982347.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4876 uncharacterized protein UPF0065 YP_982348.1 PFAM: Muconolactone delta-isomerase; KEGG: rme:Rmet_4877 muconolactone delta-isomerase YP_982349.1 KEGG: rme:Rmet_4878 mandelate racemase/muconate lactonizing enzyme; TIGRFAM: muconate and chloromuconate cycloisomerases; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein YP_982350.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2482 transcriptional regulator, LysR family YP_982351.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1857 alpha/beta hydrolase fold YP_982352.1 PFAM: regulatory protein, MarR; KEGG: reu:Reut_B3914 regulatory protein, MarR YP_982353.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rpd:RPD_1541 short-chain dehydrogenase/reductase SDR YP_982354.1 TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_1542 naphthoate synthase YP_982355.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_1543 acyl-CoA dehydrogenase-like YP_982356.1 AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate YP_982357.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4609 uncharacterized protein UPF0065 YP_982358.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA0650 cyclohex-1-ene-1-carboxyl-CoA hydratase YP_982359.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rme:Rmet_5908 acyl-CoA dehydrogenase-like protein YP_982360.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: eba:ebA2993 glutaryl-CoA dehydrogenase YP_982361.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: pol:Bpro_3143 electron transfer flavoprotein beta-subunit YP_982362.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: pol:Bpro_3142 electron transfer flavoprotein, alpha subunit YP_982363.1 TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK1485 acetoacetyl-CoA synthetase YP_982364.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_1539 alcohol dehydrogenase, zinc-binding YP_982365.1 PFAM: Enoyl-CoA hydratase/isomerase; FAD dependent oxidoreductase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: reu:Reut_B3873 enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding YP_982366.1 KEGG: pol:Bpro_1231 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase YP_982367.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0579 uncharacterized protein UPF0065 YP_982368.1 PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase YP_982369.1 PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD YP_982370.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0582 L-carnitine dehydratase/bile acid-inducible protein F YP_982371.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0583 acyl-CoA dehydrogenase-like YP_982372.1 KEGG: pol:Bpro_0584 hypothetical protein YP_982373.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0586 transcriptional regulator, LysR family YP_982374.1 KEGG: pol:Bpro_2759 hypothetical protein YP_982375.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2760 cobyric acid synthase CobQ YP_982376.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2761 aminotransferase, class I and II YP_982377.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: pol:Bpro_2762 cobalamin biosynthesis protein CobD YP_982378.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: pol:Bpro_2763 cob(II)yrinic acid a,c-diamide reductase YP_982379.1 KEGG: pol:Bpro_2764 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_982380.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2765 uroporphyrin-III C-methyltransferase YP_982381.1 KEGG: pol:Bpro_2766 hypothetical protein YP_982382.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2767 precorrin-3B C17-methyltransferase YP_982383.1 KEGG: pol:Bpro_2768 hypothetical protein YP_982385.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pol:Bpro_2769 cobalamin (vitamin B12) biosynthesis CbiG protein YP_982386.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pol:Bpro_2773 cobalamin (vitamin B12) biosynthesis CbiG protein YP_982387.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2774 precorrin-2 C20-methyltransferase YP_982388.1 KEGG: pol:Bpro_2775 precorrin-6y C5,15-methyltransferase, subunit CbiE; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_982389.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_982390.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: pol:Bpro_2777 precorrin-8X methylmutase CbiC/CobH YP_982391.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mca:MCA2299 CbiX protein YP_982392.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2779 precorrin-4 C11-methyltransferase YP_982393.1 PFAM: Auxin Efflux Carrier; KEGG: eba:ebA5059 predicted permease YP_982394.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0336 6-phosphogluconate dehydrogenase, NAD-binding YP_982395.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2411 extracellular ligand-binding receptor YP_982396.1 KEGG: pol:Bpro_2410 hypothetical protein YP_982397.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_982398.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: pol:Bpro_2408 leucyl aminopeptidase YP_982399.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pol:Bpro_2407 permease YjgP/YjgQ YP_982400.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pol:Bpro_2406 permease YjgP/YjgQ YP_982401.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: pol:Bpro_2405 cobalamin (vitamin B12) biosynthesis CbiX protein YP_982402.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2404 transcriptional regulator, LysR family YP_982403.1 catalyzes the transfer of an amino moiety YP_982404.1 KEGG: pol:Bpro_2400 hypothetical protein YP_982405.1 KEGG: pol:Bpro_2399 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like YP_982406.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_982407.1 KEGG: algE; outer membrane protein AlgE YP_982409.1 PFAM: acriflavin resistance protein; KEGG: neu:NE0669 acriflavin resistance protein YP_982410.1 KEGG: neu:NE0670 possible membrane fusion protein MtrC YP_982411.1 KEGG: bxe:Bxe_B1750 hypothetical protein YP_982412.1 PFAM: acriflavin resistance protein; KEGG: neu:NE0669 acriflavin resistance protein YP_982414.1 PFAM: dienelactone hydrolase; KEGG: pol:Bpro_2392 phosphoribosyltransferase YP_982415.1 PFAM: phosphoribosyltransferase; Erythromycin esterase; KEGG: pol:Bpro_2391 erythromycin esterase YP_982416.1 PFAM: HI0933 family protein; KEGG: pol:Bpro_2266 HI0933-like protein YP_982417.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: mag:amb3965 uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit YP_982418.1 PFAM: regulatory protein, MerR; KEGG: sma:SAV6758 MerR-family transcriptional regulator YP_982420.1 PFAM: regulatory protein, ArsR; KEGG: ttj:TTHA0156 hypothetical protein YP_982422.1 PFAM: UvrD/REP helicase; KEGG: pol:Bpro_2265 UvrD/REP helicase YP_982423.1 KEGG: pol:Bpro_2264 RecB family exonuclease-like YP_982424.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_2263 thioredoxin YP_982425.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_982426.1 PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31 YP_982427.1 KEGG: pol:Bpro_2260 hypothetical protein YP_982428.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pol:Bpro_2259 MATE efflux family protein YP_982429.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: pol:Bpro_2258 multi-sensor signal transduction histidine kinase YP_982430.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2257 two component transcriptional regulator, winged helix family YP_982431.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pol:Bpro_2256 phosphate uptake regulator, PhoU YP_982432.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_982433.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_982434.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2253 phosphate ABC transporter, permease protein PstC YP_982435.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2252 periplasmic phosphate binding protein YP_982436.1 PFAM: beta-Ig-H3/fasciclin; KEGG: pol:Bpro_2251 beta-Ig-H3/fasciclin YP_982437.1 KEGG: pol:Bpro_2250 twin-arginine translocation pathway signal YP_982438.1 PFAM: Ppx/GppA phosphatase; KEGG: pol:Bpro_2249 Ppx/GppA phosphatase YP_982439.1 KEGG: pol:Bpro_2248 hypothetical protein YP_982440.1 PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_2247 putative phosphohistidine phosphatase, SixA YP_982441.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_982442.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: pol:Bpro_2817 thiamine pyrophosphate enzyme-like TPP-binding YP_982443.1 KEGG: pol:Bpro_2818 hypothetical protein YP_982444.1 PFAM: MscS Mechanosensitive ion channel; KEGG: bbr:BB1859 hypothetical protein YP_982445.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_2824 major facilitator superfamily MFS_1 YP_982446.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: pol:Bpro_2825 transcriptional regulator, AraC family YP_982447.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4051 probable coniferyl aldehyde dehydrogenase YP_982448.1 PFAM: CreA family protein; KEGG: eba:ebA3483 CreA protein YP_982449.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: rfr:Rfer_0490 heat shock protein DnaJ-like YP_982450.1 KEGG: dar:Daro_2064 bacterial regulatory proteins, MerR family YP_982451.1 TIGRFAM: putative addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rfr:Rfer_3405 transcriptional regulator/antitoxin, MazE YP_982452.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein YP_982453.1 PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related YP_982454.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2201 ATPase AAA-2 YP_982455.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: rfr:Rfer_1917 molybdopterin biosynthesis MoaE YP_982456.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: pol:Bpro_2194 thiamineS YP_982457.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: pol:Bpro_2193 MoeA-like, domain I and II YP_982458.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: pol:Bpro_2192 molybdopterin-guanine dinucleotide biosynthesis protein B YP_982459.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_982460.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_982461.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_982462.1 PFAM: protein of unknown function DUF498; KEGG: pol:Bpro_2188 protein of unknown function DUF498 YP_982463.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_2187 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_982464.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: pol:Bpro_2186 PhoH-like protein YP_982468.1 PFAM: glycoside hydrolase, family 24; KEGG: nmu:Nmul_A1445 glycoside hydrolase, family 24 YP_982470.1 KEGG: mca:MCA2677 hypothetical protein YP_982471.1 KEGG: mca:MCA2676 hypothetical protein YP_982472.1 KEGG: rso:RSc0878 hypothetical protein YP_982473.1 KEGG: mca:MCA2674 hypothetical protein YP_982474.1 KEGG: eba:ebA7239 hypothetical protein YP_982475.1 KEGG: rso:RSc0875 putative transmembrane protein YP_982476.1 KEGG: dps:DP1592 hypothetical protein YP_982477.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sas:SAS0944 hypothetical protein YP_982478.1 KEGG: xfa:XF0518 hypothetical protein YP_982481.1 KEGG: stm:STM1034 putative RecA/RadA recombinase YP_982482.1 PFAM: peptidase S14, ClpP; KEGG: stm:STM0912 ATP-dependent protease YP_982483.1 TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: xfa:XF0510 hypothetical protein YP_982484.1 KEGG: eci:UTI89_C5118 hypothetical protein YP_982486.1 PFAM: phage terminase GpA; KEGG: hch:HCH_02894 bacteriophage tail assembly protein YP_982487.1 KEGG: hch:HCH_02893 phage DNA packaging protein, Nu1 subunit of terminase YP_982488.1 KEGG: xfa:XF0515 hypothetical protein YP_982489.1 KEGG: bbr:BB1683 phage-related hypothetical protein YP_982493.1 KEGG: bxe:Bxe_A3088 hypothetical protein YP_982494.1 KEGG: ecc:c1410 hypothetical protein YP_982496.1 KEGG: rpc:RPC_3570 sec-C metal-binding protein YP_982504.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: bxe:Bxe_A3097 ParB-like partition protein YP_982507.1 KEGG: hypothetical protein YP_982509.1 KEGG: eba:ebA22 hypothetical protein YP_982512.1 PFAM: phage integrase family protein; KEGG: nwi:Nwi_0831 phage integrase YP_982513.1 KEGG: pol:Bpro_2184 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_982514.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pol:Bpro_2183 ferredoxin, 2Fe-2S type YP_982515.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_982516.1 TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: pol:Bpro_2181 co-chaperone Hsc20 YP_982517.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: pol:Bpro_2180 iron-sulfur cluster assembly protein IscA YP_982518.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: pol:Bpro_2179 FeS cluster assembly scaffold IscU YP_982519.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pol:Bpro_2178 cysteine desulfurase IscS YP_982520.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: pol:Bpro_2177 transcriptional regulator, BadM/Rrf2 family YP_982522.1 KEGG: xac:XAC3966 hypothetical protein YP_982524.1 KEGG: tbd:Tbd_0731 hypothetical protein YP_982525.1 PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_3008 DsbA oxidoreductase YP_982526.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pol:Bpro_1210 beta-lactamase-like YP_982527.1 PFAM: UspA domain protein; KEGG: pol:Bpro_1206 UspA YP_982528.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_1201 putative alcohol dehydrogenase-like oxidoreductase protein YP_982529.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_1200 transport-associated YP_982530.1 PFAM: heat shock protein Hsp20; KEGG: pol:Bpro_1199 heat shock protein HSP20 YP_982531.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1942 ABC transporter related YP_982532.1 PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_1941 protein of unknown function DUF214 YP_982533.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rfr:Rfer_1940 secretion protein HlyD YP_982534.1 PFAM: UspA domain protein; KEGG: pol:Bpro_1168 UspA YP_982535.1 PFAM: UspA domain protein; KEGG: pol:Bpro_4298 UspA YP_982536.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_4047 3-oxoacyl-(acyl-carrier-protein) reductase YP_982537.1 PFAM: Chromate transporter; KEGG: pol:Bpro_3026 chromate transporter YP_982538.1 PFAM: Chromate transporter; KEGG: pol:Bpro_3027 chromate transporter YP_982539.1 TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: bxe:Bxe_B1438 putative homocitrate synthase YP_982540.1 TIGRFAM: serine O-acetyltransferase; KEGG: mca:MCA1830 serine acetyltransferase YP_982541.1 associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage YP_982542.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: bxe:Bxe_B1436 electron transfer flavoprotein, fix A (beta subunit) YP_982543.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: bxe:Bxe_B1435 electron transfer flavoprotein FixB (alpha subunit) YP_982544.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: bxe:Bxe_B1434 electron-transferring-flavoprotein dehydrogenase YP_982545.1 KEGG: bxe:Bxe_B1433 putative ferredoxin like protein; FixX YP_982546.1 KEGG: mca:MCA0256 ferredoxin, 2Fe-2S YP_982547.1 KEGG: rpc:RPC_4469 tetratricopeptide TPR_2 YP_982548.1 PFAM: NifQ family protein; KEGG: bxe:Bxe_B1476 putative nitrogen fixation-related protein(NifQ) YP_982549.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bxe:Bxe_B1475 hypothetical protein YP_982550.1 PFAM: protein of unknown function DUF683; KEGG: bxe:Bxe_B1474 hypothetical protein YP_982551.1 PFAM: protein of unknown function DUF269; KEGG: bxe:Bxe_B1473 hypothetical protein YP_982552.1 TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: bxe:Bxe_B1472 nitrogen fixation-related protein (NifX) YP_982553.1 functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe YP_982554.1 functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe YP_982555.1 PFAM: heat shock protein DnaJ domain protein; KEGG: syw:SYNW1328 hypothetical protein YP_982556.1 PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: rfr:Rfer_1169 H+-transporting two-sector ATPase, gamma subunit YP_982557.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_982558.1 PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: rfr:Rfer_1167 H+-transporting two-sector ATPase, B/B' subunit YP_982559.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_982560.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_982561.1 KEGG: rfr:Rfer_1164 hypothetical protein YP_982562.1 TIGRFAM: F0F1-ATPase subunit, putative; KEGG: rfr:Rfer_1163 F0F1-ATPase subunit, putative YP_982563.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_982564.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_982565.1 KEGG: rpa:RPA1927 hypothetical protein YP_982566.1 PFAM: AAA ATPase, central domain protein; KEGG: mca:MCA0262 ATPase, AAA family YP_982567.1 KEGG: bxe:Bxe_B1469 hypothetical protein YP_982568.1 KEGG: mca:MCA0224 hypothetical protein YP_982569.1 KEGG: bxe:Bxe_B1468 hypothetical protein YP_982570.1 PFAM: ferredoxin; KEGG: rpe:RPE_1938 ferredoxin YP_982571.1 KEGG: bxe:Bxe_B1467 nitrogenase, molybdenum-iron protein beta chain(NifK); TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase, component 1 YP_982572.1 KEGG: bxe:Bxe_B1466 nitrogenase, molybdenum-iron protein alpha chain(NifD); TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1 YP_982573.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis YP_982574.1 PFAM: globin; KEGG: bxe:Bxe_B1464 putative globin YP_982575.1 KEGG: bxe:Bxe_B1463 hypothetical protein YP_982576.1 PFAM: Ankyrin; KEGG: bxe:Bxe_B1462 putative ankyrin repeat protein YP_982577.1 KEGG: mca:MCA0222 hypothetical protein YP_982578.1 PFAM: Ankyrin; SMART: Rhodanese domain protein; KEGG: bxe:Bxe_B1461 putative ankyrin repeat protein YP_982579.1 TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: bxe:Bxe_B1460 nitrogenase-associated protein YP_982580.1 TIGRFAM: putative regulatory protein, FmdB family; KEGG: bxe:Bxe_B1459 hypothetical protein YP_982581.1 PFAM: OsmC family protein; KEGG: lpp:lpp1954 hypothetical protein YP_982583.1 KEGG: pol:Bpro_4893 hypothetical protein YP_982584.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_982585.1 PFAM: Redoxin domain protein; KEGG: tbd:Tbd_0272 thioredoxin family protein YP_982586.1 KEGG: cvi:CV3512 probable signal peptide protein YP_982587.1 PFAM: protein of unknown function DUF692; KEGG: cps:CPS_0811 hypothetical protein YP_982588.1 KEGG: cps:CPS_0810 hypothetical protein YP_982589.1 PFAM: DoxX family protein; KEGG: cps:CPS_0809 DoxD family protein YP_982590.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2780 ABC transporter related YP_982591.1 PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein YP_982592.1 PFAM: periplasmic binding protein; KEGG: pol:Bpro_2782 periplasmic binding protein YP_982593.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: pol:Bpro_2783 cobalbumin biosynthesis enzyme YP_982594.1 PFAM: periplasmic binding protein; KEGG: pol:Bpro_2784 periplasmic binding protein YP_982595.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2785 cobyrinic acid a,c-diamide synthase YP_982596.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cvi:CV0494 probable outer membrane receptor protein YP_982597.1 KEGG: pol:Bpro_2787 hypothetical protein YP_982598.1 PFAM: protein of unknown function DUF710; KEGG: pol:Bpro_2788 protein of unknown function DUF710 YP_982599.1 PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_2628 protein of unknown function DUF81 YP_982600.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_982601.1 PFAM: SWIB/MDM2 domain protein; KEGG: pol:Bpro_2811 SWIB complex, BAF60b YP_982602.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: pol:Bpro_2174 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YP_982603.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_2173 polyhydroxyalkanoate depolymerase, intracellular YP_982604.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: pol:Bpro_2170 electron transport complex, RnfABCDGE type, B subunit YP_982605.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mxa:MXAN_2317 sensory box histidine kinase/response regulator YP_982606.1 KEGG: pol:Bpro_2168 lactoylglutathione lyase YP_982607.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_2167 carbamoyl-phosphate synthase L chain, ATP-binding YP_982608.1 PFAM: protein of unknown function DUF218; KEGG: rme:Rmet_4675 protein of unknown function DUF218 YP_982609.1 PFAM: carboxyl transferase; KEGG: pol:Bpro_2164 carboxyl transferase YP_982610.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins YP_982611.1 MDM; functions in conversion of succinate to propionate YP_982612.