-- dump date 20140619_234847 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_973154.1 121582712 4685348 complement(483..1040) 1 NC_008757.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rru:Rru_B0010 resolvase; resolvase domain-containing protein 1040 4685348 Pnap_4123 Polaromonas naphthalenivorans CJ2 resolvase domain-containing protein YP_973154.1 483 R 365044 CDS YP_973155.1 121582713 4685241 1218..1526 1 NC_008757.1 KEGG: rme:Rmet_6179 transposase Tn3; transposase Tn3 1526 4685241 Pnap_4124 Polaromonas naphthalenivorans CJ2 transposase Tn3 YP_973155.1 1218 D 365044 CDS YP_973156.1 121582714 4685471 complement(1477..2436) 1 NC_008757.1 PFAM: transposase, IS4 family protein; KEGG: bte:BTH_II0087 transposase; transposase, IS4 family protein 2436 4685471 Pnap_4125 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_973156.1 1477 R 365044 CDS YP_973157.1 121582715 4685208 complement(2737..3492) 1 NC_008757.1 PFAM: metallophosphoesterase; KEGG: serine/threonine protein phosphatase, putative; metallophosphoesterase 3492 4685208 Pnap_4126 Polaromonas naphthalenivorans CJ2 metallophosphoesterase YP_973157.1 2737 R 365044 CDS YP_973158.1 121582716 4685258 complement(3514..5871) 1 NC_008757.1 hypothetical protein 5871 4685258 Pnap_4127 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973158.1 3514 R 365044 CDS YP_973159.1 121582717 4685217 complement(6104..7399) 1 NC_008757.1 PFAM: HipA domain protein; KEGG: pol:Bpro_1566 HipA-like; HipA domain-containing protein 7399 4685217 Pnap_4128 Polaromonas naphthalenivorans CJ2 HipA domain-containing protein YP_973159.1 6104 R 365044 CDS YP_973160.1 121582718 4685252 7465..7740 1 NC_008757.1 hypothetical protein 7740 4685252 Pnap_4129 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973160.1 7465 D 365044 CDS YP_973161.1 121582719 4685272 8115..8825 1 NC_008757.1 hypothetical protein 8825 4685272 Pnap_4130 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973161.1 8115 D 365044 CDS YP_973162.1 121582720 4685453 complement(9783..10319) 1 NC_008757.1 hypothetical protein 10319 4685453 Pnap_4133 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973162.1 9783 R 365044 CDS YP_973163.1 121582721 4685402 10764..11669 1 NC_008757.1 KEGG: rso:RS02232 hypothetical lipoprotein transmembrane; hypothetical protein 11669 4685402 Pnap_4134 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973163.1 10764 D 365044 CDS YP_973164.1 121582722 4685324 11757..12239 1 NC_008757.1 hypothetical protein 12239 4685324 Pnap_4135 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973164.1 11757 D 365044 CDS YP_973165.1 121582723 4685414 12451..12690 1 NC_008757.1 hypothetical protein 12690 4685414 Pnap_4136 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973165.1 12451 D 365044 CDS YP_973166.1 121582724 4685396 12802..14004 1 NC_008757.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_C1182 putative phage integrase; phage integrase family protein 14004 4685396 Pnap_4137 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_973166.1 12802 D 365044 CDS YP_973167.1 121582725 4685474 14028..14369 1 NC_008757.1 PFAM: protein of unknown function DUF891; KEGG: bxe:Bxe_C1183 hypothetical protein; hypothetical protein 14369 4685474 Pnap_4138 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973167.1 14028 D 365044 CDS YP_973168.1 121582726 4685473 14356..14679 1 NC_008757.1 KEGG: bxe:Bxe_C1184 predicted transcriptional regulator; putative transcriptional regulator 14679 4685473 Pnap_4139 Polaromonas naphthalenivorans CJ2 putative transcriptional regulator YP_973168.1 14356 D 365044 CDS YP_973169.1 121582727 4685462 complement(15183..15839) 1 NC_008757.1 PFAM: OmpW family protein; KEGG: bxe:Bxe_C1185 outer membrane protein (porin), OmpW family; OmpW family protein 15839 4685462 Pnap_4140 Polaromonas naphthalenivorans CJ2 OmpW family protein YP_973169.1 15183 R 365044 CDS YP_973170.1 121582728 4685387 complement(15986..16846) 1 NC_008757.1 PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_C1186 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BphD); alpha/beta hydrolase fold 16846 4685387 Pnap_4141 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold YP_973170.1 15986 R 365044 CDS YP_973171.1 121582729 4685372 complement(16917..17957) 1 NC_008757.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 17957 4685372 Pnap_4142 Polaromonas naphthalenivorans CJ2 4-hydroxy-2-ketovalerate aldolase YP_973171.1 16917 R 365044 CDS YP_973172.1 121582730 4685445 complement(17975..18889) 1 NC_008757.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 18889 4685445 Pnap_4143 Polaromonas naphthalenivorans CJ2 acetaldehyde dehydrogenase YP_973172.1 17975 R 365044 CDS YP_973173.1 121582731 4685416 complement(18910..19692) 1 NC_008757.1 PFAM: Hydratase/decarboxylase; KEGG: bxe:Bxe_C1189 2-hydroxypenta-2,4-dienoate hydratase (BphH); 4-oxalocrotonate decarboxylase 19692 4685416 Pnap_4144 Polaromonas naphthalenivorans CJ2 4-oxalocrotonate decarboxylase YP_973173.1 18910 R 365044 CDS YP_973174.1 121582732 4685347 complement(19780..20391) 1 NC_008757.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_C1190 glutathione S-transferase (BphK); glutathione S-transferase domain-containing protein 20391 4685347 Pnap_4145 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_973174.1 19780 R 365044 CDS YP_973175.1 121582733 4685175 complement(20423..21301) 1 NC_008757.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_C1191 2,3-dihydroxybiphenyl-1,2-dioxygenase (BphC); glyoxalase/bleomycin resistance protein/dioxygenase 21301 4685175 Pnap_4146 Polaromonas naphthalenivorans CJ2 glyoxalase/bleomycin resistance protein/dioxygenase YP_973175.1 20423 R 365044 CDS YP_973176.1 121582734 4685187 complement(21312..22142) 1 NC_008757.1 Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 22142 4685187 Pnap_4147 Polaromonas naphthalenivorans CJ2 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase YP_973176.1 21312 R 365044 CDS YP_973177.1 121582735 4685366 complement(22185..23411) 1 NC_008757.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_C1193 biphenyl 2,3-dioxygenase ferredoxin reductase subunit (BphA4); FAD-dependent pyridine nucleotide-disulphide oxidoreductase 23411 4685366 Pnap_4148 Polaromonas naphthalenivorans CJ2 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_973177.1 22185 R 365044 CDS YP_973178.1 121582736 4685433 complement(23408..23737) 1 NC_008757.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_C1194 biphenyl 2,3-dioxygenase ferredoxin subunit (BphA3); Rieske (2Fe-2S) domain-containing protein 23737 4685433 Pnap_4149 Polaromonas naphthalenivorans CJ2 Rieske (2Fe-2S) domain-containing protein YP_973178.1 23408 R 365044 CDS YP_973179.1 121582737 4685430 complement(23849..24256) 1 NC_008757.1 KEGG: bxe:Bxe_C1195 hypothetical membrane protein, biphenyl pathway; membrane protein, biphenyl pathway 24256 4685430 Pnap_4150 Polaromonas naphthalenivorans CJ2 membrane protein, biphenyl pathway YP_973179.1 23849 R 365044 CDS YP_973180.1 121582738 4685280 complement(24295..24861) 1 NC_008757.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: bxe:Bxe_C1196 biphenyl 2,3-dioxygenase small subunit (BphA2); benzene 1,2-dioxygenase 24861 4685280 Pnap_4151 Polaromonas naphthalenivorans CJ2 benzene 1,2-dioxygenase YP_973180.1 24295 R 365044 CDS YP_973181.1 121582739 4685218 complement(24982..26352) 1 NC_008757.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_C1197 biphenyl 2,3-dioxygenase alpha subunit (BphA1); ring hydroxylating dioxygenase, alpha subunit 26352 4685218 Pnap_4152 Polaromonas naphthalenivorans CJ2 ring hydroxylating dioxygenase, alpha subunit YP_973181.1 24982 R 365044 CDS YP_973182.1 121582740 4685298 complement(26444..27178) 1 NC_008757.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bxe:Bxe_C1198 transcriptional regulator BphR, GntR family; GntR family transcriptional regulator 27178 4685298 Pnap_4153 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_973182.1 26444 R 365044 CDS YP_973183.1 121582741 4685411 complement(27260..27766) 1 NC_008757.1 KEGG: psb:Psyr_2657 hypothetical protein; hypothetical protein 27766 4685411 Pnap_4154 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973183.1 27260 R 365044 CDS YP_973184.1 121582742 4685370 complement(27988..28539) 1 NC_008757.1 hypothetical protein 28539 4685370 Pnap_4155 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973184.1 27988 R 365044 CDS YP_973185.1 121582743 4685439 28650..29477 1 NC_008757.1 PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_1477 protein of unknown function DUF932; hypothetical protein 29477 4685439 Pnap_4156 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973185.1 28650 D 365044 CDS YP_973186.1 121582744 4685467 30595..31101 1 NC_008757.1 PFAM: DNA repair protein RadC; KEGG: rso:RSc2620 hypothetical protein; DNA repair protein RadC 31101 4685467 Pnap_4157 Polaromonas naphthalenivorans CJ2 DNA repair protein RadC YP_973186.1 30595 D 365044 CDS YP_973187.1 121582745 4685365 31719..33758 1 NC_008757.1 PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_1478 ParB-like nuclease; nuclease 33758 4685365 Pnap_4159 Polaromonas naphthalenivorans CJ2 nuclease YP_973187.1 31719 D 365044 CDS YP_973188.1 121582746 4685460 34523..34831 1 NC_008757.1 PFAM: protein of unknown function DUF736; KEGG: rso:RSc2613 hypothetical protein; hypothetical protein 34831 4685460 Pnap_4161 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973188.1 34523 D 365044 CDS YP_973189.1 121582747 4685428 complement(34878..35174) 1 NC_008757.1 PFAM: helix-turn-helix domain protein; KEGG: xac:XAC2176 hypothetical protein; XRE family transcriptional regulator 35174 4685428 Pnap_4162 Polaromonas naphthalenivorans CJ2 XRE family transcriptional regulator YP_973189.1 34878 R 365044 CDS YP_973190.1 121582748 4685429 35617..35967 1 NC_008757.1 KEGG: rso:RSc2609 probable lipoprotein; putative lipoprotein 35967 4685429 Pnap_4163 Polaromonas naphthalenivorans CJ2 putative lipoprotein YP_973190.1 35617 D 365044 CDS YP_973191.1 121582749 4685427 36329..37126 1 NC_008757.1 KEGG: zmo:ZMO1936 hypothetical protein; hypothetical protein 37126 4685427 Pnap_4164 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973191.1 36329 D 365044 CDS YP_973192.1 121582750 4685422 37211..37513 1 NC_008757.1 KEGG: zmo:ZMO1937 hypothetical protein; hypothetical protein 37513 4685422 Pnap_4165 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973192.1 37211 D 365044 CDS YP_973193.1 121582751 4685424 37549..38400 1 NC_008757.1 KEGG: rso:RSc2606 hypothetical replication initiator and transcription repressor protein; putative replication initiator and transcription repressor protein 38400 4685424 Pnap_4166 Polaromonas naphthalenivorans CJ2 putative replication initiator and transcription repressor protein YP_973193.1 37549 D 365044 CDS YP_973194.1 121582752 4685420 38651..39289 1 NC_008757.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_1486 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 39289 4685420 Pnap_4167 Polaromonas naphthalenivorans CJ2 cobyrinic acid a,c-diamide synthase YP_973194.1 38651 D 365044 CDS YP_973195.1 121582753 4685417 39286..39528 1 NC_008757.1 KEGG: rme:Rmet_3022 hypothetical protein; hypothetical protein 39528 4685417 Pnap_4168 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973195.1 39286 D 365044 CDS YP_973196.1 121582754 4685397 39525..40070 1 NC_008757.1 KEGG: rme:Rmet_1257 hypothetical protein; hypothetical protein 40070 4685397 Pnap_4169 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973196.1 39525 D 365044 CDS YP_973197.1 121582755 4685330 40067..40618 1 NC_008757.1 KEGG: rme:Rmet_1488 putative conjugal transfer TRAF transmembrane protein; putative conjugal transfer TRAF transmembrane protein 40618 4685330 Pnap_4170 Polaromonas naphthalenivorans CJ2 putative conjugal transfer TRAF transmembrane protein YP_973197.1 40067 D 365044 CDS YP_973198.1 121582756 4685343 41133..43094 1 NC_008757.1 KEGG: rme:Rmet_1489 hypothetical protein; hypothetical protein 43094 4685343 Pnap_4171 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973198.1 41133 D 365044 CDS YP_973199.1 121582757 4685349 43455..44072 1 NC_008757.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_5551 transcriptional regulator, TetR family; TetR family transcriptional regulator 44072 4685349 Pnap_4172 Polaromonas naphthalenivorans CJ2 TetR family transcriptional regulator YP_973199.1 43455 D 365044 CDS YP_973200.1 121582758 4685354 44142..44729 1 NC_008757.1 PFAM: Late embryogenesis abundant protein; KEGG: pol:Bpro_5552 late embryogenesis abundant protein; late embryogenesis abundant protein 44729 4685354 Pnap_4173 Polaromonas naphthalenivorans CJ2 late embryogenesis abundant protein YP_973200.1 44142 D 365044 CDS YP_973201.1 121582759 4685266 44817..45263 1 NC_008757.1 KEGG: pol:Bpro_5553 hypothetical protein; hypothetical protein 45263 4685266 Pnap_4174 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973201.1 44817 D 365044 CDS YP_973202.1 121582760 4685190 45476..46177 1 NC_008757.1 KEGG: pol:Bpro_5554 hypothetical protein; hypothetical protein 46177 4685190 Pnap_4175 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973202.1 45476 D 365044 CDS YP_973203.1 121582761 4685178 46177..47925 1 NC_008757.1 PFAM: ABC-1 domain protein; KEGG: pol:Bpro_5555 ABC-1; hypothetical protein 47925 4685178 Pnap_4176 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973203.1 46177 D 365044 CDS YP_973204.1 121582762 4685184 47922..50582 1 NC_008757.1 PFAM: Glycosyltransferase 28, C-terminal domain; KEGG: pol:Bpro_5556 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase-like; glycosyltransferase family 28 protein 50582 4685184 Pnap_4177 Polaromonas naphthalenivorans CJ2 glycosyltransferase family 28 protein YP_973204.1 47922 D 365044 CDS YP_973205.1 121582763 4685235 50579..51550 1 NC_008757.1 PFAM: Patatin; KEGG: pol:Bpro_5557 patatin; patatin 51550 4685235 Pnap_4178 Polaromonas naphthalenivorans CJ2 patatin YP_973205.1 50579 D 365044 CDS YP_973206.1 121582764 4685247 51543..52352 1 NC_008757.1 KEGG: pol:Bpro_5558 hypothetical protein; hypothetical protein 52352 4685247 Pnap_4179 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973206.1 51543 D 365044 CDS YP_973207.1 121582765 4685450 52349..53449 1 NC_008757.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_5559 secretion protein HlyD; RND family efflux transporter MFP subunit 53449 4685450 Pnap_4180 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_973207.1 52349 D 365044 CDS YP_973208.1 121582766 4685249 53446..56727 1 NC_008757.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_5560 acriflavin resistance protein; acriflavin resistance protein 56727 4685249 Pnap_4181 Polaromonas naphthalenivorans CJ2 acriflavin resistance protein YP_973208.1 53446 D 365044 CDS YP_973209.1 121582767 4685332 56724..58019 1 NC_008757.1 PFAM: outer membrane efflux protein; KEGG: pol:Bpro_5561 outer membrane efflux protein; outer membrane efflux protein 58019 4685332 Pnap_4182 Polaromonas naphthalenivorans CJ2 outer membrane efflux protein YP_973209.1 56724 D 365044 CDS YP_973210.1 121582768 4685165 complement(58305..59330) 1 NC_008757.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bur:Bcep18194_B1224 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 59330 4685165 Pnap_4184 Polaromonas naphthalenivorans CJ2 helix-turn-helix domain-containing protein YP_973210.1 58305 R 365044 CDS YP_973211.1 121582769 4685245 59556..61814 1 NC_008757.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; fatty acid desaturase; Oxidoreductase FAD-binding domain protein; KEGG: bur:Bcep18194_B1222 fatty acid desaturase; oxidoreductase FAD/NAD(P)-binding subunit 61814 4685245 Pnap_4185 Polaromonas naphthalenivorans CJ2 oxidoreductase FAD/NAD(P)-binding subunit YP_973211.1 59556 D 365044 CDS YP_973212.1 121582770 4685242 61877..63517 1 NC_008757.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: sil:SPO0190 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 63517 4685242 Pnap_4186 Polaromonas naphthalenivorans CJ2 glucose-methanol-choline oxidoreductase YP_973212.1 61877 D 365044 CDS YP_973213.1 121582771 4685240 63521..65158 1 NC_008757.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPO2045 medium-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 65158 4685240 Pnap_4187 Polaromonas naphthalenivorans CJ2 AMP-dependent synthetase and ligase YP_973213.1 63521 D 365044 CDS YP_973214.1 121582772 4685236 65158..66897 1 NC_008757.1 KEGG: ade:Adeh_1143 aldehyde dehydrogenase; aldehyde dehydrogenase 66897 4685236 Pnap_4188 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_973214.1 65158 D 365044 CDS YP_973215.1 121582773 4685233 66988..67698 1 NC_008757.1 PFAM: OmpW family protein; KEGG: pol:Bpro_5480 OmpW; OmpW family protein 67698 4685233 Pnap_4189 Polaromonas naphthalenivorans CJ2 OmpW family protein YP_973215.1 66988 D 365044 CDS YP_973216.1 121582774 4685377 68268..69179 1 NC_008757.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_1336 transcriptional regulator, LysR family; LysR family transcriptional regulator 69179 4685377 Pnap_4191 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_973216.1 68268 D 365044 CDS YP_973217.1 121582775 4685232 69191..69433 1 NC_008757.1 KEGG: bte:BTH_I0809 hypothetical protein; hypothetical protein 69433 4685232 Pnap_4192 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973217.1 69191 D 365044 CDS YP_973218.1 121582776 4685226 69719..71710 1 NC_008757.1 type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG 71710 4685226 Pnap_4193 Polaromonas naphthalenivorans CJ2 conjugal transfer coupling protein TraG YP_973218.1 69719 D 365044 CDS YP_973219.1 121582777 4685225 71707..72159 1 NC_008757.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: rme:Rmet_1549 CopG-like DNA-binding; CopG/DNA-binding domain-containing protein 72159 4685225 Pnap_4194 Polaromonas naphthalenivorans CJ2 CopG/DNA-binding domain-containing protein YP_973219.1 71707 D 365044 CDS YP_973220.1 121582778 4685223 72156..73187 1 NC_008757.1 PFAM: type II secretion system protein E; KEGG: rso:RSc2584 probable conjugal transfer protein TrbB; type II secretion system protein E 73187 4685223 Pnap_4195 Polaromonas naphthalenivorans CJ2 type II secretion system protein E YP_973220.1 72156 D 365044 CDS YP_973221.1 121582779 4685221 73184..73543 1 NC_008757.1 PFAM: Conjugal transfer protein TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC; conjugal transfer protein TrbC 73543 4685221 Pnap_4196 Polaromonas naphthalenivorans CJ2 conjugal transfer protein TrbC YP_973221.1 73184 D 365044 CDS YP_973222.1 121582780 4685220 73540..73824 1 NC_008757.1 KEGG: rme:Rmet_1343 putative conjugal transfer TrbD transmembrane protein; putative conjugal transfer TrbD transmembrane protein 73824 4685220 Pnap_4197 Polaromonas naphthalenivorans CJ2 putative conjugal transfer TrbD transmembrane protein YP_973222.1 73540 D 365044 CDS YP_973223.1 121582781 4685213 73846..76287 1 NC_008757.1 type IV secretion system VirB4 family; conjugal transfer ATPase TrbE 76287 4685213 Pnap_4198 Polaromonas naphthalenivorans CJ2 conjugal transfer ATPase TrbE YP_973223.1 73846 D 365044 CDS YP_973224.1 121582782 4685211 76284..77012 1 NC_008757.1 KEGG: rme:Rmet_1554 putative conjugal transfer TrbJ signal peptide protein; conjugal transfer protein TrbJ 77012 4685211 Pnap_4199 Polaromonas naphthalenivorans CJ2 conjugal transfer protein TrbJ YP_973224.1 76284 D 365044 CDS YP_973225.1 121582783 4685205 77023..78396 1 NC_008757.1 type IV secretion VirB6 family; conjugal transfer protein TrbL 78396 4685205 Pnap_4200 Polaromonas naphthalenivorans CJ2 conjugal transfer protein TrbL YP_973225.1 77023 D 365044 CDS YP_973226.1 121582784 4685207 78409..79113 1 NC_008757.1 PFAM: Conjugal transfer protein; KEGG: rme:Rmet_1348 conjugal transfer protein; conjugal transfer protein TrbF 79113 4685207 Pnap_4201 Polaromonas naphthalenivorans CJ2 conjugal transfer protein TrbF YP_973226.1 78409 D 365044 CDS YP_973227.1 121582785 4685199 79110..80123 1 NC_008757.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rso:RSc2576 probable conjugal transfer lipoprotein TrbG; conjugal transfer protein TrbG/VirB9/CagX 80123 4685199 Pnap_4202 Polaromonas naphthalenivorans CJ2 conjugal transfer protein TrbG/VirB9/CagX YP_973227.1 79110 D 365044 CDS YP_973228.1 121582786 4685195 80126..81445 1 NC_008757.1 PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_1559 conjugation TrbI-like protein; conjugation TrbI family protein 81445 4685195 Pnap_4203 Polaromonas naphthalenivorans CJ2 conjugation TrbI family protein YP_973228.1 80126 D 365044 CDS YP_973229.1 121582787 4685193 81442..81711 1 NC_008757.1 KEGG: rso:RSc2574 hypothetical/unknown protein; hypothetical protein 81711 4685193 Pnap_4204 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973229.1 81442 D 365044 CDS YP_973230.1 121582788 4685192 complement(82262..82612) 1 NC_008757.1 PFAM: protein of unknown function DUF805; KEGG: chu:CHU_1014 possible cytochrome; hypothetical protein 82612 4685192 Pnap_4205 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973230.1 82262 R 365044 CDS YP_973231.1 121582789 4685188 complement(82654..83067) 1 NC_008757.1 hypothetical protein 83067 4685188 Pnap_4206 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973231.1 82654 R 365044 CDS YP_973232.1 121582790 4685189 complement(83134..83589) 1 NC_008757.1 hypothetical protein 83589 4685189 Pnap_4207 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973232.1 83134 R 365044 CDS YP_973233.1 121582791 4685182 complement(83904..84173) 1 NC_008757.1 hypothetical protein 84173 4685182 Pnap_4208 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973233.1 83904 R 365044 CDS YP_973234.1 121582792 4685181 85400..85678 1 NC_008757.1 hypothetical protein 85678 4685181 Pnap_4209 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973234.1 85400 D 365044 CDS YP_973235.1 121582793 4685177 85689..85958 1 NC_008757.1 KEGG: rfr:Rfer_4310 hypothetical protein; hypothetical protein 85958 4685177 Pnap_4210 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973235.1 85689 D 365044 CDS YP_973236.1 121582794 4685171 86109..86990 1 NC_008757.1 hypothetical protein 86990 4685171 Pnap_4211 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973236.1 86109 D 365044 CDS YP_973237.1 121582795 4685173 87439..87819 1 NC_008757.1 hypothetical protein 87819 4685173 Pnap_4212 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973237.1 87439 D 365044 CDS YP_973238.1 121582796 4685169 87892..88443 1 NC_008757.1 hypothetical protein 88443 4685169 Pnap_4213 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973238.1 87892 D 365044 CDS YP_973239.1 121582797 4685300 88638..89492 1 NC_008757.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pol:Bpro_5428 hypothetical protein; phosphoadenosine phosphosulfate reductase 89492 4685300 Pnap_4214 Polaromonas naphthalenivorans CJ2 phosphoadenosine phosphosulfate reductase YP_973239.1 88638 D 365044 CDS YP_973240.1 121582798 4685271 90124..91254 1 NC_008757.1 hypothetical protein 91254 4685271 Pnap_4215 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973240.1 90124 D 365044 CDS YP_973241.1 121582799 4685268 91321..91683 1 NC_008757.1 hypothetical protein 91683 4685268 Pnap_4216 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973241.1 91321 D 365044 CDS YP_973242.1 121582800 4685267 91757..92275 1 NC_008757.1 hypothetical protein 92275 4685267 Pnap_4217 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973242.1 91757 D 365044 CDS YP_973243.1 121582801 4685264 92352..92660 1 NC_008757.1 hypothetical protein 92660 4685264 Pnap_4218 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973243.1 92352 D 365044 CDS YP_973244.1 121582802 4685263 92721..93107 1 NC_008757.1 hypothetical protein 93107 4685263 Pnap_4219 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973244.1 92721 D 365044 CDS YP_973245.1 121582803 4685261 93235..93642 1 NC_008757.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: bpm:BURPS1710b_0084 H-NS histone family protein; histone family protein nucleoid-structuring protein H-NS 93642 4685261 Pnap_4220 Polaromonas naphthalenivorans CJ2 histone family protein nucleoid-structuring protein H-NS YP_973245.1 93235 D 365044 CDS YP_973246.1 121582804 4685256 94256..94705 1 NC_008757.1 KEGG: rme:Rmet_1504 hypothetical protein; hypothetical protein 94705 4685256 Pnap_4221 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973246.1 94256 D 365044 CDS YP_973247.1 121582805 4685254 complement(94730..95140) 1 NC_008757.1 hypothetical protein 95140 4685254 Pnap_4222 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973247.1 94730 R 365044 CDS YP_973248.1 121582806 4685290 complement(95172..95870) 1 NC_008757.1 hypothetical protein 95870 4685290 Pnap_4223 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973248.1 95172 R 365044 CDS YP_973249.1 121582807 4685285 96004..96990 1 NC_008757.1 PFAM: type II secretion system protein E; KEGG: rme:Rmet_6302 type II secretion system protein E; type II secretion system protein E 96990 4685285 Pnap_4224 Polaromonas naphthalenivorans CJ2 type II secretion system protein E YP_973249.1 96004 D 365044 CDS YP_973250.1 121582808 4685251 96962..97282 1 NC_008757.1 hypothetical protein 97282 4685251 Pnap_4225 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973250.1 96962 D 365044 CDS YP_973251.1 121582809 4685333 97293..97607 1 NC_008757.1 hypothetical protein 97607 4685333 Pnap_4226 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973251.1 97293 D 365044 CDS YP_973252.1 121582810 4685293 97607..100072 1 NC_008757.1 KEGG: pol:Bpro_5229 type IV secretory pathway VirB4 components-like; Type IV secretory pathway VirB4 components-like protein 100072 4685293 Pnap_4227 Polaromonas naphthalenivorans CJ2 Type IV secretory pathway VirB4 components-like protein YP_973252.1 97607 D 365044 CDS YP_973253.1 121582811 4685276 100075..100788 1 NC_008757.1 KEGG: mlo:mll9607 conjugal transfer protein trbJ; hypothetical protein 100788 4685276 Pnap_4228 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973253.1 100075 D 365044 CDS YP_973254.1 121582812 4685283 100795..102018 1 NC_008757.1 KEGG: rme:Rmet_6307 hypothetical protein; hypothetical protein 102018 4685283 Pnap_4229 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973254.1 100795 D 365044 CDS YP_973255.1 121582813 4685327 102231..102842 1 NC_008757.1 hypothetical protein 102842 4685327 Pnap_4230 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973255.1 102231 D 365044 CDS YP_973256.1 121582814 4685274 102875..103348 1 NC_008757.1 KEGG: bbr:BB3199 putative lipoprotein; putative lipoprotein 103348 4685274 Pnap_4231 Polaromonas naphthalenivorans CJ2 putative lipoprotein YP_973256.1 102875 D 365044 CDS YP_973257.1 121582815 4685455 103411..105033 1 NC_008757.1 KEGG: bbr:BB3198 lipoprotein; lipoprotein 105033 4685455 Pnap_4232 Polaromonas naphthalenivorans CJ2 lipoprotein YP_973257.1 103411 D 365044 CDS YP_973258.1 121582816 4685322 105034..106392 1 NC_008757.1 KEGG: bpe:BP1830 hypothetical protein; hypothetical protein 106392 4685322 Pnap_4233 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973258.1 105034 D 365044 CDS YP_973259.1 121582817 4685277 106379..107233 1 NC_008757.1 KEGG: tcr:510377.134 mucin-associated surface protein (MASP) Pfam: Prosystemin PROSITE: ALA_RICH; hypothetical protein 107233 4685277 Pnap_4234 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973259.1 106379 D 365044 CDS YP_973260.1 121582818 4685282 107238..109205 1 NC_008757.1 PFAM: type II secretion system protein E; KEGG: bbr:BB3195 putative general secretion pathway protein; type II secretion system protein E 109205 4685282 Pnap_4235 Polaromonas naphthalenivorans CJ2 type II secretion system protein E YP_973260.1 107238 D 365044 CDS YP_973261.1 121582819 4685288 109205..110419 1 NC_008757.1 KEGG: bpe:BP1833 putative general secretion pathway protein; putative general secretion pathway protein 110419 4685288 Pnap_4236 Polaromonas naphthalenivorans CJ2 putative general secretion pathway protein YP_973261.1 109205 D 365044 CDS YP_973262.1 121582820 4685286 110651..111295 1 NC_008757.1 KEGG: pol:Bpro_5457 type IV secretory pathway component VirB8-like; hypothetical protein 111295 4685286 Pnap_4237 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973262.1 110651 D 365044 CDS YP_973263.1 121582821 4685334 111292..112134 1 NC_008757.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rbe:RBE_1012 VirB9; conjugal transfer protein TrbG/VirB9/CagX 112134 4685334 Pnap_4238 Polaromonas naphthalenivorans CJ2 conjugal transfer protein TrbG/VirB9/CagX YP_973263.1 111292 D 365044 CDS YP_973264.1 121582822 4685337 112141..113439 1 NC_008757.1 PFAM: conjugation TrbI family protein; KEGG: pol:Bpro_5455 conjugation TrbI-like protein; conjugation TrbI family protein 113439 4685337 Pnap_4239 Polaromonas naphthalenivorans CJ2 conjugation TrbI family protein YP_973264.1 112141 D 365044 CDS YP_973265.1 121582823 4685331 113436..113771 1 NC_008757.1 hypothetical protein 113771 4685331 Pnap_4240 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973265.1 113436 D 365044 CDS YP_973266.1 121582824 4685346 complement(113838..115505) 1 NC_008757.1 KEGG: rme:Rmet_6048 superfamily I DNA and RNA helicases-like protein; superfamily I DNA/RNA helicase-like protein 115505 4685346 Pnap_4241 Polaromonas naphthalenivorans CJ2 superfamily I DNA/RNA helicase-like protein YP_973266.1 113838 R 365044 CDS YP_973267.1 121582825 4685345 complement(115527..115958) 1 NC_008757.1 hypothetical protein 115958 4685345 Pnap_4242 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973267.1 115527 R 365044 CDS YP_973268.1 121582826 4685344 116229..116765 1 NC_008757.1 PFAM: Lytic transglycosylase, catalytic; KEGG: bcn:Bcen_0007 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic 116765 4685344 Pnap_4243 Polaromonas naphthalenivorans CJ2 lytic transglycosylase, catalytic YP_973268.1 116229 D 365044 CDS YP_973269.1 121582827 4685351 complement(117029..118330) 1 NC_008757.1 PFAM: initiator RepB protein; KEGG: pol:Bpro_5513 initiator RepB protein; initiator RepB protein 118330 4685351 Pnap_4244 Polaromonas naphthalenivorans CJ2 initiator RepB protein YP_973269.1 117029 R 365044 CDS YP_973270.1 121582828 4685394 complement(118850..119311) 1 NC_008757.1 hypothetical protein 119311 4685394 Pnap_4245 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973270.1 118850 R 365044 CDS YP_973271.1 121582829 4685376 120157..120969 1 NC_008757.1 KEGG: bxe:Bxe_C0019 putative transposase; hypothetical protein 120969 4685376 Pnap_4246 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973271.1 120157 D 365044 CDS YP_973272.1 121582830 4685265 complement(121145..122119) 1 NC_008757.1 TIGRFAM: parB-like partition proteins; KEGG: pol:Bpro_5044 ParB-like partition proteins; parB-like partition proteins 122119 4685265 Pnap_4247 Polaromonas naphthalenivorans CJ2 parB-like partition proteins YP_973272.1 121145 R 365044 CDS YP_973273.1 121582831 4685259 complement(122119..122787) 1 NC_008757.1 KEGG: rfr:Rfer_4285 ATPase involved in chromosome partitioning-like; chromosome partitioning ATPase 122787 4685259 Pnap_4248 Polaromonas naphthalenivorans CJ2 chromosome partitioning ATPase YP_973273.1 122119 R 365044 CDS YP_973274.1 121582832 4685269 complement(123239..123628) 1 NC_008757.1 PFAM: transposase, IS4 family protein; KEGG: ftl:FTL_1926 transposase; transposase, IS4 family protein 123628 4685269 Pnap_4249 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_973274.1 123239 R 365044 CDS YP_973275.1 121582833 4685253 complement(123668..123868) 1 NC_008757.1 KEGG: sco:SCP1.214 putative transposase; putative transposase 123868 4685253 Pnap_4250 Polaromonas naphthalenivorans CJ2 putative transposase YP_973275.1 123668 R 365044 CDS YP_973276.1 121582834 4685307 complement(124072..125946) 1 NC_008757.1 PFAM: phage integrase family protein; KEGG: rso:RS01673 putative integrase/recombinase protein; phage integrase family protein 125946 4685307 Pnap_4251 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_973276.1 124072 R 365044 CDS YP_973277.1 121582835 4685168 complement(126243..126839) 1 NC_008757.1 KEGG: rfr:Rfer_4437 hypothetical protein; hypothetical protein 126839 4685168 Pnap_4252 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973277.1 126243 R 365044 CDS YP_973278.1 121582836 4685172 126975..128513 1 NC_008757.1 PFAM: sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_05030 sigma 54-dependent transcriptional activator; sigma-54 factor interaction domain-containing protein 128513 4685172 Pnap_4253 Polaromonas naphthalenivorans CJ2 sigma-54 factor interaction domain-containing protein YP_973278.1 126975 D 365044 CDS YP_973279.1 121582837 4685294 128725..129060 1 NC_008757.1 hypothetical protein 129060 4685294 Pnap_4254 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973279.1 128725 D 365044 CDS YP_973280.1 121582838 4685179 129168..129890 1 NC_008757.1 PFAM: von Willebrand factor, type A; KEGG: hpy:HP0428 phage/colicin/tellurite resistance cluster TerY protein; von Willebrand factor, type A 129890 4685179 Pnap_4255 Polaromonas naphthalenivorans CJ2 von Willebrand factor, type A YP_973280.1 129168 D 365044 CDS YP_973281.1 121582839 4685183 130056..130607 1 NC_008757.1 hypothetical protein 130607 4685183 Pnap_4256 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973281.1 130056 D 365044 CDS YP_973282.1 121582840 4685180 130614..132041 1 NC_008757.1 PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: hpy:HP0432 protein kinase C-like protein; protein kinase 132041 4685180 Pnap_4257 Polaromonas naphthalenivorans CJ2 protein kinase YP_973282.1 130614 D 365044 CDS YP_973283.1 121582841 4685186 132049..135375 1 NC_008757.1 KEGG: hpy:HP0447 hypothetical protein; superfamily I DNA/RNA helicase 135375 4685186 Pnap_4258 Polaromonas naphthalenivorans CJ2 superfamily I DNA/RNA helicase YP_973283.1 132049 D 365044 CDS YP_973284.1 121582842 4685194 135362..136801 1 NC_008757.1 hypothetical protein 136801 4685194 Pnap_4259 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973284.1 135362 D 365044 CDS YP_973285.1 121582843 4685191 136931..139267 1 NC_008757.1 KEGG: bat:BAS0873 hypothetical protein; hypothetical protein 139267 4685191 Pnap_4260 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973285.1 136931 D 365044 CDS YP_973286.1 121582844 4685197 139264..141159 1 NC_008757.1 hypothetical protein 141159 4685197 Pnap_4261 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973286.1 139264 D 365044 CDS YP_973287.1 121582845 4685202 complement(141166..143667) 1 NC_008757.1 hypothetical protein 143667 4685202 Pnap_4262 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973287.1 141166 R 365044 CDS YP_973288.1 121582846 4685201 complement(143664..145226) 1 NC_008757.1 hypothetical protein 145226 4685201 Pnap_4263 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973288.1 143664 R 365044 CDS YP_973289.1 121582847 4685210 complement(145574..149353) 1 NC_008757.