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2160 transcriptional regulator, GntR family YP_982613.1 PFAM: SpoVR family protein; KEGG: pol:Bpro_2159 SpoVR YP_982614.1 PFAM: protein of unknown function DUF444; KEGG: pol:Bpro_2158 protein of unknown function DUF444 YP_982615.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: pol:Bpro_2157 putative serine protein kinase, PrkA YP_982616.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_2153 TIM-barrel protein, YjbN family YP_982617.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: pol:Bpro_2152 peptidase M14, carboxypeptidase A YP_982618.1 KEGG: pol:Bpro_2151 hypothetical protein YP_982619.1 KEGG: rfr:Rfer_2580 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase YP_982620.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_982621.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_982622.1 KEGG: pol:Bpro_3036 putative primosomal replication protein YP_982623.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_982624.1 PFAM: Na+/solute symporter; KEGG: pol:Bpro_3039 Na+/solute symporter YP_982625.1 KEGG: pol:Bpro_3040 hypothetical protein YP_982626.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_4146 tetratricopeptide TPR_2 YP_982627.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_982628.1 PFAM: protein of unknown function DUF299; KEGG: pol:Bpro_3043 protein of unknown function DUF299 YP_982629.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_3044 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_982630.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin; KEGG: pol:Bpro_3045 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_982631.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: dar:Daro_1473 antibiotic biosynthesis monooxygenase YP_982632.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: mca:MCA1303 glutathione S-transferase YP_982633.1 KEGG: reu:Reut_C6168 hypothetical protein YP_982634.1 KEGG: reu:Reut_C6169 putative poly-gamma-glutamate biosynthesis enzyme YP_982635.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_2361 DEAD/DEAH box helicase-like YP_982636.1 PFAM: pentapeptide repeat protein; KEGG: gvi:gll2892 hypothetical protein YP_982637.1 PFAM: pentapeptide repeat protein; KEGG: tel:tll0709 hypothetical protein YP_982638.1 PFAM: NHL repeat containing protein; KEGG: bur:Bcep18194_C7374 YadA/haemagluttinin like protein YP_982639.1 KEGG: pol:Bpro_2360 hypothetical protein YP_982640.1 PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_2358 DsbA oxidoreductase YP_982642.1 KEGG: pol:Bpro_2356 hypothetical protein YP_982643.1 PFAM: TOBE domain protein; KEGG: rfr:Rfer_1774 molybdenum-pterin binding domain YP_982644.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1775 ABC transporter related YP_982645.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1776 binding-protein-dependent transport systems inner membrane component YP_982646.1 catalyzes the release of sulfite from alkanesulfonates YP_982647.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_1778 ABC transporter, substrate-binding protein, aliphatic sulphonates YP_982648.1 KEGG: reu:Reut_A1977 ABC transporter, substrate-binding protein, aliphatic sulphonates; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NLPA lipoprotein; Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3 YP_982649.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rfr:Rfer_1780 NADPH-dependent FMN reductase YP_982650.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2345 thiosulphate-binding protein YP_982651.1 PFAM: Fe(II) trafficking protein YggX; KEGG: pol:Bpro_2344 Fe(II) trafficking protein YggX YP_982652.1 PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: pol:Bpro_2343 protein of unknown function DUF752 YP_982653.1 KEGG: pol:Bpro_2341 extracellular ligand-binding receptor YP_982654.1 PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_2340 protein of unknown function DUF81 YP_982655.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pol:Bpro_2339 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like YP_982656.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: pol:Bpro_2338 hypothetical protein YP_982657.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pol:Bpro_2337 phosphoadenylyl-sulfate reductase (thioredoxin) YP_982658.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_982659.1 KEGG: pol:Bpro_2335 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding YP_982660.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_2334 4Fe-4S ferredoxin, iron-sulfur binding YP_982661.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_2333 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_982662.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: pol:Bpro_2332 permease for cytosine/purines, uracil, thiamine, allantoin YP_982663.1 KEGG: pol:Bpro_2331 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_982664.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: pol:Bpro_2698 protein of unknown function UPF0031 YP_982665.1 PFAM: protein of unknown function YGGT; KEGG: pol:Bpro_2699 protein of unknown function YGGT YP_982666.1 KEGG: pol:Bpro_2700 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein YP_982667.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_982668.1 PFAM: Recombinase; KEGG: ppu:PP_3026 phage recombinase, putative YP_982670.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_5696 AAA ATPase, central region YP_982671.1 KEGG: pfo:Pfl_5697 hypothetical protein YP_982672.1 KEGG: vpa:VP1081 hypothetical protein YP_982673.1 KEGG: vpa:VP1082 hypothetical protein YP_982674.1 PFAM: UvrD/REP helicase; protein of unknown function DUF955; KEGG: vpa:VP1083 putative ATP-dependent DNA helicase YP_982675.1 KEGG: ana:alr7503 unknown protein YP_982676.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ana:alr7504 unknown protein YP_982677.1 KEGG: hne:HNE_2548 hypothetical protein YP_982678.1 KEGG: rfr:Rfer_2538 hypothetical protein YP_982679.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: eba:ebA1379 maleylpyruvate isomerase YP_982680.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA1377 fumarylpyruvate hydrolase YP_982681.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: eba:ebA1373 gentisate 1,2-dioxygenase YP_982682.1 KEGG: dar:Daro_2767 hemerythrin HHE cation binding region YP_982683.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0990 ABC transporter related YP_982684.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0989 ABC transporter related YP_982685.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_0988 inner-membrane translocator YP_982686.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_0987 inner-membrane translocator YP_982687.1 KEGG: pol:Bpro_0986 extracellular ligand-binding receptor YP_982688.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B4721 Rieske (2Fe-2S) region YP_982689.1 KEGG: pol:Bpro_0984 aromatic-ring-hydroxylating dioxygenase, beta subunit YP_982690.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein YP_982691.1 PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase YP_982692.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: transcriptional regulator, GntR family YP_982693.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B4 IstB transposition helper protein YP_982694.1 PFAM: Integrase, catalytic region; KEGG: mxa:MXAN_3613 transposase, IS21 family YP_982696.1 KEGG: nha:Nham_2790 recombinase YP_982697.1 PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_3061 transposase IS3/IS911 YP_982698.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rfr:Rfer_2266 transposase IS116/IS110/IS902 YP_982699.1 KEGG: hypothetical protein YP_982700.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA5616 probable maleylpyruvate isomerase YP_982701.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: eba:ebA1373 gentisate 1,2-dioxygenase YP_982702.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_C1190 glutathione S-transferase (BphK) YP_982703.1 PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_2632 DsbA oxidoreductase YP_982704.1 PFAM: dihydrodipicolinate synthetase; KEGG: mmc:Mmcs_1629 dihydrodipicolinate synthetase YP_982705.1 PFAM: OmpW family protein; KEGG: bxe:Bxe_C1185 outer membrane protein (porin), OmpW family YP_982706.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmc:Mmcs_1630 glyoxalase/bleomycin resistance protein/dioxygenase YP_982707.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mll7197 dehydrogenase YP_982708.1 Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate YP_982709.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: ssn:SSO_2621 small terminal subunit of phenylpropionate dioxygenase YP_982710.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: sbo:SBO_2562 large terminal subunit of phenylpropionate dioxygenase YP_982711.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B4721 Rieske (2Fe-2S) region YP_982712.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: pol:Bpro_0984 aromatic-ring-hydroxylating dioxygenase, beta subunit YP_982713.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0983 Rieske (2Fe-2S) region YP_982714.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_0980 oxidoreductase FAD-binding region YP_982715.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0979 transcriptional regulator, LysR family YP_982719.1 PFAM: Lytic transglycosylase, catalytic; KEGG: xfa:XFa0002 conjugal transfer protein YP_982722.1 PFAM: type II secretion system protein E; KEGG: dps:DPPB12 probable conjugal transfer protein TrbB YP_982724.1 KEGG: tbd:Tbd_0930 hypothetical protein YP_982725.1 KEGG: eba:ebB17 hypothetical protein YP_982726.1 PFAM: Conjugal transfer protein TrbC; KEGG: ret:RHE_PA00177 conjugal transfer protein C YP_982727.1 PFAM: Conjugal transfer TrbD family protein; KEGG: atc:AGR_pTi_85 probable TrbD gene YP_982728.1 PFAM: CagE, TrbE, VirB component of type IV transporter system; SMART: AAA ATPase; KEGG: nha:Nham_4566 type IV secretion/conjugal transfer ATPase, VirB4 family YP_982729.1 KEGG: nha:Nham_4565 conjugal transfer protein TrbJ YP_982730.1 KEGG: bms:BRA0366 trbL protein YP_982734.1 PFAM: Conjugal transfer protein; KEGG: nha:Nham_4562 conjugal transfer protein YP_982735.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bam:Bamb_6630 conjugal transfer protein TrbG/VirB9/CagX YP_982736.1 PFAM: conjugation TrbI family protein; KEGG: ret:RHE_PA00169 conjugal transfer protein I YP_982737.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rfr:Rfer_1597 cytochrome c biogenesis protein, transmembrane protein YP_982738.1 PFAM: Thioredoxin domain; KEGG: rfr:Rfer_1598 hypothetical protein YP_982739.1 KEGG: pol:Bpro_5539 transposase, IS204/IS1001/IS1096/IS1165 YP_982740.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_5551 transcriptional regulator, TetR family YP_982741.1 KEGG: pol:Bpro_5552 late embryogenesis abundant protein YP_982742.1 KEGG: pol:Bpro_5553 hypothetical protein YP_982743.1 KEGG: pol:Bpro_5554 hypothetical protein YP_982744.1 PFAM: ABC-1 domain protein; KEGG: pol:Bpro_5555 ABC-1 YP_982745.1 PFAM: transposase IS66; KEGG: reu:Reut_C6183 transposase IS66 YP_982746.1 PFAM: IS66 Orf2 family protein; KEGG: reu:Reut_C6378 IS66 Orf2 like YP_982747.1 PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_0340 transposase IS3/IS911 YP_982748.1 required for the use of phosphonates and phosphite as phosphorus sources YP_982749.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: tcx:Tcr_2091 hypothetical protein YP_982753.1 PFAM: domain of unknown function DUF1738; KEGG: reu:Reut_D6521 toprim YP_982754.1 PFAM: TRAG family protein; KEGG: mlo:mlr6395 conjugal transfer protein traG YP_982755.1 KEGG: ppr:PBPRB1620 hypothetical conjugal transfer protein TraF YP_982757.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: gme:Gmet_A3574 relaxase/mobilization nuclease domain YP_982759.1 KEGG: hypothetical protein YP_982760.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: pol:Bpro_2702 polyhydroxyalkanoate synthesis repressor PhaR YP_982761.1 KEGG: pol:Bpro_2703 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein YP_982762.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_2704 alpha/beta hydrolase fold YP_982763.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_982764.1 PFAM: N-formylglutamate amidohydrolase; KEGG: pol:Bpro_2708 N-formylglutamate amidohydrolase YP_982765.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: pol:Bpro_2709 OmpA-like transmembrane region YP_982766.1 PFAM: transmembrane pair domain protein; KEGG: pol:Bpro_2711 transmembrane pair YP_982767.1 PFAM: metallophosphoesterase; KEGG: rfr:Rfer_2358 metallophosphoesterase YP_982768.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: bpa:BPP3398 hypothetical protein YP_982769.1 PFAM: protein of unknown function DUF541; KEGG: pol:Bpro_2712 protein of unknown function DUF541 YP_982770.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_982771.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_2714 periplasmic sensor signal transduction histidine kinase YP_982772.1 KEGG: pol:Bpro_2715 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_982773.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: pol:Bpro_2716 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_982774.1 KEGG: pol:Bpro_2717 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_982775.1 KEGG: pol:Bpro_2718 virulence-associated protein VapB-like YP_982776.1 PFAM: PilT protein domain protein; KEGG: pol:Bpro_2719 PilT protein-like YP_982778.1 KEGG: pol:Bpro_2720 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1 YP_982779.1 KEGG: rfr:Rfer_3211 hypothetical protein YP_982780.1 SMART: HNH nuclease; KEGG: pol:Bpro_2722 HNH nuclease YP_982781.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: pol:Bpro_3046 bacterioferritin YP_982782.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pol:Bpro_3047 TonB-dependent siderophore receptor YP_982783.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pol:Bpro_3048 2OG-Fe(II) oxygenase YP_982784.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3049 FMN-dependent alpha-hydroxy acid dehydrogenase YP_982785.1 KEGG: pae:PA4370 putative iron-regulated protein YP_982786.1 PFAM: protein of unknown function DUF1111; KEGG: pfo:Pfl_4489 protein of unknown function DUF1111 YP_982787.1 KEGG: rsp:RSP_1544 hypothetical signal peptide protein YP_982788.1 PFAM: Uncharacterised conserved protein UCP028101; KEGG: dar:Daro_1057 twin-arginine translocation pathway signal YP_982791.1 KEGG: pol:Bpro_3050 hypothetical protein YP_982792.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pol:Bpro_3051 TonB-like YP_982793.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_3052 MotA/TolQ/ExbB proton channel YP_982794.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_3053 biopolymer transport protein ExbD/TolR YP_982795.1 KEGG: pol:Bpro_3054 hypothetical protein YP_982796.1 PFAM: protein of unknown function DUF336; KEGG: pol:Bpro_3055 protein of unknown function DUF336 YP_982797.1 PFAM: protein of unknown function UPF0005; KEGG: pol:Bpro_3056 protein of unknown function UPF0005 YP_982798.1 KEGG: pol:Bpro_5570 transposase and inactivated derivative YP_982799.1 KEGG: pol:Bpro_5569 ISSod10, transposase OrfB YP_982800.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_982801.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: pol:Bpro_3059 peptidase M23B YP_982802.1 KEGG: pol:Bpro_3060 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_982803.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_982804.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_2783 alcohol dehydrogenase, zinc-binding YP_982805.1 KEGG: pol:Bpro_2243 hypothetical protein YP_982806.1 KEGG: pol:Bpro_2242 hypothetical protein YP_982807.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pfo:Pfl_1954 transcriptional regulator, LysR family YP_982808.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: zmo:ZMO0867 nucleoside-diphosphate-sugar epimerase YP_982809.1 PFAM: NADPH-dependent FMN reductase; KEGG: pol:Bpro_2220 NADPH-dependent FMN reductase YP_982810.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pol:Bpro_2219 arsenate reductase YP_982811.1 SMART: regulatory protein, ArsR; KEGG: pol:Bpro_2218 transcriptional regulator, ArsR family YP_982812.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pol:Bpro_2216 protein tyrosine phosphatase YP_982813.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sde:Sde_3779 arsenical pump membrane protein, putative YP_982814.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2214 GCN5-related N-acetyltransferase YP_982815.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2826 secretion protein HlyD YP_982816.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2827 acriflavin resistance protein YP_982817.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2828 acriflavin resistance protein YP_982818.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2829 RND efflux system, outer membrane lipoprotein, NodT YP_982820.1 KEGG: sde:Sde_0641 hypothetical protein YP_982821.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ade:Adeh_3972 rare lipoprotein A YP_982823.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vch:VCA0890 glyoxylase I family protein YP_982824.1 PFAM: PfkB domain protein; KEGG: pol:Bpro_3202 PfkB YP_982825.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_1903 periplasmic binding protein/LacI transcriptional regulator YP_982826.1 PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type YP_982827.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_1902 inner-membrane translocator YP_982828.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1901 ABC transporter related YP_982829.1 PFAM: RbsD or FucU transport; KEGG: pol:Bpro_3206 RbsD or FucU transport YP_982830.1 PFAM: ROK family protein; KEGG: pol:Bpro_3207 hypothetical protein YP_982831.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_3203 periplasmic binding protein/LacI transcriptional regulator YP_982832.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_982833.1 KEGG: pol:Bpro_2851 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_982834.1 KEGG: pol:Bpro_2852 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase YP_982835.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_2853 ribosomal RNA methyltransferase RrmJ/FtsJ YP_982836.1 PFAM: protein of unknown function UPF0044; KEGG: pol:Bpro_2854 protein of unknown function UPF0044 YP_982837.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: pol:Bpro_2855 oligopeptidase A YP_982838.1 PFAM: glutaredoxin; KEGG: pol:Bpro_2856 glutaredoxin YP_982839.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_982840.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_982844.1 PFAM: 3'-5' exonuclease; KEGG: pol:Bpro_2737 3'-5' exonuclease YP_982845.1 KEGG: pol:Bpro_2033 hypothetical protein YP_982846.1 KEGG: pol:Bpro_2909 putative uncharacterized conserved protein YP_982847.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_0584 transcriptional regulator, AraC family YP_982848.1 TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: rfr:Rfer_0585 amino acid permease-associated protein YP_982849.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: rfr:Rfer_0586 ethanolamine ammonia lyase large subunit YP_982850.1 catalyzes the formation of acetaldehyde from ethanolamine YP_982851.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_982852.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rfr:Rfer_0591 transcriptional regulator, GntR family YP_982853.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: rfr:Rfer_0592 4-aminobutyrate aminotransferase YP_982854.1 KEGG: rfr:Rfer_0593 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_982855.1 PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_0594 extracellular solute-binding protein, family 1 YP_982856.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0595 binding-protein-dependent transport systems inner membrane component YP_982857.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0596 binding-protein-dependent transport systems inner membrane component YP_982858.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rfr:Rfer_0597 agmatinase, putative YP_982859.1 KEGG: pol:Bpro_2917 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase YP_982860.1 PFAM: FMN-binding domain protein; KEGG: sil:SPO1521 regulatory protein, putative YP_982861.1 PFAM: ApbE family lipoprotein; KEGG: det:DET1595 ApbE/NosX family protein YP_982863.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bja:blr5281 two-component response regulator YP_982864.