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pcr:Pcryo_0956 SNF2-related; SNF2-related protein 149353 4685210 Pnap_4264 Polaromonas naphthalenivorans CJ2 SNF2-related protein YP_973289.1 145574 R 365044 CDS YP_973290.1 121582848 4685216 complement(149350..151158) 1 NC_008757.1 KEGG: pcr:Pcryo_0955 hypothetical protein; hypothetical protein 151158 4685216 Pnap_4265 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973290.1 149350 R 365044 CDS YP_973291.1 121582849 4685215 complement(151158..151865) 1 NC_008757.1 KEGG: pcr:Pcryo_0954 hypothetical protein; hypothetical protein 151865 4685215 Pnap_4266 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973291.1 151158 R 365044 CDS YP_973292.1 121582850 4685219 complement(151862..154312) 1 NC_008757.1 KEGG: xcb:XC_2788 hypothetical protein; hypothetical protein 154312 4685219 Pnap_4267 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973292.1 151862 R 365044 CDS YP_973293.1 121582851 4685224 complement(155091..156239) 1 NC_008757.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: rfr:Rfer_4341 DNA-directed DNA polymerase; DNA-repair protein 156239 4685224 Pnap_4268 Polaromonas naphthalenivorans CJ2 DNA-repair protein YP_973293.1 155091 R 365044 CDS YP_973294.1 121582852 4685222 complement(156791..158065) 1 NC_008757.1 hypothetical protein 158065 4685222 Pnap_4269 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973294.1 156791 R 365044 CDS YP_973295.1 121582853 4685228 158334..158705 1 NC_008757.1 KEGG: noc:Noc_0666 hypothetical protein; hypothetical protein 158705 4685228 Pnap_4270 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973295.1 158334 D 365044 CDS YP_973296.1 121582854 4685231 158708..161203 1 NC_008757.1 PFAM: Heat shock protein 70; KEGG: noc:Noc_0667 heat shock protein HSP70; heat shock protein 70 161203 4685231 Pnap_4271 Polaromonas naphthalenivorans CJ2 heat shock protein 70 YP_973296.1 158708 D 365044 CDS YP_973297.1 121582855 4685227 161207..162655 1 NC_008757.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: noc:Noc_0668 AAA ATPase; ATPase central domain-containing protein 162655 4685227 Pnap_4272 Polaromonas naphthalenivorans CJ2 ATPase central domain-containing protein YP_973297.1 161207 D 365044 CDS YP_973298.1 121582856 4685237 162714..164369 1 NC_008757.1 KEGG: noc:Noc_0670 hypothetical protein; hypothetical protein 164369 4685237 Pnap_4273 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973298.1 162714 D 365044 CDS YP_973299.1 121582857 4685355 complement(166679..168343) 1 NC_008757.1 PFAM: UvrD/REP helicase; KEGG: dar:Daro_2560 UvrD/REP helicase; UvrD/REP helicase 168343 4685355 Pnap_4275 Polaromonas naphthalenivorans CJ2 UvrD/REP helicase YP_973299.1 166679 R 365044 CDS YP_973300.1 121582858 4685238 complement(168340..170277) 1 NC_008757.1 PFAM: SMC domain protein; KEGG: dar:Daro_2559 hypothetical protein; Fis family transcriptional regulator 170277 4685238 Pnap_4276 Polaromonas naphthalenivorans CJ2 Fis family transcriptional regulator YP_973300.1 168340 R 365044 CDS YP_973301.1 121582859 4685243 complement(170793..172820) 1 NC_008757.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO6640 putative ATP-dependent helicase; DEAD/DEAH box helicase domain-containing protein 172820 4685243 Pnap_4277 Polaromonas naphthalenivorans CJ2 DEAD/DEAH box helicase domain-containing protein YP_973301.1 170793 R 365044 CDS YP_973302.1 121582860 4685248 complement(172817..174127) 1 NC_008757.1 KEGG: hch:HCH_03464 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 174127 4685248 Pnap_4278 Polaromonas naphthalenivorans CJ2 methyl-accepting chemotaxis protein YP_973302.1 172817 R 365044 CDS YP_973303.1 121582861 4685246 complement(174124..176850) 1 NC_008757.1 PFAM: PglZ domain; KEGG: hch:HCH_03465 hypothetical protein; alkaline phosphatase domain-containing protein 176850 4685246 Pnap_4279 Polaromonas naphthalenivorans CJ2 alkaline phosphatase domain-containing protein YP_973303.1 174124 R 365044 CDS YP_973304.1 121582862 4685167 complement(176847..180569) 1 NC_008757.1 KEGG: hch:HCH_03466 probable phage resistance protein; putative phage resistance protein 180569 4685167 Pnap_4280 Polaromonas naphthalenivorans CJ2 putative phage resistance protein YP_973304.1 176847 R 365044 CDS YP_973305.1 121582863 4685230 complement(180693..181241) 1 NC_008757.1 hypothetical protein 181241 4685230 Pnap_4281 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973305.1 180693 R 365044 CDS YP_973306.1 121582864 4685273 complement(181245..182312) 1 NC_008757.1 KEGG: nma:NMA0935 hypothetical protein; hypothetical protein 182312 4685273 Pnap_4282 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973306.1 181245 R 365044 CDS YP_973307.1 121582865 4685203 complement(182344..186045) 1 NC_008757.1 KEGG: bte:BTH_I0114 hypothetical protein; hypothetical protein 186045 4685203 Pnap_4283 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973307.1 182344 R 365044 CDS YP_973308.1 121582866 4685275 complement(186128..187297) 1 NC_008757.1 KEGG: rme:Rmet_2228 hypothetical protein; hypothetical protein 187297 4685275 Pnap_4284 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973308.1 186128 R 365044 CDS YP_973309.1 121582867 4685214 complement(187488..191771) 1 NC_008757.1 PFAM: protein kinase; NERD domain protein; SMART: serine/threonine protein kinase; KEGG: hch:HCH_03471 serine/threonine protein kinase; protein kinase 191771 4685214 Pnap_4285 Polaromonas naphthalenivorans CJ2 protein kinase YP_973309.1 187488 R 365044 CDS YP_973310.1 121582868 4685399 complement(191768..191989) 1 NC_008757.1 KEGG: pol:Bpro_0373 transcriptional regulator, Cro/CI family; Cro/CI family transcriptional regulator 191989 4685399 Pnap_4286 Polaromonas naphthalenivorans CJ2 Cro/CI family transcriptional regulator YP_973310.1 191768 R 365044 CDS YP_973311.1 121582869 4685279 192190..192414 1 NC_008757.1 KEGG: mhu:Mhun_2961 protein of unknown function DUF262; hypothetical protein 192414 4685279 Pnap_4287 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973311.1 192190 D 365044 CDS YP_973312.1 121582870 4685255 193002..193505 1 NC_008757.1 hypothetical protein 193505 4685255 Pnap_4288 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973312.1 193002 D 365044 CDS YP_973313.1 121582871 4685352 complement(193643..194374) 1 NC_008757.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; IstB ATP binding domain-containing protein 194374 4685352 Pnap_4289 Polaromonas naphthalenivorans CJ2 IstB ATP binding domain-containing protein YP_973313.1 193643 R 365044 CDS YP_973314.1 121582872 4685403 complement(194416..195954) 1 NC_008757.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit 195954 4685403 Pnap_4290 Polaromonas naphthalenivorans CJ2 integrase catalytic subunit YP_973314.1 194416 R 365044 CDS YP_973315.1 121582873 4685335 196635..197126 1 NC_008757.1 KEGG: ppu:PP_3916 hypothetical protein; hypothetical protein 197126 4685335 Pnap_4291 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973315.1 196635 D 365044 CDS YP_973316.1 121582874 4685421 197439..197918 1 NC_008757.1 hypothetical protein 197918 4685421 Pnap_4292 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973316.1 197439 D 365044 CDS YP_973317.1 121582875 4685426 198155..199906 1 NC_008757.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: pol:Bpro_5053 ParB-like partition proteins; parB-like partition proteins 199906 4685426 Pnap_4293 Polaromonas naphthalenivorans CJ2 parB-like partition proteins YP_973317.1 198155 D 365044 CDS YP_973318.1 121582876 4685419 200560..200769 1 NC_008757.1 KEGG: rso:RSc1661 hypothetical protein; hypothetical protein 200769 4685419 Pnap_4294 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973318.1 200560 D 365044 CDS YP_973319.1 121582877 4685458 200886..202046 1 NC_008757.1 KEGG: pol:Bpro_5065 hypothetical protein; hypothetical protein 202046 4685458 Pnap_4295 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973319.1 200886 D 365044 CDS YP_973320.1 121582878 4685477 202049..202846 1 NC_008757.1 KEGG: pol:Bpro_5066 hypothetical protein; hypothetical protein 202846 4685477 Pnap_4296 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973320.1 202049 D 365044 CDS YP_973321.1 121582879 4685432 202846..203490 1 NC_008757.1 KEGG: pol:Bpro_5067 hypothetical protein; hypothetical protein 203490 4685432 Pnap_4297 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973321.1 202846 D 365044 CDS YP_973322.1 121582880 4685206 203487..204332 1 NC_008757.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pol:Bpro_5068 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein 204332 4685206 Pnap_4298 Polaromonas naphthalenivorans CJ2 UBA/THIF-type NAD/FAD binding protein YP_973322.1 203487 D 365044 CDS YP_973323.1 121582881 4685270 204426..204968 1 NC_008757.1 hypothetical protein 204968 4685270 Pnap_4299 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973323.1 204426 D 365044 CDS YP_973324.1 121582882 4685404 complement(205475..205810) 1 NC_008757.1 hypothetical protein 205810 4685404 Pnap_4300 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973324.1 205475 R 365044 CDS YP_973325.1 121582883 4685229 206036..210985 1 NC_008757.1 KEGG: dar:Daro_2546 helicase, C-terminal; helicase, C-terminal 210985 4685229 Pnap_4301 Polaromonas naphthalenivorans CJ2 helicase, C-terminal YP_973325.1 206036 D 365044 CDS YP_973326.1 121582884 4685185 211149..211691 1 NC_008757.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: xcv:XCVd0044 putative secreted protein; hypothetical protein 211691 4685185 Pnap_4302 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973326.1 211149 D 365044 CDS YP_973327.1 121582885 4685390 212201..212485 1 NC_008757.1 hypothetical protein 212485 4685390 Pnap_4303 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973327.1 212201 D 365044 CDS YP_973328.1 121582886 4685318 212963..213877 1 NC_008757.1 KEGG: dar:Daro_1656 hypothetical protein; hypothetical protein 213877 4685318 Pnap_4304 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973328.1 212963 D 365044 CDS YP_973329.1 121582887 4685465 213989..215089 1 NC_008757.1 TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; KEGG: pha:PSHAa0002 DNA polymerase III subunit beta; DNA polymerase III, beta subunit 215089 4685465 Pnap_4305 Polaromonas naphthalenivorans CJ2 DNA polymerase III, beta subunit YP_973329.1 213989 D 365044 CDS YP_973330.1 121582888 4685391 215133..215753 1 NC_008757.1 hypothetical protein 215753 4685391 Pnap_4306 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973330.1 215133 D 365044 CDS YP_973331.1 121582889 4685262 216027..217454 1 NC_008757.1 KEGG: dar:Daro_2562 hypothetical protein; hypothetical protein 217454 4685262 Pnap_4307 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973331.1 216027 D 365044 CDS YP_973332.1 121582890 4685308 217746..218144 1 NC_008757.1 PFAM: protein of unknown function DUF1044; KEGG: pol:Bpro_0470 protein of unknown function DUF1044; hypothetical protein 218144 4685308 Pnap_4308 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973332.1 217746 D 365044 CDS YP_973333.1 121582891 4685371 218164..218451 1 NC_008757.1 KEGG: pol:Bpro_0471 putative transcriptional regulator; putative transcriptional regulator 218451 4685371 Pnap_4309 Polaromonas naphthalenivorans CJ2 putative transcriptional regulator YP_973333.1 218164 D 365044 CDS YP_973334.1 121582892 4685405 218632..219051 1 NC_008757.1 hypothetical protein 219051 4685405 Pnap_4310 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973334.1 218632 D 365044 CDS YP_973335.1 121582893 4685311 complement(219542..220165) 1 NC_008757.1 KEGG: tcr:510243.50 adenylate kinase; hypothetical protein 220165 4685311 Pnap_4311 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973335.1 219542 R 365044 CDS YP_973336.1 121582894 4685457 complement(220172..220465) 1 NC_008757.1 hypothetical protein 220465 4685457 Pnap_4312 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973336.1 220172 R 365044 CDS YP_973337.1 121582895 4685328 complement(220721..221350) 1 NC_008757.1 hypothetical protein 221350 4685328 Pnap_4313 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973337.1 220721 R 365044 CDS YP_973338.1 121582896 4685319 221663..222580 1 NC_008757.1 hypothetical protein 222580 4685319 Pnap_4314 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973338.1 221663 D 365044 CDS YP_973339.1 121582897 4685336 222675..224534 1 NC_008757.1 PFAM: UvrD/REP helicase; KEGG: rme:Rmet_6314 UvrD/REP helicase; UvrD/REP helicase 224534 4685336 Pnap_4315 Polaromonas naphthalenivorans CJ2 UvrD/REP helicase YP_973339.1 222675 D 365044 CDS YP_973340.1 121582898 4685314 complement(224590..225126) 1 NC_008757.1 hypothetical protein 225126 4685314 Pnap_4316 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973340.1 224590 R 365044 CDS YP_973341.1 121582899 4685341 226289..227317 1 NC_008757.1 KEGG: eba:p1B250 hypothetical protein; hypothetical protein 227317 4685341 Pnap_4317 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973341.1 226289 D 365044 CDS YP_973342.1 121582900 4685312 227441..228844 1 NC_008757.1 KEGG: dar:Daro_2561 DNA repair exonuclease-like protein; DNA repair exonuclease-like protein 228844 4685312 Pnap_4318 Polaromonas naphthalenivorans CJ2 DNA repair exonuclease-like protein YP_973342.1 227441 D 365044 CDS YP_973343.1 121582901 4685323 complement(229164..229517) 1 NC_008757.1 hypothetical protein 229517 4685323 Pnap_4319 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973343.1 229164 R 365044 CDS YP_973344.1 121582902 4685363 229820..232252 1 NC_008757.1 KEGG: dar:Daro_2237 putative ATPase involved in DNA repair; putative DNA repair ATPase 232252 4685363 Pnap_4320 Polaromonas naphthalenivorans CJ2 putative DNA repair ATPase YP_973344.1 229820 D 365044 CDS YP_973345.1 121582903 4685316 232375..232953 1 NC_008757.1 hypothetical protein 232953 4685316 Pnap_4321 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973345.1 232375 D 365044 CDS YP_973346.1 121582904 4685350 233190..234113 1 NC_008757.1 hypothetical protein 234113 4685350 Pnap_4322 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973346.1 233190 D 365044 CDS YP_973347.1 121582905 4685380 234180..234824 1 NC_008757.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pol:Bpro_4565 single-strand binding protein; single-strand binding protein 234824 4685380 Pnap_4323 Polaromonas naphthalenivorans CJ2 single-strand binding protein YP_973347.1 234180 D 365044 CDS YP_973348.1 121582906 4685353 235004..236029 1 NC_008757.1 KEGG: dar:Daro_2291 hypothetical protein; hypothetical protein 236029 4685353 Pnap_4324 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973348.1 235004 D 365044 CDS YP_973349.1 121582907 4685367 complement(236173..236547) 1 NC_008757.1 hypothetical protein 236547 4685367 Pnap_4325 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973349.1 236173 R 365044 CDS YP_973350.1 121582908 4685398 complement(236732..237274) 1 NC_008757.1 hypothetical protein 237274 4685398 Pnap_4326 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973350.1 236732 R 365044 CDS YP_973351.1 121582909 4685360 complement(237271..237645) 1 NC_008757.1 hypothetical protein 237645 4685360 Pnap_4327 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973351.1 237271 R 365044 CDS YP_973352.1 121582910 4685393 complement(237678..238712) 1 NC_008757.1 hypothetical protein 238712 4685393 Pnap_4328 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973352.1 237678 R 365044 CDS YP_973353.1 121582911 4685301 238888..240114 1 NC_008757.1 hypothetical protein 240114 4685301 Pnap_4329 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973353.1 238888 D 365044 CDS YP_973354.1 121582912 4685382 240107..242020 1 NC_008757.1 KEGG: rme:Rmet_6309 hypothetical protein; hypothetical protein 242020 4685382 Pnap_4330 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973354.1 240107 D 365044 CDS YP_973355.1 121582913 4685400 242315..243709 1 NC_008757.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5481 HNH endonuclease; HNH endonuclease 243709 4685400 Pnap_4331 Polaromonas naphthalenivorans CJ2 HNH endonuclease YP_973355.1 242315 D 365044 CDS YP_973356.1 121582914 4685441 243709..244344 1 NC_008757.1 KEGG: rme:Rmet_6312 hypothetical protein; hypothetical protein 244344 4685441 Pnap_4332 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973356.1 243709 D 365044 CDS YP_973357.1 121582915 4685388 244510..245103 1 NC_008757.1 KEGG: bbr:BB3193 putative fimbrial protein; putative fimbrial protein 245103 4685388 Pnap_4333 Polaromonas naphthalenivorans CJ2 putative fimbrial protein YP_973357.1 244510 D 365044 CDS YP_973358.1 121582916 4685431 245524..246882 1 NC_008757.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5402 HNH endonuclease; HNH endonuclease 246882 4685431 Pnap_4334 Polaromonas naphthalenivorans CJ2 HNH endonuclease YP_973358.1 245524 D 365044 CDS YP_973359.1 121582917 4685461 247082..248665 1 NC_008757.1 KEGG: rfr:Rfer_4492 methylation; hypothetical protein 248665 4685461 Pnap_4335 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973359.1 247082 D 365044 CDS YP_973360.1 121582918 4685412 complement(248837..249895) 1 NC_008757.1 PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related; Allergen V5/Tpx-1 family protein 249895 4685412 Pnap_4336 Polaromonas naphthalenivorans CJ2 Allergen V5/Tpx-1 family protein YP_973360.1 248837 R 365044 CDS YP_973361.1 121582919 4685443 250087..250824 1 NC_008757.1 hypothetical protein 250824 4685443 Pnap_4337 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973361.1 250087 D 365044 CDS YP_973362.1 121582920 4685472 complement(250999..252381) 1 NC_008757.1 PFAM: HipA domain protein; KEGG: bpa:BPP0645 hypothetical protein; HipA domain-containing protein 252381 4685472 Pnap_4338 Polaromonas naphthalenivorans CJ2 HipA domain-containing protein YP_973362.1 250999 R 365044 CDS YP_973363.1 121582921 4685435 complement(252381..252665) 1 NC_008757.1 KEGG: rfr:Rfer_3066 transcriptional regulator, XRE family; XRE family transcriptional regulator 252665 4685435 Pnap_4339 Polaromonas naphthalenivorans CJ2 XRE family transcriptional regulator YP_973363.1 252381 R 365044 CDS YP_973364.1 121582922 4685463 253051..254166 1 NC_008757.1 KEGG: reu:Reut_C6002 hypothetical protein; hypothetical protein 254166 4685463 Pnap_4340 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973364.1 253051 D 365044 CDS YP_973365.1 121582923 4685436 complement(254244..255059) 1 NC_008757.1 KEGG: cne:CNE03390 hypothetical protein; hypothetical protein 255059 4685436 Pnap_4341 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973365.1 254244 R 365044 CDS YP_973366.1 121582924 4685446 complement(255063..255548) 1 NC_008757.1 hypothetical protein 255548 4685446 Pnap_4342 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973366.1 255063 R 365044 CDS YP_973367.1 121582925 4685470 complement(255658..256005) 1 NC_008757.1 hypothetical protein 256005 4685470 Pnap_4343 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973367.1 255658 R 365044 CDS YP_973368.1 121582926 4685381 complement(256010..256258) 1 NC_008757.1 hypothetical protein 256258 4685381 Pnap_4344 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973368.1 256010 R 365044 CDS YP_973369.1 121582927 4685464 complement(256402..257448) 1 NC_008757.1 KEGG: dar:Daro_2217 hypothetical protein; hypothetical protein 257448 4685464 Pnap_4345 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973369.1 256402 R 365044 CDS YP_973370.1 121582928 4685408 complement(257516..258163) 1 NC_008757.1 hypothetical protein 258163 4685408 Pnap_4346 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973370.1 257516 R 365044 CDS YP_973371.1 121582929 4685303 258301..258582 1 NC_008757.1 hypothetical protein 258582 4685303 Pnap_4347 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973371.1 258301 D 365044 CDS YP_973372.1 121582930 4685480 258965..259210 1 NC_008757.1 hypothetical protein 259210 4685480 Pnap_4348 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973372.1 258965 D 365044 CDS YP_973373.1 121582931 4685373 259676..260965 1 NC_008757.1 PFAM: phage integrase family protein; KEGG: dar:Daro_2218 hypothetical protein; phage integrase family protein 260965 4685373 Pnap_4349 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_973373.1 259676 D 365044 CDS YP_973374.1 121582932 4685209 261131..262006 1 NC_008757.1 PFAM: AntA/AntB antirepressor domain protein; KEGG: sbo:SBO_3650 putative anti-repressor protein; AntA/AntB antirepressor domain-containing protein 262006 4685209 Pnap_4350 Polaromonas naphthalenivorans CJ2 AntA/AntB antirepressor domain-containing protein YP_973374.1 261131 D 365044 CDS YP_973375.1 121582933 4685401 complement(262111..262665) 1 NC_008757.1 KEGG: aba:Acid345_1191 hypothetical protein; hypothetical protein 262665 4685401 Pnap_4351 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973375.1 262111 R 365044 CDS YP_973376.1 121582934 4685196 complement(262656..263072) 1 NC_008757.1 KEGG: xcv:XCVd0119 hypothetical protein; hypothetical protein 263072 4685196 Pnap_4352 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973376.1 262656 R 365044 CDS YP_973377.1 121582935 4685395 complement(263442..264428) 1 NC_008757.1 KEGG: pol:Bpro_5019 response regulator receiver domain protein (CheY-like); response regulator receiver protein 264428 4685395 Pnap_4354 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_973377.1 263442 R 365044 CDS YP_973378.1 121582936 4685442 266362..266949 1 NC_008757.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4045 transcriptional regulator, LuxR family; response regulator receiver protein 266949 4685442 Pnap_4356 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_973378.1 266362 D 365044 CDS YP_973379.1 121582937 4685204 complement(267222..267914) 1 NC_008757.1 KEGG: xac:XAC3949 hypothetical protein; hypothetical protein 267914 4685204 Pnap_4357 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973379.1 267222 R 365044 CDS YP_973380.1 121582938 4685299 complement(267920..268783) 1 NC_008757.1 KEGG: bxe:Bxe_C0677 hypothetical protein; hypothetical protein 268783 4685299 Pnap_4358 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973380.1 267920 R 365044 CDS YP_973381.1 121582939 4685198 complement(268848..271103) 1 NC_008757.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: xac:XAC3952 hypothetical protein; UBA/THIF-type NAD/FAD binding protein 271103 4685198 Pnap_4359 Polaromonas naphthalenivorans CJ2 UBA/THIF-type NAD/FAD binding protein YP_973381.1 268848 R 365044 CDS YP_973382.1 121582940 4685278 complement(271103..272257) 1 NC_008757.1 KEGG: gox:GOX2517 hypothetical protein; hypothetical protein 272257 4685278 Pnap_4360 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973382.1 271103 R 365044 CDS YP_973383.1 121582941 4685448 complement(272353..272895) 1 NC_008757.1 KEGG: bxe:Bxe_B0131 putative transposase; hypothetical protein 272895 4685448 Pnap_4361 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973383.1 272353 R 365044 CDS YP_973384.1 121582942 4685212 272942..273985 1 NC_008757.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: rfr:Rfer_2266 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 273985 4685212 Pnap_4362 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_973384.1 272942 D 365044 CDS YP_973385.1 121582943 4685166 complement(274270..274563) 1 NC_008757.1 PFAM: transposase IS3/IS911 family protein; KEGG: psb:Psyr_3811 transposase IS3/IS911; transposase IS3/IS911 family protein 274563 4685166 Pnap_4363 Polaromonas naphthalenivorans CJ2 transposase IS3/IS911 family protein YP_973385.1 274270 R 365044 CDS YP_973386.1 121582944 4685315 274796..275470 1 NC_008757.1 KEGG: reu:Reut_D6443 hypothetical protein; hypothetical protein 275470 4685315 Pnap_4364 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973386.1 274796 D 365044 CDS YP_973387.1 121582945 4685291 275467..275709 1 NC_008757.1 hypothetical protein 275709 4685291 Pnap_4365 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973387.1 275467 D 365044 CDS YP_973388.1 121582946 4685383 complement(275723..276046) 1 NC_008757.1 hypothetical protein 276046 4685383 Pnap_4366 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973388.1 275723 R 365044 CDS YP_973389.1 121582947 4685325 complement(277324..277776) 1 NC_008757.1 KEGG: rfr:Rfer_4341 DNA-directed DNA polymerase; DNA-directed DNA polymerase 277776 4685325 Pnap_4369 Polaromonas naphthalenivorans CJ2 DNA-directed DNA polymerase YP_973389.1 277324 R 365044 CDS YP_973390.1 121582948 4685320 complement(277790..278713) 1 NC_008757.1 KEGG: rme:Rmet_6035 hypothetical protein; hypothetical protein 278713 4685320 Pnap_4370 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973390.1 277790 R 365044 CDS YP_973391.1 121582949 4685378 complement(278710..279378) 1 NC_008757.1 KEGG: rso:RS05227 hypothetical protein; hypothetical protein 279378 4685378 Pnap_4371 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973391.1 278710 R 365044 CDS YP_973392.1 121582950 4685413 complement(279764..280444) 1 NC_008757.1 hypothetical protein 280444 4685413 Pnap_4372 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973392.1 279764 R 365044 CDS YP_973393.1 121582951 4685478 280602..280955 1 NC_008757.1 KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 280955 4685478 Pnap_4373 Polaromonas naphthalenivorans CJ2 DNA/RNA non-specific endonuclease YP_973393.1 280602 D 365044 CDS YP_973394.1 121582952 4685389 280963..281829 1 NC_008757.1 PFAM: Endonuclease I; KEGG: cvi:CV1988 deoxyribonuclease I; deoxyribonuclease I 281829 4685389 Pnap_4374 Polaromonas naphthalenivorans CJ2 deoxyribonuclease I YP_973394.1 280963 D 365044 CDS YP_973395.1 121582953 4685295 complement(281934..282941) 1 NC_008757.1 hypothetical protein 282941 4685295 Pnap_4375 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973395.1 281934 R 365044 CDS YP_973396.1 121582954 4685359 complement(282997..283458) 1 NC_008757.1 hypothetical protein 283458 4685359 Pnap_4376 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973396.1 282997 R 365044 CDS YP_973397.1 121582955 4685326 complement(283498..284193) 1 NC_008757.1 KEGG: bxe:Bxe_B0034 hypothetical protein; hypothetical protein 284193 4685326 Pnap_4377 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973397.1 283498 R 365044 CDS YP_973398.1 121582956 4685368 complement(284190..287387) 1 NC_008757.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0035 putative phage integrase; phage integrase family protein 287387 4685368 Pnap_4378 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_973398.1 284190 R 365044 CDS YP_973399.1 121582957 4685310 complement(287384..288706) 1 NC_008757.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0036 hypothetical protein; phage integrase family protein 288706 4685310 Pnap_4379 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_973399.1 287384 R 365044 CDS YP_973400.1 121582958 4685459 288997..289566 1 NC_008757.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 289566 4685459 Pnap_4380 Polaromonas naphthalenivorans CJ2 DNA/RNA non-specific endonuclease YP_973400.1 288997 D 365044 CDS YP_973401.1 121582959 4685297 289579..289833 1 NC_008757.1 KEGG: pol:Bpro_5414 hypothetical protein; hypothetical protein 289833 4685297 Pnap_4381 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973401.1 289579 D 365044 CDS YP_973402.1 121582960 4685292 290219..291574 1 NC_008757.1 KEGG: eba:ebA2494 hypothetical protein; hypothetical protein 291574 4685292 Pnap_4382 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973402.1 290219 D 365044 CDS YP_973403.1 121582961 4685284 291753..292514 1 NC_008757.1 KEGG: bxe:Bxe_A1797 hypothetical protein; hypothetical protein 292514 4685284 Pnap_4383 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973403.1 291753 D 365044 CDS YP_973404.1 121582962 4685287 292514..296014 1 NC_008757.