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: bja:blr5280 similar to two-component sensor histidine kinase YP_982865.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: gox:GOX0713 hypothetical protein YP_982866.1 PFAM: phage integrase family protein; KEGG: tbd:Tbd_0943 putative integrase prophage protein YP_982867.1 PFAM: YcfA family protein; KEGG: gox:GOX2706 hypothetical protein YP_982868.1 PFAM: protein of unknown function UPF0150; KEGG: bpa:BPP3142 hypothetical protein YP_982870.1 PFAM: Prophage CP4-57 regulatory; KEGG: cvi:CV3853 hypothetical protein YP_982871.1 KEGG: rso:RSc1868 hypothetical protein YP_982875.1 KEGG: rfr:Rfer_1359 conserved hypothetical membrane spanning protein YP_982876.1 KEGG: rfr:Rfer_1358 hypothetical protein YP_982878.1 KEGG: tbd:Tbd_2679 hypothetical protein YP_982879.1 KEGG: mfa:Mfla_2628 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_982880.1 KEGG: pol:Bpro_1906 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_982881.1 KEGG: pol:Bpro_1905 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_982882.1 KEGG: pol:Bpro_1904 transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein, LuxR; PAS fold domain protein; SMART: PAS domain containing protein YP_982883.1 KEGG: pol:Bpro_1902 ribosomal subunit interface protein, putative YP_982884.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_1901 carboxymuconolactone decarboxylase YP_982885.1 PFAM: Catalase domain protein; KEGG: neu:NE1886 catalase YP_982886.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5382 uncharacterized protein UPF0065 YP_982887.1 PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2844 aldehyde dehydrogenase YP_982888.1 PFAM: protein of unknown function DUF1238; KEGG: mlo:mll5655 hypothetical protein YP_982889.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_982890.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0457 transcriptional regulator, LysR family YP_982891.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; KEGG: pol:Bpro_1899 uncharacterised peroxidase-related YP_982893.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mfa:Mfla_2537 periplasmic sensor signal transduction histidine kinase YP_982894.1 PFAM: response regulator receiver; KEGG: plt:Plut_1025 two component transcriptional regulator, winged helix family YP_982895.1 PFAM: beta-ketoacyl synthase; KEGG: dar:Daro_4170 beta-ketoacyl synthase YP_982896.1 PFAM: phosphopantetheine-binding; KEGG: sil:SPO1931 acyl carrier protein, putative YP_982897.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pmt:PMT0413 NAD binding site YP_982898.1 KEGG: cch:Cag_0252 hypothetical protein YP_982899.1 PFAM: chalcone and stilbene synthases domain protein; Chalcone and stilbene synthases domain protein; FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: sru:SRU_1395 chalcone synthase, putative YP_982900.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_1898 thioesterase superfamily YP_982901.1 KEGG: pol:Bpro_1897 protein of unknown function DUF6, transmembrane YP_982902.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pol:Bpro_1895 electron-transferring-flavoprotein dehydrogenase YP_982903.1 PFAM: sugar transferase; KEGG: pol:Bpro_1875 sugar transferase YP_982904.1 PFAM: regulatory protein, LuxR; KEGG: pol:Bpro_1874 transcriptional regulator, LuxR family YP_982906.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: pol:Bpro_1868 glycine cleavage system T protein YP_982907.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: pol:Bpro_1867 glycine cleavage system H protein YP_982908.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_982909.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_1864 peptidylprolyl isomerase, FKBP-type YP_982910.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1863 alpha/beta hydrolase fold YP_982911.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_4855 periplasmic sensor hybrid histidine kinase YP_982912.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: corR; DNA-binding response regulator CorR YP_982913.1 KEGG: mbo:Mb1015 possible conserved exported protein YP_982914.1 KEGG: cps:CPS_4930 cytochrome c family protein YP_982915.1 PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: reu:Reut_A3083 twin-arginine translocation pathway signal YP_982916.1 KEGG: syn:slr0708 periplasmic protein, function unknown YP_982917.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: bja:blr6160 hypothetical protein YP_982918.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bja:blr6161 putative dehydrogenase YP_982919.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:blr3881 hypothetical protein YP_982920.1 PFAM: protein of unknown function DUF182; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0866 protein of unknown function DUF182 YP_982921.1 KEGG: pol:Bpro_3555 hypothetical protein YP_982922.1 PFAM: NUDIX hydrolase; KEGG: bja:bll5330 hypothetical protein YP_982923.1 PFAM: coenzyme A transferase; KEGG: ecc:c5300 putative acetyl-CoA:acetoacetyl-CoA transferase YP_982924.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bja:blr3304 acyl-CoA dehydrogenase YP_982925.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll3656 hypothetical protein YP_982926.1 PFAM: NIPSNAP family containing protein; KEGG: bja:bll3657 hypothetical protein YP_982927.1 proposed role in polysaccahride synthesis YP_982928.1 PFAM: regulatory proteins, IclR; KEGG: bja:blr3665 transcriptional regulatory protein YP_982929.1 PFAM: Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: bja:blr3858 putative shikimate 5-dehydrogenase YP_982930.1 proposed role in polysaccahride synthesis YP_982931.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: rme:Rmet_4017 transcriptional regulator, AraC family YP_982932.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:blr3672 oxidoreductase YP_982933.1 proposed role in polysaccahride synthesis YP_982934.1 PFAM: NIPSNAP family containing protein; KEGG: rme:Rmet_5493 NIPSNAP domain protein YP_982935.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mlo:mlr5879 short chain dehydrogenase YP_982936.1 PFAM: inner-membrane translocator; KEGG: bpa:BPP2196 putative ABC transport system, membrane protein YP_982937.1 PFAM: inner-membrane translocator; KEGG: rpd:RPD_0052 inner-membrane translocator YP_982938.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr1066 ABC transporter ATP-binding protein YP_982939.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_3678 branched-chain amino acid ABC transporter, ATP-binding protein YP_982940.1 PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_C6330 twin-arginine translocation pathway signal YP_982941.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: sit:TM1040_3469 5-carboxymethyl-2-hydroxymuconate isomerase YP_982942.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: bja:blr3666 nucleoside-diphosphate-sugar epimerase YP_982943.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:blr3672 oxidoreductase YP_982944.1 SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: hch:HCH_00421 predicted protein tyrosine phosphatase YP_982946.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_B1481 GCN5-related N-acetyltransferase YP_982947.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0281 ferredoxin YP_982948.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_0280 Rieske (2Fe-2S) protein YP_982949.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3380 ABC transporter related YP_982950.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3381 ABC transporter related YP_982951.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_3382 inner-membrane translocator YP_982952.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0289 inner-membrane translocator YP_982953.1 PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0288 extracellular ligand-binding receptor YP_982954.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_3386 transcriptional regulator, GntR family YP_982955.1 KEGG: rfr:Rfer_1808 hypothetical protein YP_982956.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_982957.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_982958.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0296 transcriptional regulator, LysR family YP_982959.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_4070 ferredoxin--NADP(+) reductase YP_982960.1 KEGG: rso:RS03699 hypothetical protein YP_982961.1 KEGG: bcn:Bcen_1168 hypothetical protein YP_982962.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_01435 signal transduction histidine kinase YP_982963.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_01436 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_982965.1 PFAM: Class I peptide chain release factor; KEGG: pol:Bpro_1858 class I peptide chain release factor YP_982966.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_4494 HAD-superfamily hydrolase subfamily IA, variant 3 YP_982967.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bpa:BPP2663 short chain dehydrogenase YP_982968.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_982969.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: pcr:Pcryo_0924 transcriptional regulator-like YP_982970.1 PFAM: protein of unknown function UPF0153; KEGG: hpj:jhp0701 hypothetical protein YP_982971.1 KEGG: aci:ACIAD1443 hypothetical protein YP_982973.1 KEGG: aci:ACIAD1444 hypothetical protein YP_982974.1 PFAM: GTP-binding protein, HSR1-related; KEGG: ilo:IL0535 protein containing N-terminal predicted GTPase domain YP_982975.1 KEGG: mca:MCA0729 hypothetical protein YP_982976.1 KEGG: rpe:RPE_2166 hypothetical protein YP_982977.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_1841 cupin 2, conserved barrel YP_982978.1 KEGG: pol:Bpro_1840 glutathione S-transferase-like YP_982979.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_1839 intracellular polyhydroxyalkanoate depolymerase YP_982980.1 PFAM: CBS domain containing protein; KEGG: pol:Bpro_1837 CBS domain YP_982981.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_982982.1 PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_3159 alpha/beta hydrolase YP_982983.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bpa:BPP2885 probable LysR-family transcriptional regulator YP_982984.1 PFAM: protein of unknown function DUF1446; KEGG: bbr:BB3206 hypothetical protein YP_982985.1 KEGG: bbr:BB3205 hypothetical protein YP_982986.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5882 uncharacterized protein UPF0065 YP_982987.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB YP_982988.1 PFAM: Silent information regulator protein Sir2; KEGG: dar:Daro_0006 silent information regulator protein Sir2 YP_982989.1 KEGG: rso:RSc0133 hypothetical protein YP_982990.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: pol:Bpro_1506 FAD linked oxidase-like YP_982991.1 KEGG: pol:Bpro_1834 hypothetical protein YP_982992.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_1830 ribonuclease BN, putative YP_982993.1 KEGG: pol:Bpro_1829 membrane protein-like YP_982994.1 PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_1828 FAD linked oxidase-like YP_982995.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_982996.1 PFAM: dihydrofolate reductase region; KEGG: pol:Bpro_1822 dihydrofolate reductase YP_982997.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO0471 hypothetical dioxygenase YP_982998.1 KEGG: pol:Bpro_1821 putative transmembrane protein YP_982999.1 KEGG: pol:Bpro_1820 exodeoxyribonuclease III (xth); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_983000.1 KEGG: pol:Bpro_1810 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_983001.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1809 signal transduction histidine kinase, nitrogen specific, NtrB YP_983002.1 KEGG: pol:Bpro_1808 conserved hypothetical signal peptide protein YP_983003.1 KEGG: pol:Bpro_1807 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_983004.1 PFAM: molybdopterin binding domain; KEGG: pol:Bpro_1806 molybdopterin binding domain YP_983005.1 KEGG: pol:Bpro_1805 putative transmembrane protein YP_983006.1 KEGG: pol:Bpro_1804 hypothetical protein YP_983007.1 PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1803 polysaccharide deacetylase YP_983008.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1802 hypothetical protein YP_983009.1 PFAM: pseudouridine synthase; KEGG: pol:Bpro_1800 pseudouridine synthase, Rsu YP_983010.1 KEGG: pol:Bpro_1798 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_983011.1 Involved in ubiquinone biosynthesis YP_983012.1 PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1796 OmpA/MotB YP_983013.1 negatively supercoils closed circular double-stranded DNA YP_983014.1 KEGG: pol:Bpro_1794 hypothetical protein YP_983015.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_983016.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pol:Bpro_1792 chorismate mutase YP_983017.1 PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pol:Bpro_1791 prephenate dehydrogenase YP_983018.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation YP_983019.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_983020.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_1788 integration host factor, beta subunit YP_983021.1 KEGG: pol:Bpro_1787 hypothetical protein YP_983022.1 SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1786 tetratricopeptide region YP_983023.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: pol:Bpro_1785 RfaE bifunctional protein, domain I YP_983024.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: pol:Bpro_1784 ADP-L-glycero-D-manno-heptose-6-epimerase YP_983025.1 KEGG: pol:Bpro_1783 hypothetical protein YP_983026.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_983027.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_983028.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pol:Bpro_2139 poly(R)-hydroxyalkanoic acid synthase, class I YP_983029.1 PFAM: protein of unknown function DUF152; KEGG: pol:Bpro_2137 protein of unknown function DUF152 YP_983030.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2136 maleylacetoacetate isomerase YP_983031.1 KEGG: noc:Noc_0134 hypothetical protein YP_983034.1 KEGG: noc:Noc_1486 ABC-type phosphate/phosphonate transport system periplasmic component YP_983035.1 KEGG: noc:Noc_1487 PAS domain protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_983036.1 PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 Roadblock/LC7 YP_983037.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pol:Bpro_2130 antibiotic biosynthesis monooxygenase YP_983038.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2127 uncharacterized protein UPF0065 YP_983039.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_2124 fumarylacetoacetate (FAA) hydrolase YP_983040.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_2117 NUDIX hydrolase YP_983041.1 Required for efficient pilin antigenic variation YP_983042.1 KEGG: pol:Bpro_3013 hypothetical protein YP_983043.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0682 helix-turn-helix, fis-type YP_983044.1 PFAM: beta-lactamase domain protein; KEGG: mfa:Mfla_1733 beta-lactamase-like protein YP_983045.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_1934 4Fe-4S ferredoxin, iron-sulfur binding YP_983046.1 KEGG: rpc:RPC_1203 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like YP_983047.1 PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_B0675 putative metallo-beta-lactamase family protein YP_983048.1 PFAM: cytochrome c, class I; KEGG: bmb:BruAb2_0829 cytochrome c family protein YP_983049.1 PFAM: regulatory protein, ArsR; KEGG: tel:tll0769 transcriptional regulator YP_983050.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bte:BTH_II0059 efflux transporter, RND family, MFP subunit, putative YP_983051.1 PFAM: acriflavin resistance protein; KEGG: bte:BTH_II0058 transporter, AcrB/D/F family YP_983052.1 KEGG: bte:BTH_II0057 hypothetical protein YP_983053.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bte:BTH_II0056 probable porin (omp) abc transporter protein YP_983054.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_3759 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_983055.1 PFAM: Rhodanese domain protein; KEGG: vfi:VFA0125 rhodanese-related sulfurtransferase YP_983056.1 PFAM: OsmC family protein; KEGG: bur:Bcep18194_B1521 hypothetical protein YP_983057.1 PFAM: Rhodanese domain protein; KEGG: noc:Noc_2007 metallo-beta-lactamase family protein YP_983058.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3625 ABC transporter related YP_983059.1 PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3624 protein of unknown function DUF214 YP_983060.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3623 secretion protein HlyD YP_983061.1 KEGG: rfr:Rfer_3622 transcriptional regulator, TetR family YP_983062.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_3644 cation diffusion facilitator family transporter YP_983064.1 KEGG: eba:ebA6677 hypothetical protein YP_983065.1 PFAM: glutaredoxin; KEGG: rfr:Rfer_3642 thiol-disulfide isomerase and thioredoxins YP_983066.1 PFAM: permease; KEGG: rfr:Rfer_3641 permease YP_983067.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_3639 sigma-24 (FecI-like) YP_983068.1 KEGG: mma:MM2981 type I restriction-modification system specificity subunit YP_983069.1 PFAM: regulatory protein, MerR; KEGG: pol:Bpro_2109 transcriptional regulator, MerR family YP_983070.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_983071.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_983072.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_983073.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_983074.1 PFAM: ribosomal protein L35; KEGG: pol:Bpro_2104 ribosomal protein L35 YP_983075.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: pol:Bpro_2103 translation initiation factor IF-3 YP_983076.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_983077.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: pol:Bpro_2101 isocitrate lyase YP_983078.1 KEGG: noc:Noc_1587 transposase YP_983079.1 PFAM: Insertion element protein; KEGG: neu:NE1698 hypothetical protein YP_983080.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0355 binding-protein-dependent transport systems inner membrane component YP_983081.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0354 binding-protein-dependent transport systems inner membrane component YP_983082.1 KEGG: rfr:Rfer_0353 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_983083.1 PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_0352 extracellular solute-binding protein, family 1 YP_983084.1 PFAM: aminotransferase class-III; KEGG: rfr:Rfer_0351 aminotransferase class-III YP_983085.1 PFAM: glutamine synthetase, catalytic region; KEGG: rfr:Rfer_0350 glutamate--ammonia ligase YP_983086.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: cvi:CV2023 probable amidophosphoribosyltransferase YP_983087.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rfr:Rfer_0348 transcriptional regulator, GntR family YP_983088.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY3675 hypothetical protein YP_983089.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_2099 protein of unknown function DUF6, transmembrane YP_983090.1 catalyzes the formation of malonyl-CoA from malonate and CoA YP_983091.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_2093 enoyl-CoA hydratase/isomerase YP_983092.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2092 twin-arginine translocation pathway signal YP_983093.1 PFAM: Malonyl-CoA decarboxylase; KEGG: pol:Bpro_2091 malonyl-CoA decarboxylase YP_983094.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_983095.1 KEGG: bxe:Bxe_B1311 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_983096.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2053 transcriptional regulator, LysR family YP_983097.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_983098.1 KEGG: pol:Bpro_2051 hypothetical protein YP_983099.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_2050 cytochrome c, class I YP_983100.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_2049 acetate--CoA ligase YP_983101.1 PFAM: Uncharacterized protein UPF0114; KEGG: pol:Bpro_2048 uncharacterized protein UPF0114 YP_983102.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_983103.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: pol:Bpro_2046 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region YP_983104.1 KEGG: pol:Bpro_2045 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase YP_983105.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2037 RND efflux system, outer membrane lipoprotein, NodT YP_983106.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2036 hydrophobe/amphiphile efflux-1 HAE1 YP_983107.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2035 secretion protein HlyD YP_983108.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; KEGG: pol:Bpro_2034 transcriptional regulator, TetR family YP_983109.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_983110.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: pol:Bpro_2861 tRNA(Ile)-lysidine synthetase-like YP_983111.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit; KEGG: pol:Bpro_2863 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit YP_983112.1 PFAM: HhH-GPD family protein; KEGG: pol:Bpro_2864 HhH-GPD YP_983113.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_983114.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_2866 tetratricopeptide TPR_2 YP_983115.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pol:Bpro_2867 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_983116.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pol:Bpro_2868 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_983117.1 PFAM: metallophosphoesterase; KEGG: pol:Bpro_2869 metallophosphoesterase YP_983118.1 PFAM: protein of unknown function DUF980; KEGG: pol:Bpro_2870 protein of unknown function DUF980 YP_983119.1 KEGG: eba:p1B295 N6 adenine-specific DNA methyltransferase protein, N12 class YP_983120.1 KEGG: mma:MM3343 transposase YP_983121.1 KEGG: mma:MM3344 transposase YP_983122.1 KEGG: eba:p1B295 N6 adenine-specific DNA methyltransferase protein, N12 class YP_983123.1 KEGG: pol:Bpro_2871 hypothetical protein YP_983124.1 PFAM: protein of unknown function DUF748; KEGG: pol:Bpro_2872 protein of unknown function DUF748 YP_983126.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_2873 lytic transglycosylase, catalytic YP_983127.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_983128.1 PFAM: ATP-cone domain protein; KEGG: pol:Bpro_2875 protein of unknown function DUF193 YP_983129.1 KEGG: pol:Bpro_2877 methylation YP_983130.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV YP_983131.1 KEGG: bps:BPSL2754 putative membrane protein YP_983133.1 KEGG: pae:PA4554 type 4 fimbrial biogenesis protein PilY1 YP_983134.1 KEGG: xcv:XCV2814 type IV pilin PilE YP_983135.1 KEGG: pol:Bpro_2883 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein YP_983136.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_983137.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: pol:Bpro_2885 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_983138.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_983139.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_983140.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2888 aminotransferase, class I and II YP_983141.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2889 4-hydroxybenzoyl-CoA thioesterase YP_983142.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2890 MotA/TolQ/ExbB proton channel YP_983143.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2891 biopolymer transport protein ExbD/TolR YP_983144.1 TIGRFAM: TonB family protein; PFAM: TolA family protein; KEGG: pol:Bpro_2892 TonB-like YP_983145.1 KEGG: pol:Bpro_2893 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_983146.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_2894 rhodanese-like YP_983147.1 PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein YP_983148.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_2897 pirin-like YP_983149.1 KEGG: pol:Bpro_2899 putative flavodoxin YP_983150.1 PFAM: DoxX family protein; KEGG: pol:Bpro_2900 DoxX YP_983151.1 PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_2901 pirin-like YP_983152.1 PFAM: regulatory protein, LysR; helix-turn-helix, Fis-type; LysR, substrate-binding; KEGG: pol:Bpro_2902 transcriptional regulator, LysR family YP_983153.1 KEGG: pol:Bpro_2903 FAD dependent oxidoreductase YP_983154.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: pol:Bpro_2904 glutamate--tRNA ligase YP_983155.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRB0783 hypothetical protein YP_983156.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_983157.1 PFAM: pseudouridine synthase; KEGG: pol:Bpro_2906 pseudouridine synthase YP_983158.1 PFAM: transglutaminase domain protein; KEGG: pol:Bpro_2907 hypothetical protein YP_983159.1 PFAM: Redoxin domain protein; KEGG: pol:Bpro_2908 thiol-disulfide isomerase and thioredoxins-like YP_983160.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_1632 3-hydroxybutyryl-CoA dehydrogenase YP_983161.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase YP_983162.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: pol:Bpro_1630 oxidoreductase FAD/NAD(P)-binding YP_983163.1 KEGG: pol:Bpro_1629 benzoyl-CoA oxygenase component B YP_983164.1 cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA YP_983165.1 consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate YP_983166.1 KEGG: pol:Bpro_1626 hypothetical protein YP_983167.1 PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_1625 aldehyde dehydrogenase YP_983168.1 TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_1624 benzoate-CoA ligase family YP_983169.1 PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0215 alpha/beta hydrolase YP_983170.1 PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0214 extracellular ligand-binding receptor YP_983171.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0213 inner-membrane translocator YP_983172.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0212 inner-membrane translocator YP_983173.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0211 ABC transporter related YP_983174.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0210 ABC transporter related YP_983175.1 KEGG: pol:Bpro_2032 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_983176.1 binds and unfolds substrates as part of the ClpXP protease YP_983177.1 KEGG: pol:Bpro_2030 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP YP_983178.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_983179.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2028 acriflavin resistance protein YP_983180.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2027 secretion protein HlyD YP_983181.1 PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2018 squalene/phytoene synthase YP_983182.1 KEGG: neu:NE2521 hypothetical protein YP_983183.1 KEGG: neu:NE2520 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_983184.1 PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2017 squalene/phytoene synthase YP_983185.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: pol:Bpro_2016 amine oxidase YP_983186.1 PFAM: MltA-interacting MipA family protein; KEGG: rso:RSc2284 putative transmembrane protein YP_983187.1 PFAM: acriflavin resistance protein; KEGG: rso:RS03086 probable transporter transmembrane protein YP_983188.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS03087 putative cation-efflux system signal peptide protein YP_983189.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS05806 putative outer membrane lipoprotein YP_983190.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS03088 probable two-component response regulator transcription regulator protein YP_983191.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rso:RS03089 probable two-component transmembrane sensor kinase transcription regulator protein YP_983192.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_2014 HAD-superfamily hydrolase subfamily IA, variant 3 YP_983193.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_983194.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tpa:TP0407 phosphoglycolate phosphatase (gph-1) YP_983195.1 KEGG: nmu:Nmul_A2145 hypothetical protein YP_983196.1 PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_3543 MaoC-like dehydratase YP_983197.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3544 major facilitator superfamily MFS_1 YP_983198.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3545 transcriptional regulator, MarR family YP_983199.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3546 phenylacetic acid degradation-related protein YP_983200.1 KEGG: rfr:Rfer_0082 hypothetical protein YP_983201.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: pol:Bpro_2822 peptidoglycan-binding domain 1 YP_983202.1 PFAM: protein of unknown function DUF1504; KEGG: nmu:Nmul_A2290 protein of unknown function DUF1504 YP_983203.1 PFAM: sodium/calcium exchanger membrane region; KEGG: rfr:Rfer_3080 sodium/calcium exchanger membrane protein YP_983204.1 KEGG: pol:Bpro_3549 glyoxalase I; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_983205.1 KEGG: pol:Bpro_3550 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase YP_983206.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_983207.1 PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_3552 OmpA/MotB YP_983208.1 PFAM: ChaC family protein; KEGG: pol:Bpro_3553 ChaC-like protein YP_983209.1 KEGG: pol:Bpro_3559 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_983210.1 KEGG: pol:Bpro_3560 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_983211.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: pol:Bpro_3561 poly(A) polymerase YP_983212.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_3562 HAD-superfamily subfamily IB, PSPase-like YP_983213.1 PFAM: Chromosomal replication initiator, DnaA; KEGG: pol:Bpro_3564 chromosomal replication initiator, DnaA YP_983214.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_983216.1 KEGG: mma:MM3343 transposase YP_983217.1 KEGG: mma:MM3344 transposase YP_983218.1 PFAM: protein of unknown function DUF891; KEGG: xfa:XFa0034 hypothetical protein YP_983219.1 PFAM: helix-turn-helix domain protein; KEGG: nmu:Nmul_D2814 transcriptional regulator, XRE family YP_983220.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3567 major facilitator superfamily MFS_1 YP_983221.1 PFAM: isochorismatase hydrolase; KEGG: rfr:Rfer_2520 isochorismatase hydrolase YP_983222.1 PFAM: ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_2523 transcriptional regulator, AraC family YP_983223.1 KEGG: pol:Bpro_3568 hypothetical protein YP_983224.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: pol:Bpro_3569 integral membrane protein MviN YP_983225.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: reu:Reut_B4866 TonB-dependent receptor YP_983226.1 PFAM: Ankyrin; KEGG: reu:Reut_B5420 ankyrin YP_983227.1 PFAM: Pyrrolo-quinoline quinone; KEGG: reu:Reut_B5419 pyrrolo-quinoline quinone YP_983228.1 PFAM: cytochrome c, class I; KEGG: reu:Reut_B5418 cytochrome c, class I YP_983229.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_983230.1 KEGG: pol:Bpro_3571 hypothetical protein YP_983231.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_983232.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_983233.1 PFAM: aldehyde dehydrogenase; KEGG: eba:ebA2242 aldehyde dehydrogenase YP_983234.1 KEGG: dar:Daro_0143 hypothetical protein YP_983235.1 KEGG: dar:Daro_0142 hypothetical protein YP_983236.1 KEGG: gka:GK3199 hypothetical protein YP_983237.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_3587 short-chain dehydrogenase/reductase SDR YP_983238.1 PFAM: cyclase family protein; KEGG: bbr:BB3259 hypothetical protein YP_983239.1 TIGRFAM: kynureninase; PFAM: aminotransferase, class V; KEGG: pol:Bpro_3589 kynureninase YP_983240.1 PFAM: tryptophan 2,3-dioxygenase; KEGG: pol:Bpro_3590 tryptophan 2,3-dioxygenase YP_983241.1 PFAM: protein of unknown function DUF1449; KEGG: tbd:Tbd_2219 hypothetical protein YP_983242.1 PFAM: band 7 protein; KEGG: stm:STM3199 hypothetical protein YP_983243.1 PFAM: monooxygenase, FAD-binding; KEGG: pol:Bpro_3591 salicylate 1-monooxygenase YP_983244.1 Catalyzes the conversion of citrate to isocitrate YP_983245.1 PFAM: peptidase U32; KEGG: cvi:CV1955 probable protease YP_983246.1 KEGG: rpc:RPC_4373 hypothetical protein YP_983247.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_983248.1 KEGG: pol:Bpro_3596 hypothetical protein YP_983249.1 PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase YP_983250.1 catalyzes the oxidation of malate to oxaloacetate YP_983251.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pol:Bpro_3599 transcriptional regulator, GntR family YP_983252.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pol:Bpro_3600 succinate dehydrogenase, cytochrome b subunit YP_983253.1 KEGG: pol:Bpro_3601 succinate dehydrogenase, cytochrome b subunit YP_983254.1 KEGG: pol:Bpro_3602 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_983255.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: pol:Bpro_3603 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_983256.1 PFAM: protein of unknown function DUF339; KEGG: pol:Bpro_3604 protein of unknown function DUF339 YP_983257.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_983258.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3607 transcriptional regulator, LysR family YP_983259.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_983260.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_983261.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_983262.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_983263.1 KEGG: pol:Bpro_3613 putative transmembrane protein YP_983264.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_983265.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: pol:Bpro_3615 phosphoribosylanthranilate isomerase YP_983266.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_983267.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_983268.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: pol:Bpro_3618 acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_983269.1 PFAM: peptidase S16, lon domain protein; KEGG: pol:Bpro_3619 peptidase S16, lon-like YP_983270.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_983271.1 KEGG: hypothetical protein YP_983272.1 PFAM: Patatin; KEGG: pol:Bpro_3621 patatin YP_983273.1 KEGG: bba:Bd3647 predicted membrane protein YP_983275.1 PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_3622 protein of unknown function DUF45 YP_983276.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: pol:Bpro_3630 glycoside hydrolase, family 3-like YP_983277.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_983278.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_983279.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: pol:Bpro_3633 DNA repair protein RecO YP_983280.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; Miro domain protein; KEGG: pol:Bpro_3634 GTP-binding protein Era YP_983281.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_983282.1 KEGG: pol:Bpro_3636 putative transmembrane protein YP_983283.1 KEGG: pol:Bpro_3637 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B YP_983284.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_983285.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pol:Bpro_3640 peptidase S1C, Do YP_983286.1 KEGG: pol:Bpro_3641 putative sigma E regulatory protein, MucB/RseB YP_983287.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: pol:Bpro_3642 anti sigma-E protein, RseA, Burkholderiaceae specific YP_983288.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_983289.1 KEGG: pol:Bpro_3644 hypothetical protein YP_983290.1 PFAM: beta-ketoacyl synthase; KEGG: pol:Bpro_3645 beta-ketoacyl synthase YP_983291.1 carries the fatty acid chain in fatty acid biosynthesis YP_983292.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_3647 3-oxoacyl-(acyl-carrier-protein) reductase YP_983293.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: pol:Bpro_3648 malonyl CoA-acyl carrier protein transacylase YP_983294.1 KEGG: abo:ABO_1914 hypothetical protein YP_983295.1 KEGG: BNR/Asp-box repeat protein YP_983296.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_983297.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_983298.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_983299.1 PFAM: protein of unknown function DUF177; KEGG: pol:Bpro_3653 protein of unknown function DUF177 YP_983300.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pol:Bpro_3654 maf protein YP_983301.1 KEGG: pol:Bpro_3655 putative transmembrane protein YP_983302.1 PFAM: peptidase S49; KEGG: pol:Bpro_3656 peptidase S49 YP_983303.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3657 Rieske (2Fe-2S) region YP_983304.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_3658 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_983305.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_3659 pseudouridine synthase, RluD YP_983306.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pol:Bpro_3660 ribonuclease, Rne/Rng family YP_983307.1 PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein YP_983308.1 PFAM: protein of unknown function DUF513, hemX; KEGG: rfr:Rfer_1717 protein of unknown function DUF513, HemX YP_983309.1 KEGG: rfr:Rfer_1716 uroporphyrinogen III synthase YP_983310.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_983311.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_983312.1 KEGG: pol:Bpro_3666 hypothetical protein YP_983313.1 PFAM: putative carbohydrate binding; glycosyltransferase 36; KEGG: pol:Bpro_3667 cyclic beta 1-2 glucan synthetase YP_983314.1 KEGG: reu:Reut_B4946 hypothetical protein YP_983315.1 PFAM: protein of unknown function UPF0118; KEGG: pol:Bpro_3669 protein of unknown function UPF0118 YP_983316.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: pol:Bpro_3670 transcriptional regulator, LytR/AlgR family YP_983317.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: pol:Bpro_3671 histidine kinase internal region YP_983318.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_983319.1 KEGG: bbr:BB2140 hypothetical protein YP_983320.1 PFAM: protein of unknown function DUF497; KEGG: yps:YPTB1901 hypothetical protein YP_983322.1 TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin YP_983323.1 KEGG: pol:Bpro_2832 hypothetical protein YP_983324.1 SMART: AAA ATPase; KEGG: pol:Bpro_0407 hypothetical protein YP_983325.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_3674 two component transcriptional regulator, winged helix family YP_983326.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_3675 periplasmic sensor signal transduction histidine kinase YP_983327.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pol:Bpro_3676 peptidase S1C, Do YP_983328.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase YP_983330.1 PFAM: alpha-2-macroglobulin domain protein; KEGG: reu:Reut_A3385 alpha-2-macroglobulin, N-terminal YP_983331.1 KEGG: ava:Ava_4845 parallel beta-helix repeat YP_983333.1 KEGG: sgl:SG2354 hypothetical protein YP_983334.1 KEGG: aba:Acid345_4387 hypothetical protein YP_983335.1 PFAM: sugar transferase; KEGG: eba:ebA5903 probable sugar transferase, WBGY YP_983336.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: eba:ebA5901 predicted nucleoside-diphosphate sugar epimerase YP_983337.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sat:SYN_01128 nucleotide-sugar aminotransferase YP_983338.1 PFAM: glycosyl transferase, group 1; KEGG: cvi:CV4119 probable glycosyltransferase YP_983339.1 PFAM: glycosyl transferase, group 1; KEGG: pae:PA3149 probable glycosyltransferase WbpH YP_983340.1 KEGG: pae:PA3154 B-band O-antigen polymerase YP_983341.1 KEGG: pae:PA3150 LPS biosynthesis protein WbpG YP_983342.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_983343.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: mmp:MMP1082 similar to bacterial imidazoleglycerol-phosphate synthase, amidotransferase subunit YP_983344.1 PFAM: polysaccharide biosynthesis protein; KEGG: pae:PA3153 O-antigen translocase YP_983345.1 PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pae:PA3155 probable aminotransferase WbpE YP_983347.1 KEGG: pae:PA3156 probable acetyltransferase WbpD YP_983348.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pae:PA3158 probable oxidoreductase WpbB YP_983349.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: msu:MS1501 WecC protein YP_983350.1 PFAM: glycosyl transferase, family 4; KEGG: eba:ebA6781 putative glycosyl transferase, family 4 YP_983351.1 TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: rso:RSp1018 eps I polysaccharide export transmembrane protein YP_983352.1 PFAM: polysaccharide export protein; KEGG: bcn:Bcen_4169 polysaccharide export protein YP_983353.1 PFAM: transcription antitermination protein NusG; KEGG: cbu:CBU_0826 transcriptional antitermination protein, putative YP_983355.1 KEGG: nha:Nham_3622 OmpA/MotB YP_983356.1 PFAM: Peptidoglycan-binding domain 1 protein; extracellular solute-binding protein, family 1; KEGG: sde:Sde_1367 transcription factor jumonji, JmjC YP_983358.1 PFAM: PspA/IM30 family protein; KEGG: ava:Ava_0161 phage shock protein A, PspA YP_983359.