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rpd:RPD_3630 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein 296014 4685287 Pnap_4384 Polaromonas naphthalenivorans CJ2 DEAD/DEAH box helicase domain-containing protein YP_973404.1 292514 D 365044 CDS YP_973405.1 121582963 4685281 complement(296587..298446) 1 NC_008757.1 KEGG: ana:alr4702 unknown protein; hypothetical protein 298446 4685281 Pnap_4385 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973405.1 296587 R 365044 CDS YP_973406.1 121582964 4685260 complement(298751..299263) 1 NC_008757.1 hypothetical protein 299263 4685260 Pnap_4386 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973406.1 298751 R 365044 CDS YP_973407.1 121582965 4685250 299906..301585 1 NC_008757.1 hypothetical protein 301585 4685250 Pnap_4387 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973407.1 299906 D 365044 CDS YP_973408.1 121582966 4685170 301600..304725 1 NC_008757.1 PFAM: SMC domain protein; KEGG: ani:AN3906.2 hypothetical protein; SMC domain-containing protein 304725 4685170 Pnap_4388 Polaromonas naphthalenivorans CJ2 SMC domain-containing protein YP_973408.1 301600 D 365044 CDS YP_973409.1 121582967 4685174 complement(305289..306959) 1 NC_008757.1 hypothetical protein 306959 4685174 Pnap_4389 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973409.1 305289 R 365044 CDS YP_973410.1 121582968 4685200 306991..307341 1 NC_008757.1 hypothetical protein 307341 4685200 Pnap_4390 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973410.1 306991 D 365044 CDS YP_973411.1 121582969 4685305 307699..309651 1 NC_008757.1 KEGG: hypothetical protein; hypothetical protein 309651 4685305 Pnap_4391 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973411.1 307699 D 365044 CDS YP_973412.1 121582970 4685342 309664..310890 1 NC_008757.1 KEGG: mcp:MCAP_0861 hypothetical protein; hypothetical protein 310890 4685342 Pnap_4392 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973412.1 309664 D 365044 CDS YP_973413.1 121582971 4685329 310877..311263 1 NC_008757.1 hypothetical protein 311263 4685329 Pnap_4393 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973413.1 310877 D 365044 CDS YP_973414.1 121582972 4685358 311264..313021 1 NC_008757.1 KEGG: mka:MK0070 superfamily I DNA/RNA helicase; superfamily I DNA/RNA helicase 313021 4685358 Pnap_4394 Polaromonas naphthalenivorans CJ2 superfamily I DNA/RNA helicase YP_973414.1 311264 D 365044 CDS YP_973415.1 121582973 4685385 complement(313388..313828) 1 NC_008757.1 KEGG: aci:ACIAD2665 hypothetical protein; hypothetical protein 313828 4685385 Pnap_4395 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973415.1 313388 R 365044 CDS YP_973416.1 121582974 4685418 314014..315552 1 NC_008757.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit 315552 4685418 Pnap_4396 Polaromonas naphthalenivorans CJ2 integrase catalytic subunit YP_973416.1 314014 D 365044 CDS YP_973417.1 121582975 4685479 315594..316325 1 NC_008757.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; IstB ATP binding domain-containing protein 316325 4685479 Pnap_4397 Polaromonas naphthalenivorans CJ2 IstB ATP binding domain-containing protein YP_973417.1 315594 D 365044 CDS YP_973418.1 121582976 4685476 complement(316591..317220) 1 NC_008757.1 KEGG: sma:SAV6022 putative dihydrolipoamide S-succinyltransferase; hypothetical protein 317220 4685476 Pnap_4398 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973418.1 316591 R 365044 CDS YP_973419.1 121582977 4685475 complement(317593..318579) 1 NC_008757.1 KEGG: rfr:Rfer_4294 hypothetical protein; hypothetical protein 318579 4685475 Pnap_4399 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973419.1 317593 R 365044 CDS YP_973420.1 121582978 4685469 complement(318941..319195) 1 NC_008757.1 hypothetical protein 319195 4685469 Pnap_4400 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973420.1 318941 R 365044 CDS YP_973421.1 121582979 4685468 complement(320087..321268) 1 NC_008757.1 KEGG: rme:Rmet_2228 hypothetical protein; hypothetical protein 321268 4685468 Pnap_4401 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973421.1 320087 R 365044 CDS YP_973422.1 121582980 4685466 complement(321428..322165) 1 NC_008757.1 KEGG: rfr:Rfer_4484 hypothetical protein; hypothetical protein 322165 4685466 Pnap_4402 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973422.1 321428 R 365044 CDS YP_973423.1 121582981 4685456 complement(322286..322558) 1 NC_008757.1 hypothetical protein 322558 4685456 Pnap_4403 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973423.1 322286 R 365044 CDS YP_973424.1 121582982 4685451 complement(322574..323155) 1 NC_008757.1 hypothetical protein 323155 4685451 Pnap_4404 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973424.1 322574 R 365044 CDS YP_973425.1 121582983 4685454 complement(323214..324647) 1 NC_008757.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5402 HNH endonuclease; HNH endonuclease 324647 4685454 Pnap_4405 Polaromonas naphthalenivorans CJ2 HNH endonuclease YP_973425.1 323214 R 365044 CDS YP_973426.1 121582984 4685440 complement(325225..325935) 1 NC_008757.1 KEGG: xfa:XF1762 hypothetical protein; hypothetical protein 325935 4685440 Pnap_4406 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973426.1 325225 R 365044 CDS YP_973427.1 121582985 4685438 complement(325953..326225) 1 NC_008757.1 hypothetical protein 326225 4685438 Pnap_4407 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973427.1 325953 R 365044 CDS YP_973428.1 121582986 4685425 326471..327529 1 NC_008757.1 PFAM: transposase, IS4 family protein; KEGG: lpf:lpl2868 hypothetical protein; transposase, IS4 family protein 327529 4685425 Pnap_4408 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_973428.1 326471 D 365044 CDS YP_973429.1 121582987 4685423 complement(327773..328357) 1 NC_008757.1 KEGG: eba:p1B349 hypothetical protein; hypothetical protein 328357 4685423 Pnap_4409 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973429.1 327773 R 365044 CDS YP_973430.1 121582988 4685410 complement(328587..328874) 1 NC_008757.1 KEGG: rfr:Rfer_4448 hypothetical protein; hypothetical protein 328874 4685410 Pnap_4410 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973430.1 328587 R 365044 CDS YP_973431.1 121582989 4685407 complement(329146..329403) 1 NC_008757.1 hypothetical protein 329403 4685407 Pnap_4411 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973431.1 329146 R 365044 CDS YP_973432.1 121582990 4685406 complement(329417..329725) 1 NC_008757.1 KEGG: pol:Bpro_5393 hypothetical protein; hypothetical protein 329725 4685406 Pnap_4412 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973432.1 329417 R 365044 CDS YP_973433.1 121582991 4685392 complement(329694..330395) 1 NC_008757.1 hypothetical protein 330395 4685392 Pnap_4413 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973433.1 329694 R 365044 CDS YP_973434.1 121582992 4685386 complement(330411..330653) 1 NC_008757.1 hypothetical protein 330653 4685386 Pnap_4414 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973434.1 330411 R 365044 CDS YP_973435.1 121582993 4685384 complement(331284..331571) 1 NC_008757.1 hypothetical protein 331571 4685384 Pnap_4415 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973435.1 331284 R 365044 CDS YP_973436.1 121582994 4685379 331624..331845 1 NC_008757.1 hypothetical protein 331845 4685379 Pnap_4416 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973436.1 331624 D 365044 CDS YP_973437.1 121582995 4685369 complement(331889..332182) 1 NC_008757.1 hypothetical protein 332182 4685369 Pnap_4417 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973437.1 331889 R 365044 CDS YP_973438.1 121582996 4685374 complement(332416..332736) 1 NC_008757.1 hypothetical protein 332736 4685374 Pnap_4418 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973438.1 332416 R 365044 CDS YP_973439.1 121582997 4685356 complement(332760..333041) 1 NC_008757.1 KEGG: pol:Bpro_5379 hypothetical protein; hypothetical protein 333041 4685356 Pnap_4419 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973439.1 332760 R 365044 CDS YP_973440.1 121582998 4685357 complement(333041..333364) 1 NC_008757.1 hypothetical protein 333364 4685357 Pnap_4420 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973440.1 333041 R 365044 CDS YP_973441.1 121582999 4685338 complement(333381..333671) 1 NC_008757.1 hypothetical protein 333671 4685338 Pnap_4421 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973441.1 333381 R 365044 CDS YP_973442.1 121583000 4685340 complement(333813..334214) 1 NC_008757.1 hypothetical protein 334214 4685340 Pnap_4422 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973442.1 333813 R 365044 CDS YP_973443.1 121583001 4685339 complement(334304..335527) 1 NC_008757.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pol:Bpro_0014 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic 335527 4685339 Pnap_4423 Polaromonas naphthalenivorans CJ2 filamentation induced by cAMP protein Fic YP_973443.1 334304 R 365044 CDS YP_973444.1 121583002 4685164 337056..337331 1 NC_008757.1 KEGG: bxe:Bxe_A4409 two component transcriptional regulator, fis family; response regulator receiver protein 337331 4685164 Pnap_4425 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_973444.1 337056 D 365044 CDS YP_973445.1 121583003 4685306 complement(337441..337902) 1 NC_008757.1 hypothetical protein 337902 4685306 Pnap_4426 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973445.1 337441 R 365044 CDS YP_973446.1 121583004 4685317 complement(337915..338196) 1 NC_008757.1 hypothetical protein 338196 4685317 Pnap_4427 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973446.1 337915 R 365044 CDS YP_973447.1 121583005 4685313 complement(338216..338539) 1 NC_008757.1 hypothetical protein 338539 4685313 Pnap_4428 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973447.1 338216 R 365044 CDS YP_973448.1 121583006 4685309 complement(338536..339147) 1 NC_008757.1 hypothetical protein 339147 4685309 Pnap_4429 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973448.1 338536 R 365044 CDS YP_973449.1 121583007 4685296 complement(339167..340312) 1 NC_008757.1 KEGG: pol:Bpro_5391 hypothetical protein; hypothetical protein 340312 4685296 Pnap_4430 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973449.1 339167 R 365044 CDS YP_973450.1 121583008 4685302 complement(340322..341386) 1 NC_008757.1 KEGG: pol:Bpro_5390 phage integrase; phage integrase 341386 4685302 Pnap_4431 Polaromonas naphthalenivorans CJ2 phage integrase YP_973450.1 340322 R 365044 CDS YP_973451.1 121583009 4685375 complement(341958..343025) 1 NC_008757.1 KEGG: pol:Bpro_5076 hypothetical protein; hypothetical protein 343025 4685375 Pnap_4432 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973451.1 341958 R 365044 CDS YP_973452.1 121583010 4685364 complement(343022..343594) 1 NC_008757.1 KEGG: pha:PSHAb0292 putative HNH endonuclease; hypothetical protein 343594 4685364 Pnap_4433 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973452.1 343022 R 365044 CDS YP_973453.1 121583011 4685437 complement(343636..344595) 1 NC_008757.1 PFAM: transposase, IS4 family protein; KEGG: bte:BTH_II0087 transposase; transposase, IS4 family protein 344595 4685437 Pnap_4434 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_973453.1 343636 R 365044 CDS YP_973454.1 121583012 4685409 344685..344867 1 NC_008757.1 KEGG: gox:GOX2701 DNA integration/recombination/invertion protein; DNA integration/recombination/invertion protein 344867 4685409 Pnap_4435 Polaromonas naphthalenivorans CJ2 DNA integration/recombination/invertion protein YP_973454.1 344685 D 365044 CDS YP_973455.1 121583013 4685361 complement(344981..345916) 1 NC_008757.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: psp:PSPPH_2948 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 345916 4685361 Pnap_4436 Polaromonas naphthalenivorans CJ2 DNA/RNA non-specific endonuclease YP_973455.1 344981 R 365044 CDS YP_973456.1 121583014 4685447 complement(345938..348892) 1 NC_008757.1 KEGG: rpe:RPE_4640 hypothetical protein; hypothetical protein 348892 4685447 Pnap_4437 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973456.1 345938 R 365044 CDS YP_973457.1 121583015 4685321 complement(348889..350694) 1 NC_008757.1 hypothetical protein 350694 4685321 Pnap_4438 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973457.1 348889 R 365044 CDS YP_973458.1 121583016 4685362 complement(350694..353246) 1 NC_008757.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: rpe:RPE_4642 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 353246 4685362 Pnap_4439 Polaromonas naphthalenivorans CJ2 peptidase S8/S53 subtilisin kexin sedolisin YP_973458.1 350694 R 365044 CDS YP_973459.1 121583018 4685481 402..641 1 NC_008758.1 hypothetical protein 641 4685481 Pnap_4440 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973459.1 402 D 365044 CDS YP_973460.1 121583019 4685648 850..2157 1 NC_008758.1 KEGG: hypothetical protein; hypothetical protein 2157 4685648 Pnap_4441 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973460.1 850 D 365044 CDS YP_973461.1 121583020 4685649 2160..2741 1 NC_008758.1 KEGG: pfl:PFL_5240 hypothetical protein; hypothetical protein 2741 4685649 Pnap_4442 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973461.1 2160 D 365044 CDS YP_973462.1 121583021 4685650 2738..5578 1 NC_008758.1 KEGG: pha:PSHAa1245 hypothetical protein; hypothetical protein 5578 4685650 Pnap_4443 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973462.1 2738 D 365044 CDS YP_973463.1 121583022 4685651 5575..6525 1 NC_008758.1 hypothetical protein 6525 4685651 Pnap_4444 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973463.1 5575 D 365044 CDS YP_973464.1 121583023 4685642 complement(6606..6926) 1 NC_008758.1 hypothetical protein 6926 4685642 Pnap_4445 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973464.1 6606 R 365044 CDS YP_973465.1 121583024 4685643 7274..8443 1 NC_008758.1 hypothetical protein 8443 4685643 Pnap_4446 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973465.1 7274 D 365044 CDS YP_973466.1 121583025 4685640 8927..9319 1 NC_008758.1 PFAM: transposase IS3/IS911 family protein; KEGG: hypothetical protein; transposase IS3/IS911 family protein 9319 4685640 Pnap_4447 Polaromonas naphthalenivorans CJ2 transposase IS3/IS911 family protein YP_973466.1 8927 D 365044 CDS YP_973467.1 121583026 4685641 9316..9657 1 NC_008758.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_3060 IS66 Orf2 like; IS66 Orf2 family protein 9657 4685641 Pnap_4448 Polaromonas naphthalenivorans CJ2 IS66 Orf2 family protein YP_973467.1 9316 D 365044 CDS YP_973468.1 121583027 4685644 9739..11325 1 NC_008758.1 PFAM: transposase IS66; KEGG: bxe:Bxe_A2416 transposase ISPpu14 orf3 like, IS66 family; transposase IS66 11325 4685644 Pnap_4449 Polaromonas naphthalenivorans CJ2 transposase IS66 YP_973468.1 9739 D 365044 CDS YP_973469.1 121583028 4685486 complement(12108..12353) 1 NC_008758.1 KEGG: bxe:Bxe_B1865 transposase IS66 family; hypothetical protein 12353 4685486 Pnap_4451 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973469.1 12108 R 365044 CDS YP_973470.1 121583029 4685646 12777..12968 1 NC_008758.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: bms:BRA0379 DNA-damage-inducible protein J, putative; addiction module antitoxin 12968 4685646 Pnap_4452 Polaromonas naphthalenivorans CJ2 addiction module antitoxin YP_973470.1 12777 D 365044 CDS YP_973471.1 121583030 4685647 13006..13941 1 NC_008758.1 KEGG: bms:BRA0378 hypothetical protein; hypothetical protein 13941 4685647 Pnap_4453 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973471.1 13006 D 365044 CDS YP_973472.1 121583031 4685635 13938..14189 1 NC_008758.1 KEGG: tfu:Tfu_0717 hypothetical protein; hypothetical protein 14189 4685635 Pnap_4454 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973472.1 13938 D 365044 CDS YP_973473.1 121583032 4685636 14186..15907 1 NC_008758.1 KEGG: bms:BRA0377 hypothetical protein; hypothetical protein 15907 4685636 Pnap_4455 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973473.1 14186 D 365044 CDS YP_973474.1 121583033 4685633 complement(16794..17612) 1 NC_008758.1 hypothetical protein 17612 4685633 Pnap_4456 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973474.1 16794 R 365044 CDS YP_973475.1 121583034 4685634 18089..18520 1 NC_008758.1 KEGG: hdu:HD0159 hypothetical protein; hypothetical protein 18520 4685634 Pnap_4457 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973475.1 18089 D 365044 CDS YP_973476.1 121583035 4685637 18685..19140 1 NC_008758.1 hypothetical protein 19140 4685637 Pnap_4458 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973476.1 18685 D 365044 CDS YP_973477.1 121583036 4685638 19312..19848 1 NC_008758.1 hypothetical protein 19848 4685638 Pnap_4459 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973477.1 19312 D 365044 CDS YP_973478.1 121583037 4685639 20136..20393 1 NC_008758.1 hypothetical protein 20393 4685639 Pnap_4460 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973478.1 20136 D 365044 CDS YP_973479.1 121583038 4685627 21293..22660 1 NC_008758.1 hypothetical protein 22660 4685627 Pnap_4461 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973479.1 21293 D 365044 CDS YP_973480.1 121583039 4685628 23343..23999 1 NC_008758.1 KEGG: spj:MGAS2096_Spy0566 hypothetical protein; hypothetical protein 23999 4685628 Pnap_4462 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973480.1 23343 D 365044 CDS YP_973481.1 121583040 4685625 24543..25442 1 NC_008758.1 hypothetical protein 25442 4685625 Pnap_4463 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973481.1 24543 D 365044 CDS YP_973482.1 121583041 4685626 25439..25990 1 NC_008758.1 hypothetical protein 25990 4685626 Pnap_4464 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973482.1 25439 D 365044 CDS YP_973483.1 121583042 4685629 25984..26301 1 NC_008758.1 hypothetical protein 26301 4685629 Pnap_4465 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973483.1 25984 D 365044 CDS YP_973484.1 121583043 4685630 26298..26645 1 NC_008758.1 hypothetical protein 26645 4685630 Pnap_4466 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973484.1 26298 D 365044 CDS YP_973485.1 121583044 4685631 26973..27188 1 NC_008758.1 hypothetical protein 27188 4685631 Pnap_4467 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973485.1 26973 D 365044 CDS YP_973486.1 121583045 4685632 complement(28632..29723) 1 NC_008758.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: reu:Reut_D6444 ParB-like partition protein; parB-like partition proteins 29723 4685632 Pnap_4468 Polaromonas naphthalenivorans CJ2 parB-like partition proteins YP_973486.1 28632 R 365044 CDS YP_973487.1 121583046 4685621 30096..31088 1 NC_008758.1 KEGG: rfr:Rfer_2033 helicase C2; Rad3-related DNA helicases-like protein 31088 4685621 Pnap_4469 Polaromonas naphthalenivorans CJ2 Rad3-related DNA helicases-like protein YP_973487.1 30096 D 365044 CDS YP_973488.1 121583047 4685622 complement(31163..32176) 1 NC_008758.1 KEGG: pol:Bpro_5045 TrfA; hypothetical protein 32176 4685622 Pnap_4470 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973488.1 31163 R 365044 CDS YP_973489.1 121583048 4685619 complement(33169..34173) 1 NC_008758.1 TIGRFAM: parB-like partition proteins; SMART: ParB domain protein nuclease; KEGG: rme:Rmet_5820 ParB-like partition proteins; parB-like partition proteins 34173 4685619 Pnap_4471 Polaromonas naphthalenivorans CJ2 parB-like partition proteins YP_973489.1 33169 R 365044 CDS YP_973490.1 121583049 4685620 complement(34170..34868) 1 NC_008758.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_5515 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 34868 4685620 Pnap_4472 Polaromonas naphthalenivorans CJ2 cobyrinic acid a,c-diamide synthase YP_973490.1 34170 R 365044 CDS YP_973491.1 121583050 4685623 complement(36177..38006) 1 NC_008758.1 PFAM: phage integrase family protein; KEGG: rme:Rmet_6086 phage integrase; phage integrase family protein 38006 4685623 Pnap_4473 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_973491.1 36177 R 365044 CDS YP_973492.1 121583051 4685484 complement(39859..41004) 1 NC_008758.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: nmu:Nmul_A0832 histidine kinase; histidine kinase 41004 4685484 Pnap_4475 Polaromonas naphthalenivorans CJ2 histidine kinase YP_973492.1 39859 R 365044 CDS YP_973493.1 121583052 4685613 complement(41278..41568) 1 NC_008758.1 hypothetical protein 41568 4685613 Pnap_4476 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973493.1 41278 R 365044 CDS YP_973494.1 121583053 4685487 complement(43641..46463) 1 NC_008758.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_1191 ATPase, E1-E2 type; P-type HAD superfamily ATPase 46463 4685487 Pnap_4479 Polaromonas naphthalenivorans CJ2 P-type HAD superfamily ATPase YP_973494.1 43641 R 365044 CDS YP_973495.1 121583054 4685611 complement(46580..46798) 1 NC_008758.1 KEGG: rpc:RPC_4057 putative transposase; putative transposase 46798 4685611 Pnap_4480 Polaromonas naphthalenivorans CJ2 putative transposase YP_973495.1 46580 R 365044 CDS YP_973496.1 121583055 4685612 46898..48223 1 NC_008758.1 KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 48223 4685612 Pnap_4481 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973496.1 46898 D 365044 CDS YP_973497.1 121583056 4685615 complement(48225..48509) 1 NC_008758.1 KEGG: spn:SP0811 transposase family protein; transposase family protein 48509 4685615 Pnap_4482 Polaromonas naphthalenivorans CJ2 transposase family protein YP_973497.1 48225 R 365044 CDS YP_973498.1 121583057 4685616 complement(48509..49057) 1 NC_008758.1 KEGG: pol:Bpro_3862 hypothetical protein; hypothetical protein 49057 4685616 Pnap_4483 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973498.1 48509 R 365044 CDS YP_973499.1 121583058 4685617 49497..49931 1 NC_008758.1 PFAM: transposase, IS4 family protein; KEGG: rme:Rmet_4228 transposase, IS4; transposase, IS4 family protein 49931 4685617 Pnap_4484 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_973499.1 49497 D 365044 CDS YP_973500.1 121583059 4685618 50164..51234 1 NC_008758.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_2845 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 51234 4685618 Pnap_4485 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_973500.1 50164 D 365044 CDS YP_973501.1 121583060 4685605 52320..52772 1 NC_008758.1 hypothetical protein 52772 4685605 Pnap_4486 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973501.1 52320 D 365044 CDS YP_973502.1 121583061 4685606 53119..53355 1 NC_008758.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pmu:PM1891 mercuric ion-binding protein, putative; heavy metal transport/detoxification protein 53355 4685606 Pnap_4487 Polaromonas naphthalenivorans CJ2 heavy metal transport/detoxification protein YP_973502.1 53119 D 365044 CDS YP_973503.1 121583062 4685603 53352..54212 1 NC_008758.1 PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344; hypothetical protein 54212 4685603 Pnap_4488 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973503.1 53352 D 365044 CDS YP_973504.1 121583063 4685604 54236..54673 1 NC_008758.1 PFAM: Heavy metal transport/detoxification protein; KEGG: rfr:Rfer_1143 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 54673 4685604 Pnap_4489 Polaromonas naphthalenivorans CJ2 heavy metal transport/detoxification protein YP_973504.1 54236 D 365044 CDS YP_973505.1 121583064 4685607 54761..55153 1 NC_008758.1 hypothetical protein 55153 4685607 Pnap_4490 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973505.1 54761 D 365044 CDS YP_973506.1 121583065 4685608 55228..57897 1 NC_008758.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase; copper-translocating P-type ATPase 57897 4685608 Pnap_4491 Polaromonas naphthalenivorans CJ2 copper-translocating P-type ATPase YP_973506.1 55228 D 365044 CDS YP_973507.1 121583066 4685609 58522..58788 1 NC_008758.1 KEGG: eli:ELI_04580 hypothetical protein; hypothetical protein 58788 4685609 Pnap_4492 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973507.1 58522 D 365044 CDS YP_973508.1 121583067 4685610 59253..60926 1 NC_008758.1 KEGG: eba:ebA6677 hypothetical protein; hypothetical protein 60926 4685610 Pnap_4493 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973508.1 59253 D 365044 CDS YP_973509.1 121583068 4685597 60942..62774 1 NC_008758.1 KEGG: rfr:Rfer_3652 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; asparagine synthase 62774 4685597 Pnap_4494 Polaromonas naphthalenivorans CJ2 asparagine synthase YP_973509.1 60942 D 365044 CDS YP_973510.1 121583069 4685598 62771..63877 1 NC_008758.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 63877 4685598 Pnap_4495 Polaromonas naphthalenivorans CJ2 transaldolase YP_973510.1 62771 D 365044 CDS YP_973511.1 121583070 4685595 63874..65535 1 NC_008758.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 65535 4685595 Pnap_4496 Polaromonas naphthalenivorans CJ2 phosphoglucomutase YP_973511.1 63874 D 365044 CDS YP_973512.1 121583071 4685596 65532..67904 1 NC_008758.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: rpc:RPC_3807 fructose-6-phosphate phosphoketolase; putative phosphoketolase 67904 4685596 Pnap_4497 Polaromonas naphthalenivorans CJ2 putative phosphoketolase YP_973512.1 65532 D 365044 CDS YP_973513.1 121583072 4685599 67901..68971 1 NC_008758.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: bxe:Bxe_B1346 acetate kinase; acetate kinase 68971 4685599 Pnap_4498 Polaromonas naphthalenivorans CJ2 acetate kinase YP_973513.1 67901 D 365044 CDS YP_973514.1 121583073 4685600 68992..71058 1 NC_008758.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: bcn:Bcen_5284 transketolase; transketolase 71058 4685600 Pnap_4499 Polaromonas naphthalenivorans CJ2 transketolase YP_973514.1 68992 D 365044 CDS YP_973515.1 121583074 4685601 complement(71029..71745) 1 NC_008758.1 KEGG: bxe:Bxe_B1342 hypothetical protein; hypothetical protein 71745 4685601 Pnap_4500 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973515.1 71029 R 365044 CDS YP_973516.1 121583075 4685602 complement(71792..72817) 1 NC_008758.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 72817 4685602 Pnap_4501 Polaromonas naphthalenivorans CJ2 6-phosphogluconate dehydrogenase YP_973516.1 71792 R 365044 CDS YP_973517.1 121583076 4685589 73378..74346 1 NC_008758.1 KEGG: ret:RHE_CH01344 myo-inositol catabolism, sugar kinase protein; hypothetical protein 74346 4685589 Pnap_4502 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973517.1 73378 D 365044 CDS YP_973518.1 121583077 4685590 74343..75674 1 NC_008758.1 KEGG: rfr:Rfer_1146 hypothetical protein; hypothetical protein 75674 4685590 Pnap_4503 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973518.1 74343 D 365044 CDS YP_973519.1 121583078 4685587 75735..76118 1 NC_008758.1 hypothetical protein 76118 4685587 Pnap_4504 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973519.1 75735 D 365044 CDS YP_973520.1 121583079 4685588 complement(76277..76939) 1 NC_008758.1 KEGG: mma:MM3344 transposase; transposase 76939 4685588 Pnap_4505 Polaromonas naphthalenivorans CJ2 transposase YP_973520.1 76277 R 365044 CDS YP_973521.1 121583080 4685591 complement(76936..77409) 1 NC_008758.1 KEGG: mma:MM3343 transposase; transposase 77409 4685591 Pnap_4506 Polaromonas naphthalenivorans CJ2 transposase YP_973521.1 76936 R 365044 CDS YP_973522.1 121583081 4685592 complement(77447..78565) 1 NC_008758.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: cbu:CBU_0096 cardiolipin synthetase; phospholipase D/transphosphatidylase 78565 4685592 Pnap_4507 Polaromonas naphthalenivorans CJ2 phospholipase D/transphosphatidylase YP_973522.1 77447 R 365044 CDS YP_973523.1 121583082 4685593 complement(78580..79122) 1 NC_008758.1 KEGG: eli:ELI_14395 hypothetical protein; hypothetical protein 79122 4685593 Pnap_4508 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973523.1 78580 R 365044 CDS YP_973524.1 121583083 4685594 79505..79906 1 NC_008758.1 KEGG: bbr:BB1194 arsenical pump membrane protein; hypothetical protein 79906 4685594 Pnap_4509 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973524.1 79505 D 365044 CDS YP_973525.1 121583084 4685581 79924..80322 1 NC_008758.1 KEGG: pol:Bpro_3494 hypothetical protein; hypothetical protein 80322 4685581 Pnap_4510 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973525.1 79924 D 365044 CDS YP_973526.1 121583085 4685582 80399..81685 1 NC_008758.1 PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3493 outer membrane efflux protein; outer membrane efflux protein 81685 4685582 Pnap_4511 Polaromonas naphthalenivorans CJ2 outer membrane efflux protein YP_973526.1 80399 D 365044 CDS YP_973527.1 121583086 4685579 81682..83340 1 NC_008758.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3492 secretion protein HlyD; RND family efflux transporter MFP subunit 83340 4685579 Pnap_4512 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_973527.1 81682 D 365044 CDS YP_973528.1 121583087 4685580 83337..86504 1 NC_008758.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_3491 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 86504 4685580 Pnap_4513 Polaromonas naphthalenivorans CJ2 CzcA family heavy metal efflux protein YP_973528.1 83337 D 365044 CDS YP_973529.1 121583088 4685583 86692..87102 1 NC_008758.1 hypothetical protein 87102 4685583 Pnap_4514 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973529.1 86692 D 365044 CDS YP_973530.1 121583089 4685584 87292..87756 1 NC_008758.1 KEGG: rfr:Rfer_0421 hypothetical protein; hypothetical protein 87756 4685584 Pnap_4515 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973530.1 87292 D 365044 CDS YP_973531.1 121583090 4685585 87770..88030 1 NC_008758.1 KEGG: pol:Bpro_1174 hypothetical protein; hypothetical protein 88030 4685585 Pnap_4516 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973531.1 87770 D 365044 CDS YP_973532.1 121583091 4685586 88165..89808 1 NC_008758.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: aae:aq_1130 periplasmic cell division protein (SufI); Bilirubin oxidase 89808 4685586 Pnap_4517 Polaromonas naphthalenivorans CJ2 Bilirubin oxidase YP_973532.1 88165 D 365044 CDS YP_973533.1 121583092 4685573 89859..90137 1 NC_008758.1 KEGG: rfr:Rfer_0420 hypothetical protein; hypothetical protein 90137 4685573 Pnap_4518 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973533.1 89859 D 365044 CDS YP_973534.1 121583093 4685574 90140..90808 1 NC_008758.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pol:Bpro_1176 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 90808 4685574 Pnap_4519 Polaromonas naphthalenivorans CJ2 isoprenylcysteine carboxyl methyltransferase YP_973534.1 90140 D 365044 CDS YP_973535.1 121583094 4685571 90858..91151 1 NC_008758.1 PFAM: Heavy metal transport/detoxification protein; KEGG: rso:RSc3348 probable cation-transporting ATPase transmembrane protein; heavy metal transport/detoxification protein 91151 4685571 Pnap_4520 Polaromonas naphthalenivorans CJ2 heavy metal transport/detoxification protein YP_973535.1 90858 D 365044 CDS YP_973536.1 121583095 4685572 91210..91422 1 NC_008758.1 KEGG: pol:Bpro_1177 hypothetical protein; hypothetical protein 91422 4685572 Pnap_4521 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973536.1 91210 D 365044 CDS YP_973537.1 121583096 4685575 91582..91824 1 NC_008758.1 PFAM: Heavy metal transport/detoxification protein; KEGG: mbu:Mbur_0612 copper-translocating P-type ATPase; heavy metal transport/detoxification protein 91824 4685575 Pnap_4522 Polaromonas naphthalenivorans CJ2 heavy metal transport/detoxification protein YP_973537.1 91582 D 365044 CDS YP_973538.1 121583097 4685576 91821..92675 1 NC_008758.1 PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344; hypothetical protein 92675 4685576 Pnap_4523 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973538.1 91821 D 365044 CDS YP_973539.1 121583098 4685577 92699..95170 1 NC_008758.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase; copper-translocating P-type ATPase 95170 4685577 Pnap_4524 Polaromonas naphthalenivorans CJ2 copper-translocating P-type ATPase YP_973539.1 92699 D 365044 CDS YP_973540.1 121583099 4685578 95459..96223 1 NC_008758.1 KEGG: rpb:RPB_1025 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 96223 4685578 Pnap_4525 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_973540.1 95459 D 365044 CDS YP_973541.1 121583100 4685565 96224..98005 1 NC_008758.