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_5695 ATPase, AAA family YP_983361.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; Penicillin-binding domain protein; KEGG: rme:Rmet_3529 penicillin-binding protein 1C YP_983362.1 PFAM: regulatory protein, MarR; KEGG: bja:bll0108 transcriptional regulatory protein YP_983363.1 catalyzes the formation of catechol from salicylate YP_983364.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: eba:ebA1373 gentisate 1,2-dioxygenase YP_983365.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA1377 fumarylpyruvate hydrolase YP_983366.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: eba:ebA1379 maleylpyruvate isomerase YP_983367.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065 YP_983368.1 KEGG: rme:Rmet_1779 hypothetical protein YP_983370.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcn:Bcen_3232 transposase, IS605 OrfB YP_983371.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: eba:ebA4169 bacterial type II secretion system protein E YP_983372.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: eba:ebA4169 bacterial type II secretion system protein E YP_983373.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3678 L-lactate dehydrogenase (cytochrome) YP_983374.1 KEGG: cps:CPS_2852 hypothetical protein YP_983375.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_3695 cytochrome c, class I YP_983376.1 PFAM: alpha/beta hydrolase fold; KEGG: aci:ACIAD2748 putative peroxidase/hydrolase YP_983378.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: pol:Bpro_3696 DNA-directed DNA polymerase YP_983379.1 KEGG: pol:Bpro_0151 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_983380.1 KEGG: xac:XAC2710 hypothetical protein YP_983381.1 PFAM: globin; KEGG: hne:HNE_2581 protozoan/cyanobacterial globin family protein YP_983382.1 KEGG: psp:PSPPH_3940 hypothetical protein YP_983383.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_983384.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3711 alpha/beta hydrolase fold YP_983385.1 PFAM: protein of unknown function DUF328; KEGG: pol:Bpro_3713 protein of unknown function DUF328 YP_983386.1 KEGG: pol:Bpro_3277 hypothetical protein YP_983387.1 KEGG: pol:Bpro_3277 hypothetical protein YP_983388.1 TIGRFAM: valyl-tRNA synthetase; KEGG: pol:Bpro_3721 valyl-tRNA synthetase YP_983389.1 PFAM: SirA family protein; KEGG: pol:Bpro_3724 SirA-like YP_983390.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3725 NUDIX hydrolase YP_983391.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_983392.1 PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: ecc:c3804 hypothetical protein YdcM YP_983393.1 PFAM: NUDIX hydrolase; KEGG: spt:SPA0759 putative O-antigen biosynthesis protein YP_983394.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: rso:RSc2237 probable UTP--glucose-1-phosphate uridylyltransferase protein YP_983395.1 PFAM: sugar transferase; KEGG: eba:ebA1531 colanic biosynthesis UDP-glucose lipid carrier transferase YP_983397.1 PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_5856 glycosyl transferase, group 1 YP_983398.1 PFAM: acyltransferase 3; KEGG: rsp:RSP_4028 acyltransferase 3 family YP_983399.1 KEGG: eli:ELI_01380 hypothetical protein YP_983400.1 PFAM: glycosyl transferase, family 2; KEGG: bxe:Bxe_C1077 putative glycosyltransferase YP_983401.1 KEGG: bxe:Bxe_C1078 putative acetyltransferase YP_983402.1 PFAM: glycosyl transferase, group 1; KEGG: bxe:Bxe_A3856 putative transferase YP_983403.1 KEGG: sha:SH2127 hypothetical protein YP_983404.1 PFAM: glycosyl transferase, family 2; KEGG: eli:ELI_12215 glycosyl transferase, group 2 family protein YP_983405.1 KEGG: eli:ELI_12240 hypothetical protein YP_983406.1 PFAM: glycosyl transferase, family 2; KEGG: ava:Ava_0268 glycosyl transferase, family 2 YP_983408.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cch:Cag_0665 probable polysaccharide biosynthesis protein YP_983409.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_1237 GDP-mannose 4,6-dehydratase YP_983410.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_1235 NAD-dependent epimerase/dehydratase YP_983411.1 KEGG: pfl:PFL_5483 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein YP_983412.1 KEGG: rfr:Rfer_2675 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_983413.1 TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: rso:RSp1018 eps I polysaccharide export transmembrane protein YP_983414.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ade:Adeh_4276 tyrosine phosphatase YP_983415.1 PFAM: polysaccharide export protein; KEGG: bam:Bamb_6483 polysaccharide export protein YP_983417.1 PFAM: transcription antitermination protein NusG; KEGG: neu:NE0468 putative transcriptional activator YP_983418.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pol:Bpro_1519 protein of unknown function DUF21 YP_983419.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_983420.1 PFAM: ribonuclease BN; KEGG: pol:Bpro_1517 ribonuclease BN YP_983421.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_1516 DEAD/DEAH box helicase-like YP_983422.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: pol:Bpro_3789 NAD-dependent epimerase/dehydratase YP_983423.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose YP_983424.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3793 ABC transporter related YP_983425.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3794 ABC transporter related YP_983426.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_3795 inner-membrane translocator YP_983427.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_3796 inner-membrane translocator YP_983428.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_3797 AAA ATPase, central region YP_983429.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rfr:Rfer_3177 outer membrane lipoprotein carrier protein LolA YP_983430.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: pol:Bpro_3799 cell divisionFtsK/SpoIIIE YP_983431.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pol:Bpro_3800 transcriptional regulator, Crp/Fnr family YP_983432.1 KEGG: pol:Bpro_3801 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_983433.1 required for 70S ribosome assembly YP_983434.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_983435.1 PFAM: fatty acid desaturase; KEGG: pol:Bpro_3804 fatty acid desaturase YP_983436.1 PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun) YP_983437.1 PFAM: protein of unknown function DUF1653; KEGG: pol:Bpro_3807 protein of unknown function DUF1653 YP_983438.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_983439.1 KEGG: pol:Bpro_3822 hypothetical protein YP_983440.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_3830 transcriptional regulator, AsnC family YP_983441.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_983442.1 PFAM: protein of unknown function DUF480; KEGG: pol:Bpro_3844 protein of unknown function DUF480 YP_983443.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3845 acyl-CoA dehydrogenase-like YP_983444.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3846 acyl-CoA dehydrogenase-like YP_983445.1 PFAM: protein of unknown function UPF0187; KEGG: pcr:Pcryo_1229 protein of unknown function UPF0187 YP_983446.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_3847 HNH endonuclease YP_983447.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_983448.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: pol:Bpro_3849 isoleucyl-tRNA synthetase YP_983449.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_983450.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; KEGG: pol:Bpro_3851 Na/Pi cotransporter II-related YP_983451.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_3853 alcohol dehydrogenase, zinc-binding YP_983452.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_1426 protein of unknown function DUF6, transmembrane YP_983454.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3876 short-chain dehydrogenase/reductase SDR YP_983455.1 PFAM: protein of unknown function DUF6, transmembrane; Protein of unknown function DUF250; KEGG: pol:Bpro_3877 protein of unknown function DUF6, transmembrane YP_983456.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane YP_983457.1 PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468 YP_983458.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_3882 type II secretion system protein E YP_983459.1 KEGG: pol:Bpro_3883 hypothetical protein YP_983460.1 KEGG: rfr:Rfer_4383 hypothetical protein YP_983461.1 KEGG: pol:Bpro_3884 hypothetical protein YP_983462.1 PFAM: TatD-related deoxyribonuclease; KEGG: pol:Bpro_3885 TatD-related deoxyribonuclease YP_983463.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: pol:Bpro_3890 peptidase S1 and S6, chymotrypsin/Hap YP_983464.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: pol:Bpro_3891 ATPase associated with various cellular activities, AAA_3 YP_983465.1 PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3892 protein of unknown function DUF58 YP_983466.1 PFAM: von Willebrand factor, type A; KEGG: pol:Bpro_3893 von Willebrand factor, type A YP_983468.1 PFAM: Patatin; KEGG: rfr:Rfer_2026 patatin YP_983469.1 KEGG: pol:Bpro_3894 hypothetical protein YP_983470.1 KEGG: pol:Bpro_3895 hypothetical protein YP_983471.1 KEGG: pol:Bpro_3896 hypothetical protein YP_983472.1 PFAM: heat shock protein DnaJ domain protein; KEGG: pol:Bpro_3897 heat shock protein DnaJ-like YP_983473.1 KEGG: pol:Bpro_4753 mucin-associated surface protein (MASP) YP_983474.1 KEGG: rfr:Rfer_3231 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_983475.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_1014 lipoprotein releasing system, transmembrane protein, LolC/E family YP_983476.1 KEGG: pol:Bpro_1013 hypothetical protein YP_983477.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: pol:Bpro_1012 single-stranded-DNA-specific exonuclease RecJ YP_983478.1 KEGG: eba:ebA3407 predicted TRAP-type uncharacterized transport system protein, periplasmic component YP_983480.1 KEGG: gvi:glr0982 hypothetical protein YP_983481.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: eba:p2A75 hypothetical protein YP_983482.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cfe:CF0624 DNA polymerase III epsilon chain YP_983483.1 KEGG: tde:TDE0593 internalin-related protein YP_983485.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_0022 transcriptional regulator, Crp/Fnr family YP_983486.1 KEGG: rfr:Rfer_0021 hypothetical protein YP_983487.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1011 ABC transporter related YP_983488.1 KEGG: pol:Bpro_1010 twin-arginine translocation pathway signal YP_983489.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1009 binding-protein-dependent transport systems inner membrane component YP_983490.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1008 binding-protein-dependent transport systems inner membrane component YP_983491.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1007 transcriptional regulator, GntR family YP_983492.1 PFAM: Asp/Glu racemase; KEGG: pol:Bpro_1006 Asp/Glu racemase YP_983493.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pol:Bpro_1005 PHP-like YP_983494.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_1004 putative transmembrane protein YP_983495.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_1003 SUA5/YciO/YrdC/YwlC YP_983496.1 PFAM: peptidase M50; KEGG: rfr:Rfer_3239 peptidase M50 YP_983497.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_983498.1 PFAM: CsbD family protein; KEGG: nmu:Nmul_A1602 CsbD-like YP_983499.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_2270 two component transcriptional regulator, winged helix family YP_983500.1 KEGG: rfr:Rfer_2271 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_983501.1 PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA3433 acyl-CoA synthase YP_983502.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pol:Bpro_1895 electron-transferring-flavoprotein dehydrogenase YP_983503.1 PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_C6351 MaoC-like dehydratase YP_983504.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2268 acyl-CoA dehydrogenase-like YP_983505.1 PFAM: protein of unknown function DUF485; KEGG: dar:Daro_4011 protein of unknown function DUF485 YP_983506.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake YP_983507.1 TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: bma:BMA2691 phage portal protein, PBSX family YP_983508.1 PFAM: protein of unknown function DUF264; putative terminase ATPase subunit; KEGG: bps:BPSL0172 phage terminase, ATPase subunit YP_983509.1 PFAM: phage capsid scaffolding; KEGG: xom:XOO_1608 phage-related capsid scaffold protein YP_983510.1 TIGRFAM: phage major capsid protein, P2 family; PFAM: phage major capsid protein, P2; KEGG: rso:RSc1937 probable bacteriophage protein YP_983511.1 PFAM: phage small terminase subunit; KEGG: rso:RSc1936 probable bacteriophage protein YP_983512.1 PFAM: phage head completion; KEGG: bps:BPSL0168 phage head completion/stabilization protein YP_983513.1 PFAM: phage tail X family protein; KEGG: spt:SPA2577 putative phage tail protein YP_983515.1 KEGG: son:SO2973 prophage LambdaSo, lysozyme, putative YP_983516.1 KEGG: pfl:PFL_2019 phage protein, putative YP_983517.1 PFAM: P2 phage tail completion R family protein; KEGG: rso:RSc1929 probable tail completion-like protein YP_983518.1 TIGRFAM: phage virion morphogenesis protein; PFAM: phage virion morphogenesis (putative tail completion) protein; KEGG: bps:BPSL0159 phage tail completion protein YP_983519.1 PFAM: phage baseplate assembly protein V; KEGG: bps:BPSL0156 phage baseplate assembly protein YP_983520.1 PFAM: GPW/gp25 family protein; KEGG: syf:Synpcc7942_0739 hypothetical protein YP_983521.1 PFAM: Baseplate J family protein; KEGG: sit:TM1040_1291 baseplate J-like protein YP_983522.1 TIGRFAM: phage tail protein I; KEGG: sit:TM1040_1290 phage tail protein I YP_983524.1 KEGG: bte:BTH_II1774 serine protease, subtilase family YP_983525.1 PFAM: phage Tail Collar domain protein; KEGG: sit:TM1040_1289 putative variable tail fibre protein YP_983526.1 KEGG: bbr:BB3608 putative tail fiber assembly protein YP_983527.1 PFAM: phage tail sheath protein; KEGG: yps:YPTB1841 putative bacteriophage P2 tail sheath protein YP_983528.1 PFAM: phage major tail tube protein; KEGG: xom:XOO_1589 phage-related tail protein YP_983529.1 KEGG: bxe:Bxe_A3076 hypothetical protein YP_983530.1 PFAM: phage tail E family protein; KEGG: rso:RSc1916 probable phage-related protein YP_983531.1 PFAM: phage P2 GpE family protein; KEGG: csa:Csal_1376 phage P2 GpE YP_983532.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: spt:SPA2558 hypothetical protein YP_983533.1 PFAM: phage P2 GpU family protein; KEGG: xom:XOO_1585 phage-related tail protein YP_983534.1 PFAM: phage late control D family protein; KEGG: xcc:XCC2994 phage-related tail protein YP_983535.1 SMART: helix-turn-helix domain protein; KEGG: yps:YPTB1870 putative prophage transcriptional regulator YP_983537.1 PFAM: phage transcriptional activator, Ogr/delta; KEGG: bps:BPSL0138 hypothetical protein YP_983538.1 KEGG: rso:RSc1898 hypothetical phage-related protein YP_983540.1 KEGG: ecs:ECs2967 putative antirepressor protein YP_983541.1 KEGG: eli:ELI_07220 hypothetical protein YP_983545.1 KEGG: bbr:BB1683 phage-related hypothetical protein YP_983546.1 KEGG: sde:Sde_3589 putative CheA signal transduction histidine kinases YP_983549.1 PFAM: phage Gp37Gp68 family protein; KEGG: bpm:BURPS1710b_1658 GP38 YP_983550.1 KEGG: reu:Reut_B3669 hypothetical protein YP_983551.1 PFAM: Prophage CP4-57 regulatory; KEGG: bte:BTH_II2006 prophage regulatory protein AlpA family protein YP_983552.1 PFAM: phage integrase family protein; KEGG: pol:Bpro_0966 phage integrase YP_983553.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_983554.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_983555.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_983556.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_0950 peptidylprolyl isomerase, FKBP-type YP_983557.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_983558.1 PFAM: Smr protein/MutS2; KEGG: pol:Bpro_0947 Smr protein/MutS2 YP_983559.1 PFAM: regulatory protein, LuxR; KEGG: DNA-binding response regulator, LuxR family YP_983560.1 KEGG: rfr:Rfer_3961 hypothetical protein YP_983561.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_1147 phospholipid/glycerol acyltransferase YP_983562.1 KEGG: pol:Bpro_1146 allantoinase YP_983563.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_983564.1 PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_1144 phosphoribosyltransferase YP_983565.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_983566.1 PFAM: protein of unknown function DUF179; KEGG: pol:Bpro_1142 protein of unknown function DUF179 YP_983567.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: rfr:Rfer_1376 deoxyribodipyrimidine photolyase YP_983568.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: pol:Bpro_1140 CheA signal transduction histidine kinases YP_983569.1 PFAM: chemotaxis sensory transducer; KEGG: pol:Bpro_1139 methyl-accepting chemotaxis sensory transducer YP_983570.1 KEGG: pol:Bpro_1138 CheW-like protein YP_983571.1 PFAM: response regulator receiver; KEGG: pol:Bpro_1137 response regulator receiver domain protein (CheY-like) YP_983572.1 PFAM: response regulator receiver; KEGG: pol:Bpro_1136 response regulator receiver domain protein (CheY-like) YP_983573.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pol:Bpro_1135 rubredoxin-type Fe(Cys)4 protein YP_983574.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: pol:Bpro_1134 putative phosphomethylpyrimidine kinase YP_983575.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_983576.1 involved in de novo purine biosynthesis YP_983577.1 PFAM: helix-turn-helix, Fis-type; KEGG: pol:Bpro_1131 transcriptional regulator, fis family YP_983578.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_1130 dihydrouridine synthase TIM-barrel protein nifR3 YP_983579.1 KEGG: pol:Bpro_1129 hypothetical protein YP_983580.1 PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_1128 RNA-binding S4 YP_983581.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_983582.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bja:blr2848 probable sulphate transport protein YP_983583.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: pol:Bpro_1126 MOSC-like beta barrel YP_983584.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: pol:Bpro_1125 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family YP_983585.1 KEGG: pol:Bpro_1124 putative thiol:disulphide interchange protein (periplasmic) YP_983586.1 PFAM: peptidase M61 domain protein; KEGG: pol:Bpro_1123 peptidase M61 YP_983587.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1122 enoyl-CoA hydratase/isomerase YP_983588.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: pol:Bpro_4730 channel protein, hemolysin III family YP_983589.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: rso:RSc2905 putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase protein YP_983590.1 KEGG: pol:Bpro_1121 hypothetical protein YP_983591.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_983592.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1119 periplasmic sensor signal transduction histidine kinase YP_983593.1 KEGG: pol:Bpro_1118 hypothetical protein YP_983594.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1117 two component, sigma54 specific, transcriptional regulator, fis family YP_983595.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_983596.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_983597.1 KEGG: pol:Bpro_1114 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_983598.1 PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_1113 cytochrome c assembly protein YP_983599.1 KEGG: pol:Bpro_1112 hypothetical protein YP_983600.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1111 periplasmic sensor signal transduction histidine kinase YP_983601.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: pol:Bpro_1110 two component, sigma54 specific, transcriptional regulator, fis family YP_983602.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pol:Bpro_1109 negative regulator of AmpC, AmpD YP_983603.1 Catalyzes the rate-limiting step in dNTP synthesis YP_983604.1 Catalyzes the rate-limiting step in dNTP synthesis YP_983605.1 KEGG: pol:Bpro_1105 histone protein YP_983606.1 PFAM: PfkB domain protein; KEGG: pol:Bpro_1103 PfkB YP_983607.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: pol:Bpro_1102 zinc finger/thioredoxin putative YP_983608.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_983609.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_1100 acetyl-CoA carboxylase, biotin carboxylase YP_983610.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pol:Bpro_1099 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_983611.1 PFAM: Redoxin domain protein; KEGG: pol:Bpro_1098 thioredoxin family protein, putative YP_983612.1 KEGG: pol:Bpro_1097 hypothetical protein YP_983613.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1096 UDP-N-acetylmuramate YP_983614.1 KEGG: psb:Psyr_0912 DnaJ domain protein YP_983615.1 KEGG: pol:Bpro_1095 hypothetical protein YP_983616.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_983617.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pol:Bpro_1093 peptidase U62, modulator of DNA gyrase YP_983618.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pol:Bpro_1091 rod shape-determining protein RodA YP_983619.1 PFAM: protein of unknown function UPF0227; KEGG: pol:Bpro_1090 protein of unknown function UPF0227 YP_983620.1 PFAM: putative transposase, IS891/IS1136/IS1341 family; KEGG: noc:Noc_1587 transposase YP_983621.1 PFAM: transposase, IS4 family protein; KEGG: lpf:lpl2868 hypothetical protein YP_983622.1 PFAM: transposase, IS605 OrfB; KEGG: noc:Noc_1587 transposase YP_983623.1 PFAM: ribonuclease II; KEGG: pol:Bpro_1089 ribonuclease II YP_983624.1 TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like YP_983625.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_983626.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51; KEGG: pol:Bpro_1086 monofunctional biosynthetic peptidoglycan transglycosylase YP_983627.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_983628.1 KEGG: pol:Bpro_1082 hypothetical protein YP_983629.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_983630.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: pol:Bpro_1080 cell division protein FtsZ YP_983631.1 PFAM: cell division protein FtsA; KEGG: pol:Bpro_1079 cell division protein FtsA YP_983632.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: pol:Bpro_1078 cell division protein FtsQ YP_983633.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_983634.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_983635.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_983636.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: pol:Bpro_1074 cell cycle protein YP_983637.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_3427 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_983638.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_983639.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1071 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_983640.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_983641.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_1069 peptidoglycan glycosyltransferase YP_983642.1 PFAM: cell division protein FtsL; KEGG: pol:Bpro_1068 cell division protein, FtsL -like YP_983643.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pol:Bpro_1067 methyltransferase YP_983644.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_983645.1 KEGG: pol:Bpro_1065 hypothetical protein YP_983646.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: pol:Bpro_1064 transcriptional regulators, TraR/DksA family YP_983647.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: pol:Bpro_1063 cobalamin synthesis protein, P47K YP_983649.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: pol:Bpro_2661 transcriptional regulator, GntR family YP_983650.1 SMART: PUA domain containing protein; KEGG: pol:Bpro_1062 putative SAM-dependent methyltransferase YP_983651.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pol:Bpro_1060 phage integrase YP_983652.1 PFAM: protein of unknown function DUF484; KEGG: pol:Bpro_1059 hypothetical protein YP_983653.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_983654.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0844 transcriptional regulator, LysR family YP_983655.1 PFAM: dihydrodipicolinate synthetase; KEGG: mta:Moth_0631 dihydrodipicolinate synthetase YP_983656.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4389 uncharacterized protein UPF0065 YP_983657.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: eca:ECA3767 probable short-chain dehydrogenase YP_983658.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rfr:Rfer_0843 mandelate racemase/muconate lactonizing enzyme YP_983659.1 PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: pol:Bpro_1055 beta-lactamase-like YP_983660.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: pol:Bpro_1050 extracellular solute-binding protein, family 3 YP_983661.1 PFAM: regulatory protein, LysR; KEGG: rfr:Rfer_3458 transcriptional regulator, LysR family YP_983662.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rfr:Rfer_3459 transcriptional regulator, BadM/Rrf2 family YP_983663.1 KEGG: rfr:Rfer_3460 cysteine synthases; TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_983664.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_1049 FAD dependent oxidoreductase YP_983665.1 KEGG: pol:Bpro_1033 hypothetical protein YP_983666.1 putative metalloprotease YP_983667.1 KEGG: pol:Bpro_1031 putative transmembrane protein YP_983668.1 KEGG: pol:Bpro_4967 hypothetical protein YP_983669.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_983670.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rme:Rmet_1148 tripartite ATP-independent periplasmic transporter, DctQ component YP_983671.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbr:BB2309 putative membrane permease YP_983672.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rme:Rmet_1150 TRAP dicarboxylate transporter, DctP subunit YP_983673.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3901 ABC transporter related YP_983674.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3902 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_983675.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3903 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_983676.1 PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_3904 extracellular solute-binding protein, family 3 YP_983677.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3905 transcriptional regulator, LysR family YP_983678.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3906 ABC transporter related YP_983679.1 PFAM: regulatory protein, MerR; KEGG: pfu:PF1985 hypothetical protein YP_983681.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3907 thioesterase superfamily YP_983682.1 PFAM: MgtC/SapB transporter; KEGG: pfo:Pfl_2532 MgtC/SapB transporter YP_983683.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pol:Bpro_3909 hemerythrin HHE cation binding region YP_983684.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: pol:Bpro_3910 NAD-dependent epimerase/dehydratase YP_983685.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_3912 protein of unknown function DUF1099 YP_983686.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: pol:Bpro_3914 metal dependent phosphohydrolase YP_983687.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3919 phenylacetic acid degradation-related protein YP_983688.1 TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin YP_983689.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: tcx:Tcr_0934 phospholipase D/transphosphatidylase YP_983690.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dar:Daro_1762 L-lactate permease YP_983691.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_983692.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_983693.1 KEGG: pol:Bpro_3955 hypothetical protein YP_983694.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_3956 3-hydroxyacyl-CoA dehydrogenase, NAD-binding YP_983695.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3957 acyl-CoA dehydrogenase-like YP_983696.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_3958 transcriptional regulator, TetR family YP_983697.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_983698.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rme:Rmet_2723 polysaccharide biosynthesis protein CapD YP_983699.1 PFAM: sugar transferase; KEGG: rfr:Rfer_1263 sugar transferase YP_983700.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase YP_983701.1 PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_2727 glycosyl transferase, group 1 YP_983702.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: noc:Noc_2167 NAD-dependent epimerase/dehydratase YP_983703.1 PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2174 glycosyl transferase, family 2 YP_983704.1 KEGG: gme:Gmet_2175 hypothetical protein YP_983705.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: dar:Daro_1271 polysaccharide biosynthesis protein YP_983706.1 KEGG: eba:ebA2275 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_983707.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4018 glucose-1-phosphate thymidylyltransferase YP_983708.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase YP_983709.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4022 dTDP-glucose 4,6-dehydratase YP_983710.1 PFAM: lipopolysaccharide biosynthesis; KEGG: rfr:Rfer_1234 lipopolysaccharide biosynthesis YP_983711.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rme:Rmet_3677 histone-like nucleoid-structuring protein H-NS YP_983712.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KR; KEGG: pol:Bpro_4023 male sterility-like YP_983713.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated YP_983714.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4025 transcriptional regulator, TetR family YP_983715.1 KEGG: pol:Bpro_4026 hypothetical protein YP_983716.1 PFAM: glycosyl transferase, family 39; KEGG: pol:Bpro_4028 glycosyl transferase, family 39 YP_983717.1 PFAM: conserved hypothetical protein 374; KEGG: pol:Bpro_4029 conserved hypothetical protein 374 YP_983718.1 PFAM: UbiA prenyltransferase; KEGG: pol:Bpro_4030 UbiA prenyltransferase YP_983719.1 KEGG: pol:Bpro_4033 putative zinc protease protein YP_983720.1 KEGG: pol:Bpro_4197 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_983721.1 TIGRFAM: putative polyhydroxyalkanoic acid system protein; KEGG: rfr:Rfer_3533 hypothetical protein YP_983722.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4035 transcriptional regulator, LysR family YP_983723.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4036 L-carnitine dehydratase/bile acid-inducible protein F YP_983724.1 PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4037 pyruvate carboxyltransferase YP_983725.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_4038 glyoxalase/bleomycin resistance protein/dioxygenase YP_983726.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4039 uncharacterized protein UPF0065 YP_983727.1 PFAM: acyl-coA-binding protein, ACBP; KEGG: pol:Bpro_4041 acyl-coA-binding protein, ACBP YP_983728.1 PFAM: protein of unknown function UPF0089; KEGG: pol:Bpro_4042 protein of unknown function UPF0089 YP_983729.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_983730.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4045 transcriptional regulator, LuxR family YP_983731.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: pol:Bpro_4046 periplasmic sensor signal transduction histidine kinase YP_983732.1 KEGG: pol:Bpro_4047 response regulator receiver domain protein (CheY-like) YP_983733.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_4048 glycine C-acetyltransferase YP_983734.1 SMART: Rhodanese domain protein; KEGG: pol:Bpro_4049 rhodanese-like YP_983735.1 PFAM: protein of unknown function DUF344; KEGG: pol:Bpro_4050 protein of unknown function DUF344 YP_983736.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3709 ABC branched chain amino acid family transporter, ATPase subunit YP_983737.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3708 ABC branched chain amino acid family transporter, fused ATPase and inner membrane subunit YP_983738.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A3707 ABC branched chain amino acid family transporter, inner membrane subunit YP_983739.1 PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A3706 ABC branched chain amino acid family transporter, periplasmic ligand binding protein YP_983740.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; Cache, type 2 domain protein; KEGG: rso:RSc0021 probable transmembrane sensor histidine kinase transcription regulator protein YP_983741.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bcn:Bcen_5187 two component transcriptional regulator, LuxR family YP_983742.1 KEGG: pol:Bpro_4054 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_983743.1 KEGG: rfr:Rfer_0521 hypothetical protein YP_983744.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4232 uncharacterized protein UPF0065 YP_983745.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4075 ABC transporter related YP_983746.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4076 ABC transporter related YP_983747.1 KEGG: rfr:Rfer_1077 extracellular ligand-binding receptor YP_983748.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_4078 inner-membrane translocator YP_983749.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_4079 inner-membrane translocator YP_983750.1 PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type YP_983751.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4072 ABC transporter ATP-binding protein YP_983752.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4073 ABC transporter ATP binding protein YP_983753.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dipeptide ABC transporter, permease protein DppC, putative YP_983754.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4075 ABC transporter permease protein YP_983755.1 PFAM: extracellular solute-binding protein, family 5; KEGG: eca:ECA4076 ABC transporter, substrate binding protein YP_983756.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: eca:ECA4077 putative mandelate racemase / muconate lactonizing enzyme YP_983757.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bcn:Bcen_0685 GntR-like YP_983758.1 KEGG: pfo:Pfl_1042 hypothetical protein YP_983759.1 KEGG: pfo:Pfl_1041 ATPase-like YP_983760.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_983761.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: bbr:BB3846 hypothetical protein YP_983762.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: pol:Bpro_0643 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_983763.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_983764.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_3184 RND efflux system, outer membrane lipoprotein, NodT YP_983765.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3185 secretion protein HlyD YP_983766.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3186 ABC transporter related YP_983767.1 PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3187 protein of unknown function DUF214 YP_983769.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: tbd:Tbd_2707 hemolysin-like protein YP_983773.1 PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5089 transposase, IS4 YP_983774.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_983775.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: plu:plu0744 hypothetical protein YP_983776.1 KEGG: eba:ebA3407 predicted TRAP-type uncharacterized transport system protein, periplasmic component YP_983777.1 SMART: zinc finger, RanBP2-type; KEGG: eba:ebA3408 hypothetical protein YP_983778.1 PFAM: protein of unknown function DUF28; KEGG: pol:Bpro_2928 protein of unknown function DUF28 YP_983779.1 catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis YP_983780.1 KEGG: rfr:Rfer_0376 hypothetical protein YP_983781.1 KEGG: reu:Reut_A1356 hypothetical protein YP_983782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_0492 ATPase, E1-E2 type YP_983783.1 PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase family protein YP_983784.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA4568 putative enoyl-acyl carrier protein reductase YP_983785.1 PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: sil:SPO0115 MaoC family protein/phosphate acetyl/butaryl transferase YP_983786.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: reu:Reut_A1203 acetate kinase YP_983787.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_0636 MscS mechanosensitive ion channel YP_983788.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_983789.1 KEGG: pol:Bpro_1655 hypothetical protein YP_983790.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0633 ABC transporter related YP_983791.1 TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0632 ABC-2 type transporter, NodJ family YP_983792.1 PFAM: CheB methylesterase; KEGG: eba:ebA2148 chemotaxis response regulator containing a CheY-like receiver domain and a protein-glutamate methylesterase YP_983793.1 KEGG: sme:SMc01549 hypothetical protein YP_983794.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0150 extracellular ligand-binding receptor YP_983795.1 PFAM: YceI family protein; KEGG: nma:NMA1457 periplasmic protein YP_983796.1 PFAM: YceI family protein; KEGG: dar:Daro_2795 YceI YP_983797.1 PFAM: cytochrome B561; KEGG: bpm:BURPS1710b_3379 cytochrome b561 YP_983798.1 KEGG: pol:Bpro_0625 hypothetical protein YP_983799.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_983800.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: xac:XAC3367 hypothetical protein YP_983801.1 PFAM: peptidase M23B; KEGG: xcv:XCV3487 putative metalloendopeptidase YP_983802.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: eba:ebA2889 hypothetical protein YP_983803.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: reu:Reut_B3942 hypothetical protein YP_983804.1 molecular chaperone YP_983805.1 KEGG: ddi:DDB0204485 hypothetical protein YP_983809.1 KEGG: ttj:TTHA0775 hypothetical protein YP_983810.1 KEGG: dge:Dgeo_2435 hypothetical protein YP_983811.1 PFAM: PGAP1 family protein; KEGG: rfr:Rfer_3545 PGAP1-like YP_983812.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_0606 pseudouridine synthase, Rsu YP_983813.1 KEGG: rso:RSc0361 probable transmembrane protein YP_983814.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bja:blr5281 two-component response regulator YP_983815.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: mfa:Mfla_0814 signal transduction histidine kinase, glucose-6-phosphate specific YP_983816.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: mfa:Mfla_1253 TonB-dependent receptor YP_983817.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bpm:BURPS1710b_1397 DNA-binding response regulator KdpE YP_983818.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; KEGG: dar:Daro_1080 ATP-binding region, ATPase-like:histidine kinase A, N-terminal:osmosensitive K+ channel His kinase sensor YP_983819.1 KEGG: bbr:BB3919 potassium-transporting ATPase C chain; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K+ transporting ATPase, KdpC subunit YP_983820.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_1086 ATPase, E1-E2 type:potassium-translocating P-type ATPase, B subunit YP_983821.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_983822.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pol:Bpro_0605 transcriptional regulator, Crp/Fnr family YP_983823.1 PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_4184 extracellular ligand-binding receptor YP_983824.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_0604 AMP-dependent synthetase and ligase YP_983825.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3541 ABC transporter related YP_983826.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_0602 inner-membrane translocator YP_983827.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_0601 inner-membrane translocator YP_983828.1 KEGG: rfr:Rfer_3538 hypothetical protein YP_983829.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3537 ABC transporter related YP_983830.1 KEGG: pol:Bpro_0598 putative phenylacetate-CoA ligase YP_983831.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0597 uncharacterized protein UPF0065 YP_983832.1 KEGG: pol:Bpro_0595 hypothetical protein YP_983833.1 KEGG: pol:Bpro_0594 hypothetical protein YP_983834.1 catalyzes the conversion of salicylyl-CoA to gentisyl-CoA YP_983835.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_0592 transcriptional regulator, MarR family YP_983836.