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; Propanediol utilization protein; KEGG: nwi:Nwi_1948 acetate kinase; acetate kinase 98005 4685565 Pnap_4526 Polaromonas naphthalenivorans CJ2 acetate kinase YP_973541.1 96224 D 365044 CDS YP_973542.1 121583101 4685566 98009..99853 1 NC_008758.1 KEGG: lpp:lpp2348 hypothetical protein; hypothetical protein 99853 4685566 Pnap_4527 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973542.1 98009 D 365044 CDS YP_973543.1 121583102 4685563 99937..101208 1 NC_008758.1 PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_4365 major facilitator superfamily MFS_1; major facilitator superfamily transporter 101208 4685563 Pnap_4528 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_973543.1 99937 D 365044 CDS YP_973544.1 121583103 4685564 101310..101453 1 NC_008758.1 KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 101453 4685564 Pnap_4529 Polaromonas naphthalenivorans CJ2 heavy metal translocating P-type ATPase YP_973544.1 101310 D 365044 CDS YP_973545.1 121583104 4685567 101560..101721 1 NC_008758.1 KEGG: pol:Bpro_1612 creatininase; creatininase 101721 4685567 Pnap_4530 Polaromonas naphthalenivorans CJ2 creatininase YP_973545.1 101560 D 365044 CDS YP_973546.1 121583105 4685568 101889..102047 1 NC_008758.1 hypothetical protein 102047 4685568 Pnap_4531 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973546.1 101889 D 365044 CDS YP_973547.1 121583106 4685569 102127..102573 1 NC_008758.1 PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_0340 transposase IS3/IS911; transposase IS3/IS911 family protein 102573 4685569 Pnap_4532 Polaromonas naphthalenivorans CJ2 transposase IS3/IS911 family protein YP_973547.1 102127 D 365044 CDS YP_973548.1 121583107 4685570 102561..102914 1 NC_008758.1 PFAM: IS66 Orf2 family protein; KEGG: reu:Reut_C6378 IS66 Orf2 like; IS66 Orf2 family protein 102914 4685570 Pnap_4533 Polaromonas naphthalenivorans CJ2 IS66 Orf2 family protein YP_973548.1 102561 D 365044 CDS YP_973549.1 121583108 4685557 102997..104595 1 NC_008758.1 PFAM: transposase IS66; KEGG: reu:Reut_C6183 transposase IS66; transposase IS66 104595 4685557 Pnap_4534 Polaromonas naphthalenivorans CJ2 transposase IS66 YP_973549.1 102997 D 365044 CDS YP_973550.1 121583109 4685558 105063..105359 1 NC_008758.1 PFAM: protein of unknown function DUF305; KEGG: mlo:mlr5326 hypothetical protein; hypothetical protein 105359 4685558 Pnap_4535 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973550.1 105063 D 365044 CDS YP_973551.1 121583110 4685555 105920..106324 1 NC_008758.1 hypothetical protein 106324 4685555 Pnap_4536 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973551.1 105920 D 365044 CDS YP_973552.1 121583111 4685556 106515..106961 1 NC_008758.1 KEGG: rfr:Rfer_0421 hypothetical protein; hypothetical protein 106961 4685556 Pnap_4537 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973552.1 106515 D 365044 CDS YP_973553.1 121583112 4685559 106975..107235 1 NC_008758.1 KEGG: pol:Bpro_1174 hypothetical protein; hypothetical protein 107235 4685559 Pnap_4538 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973553.1 106975 D 365044 CDS YP_973554.1 121583113 4685560 107317..107619 1 NC_008758.1 KEGG: pol:Bpro_1175 hypothetical protein; hypothetical protein 107619 4685560 Pnap_4539 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973554.1 107317 D 365044 CDS YP_973555.1 121583114 4685561 107616..108266 1 NC_008758.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: rfr:Rfer_0419 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 108266 4685561 Pnap_4540 Polaromonas naphthalenivorans CJ2 isoprenylcysteine carboxyl methyltransferase YP_973555.1 107616 D 365044 CDS YP_973556.1 121583115 4685562 108358..108585 1 NC_008758.1 PFAM: Heavy metal transport/detoxification protein; KEGG: tbd:Tbd_1659 probable copper ion binding protein; heavy metal transport/detoxification protein 108585 4685562 Pnap_4541 Polaromonas naphthalenivorans CJ2 heavy metal transport/detoxification protein YP_973556.1 108358 D 365044 CDS YP_973557.1 121583116 4685549 108840..109493 1 NC_008758.1 KEGG: pol:Bpro_1196 hypothetical protein; hypothetical protein 109493 4685549 Pnap_4542 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973557.1 108840 D 365044 CDS YP_973558.1 121583117 4685488 110062..110694 1 NC_008758.1 PFAM: LemA family protein; KEGG: nha:Nham_3402 LemA; LemA family protein 110694 4685488 Pnap_4544 Polaromonas naphthalenivorans CJ2 LemA family protein YP_973558.1 110062 D 365044 CDS YP_973559.1 121583118 4685547 110691..111551 1 NC_008758.1 PFAM: protein of unknown function DUF477; KEGG: bxe:Bxe_A1903 putative glycine rich membrane protein; hypothetical protein 111551 4685547 Pnap_4545 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973559.1 110691 D 365044 CDS YP_973560.1 121583119 4685548 111554..112051 1 NC_008758.1 PFAM: protein of unknown function DUF477; KEGG: rpb:RPB_3954 protein of unknown function DUF477; hypothetical protein 112051 4685548 Pnap_4546 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973560.1 111554 D 365044 CDS YP_973561.1 121583120 4685551 112201..114597 1 NC_008758.1 KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 114597 4685551 Pnap_4547 Polaromonas naphthalenivorans CJ2 heavy metal translocating P-type ATPase YP_973561.1 112201 D 365044 CDS YP_973562.1 121583121 4685552 114747..115790 1 NC_008758.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat; YVTN beta-propeller repeat-containing protein 115790 4685552 Pnap_4548 Polaromonas naphthalenivorans CJ2 YVTN beta-propeller repeat-containing protein YP_973562.1 114747 D 365044 CDS YP_973563.1 121583122 4685553 115790..116215 1 NC_008758.1 KEGG: mmc:Mmcs_1460 hypothetical protein; hypothetical protein 116215 4685553 Pnap_4549 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973563.1 115790 D 365044 CDS YP_973564.1 121583123 4685554 complement(116701..117054) 1 NC_008758.1 KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein 117054 4685554 Pnap_4550 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973564.1 116701 R 365044 CDS YP_973565.1 121583124 4685541 complement(117139..117654) 1 NC_008758.1 PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain; blue (type1) copper domain-containing protein 117654 4685541 Pnap_4551 Polaromonas naphthalenivorans CJ2 blue (type1) copper domain-containing protein YP_973565.1 117139 R 365044 CDS YP_973566.1 121583125 4685542 complement(117704..119137) 1 NC_008758.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase, type 3 119137 4685542 Pnap_4552 Polaromonas naphthalenivorans CJ2 multicopper oxidase, type 3 YP_973566.1 117704 R 365044 CDS YP_973567.1 121583126 4685539 complement(119184..120602) 1 NC_008758.1 KEGG: pol:Bpro_3484 putative copper resistance-related lipoprotein; putative copper resistance-related lipoprotein 120602 4685539 Pnap_4553 Polaromonas naphthalenivorans CJ2 putative copper resistance-related lipoprotein YP_973567.1 119184 R 365044 CDS YP_973568.1 121583127 4685540 complement(120616..120954) 1 NC_008758.1 KEGG: pol:Bpro_3483 hypothetical protein; hypothetical protein 120954 4685540 Pnap_4554 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973568.1 120616 R 365044 CDS YP_973569.1 121583128 4685543 complement(121077..121523) 1 NC_008758.1 KEGG: pol:Bpro_3482 hypothetical protein; hypothetical protein 121523 4685543 Pnap_4555 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973569.1 121077 R 365044 CDS YP_973570.1 121583129 4685544 complement(121685..121966) 1 NC_008758.1 KEGG: dar:Daro_2282 hypothetical protein; hypothetical protein 121966 4685544 Pnap_4556 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973570.1 121685 R 365044 CDS YP_973571.1 121583130 4685545 complement(122187..123563) 1 NC_008758.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pfl:PFL_3148 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase 123563 4685545 Pnap_4557 Polaromonas naphthalenivorans CJ2 heavy metal sensor signal transduction histidine kinase YP_973571.1 122187 R 365044 CDS YP_973572.1 121583131 4685546 complement(123608..124288) 1 NC_008758.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4285 heavy-metal DNA-binding response regulator CzrR; two component heavy metal response transcriptional regulator 124288 4685546 Pnap_4558 Polaromonas naphthalenivorans CJ2 two component heavy metal response transcriptional regulator YP_973572.1 123608 R 365044 CDS YP_973573.1 121583132 4685533 124443..124817 1 NC_008758.1 hypothetical protein 124817 4685533 Pnap_4559 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973573.1 124443 D 365044 CDS YP_973574.1 121583133 4685534 124858..125208 1 NC_008758.1 KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein 125208 4685534 Pnap_4560 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973574.1 124858 D 365044 CDS YP_973575.1 121583134 4685489 125941..126216 1 NC_008758.1 PFAM: protein of unknown function DUF305; KEGG: mlo:mlr5326 hypothetical protein; hypothetical protein 126216 4685489 Pnap_4562 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973575.1 125941 D 365044 CDS YP_973576.1 121583135 4685532 126334..127275 1 NC_008758.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bld:BLi02092 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 127275 4685532 Pnap_4563 Polaromonas naphthalenivorans CJ2 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_973576.1 126334 D 365044 CDS YP_973577.1 121583136 4685535 complement(127625..128887) 1 NC_008758.1 KEGG: rme:Rmet_6120 hypothetical protein; hypothetical protein 128887 4685535 Pnap_4564 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973577.1 127625 R 365044 CDS YP_973578.1 121583137 4685490 129919..131268 1 NC_008758.1 PFAM: outer membrane efflux protein; KEGG: dar:Daro_2620 outer membrane efflux protein; outer membrane efflux protein 131268 4685490 Pnap_4566 Polaromonas naphthalenivorans CJ2 outer membrane efflux protein YP_973578.1 129919 D 365044 CDS YP_973579.1 121583138 4685537 131296..131856 1 NC_008758.1 KEGG: dar:Daro_2619 hypothetical protein; hypothetical protein 131856 4685537 Pnap_4567 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973579.1 131296 D 365044 CDS YP_973580.1 121583139 4685538 131853..132986 1 NC_008758.1 KEGG: dar:Daro_2618 hypothetical protein; hypothetical protein 132986 4685538 Pnap_4568 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973580.1 131853 D 365044 CDS YP_973581.1 121583140 4685525 133000..136119 1 NC_008758.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2617 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 136119 4685525 Pnap_4569 Polaromonas naphthalenivorans CJ2 CzcA family heavy metal efflux protein YP_973581.1 133000 D 365044 CDS YP_973582.1 121583141 4685526 136180..136557 1 NC_008758.1 KEGG: dar:Daro_2616 hypothetical protein; hypothetical protein 136557 4685526 Pnap_4570 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973582.1 136180 D 365044 CDS YP_973583.1 121583142 4685523 complement(136640..137125) 1 NC_008758.1 hypothetical protein 137125 4685523 Pnap_4571 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973583.1 136640 R 365044 CDS YP_973584.1 121583143 4685524 complement(137238..138251) 1 NC_008758.1 KEGG: pol:Bpro_5390 phage integrase; phage integrase 138251 4685524 Pnap_4572 Polaromonas naphthalenivorans CJ2 phage integrase YP_973584.1 137238 R 365044 CDS YP_973585.1 121583144 4685527 complement(138452..139333) 1 NC_008758.1 KEGG: xom:XOO_2997 hypothetical protein; hypothetical protein 139333 4685527 Pnap_4573 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973585.1 138452 R 365044 CDS YP_973586.1 121583145 4685528 complement(139353..139961) 1 NC_008758.1 KEGG: lpp:lpp2423 hypothetical protein; hypothetical protein 139961 4685528 Pnap_4574 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973586.1 139353 R 365044 CDS YP_973587.1 121583146 4685530 complement(141836..142213) 1 NC_008758.1 KEGG: ana:alr4702 unknown protein; hypothetical protein 142213 4685530 Pnap_4577 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973587.1 141836 R 365044 CDS YP_973588.1 121583147 4685517 142679..143044 1 NC_008758.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pol:Bpro_3984 histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 143044 4685517 Pnap_4578 Polaromonas naphthalenivorans CJ2 histone family protein nucleoid-structuring protein H-NS YP_973588.1 142679 D 365044 CDS YP_973589.1 121583148 4685483 143907..144353 1 NC_008758.1 PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 144353 4685483 Pnap_4579 Polaromonas naphthalenivorans CJ2 RNP-1 like RNA-binding protein YP_973589.1 143907 D 365044 CDS YP_973590.1 121583149 4685515 144864..145745 1 NC_008758.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_A1834 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 145745 4685515 Pnap_4580 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_973590.1 144864 D 365044 CDS YP_973591.1 121583150 4685516 145791..146423 1 NC_008758.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sil:SPO0563 glutathione S-transferase, putative; glutathione S-transferase domain-containing protein 146423 4685516 Pnap_4581 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_973591.1 145791 D 365044 CDS YP_973592.1 121583151 4685519 146614..147075 1 NC_008758.1 hypothetical protein 147075 4685519 Pnap_4582 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973592.1 146614 D 365044 CDS YP_973593.1 121583152 4685520 147500..148423 1 NC_008758.1 KEGG: eca:ECA2874 hypothetical protein; hypothetical protein 148423 4685520 Pnap_4583 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973593.1 147500 D 365044 CDS YP_973594.1 121583153 4685521 148416..151751 1 NC_008758.1 KEGG: eca:ECA2875 putative ATP-binding protein; putative ATP-binding protein 151751 4685521 Pnap_4584 Polaromonas naphthalenivorans CJ2 putative ATP-binding protein YP_973594.1 148416 D 365044 CDS YP_973595.1 121583154 4685522 151744..152583 1 NC_008758.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: eca:ECA2876 putative phage-related protein; phosphoadenosine phosphosulfate reductase 152583 4685522 Pnap_4585 Polaromonas naphthalenivorans CJ2 phosphoadenosine phosphosulfate reductase YP_973595.1 151744 D 365044 CDS YP_973596.1 121583155 4685509 complement(152593..154620) 1 NC_008758.1 KEGG: eca:ECA2877 hypothetical protein; hypothetical protein 154620 4685509 Pnap_4586 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973596.1 152593 R 365044 CDS YP_973597.1 121583156 4685510 complement(154617..156971) 1 NC_008758.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: eca:ECA2878 putative signal transduction protein; histidine kinase 156971 4685510 Pnap_4587 Polaromonas naphthalenivorans CJ2 histidine kinase YP_973597.1 154617 R 365044 CDS YP_973598.1 121583157 4685507 complement(157006..162444) 1 NC_008758.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: tth:TTC0474 cell division protein ftsK; cell division protein FtsK 162444 4685507 Pnap_4588 Polaromonas naphthalenivorans CJ2 cell division protein FtsK YP_973598.1 157006 R 365044 CDS YP_973599.1 121583158 4685508 complement(162441..163967) 1 NC_008758.1 hypothetical protein 163967 4685508 Pnap_4589 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973599.1 162441 R 365044 CDS YP_973600.1 121583159 4685511 complement(163964..164860) 1 NC_008758.1 hypothetical protein 164860 4685511 Pnap_4590 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973600.1 163964 R 365044 CDS YP_973601.1 121583160 4685512 164912..165424 1 NC_008758.1 hypothetical protein 165424 4685512 Pnap_4591 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973601.1 164912 D 365044 CDS YP_973602.1 121583161 4685513 complement(166252..166830) 1 NC_008758.1 KEGG: pol:Bpro_5319 hypothetical protein; hypothetical protein 166830 4685513 Pnap_4592 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973602.1 166252 R 365044 CDS YP_973603.1 121583162 4685514 complement(166827..167396) 1 NC_008758.1 KEGG: pol:Bpro_5318 prevent-host-death protein; prevent-host-death protein 167396 4685514 Pnap_4593 Polaromonas naphthalenivorans CJ2 prevent-host-death protein YP_973603.1 166827 R 365044 CDS YP_973604.1 121583163 4685501 167433..167678 1 NC_008758.1 KEGG: eba:ebA246 putative transposase, fragment; hypothetical protein 167678 4685501 Pnap_4594 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973604.1 167433 D 365044 CDS YP_973605.1 121583164 4685502 168101..168976 1 NC_008758.1 hypothetical protein 168976 4685502 Pnap_4595 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973605.1 168101 D 365044 CDS YP_973606.1 121583165 4685499 complement(170094..170477) 1 NC_008758.1 KEGG: eba:ebA562 transposase; transposase 170477 4685499 Pnap_4596 Polaromonas naphthalenivorans CJ2 transposase YP_973606.1 170094 R 365044 CDS YP_973607.1 121583166 4685500 complement(170759..170971) 1 NC_008758.1 PFAM: transposase IS3/IS911 family protein; KEGG: rso:RSp0547 ISRSO8-transposase orfA protein; transposase IS3/IS911 family protein 170971 4685500 Pnap_4597 Polaromonas naphthalenivorans CJ2 transposase IS3/IS911 family protein YP_973607.1 170759 R 365044 CDS YP_973608.1 121583167 4685503 171211..171600 1 NC_008758.1 hypothetical protein 171600 4685503 Pnap_4598 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973608.1 171211 D 365044 CDS YP_973609.1 121583168 4685504 171603..172796 1 NC_008758.1 SMART: AAA ATPase; KEGG: dar:Daro_3951 AAA ATPase, central region; ATPase AAA 172796 4685504 Pnap_4599 Polaromonas naphthalenivorans CJ2 ATPase AAA YP_973609.1 171603 D 365044 CDS YP_973610.1 121583169 4685505 172879..173319 1 NC_008758.1 hypothetical protein 173319 4685505 Pnap_4600 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973610.1 172879 D 365044 CDS YP_973611.1 121583170 4685506 173898..174209 1 NC_008758.1 KEGG: dra:DRB0120m putative transposase; hypothetical protein 174209 4685506 Pnap_4601 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973611.1 173898 D 365044 CDS YP_973612.1 121583171 4685493 complement(174395..175015) 1 NC_008758.1 PFAM: Radical SAM domain protein; KEGG: mxa:MXAN_2901 putative radical SAM domain protein; radical SAM domain-containing protein 175015 4685493 Pnap_4602 Polaromonas naphthalenivorans CJ2 radical SAM domain-containing protein YP_973612.1 174395 R 365044 CDS YP_973613.1 121583172 4685494 complement(175012..176886) 1 NC_008758.1 PFAM: ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: bcn:Bcen_1418 ATPase AAA-2; ATPase 176886 4685494 Pnap_4603 Polaromonas naphthalenivorans CJ2 ATPase YP_973613.1 175012 R 365044 CDS YP_973614.1 121583173 4685491 complement(176873..177976) 1 NC_008758.1 hypothetical protein 177976 4685491 Pnap_4604 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973614.1 176873 R 365044 CDS YP_973615.1 121583174 4685492 complement(177990..180455) 1 NC_008758.1 SMART: Nucleotide binding protein, PINc; nucleotide binding protein, PINc 180455 4685492 Pnap_4605 Polaromonas naphthalenivorans CJ2 nucleotide binding protein, PINc YP_973615.1 177990 R 365044 CDS YP_973616.1 121583175 4685495 complement(180452..184306) 1 NC_008758.1 KEGG: rpd:RPD_2126 ATPase; superfamily I DNA/RNA helicase 184306 4685495 Pnap_4606 Polaromonas naphthalenivorans CJ2 superfamily I DNA/RNA helicase YP_973616.1 180452 R 365044 CDS YP_973617.1 121583176 4685496 complement(184487..184906) 1 NC_008758.1 hypothetical protein 184906 4685496 Pnap_4607 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973617.1 184487 R 365044 CDS YP_973618.1 121583177 4685497 complement(185415..186455) 1 NC_008758.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase; transposase IS116/IS110/IS902 family protein 186455 4685497 Pnap_4608 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_973618.1 185415 R 365044 CDS YP_973619.1 121583178 4685482 188932..189345 1 NC_008758.1 hypothetical protein 189345 4685482 Pnap_4610 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973619.1 188932 D 365044 CDS YP_973620.1 121583184 4685702 complement(508..1071) 1 NC_008759.1 hypothetical protein 1071 4685702 Pnap_4813 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973620.1 508 R 365044 CDS YP_973621.1 121583185 4685688 complement(1068..2318) 1 NC_008759.1 KEGG: sit:TM1040_0955 conserved hypothetical protein; hypothetical protein 2318 4685688 Pnap_4814 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973621.1 1068 R 365044 CDS YP_973622.1 121583186 4685735 complement(2427..2984) 1 NC_008759.1 hypothetical protein 2984 4685735 Pnap_4815 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973622.1 2427 R 365044 CDS YP_973623.1 121583187 4685736 complement(3338..4129) 1 NC_008759.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: rfr:Rfer_0852 methionine aminopeptidase, type I; methionine aminopeptidase, type I 4129 4685736 Pnap_4816 Polaromonas naphthalenivorans CJ2 methionine aminopeptidase, type I YP_973623.1 3338 R 365044 CDS YP_973624.1 121583188 4685672 complement(4129..4383) 1 NC_008759.1 KEGG: rfr:Rfer_0851 hypothetical protein; hypothetical protein 4383 4685672 Pnap_4817 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973624.1 4129 R 365044 CDS YP_973625.1 121583189 4685673 complement(4526..5320) 1 NC_008759.1 hypothetical protein 5320 4685673 Pnap_4818 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973625.1 4526 R 365044 CDS YP_973626.1 121583190 4685715 5435..5764 1 NC_008759.1 KEGG: lpl:lp_3570 transposase (putative); transposase (putative) 5764 4685715 Pnap_4819 Polaromonas naphthalenivorans CJ2 transposase (putative) YP_973626.1 5435 D 365044 CDS YP_973627.1 121583191 4685716 5883..6194 1 NC_008759.1 KEGG: neu:NE1552 transposase IS4 family; hypothetical protein 6194 4685716 Pnap_4820 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973627.1 5883 D 365044 CDS YP_973628.1 121583192 4685809 6216..6782 1 NC_008759.1 KEGG: bcn:Bcen_5856 hypothetical protein; hypothetical protein 6782 4685809 Pnap_4821 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973628.1 6216 D 365044 CDS YP_973629.1 121583193 4685810 7040..7771 1 NC_008759.1 hypothetical protein 7771 4685810 Pnap_4822 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973629.1 7040 D 365044 CDS YP_973630.1 121583194 4685709 7768..8064 1 NC_008759.1 hypothetical protein 8064 4685709 Pnap_4823 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973630.1 7768 D 365044 CDS YP_973631.1 121583195 4685710 8080..8490 1 NC_008759.1 hypothetical protein 8490 4685710 Pnap_4824 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973631.1 8080 D 365044 CDS YP_973632.1 121583196 4685694 complement(8463..9788) 1 NC_008759.1 KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 9788 4685694 Pnap_4825 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973632.1 8463 R 365044 CDS YP_973633.1 121583197 4685695 complement(10686..11291) 1 NC_008759.1 hypothetical protein 11291 4685695 Pnap_4826 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973633.1 10686 R 365044 CDS YP_973634.1 121583198 4685801 11519..12142 1 NC_008759.1 hypothetical protein 12142 4685801 Pnap_4827 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973634.1 11519 D 365044 CDS YP_973635.1 121583199 4685802 12347..13003 1 NC_008759.1 hypothetical protein 13003 4685802 Pnap_4828 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973635.1 12347 D 365044 CDS YP_973636.1 121583200 4685797 13077..13469 1 NC_008759.1 KEGG: eba:ebA106 hypothetical protein; hypothetical protein 13469 4685797 Pnap_4829 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973636.1 13077 D 365044 CDS YP_973637.1 121583201 4685798 13466..14689 1 NC_008759.1 KEGG: pol:Bpro_0961 hypothetical protein; hypothetical protein 14689 4685798 Pnap_4830 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973637.1 13466 D 365044 CDS YP_973638.1 121583202 4685693 complement(15293..16102) 1 NC_008759.1 PFAM: Silent information regulator protein Sir2; KEGG: bxe:Bxe_B2799 silent information regulator protein Sir2; silent information regulator protein Sir2 16102 4685693 Pnap_4831 Polaromonas naphthalenivorans CJ2 silent information regulator protein Sir2 YP_973638.1 15293 R 365044 CDS YP_973639.1 121583203 4685666 complement(16723..17220) 1 NC_008759.1 KEGG: pol:Bpro_5386 hypothetical protein; hypothetical protein 17220 4685666 Pnap_4832 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973639.1 16723 R 365044 CDS YP_973640.1 121583204 4685667 18125..18871 1 NC_008759.1 KEGG: bxe:Bxe_A0247 hypothetical protein; hypothetical protein 18871 4685667 Pnap_4833 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973640.1 18125 D 365044 CDS YP_973641.1 121583205 4685684 18868..19368 1 NC_008759.1 KEGG: bps:BPSL0759 hypothetical protein; hypothetical protein 19368 4685684 Pnap_4834 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973641.1 18868 D 365044 CDS YP_973642.1 121583206 4685685 19365..19685 1 NC_008759.1 hypothetical protein 19685 4685685 Pnap_4835 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973642.1 19365 D 365044 CDS YP_973643.1 121583207 4685660 19682..19996 1 NC_008759.1 hypothetical protein 19996 4685660 Pnap_4836 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973643.1 19682 D 365044 CDS YP_973644.1 121583208 4685661 20058..20303 1 NC_008759.1 hypothetical protein 20303 4685661 Pnap_4837 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973644.1 20058 D 365044 CDS YP_973645.1 121583209 4685664 20392..20631 1 NC_008759.1 hypothetical protein 20631 4685664 Pnap_4838 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973645.1 20392 D 365044 CDS YP_973646.1 121583210 4685665 complement(20637..20846) 1 NC_008759.1 hypothetical protein 20846 4685665 Pnap_4839 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973646.1 20637 R 365044 CDS YP_973647.1 121583211 4685807 20886..21182 1 NC_008759.1 KEGG: bbr:BB2366 putative DNA-binding protein; putative DNA-binding protein 21182 4685807 Pnap_4840 Polaromonas naphthalenivorans CJ2 putative DNA-binding protein YP_973647.1 20886 D 365044 CDS YP_973648.1 121583212 4685808 21179..21535 1 NC_008759.1 hypothetical protein 21535 4685808 Pnap_4841 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973648.1 21179 D 365044 CDS YP_973649.1 121583213 4685698 complement(21728..23065) 1 NC_008759.1 KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 23065 4685698 Pnap_4842 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973649.1 21728 R 365044 CDS YP_973650.1 121583214 4685699 23547..23921 1 NC_008759.1 hypothetical protein 23921 4685699 Pnap_4843 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973650.1 23547 D 365044 CDS YP_973651.1 121583215 4685727 23918..24709 1 NC_008759.1 PFAM: metallophosphoesterase; KEGG: bps:BPSL0758 putative phosphoesterase; metallophosphoesterase 24709 4685727 Pnap_4844 Polaromonas naphthalenivorans CJ2 metallophosphoesterase YP_973651.1 23918 D 365044 CDS YP_973652.1 121583216 4685728 24757..25020 1 NC_008759.1 hypothetical protein 25020 4685728 Pnap_4845 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973652.1 24757 D 365044 CDS YP_973653.1 121583217 4685674 complement(25037..25342) 1 NC_008759.1 PFAM: acylphosphatase; KEGG: rso:RSc0219 putative acylphosphatase protein; acylphosphatase 25342 4685674 Pnap_4846 Polaromonas naphthalenivorans CJ2 acylphosphatase YP_973653.1 25037 R 365044 CDS YP_973654.1 121583218 4685675 25421..25666 1 NC_008759.1 hypothetical protein 25666 4685675 Pnap_4847 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973654.1 25421 D 365044 CDS YP_973655.1 121583219 4685654 26218..27315 1 NC_008759.1 KEGG: pfo:Pfl_3330 DNA alkylation repair enzyme-like; DNA alkylation repair enzyme-like protein 27315 4685654 Pnap_4848 Polaromonas naphthalenivorans CJ2 DNA alkylation repair enzyme-like protein YP_973655.1 26218 D 365044 CDS YP_973656.1 121583220 4685655 27545..28195 1 NC_008759.1 PFAM: helix-turn-helix domain protein; KEGG: tbd:Tbd_1344 transcriptional regulator, XRE family; XRE family transcriptional regulator 28195 4685655 Pnap_4849 Polaromonas naphthalenivorans CJ2 XRE family transcriptional regulator YP_973656.1 27545 D 365044 CDS YP_973657.1 121583221 4685703 complement(28519..28791) 1 NC_008759.1 KEGG: dar:Daro_1923 hypothetical protein; hypothetical protein 28791 4685703 Pnap_4850 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973657.1 28519 R 365044 CDS YP_973658.1 121583222 4685704 complement(28880..29233) 1 NC_008759.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: pfl:PFL_3843 MazG nucleotide pyrophosphohydrolase domain protein; MazG nucleotide pyrophosphohydrolase 29233 4685704 Pnap_4851 Polaromonas naphthalenivorans CJ2 MazG nucleotide pyrophosphohydrolase YP_973658.1 28880 R 365044 CDS YP_973659.1 121583223 4685691 29356..30111 1 NC_008759.1 KEGG: hypothetical protein; hypothetical protein 30111 4685691 Pnap_4852 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973659.1 29356 D 365044 CDS YP_973660.1 121583224 4685692 30119..30565 1 NC_008759.1 KEGG: gme:Gmet_3000 conserved hypothetical protein-signal peptide prediction; signal peptide prediction 30565 4685692 Pnap_4853 Polaromonas naphthalenivorans CJ2 signal peptide prediction YP_973660.1 30119 D 365044 CDS YP_973661.1 121583225 4685725 complement(31290..32399) 1 NC_008759.1 KEGG: pol:Bpro_2110 hypothetical protein; hypothetical protein 32399 4685725 Pnap_4854 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973661.1 31290 R 365044 CDS YP_973662.1 121583226 4685726 32558..33916 1 NC_008759.1 PFAM: HipA domain protein; KEGG: pol:Bpro_1570 HipA-like; hypothetical protein 33916 4685726 Pnap_4855 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973662.1 32558 D 365044 CDS YP_973663.1 121583227 4685719 complement(34250..34507) 1 NC_008759.1 KEGG: noc:Noc_1099 hypothetical protein; hypothetical protein 34507 4685719 Pnap_4856 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973663.1 34250 R 365044 CDS YP_973664.1 121583228 4685786 35461..36123 1 NC_008759.1 PFAM: protein of unknown function DUF433; KEGG: ret:RHE_PA00164 hypothetical protein; hypothetical protein 36123 4685786 Pnap_4858 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973664.1 35461 D 365044 CDS YP_973665.1 121583229 4685737 36413..37345 1 NC_008759.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bxe:Bxe_B0843 heavy metal/H+ antiporter, CDF family; cation diffusion facilitator family transporter 37345 4685737 Pnap_4859 Polaromonas naphthalenivorans CJ2 cation diffusion facilitator family transporter YP_973665.1 36413 D 365044 CDS YP_973666.1 121583230 4685738 complement(37426..38112) 1 NC_008759.1 KEGG: dar:Daro_1179 hypothetical protein; hypothetical protein 38112 4685738 Pnap_4860 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973666.1 37426 R 365044 CDS YP_973667.1 121583231 4685711 38152..38619 1 NC_008759.1 hypothetical protein 38619 4685711 Pnap_4861 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973667.1 38152 D 365044 CDS YP_973668.1 121583232 4685712 38745..39215 1 NC_008759.1 hypothetical protein 39215 4685712 Pnap_4862 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973668.1 38745 D 365044 CDS YP_973669.1 121583233 4685662 complement(39451..39924) 1 NC_008759.1 hypothetical protein 39924 4685662 Pnap_4863 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973669.1 39451 R 365044 CDS YP_973670.1 121583234 4685663 complement(40277..40531) 1 NC_008759.1 hypothetical protein 40531 4685663 Pnap_4864 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973670.1 40277 R 365044 CDS YP_973671.1 121583235 4685729 41313..41759 1 NC_008759.1 KEGG: rfr:Rfer_0742 hypothetical protein; hypothetical protein 41759 4685729 Pnap_4865 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973671.1 41313 D 365044 CDS YP_973672.1 121583236 4685730 42101..42526 1 NC_008759.1 hypothetical protein 42526 4685730 Pnap_4866 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973672.1 42101 D 365044 CDS YP_973673.1 121583237 4685678 42622..43443 1 NC_008759.1 SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: reu:Reut_B4467 helix-turn-helix, AraC type; helix-turn-helix domain-containing protein 43443 4685678 Pnap_4867 Polaromonas naphthalenivorans CJ2 helix-turn-helix domain-containing protein YP_973673.1 42622 D 365044 CDS YP_973674.1 121583238 4685679 complement(43431..44705) 1 NC_008759.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: reu:Reut_B4466 di-haem cytochrome c peroxidase; di-haem cytochrome c peroxidase 44705 4685679 Pnap_4868 Polaromonas naphthalenivorans CJ2 di-haem cytochrome c peroxidase YP_973674.1 43431 R 365044 CDS YP_973675.1 121583239 4685658 complement(44702..45538) 1 NC_008759.1 KEGG: reu:Reut_B4465 auxin-binding protein; hypothetical protein 45538 4685658 Pnap_4869 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973675.1 44702 R 365044 CDS YP_973676.1 121583240 4685659 46264..46680 1 NC_008759.1 hypothetical protein 46680 4685659 Pnap_4870 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973676.1 46264 D 365044 CDS YP_973677.1 121583241 4685652 complement(46954..48015) 1 NC_008759.1 SMART: HNH nuclease; KEGG: rfr:Rfer_1208 HNH nuclease; HNH nuclease 48015 4685652 Pnap_4871 Polaromonas naphthalenivorans CJ2 HNH nuclease YP_973677.1 46954 R 365044 CDS YP_973678.1 121583242 4685653 complement(48020..48421) 1 NC_008759.1 PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1209 histidine triad (HIT) protein; histidine triad (HIT) protein 48421 4685653 Pnap_4872 Polaromonas naphthalenivorans CJ2 histidine triad (HIT) protein YP_973678.1 48020 R 365044 CDS YP_973679.1 121583243 4685769 complement(48530..49258) 1 NC_008759.1 KEGG: noc:Noc_1323 hypothetical protein; hypothetical protein 49258 4685769 Pnap_4873 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973679.1 48530 R 365044 CDS YP_973680.1 121583244 4685770 complement(49378..50232) 1 NC_008759.1 hypothetical protein 50232 4685770 Pnap_4874 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973680.1 49378 R 365044 CDS YP_973681.1 121583245 4685793 complement(50424..50852) 1 NC_008759.1 KEGG: rfr:Rfer_3110 hypothetical protein; hypothetical protein 50852 4685793 Pnap_4875 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973681.1 50424 R 365044 CDS YP_973682.1 121583246 4685794 51097..52152 1 NC_008759.1 hypothetical protein 52152 4685794 Pnap_4876 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973682.1 51097 D 365044 CDS YP_973683.1 121583247 4685811 complement(52493..53179) 1 NC_008759.1 hypothetical protein 53179 4685811 Pnap_4877 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973683.1 52493 R 365044 CDS YP_973684.1 121583248 4685812 54079..55809 1 NC_008759.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 55809 xseA 4685812 xseA Polaromonas naphthalenivorans CJ2 exodeoxyribonuclease VII large subunit YP_973684.1 54079 D 365044 CDS YP_973685.1 121583249 4685723 55817..56092 1 NC_008759.1 KEGG: par:Psyc_1292 hypothetical protein; hypothetical protein 56092 4685723 Pnap_4879 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973685.1 55817 D 365044 CDS YP_973686.1 121583250 4685724 complement(56142..56549) 1 NC_008759.1 KEGG: bxe:Bxe_A3008 hypothetical protein; hypothetical protein 56549 4685724 Pnap_4880 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973686.1 56142 R 365044 CDS YP_973687.1 121583251 4685689 complement(56811..57206) 1 NC_008759.1 PFAM: TfoX, N-terminal domain protein; KEGG: pol:Bpro_0665 TfoX-like; TfoX domain-containing protein 57206 4685689 Pnap_4881 Polaromonas naphthalenivorans CJ2 TfoX domain-containing protein YP_973687.1 56811 R 365044 CDS YP_973688.1 121583252 4685690 57338..57604 1 NC_008759.1 KEGG: bxe:Bxe_B0210 hypothetical protein; hypothetical protein 57604 4685690 Pnap_4882 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973688.1 57338 D 365044 CDS YP_973689.1 121583253 4685676 57852..58097 1 NC_008759.1 KEGG: rfr:Rfer_0740 hypothetical protein; hypothetical protein 58097 4685676 Pnap_4883 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973689.1 57852 D 365044 CDS YP_973690.1 121583254 4685677 58609..59103 1 NC_008759.1 hypothetical protein 59103 4685677 Pnap_4884 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973690.1 58609 D 365044 CDS YP_973691.1 121583255 4685668 59235..59714 1 NC_008759.1 hypothetical protein 59714 4685668 Pnap_4885 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973691.1 59235 D 365044 CDS YP_973692.1 121583256 4685669 60019..60363 1 NC_008759.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: eba:ebB208 putative HNS-like transcription regulator protein; histone family protein nucleoid-structuring protein H-NS 60363 4685669 Pnap_4886 Polaromonas naphthalenivorans CJ2 histone family protein nucleoid-structuring protein H-NS YP_973692.1 60019 D 365044 CDS YP_973693.1 121583257 4685686 complement(60826..61050) 1 NC_008759.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bcn:Bcen_4816 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 61050 4685686 Pnap_4887 Polaromonas naphthalenivorans CJ2 AbrB family transcriptional regulator YP_973693.1 60826 R 365044 CDS YP_973694.1 121583258 4685687 61259..61846 1 NC_008759.1 hypothetical protein 61846 4685687 Pnap_4888 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973694.1 61259 D 365044 CDS YP_973695.1 121583259 4685656 61865..62161 1 NC_008759.1 KEGG: pen:PSEEN3029 chromate transporter; hypothetical protein 62161 4685656 Pnap_4889 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973695.1 61865 D 365044 CDS YP_973696.1 121583260 4685657 complement(62249..62722) 1 NC_008759.1 SMART: helix-turn-helix domain protein; KEGG: pae:PA0906 probable transcriptional regulator; XRE family transcriptional regulator 62722 4685657 Pnap_4890 Polaromonas naphthalenivorans CJ2 XRE family transcriptional regulator YP_973696.1 62249 R 365044 CDS YP_973697.1 121583261 4685753 complement(62792..64600) 1 NC_008759.1 KEGG: bps:BPSL0750 hypothetical protein; hypothetical protein 64600 4685753 Pnap_4891 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973697.1 62792 R 365044 CDS YP_973698.1 121583262 4685754 complement(64585..65088) 1 NC_008759.1 KEGG: bps:BPSL0749 hypothetical protein; hypothetical protein 65088 4685754 Pnap_4892 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973698.1 64585 R 365044 CDS YP_973699.1 121583263 4685670 complement(65085..66152) 1 NC_008759.1 KEGG: bps:BPSL0748 hypothetical protein; hypothetical protein 66152 4685670 Pnap_4893 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973699.1 65085 R 365044 CDS YP_973700.1 121583264 4685671 66377..67198 1 NC_008759.1 KEGG: rfr:Rfer_1225 hypothetical protein; hypothetical protein 67198 4685671 Pnap_4894 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973700.1 66377 D 365044 CDS YP_973701.1 121583265 4685743 67137..68468 1 NC_008759.1 KEGG: rfr:Rfer_1226 hypothetical protein; hypothetical protein 68468 4685743 Pnap_4895 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973701.1 67137 D 365044 CDS YP_973702.1 121583266 4685744 68478..71603 1 NC_008759.1 KEGG: rfr:Rfer_1227 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III, alpha subunit 71603 4685744 Pnap_4896 Polaromonas naphthalenivorans CJ2 DNA polymerase III, alpha subunit YP_973702.1 68478 D 365044 CDS YP_973703.1 121583267 4685682 complement(72067..73236) 1 NC_008759.1 hypothetical protein 73236 4685682 Pnap_4897 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973703.1 72067 R 365044 CDS YP_973704.1 121583268 4685683 73646..74188 1 NC_008759.1 KEGG: rfr:Rfer_4341 DNA-directed DNA polymerase; DNA-directed DNA polymerase 74188 4685683 Pnap_4898 Polaromonas naphthalenivorans CJ2 DNA-directed DNA polymerase YP_973704.1 73646 D 365044 CDS YP_973705.1 121583269 4685803 74383..75180 1 NC_008759.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 75180 4685803 Pnap_4899 Polaromonas naphthalenivorans CJ2 DNA/RNA non-specific endonuclease YP_973705.1 74383 D 365044 CDS YP_973706.1 121583270 4685804 complement(76772..78175) 1 NC_008759.1 KEGG: bps:BPSL0747 hypothetical protein; hypothetical protein 78175 4685804 Pnap_4900 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973706.1 76772 R 365044 CDS YP_973707.1 121583271 4685745 78211..78651 1 NC_008759.1 hypothetical protein 78651 4685745 Pnap_4901 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973707.1 78211 D 365044 CDS YP_973708.1 121583272 4685746 complement(78798..79379) 1 NC_008759.1 KEGG: rfr:Rfer_1226 hypothetical protein; hypothetical protein 79379 4685746 Pnap_4902 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973708.1 78798 R 365044 CDS YP_973709.1 121583273 4685696 complement(79379..79630) 1 NC_008759.1 hypothetical protein 79630 4685696 Pnap_4903 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973709.1 79379 R 365044 CDS YP_973710.1 121583274 4685697 complement(79641..80123) 1 NC_008759.1 KEGG: dar:Daro_0976 hypothetical protein; hypothetical protein 80123 4685697 Pnap_4904 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973710.1 79641 R 365044 CDS YP_973711.1 121583275 4685747 80664..82586 1 NC_008759.1 KEGG: rpa:RPA3945 hypothetical protein; hypothetical protein 82586 4685747 Pnap_4905 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973711.1 80664 D 365044 CDS YP_973712.1 121583276 4685748 complement(82892..84841) 1 NC_008759.1 KEGG: bte:BTH_I2719 pathogenesis-related protein; pathogenesis-related protein 84841 4685748 Pnap_4906 Polaromonas naphthalenivorans CJ2 pathogenesis-related protein YP_973712.1 82892 R 365044 CDS YP_973713.1 121583277 4685749 complement(84838..87147) 1 NC_008759.1 KEGG: bte:BTH_I2720 hypothetical protein; hypothetical protein 87147 4685749 Pnap_4907 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973713.1 84838 R 365044 CDS YP_973714.1 121583278 4685750 87667..87915 1 NC_008759.1 hypothetical protein 87915 4685750 Pnap_4908 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973714.1 87667 D 365044 CDS YP_973715.1 121583279 4685713 complement(88038..88877) 1 NC_008759.1 PFAM: protein of unknown function DUF88; KEGG: xcv:XCV1700 hypothetical protein; hypothetical protein 88877 4685713 Pnap_4909 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973715.1 88038 R 365044 CDS YP_973716.1 121583280 4685714 89447..91201 1 NC_008759.1 KEGG: bcn:Bcen_2889 N-6 DNA methylase; N-6 DNA methylase 91201 4685714 Pnap_4910 Polaromonas naphthalenivorans CJ2 N-6 DNA methylase YP_973716.1 89447 D 365044 CDS YP_973717.1 121583281 4685757 91204..94035 1 NC_008759.1 KEGG: bcn:Bcen_2888 hypothetical protein; hypothetical protein 94035 4685757 Pnap_4911 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973717.1 91204 D 365044 CDS YP_973718.1 121583282 4685758 94028..98260 1 NC_008759.1 PFAM: helicase domain protein; KEGG: bcn:Bcen_2887 helicase-like; helicase domain-containing protein 98260 4685758 Pnap_4912 Polaromonas naphthalenivorans CJ2 helicase domain-containing protein YP_973718.1 94028 D 365044 CDS YP_973719.1 121583283 4685755 98257..100521 1 NC_008759.1 KEGG: bcn:Bcen_2886 hypothetical protein; hypothetical protein 100521 4685755 Pnap_4913 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973719.1 98257 D 365044 CDS YP_973720.1 121583284 4685756 100508..101356 1 NC_008759.1 KEGG: rpb:RPB_2530 hypothetical protein; hypothetical protein 101356 4685756 Pnap_4914 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973720.1 100508 D 365044 CDS YP_973721.1 121583285 4685741 101403..101609 1 NC_008759.1 hypothetical protein 101609 4685741 Pnap_4915 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973721.1 101403 D 365044 CDS YP_973722.1 121583286 4685742 101619..103442 1 NC_008759.1 PFAM: N-6 DNA methylase; KEGG: syf:Synpcc7942_1060 type I restriction-modification; N-6 DNA methylase 103442 4685742 Pnap_4916 Polaromonas naphthalenivorans CJ2 N-6 DNA methylase YP_973722.1 101619 D 365044 CDS YP_973723.1 121583287 4685759 103439..104677 1 NC_008759.1 KEGG: mfa:Mfla_2606 restriction modification system DNA specificity domain; restriction modification system DNA specificity subunit 104677 4685759 Pnap_4917 Polaromonas naphthalenivorans CJ2 restriction modification system DNA specificity subunit YP_973723.1 103439 D 365044 CDS YP_973724.1 121583288 4685760 complement(104824..106113) 1 NC_008759.1 PFAM: HipA domain protein; KEGG: nwi:Nwi_2868 hypothetical protein; HipA domain-containing protein 106113 4685760 Pnap_4918 Polaromonas naphthalenivorans CJ2 HipA domain-containing protein YP_973724.1 104824 R 365044 CDS YP_973725.1 121583289 4685767 106646..106951 1 NC_008759.1 hypothetical protein 106951 4685767 Pnap_4919 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973725.1 106646 D 365044 CDS YP_973726.1 121583290 4685768 complement(107029..108429) 1 NC_008759.1 KEGG: dar:Daro_2234 hypothetical protein; hypothetical protein 108429 4685768 Pnap_4920 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973726.1 107029 R 365044 CDS YP_973727.1 121583291 4685761 108871..110001 1 NC_008759.1 KEGG: reu:Reut_C6002 hypothetical protein; hypothetical protein 110001 4685761 Pnap_4921 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973727.1 108871 D 365044 CDS YP_973728.1 121583292 4685762 110194..110793 1 NC_008759.1 KEGG: bcn:Bcen_5890 hypothetical protein; hypothetical protein 110793 4685762 Pnap_4922 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973728.1 110194 D 365044 CDS YP_973729.1 121583293 4685773 110826..111443 1 NC_008759.1 hypothetical protein 111443 4685773 Pnap_4923 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973729.1 110826 D 365044 CDS YP_973730.1 121583294 4685774 111722..114829 1 NC_008759.1 PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: syf:Synpcc7942_1065 DEAD/DEAH box helicase-like; hypothetical protein 114829 4685774 Pnap_4924 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973730.1 111722 D 365044 CDS YP_973731.1 121583295 4685771 114936..116378 1 NC_008759.1 KEGG: sma:SAV6943 hypothetical protein; hypothetical protein 116378 4685771 Pnap_4925 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973731.1 114936 D 365044 CDS YP_973732.1 121583296 4685772 116375..117106 1 NC_008759.1 KEGG: sma:SAV6944 hypothetical protein; hypothetical protein 117106 4685772 Pnap_4926 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973732.1 116375 D 365044 CDS YP_973733.1 121583297 4685777 117108..121433 1 NC_008759.1 KEGG: sco:SCO1407 hypothetical protein; hypothetical protein 121433 4685777 Pnap_4927 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973733.1 117108 D 365044 CDS YP_973734.1 121583298 4685778 121430..122431 1 NC_008759.1 hypothetical protein 122431 4685778 Pnap_4928 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973734.1 121430 D 365044 CDS YP_973735.1 121583299 4685781 complement(122911..123273) 1 NC_008759.1 hypothetical protein 123273 4685781 Pnap_4930 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973735.1 122911 R 365044 CDS YP_973736.1 121583300 4685764 125023..125409 1 NC_008759.1 hypothetical protein 125409 4685764 Pnap_4931 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973736.1 125023 D 365044 CDS YP_973737.1 121583301 4685731 126462..128318 1 NC_008759.1 PFAM: phage integrase family protein; KEGG: reu:Reut_C6164 phage integrase:phage integrase, N-terminal SAM-like; phage integrase family protein 128318 4685731 Pnap_4932 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_973737.1 126462 D 365044 CDS YP_973738.1 121583302 4685732 128539..129606 1 NC_008759.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pac:PPA1387 chromosome partitioning protein; cobyrinic acid a,c-diamide synthase 129606 4685732 Pnap_4933 Polaromonas naphthalenivorans CJ2 cobyrinic acid a,c-diamide synthase YP_973738.1 128539 D 365044 CDS YP_973739.1 121583303 4685775 129606..130601 1 NC_008759.1 TIGRFAM: parB-like partition proteins; KEGG: bpm:BURPS1710b_A1504 ParB family protein; parB-like partition proteins 130601 4685775 Pnap_4934 Polaromonas naphthalenivorans CJ2 parB-like partition proteins YP_973739.1 129606 D 365044 CDS YP_973740.1 121583304 4685782 132169..132564 1 NC_008759.1 KEGG: plu:plu4276 transposase, IS982 family; hypothetical protein 132564 4685782 Pnap_4936 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973740.1 132169 D 365044 CDS YP_973741.1 121583305 4685733 133149..133856 1 NC_008759.1 PFAM: transposase, IS4 family protein; KEGG: ftu:FTT1523c transposase; transposase, IS4 family protein 133856 4685733 Pnap_4937 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_973741.1 133149 D 365044 CDS YP_973742.1 121583306 4685734 134639..136054 1 NC_008759.1 PFAM: initiator RepB protein; KEGG: reu:Reut_C6161 hypothetical protein; initiator RepB protein 136054 4685734 Pnap_4938 Polaromonas naphthalenivorans CJ2 initiator RepB protein YP_973742.1 134639 D 365044 CDS YP_973743.1 121583307 4685680 136855..137772 1 NC_008759.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_B3024 putative phage integrase; phage integrase family protein 137772 4685680 Pnap_4939 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_973743.1 136855 D 365044 CDS YP_973744.1 121583308 4685681 137957..139345 1 NC_008759.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: eba:c2A308 hypothetical protein; filamentation induced by cAMP protein Fic 139345 4685681 Pnap_4940 Polaromonas naphthalenivorans CJ2 filamentation induced by cAMP protein Fic YP_973744.1 137957 D 365044 CDS YP_973745.1 121583309 4685721 complement(139571..140743) 1 NC_008759.1 KEGG: reu:Reut_C6002 hypothetical protein; hypothetical protein 140743 4685721 Pnap_4941 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973745.1 139571 R 365044 CDS YP_973746.1 121583310 4685788 141567..141950 1 NC_008759.1 PFAM: Lipocalin family protein; KEGG: bbr:BB4561 outer membrane lipoprotein; Lipocalin family protein 141950 4685788 Pnap_4942 Polaromonas naphthalenivorans CJ2 Lipocalin family protein YP_973746.1 141567 D 365044 CDS YP_973747.1 121583311 4685717 142007..142117 1 NC_008759.1 hypothetical protein 142117 4685717 Pnap_4943 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973747.1 142007 D 365044 CDS YP_973748.1 121583312 4685718 142355..142687 1 NC_008759.1 PFAM: protein of unknown function UPF0060; KEGG: rso:RS05320 probable transmembrane protein; hypothetical protein 142687 4685718 Pnap_4944 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973748.1 142355 D 365044 CDS YP_973749.1 121583313 4685805 142850..143791 1 NC_008759.1 KEGG: plt:Plut_0984 hypothetical protein; hypothetical protein 143791 4685805 Pnap_4945 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973749.1 142850 D 365044 CDS YP_973750.1 121583314 4685806 143958..144230 1 NC_008759.1 PFAM: protein of unknown function DUF1272; KEGG: bcn:Bcen_2053 protein of unknown function DUF1272; hypothetical protein 144230 4685806 Pnap_4946 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973750.1 143958 D 365044 CDS YP_973751.1 121583315 4685795 complement(144385..144930) 1 NC_008759.1 PFAM: 17 kDa surface antigen; KEGG: rso:RSc1027 probable transmembrane protein; 17 kDa surface antigen 144930 4685795 Pnap_4947 Polaromonas naphthalenivorans CJ2 17 kDa surface antigen YP_973751.1 144385 R 365044 CDS YP_973752.1 121583316 4685796 145208..145828 1 NC_008759.1 PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1421 thiopurine S-methyltransferase; thiopurine S-methyltransferase 145828 4685796 Pnap_4948 Polaromonas naphthalenivorans CJ2 thiopurine S-methyltransferase YP_973752.1 145208 D 365044 CDS YP_973753.1 121583317 4685751 145825..146178 1 NC_008759.1 KEGG: vvy:VV1848 hypothetical protein; hypothetical protein 146178 4685751 Pnap_4949 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973753.1 145825 D 365044 CDS YP_973754.1 121583318 4685752 146667..146858 1 NC_008759.1 KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 146858 4685752 Pnap_4950 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973754.1 146667 D 365044 CDS YP_973755.1 121583319 4685707 146891..147289 1 NC_008759.1 KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 147289 4685707 Pnap_4951 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973755.1 146891 D 365044 CDS YP_973756.1 121583320 4685708 147234..147560 1 NC_008759.1 KEGG: eba:ebA6355 transposase, IS4 family; IS4 family transposase 147560 4685708 Pnap_4952 Polaromonas naphthalenivorans CJ2 IS4 family transposase YP_973756.1 147234 D 365044 CDS YP_973757.1 121583321 4685787 148390..148899 1 NC_008759.1 KEGG: xac:XAC1911 hypothetical protein; hypothetical protein 148899 4685787 Pnap_4954 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973757.1 148390 D 365044 CDS YP_973758.1 121583322 4685780 148844..149683 1 NC_008759.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: xac:XAC1912 serine/threonine kinase; protein kinase 149683 4685780 Pnap_4955 Polaromonas naphthalenivorans CJ2 protein kinase YP_973758.1 148844 D 365044 CDS YP_973759.1 121583323 4685705 149694..150842 1 NC_008759.1 KEGG: xac:XAC1913 hypothetical protein; hypothetical protein 150842 4685705 Pnap_4956 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973759.1 149694 D 365044 CDS YP_973760.1 121583324 4685706 151158..152231 1 NC_008759.1 hypothetical protein 152231 4685706 Pnap_4957 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973760.1 151158 D 365044 CDS YP_973761.1 121583325 4685799 complement(152272..152757) 1 NC_008759.1 hypothetical protein 152757 4685799 Pnap_4958 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973761.1 152272 R 365044 CDS YP_973762.1 121583326 4685800 complement(153173..154750) 1 NC_008759.1 KEGG: bpm:BURPS1710b_0788 hypothetical protein; hypothetical protein 154750 4685800 Pnap_4959 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973762.1 153173 R 365044 CDS YP_973763.1 121583327 4685700 complement(154791..155435) 1 NC_008759.1 KEGG: reu:Reut_C6015 hypothetical protein; hypothetical protein 155435 4685700 Pnap_4960 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973763.1 154791 R 365044 CDS YP_973764.1 121583328 4685701 complement(155436..158180) 1 NC_008759.1 PFAM: UvrD/REP helicase; DNA topoisomerase, type IA, zn finger domain protein; KEGG: cps:CPS_2454 helicase IV; UvrD/REP helicase 158180 4685701 Pnap_4961 Polaromonas naphthalenivorans CJ2 UvrD/REP helicase YP_973764.1 155436 R 365044 CDS YP_973765.1 121583329 4685789 complement(158198..158662) 1 NC_008759.1 PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: gme:Gmet_1797 DNA topoisomerase I:restriction endonuclease; DNA topoisomerase type IA Zn finger domain-containing protein 158662 4685789 Pnap_4962 Polaromonas naphthalenivorans CJ2 DNA topoisomerase type IA Zn finger domain-containing protein YP_973765.1 158198 R 365044 CDS YP_973766.1 121583330 4685790 158808..159566 1 NC_008759.1 KEGG: pca:Pcar_0808 hypothetical protein; hypothetical protein 159566 4685790 Pnap_4963 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973766.1 158808 D 365044 CDS YP_973767.1 121583331 4685783 160251..161261 1 NC_008759.1 hypothetical protein 161261 4685783 Pnap_4964 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973767.1 160251 D 365044 CDS YP_973768.1 121583332 4685784 complement(161630..164164) 1 NC_008759.1 hypothetical protein 164164 4685784 Pnap_4965 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973768.1 161630 R 365044 CDS YP_973769.1 121583333 4685739 complement(164161..165822) 1 NC_008759.1 hypothetical protein 165822 4685739 Pnap_4966 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973769.1 164161 R 365044 CDS YP_973770.1 121583334 4685740 complement(166119..167438) 1 NC_008759.1 hypothetical protein 167438 4685740 Pnap_4967 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973770.1 166119 R 365044 CDS YP_973771.1 121583335 4685765 168156..168407 1 NC_008759.1 hypothetical protein 168407 4685765 Pnap_4968 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973771.1 168156 D 365044 CDS YP_973772.1 121583336 4685766 168693..169091 1 NC_008759.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: bba:Bd0303 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor 169091 4685766 Pnap_4969 Polaromonas naphthalenivorans CJ2 GreA/GreB family elongation factor YP_973772.1 168693 D 365044 CDS YP_973773.1 121583337 4685791 169246..170190 1 NC_008759.1 hypothetical protein 170190 4685791 Pnap_4970 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973773.1 169246 D 365044 CDS YP_973774.1 121583338 4685792 170407..170754 1 NC_008759.1 hypothetical protein 170754 4685792 Pnap_4971 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973774.1 170407 D 365044 CDS YP_973775.1 121583344 4685956 206..1255 1 NC_008760.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3827 uncharacterized protein UPF0065; hypothetical protein 1255 4685956 Pnap_4611 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973775.1 206 D 365044 CDS YP_973776.1 121583345 4685813 1252..1425 1 NC_008760.1 KEGG: pol:Bpro_3826 amidase; hypothetical protein 1425 4685813 Pnap_4612 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973776.1 1252 D 365044 CDS YP_973777.1 121583346 4685814 complement(1595..2566) 1 NC_008760.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A2914 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 2566 4685814 Pnap_4613 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_973777.1 1595 R 365044 CDS YP_973778.1 121583347 4685815 2676..4043 1 NC_008760.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 4043 4685815 Pnap_4614 Polaromonas naphthalenivorans CJ2 D-serine dehydratase YP_973778.1 2676 D 365044 CDS YP_973779.1 121583348 4685816 4080..5042 1 NC_008760.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1657 hypothetical protein; hypothetical protein 5042 4685816 Pnap_4615 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973779.1 4080 D 365044 CDS YP_973780.1 121583349 4685949 6239..7759 1 NC_008760.1 PFAM: Amidase; KEGG: pol:Bpro_3826 amidase; amidase 7759 4685949 Pnap_4617 Polaromonas naphthalenivorans CJ2 amidase YP_973780.1 6239 D 365044 CDS YP_973781.1 121583350 4685818 complement(8170..8457) 1 NC_008760.1 hypothetical protein 8457 4685818 Pnap_4618 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973781.1 8170 R 365044 CDS YP_973782.1 121583351 4685819 complement(8668..8961) 1 NC_008760.1 KEGG: pca:Pcar_0528 hypothetical protein; hypothetical protein 8961 4685819 Pnap_4619 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973782.1 8668 R 365044 CDS YP_973783.1 121583352 4685820 complement(8966..9190) 1 NC_008760.1 KEGG: vvu:VV10111 hypothetical protein; hypothetical protein 9190 4685820 Pnap_4620 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973783.1 8966 R 365044 CDS YP_973784.1 121583353 4685821 complement(9497..10084) 1 NC_008760.1 KEGG: bxe:Bxe_C0670 putative transposase; hypothetical protein 10084 4685821 Pnap_4621 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973784.1 9497 R 365044 CDS YP_973785.1 121583354 4685822 complement(10265..10789) 1 NC_008760.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_1907 transcriptional regulator, MarR family; MarR family transcriptional regulator 10789 4685822 Pnap_4622 Polaromonas naphthalenivorans CJ2 MarR family transcriptional regulator YP_973785.1 10265 R 365044 CDS YP_973786.1 121583355 4685823 complement(11157..12359) 1 NC_008760.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pol:Bpro_1908 oxidoreductase-like; oxidoreductase domain-containing protein 12359 4685823 Pnap_4623 Polaromonas naphthalenivorans CJ2 oxidoreductase domain-containing protein YP_973786.1 11157 R 365044 CDS YP_973787.1 121583356 4685824 complement(12359..13327) 1 NC_008760.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_1909 ferredoxin; ferredoxin 13327 4685824 Pnap_4624 Polaromonas naphthalenivorans CJ2 ferredoxin YP_973787.1 12359 R 365044 CDS YP_973788.1 121583357 4685825 complement(13367..14350) 1 NC_008760.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1911 uncharacterized protein UPF0065; hypothetical protein 14350 4685825 Pnap_4625 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973788.1 13367 R 365044 CDS YP_973789.1 121583358 4685826 complement(14401..15390) 1 NC_008760.1 KEGG: bpe:BP0683 4,5-dihydroxyphthalate decarboxylase; 4,5-dihydroxyphthalate decarboxylase 15390 4685826 Pnap_4626 Polaromonas naphthalenivorans CJ2 4,5-dihydroxyphthalate decarboxylase YP_973789.1 14401 R 365044 CDS YP_973790.1 121583359 4685827 complement(15393..16646) 1 NC_008760.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_1910 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 16646 4685827 Pnap_4627 Polaromonas naphthalenivorans CJ2 Rieske (2Fe-2S) domain-containing protein YP_973790.1 15393 R 365044 CDS YP_973791.1 121583360 4685828 complement(16736..17203) 1 NC_008760.1 TIGRFAM: hemerythrin-like metal-binding protein; KEGG: dar:Daro_2762 hemerythrin HHE cation binding region; hemerythrin-like metal-binding protein 17203 4685828 Pnap_4628 Polaromonas naphthalenivorans CJ2 hemerythrin-like metal-binding protein YP_973791.1 16736 R 365044 CDS YP_973792.1 121583361 4685829 17550..17975 1 NC_008760.1 hypothetical protein 17975 4685829 Pnap_4629 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973792.1 17550 D 365044 CDS YP_973793.1 121583362 4685830 complement(18006..18986) 1 NC_008760.1 PFAM: transposase, IS4 family protein; KEGG: mhu:Mhun_3123 transposase, IS4; transposase, IS4 family protein 18986 4685830 Pnap_4630 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_973793.1 18006 R 365044 CDS YP_973794.1 121583363 4685950 19862..20719 1 NC_008760.1 KEGG: rfr:Rfer_1318 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 20719 4685950 Pnap_4632 Polaromonas naphthalenivorans CJ2 nicotinate-nucleotide pyrophosphorylase YP_973794.1 19862 D 365044 CDS YP_973795.1 121583364 4685832 20814..21116 1 NC_008760.1 KEGG: pol:Bpro_5546 hypothetical protein; hypothetical protein 21116 4685832 Pnap_4633 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973795.1 20814 D 365044 CDS YP_973796.1 121583365 4685833 21119..21520 1 NC_008760.1 PFAM: helix-turn-helix domain protein; KEGG: pol:Bpro_5547 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 21520 4685833 Pnap_4634 Polaromonas naphthalenivorans CJ2 helix-turn-helix domain-containing protein YP_973796.1 21119 D 365044 CDS YP_973797.1 121583366 4685835 complement(25476..27233) 1 NC_008760.1 hypothetical protein 27233 4685835 Pnap_4637 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973797.1 25476 R 365044 CDS YP_973798.1 121583367 4685836 complement(27252..27452) 1 NC_008760.1 KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 27452 4685836 Pnap_4638 Polaromonas naphthalenivorans CJ2 transposase IS66 YP_973798.1 27252 R 365044 CDS YP_973799.1 121583368 4685951 27967..30036 1 NC_008760.1 PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; Recombinase; KEGG: ret:RHE_PA00038 probable insertion sequence transposase protein; recombinase 30036 4685951 Pnap_4640 Polaromonas naphthalenivorans CJ2 recombinase YP_973799.1 27967 D 365044 CDS YP_973800.1 121583369 4685838 complement(30049..31482) 1 NC_008760.1 PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 31482 4685838 Pnap_4641 Polaromonas naphthalenivorans CJ2 transposase IS66 YP_973800.1 30049 R 365044 CDS YP_973801.1 121583370 4685839 32075..33031 1 NC_008760.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 33031 4685839 Pnap_4642 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_973801.1 32075 D 365044 CDS YP_973802.1 121583371 4685840 33025..33267 1 NC_008760.1 KEGG: eba:ebA6355 transposase, IS4 family; hypothetical protein 33267 4685840 Pnap_4643 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973802.1 33025 D 365044 CDS YP_973803.1 121583372 4685841 complement(33334..34617) 1 NC_008760.1 PFAM: stress protein; SMART: von Willebrand factor, type A; KEGG: psp:PSPPH_0839 tellurium resistance protein, putative; stress protein 34617 4685841 Pnap_4644 Polaromonas naphthalenivorans CJ2 stress protein YP_973803.1 33334 R 365044 CDS YP_973804.1 121583373 4685842 complement(35121..35540) 1 NC_008760.1 KEGG: xom:XOO_1971 ISXo3 transposase orfB; hypothetical protein 35540 4685842 Pnap_4645 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973804.1 35121 R 365044 CDS YP_973805.1 121583374 4685843 complement(35589..35774) 1 NC_008760.1 KEGG: rso:RSp1136 ISRSO18-transposase protein; hypothetical protein 35774 4685843 Pnap_4646 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973805.1 35589 R 365044 CDS YP_973806.1 121583375 4685844 35810..37090 1 NC_008760.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSp0584 ISRSO9-transposase protein; transposase, IS4 family protein 37090 4685844 Pnap_4647 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_973806.1 35810 D 365044 CDS YP_973807.1 121583376 4685845 complement(37056..37760) 1 NC_008760.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 37760 4685845 Pnap_4648 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_973807.1 37056 R 365044 CDS YP_973808.1 121583377 4685846 complement(37863..38474) 1 NC_008760.1 KEGG: xcb:XC_0858 IS1477 transposase; IS1477 transposase 38474 4685846 Pnap_4649 Polaromonas naphthalenivorans CJ2 IS1477 transposase YP_973808.1 37863 R 365044 CDS YP_973809.1 121583378 4685847 complement(38507..38773) 1 NC_008760.1 PFAM: transposase IS3/IS911 family protein; KEGG: bpm:BURPS1710b_A1167 IS407A, transposase OrfA; transposase IS3/IS911 family protein 38773 4685847 Pnap_4650 Polaromonas naphthalenivorans CJ2 transposase IS3/IS911 family protein YP_973809.1 38507 R 365044 CDS YP_973810.1 121583379 4685848 complement(38842..39147) 1 NC_008760.1 hypothetical protein 39147 4685848 Pnap_4651 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973810.1 38842 R 365044 CDS YP_973811.1 121583380 4685849 39299..40243 1 NC_008760.1 KEGG: bxe:Bxe_A4308 hypothetical protein; hypothetical protein 40243 4685849 Pnap_4652 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973811.1 39299 D 365044 CDS YP_973812.1 121583381 4685850 40447..41526 1 NC_008760.1 PFAM: protein of unknown function DUF475; KEGG: tdn:Tmden_1846 protein of unknown function DUF475; hypothetical protein 41526 4685850 Pnap_4653 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973812.1 40447 D 365044 CDS YP_973813.1 121583382 4685851 41568..42146 1 NC_008760.1 PFAM: stress protein; KEGG: eba:p1B317 protein involved in tellurite resistance; stress protein 42146 4685851 Pnap_4654 Polaromonas naphthalenivorans CJ2 stress protein YP_973813.1 41568 D 365044 CDS YP_973814.1 121583383 4685852 42183..42758 1 NC_008760.1 PFAM: stress protein; KEGG: eba:p1B315 protein involved in tellurite resistance; stress protein 42758 4685852 Pnap_4655 Polaromonas naphthalenivorans CJ2 stress protein YP_973814.1 42183 D 365044 CDS YP_973815.1 121583384 4685952 43355..43936 1 NC_008760.1 PFAM: stress protein; KEGG: eba:p1B312 tellurium resistance protein; stress protein 43936 4685952 Pnap_4657 Polaromonas naphthalenivorans CJ2 stress protein YP_973815.1 43355 D 365044 CDS YP_973816.1 121583385 4685854 43944..44963 1 NC_008760.1 PFAM: protein of unknown function DUF201; KEGG: eba:p1B310 hypothetical protein; hypothetical protein 44963 4685854 Pnap_4658 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973816.1 43944 D 365044 CDS YP_973817.1 121583386 4685855 45017..46171 1 NC_008760.1 KEGG: eba:p1B308 hypothetical protein; hypothetical protein 46171 4685855 Pnap_4659 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973817.1 45017 D 365044 CDS YP_973818.1 121583387 4685856 46149..46904 1 NC_008760.1 KEGG: eba:p1B307 hypothetical protein; hypothetical protein 46904 4685856 Pnap_4660 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973818.1 46149 D 365044 CDS YP_973819.1 121583388 4685857 46901..47992 1 NC_008760.1 KEGG: eba:p1B306 hypothetical protein; hypothetical protein 47992 4685857 Pnap_4661 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973819.1 46901 D 365044 CDS YP_973820.1 121583389 4685858 47985..48932 1 NC_008760.1 KEGG: eba:p1B303 predicted ATP/GTP-binding protein; ATP/GTP-binding protein 48932 4685858 Pnap_4662 Polaromonas naphthalenivorans CJ2 ATP/GTP-binding protein YP_973820.1 47985 D 365044 CDS YP_973821.1 121583390 4685859 48977..50191 1 NC_008760.1 PFAM: stress protein; KEGG: eba:p1B301 tellurium resistance protein; stress protein 50191 4685859 Pnap_4663 Polaromonas naphthalenivorans CJ2 stress protein YP_973821.1 48977 D 365044 CDS YP_973822.1 121583391 4685860 complement(50202..51701) 1 NC_008760.1 SMART: serine/threonine protein kinase; KEGG: aci:ACIAD1964 conserved hypothetical protein; putative protein kinase; serine/threonine protein kinase 51701 4685860 Pnap_4664 Polaromonas naphthalenivorans CJ2 serine/threonine protein kinase YP_973822.1 50202 R 365044 CDS YP_973823.1 121583392 4685861 complement(51798..53528) 1 NC_008760.1 KEGG: yps:YPTB3466 hypothetical protein; hypothetical protein 53528 4685861 Pnap_4665 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973823.1 51798 R 365044 CDS YP_973824.1 121583393 4685862 complement(53531..54583) 1 NC_008760.1 PFAM: von Willebrand factor, type A; KEGG: yps:YPTB3465 hypothetical protein; von Willebrand factor, type A 54583 4685862 Pnap_4666 Polaromonas naphthalenivorans CJ2 von Willebrand factor, type A YP_973824.1 53531 R 365044 CDS YP_973825.1 121583394 4685863 complement(54668..55309) 1 NC_008760.1 PFAM: von Willebrand factor, type A; KEGG: aci:ACIAD1967 putative tellurium resistance protein (TerY-like); von Willebrand factor, type A 55309 4685863 Pnap_4667 Polaromonas naphthalenivorans CJ2 von Willebrand factor, type A YP_973825.1 54668 R 365044 CDS YP_973826.1 121583395 4685864 complement(55316..55957) 1 NC_008760.1 PFAM: stress protein; KEGG: aci:ACIAD1968 tellurium resistance protein; stress protein 55957 4685864 Pnap_4668 Polaromonas naphthalenivorans CJ2 stress protein YP_973826.1 55316 R 365044 CDS YP_973827.1 121583396 4685865 complement(55970..56608) 1 NC_008760.1 PFAM: von Willebrand factor, type A; KEGG: aci:ACIAD1969 tellurium resistance protein; von Willebrand factor, type A 56608 4685865 Pnap_4669 Polaromonas naphthalenivorans CJ2 von Willebrand factor, type A YP_973827.1 55970 R 365044 CDS YP_973828.1 121583397 4685866 complement(56855..57163) 1 NC_008760.1 hypothetical protein 57163 4685866 Pnap_4670 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973828.1 56855 R 365044 CDS YP_973829.1 121583398 4685867 complement(57275..57910) 1 NC_008760.1 KEGG: sde:Sde_3789 hypothetical protein; hypothetical protein 57910 4685867 Pnap_4671 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973829.1 57275 R 365044 CDS YP_973830.1 121583399 4685868 complement(57907..58269) 1 NC_008760.1 KEGG: sde:Sde_3788 hypothetical protein; hypothetical protein 58269 4685868 Pnap_4672 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973830.1 57907 R 365044 CDS YP_973831.1 121583400 4685869 complement(58280..58612) 1 NC_008760.1 hypothetical protein 58612 4685869 Pnap_4673 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973831.1 58280 R 365044 CDS YP_973832.1 121583401 4685870 complement(58612..59625) 1 NC_008760.1 PFAM: Curli production assembly/transport component CsgG; KEGG: sde:Sde_3786 uncharacterized protein involved in formation of curli polymers-like; curli production assembly/transport component CsgG 59625 4685870 Pnap_4674 Polaromonas naphthalenivorans CJ2 curli production assembly/transport component CsgG YP_973832.1 58612 R 365044 CDS YP_973833.1 121583402 4685871 complement(59744..60235) 1 NC_008760.1 KEGG: rme:Rmet_5344 hypothetical protein; hypothetical protein 60235 4685871 Pnap_4675 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973833.1 59744 R 365044 CDS YP_973834.1 121583403 4685872 60390..60749 1 NC_008760.1 KEGG: rme:Rmet_5343 hypothetical protein; hypothetical protein 60749 4685872 Pnap_4676 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973834.1 60390 D 365044 CDS YP_973835.1 121583404 4685873 complement(60764..61114) 1 NC_008760.1 PFAM: transposase, IS4 family protein; KEGG: neu:NE2446 transposase IS4 family; transposase, IS4 family protein 61114 4685873 Pnap_4677 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_973835.1 60764 R 365044 CDS YP_973836.1 121583405 4685953 61667..61933 1 NC_008760.1 KEGG: dar:Daro_1366 hypothetical protein; hypothetical protein 61933 4685953 Pnap_4679 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973836.1 61667 D 365044 CDS YP_973837.1 121583406 4685875 62434..62937 1 NC_008760.1 KEGG: reu:Reut_A0258 hypothetical protein; hypothetical protein 62937 4685875 Pnap_4680 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973837.1 62434 D 365044 CDS YP_973838.1 121583407 4685876 63330..63785 1 NC_008760.1 hypothetical protein 63785 4685876 Pnap_4681 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973838.1 63330 D 365044 CDS YP_973839.1 121583408 4685877 63782..64255 1 NC_008760.1 hypothetical protein 64255 4685877 Pnap_4682 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973839.1 63782 D 365044 CDS YP_973840.1 121583409 4685878 64442..64915 1 NC_008760.1 hypothetical protein 64915 4685878 Pnap_4683 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973840.1 64442 D 365044 CDS YP_973841.1 121583410 4685879 64908..65852 1 NC_008760.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: pfo:Pfl_3893 ADP-ribosylation/crystallin J1; ADP-ribosyl-(dinitrogen reductase) hydrolase 65852 4685879 Pnap_4684 Polaromonas naphthalenivorans CJ2 ADP-ribosyl-(dinitrogen reductase) hydrolase YP_973841.1 64908 D 365044 CDS YP_973842.1 121583411 4685880 65962..66531 1 NC_008760.1 KEGG: gme:Gmet_0792 hypothetical protein; hypothetical protein 66531 4685880 Pnap_4685 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973842.1 65962 D 365044 CDS YP_973843.1 121583412 4685881 complement(66643..67548) 1 NC_008760.1 PFAM: TniB family protein; KEGG: bcn:Bcen_4904 TniB; TniB family protein 67548 4685881 Pnap_4686 Polaromonas naphthalenivorans CJ2 TniB family protein YP_973843.1 66643 R 365044 CDS YP_973844.1 121583413 4685882 complement(67549..68055) 1 NC_008760.1 KEGG: nha:Nham_4579 integrase, catalytic region; integrase, catalytic region 68055 4685882 Pnap_4687 Polaromonas naphthalenivorans CJ2 integrase, catalytic region YP_973844.1 67549 R 365044 CDS YP_973845.1 121583414 4685883 complement(68146..69294) 1 NC_008760.1 PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region; integrase catalytic subunit 69294 4685883 Pnap_4688 Polaromonas naphthalenivorans CJ2 integrase catalytic subunit YP_973845.1 68146 R 365044 CDS YP_973846.1 121583415 4685884 69633..70439 1 NC_008760.1 hypothetical protein 70439 4685884 Pnap_4689 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973846.1 69633 D 365044 CDS YP_973847.1 121583416 4685885 complement(70526..70747) 1 NC_008760.1 PFAM: protein of unknown function DUF465; KEGG: cvi:CV3311 hypothetical protein; hypothetical protein 70747 4685885 Pnap_4690 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973847.1 70526 R 365044 CDS YP_973848.1 121583417 4685886 71222..73051 1 NC_008760.1 PFAM: phage integrase family protein; KEGG: rme:Rmet_6086 phage integrase; phage integrase family protein 73051 4685886 Pnap_4691 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_973848.1 71222 D 365044 CDS YP_973849.1 121583418 4685887 complement(73475..74488) 1 NC_008760.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: xcv:XCVd0002 replication protein B; parB-like partition proteins 74488 4685887 Pnap_4692 Polaromonas naphthalenivorans CJ2 parB-like partition proteins YP_973849.1 73475 R 365044 CDS YP_973850.1 121583419 4685888 complement(74464..75657) 1 NC_008760.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: eba:p2A292 partitioning protein, ParA; cobyrinic acid a,c-diamide synthase 75657 4685888 Pnap_4693 Polaromonas naphthalenivorans CJ2 cobyrinic acid a,c-diamide synthase YP_973850.1 74464 R 365044 CDS YP_973851.1 121583420 4685889 76069..77499 1 NC_008760.1 PFAM: initiator RepB protein; KEGG: bcn:Bcen_5164 hypothetical protein; initiator RepB protein 77499 4685889 Pnap_4694 Polaromonas naphthalenivorans CJ2 initiator RepB protein YP_973851.1 76069 D 365044 CDS YP_973852.1 121583421 4685890 complement(77991..78503) 1 NC_008760.1 hypothetical protein 78503 4685890 Pnap_4695 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973852.1 77991 R 365044 CDS YP_973853.1 121583422 4685891 78617..79819 1 NC_008760.1 PFAM: beta-lactamase domain protein; KEGG: reu:Reut_B4274 beta-lactamase-like; beta-lactamase domain-containing protein 79819 4685891 Pnap_4696 Polaromonas naphthalenivorans CJ2 beta-lactamase domain-containing protein YP_973853.1 78617 D 365044 CDS YP_973854.1 121583423 4685892 80148..80435 1 NC_008760.1 hypothetical protein 80435 4685892 Pnap_4697 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973854.1 80148 D 365044 CDS YP_973855.1 121583424 4685893 80432..81538 1 NC_008760.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: nar:Saro_0133 ParB-like partition proteins; parB-like partition proteins 81538 4685893 Pnap_4698 Polaromonas naphthalenivorans CJ2 parB-like partition proteins YP_973855.1 80432 D 365044 CDS YP_973856.1 121583425 4685954 83264..84334 1 NC_008760.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 84334 4685954 Pnap_4700 Polaromonas naphthalenivorans CJ2 phospho-2-dehydro-3-deoxyheptonate aldolase YP_973856.1 83264 D 365044 CDS YP_973857.1 121583426 4685955 complement(84547..84747) 1 NC_008760.1 KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 84747 4685955 Pnap_4702 Polaromonas naphthalenivorans CJ2 transposase IS66 YP_973857.1 84547 R 365044 CDS YP_973858.1 121583427 4685957 85262..87331 1 NC_008760.1 PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; Recombinase; KEGG: ret:RHE_PA00038 probable insertion sequence transposase protein; recombinase 87331 4685957 Pnap_4704 Polaromonas naphthalenivorans CJ2 recombinase YP_973858.1 85262 D 365044 CDS YP_973859.1 121583428 4685897 complement(87344..88750) 1 NC_008760.1 PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 88750 4685897 Pnap_4705 Polaromonas naphthalenivorans CJ2 transposase IS66 YP_973859.1 87344 R 365044 CDS YP_973860.1 121583429 4685898 complement(88833..89174) 1 NC_008760.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_3060 IS66 Orf2 like; IS66 Orf2 family protein 89174 4685898 Pnap_4706 Polaromonas naphthalenivorans CJ2 IS66 Orf2 family protein YP_973860.1 88833 R 365044 CDS YP_973861.1 121583430 4685899 complement(89171..89563) 1 NC_008760.1 PFAM: transposase IS3/IS911 family protein; KEGG: hypothetical protein; transposase IS3/IS911 family protein 89563 4685899 Pnap_4707 Polaromonas naphthalenivorans CJ2 transposase IS3/IS911 family protein YP_973861.1 89171 R 365044 CDS YP_973862.1 121583431 4685900 89634..89930 1 NC_008760.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 89930 4685900 Pnap_4708 Polaromonas naphthalenivorans CJ2 IS66 Orf2 family protein YP_973862.1 89634 D 365044 CDS YP_973863.1 121583432 4685901 90013..91506 1 NC_008760.1 PFAM: transposase IS66; KEGG: bxe:Bxe_A2416 transposase ISPpu14 orf3 like, IS66 family; transposase IS66 91506 4685901 Pnap_4709 Polaromonas naphthalenivorans CJ2 transposase IS66 YP_973863.1 90013 D 365044 CDS YP_973864.1 121583433 4685902 91671..92828 1 NC_008760.1 KEGG: ana:alr5232 unknown protein; hypothetical protein 92828 4685902 Pnap_4710 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973864.1 91671 D 365044 CDS YP_973865.1 121583434 4685903 92961..93977 1 NC_008760.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_5572 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 93977 4685903 Pnap_4711 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_973865.1 92961 D 365044 CDS YP_973866.1 121583435 4685904 complement(94695..95765) 1 NC_008760.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_2845 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 95765 4685904 Pnap_4712 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_973866.1 94695 R 365044 CDS YP_973867.1 121583436 4685958 97342..98019 1 NC_008760.1 hypothetical protein 98019 4685958 Pnap_4714 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973867.1 97342 D 365044 CDS YP_973868.1 121583437 4685906 98166..98402 1 NC_008760.1 KEGG: bur:Bcep18194_A3351 histone-like nucleoid-structuring protein H-NS; hypothetical protein 98402 4685906 Pnap_4715 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973868.1 98166 D 365044 CDS YP_973869.1 121583438 4685907 complement(98742..99356) 1 NC_008760.1 PFAM: protein of unknown function DUF1326; KEGG: mlo:mll4476 hypothetical protein; hypothetical protein 99356 4685907 Pnap_4716 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973869.1 98742 R 365044 CDS YP_973870.1 121583439 4685908 99489..100283 1 NC_008760.1 KEGG: pol:Bpro_1844 hypothetical protein; hypothetical protein 100283 4685908 Pnap_4717 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973870.1 99489 D 365044 CDS YP_973871.1 121583440 4685909 complement(100462..100899) 1 NC_008760.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_2826 UspA; UspA domain-containing protein 100899 4685909 Pnap_4718 Polaromonas naphthalenivorans CJ2 UspA domain-containing protein YP_973871.1 100462 R 365044 CDS YP_973872.1 121583441 4685910 complement(100931..101047) 1 NC_008760.1 PFAM: protein of unknown function DUF1458; KEGG: pol:Bpro_0507 protein of unknown function DUF1458; hypothetical protein 101047 4685910 Pnap_4719 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973872.1 100931 R 365044 CDS YP_973873.1 121583442 4685911 101362..101760 1 NC_008760.1 KEGG: bxe:Bxe_A3008 hypothetical protein; hypothetical protein 101760 4685911 Pnap_4720 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973873.1 101362 D 365044 CDS YP_973874.1 121583443 4685912 complement(102528..104099) 1 NC_008760.1 PFAM: FAD dependent oxidoreductase; KEGG: sme:SMb20991 conserved hypothetical protein, similar to Y20992, slightly similar to monooxygenase; FAD dependent oxidoreductase 104099 4685912 Pnap_4721 Polaromonas naphthalenivorans CJ2 FAD dependent oxidoreductase YP_973874.1 102528 R 365044 CDS YP_973875.1 121583444 4685913 complement(104435..104677) 1 NC_008760.1 PFAM: phage Tail Collar domain protein; KEGG: pen:PSEEN0745 phage tail collar; phage tail collar domain-containing protein 104677 4685913 Pnap_4722 Polaromonas naphthalenivorans CJ2 phage tail collar domain-containing protein YP_973875.1 104435 R 365044 CDS YP_973876.1 121583445 4685914 complement(104745..104939) 1 NC_008760.1 KEGG: ana:alr9024 transposase; transposase 104939 4685914 Pnap_4723 Polaromonas naphthalenivorans CJ2 transposase YP_973876.1 104745 R 365044 CDS YP_973877.1 121583446 4685915 complement(105302..105964) 1 NC_008760.1 KEGG: mma:MM3344 transposase; transposase 105964 4685915 Pnap_4724 Polaromonas naphthalenivorans CJ2 transposase YP_973877.1 105302 R 365044 CDS YP_973878.1 121583447 4685916 complement(105961..106434) 1 NC_008760.1 KEGG: mma:MM3343 transposase; transposase 106434 4685916 Pnap_4725 Polaromonas naphthalenivorans CJ2 transposase YP_973878.1 105961 R 365044 CDS YP_973879.1 121583448 4685917 106744..107763 1 NC_008760.1 KEGG: bxe:Bxe_A4308 hypothetical protein; hypothetical protein 107763 4685917 Pnap_4726 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973879.1 106744 D 365044 CDS YP_973880.1 121583449 4685918 108201..108569 1 NC_008760.1 KEGG: gvi:gll2960 hypothetical protein; hypothetical protein 108569 4685918 Pnap_4727 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973880.1 108201 D 365044 CDS YP_973881.1 121583450 4685919 108970..109374 1 NC_008760.1 PFAM: protein of unknown function DUF1486; KEGG: eba:ebA463 hypothetical protein; hypothetical protein 109374 4685919 Pnap_4728 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973881.1 108970 D 365044 CDS YP_973882.1 121583451 4685920 complement(109715..111052) 1 NC_008760.1 KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 111052 4685920 Pnap_4729 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973882.1 109715 R 365044 CDS YP_973883.1 121583452 4685921 111604..111969 1 NC_008760.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pol:Bpro_3984 histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 111969 4685921 Pnap_4730 Polaromonas naphthalenivorans CJ2 histone family protein nucleoid-structuring protein H-NS YP_973883.1 111604 D 365044 CDS YP_973884.1 121583453 4685959 112857..113309 1 NC_008760.1 PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 113309 4685959 Pnap_4731 Polaromonas naphthalenivorans CJ2 RNP-1 like RNA-binding protein YP_973884.1 112857 D 365044 CDS YP_973885.1 121583454 4685923 113643..114518 1 NC_008760.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sal:Sala_1100 glutathione S-transferase-like protein; glutathione S-transferase domain-containing protein 114518 4685923 Pnap_4732 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_973885.1 113643 D 365044 CDS YP_973886.1 121583455 4685924 114574..115206 1 NC_008760.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sil:SPO0563 glutathione S-transferase, putative; glutathione S-transferase domain-containing protein 115206 4685924 Pnap_4733 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_973886.1 114574 D 365044 CDS YP_973887.1 121583456 4685925 115396..115755 1 NC_008760.1 hypothetical protein 115755 4685925 Pnap_4734 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973887.1 115396 D 365044 CDS YP_973888.1 121583457 4685926 complement(115959..117353) 1 NC_008760.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_C0670 putative transposase; integrase catalytic subunit 117353 4685926 Pnap_4735 Polaromonas naphthalenivorans CJ2 integrase catalytic subunit YP_973888.1 115959 R 365044 CDS YP_973889.1 121583458 4685927 complement(117479..118054) 1 NC_008760.1 KEGG: rba:RB10556 hypothetical protein-signal peptide prediction; hypothetical protein 118054 4685927 Pnap_4736 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973889.1 117479 R 365044 CDS YP_973890.1 121583459 4685928 complement(118166..120811) 1 NC_008760.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bxe:Bxe_A0918 excinuclease ABC, A subunit; excinuclease ABC, A subunit 120811 4685928 Pnap_4737 Polaromonas naphthalenivorans CJ2 excinuclease ABC, A subunit YP_973890.1 118166 R 365044 CDS YP_973891.1 121583460 4685929 complement(121179..122066) 1 NC_008760.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: reu:Reut_B4855 protein of unknown function DUF6, transmembrane; hypothetical protein 122066 4685929 Pnap_4738 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973891.1 121179 R 365044 CDS YP_973892.1 121583461 4685930 complement(122648..122797) 1 NC_008760.1 hypothetical protein 122797 4685930 Pnap_4739 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973892.1 122648 R 365044 CDS YP_973893.1 121583462 4685931 122894..123970 1 NC_008760.1 KEGG: bja:blr1916 putative transposase; putative transposase 123970 4685931 Pnap_4740 Polaromonas naphthalenivorans CJ2 putative transposase YP_973893.1 122894 D 365044 CDS YP_973894.1 121583463 4685932 124482..125465 1 NC_008760.1 PFAM: putative transposase; KEGG: sfx:S2705 putative transposase; putative transposase 125465 4685932 Pnap_4741 Polaromonas naphthalenivorans CJ2 putative transposase YP_973894.1 124482 D 365044 CDS YP_973895.1 121583464 4685933 125630..126475 1 NC_008760.1 PFAM: regulatory proteins, IclR; KEGG: rme:Rmet_0082 transcriptional regulator, IclR family; regulatory proteins, IclR 126475 4685933 Pnap_4742 Polaromonas naphthalenivorans CJ2 regulatory proteins, IclR YP_973895.1 125630 D 365044 CDS YP_973896.1 121583465 4685934 126592..127617 1 NC_008760.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rso:RSc1823 probable nitrilase protein; Nitrilase 127617 4685934 Pnap_4743 Polaromonas naphthalenivorans CJ2 Nitrilase YP_973896.1 126592 D 365044 CDS YP_973897.1 121583466 4685935 127663..128835 1 NC_008760.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_1622 extracellular ligand-binding receptor; extracellular ligand-binding receptor 128835 4685935 Pnap_4744 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_973897.1 127663 D 365044 CDS YP_973898.1 121583467 4685936 128937..129800 1 NC_008760.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1621 inner-membrane translocator; inner-membrane translocator 129800 4685936 Pnap_4745 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_973898.1 128937 D 365044 CDS YP_973899.1 121583468 4685937 129850..130872 1 NC_008760.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1620 inner-membrane translocator; inner-membrane translocator 130872 4685937 Pnap_4746 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_973899.1 129850 D 365044 CDS YP_973900.1 121583469 4685938 130865..131626 1 NC_008760.1 PFAM: ABC transporter related; KEGG: pol:Bpro_2988 ABC transporter related; ABC transporter related 131626 4685938 Pnap_4747 Polaromonas naphthalenivorans CJ2 ABC transporter related YP_973900.1 130865 D 365044 CDS YP_973901.1 121583470 4685939 131719..132432 1 NC_008760.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1618 ABC transporter related; ABC transporter related 132432 4685939 Pnap_4748 Polaromonas naphthalenivorans CJ2 ABC transporter related YP_973901.1 131719 D 365044 CDS YP_973902.1 121583471 4685940 complement(132559..132969) 1 NC_008760.1 KEGG: nmu:Nmul_A0376 tetratricopeptide TPR_4; hypothetical protein 132969 4685940 Pnap_4749 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973902.1 132559 R 365044 CDS YP_973903.1 121583472 4685941 complement(133049..133330) 1 NC_008760.1 KEGG: ppr:PBPRA0512 putative transposase; putative transposase 133330 4685941 Pnap_4750 Polaromonas naphthalenivorans CJ2 putative transposase YP_973903.1 133049 R 365044 CDS YP_973904.1 121583473 4685942 complement(133591..134115) 1 NC_008760.1 KEGG: pol:Bpro_3862 hypothetical protein; hypothetical protein 134115 4685942 Pnap_4751 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973904.1 133591 R 365044 CDS YP_973905.1 121583474 4685943 complement(134363..135688) 1 NC_008760.1 KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 135688 4685943 Pnap_4752 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973905.1 134363 R 365044 CDS YP_973906.1 121583475 4685944 complement(135818..135958) 1 NC_008760.1 PFAM: protein of unknown function DUF1458; KEGG: pol:Bpro_0507 protein of unknown function DUF1458; hypothetical protein 135958 4685944 Pnap_4753 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973906.1 135818 R 365044 CDS YP_973907.1 121583476 4685945 complement(136243..137340) 1 NC_008760.1 PFAM: regulatory protein GntR, HTH; KEGG: bpa:BPP1291 putative GntR-family transcriptional regulator; GntR family transcriptional regulator 137340 4685945 Pnap_4754 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_973907.1 136243 R 365044 CDS YP_973908.1 121583477 4685961 complement(138953..141700) 1 NC_008760.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 141700 4685961 Pnap_4757 Polaromonas naphthalenivorans CJ2 2-oxoacid dehydrogenase subunit E1 YP_973908.1 138953 R 365044 CDS YP_973909.1 121583478 4685947 141753..141968 1 NC_008760.1 SMART: regulatory protein, AsnC/Lrp family; KEGG: bbr:BB3671 AsnC-family transcriptional regulator; AsnC family transcriptional regulator 141968 4685947 Pnap_4758 Polaromonas naphthalenivorans CJ2 AsnC family transcriptional regulator YP_973909.1 141753 D 365044 CDS YP_973910.1 121583479 4685948 complement(142059..142523) 1 NC_008760.1 PFAM: regulatory protein, AsnC/Lrp family; regulatory protein, ArsR; KEGG: pol:Bpro_3829 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 142523 4685948 Pnap_4759 Polaromonas naphthalenivorans CJ2 AsnC family transcriptional regulator YP_973910.1 142059 R 365044 CDS YP_973911.1 121583485 4686002 1158..1565 1 NC_008761.1 hypothetical protein 1565 4686002 Pnap_4760 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973911.1 1158 D 365044 CDS YP_973912.1 121583486 4685993 complement(1583..2455) 1 NC_008761.1 KEGG: tcr:504239.220 mucin-associated surface protein (MASP) Pfam: Vicilin_N PROSITE: ALA_RICH CHEMOTAXIS_TRANSDUC_2; mucin-associated surface protein 2455 4685993 Pnap_4761 Polaromonas naphthalenivorans CJ2 mucin-associated surface protein YP_973912.1 1583 R 365044 CDS YP_973913.1 121583487 4685994 3682..3879 1 NC_008761.1 hypothetical protein 3879 4685994 Pnap_4762 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973913.1 3682 D 365044 CDS YP_973914.1 121583488 4685962 complement(4046..4534) 1 NC_008761.1 KEGG: xac:XACb0027 hypothetical protein; hypothetical protein 4534 4685962 Pnap_4763 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973914.1 4046 R 365044 CDS YP_973915.1 121583489 4685963 complement(4584..5000) 1 NC_008761.1 PFAM: PilT protein domain protein; KEGG: xfa:XF1589 plasmid stabilization protein; PilT domain-containing protein 5000 4685963 Pnap_4764 Polaromonas naphthalenivorans CJ2 PilT domain-containing protein YP_973915.1 4584 R 365044 CDS YP_973916.1 121583490 4685964 complement(4997..5251) 1 NC_008761.1 KEGG: xfa:XF1590 plasmid stabilization protein; plasmid stabilization protein 5251 4685964 Pnap_4765 Polaromonas naphthalenivorans CJ2 plasmid stabilization protein YP_973916.1 4997 R 365044 CDS YP_973917.1 121583491 4685987 5451..5756 1 NC_008761.1 KEGG: pol:Bpro_3013 hypothetical protein; hypothetical protein 5756 4685987 Pnap_4766 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973917.1 5451 D 365044 CDS YP_973918.1 121583492 4685988 complement(5856..6098) 1 NC_008761.1 PFAM: phage Tail Collar domain protein; KEGG: ana:alr4706 unknown protein; phage tail collar domain-containing protein 6098 4685988 Pnap_4767 Polaromonas naphthalenivorans CJ2 phage tail collar domain-containing protein YP_973918.1 5856 R 365044 CDS YP_973919.1 121583493 4685989 6621..7325 1 NC_008761.1 KEGG: rme:Rmet_3749 hypothetical protein; hypothetical protein 7325 4685989 Pnap_4768 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973919.1 6621 D 365044 CDS YP_973920.1 121583494 4685968 7325..7567 1 NC_008761.1 KEGG: psp:PSPPH_B0059 ExeA-like protein; ExeA-like protein 7567 4685968 Pnap_4769 Polaromonas naphthalenivorans CJ2 ExeA-like protein YP_973920.1 7325 D 365044 CDS YP_973921.1 121583495 4685969 7747..8313 1 NC_008761.1 KEGG: xac:XAC2430 Tn5044 transposase; Tn5044 transposase 8313 4685969 Pnap_4770 Polaromonas naphthalenivorans CJ2 Tn5044 transposase YP_973921.1 7747 D 365044 CDS YP_973922.1 121583496 4685970 complement(8670..9197) 1 NC_008761.1 hypothetical protein 9197 4685970 Pnap_4771 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973922.1 8670 R 365044 CDS YP_973923.1 121583497 4685975 complement(9239..10309) 1 NC_008761.1 KEGG: cvi:CV0729 poly (3-hydroxybutyrate) depolymerase; poly (3-hydroxybutyrate) depolymerase 10309 4685975 Pnap_4772 Polaromonas naphthalenivorans CJ2 poly (3-hydroxybutyrate) depolymerase YP_973923.1 9239 R 365044 CDS YP_973924.1 121583498 4685976 complement(10458..10760) 1 NC_008761.1 hypothetical protein 10760 4685976 Pnap_4773 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973924.1 10458 R 365044 CDS YP_973925.1 121583499 4685977 complement(11708..12745) 1 NC_008761.1 PFAM: TrfA family protein; KEGG: gsu:GSU2175 TrfA-related protein; TrfA family protein 12745 4685977 Pnap_4774 Polaromonas naphthalenivorans CJ2 TrfA family protein YP_973925.1 11708 R 365044 CDS YP_973926.1 121583500 4686006 complement(12820..13128) 1 NC_008761.1 KEGG: xcv:XCVc0004 hypothetical protein; hypothetical protein 13128 4686006 Pnap_4775 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973926.1 12820 R 365044 CDS YP_973927.1 121583501 4686007 complement(13125..13754) 1 NC_008761.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: xcv:XCVc0005 putative partition protein; cobyrinic acid a,c-diamide synthase 13754 4686007 Pnap_4776 Polaromonas naphthalenivorans CJ2 cobyrinic acid a,c-diamide synthase YP_973927.1 13125 R 365044 CDS YP_973928.1 121583502 4686008 14048..15601 1 NC_008761.1 PFAM: N-6 DNA methylase; KEGG: pol:Bpro_1940 N-6 DNA methylase; N-6 DNA methylase 15601 4686008 Pnap_4777 Polaromonas naphthalenivorans CJ2 N-6 DNA methylase YP_973928.1 14048 D 365044 CDS YP_973929.1 121583503 4685995 15591..16838 1 NC_008761.1 PFAM: restriction modification system DNA specificity domain; KEGG: mca:MCA0836 type I restriction-modification system, S subunit, EcoA family; restriction modification system DNA specificity subunit 16838 4685995 Pnap_4778 Polaromonas naphthalenivorans CJ2 restriction modification system DNA specificity subunit YP_973929.1 15591 D 365044 CDS YP_973930.1 121583504 4685996 16835..17920 1 NC_008761.1 PFAM: protein of unknown function DUF1016; KEGG: hypothetical protein; hypothetical protein 17920 4685996 Pnap_4779 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973930.1 16835 D 365044 CDS YP_973931.1 121583505 4685971 18013..18414 1 NC_008761.1 PFAM: protein of unknown function DUF1311; KEGG: cvi:CV4287 hypothetical protein; hypothetical protein 18414 4685971 Pnap_4780 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973931.1 18013 D 365044 CDS YP_973932.1 121583506 4685972 18461..19348 1 NC_008761.1 hypothetical protein 19348 4685972 Pnap_4781 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973932.1 18461 D 365044 CDS YP_973933.1 121583507 4685973 19345..22434 1 NC_008761.1 KEGG: pol:Bpro_1944 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease 22434 4685973 Pnap_4782 Polaromonas naphthalenivorans CJ2 HsdR family type I site-specific deoxyribonuclease YP_973933.1 19345 D 365044 CDS YP_973934.1 121583508 4685965 complement(22591..23646) 1 NC_008761.1 KEGG: stt:t4254 hypothetical protein; hypothetical protein 23646 4685965 Pnap_4783 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973934.1 22591 R 365044 CDS YP_973935.1 121583509 4685966 complement(23770..24048) 1 NC_008761.1 KEGG: psb:Psyr_3719 hypothetical protein; hypothetical protein 24048 4685966 Pnap_4784 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973935.1 23770 R 365044 CDS YP_973936.1 121583510 4685967 complement(24090..24344) 1 NC_008761.1 KEGG: nwi:Nwi_0257 hypothetical protein; hypothetical protein 24344 4685967 Pnap_4785 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973936.1 24090 R 365044 CDS YP_973937.1 121583511 4685984 complement(24402..24602) 1 NC_008761.1 KEGG: dvu:DVU1704 hypothetical protein; hypothetical protein 24602 4685984 Pnap_4786 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973937.1 24402 R 365044 CDS YP_973938.1 121583512 4685985 complement(24931..25662) 1 NC_008761.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; IstB ATP binding domain-containing protein 25662 4685985 Pnap_4787 Polaromonas naphthalenivorans CJ2 IstB ATP binding domain-containing protein YP_973938.1 24931 R 365044 CDS YP_973939.1 121583513 4685986 complement(25704..27242) 1 NC_008761.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit 27242 4685986 Pnap_4788 Polaromonas naphthalenivorans CJ2 integrase catalytic subunit YP_973939.1 25704 R 365044 CDS YP_973940.1 121583514 4685997 27680..28204 1 NC_008761.1 KEGG: rsp:RSP_4245 hypothetical protein; hypothetical protein 28204 4685997 Pnap_4789 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973940.1 27680 D 365044 CDS YP_973941.1 121583515 4685998 28201..28617 1 NC_008761.1 KEGG: nha:Nham_1372 hypothetical protein; hypothetical protein 28617 4685998 Pnap_4790 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973941.1 28201 D 365044 CDS YP_973942.1 121583516 4685999 28607..29371 1 NC_008761.1 PFAM: protein of unknown function DUF955; KEGG: rsp:RSP_4244 hypothetical protein; hypothetical protein 29371 4685999 Pnap_4791 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973942.1 28607 D 365044 CDS YP_973943.1 121583517 4685981 complement(29627..30814) 1 NC_008761.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: xcb:XC_2075 transcriptional regulator, HTH_3 family; hypothetical protein 30814 4685981 Pnap_4792 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973943.1 29627 R 365044 CDS YP_973944.1 121583518 4685982 complement(30822..31463) 1 NC_008761.1 KEGG: hch:HCH_06284 hypothetical protein; hypothetical protein 31463 4685982 Pnap_4793 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973944.1 30822 R 365044 CDS YP_973945.1 121583519 4685983 complement(31549..32130) 1 NC_008761.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: ecs:ECs5249 putative resolvase; resolvase domain-containing protein 32130 4685983 Pnap_4794 Polaromonas naphthalenivorans CJ2 resolvase domain-containing protein YP_973945.1 31549 R 365044 CDS YP_973946.1 121583520 4686012 complement(32650..38079) 1 NC_008761.1 KEGG: noc:Noc_0639 hypothetical protein; hypothetical protein 38079 4686012 Pnap_4795 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973946.1 32650 R 365044 CDS YP_973947.1 121583521 4686013 38473..38901 1 NC_008761.1 KEGG: pfo:Pfl_4900 hypothetical protein; hypothetical protein 38901 4686013 Pnap_4796 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973947.1 38473 D 365044 CDS YP_973948.1 121583522 4686014 38898..39350 1 NC_008761.1 KEGG: pfo:Pfl_4899 hypothetical protein; hypothetical protein 39350 4686014 Pnap_4797 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973948.1 38898 D 365044 CDS YP_973949.1 121583523 4685990 39355..40350 1 NC_008761.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: nmu:Nmul_A2012 phage integrase; phage integrase family protein 40350 4685990 Pnap_4798 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_973949.1 39355 D 365044 CDS YP_973950.1 121583524 4685991 40363..41442 1 NC_008761.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 41442 4685991 Pnap_4799 Polaromonas naphthalenivorans CJ2 DNA/RNA non-specific endonuclease YP_973950.1 40363 D 365044 CDS YP_973951.1 121583525 4685992 41897..49429 1 NC_008761.1 PFAM: zinc finger, CHC2-family protein; KEGG: zmo:ZMO1622 DNA primase; zinc finger, CHC2-family protein 49429 4685992 Pnap_4800 Polaromonas naphthalenivorans CJ2 zinc finger, CHC2-family protein YP_973951.1 41897 D 365044 CDS YP_973952.1 121583526 4685978 49675..51168 1 NC_008761.1 PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5089 transposase, IS4; transposase, IS4 family protein 51168 4685978 Pnap_4801 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_973952.1 49675 D 365044 CDS YP_973953.1 121583527 4685979 complement(51354..51734) 1 NC_008761.1 PFAM: PilT protein domain protein; KEGG: pst:PSPTO_B0073 PIN domain protein; PilT domain-containing protein 51734 4685979 Pnap_4802 Polaromonas naphthalenivorans CJ2 PilT domain-containing protein YP_973953.1 51354 R 365044 CDS YP_973954.1 121583528 4685980 complement(51731..51937) 1 NC_008761.1 KEGG: plu:plu2369 hypothetical protein; hypothetical protein 51937 4685980 Pnap_4803 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973954.1 51731 R 365044 CDS YP_973955.1 121583529 4686003 complement(52074..53060) 1 NC_008761.1 hypothetical protein 53060 4686003 Pnap_4804 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973955.1 52074 R 365044 CDS YP_973956.1 121583530 4686004 complement(53528..54088) 1 NC_008761.1 PFAM: protein of unknown function DUF820; KEGG: ava:Ava_0371 protein of unknown function DUF820; hypothetical protein 54088 4686004 Pnap_4805 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973956.1 53528 R 365044 CDS YP_973957.1 121583531 4686005 complement(54174..55154) 1 NC_008761.1 KEGG: pol:Bpro_0367 hypothetical protein; hypothetical protein 55154 4686005 Pnap_4806 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973957.1 54174 R 365044 CDS YP_973958.1 121583532 4686009 55410..55634 1 NC_008761.1 SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0373 transcriptional regulator, Cro/CI family; helix-turn-helix domain-containing protein 55634 4686009 Pnap_4807 Polaromonas naphthalenivorans CJ2 helix-turn-helix domain-containing protein YP_973958.1 55410 D 365044 CDS YP_973959.1 121583533 4686010 complement(55758..56309) 1 NC_008761.1 hypothetical protein 56309 4686010 Pnap_4808 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973959.1 55758 R 365044 CDS YP_973960.1 121583534 4685974 57078..57341 1 NC_008761.1 KEGG: aci:ACIAD3407 hypothetical protein; hypothetical protein 57341 4685974 Pnap_4810 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973960.1 57078 D 365044 CDS YP_973961.1 121583535 4686000 complement(57390..57596) 1 NC_008761.1 KEGG: psp:PSPPH_B0005 transcriptional regulator, Cro/CI family; putative transcriptional regulator 57596 4686000 Pnap_4811 Polaromonas naphthalenivorans CJ2 putative transcriptional regulator YP_973961.1 57390 R 365044 CDS YP_973962.1 121583536 4686001 complement(57909..58718) 1 NC_008761.1 KEGG: bcn:Bcen_2656 hypothetical protein; hypothetical protein 58718 4686001 Pnap_4812 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973962.1 57909 R 365044 CDS YP_973963.1 121583544 4686031 join(21609..21611,1..1119) 1 NC_008762.1 KEGG: xft:PD0577 site-specific DNA-methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 1119 4686031 Pnap_4973 Polaromonas naphthalenivorans CJ2 DNA-cytosine methyltransferase YP_973963.1 21609 D 365044 CDS YP_973964.1 121583545 4686033 complement(1046..1798) 1 NC_008762.1 KEGG: cch:Cag_1630 hypothetical protein; hypothetical protein 1798 4686033 Pnap_4974 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973964.1 1046 R 365044 CDS YP_973965.1 121583546 4686030 complement(1798..2982) 1 NC_008762.1 PFAM: protein of unknown function DUF262; KEGG: rpb:RPB_2195 hypothetical protein; hypothetical protein 2982 4686030 Pnap_4975 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973965.1 1798 R 365044 CDS YP_973966.1 121583547 4686019 complement(3010..3630) 1 NC_008762.1 PFAM: peptidase S24, S26A and S26B; KEGG: ngo:NGO0479 putative lambda repressor protein CI, putative phage associated protein; putative phage repressor 3630 4686019 Pnap_4976 Polaromonas naphthalenivorans CJ2 putative phage repressor YP_973966.1 3010 R 365044 CDS YP_973967.1 121583548 4686016 complement(3998..4507) 1 NC_008762.1 KEGG: bur:Bcep18194_A4982 hypothetical protein; hypothetical protein 4507 4686016 Pnap_4977 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973967.1 3998 R 365044 CDS YP_973968.1 121583549 4686034 complement(4501..4917) 1 NC_008762.1 KEGG: pol:Bpro_5485 transcription regulator containing helix turn helix domain; hypothetical protein 4917 4686034 Pnap_4978 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973968.1 4501 R 365044 CDS YP_973969.1 121583550 4686032 complement(5113..5346) 1 NC_008762.1 hypothetical protein 5346 4686032 Pnap_4979 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973969.1 5113 R 365044 CDS YP_973970.1 121583551 4686020 complement(5343..5972) 1 NC_008762.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: xac:XACa0041 partition protein A; cobyrinic acid a,c-diamide synthase 5972 4686020 Pnap_4980 Polaromonas naphthalenivorans CJ2 cobyrinic acid a,c-diamide synthase YP_973970.1 5343 R 365044 CDS YP_973971.1 121583552 4686024 complement(6171..7070) 1 NC_008762.1 KEGG: tcr:504039.180 mucin-associated surface protein (MASP) Pfam: Mucin PROSITE: ALA_RICH GLU_RICH; mucin-associated surface protein 7070 4686024 Pnap_4981 Polaromonas naphthalenivorans CJ2 mucin-associated surface protein YP_973971.1 6171 R 365044 CDS YP_973972.1 121583553 4686029 complement(7158..9689) 1 NC_008762.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: relaxase/mobilization nuclease domain protein; relaxase/mobilization nuclease family protein 9689 4686029 Pnap_4982 Polaromonas naphthalenivorans CJ2 relaxase/mobilization nuclease family protein YP_973972.1 7158 R 365044 CDS YP_973973.1 121583554 4686015 complement(9788..10114) 1 NC_008762.1 hypothetical protein 10114 4686015 Pnap_4983 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973973.1 9788 R 365044 CDS YP_973974.1 121583555 4686027 10429..10821 1 NC_008762.1 hypothetical protein 10821 4686027 Pnap_4984 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973974.1 10429 D 365044 CDS YP_973975.1 121583556 4686025 10818..11522 1 NC_008762.1 KEGG: bxe:Bxe_A2574 hypothetical protein; hypothetical protein 11522 4686025 Pnap_4985 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973975.1 10818 D 365044 CDS YP_973976.1 121583557 4686021 11519..12316 1 NC_008762.1 hypothetical protein 12316 4686021 Pnap_4986 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973976.1 11519 D 365044 CDS YP_973977.1 121583558 4686022 complement(13196..16660) 1 NC_008762.1 KEGG: rfr:Rfer_4327 hypothetical protein; hypothetical protein 16660 4686022 Pnap_4987 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973977.1 13196 R 365044 CDS YP_973978.1 121583559 4686028 complement(17280..18218) 1 NC_008762.1 KEGG: rru:Rru_A0352 RepA; plasmid replication initiator protein-like protein 18218 4686028 Pnap_4988 Polaromonas naphthalenivorans CJ2 plasmid replication initiator protein-like protein YP_973978.1 17280 R 365044 CDS YP_973979.1 121583560 4686017 complement(18290..18595) 1 NC_008762.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ecs:ECs1067 hypothetical protein; addiction module antitoxin 18595 4686017 Pnap_4989 Polaromonas naphthalenivorans CJ2 addiction module antitoxin YP_973979.1 18290 R 365044 CDS YP_973980.1 121583561 4686026 complement(18573..19037) 1 NC_008762.1 KEGG: gme:Gmet_A3568 hypothetical protein; hypothetical protein 19037 4686026 Pnap_4990 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973980.1 18573 R 365044 CDS YP_973981.1 121583562 4686023 complement(19167..19736) 1 NC_008762.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: psp:PSPPH_B0057 resolvase, putative; resolvase domain-containing protein 19736 4686023 Pnap_4991 Polaromonas naphthalenivorans CJ2 resolvase domain-containing protein YP_973981.1 19167 R 365044 CDS YP_973982.1 121583563 4686018 complement(20107..20820) 1 NC_008762.1 unwinds double stranded DNA; replicative DNA helicase 20820 4686018 Pnap_4992 Polaromonas naphthalenivorans CJ2 replicative DNA helicase YP_973982.1 20107 R 365044 CDS YP_973983.1 121583565 4686038 join(9760..9898,1..542) 1 NC_008763.1 KEGG: eba:ebA510 hypothetical protein; hypothetical protein 542 4686038 Pnap_4993 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973983.1 9760 D 365044 CDS YP_973984.1 121583566 4686037 889..1359 1 NC_008763.1 SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 1359 4686037 Pnap_4994 Polaromonas naphthalenivorans CJ2 XRE family transcriptional regulator YP_973984.1 889 D 365044 CDS YP_973985.1 121583567 4686041 complement(1632..1841) 1 NC_008763.1 KEGG: pst:PSPTOA0015 plasmid partition protein ParB, truncated; plasmid partition protein ParB, truncated 1841 4686041 Pnap_4995 Polaromonas naphthalenivorans CJ2 plasmid partition protein ParB, truncated YP_973985.1 1632 R 365044 CDS YP_973986.1 121583568 4686040 complement(1854..2483) 1 NC_008763.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: yps:pYptb0037 plasmid partitioning protein; cobyrinic acid a,c-diamide synthase 2483 4686040 Pnap_4996 Polaromonas naphthalenivorans CJ2 cobyrinic acid a,c-diamide synthase YP_973986.1 1854 R 365044 CDS YP_973987.1 121583569 4686042 complement(3265..3564) 1 NC_008763.1 hypothetical protein 3564 4686042 Pnap_4997 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973987.1 3265 R 365044 CDS YP_973988.1 121583570 4686045 3786..6086 1 NC_008763.1 PFAM: MobA/MobL protein; KEGG: xac:XAC3260 plasmid mobilization protein; MobA/MobL protein 6086 4686045 Pnap_4998 Polaromonas naphthalenivorans CJ2 MobA/MobL protein YP_973988.1 3786 D 365044 CDS YP_973989.1 121583571 4686043 complement(6101..6538) 1 NC_008763.1 PFAM: protein of unknown function DUF29; KEGG: plu:plu3933 hypothetical protein; hypothetical protein 6538 4686043 Pnap_4999 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973989.1 6101 R 365044 CDS YP_973990.1 121583572 4686039 complement(6535..6780) 1 NC_008763.1 hypothetical protein 6780 4686039 Pnap_5000 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973990.1 6535 R 365044 CDS YP_973991.1 121583573 4686044 7191..7706 1 NC_008763.1 hypothetical protein 7706 4686044 Pnap_5001 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973991.1 7191 D 365044 CDS YP_973992.1 121583574 4686036 8054..8710 1 NC_008763.1 KEGG: jan:Jann_1769 mucin-associated surface protein; hypothetical protein 8710 4686036 Pnap_5002 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973992.1 8054 D 365044 CDS YP_973993.1 121583575 4686035 complement(8745..9026) 1 NC_008763.1 hypothetical protein 9026 4686035 Pnap_5003 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973993.1 8745 R 365044 CDS YP_973994.1 121583583 4686046 complement(89..922) 1 NC_008764.1 PFAM: replication C family protein; KEGG: sty:HCM1.221 putative replication protein; replication C family protein 922 4686046 Pnap_5004 Polaromonas naphthalenivorans CJ2 replication C family protein YP_973994.1 89 R 365044 CDS YP_973995.1 121583584 4686047 complement(912..1751) 1 NC_008764.1 KEGG: sfx:S2721 putative DNA helicase; putative DNA helicase 1751 4686047 Pnap_5005 Polaromonas naphthalenivorans CJ2 putative DNA helicase YP_973995.1 912 R 365044 CDS YP_973996.1 121583585 4686048 complement(2033..4519) 1 NC_008764.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: bxe:Bxe_A3938 hypothetical protein; relaxase/mobilization nuclease family protein 4519 4686048 Pnap_5006 Polaromonas naphthalenivorans CJ2 relaxase/mobilization nuclease family protein YP_973996.1 2033 R 365044 CDS YP_973997.1 121583586 4686049 complement(4522..4893) 1 NC_008764.1 PFAM: mobilisation protein; mobilisation protein 4893 4686049 Pnap_5007 Polaromonas naphthalenivorans CJ2 mobilisation protein YP_973997.1 4522 R 365044 CDS YP_973998.1 121583587 4686050 complement(5172..5627) 1 NC_008764.1 hypothetical protein 5627 4686050 Pnap_5008 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_973998.1 5172 R 365044 CDS YP_980249.1 121602920 4687344 2826..3659 1 NC_008781.1 KEGG: jan:Jann_1999 hypothetical protein; hypothetical protein 3659 4687344 Pnap_0002 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980249.1 2826 D 365044 CDS YP_980250.1 121602921 4687079 complement(3701..4522) 1 NC_008781.1 hypothetical protein 4522 4687079 Pnap_0003 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980250.1 3701 R 365044 CDS YP_980251.1 121602922 4687078 4747..4953 1 NC_008781.1 KEGG: rfr:Rfer_0182 hypothetical protein; hypothetical protein 4953 4687078 Pnap_0004 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980251.1 4747 D 365044 CDS YP_980252.1 121602923 4687080 5033..5608 1 NC_008781.1 PFAM: NnrUfamily protein; KEGG: pol:Bpro_0008 NnrU; NnrU family protein 5608 4687080 Pnap_0005 Polaromonas naphthalenivorans CJ2 NnrU family protein YP_980252.1 5033 D 365044 CDS YP_980253.1 121602924 4687081 5834..6508 1 NC_008781.1 KEGG: pol:Bpro_0016 hypothetical protein; hypothetical protein 6508 4687081 Pnap_0006 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980253.1 5834 D 365044 CDS YP_980254.1 121602925 4687082 complement(6653..6913) 1 NC_008781.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 6913 4687082 Pnap_0007 Polaromonas naphthalenivorans CJ2 cell division topological specificity factor MinE YP_980254.1 6653 R 365044 CDS YP_980255.1 121602926 4687083 complement(6920..7735) 1 NC_008781.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0019 septum site-determining protein MinD; septum site-determining protein MinD 7735 4687083 Pnap_0008 Polaromonas naphthalenivorans CJ2 septum site-determining protein MinD YP_980255.1 6920 R 365044 CDS YP_980256.1 121602927 4687084 complement(7871..8641) 1 NC_008781.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: pol:Bpro_0020 septum site-determining protein MinC; septum site-determining protein MinC 8641 4687084 Pnap_0009 Polaromonas naphthalenivorans CJ2 septum site-determining protein MinC YP_980256.1 7871 R 365044 CDS YP_980257.1 121602928 4687086 8791..9030 1 NC_008781.1 KEGG: pol:Bpro_0021 metallophosphoesterase; hypothetical protein 9030 4687086 Pnap_0010 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980257.1 8791 D 365044 CDS YP_980258.1 121602929 4687085 9140..9574 1 NC_008781.1 PFAM: protein of unknown function DUF296; KEGG: bxe:Bxe_B2660 hypothetical protein; hypothetical protein 9574 4687085 Pnap_0011 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980258.1 9140 D 365044 CDS YP_980259.1 121602930 4687088 complement(9620..10642) 1 NC_008781.1 KEGG: pol:Bpro_0024 hypothetical protein; hypothetical protein 10642 4687088 Pnap_0012 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980259.1 9620 R 365044 CDS YP_980260.1 121602931 4687087 complement(10635..11936) 1 NC_008781.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_0025 phospholipase D/transphosphatidylase; cardiolipin synthase 2 11936 4687087 Pnap_0013 Polaromonas naphthalenivorans CJ2 cardiolipin synthase 2 YP_980260.1 10635 R 365044 CDS YP_980261.1 121602932 4687089 complement(12012..12845) 1 NC_008781.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pol:Bpro_0026 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 12845 4687089 Pnap_0014 Polaromonas naphthalenivorans CJ2 endonuclease/exonuclease/phosphatase YP_980261.1 12012 R 365044 CDS YP_980262.1 121602933 4687090 13194..13568 1 NC_008781.1 KEGG: rfr:Rfer_2108 hypothetical protein; hypothetical protein 13568 4687090 Pnap_0015 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980262.1 13194 D 365044 CDS YP_980263.1 121602934 4687091 complement(13600..14670) 1 NC_008781.1 KEGG: pol:Bpro_0028 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 14670 4687091 Pnap_0016 Polaromonas naphthalenivorans CJ2 NADPH-dependent FMN reductase YP_980263.1 13600 R 365044 CDS YP_980264.1 121602935 4687092 complement(14939..15508) 1 NC_008781.1 KEGG: pol:Bpro_0029 hypothetical protein; hypothetical protein 15508 4687092 Pnap_0017 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980264.1 14939 R 365044 CDS YP_980265.1 121602936 4687093 15738..16397 1 NC_008781.1 KEGG: rfr:Rfer_2928 hypothetical protein; hypothetical protein 16397 4687093 Pnap_0018 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980265.1 15738 D 365044 CDS YP_980266.1 121602937 4687094 16663..18579 1 NC_008781.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 18579 4687094 Pnap_0019 Polaromonas naphthalenivorans CJ2 thiamine biosynthesis protein ThiC YP_980266.1 16663 D 365044 CDS YP_980267.1 121602938 4687095 18854..19921 1 NC_008781.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0038 FAD dependent oxidoreductase; glycine oxidase ThiO 19921 4687095 Pnap_0020 Polaromonas naphthalenivorans CJ2 glycine oxidase ThiO YP_980267.1 18854 D 365044 CDS YP_980268.1 121602939 4687096 19946..20155 1 NC_008781.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: hch:HCH_00139 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 20155 4687096 Pnap_0021 Polaromonas naphthalenivorans CJ2 thiamine biosynthesis protein ThiS YP_980268.1 19946 D 365044 CDS YP_980269.1 121602940 4687097 20158..20976 1 NC_008781.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 20976 thiG 4687097 thiG Polaromonas naphthalenivorans CJ2 thiazole synthase YP_980269.1 20158 D 365044 CDS YP_980270.1 121602941 4687098 21038..21679 1 NC_008781.1 KEGG: pol:Bpro_0041 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 21679 4687098 Pnap_0023 Polaromonas naphthalenivorans CJ2 thiamine-phosphate pyrophosphorylase YP_980270.1 21038 D 365044 CDS YP_980271.1 121602942 4687101 21825..22331 1 NC_008781.1 KEGG: sde:Sde_1824 hypothetical protein; hypothetical protein 22331 4687101 Pnap_0024 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980271.1 21825 D 365044 CDS YP_980272.1 121602943 4687100 complement(22361..23635) 1 NC_008781.1 PFAM: glycosyl transferase, family 51; KEGG: stt:t3243 monofunctional biosynthetic peptidoglycan transglycosylase; glycosyl transferase family protein 23635 4687100 Pnap_0025 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_980272.1 22361 R 365044 CDS YP_980273.1 121602944 4687102 complement(23632..24183) 1 NC_008781.1 hypothetical protein 24183 4687102 Pnap_0026 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980273.1 23632 R 365044 CDS YP_980274.1 121602945 4687103 complement(24208..25053) 1 NC_008781.1 KEGG: hch:HCH_06497 hypothetical protein; hypothetical protein 25053 4687103 Pnap_0027 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980274.1 24208 R 365044 CDS YP_980275.1 121602946 4687104 complement(25129..27234) 1 NC_008781.1 PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: sat:SYN_02036 von Willebrand factor type A like domain; vault protein inter-alpha-trypsin subunit 27234 4687104 Pnap_0028 Polaromonas naphthalenivorans CJ2 vault protein inter-alpha-trypsin subunit YP_980275.1 25129 R 365044 CDS YP_980276.1 121602947 4687105 complement(27624..29060) 1 NC_008781.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 29060 4687105 Pnap_0029 Polaromonas naphthalenivorans CJ2 sensory histidine kinase CreC YP_980276.1 27624 R 365044 CDS YP_980277.1 121602948 4687106 complement(29057..29905) 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: reu:Reut_A0185 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator 29905 4687106 Pnap_0030 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_980277.1 29057 R 365044 CDS YP_980278.1 121602949 4687160 complement(29940..31055) 1 NC_008781.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pol:Bpro_0063 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 31055 4687160 Pnap_0031 Polaromonas naphthalenivorans CJ2 NADH:flavin oxidoreductase YP_980278.1 29940 R 365044 CDS YP_980279.1 121602950 4687114 31502..31687 1 NC_008781.1 PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0066 protein of unknown function DUF1328; hypothetical protein 31687 4687114 Pnap_0032 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980279.1 31502 D 365044 CDS YP_980280.1 121602951 4687154 31692..32006 1 NC_008781.1 KEGG: pol:Bpro_0067 hypothetical protein; hypothetical protein 32006 4687154 Pnap_0033 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980280.1 31692 D 365044 CDS YP_980281.1 121602952 4689993 32075..32929 1 NC_008781.1 PFAM: transglutaminase domain protein; KEGG: pol:Bpro_0068 transglutaminase-like; transglutaminase domain-containing protein 32929 4689993 Pnap_0034 Polaromonas naphthalenivorans CJ2 transglutaminase domain-containing protein YP_980281.1 32075 D 365044 CDS YP_980282.1 121602953 4689992 complement(33135..34937) 1 NC_008781.1 catalyzes the hydrolysis of allophanate; allophanate hydrolase 34937 4689992 Pnap_0035 Polaromonas naphthalenivorans CJ2 allophanate hydrolase YP_980282.1 33135 R 365044 CDS YP_980283.1 121602954 4689990 complement(34934..38545) 1 NC_008781.1 TIGRFAM: urea amidolyase related protein; biotin carboxylation domain protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: reu:Reut_B4883 allophanate hydrolase subunit 2; biotin carboxylase 38545 4689990 Pnap_0036 Polaromonas naphthalenivorans CJ2 biotin carboxylase YP_980283.1 34934 R 365044 CDS YP_980284.1 121602955 4689991 complement(38686..39339) 1 NC_008781.1 KEGG: neu:NE2417 hypothetical protein; hypothetical protein 39339 4689991 Pnap_0037 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980284.1 38686 R 365044 CDS YP_980285.1 121602956 4689987 complement(39336..40070) 1 NC_008781.1 KEGG: bxe:Bxe_B1382 hypothetical protein; hypothetical protein 40070 4689987 Pnap_0038 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980285.1 39336 R 365044 CDS YP_980286.1 121602957 4689985 complement(40067..40897) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_B4886 ABC transporter related; ABC transporter-like protein 40897 4689985 Pnap_0039 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980286.1 40067 R 365044 CDS YP_980287.1 121602958 4689986 complement(40903..41682) 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_B4887 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 41682 4689986 Pnap_0040 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_980287.1 40903 R 365044 CDS YP_980288.1 121602959 4689989 complement(41693..42709) 1 NC_008781.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NLPA lipoprotein; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: reu:Reut_B4888 ABC transporter, substrate-binding protein, aliphatic sulphonates; aliphatic sulfonates ABC transporter substrate-binding protein 42709 4689989 Pnap_0041 Polaromonas naphthalenivorans CJ2 aliphatic sulfonates ABC transporter substrate-binding protein YP_980288.1 41693 R 365044 CDS YP_980289.1 121602960 4689774 complement(43159..43542) 1 NC_008781.1 KEGG: bxe:Bxe_A3256 methylglyoxal synthase; TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein; methylglyoxal synthase 43542 4689774 Pnap_0042 Polaromonas naphthalenivorans CJ2 methylglyoxal synthase YP_980289.1 43159 R 365044 CDS YP_980290.1 121602961 4689983 complement(43586..44605) 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: gka:GK1971 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein); TRAP dicarboxylate transporter subunit DctP 44605 4689983 Pnap_0043 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctP YP_980290.1 43586 R 365044 CDS YP_980291.1 121602962 4689329 complement(44646..45938) 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sme:SMa0250 conserved hypothetical DedA-like protein; TRAP dicarboxylate transporter subunit DctM 45938 4689329 Pnap_0044 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctM YP_980291.1 44646 R 365044 CDS YP_980292.1 121602963 4689332 complement(45944..46456) 1 NC_008781.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_2839 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 46456 4689332 Pnap_0045 Polaromonas naphthalenivorans CJ2 tripartite ATP-independent periplasmic transporter DctQ YP_980292.1 45944 R 365044 CDS YP_980293.1 121602964 4689341 complement(46453..46962) 1 NC_008781.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: rfr:Rfer_0956 carbohydrate kinase, thermoresistant glucokinase; carbohydrate kinase 46962 4689341 Pnap_0046 Polaromonas naphthalenivorans CJ2 carbohydrate kinase YP_980293.1 46453 R 365044 CDS YP_980294.1 121602965 4689334 47101..48171 1 NC_008781.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_0957 transcriptional regulator, LacI family; periplasmic-binding protein/LacI transcriptional regulator 48171 4689334 Pnap_0047 Polaromonas naphthalenivorans CJ2 periplasmic-binding protein/LacI transcriptional regulator YP_980294.1 47101 D 365044 CDS YP_980295.1 121602966 4689339 48364..48840 1 NC_008781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_2851 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 48840 4689339 Pnap_0048 Polaromonas naphthalenivorans CJ2 4Fe-4S ferredoxin YP_980295.1 48364 D 365044 CDS YP_980296.1 121602967 4689786 48852..50699 1 NC_008781.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: rfr:Rfer_2850 aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase 50699 4689786 Pnap_0049 Polaromonas naphthalenivorans CJ2 aldehyde ferredoxin oxidoreductase YP_980296.1 48852 D 365044 CDS YP_980297.1 121602968 4689793 50775..52064 1 NC_008781.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2849 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 52064 4689793 Pnap_0050 Polaromonas naphthalenivorans CJ2 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_980297.1 50775 D 365044 CDS YP_980298.1 121602969 4689803 52061..52315 1 NC_008781.1 PFAM: thiamineS protein; KEGG: rfr:Rfer_2848 thiamineS; hypothetical protein 52315 4689803 Pnap_0051 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980298.1 52061 D 365044 CDS YP_980299.1 121602970 4689813 52320..52619 1 NC_008781.1 KEGG: rfr:Rfer_2847 hypothetical protein; hypothetical protein 52619 4689813 Pnap_0052 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980299.1 52320 D 365044 CDS YP_980300.1 121602971 4689824 52725..54020 1 NC_008781.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_0283 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 54020 4689824 Pnap_0053 Polaromonas naphthalenivorans CJ2 acetyl-CoA hydrolase/transferase YP_980300.1 52725 D 365044 CDS YP_980301.1 121602972 4689836 54110..55105 1 NC_008781.1 KEGG: spn:SP1772 cell wall surface anchor family protein; hypothetical protein 55105 4689836 Pnap_0054 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980301.1 54110 D 365044 CDS YP_980302.1 121602973 4689782 55153..55944 1 NC_008781.1 hypothetical protein 55944 4689782 Pnap_0055 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980302.1 55153 D 365044 CDS YP_980303.1 121602974 4689787 complement(56052..58742) 1 NC_008781.1 PFAM: GCN5-related N-acetyltransferase; ATP-citrate lyase/succinyl-CoA ligase; KEGG: rfr:Rfer_2352 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 58742 4689787 Pnap_0056 Polaromonas naphthalenivorans CJ2 N-acetyltransferase GCN5 YP_980303.1 56052 R 365044 CDS YP_980304.1 121602975 4689776 complement(58751..59677) 1 NC_008781.1 PFAM: histone deacetylase superfamily; KEGG: bxe:Bxe_B1514 putative histone deacetylase-family protein; histone deacetylase superfamily protein 59677 4689776 Pnap_0057 Polaromonas naphthalenivorans CJ2 histone deacetylase superfamily protein YP_980304.1 58751 R 365044 CDS YP_980305.1 121602976 4689971 complement(59940..61100) 1 NC_008781.1 hypothetical protein 61100 4689971 Pnap_0058 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980305.1 59940 R 365044 CDS YP_980306.1 121602977 4690007 complement(61169..63475) 1 NC_008781.1 KEGG: ade:Adeh_0897 hypothetical protein; hypothetical protein 63475 4690007 Pnap_0059 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980306.1 61169 R 365044 CDS YP_980307.1 121602978 4689872 complement(63703..64887) 1 NC_008781.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 64887 4689872 Pnap_0060 Polaromonas naphthalenivorans CJ2 beta-ketothiolase YP_980307.1 63703 R 365044 CDS YP_980308.1 121602979 4689890 65095..65376 1 NC_008781.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: gox:GOX1500 hypothetical protein; prevent-host-death family protein 65376 4689890 Pnap_0061 Polaromonas naphthalenivorans CJ2 prevent-host-death family protein YP_980308.1 65095 D 365044 CDS YP_980309.1 121602980 4689904 65380..65799 1 NC_008781.1 KEGG: dge:Dgeo_2717 hypothetical protein; hypothetical protein 65799 4689904 Pnap_0062 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980309.1 65380 D 365044 CDS YP_980310.1 121602981 4689926 65801..67804 1 NC_008781.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 67804 4689926 Pnap_0063 Polaromonas naphthalenivorans CJ2 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_980310.1 65801 D 365044 CDS YP_980311.1 121602982 4689619 67804..68469 1 NC_008781.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 68469 gidB 4689619 gidB Polaromonas naphthalenivorans CJ2 16S rRNA methyltransferase GidB YP_980311.1 67804 D 365044 CDS YP_980312.1 121602983 4686303 68499..69125 1 NC_008781.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_0075 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 69125 4686303 Pnap_0065 Polaromonas naphthalenivorans CJ2 lysine exporter protein LysE/YggA YP_980312.1 68499 D 365044 CDS YP_980313.1 121602984 4687582 69180..69944 1 NC_008781.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0076 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 69944 4687582 Pnap_0066 Polaromonas naphthalenivorans CJ2 cobyrinic acid a,c-diamide synthase YP_980313.1 69180 D 365044 CDS YP_980314.1 121602985 4686517 70070..70612 1 NC_008781.1 PFAM: protein of unknown function DUF1234; KEGG: pol:Bpro_0077 protein of unknown function DUF1234; hypothetical protein 70612 4686517 Pnap_0067 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980314.1 70070 D 365044 CDS YP_980315.1 121602986 4687578 70682..71617 1 NC_008781.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: pol:Bpro_0078 ParB-like partition proteins; parB-like partition proteins 71617 4687578 Pnap_0068 Polaromonas naphthalenivorans CJ2 parB-like partition proteins YP_980315.1 70682 D 365044 CDS YP_980316.1 121602987 4688054 complement(71660..73081) 1 NC_008781.1 PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0111 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 73081 4688054 Pnap_0069 Polaromonas naphthalenivorans CJ2 FAD linked oxidase domain-containing protein YP_980316.1 71660 R 365044 CDS YP_980317.1 121602988 4686447 73261..73854 1 NC_008781.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pol:Bpro_0113 ATP--cobalamin adenosyltransferase; ATP--cobalamin adenosyltransferase 73854 4686447 Pnap_0070 Polaromonas naphthalenivorans CJ2 ATP--cobalamin adenosyltransferase YP_980317.1 73261 D 365044 CDS YP_980318.1 121602989 4687579 complement(73873..74817) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_A2466 transcriptional regulator, LysR family; LysR family transcriptional regulator 74817 4687579 Pnap_0071 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_980318.1 73873 R 365044 CDS YP_980319.1 121602990 4688268 complement(74868..75176) 1 NC_008781.1 hypothetical protein 75176 4688268 Pnap_0072 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980319.1 74868 R 365044 CDS YP_980320.1 121602991 4688384 complement(75670..77220) 1 NC_008781.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_2807 acetyl-CoA hydrolase/transferase; Acetyl-CoA hydrolase 77220 4688384 Pnap_0073 Polaromonas naphthalenivorans CJ2 Acetyl-CoA hydrolase YP_980320.1 75670 R 365044 CDS YP_980321.1 121602992 4689973 77560..78861 1 NC_008781.1 KEGG: pol:Bpro_0115 hypothetical protein; hypothetical protein 78861 4689973 Pnap_0074 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980321.1 77560 D 365044 CDS YP_980322.1 121602993 4689607 78921..79361 1 NC_008781.1 KEGG: pol:Bpro_0116 hypothetical protein; hypothetical protein 79361 4689607 Pnap_0075 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980322.1 78921 D 365044 CDS YP_980323.1 121602994 4688589 complement(79407..80693) 1 NC_008781.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pol:Bpro_0117 uracil-xanthine permease; uracil-xanthine permease 80693 4688589 Pnap_0076 Polaromonas naphthalenivorans CJ2 uracil-xanthine permease YP_980323.1 79407 R 365044 CDS YP_980324.1 121602995 4687681 complement(80771..81925) 1 NC_008781.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: lpp:lpp2271 twitching motility protein PilU; twitching motility protein 81925 4687681 Pnap_0077 Polaromonas naphthalenivorans CJ2 twitching motility protein YP_980324.1 80771 R 365044 CDS YP_980325.1 121602996 4686441 82107..82568 1 NC_008781.1 KEGG: pol:Bpro_5398 putative transposase, IS891/IS1136/IS1341; putative transposase, IS891/IS1136/IS1341 82568 4686441 Pnap_0078 Polaromonas naphthalenivorans CJ2 putative transposase, IS891/IS1136/IS1341 YP_980325.1 82107 D 365044 CDS YP_980326.1 121602997 4689818 82622..83347 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB; KEGG: pol:Bpro_5398 putative transposase, IS891/IS1136/IS1341; IS605 family transposase OrfB 83347 4689818 Pnap_0079 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_980326.1 82622 D 365044 CDS YP_980327.1 121602998 4688681 83455..84699 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ade:Adeh_3412 secretion protein HlyD; RND family efflux transporter MFP subunit 84699 4688681 Pnap_0080 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_980327.1 83455 D 365044 CDS YP_980328.1 121602999 4686291 84719..85981 1 NC_008781.1 PFAM: protein of unknown function DUF214; KEGG: ade:Adeh_3411 ABC transporter, inner membrane subunit; hypothetical protein 85981 4686291 Pnap_0081 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980328.1 84719 D 365044 CDS YP_980329.1 121603000 4686262 complement(86106..86903) 1 NC_008781.1 hypothetical protein 86903 4686262 Pnap_0082 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980329.1 86106 R 365044 CDS YP_980330.1 121603001 4687694 87552..87908 1 NC_008781.1 PFAM: protein of unknown function DUF891; KEGG: eba:ebD100 hypothetical prophage protein; hypothetical protein 87908 4687694 Pnap_0084 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980330.1 87552 D 365044 CDS YP_980331.1 121603002 4686832 87914..88234 1 NC_008781.1 KEGG: cch:Cag_1308 hypothetical protein; putative transcriptional regulator 88234 4686832 Pnap_0085 Polaromonas naphthalenivorans CJ2 putative transcriptional regulator YP_980331.1 87914 D 365044 CDS YP_980332.1 121603003 4686541 88241..88936 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3881 ABC transporter related; ABC transporter-like protein 88936 4686541 Pnap_0086 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980332.1 88241 D 365044 CDS YP_980333.1 121603004 4688462 89356..89646 1 NC_008781.1 KEGG: mlo:msl5725 hypothetical protein; hypothetical protein 89646 4688462 Pnap_0087 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980333.1 89356 D 365044 CDS YP_980334.1 121603005 4688848 complement(89793..90212) 1 NC_008781.1 KEGG: dar:Daro_2916 hypothetical protein; hypothetical protein 90212 4688848 Pnap_0088 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980334.1 89793 R 365044 CDS YP_980335.1 121603006 4686113 complement(90501..92018) 1 NC_008781.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: rfr:Rfer_2024 adenylate cyclase; adenylate cyclase 92018 4686113 Pnap_0089 Polaromonas naphthalenivorans CJ2 adenylate cyclase YP_980335.1 90501 R 365044 CDS YP_980336.1 121603007 4688923 complement(92109..93173) 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rso:RSp1044 probable cobalt-nickel-resistance system transmembrane protein; hypothetical protein 93173 4688923 Pnap_0090 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980336.1 92109 R 365044 CDS YP_980337.1 121603008 4686429 93497..96289 1 NC_008781.1 KEGG: ana:alr3092 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 96289 4686429 Pnap_0091 Polaromonas naphthalenivorans CJ2 PAS/PAC sensor hybrid histidine kinase YP_980337.1 93497 D 365044 CDS YP_980338.1 121603009 4687322 complement(96335..96853) 1 NC_008781.1 PFAM: flavin reductase domain protein, FMN-binding; KEGG: pol:Bpro_0126 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein 96853 4687322 Pnap_0092 Polaromonas naphthalenivorans CJ2 flavin reductase domain-containing protein YP_980338.1 96335 R 365044 CDS YP_980339.1 121603010 4687775 complement(96966..97262) 1 NC_008781.1 KEGG: pol:Bpro_0143 hypothetical protein; hypothetical protein 97262 4687775 Pnap_0093 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980339.1 96966 R 365044 CDS YP_980340.1 121603011 4689780 complement(97385..98752) 1 NC_008781.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0148 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 98752 4689780 Pnap_0094 Polaromonas naphthalenivorans CJ2 D-amino-acid dehydrogenase YP_980340.1 97385 R 365044 CDS YP_980341.1 121603012 4687695 98864..99778 1 NC_008781.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 99778 4687695 Pnap_0095 Polaromonas naphthalenivorans CJ2 chromosome replication initiation inhibitor protein YP_980341.1 98864 D 365044 CDS YP_980342.1 121603013 4686306 99880..101130 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0150 extracellular ligand-binding receptor; extracellular ligand-binding receptor 101130 4686306 Pnap_0096 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_980342.1 99880 D 365044 CDS YP_980343.1 121603014 4687029 101249..104923 1 NC_008781.1 KEGG: pol:Bpro_0151 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 104923 4687029 Pnap_0097 Polaromonas naphthalenivorans CJ2 multi-sensor signal transduction histidine kinase YP_980343.1 101249 D 365044 CDS YP_980344.1 121603015 4687249 complement(105043..105465) 1 NC_008781.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_0401 UspA; UspA domain-containing protein 105465 4687249 Pnap_0098 Polaromonas naphthalenivorans CJ2 UspA domain-containing protein YP_980344.1 105043 R 365044 CDS YP_980345.1 121603016 4687252 complement(105547..106497) 1 NC_008781.1 PFAM: metallophosphoesterase; KEGG: pol:Bpro_0155 metallophosphoesterase; metallophosphoesterase 106497 4687252 Pnap_0099 Polaromonas naphthalenivorans CJ2 metallophosphoesterase YP_980345.1 105547 R 365044 CDS YP_980346.1 121603017 4687066 complement(106815..107771) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0158 transcriptional regulator, LysR family; LysR family transcriptional regulator 107771 4687066 Pnap_0100 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_980346.1 106815 R 365044 CDS YP_980347.1 121603018 4687032 107919..108440 1 NC_008781.1 KEGG: pol:Bpro_0159 hypothetical protein; hypothetical protein 108440 4687032 Pnap_0101 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980347.1 107919 D 365044 CDS YP_980348.1 121603019 4688325 complement(108552..110420) 1 NC_008781.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 110420 4688325 Pnap_0102 Polaromonas naphthalenivorans CJ2 phosphoenolpyruvate carboxykinase YP_980348.1 108552 R 365044 CDS YP_980349.1 121603020 4687939 complement(110417..110683) 1 NC_008781.1 hypothetical protein 110683 4687939 Pnap_0103 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980349.1 110417 R 365044 CDS YP_980350.1 121603021 4688373 complement(111104..112474) 1 NC_008781.1 hypothetical protein 112474 4688373 Pnap_0104 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980350.1 111104 R 365044 CDS YP_980351.1 121603022 4688528 112533..113192 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: corR; DNA-binding response regulator CorR; two component LuxR family transcriptional regulator 113192 4688528 Pnap_0105 Polaromonas naphthalenivorans CJ2 two component LuxR family transcriptional regulator YP_980351.1 112533 D 365044 CDS YP_980352.1 121603023 4688823 113225..115198 1 NC_008781.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_4855 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 115198 4688823 Pnap_0106 Polaromonas naphthalenivorans CJ2 integral membrane sensor hybrid histidine kinase YP_980352.1 113225 D 365044 CDS YP_980353.1 121603024 4688693 complement(115233..115898) 1 NC_008781.1 PFAM: ABC transporter related; KEGG: rfr:Rfer_3383 ABC transporter related; ABC transporter-like protein 115898 4688693 Pnap_0107 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980353.1 115233 R 365044 CDS YP_980354.1 121603025 4689311 complement(116006..116251) 1 NC_008781.1 KEGG: rfr:Rfer_0345 hypothetical protein; hypothetical protein 116251 4689311 Pnap_0108 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980354.1 116006 R 365044 CDS YP_980355.1 121603026 4689317 116291..116764 1 NC_008781.1 KEGG: pol:Bpro_0164 hypothetical protein; hypothetical protein 116764 4689317 Pnap_0109 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980355.1 116291 D 365044 CDS YP_980356.1 121603027 4689766 116771..117349 1 NC_008781.1 PFAM: MOSC domain containing protein; KEGG: rme:Rmet_3580 MOSC domain protein; MOSC domain-containing protein 117349 4689766 Pnap_0110 Polaromonas naphthalenivorans CJ2 MOSC domain-containing protein YP_980356.1 116771 D 365044 CDS YP_980357.1 121603028 4689862 complement(117376..118578) 1 NC_008781.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 118578 4689862 Pnap_0111 Polaromonas naphthalenivorans CJ2 threonine dehydratase YP_980357.1 117376 R 365044 CDS YP_980358.1 121603029 4688634 118782..121151 1 NC_008781.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_0166 AAA ATPase, central region; ATPase central domain-containing protein 121151 4688634 Pnap_0112 Polaromonas naphthalenivorans CJ2 ATPase central domain-containing protein YP_980358.1 118782 D 365044 CDS YP_980359.1 121603030 4689270 121574..121873 1 NC_008781.1 KEGG: bxe:Bxe_B0555 hypothetical protein; hypothetical protein 121873 4689270 Pnap_0113 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980359.1 121574 D 365044 CDS YP_980360.1 121603031 4689464 complement(122049..123968) 1 NC_008781.1 KEGG: pol:Bpro_0170 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 123968 4689464 Pnap_0114 Polaromonas naphthalenivorans CJ2 ATP-dependent DNA helicase RecQ YP_980360.1 122049 R 365044 CDS YP_980361.1 121603032 4689164 124205..125260 1 NC_008781.1 PFAM: homocysteine S-methyltransferase; KEGG: pol:Bpro_0172 5-methyltetrahydrofolate--homocysteine S-methyltransferase; homocysteine S-methyltransferase 125260 4689164 Pnap_0115 Polaromonas naphthalenivorans CJ2 homocysteine S-methyltransferase YP_980361.1 124205 D 365044 CDS YP_980362.1 121603033 4688868 complement(125288..125872) 1 NC_008781.1 PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_0173 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein 125872 4688868 Pnap_0116 Polaromonas naphthalenivorans CJ2 cyclic nucleotide-binding protein YP_980362.1 125288 R 365044 CDS YP_980363.1 121603034 4688223 126045..128864 1 NC_008781.1 KEGG: pol:Bpro_0174 5-methyltetrahydrofolate--homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein; methionine synthase 128864 4688223 Pnap_0117 Polaromonas naphthalenivorans CJ2 methionine synthase YP_980363.1 126045 D 365044 CDS YP_980364.1 121603035 4688033 129037..130506 1 NC_008781.1 KEGG: mma:MM1677 hypothetical protein; hypothetical protein 130506 4688033 Pnap_0118 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980364.1 129037 D 365044 CDS YP_980365.1 121603036 4687485 complement(130589..132136) 1 NC_008781.1 KEGG: pol:Bpro_0181 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 132136 4687485 Pnap_0119 Polaromonas naphthalenivorans CJ2 Mg chelatase subunit ChlI YP_980365.1 130589 R 365044 CDS YP_980366.1 121603037 4687297 132475..132813 1 NC_008781.1 PFAM: nitrogen regulatory protein P-II; KEGG: pol:Bpro_0183 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 132813 4687297 Pnap_0120 Polaromonas naphthalenivorans CJ2 nitrogen regulatory protein P-II YP_980366.1 132475 D 365044 CDS YP_980367.1 121603038 4686665 132847..134412 1 NC_008781.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pol:Bpro_0184 ammonium transporter; ammonium transporter 134412 4686665 Pnap_0121 Polaromonas naphthalenivorans CJ2 ammonium transporter YP_980367.1 132847 D 365044 CDS YP_980368.1 121603039 4686481 134558..135484 1 NC_008781.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pol:Bpro_0186 senescence marker protein-30 (SMP-30); SMP-30/gluconolaconase/LRE domain-containing protein 135484 4686481 Pnap_0122 Polaromonas naphthalenivorans CJ2 SMP-30/gluconolaconase/LRE domain-containing protein YP_980368.1 134558 D 365044 CDS YP_980369.1 121603040 4686397 135697..136845 1 NC_008781.1 PFAM: FAD linked oxidase domain protein; KEGG: rfr:Rfer_0480 FAD linked oxidase-like; glycolate oxidase FAD-binding subunit 136845 glcE 4686397 glcE Polaromonas naphthalenivorans CJ2 glycolate oxidase FAD-binding subunit YP_980369.1 135697 D 365044 CDS YP_980370.1 121603041 4687164 136854..137618 1 NC_008781.1 PFAM: protein of unknown function DUF1275; KEGG: bur:Bcep18194_C7065 protein of unknown function DUF1275; hypothetical protein 137618 4687164 Pnap_0124 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980370.1 136854 D 365044 CDS YP_980371.1 121603042 4688391 137627..138874 1 NC_008781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: pol:Bpro_0188 protein of unknown function DUF224, cysteine-rich region; glycolate oxidase iron-sulfur subunit 138874 glcF 4688391 glcF Polaromonas naphthalenivorans CJ2 glycolate oxidase iron-sulfur subunit YP_980371.1 137627 D 365044 CDS YP_980372.1 121603043 4686339 139116..139478 1 NC_008781.1 KEGG: hypothetical protein; hypothetical protein 139478 4686339 Pnap_0126 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980372.1 139116 D 365044 CDS YP_980373.1 121603044 4686138 complement(139586..140629) 1 NC_008781.1 KEGG: cvi:CV0172 poly (3-hydroxybutyrate) depolymerase; poly (3-hydroxybutyrate) depolymerase 140629 4686138 Pnap_0127 Polaromonas naphthalenivorans CJ2 poly (3-hydroxybutyrate) depolymerase YP_980373.1 139586 R 365044 CDS YP_980374.1 121603045 4687310 complement(140744..141229) 1 NC_008781.1 PFAM: glutathione peroxidase; KEGG: pol:Bpro_0190 glutathione peroxidase; glutathione peroxidase 141229 4687310 Pnap_0128 Polaromonas naphthalenivorans CJ2 glutathione peroxidase YP_980374.1 140744 R 365044 CDS YP_980375.1 121603046 4687947 complement(141352..142260) 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_0191 protein of unknown function DUF6, transmembrane; hypothetical protein 142260 4687947 Pnap_0129 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980375.1 141352 R 365044 CDS YP_980376.1 121603047 4688920 complement(142260..143540) 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 major facilitator superfamily MFS_1; lysophospholipid transporter LplT 143540 4688920 Pnap_0130 Polaromonas naphthalenivorans CJ2 lysophospholipid transporter LplT YP_980376.1 142260 R 365044 CDS YP_980377.1 121603048 4689202 143732..144829 1 NC_008781.1 KEGG: pol:Bpro_0193 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 144829 4689202 Pnap_0131 Polaromonas naphthalenivorans CJ2 alanine racemase YP_980377.1 143732 D 365044 CDS YP_980378.1 121603049 4689299 144826..145665 1 NC_008781.1 KEGG: Dmel_CG32611; CG32611 gene product from transcript CG32611-RB; hypothetical protein 145665 4689299 Pnap_0132 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980378.1 144826 D 365044 CDS YP_980379.1 121603050 4689877 145719..146114 1 NC_008781.1 PFAM: DNA polymerase, beta domain protein region; KEGG: neu:NE2224 hypothetical protein; DNA polymerase subunit beta 146114 4689877 Pnap_0133 Polaromonas naphthalenivorans CJ2 DNA polymerase subunit beta YP_980379.1 145719 D 365044 CDS YP_980380.1 121603051 4689120 146104..146532 1 NC_008781.1 PFAM: protein of unknown function DUF86; KEGG: neu:NE2225 protein of unknown function DUF86; hypothetical protein 146532 4689120 Pnap_0134 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980380.1 146104 D 365044 CDS YP_980381.1 121603052 4688970 complement(146529..147503) 1 NC_008781.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 147503 4688970 Pnap_0135 Polaromonas naphthalenivorans CJ2 2-dehydropantoate 2-reductase YP_980381.1 146529 R 365044 CDS YP_980382.1 121603053 4688468 complement(147617..148684) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0198 twin-arginine translocation pathway signal; hypothetical protein 148684 4688468 Pnap_0136 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980382.1 147617 R 365044 CDS YP_980383.1 121603054 4687685 complement(148739..149176) 1 NC_008781.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pol:Bpro_0199 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 149176 4687685 Pnap_0137 Polaromonas naphthalenivorans CJ2 5-carboxymethyl-2-hydroxymuconate isomerase YP_980383.1 148739 R 365044 CDS YP_980384.1 121603055 4687703 149206..150633 1 NC_008781.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 150633 4687703 Pnap_0138 Polaromonas naphthalenivorans CJ2 DNA repair protein RadA YP_980384.1 149206 D 365044 CDS YP_980385.1 121603056 4686801 150668..151450 1 NC_008781.1 PFAM: metallophosphoesterase; KEGG: pol:Bpro_0201 metallophosphoesterase; metallophosphoesterase 151450 4686801 Pnap_0139 Polaromonas naphthalenivorans CJ2 metallophosphoesterase YP_980385.1 150668 D 365044 CDS YP_980386.1 121603057 4686460 151598..152002 1 NC_008781.1 KEGG: pol:Bpro_0202 hypothetical protein; hypothetical protein 152002 4686460 Pnap_0140 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980386.1 151598 D 365044 CDS YP_980387.1 121603058 4686896 complement(152045..152521) 1 NC_008781.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 152521 4686896 Pnap_0141 Polaromonas naphthalenivorans CJ2 putative transposase of insertion sequence ISRm10-1 YP_980387.1 152045 R 365044 CDS YP_980388.1 121603059 4686133 complement(152541..152999) 1 NC_008781.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein 152999 4686133 Pnap_0142 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980388.1 152541 R 365044 CDS YP_980389.1 121603060 4687033 complement(153075..153602) 1 NC_008781.1 PFAM: Spore coat U domain protein; KEGG: bxe:Bxe_B0341 putative lipoprotein; spore coat U domain-containing protein 153602 4687033 Pnap_0143 Polaromonas naphthalenivorans CJ2 spore coat U domain-containing protein YP_980389.1 153075 R 365044 CDS YP_980390.1 121603061 4690108 complement(153605..155980) 1 NC_008781.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pol:Bpro_0610 fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 155980 4690108 Pnap_0144 Polaromonas naphthalenivorans CJ2 fimbrial biogenesis outer membrane usher protein YP_980390.1 153605 R 365044 CDS YP_980391.1 121603062 4686779 complement(156232..157020) 1 NC_008781.1 KEGG: bur:Bcep18194_A4396 P pilus assembly protein chaperone PapD-like; P pilus assembly protein chaperone PapD-like protein 157020 4686779 Pnap_0145 Polaromonas naphthalenivorans CJ2 P pilus assembly protein chaperone PapD-like protein YP_980391.1 156232 R 365044 CDS YP_980392.1 121603063 4688927 complement(157017..157703) 1 NC_008781.1 PFAM: Spore coat U domain protein; KEGG: ade:Adeh_3602 spore coat U; spore coat U domain-containing protein 157703 4688927 Pnap_0146 Polaromonas naphthalenivorans CJ2 spore coat U domain-containing protein YP_980392.1 157017 R 365044 CDS YP_980393.1 121603064 4686257 158095..159036 1 NC_008781.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 159036 4686257 Pnap_0147 Polaromonas naphthalenivorans CJ2 branched-chain amino acid aminotransferase YP_980393.1 158095 D 365044 CDS YP_980394.1 121603065 4689302 159071..159280 1 NC_008781.1 KEGG: pol:Bpro_0204 hypothetical protein; hypothetical protein 159280 4689302 Pnap_0148 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980394.1 159071 D 365044 CDS YP_980395.1 121603066 4686110 159398..160423 1 NC_008781.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: pol:Bpro_0205 lipopolysaccharide heptosyltransferase II; lipopolysaccharide heptosyltransferase II 160423 4686110 Pnap_0149 Polaromonas naphthalenivorans CJ2 lipopolysaccharide heptosyltransferase II YP_980395.1 159398 D 365044 CDS YP_980396.1 121603067 4686398 complement(160648..161892) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_0207 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 161892 4686398 Pnap_0150 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_980396.1 160648 R 365044 CDS YP_980397.1 121603068 4686428 complement(161900..162625) 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0208 two component transcriptional regulator, winged helix family; two component transcriptional regulator 162625 4686428 Pnap_0151 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_980397.1 161900 R 365044 CDS YP_980398.1 121603069 4686521 complement(162786..164186) 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0209 major facilitator superfamily MFS_1; major facilitator superfamily transporter 164186 4686521 Pnap_0152 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_980398.1 162786 R 365044 CDS YP_980399.1 121603070 4686183 164219..165061 1 NC_008781.1 PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_0210 peptidase M48, Ste24p; peptidase M48, Ste24p 165061 4686183 Pnap_0153 Polaromonas naphthalenivorans CJ2 peptidase M48, Ste24p YP_980399.1 164219 D 365044 CDS YP_980400.1 121603071 4686611 complement(165117..165452) 1 NC_008781.1 hypothetical protein 165452 4686611 Pnap_0154 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980400.1 165117 R 365044 CDS YP_980401.1 121603072 4686649 complement(165477..166067) 1 NC_008781.1 KEGG: bcn:Bcen_3538 hypothetical protein; hypothetical protein 166067 4686649 Pnap_0155 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980401.1 165477 R 365044 CDS YP_980402.1 121603073 4686679 complement(166129..166545) 1 NC_008781.1 KEGG: rso:RSc0443 probable glycin-rich signal peptide protein; hypothetical protein 166545 4686679 Pnap_0156 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980402.1 166129 R 365044 CDS YP_980403.1 121603074 4686943 166550..166822 1 NC_008781.1 hypothetical protein 166822 4686943 Pnap_0157 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980403.1 166550 D 365044 CDS YP_980404.1 121603075 4687419 166913..167155 1 NC_008781.1 hypothetical protein 167155 4687419 Pnap_0158 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980404.1 166913 D 365044 CDS YP_980405.1 121603076 4687233 167736..168044 1 NC_008781.1 hypothetical protein 168044 4687233 Pnap_0159 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980405.1 167736 D 365044 CDS YP_980406.1 121603077 4687990 complement(168106..169476) 1 NC_008781.1 PFAM: aldehyde dehydrogenase; KEGG: rru:Rru_A0462 aldehyde dehydrogenase; aldehyde dehydrogenase 169476 4687990 Pnap_0160 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_980406.1 168106 R 365044 CDS YP_980407.1 121603078 4688049 complement(169633..170742) 1 NC_008781.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rso:RSc1202 probable flavoprotein NADH-dependent oxidoreductase; NADH:flavin oxidoreductase 170742 4688049 Pnap_0161 Polaromonas naphthalenivorans CJ2 NADH:flavin oxidoreductase YP_980407.1 169633 R 365044 CDS YP_980408.1 121603079 4687831 complement(170874..171479) 1 NC_008781.1 PFAM: regulatory protein, TetR; KEGG: bcn:Bcen_3964 transcriptional regulator, TetR family; TetR family transcriptional regulator 171479 4687831 Pnap_0162 Polaromonas naphthalenivorans CJ2 TetR family transcriptional regulator YP_980408.1 170874 R 365044 CDS YP_980409.1 121603080 4688158 171564..172418 1 NC_008781.1 PFAM: protein of unknown function RIO1; KEGG: pol:Bpro_3868 protein of unknown function RIO1; hypothetical protein 172418 4688158 Pnap_0163 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980409.1 171564 D 365044 CDS YP_980410.1 121603081 4688181 complement(172430..174193) 1 NC_008781.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2407 putative ABC-transporter membrane-spanning ATP-binding component; ABC transporter-like protein 174193 4688181 Pnap_0164 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980410.1 172430 R 365044 CDS YP_980411.1 121603082 4688614 complement(174784..176160) 1 NC_008781.1 KEGG: bja:blr1916 putative transposase; putative transposase 176160 4688614 Pnap_0165 Polaromonas naphthalenivorans CJ2 putative transposase YP_980411.1 174784 R 365044 CDS YP_980412.1 121603083 4688847 176615..178423 1 NC_008781.1 KEGG: gsu:GSU0255 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 178423 4688847 Pnap_0166 Polaromonas naphthalenivorans CJ2 multi-sensor signal transduction histidine kinase YP_980412.1 176615 D 365044 CDS YP_980413.1 121603084 4688887 complement(178441..179400) 1 NC_008781.1 KEGG: pol:Bpro_0216 exodeoxyribonuclease III (xth); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 179400 4688887 Pnap_0167 Polaromonas naphthalenivorans CJ2 exodeoxyribonuclease III Xth YP_980413.1 178441 R 365044 CDS YP_980414.1 121603085 4688685 179453..180166 1 NC_008781.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 180166 pyrE 4688685 pyrE Polaromonas naphthalenivorans CJ2 orotate phosphoribosyltransferase YP_980414.1 179453 D 365044 CDS YP_980415.1 121603086 4689169 180176..180847 1 NC_008781.1 KEGG: pol:Bpro_0218 hypothetical protein; hypothetical protein 180847 4689169 Pnap_0169 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980415.1 180176 D 365044 CDS YP_980416.1 121603087 4689203 complement(180938..182395) 1 NC_008781.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 182395 gatB 4689203 gatB Polaromonas naphthalenivorans CJ2 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_980416.1 180938 R 365044 CDS YP_980417.1 121603088 4689513 complement(182392..183924) 1 NC_008781.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 183924 gatA 4689513 gatA Polaromonas naphthalenivorans CJ2 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_980417.1 182392 R 365044 CDS YP_980418.1 121603089 4689539 complement(183921..184220) 1 NC_008781.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 184220 gatC 4689539 gatC Polaromonas naphthalenivorans CJ2 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_980418.1 183921 R 365044 CDS YP_980419.1 121603090 4689263 184476..185564 1 NC_008781.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 185564 4689263 Pnap_0173 Polaromonas naphthalenivorans CJ2 rod shape-determining protein MreB YP_980419.1 184476 D 365044 CDS YP_980420.1 121603091 4690117 185644..186564 1 NC_008781.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 186564 4690117 Pnap_0174 Polaromonas naphthalenivorans CJ2 rod shape-determining protein MreC YP_980420.1 185644 D 365044 CDS YP_980421.1 121603092 4689945 186561..187079 1 NC_008781.1 PFAM: Rod shape-determining protein MreD; KEGG: pol:Bpro_0224 putative rod shape-determining MreD transmembrane protein; rod shape-determining protein MreD 187079 4689945 Pnap_