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_983837.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0590 acyl-CoA dehydrogenase-like YP_983838.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_0589 benzoate-CoA ligase family YP_983839.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_0588 thioesterase superfamily YP_983840.1 PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_0587 endoribonuclease L-PSP YP_983841.1 KEGG: pcr:Pcryo_0811 17 kDa surface antigen YP_983843.1 SMART: cyclic nucleotide-binding; KEGG: pol:Bpro_0177 cyclic nucleotide-binding domain (cNMP-BD) protein YP_983844.1 SMART: regulatory protein, Crp; KEGG: pol:Bpro_0177 cyclic nucleotide-binding domain (cNMP-BD) protein YP_983845.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_2543 two component transcriptional regulator, LuxR family YP_983846.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: pol:Bpro_4433 two component transcriptional regulator, fis family YP_983847.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4434 multi-sensor signal transduction histidine kinase YP_983848.1 KEGG: pol:Bpro_4435 putative proline rich signal peptide protein YP_983849.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_4436 sun protein YP_983850.1 KEGG: eba:p2A365 transposase, fragment YP_983851.1 KEGG: mac:MA0437 transposase YP_983852.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein YP_983853.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1 YP_983854.1 PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_4439 peptidase M48, Ste24p YP_983855.1 PFAM: LemA family protein; KEGG: pol:Bpro_4440 LemA YP_983856.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_983857.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_983858.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_983859.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_983860.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_983861.1 binds directly to 23S ribosomal RNA YP_983862.1 KEGG: pol:Bpro_4447 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein YP_983863.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_983864.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_983865.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_983866.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_983867.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_983868.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: pol:Bpro_4454 threonine aldolase YP_983869.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_983870.1 PFAM: Chorismate mutase; KEGG: pol:Bpro_4456 chorismate mutase YP_983871.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_983872.1 KEGG: pol:Bpro_4459 putative lipoprotein transmembrane YP_983873.1 KEGG: pol:Bpro_4462 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_983874.1 PFAM: Ketopantoate reductase ApbA/PanE, C-terminal domain protein; KEGG: pol:Bpro_0197 2-dehydropantoate 2-reductase YP_983875.1 PFAM: cytochrome B561; KEGG: par:Psyc_2075 putative nickel-dependent hydrogenase cytochrome b-type subunit YP_983876.1 KEGG: psp:PSPPH_3452 hypothetical protein YP_983877.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: pol:Bpro_4466 ribulose-phosphate 3-epimerase YP_983878.1 protein associated with Co2+ and Mg2+ efflux YP_983879.1 KEGG: pol:Bpro_4468 putative site-specific recombinase transmembrane protein YP_983880.1 PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4469 sodium/hydrogen exchanger YP_983881.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity YP_983882.1 KEGG: pol:Bpro_4471 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein YP_983883.1 PFAM: phosphatidylglycerophosphatase A; KEGG: pol:Bpro_4475 phosphatidylglycerophosphatase A YP_983884.1 PFAM: CinA domain protein; KEGG: pol:Bpro_4476 CinA-like YP_983886.1 PFAM: OsmC family protein; KEGG: rru:Rru_A0580 OsmC-like protein YP_983887.1 KEGG: rfr:Rfer_2633 spermidine synthase-like YP_983888.1 PFAM: regulatory protein, Crp; KEGG: pol:Bpro_4529 putative transcriptional regulator, Crp/Fnr family YP_983890.1 KEGG: tte:TTE2411 S-layer homology domain YP_983891.1 KEGG: pol:Bpro_1320 hypothetical protein YP_983892.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2859 UbiE/COQ5 methyltransferase YP_983893.1 KEGG: bxe:Bxe_A2123 putative chaperone protein, HscA/DnaK YP_983894.1 KEGG: bxe:Bxe_A2124 putative molecular chaperone protein HspA/DnaK YP_983895.1 KEGG: bte:BTH_II1321 hypothetical protein YP_983896.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_1848 extracellular ligand-binding receptor YP_983897.1 KEGG: cvi:CV3664 probable isocitrate dehydrogenase (NADP); TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type YP_983898.1 PFAM: SpoVT/AbrB domain protein; KEGG: mca:MCA1622 virulence-associated protein VagC, putative YP_983899.1 PFAM: PilT protein domain protein; KEGG: mca:MCA1623 virulence associated protein VagD, putative YP_983900.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_983901.1 KEGG: pol:Bpro_4516 haloacid dehalogenase, type II; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_983902.1 PFAM: pyruvate carboxyltransferase; L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4514 pyruvate carboxyltransferase YP_983903.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_1091 two component transcriptional regulator, winged helix family YP_983904.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: rfr:Rfer_1092 periplasmic sensor signal transduction histidine kinase YP_983905.1 PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0342 aldo/keto reductase YP_983906.1 PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_1097 extracellular solute-binding protein, family 1 YP_983907.1 KEGG: cvi:CV3298 maltoporin precursor YP_983908.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1096 binding-protein-dependent transport systems inner membrane component YP_983909.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1095 binding-protein-dependent transport systems inner membrane component YP_983910.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_1094 ABC transporter related YP_983911.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_983912.1 KEGG: eba:ebA584 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase YP_983913.1 KEGG: rfr:Rfer_0192 hypothetical protein YP_983914.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4493 transcriptional regulator, LysR family YP_983915.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_4492 lysine exporter protein (LysE/YggA) YP_983916.1 specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_983917.1 PFAM: PsiF repeat protein; KEGG: reu:Reut_A0351 PsiF YP_983918.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_983919.1 PFAM: Sporulation domain protein; KEGG: pol:Bpro_4489 sporulation related YP_983920.1 PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_4488 DsbA oxidoreductase YP_983921.1 PFAM: surface antigen (D15); Polypeptide-transport-associated domain protein, ShlB-type; KEGG: par:Psyc_1782 putative heme-hemopexin utilization protein B YP_983922.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Collagen triple helix repeat; filamentous haemagglutinin domain protein; KEGG: mlo:mlr0585 hypothetical glycine-rich protein YP_983923.1 KEGG: par:Psyc_1780 hypothetical protein YP_983924.1 PFAM: glycosyl transferase, family 2; KEGG: pcu:pc0452 hypothetical protein YP_983925.1 PFAM: OstA family protein; KEGG: pol:Bpro_4487 OstA-like protein YP_983926.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4486 ABC transporter related YP_983927.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: pol:Bpro_4485 sigma-54 (RpoN) YP_983928.1 PFAM: putative RNA methylase; THUMP domain protein; KEGG: pol:Bpro_4484 putative RNA methylase YP_983929.1 KEGG: pol:Bpro_4483 protein of unknown function DUF132 YP_983930.1 KEGG: bja:blr7500 hypothetical protein YP_983932.1 PFAM: PilT protein domain protein; KEGG: tth:TTC0113 hypothetical protein YP_983933.1 TIGRFAM: prevent-host-death family protein; KEGG: mag:amb1707 antitoxin of toxin-antitoxin stability system YP_983934.1 TIGRFAM: cytidyltransferase-related domain; PFAM: NUDIX hydrolase; cytidylyltransferase; KEGG: syf:Synpcc7942_0205 cytidyltransferase-related YP_983935.1 KEGG: ade:Adeh_0285 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase YP_983936.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_983937.1 KEGG: rpb:RPB_2359 hypothetical protein YP_983938.1 PFAM: NUDIX hydrolase; KEGG: hch:HCH_06996 ADP-ribose pyrophosphatase YP_983939.1 PFAM: SEC-C motif domain protein; KEGG: pol:Bpro_4482 sec-C motif YP_983941.1 KEGG: xom:XOO_3993 ISXo7 transposase YP_983942.1 KEGG: dar:Daro_0912 hypothetical protein YP_983943.1 PFAM: Methyltransferase type 12; KEGG: rme:Rmet_2952 MCP methyltransferase, CheR-type YP_983944.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rso:RSc2736 transmembrane sensor histidine kinase transcription regulator protein YP_983945.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rso:RSc2737 two component response regulator transcription regulator protein YP_983946.1 PFAM: response regulator receiver; KEGG: reu:Reut_A2812 response regulator receiver YP_983947.1 KEGG: pol:Bpro_4477 hypothetical protein YP_983948.1 KEGG: mfa:Mfla_1491 arsenite-activated ATPase (ArsA); TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase YP_983949.1 PFAM: restriction endonuclease; KEGG: gme:Gmet_1797 DNA topoisomerase I:restriction endonuclease YP_983950.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_983951.1 PFAM: glutamine amidotransferase, class-II; KEGG: pol:Bpro_4539 glutamine amidotransferase, class-II YP_983952.1 KEGG: bxe:Bxe_A2968 hypothetical protein YP_983953.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_983954.1 PFAM: zinc finger, SWIM domain protein; KEGG: hch:HCH_05567 protein containing SWIM Zn-chelating domain YP_983955.1 KEGG: sma:SAV3459 hypothetical protein YP_983956.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: hch:HCH_05565 MoxR-like ATPase YP_983957.1 KEGG: hch:HCH_05564 hypothetical protein YP_983958.1 KEGG: plu:plu3717 hypothetical protein YP_983959.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: hch:HCH_05563 hypothetical protein YP_983961.1 PFAM: Negative transcriptional regulator; KEGG: dar:Daro_0091 negative transcriptional regulator YP_983962.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_1486 two component transcriptional regulator, LuxR family YP_983963.1 KEGG: rfr:Rfer_1485 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_983964.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_1484 TRAP dicarboxylate transporter, DctP subunit YP_983965.1 involved in the transport of C4-dicarboxylates across the membrane YP_983966.1 PFAM: K+ potassium transporter; KEGG: pol:Bpro_4582 K+ potassium transporter YP_983967.1 TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_4583 glutamate--cysteine ligase GshA YP_983968.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_983969.1 KEGG: pol:Bpro_4585 hypothetical protein YP_983970.1 KEGG: rfr:Rfer_2344 hypothetical protein YP_983971.1 PFAM: nitroreductase; KEGG: pol:Bpro_4587 nitroreductase YP_983972.1 KEGG: pol:Bpro_4588 ribonucleoside reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit, N terminal domain protein; SMART: Hedgehog/intein hint domain protein YP_983973.1 PFAM: carbonic anhydrase; KEGG: pol:Bpro_4590 carbonate dehydratase YP_983974.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_4591 PpiC-type peptidyl-prolyl cis-trans isomerase YP_983975.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: rfr:Rfer_2795 respiratory nitrate reductase, gamma subunit YP_983976.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: pol:Bpro_4593 nitrate reductase molybdenum cofactor assembly chaperone YP_983977.1 TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4594 nitrate reductase, beta subunit YP_983978.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pol:Bpro_4595 nitrate reductase, alpha subunit YP_983979.1 KEGG: pol:Bpro_4596 nitrate/nitrite antiporter YP_983980.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4597 major facilitator superfamily MFS_1 YP_983981.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_4598 two component transcriptional regulator, LuxR family YP_983982.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_4599 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ YP_983985.1 KEGG: pol:Bpro_4831 integrase YP_983986.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_983987.1 PFAM: regulatory protein, AsnC/Lrp family; Helix-turn-helix, type 11 domain protein; KEGG: pol:Bpro_0400 transcriptional regulator, AsnC family YP_983988.1 catalyzes the formation of L-proline from L-ornithine YP_983989.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pol:Bpro_4603 arginase YP_983990.1 KEGG: rfr:Rfer_1939 hypothetical protein YP_983991.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_983992.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_1937 transcriptional regulator, Crp/Fnr family YP_983993.1 KEGG: rfr:Rfer_1936 hypothetical protein YP_983994.1 KEGG: rfr:Rfer_1935 hypothetical protein YP_983995.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding YP_983996.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: rfr:Rfer_1933 cytochrome c oxidase, cbb3-type, subunit III YP_983997.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: rfr:Rfer_1932 Cbb3-type cytochrome oxidase component YP_983998.1 CcoO; FixO YP_983999.1 CcoN; FixN YP_984000.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rfr:Rfer_1929 cytochrome oxidase maturation protein, cbb3-type YP_984001.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_1927 heavy metal translocating P-type ATPase YP_984002.1 PFAM: Rare lipoprotein B; KEGG: pol:Bpro_4604 rare lipoprotein B YP_984003.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_984004.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_4606 biopolymer transport protein ExbD/TolR YP_984005.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_4607 MotA/TolQ/ExbB proton channel YP_984006.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_984007.1 PFAM: SmpA/OmlA domain protein; KEGG: pol:Bpro_4609 SmpA/OmlA YP_984008.1 PFAM: ferric-uptake regulator; KEGG: pol:Bpro_4610 ferric uptake regulator, FUR family YP_984009.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_984010.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: pol:Bpro_4612 PTS IIA-like nitrogen-regulatory protein PtsN YP_984011.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: pol:Bpro_4613 sigma 54 modulation protein/ribosomal protein S30EA YP_984012.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_4615 magnesium and cobalt transport protein CorA YP_984013.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_984014.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4543 AMP-dependent synthetase and ligase YP_984015.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: pol:Bpro_4544 NAD(P) transhydrogenase, beta subunit YP_984016.1 KEGG: pol:Bpro_4545 NAD(P) transhydrogenase, subunit alpha part 2 YP_984017.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pol:Bpro_4546 NAD(P)(+) transhydrogenase (AB-specific) YP_984018.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_4547 methylmalonate-semialdehyde dehydrogenase YP_984019.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4548 transcriptional regulator, LysR family YP_984020.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_4549 NUDIX hydrolase YP_984022.1 PFAM: Uncharacterized protein UPF0065; protein of unknown function DUF453; KEGG: pol:Bpro_4551 protein of unknown function DUF453 YP_984023.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4552 transcriptional regulator, LysR family YP_984024.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4553 uncharacterized protein UPF0065 YP_984025.1 KEGG: pol:Bpro_4554 hypothetical protein YP_984026.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4555 L-carnitine dehydratase/bile acid-inducible protein F YP_984027.1 PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_4556 HpcH/HpaI aldolase YP_984028.1 PFAM: fumarate lyase; KEGG: pol:Bpro_4557 fumarate lyase YP_984029.1 PFAM: porin, Gram-negative type; KEGG: pol:Bpro_4558 porin, gram-negative type YP_984030.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065 YP_984031.1 TIGRFAM: CitB domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3489 citrate utilization protein B YP_984032.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica YP_984033.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0637 transcriptional regulator, LysR family YP_984034.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_984035.1 PFAM: MltA-interacting MipA family protein; KEGG: pol:Bpro_4564 MltA-interacting MipA YP_984036.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pol:Bpro_4565 single-strand binding protein YP_984037.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: rfr:Rfer_1155 Cl-channel, voltage gated YP_984038.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4567 major facilitator superfamily MFS_1 YP_984039.1 KEGG: rme:Rmet_3878 hypothetical protein YP_984040.1 KEGG: mca:MCA0458 cysteine rich repeat domain protein, putative YP_984042.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0208 two component transcriptional regulator, winged helix family YP_984043.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: bps:BPSL1037 putative two-component system, sensor kinase YP_984044.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pol:Bpro_4568 excinuclease ABC, A subunit YP_984045.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: yps:YPTB2498 possible DMT superfamliy, DME family drug/metabolite exporter YP_984046.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMc01525 putative dipeptide binding periplasmic protein YP_984047.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr5514 ABC transporter, permease protein YP_984048.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_870 putative dipeptide transport system permease ABC transporter protein YP_984049.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc01528 putative dipeptide transport ATP-binding ABC transporter protein YP_984050.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mlr5517 ABC transporter, ATP-binding protein YP_984051.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bja:bll6212 transcriptional regulatory protein YP_984052.1 PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein YP_984053.1 KEGG: eba:ebB97 probable p-cresol methylhydroxylase subunit YP_984054.1 KEGG: noc:Noc_2407 hypothetical protein YP_984055.1 PFAM: FAD linked oxidase domain protein; KEGG: eba:ebA3165 probable p-cresol methylhydroxylase subunit YP_984056.1 KEGG: eba:ebA5757 conserved hypothetical protein, possibly involved in regulation of phenolics degradation YP_984057.1 PFAM: peptidase M19, renal dipeptidase; KEGG: hypothetical protein YP_984058.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_4578 thioesterase superfamily YP_984059.1 KEGG: bpm:BURPS1710b_A1122 putative outer membrane protein YP_984060.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_984061.1 KEGG: pol:Bpro_4619 phage SPO1 DNA polymerase-related protein YP_984062.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4620 ribosomal-protein-alanine acetyltransferase YP_984063.1 PFAM: peptidase M22, glycoprotease; KEGG: pol:Bpro_4621 peptidase M22, glycoprotease YP_984064.1 KEGG: pol:Bpro_4622 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C YP_984065.1 PFAM: transglutaminase domain protein; KEGG: rpc:RPC_0968 transglutaminase-like YP_984066.1 KEGG: eba:ebA6983 predicted N-formylglutamate amidohydrolase YP_984067.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; KEGG: pol:Bpro_0099 alkylphosphonate utilization operon protein PhnA YP_984068.1 KEGG: rfr:Rfer_3825 hypothetical protein YP_984069.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_C1356 alcohol dehydrogenase (Zn-dependent) YP_984070.1 KEGG: rfr:Rfer_3307 hypothetical protein YP_984071.1 PFAM: iron permease FTR1; KEGG: rfr:Rfer_3306 iron permease FTR1 YP_984072.1 KEGG: rfr:Rfer_0328 hypothetical protein YP_984073.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_984074.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: pol:Bpro_2065 esterase, PHB depolymerase YP_984075.1 KEGG: pol:Bpro_2066 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domain YP_984076.1 PFAM: SlyX family protein; KEGG: bbr:BB1266 SlyX protein YP_984077.1 PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0371 extracellular ligand-binding receptor YP_984078.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_4625 SUA5/YciO/YrdC/YwlC YP_984079.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_984080.1 KEGG: pol:Bpro_4627 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_984081.1 PFAM: Thioredoxin domain; KEGG: pol:Bpro_4628 thioredoxin YP_984082.1 KEGG: rme:Rmet_0309 hypothetical protein YP_984083.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bms:BR1197 ThiJ/PfpI family protein YP_984084.1 KEGG: hch:HCH_00932 hypothetical protein YP_984085.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_984086.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_984087.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4631 histidine kinase YP_984088.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4632 two component transcriptional regulator, winged helix family YP_984089.1 KEGG: pol:Bpro_4633 PAP2 (acid phosphatase) superfamily protein-like YP_984090.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_984091.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_984092.1 PFAM: branched-chain amino acid transport; KEGG: pol:Bpro_4636 branched-chain amino acid transport YP_984093.1 PFAM: AzlC family protein; KEGG: pol:Bpro_4637 AzlC-like YP_984094.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: pol:Bpro_4638 methionyl-tRNA formyltransferase YP_984095.1 KEGG: pol:Bpro_4639 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_984096.1 PFAM: Peptidoglycan-binding LysM; KEGG: pol:Bpro_4640 peptidoglycan-binding LysM YP_984097.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB YP_984098.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pol:Bpro_4641 DNA processing protein DprA, putative YP_984099.1 PFAM: protein of unknown function DUF494; KEGG: pol:Bpro_4642 protein of unknown function DUF494 YP_984100.1 KEGG: pol:Bpro_4643 protein of unknown function DUF1631 YP_984101.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_984102.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_984103.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pol:Bpro_4646 preprotein translocase, YajC subunit YP_984104.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_984105.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4648 transcriptional regulator, AsnC family YP_984107.1 KEGG: rsp:RSP_3768 hypothetical protein YP_984108.1 PFAM: protein of unknown function DUF839; KEGG: pol:Bpro_1725 twin-arginine translocation pathway signal YP_984109.1 KEGG: pol:Bpro_4650 hypothetical protein YP_984110.1 PFAM: MltA domain protein; 3D domain protein; KEGG: pol:Bpro_4651 MltA YP_984111.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4652 two component transcriptional regulator, LuxR family YP_984112.1 KEGG: pol:Bpro_4653 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_984113.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_4654 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_984114.1 KEGG: pol:Bpro_4655 hypothetical protein YP_984115.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: pol:Bpro_4656 glutamate-ammonia-ligase adenylyltransferase YP_984116.1 PFAM: regulatory protein, TetR; KEGG: mca:MCA1807 transcriptional regulator, TetR family YP_984117.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_4106 RND efflux system, outer membrane lipoprotein, NodT YP_984118.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_4105 secretion protein HlyD YP_984119.1 PFAM: acriflavin resistance protein; KEGG: dar:Daro_0459 acriflavin resistance protein YP_984121.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; KEGG: ssn:SSO_2087 hypothetical protein YP_984122.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: neu:NE0712 DUF172 YP_984123.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cvi:CV4290 probable transcriptional regulator LysR-family YP_984124.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4458 hypothetical protein YP_984125.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase YP_984126.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_C6140 zinc-containing alcohol dehydrogenase superfamily YP_984127.1 TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: pol:Bpro_4657 RfaE bifunctional protein, domain II YP_984128.1 KEGG: pol:Bpro_4658 hypothetical protein YP_984129.1 PFAM: glutathione peroxidase; KEGG: pol:Bpro_4659 glutathione peroxidase YP_984130.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_4661 glutathione S-transferase-like YP_984131.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_984132.1 KEGG: pol:Bpro_4663 hypothetical protein YP_984133.1 PFAM: protein of unknown function DUF1289; KEGG: pol:Bpro_4664 protein of unknown function DUF1289 YP_984134.1 PFAM: Integral membrane protein TerC; KEGG: pol:Bpro_4666 integral membrane protein TerC YP_984135.1 PFAM: membrane protein of unknown function; KEGG: pol:Bpro_4668 membrane protein of unknown function YP_984136.1 PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_4669 peptidase M48, Ste24p YP_984137.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: pol:Bpro_4671 molybdenum cofactor biosynthesis protein C YP_984138.1 PFAM: phage integrase family protein; KEGG: mag:amb3648 integrase YP_984140.1 KEGG: reu:Reut_A2492 hypothetical protein YP_984141.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease YP_984142.1 KEGG: psp:PSPPH_4218 hypothetical protein YP_984143.1 PFAM: DNA-directed DNA polymerase; KEGG: psp:PSPPH_4219 DNA polymerase I domain protein YP_984144.1 KEGG: dar:Daro_0799 hypothetical protein YP_984145.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: dar:Daro_3523 resolvase, N-terminal:resolvase helix-turn-helix region YP_984147.1 KEGG: tel:tll1781 unknown protein YP_984148.1 KEGG: tel:tll1780 unknown protein YP_984154.1 KEGG: rfr:Rfer_4321 hypothetical protein YP_984156.1 KEGG: bur:Bcep18194_B1226 histone-like nucleoid-structuring protein H-NS YP_984158.1 KEGG: rfr:Rfer_4040 molybdenum cofactor biosynthesis protein C YP_984159.1 PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase YP_984160.1 KEGG: pol:Bpro_4670 FimB YP_984161.1 PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin YP_984162.1 PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin YP_984163.1 PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin YP_984164.1 PFAM: DNA polymerase, beta domain protein region; KEGG: noc:Noc_1203 DNA polymerase, beta-like region YP_984165.1 PFAM: Forkhead-associated protein; KEGG: pol:Bpro_4677 FHA domain containing protein YP_984166.1 PFAM: protein phosphatase 2C domain protein; KEGG: pol:Bpro_4678 protein serine/threonine phosphatases YP_984167.1 PFAM: Integral membrane protein TerC; KEGG: rfr:Rfer_3943 integral membrane protein TerC YP_984168.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_984169.1 catalyzes the interconversion of succinyl-CoA and succinate YP_984170.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_984171.1 PFAM: regulatory protein RecX; KEGG: pol:Bpro_4684 regulatory protein RecX YP_984172.1 KEGG: pol:Bpro_4685 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_984173.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_4686 transcriptional regulator, MarR family YP_984174.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4687 two component transcriptional regulator, winged helix family YP_984175.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: pol:Bpro_4688 periplasmic sensor signal transduction histidine kinase YP_984176.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: pol:Bpro_4701 peptidase C26 YP_984177.1 KEGG: sil:SPO1521 regulatory protein, putative YP_984178.1 PFAM: ApbE family lipoprotein; KEGG: rpc:RPC_0433 twin-arginine translocation pathway signal YP_984179.1 decatenates replicating daughter chromosomes YP_984180.1 PFAM: nuclear protein SET; KEGG: pol:Bpro_4715 nuclear protein SET YP_984181.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: pol:Bpro_4716 biotin--acetyl-CoA-carboxylase ligase YP_984182.1 KEGG: pol:Bpro_4717 putative signal peptide protein YP_984183.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate YP_984184.1 KEGG: pol:Bpro_4719 peptidylprolyl isomerase, FKBP-type YP_984185.1 KEGG: pol:Bpro_4720 hypothetical protein YP_984186.1 PFAM: NnrS family protein; KEGG: pol:Bpro_4727 NnrS YP_984188.1 KEGG: ath:At1g26250 proline-rich extensin, putative YP_984189.1 KEGG: ecc:c0818 tolA protein YP_984190.1 KEGG: rfr:Rfer_4005 hypothetical protein YP_984192.1 KEGG: xac:XAC0147 hypothetical protein YP_984193.1 KEGG: pol:Bpro_4762 hypothetical protein YP_984194.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: pol:Bpro_4763 excisionase/Xis, DNA-binding YP_984196.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pol:Bpro_4758 filamentation induced by cAMP protein Fic YP_984197.1 KEGG: pol:Bpro_4751 hypothetical protein YP_984198.1 KEGG: bbr:BB1298 hypothetical protein YP_984199.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rfr:Rfer_4017 glutathione S-transferase-like YP_984200.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rba:RB12285 conserved hypothetical protein-putative dimethyladenosine transferase (rRNA methylation) YP_984201.1 PFAM: transglutaminase domain protein; KEGG: hch:HCH_03352 transglutaminase-like enzyme, putative cysteine protease YP_984202.1 KEGG: rfr:Rfer_3022 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane YP_984203.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ret:RHE_CH02674 probable oxidoreductase protein YP_984204.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR; KEGG: pol:Bpro_4767 short-chain dehydrogenase/reductase SDR YP_984205.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4768 transcriptional regulator, LysR family YP_984206.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rfr:Rfer_4110 3-demethylubiquinone-9 3-methyltransferase YP_984207.1 PFAM: Collagen triple helix repeat; KEGG: rfr:Rfer_0080 collagen triple helix protein YP_984208.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_4775 pirin-like YP_984209.1 PFAM: response regulator receiver; KEGG: pol:Bpro_0607 response regulator receiver domain protein (CheY-like) YP_984210.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4502 transcriptional regulator, TetR family YP_984211.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_984212.1 KEGG: bur:Bcep18194_C7441 hypothetical protein YP_984213.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rfr:Rfer_2436 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_984214.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_2631 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase YP_984215.1 PFAM: regulatory protein, MerR; KEGG: pol:Bpro_3479 transcriptional regulator, MerR family YP_984216.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A1849 major facilitator superfamily MFS_1 YP_984217.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RSc1152 probable transcription regulator protein YP_984218.1 KEGG: rpd:RPD_1710 hypothetical protein YP_984219.1 KEGG: pol:Bpro_4808 hypothetical protein YP_984220.1 Catalyzes the deamination of cytosine to uracil and ammonia YP_984221.1 KEGG: mma:MM3344 transposase YP_984222.1 KEGG: mma:MM3343 transposase YP_984223.1 KEGG: psb:Psyr_2657 hypothetical protein YP_984224.1 PFAM: ribonuclease II; RNA binding S1 domain protein; KEGG: pol:Bpro_2925 exoribonuclease II YP_984225.1 PFAM: protein of unknown function DUF1232; KEGG: pol:Bpro_2926 hypothetical protein YP_984226.1 PFAM: surface antigen (D15); Polypeptide-transport-associated domain protein, ShlB-type; KEGG: pfl:PFL_2820 outer membrane protein, OMP85 family YP_984227.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: rso:RS03099 putative hemagglutinin-related protein YP_984229.1 KEGG: pol:Bpro_2929 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein YP_984230.1 PFAM: protein of unknown function DUF891; KEGG: xft:PD1176 hypothetical protein YP_984231.1 KEGG: rso:RS05545 hypothetical protein YP_984232.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_984233.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines YP_984234.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_984235.1 KEGG: bcn:Bcen_5723 amidase, hydantoinase/carbamoylase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein YP_984237.1 KEGG: cps:CPS_0382 hypothetical protein YP_984238.1 KEGG: mca:MCA1565 protozoan/cyanobacterial globin family protein YP_984240.1 PFAM: Calcium/calmodulin dependent protein kinase II, association-domain protein; KEGG: reu:Reut_A2135 conserved hypothetical protein 2246 YP_984241.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: pol:Bpro_1399 3-demethylubiquinone-9 3-methyltransferase YP_984242.1 PFAM: cytochrome P450; KEGG: pol:Bpro_1581 cytochrome P450 YP_984243.1 KEGG: pol:Bpro_1580 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_984244.1 TIGRFAM: dethiobiotin synthase; KEGG: bcn:Bcen_2319 dethiobiotin synthase YP_984245.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_984246.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1 YP_984247.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein YP_984249.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; KEGG: reu:Reut_B3988 regulatory protein, TetR YP_984250.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0374 transcriptional regulator, LysR family YP_984251.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_984252.1 KEGG: psp:PSPPH_2727 sugar-binding transcriptional regulator, LacI family YP_984253.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit YP_984254.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit YP_984255.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMb21438 putative C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide YP_984256.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: pol:Bpro_4822 histidine kinase YP_984257.1 PFAM: domain of unknown function DUF1745; KEGG: bte:BTH_II0732 hypothetical protein YP_984258.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-4 domain protein; KEGG: pol:Bpro_4822 histidine kinase YP_984259.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4824 response regulator receiver sensor signal transduction histidine kinase YP_984260.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4824 response regulator receiver sensor signal transduction histidine kinase YP_984261.1 KEGG: pol:Bpro_4825 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_984262.1 KEGG: sme:SMa0203 putative ABC transporter YP_984263.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll4203 sugar ABC transporter, ATP-binding protein YP_984264.1 PFAM: inner-membrane translocator; KEGG: mlo:mll4202 sugar ABC transporter, permease YP_984265.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_L_1646 ribose transport protein rbsC YP_984266.1 PFAM: protein kinase; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; SMART: serine/threonine protein kinase; KEGG: mxa:MXAN_4053 sensor histidine kinase YP_984267.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: pol:Bpro_4826 glyceraldehyde-3-phosphate dehydrogenase, type I YP_984268.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: pol:Bpro_4827 transketolase YP_984269.1 PFAM: Nucleotidyl transferase; KEGG: rfr:Rfer_0085 nucleotidyl transferase YP_984270.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: pol:Bpro_4829 peptidase M24 YP_984271.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: dar:Daro_1103 glutaredoxin family protein YP_984272.1 PFAM: glutaredoxin; KEGG: rfr:Rfer_0010 glutaredoxin YP_984273.1 PFAM: CBS domain containing protein; KEGG: pol:Bpro_2185 putative signal transduction protein with CBS domains YP_984274.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1504 ABC transporter related YP_984275.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0163 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_984276.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0162 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_984277.1 PFAM: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_0161 extracellular solute-binding protein, family 3 YP_984278.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_1500 transcriptional regulator, RpiR family YP_984279.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate YP_984280.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_984281.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_1497 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_984282.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein YP_984283.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_984284.1 KEGG: pol:Bpro_4860 hypothetical protein YP_984286.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_984287.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_4862 PpiC-type peptidyl-prolyl cis-trans isomerase YP_984288.1 PFAM: Organic solvent tolerance protein; KEGG: pol:Bpro_4863 organic solvent tolerance protein YP_984289.1 PFAM: aminoglycoside phosphotransferase; KEGG: pol:Bpro_4864 aminoglycoside phosphotransferase YP_984290.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_984291.1 PFAM: amidohydrolase 2; KEGG: rso:RS05190 probable hydrolase transmembrane protein YP_984292.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pol:Bpro_3370 transcriptional regulator, GntR family YP_984293.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3798 hypothetical protein YP_984294.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1449 twin-arginine translocation pathway signal YP_984295.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_4868 peptidase M20 YP_984296.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; KEGG: rso:RSc3161 probable two component response regulator transcription regulator protein YP_984297.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bbr:BB2739 probable two-component sensor histidine kinase YP_984298.1 PFAM: pentapeptide repeat protein; KEGG: ana:all3114 hypothetical protein YP_984300.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine YP_984301.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pol:Bpro_4871 heavy metal transport/detoxification protein YP_984302.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_4872 heavy metal translocating P-type ATPase YP_984303.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: pol:Bpro_4873 transcriptional regulator, MerR family YP_984306.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: noc:Noc_1587 transposase YP_984307.1 PFAM: transposase, IS4 family protein; KEGG: neu:NE2504 transposase IS4 family YP_984308.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: pol:Bpro_4875 2OG-Fe(II) oxygenase YP_984309.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rfr:Rfer_0443 hydroxypyruvate isomerase YP_984310.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pol:Bpro_4885 sulphate transporter YP_984311.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pol:Bpro_4886 chromate transporter YP_984312.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_4888 methionine biosynthesis MetW YP_984313.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_984314.1 PFAM: protein of unknown function UPF0016; KEGG: pol:Bpro_4890 protein of unknown function UPF0016 YP_984315.1 PFAM: Rh family protein/ammonium transporter; KEGG: pol:Bpro_4891 Rh-like protein/ammonium transporter YP_984316.1 PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif) YP_984317.1 PFAM: protein of unknown function DUF1239; KEGG: pol:Bpro_4896 protein of unknown function DUF1239 YP_984318.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pol:Bpro_4897 phosphatase KdsC YP_984319.1 KEGG: pol:Bpro_4898 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_984320.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_4900 potassium efflux system protein YP_984321.1 KEGG: pol:Bpro_4902 hypothetical protein YP_984322.1 PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_4903 cyclic nucleotide-binding domain (cNMP-BD) protein YP_984323.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_984324.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: pol:Bpro_4905 60 kDa inner membrane insertion protein YP_984325.1 PFAM: protein of unknown function DUF37; KEGG: pol:Bpro_4906 protein of unknown function DUF37 YP_984326.1 KEGG: pol:Bpro_4907 hypothetical protein YP_984327.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_984328.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_984329.1 KEGG: pol:Bpro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain YP_984330.1 KEGG: pol:Bpro_0003 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II YP_984331.1 KEGG: pol:Bpro_0009 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_984332.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive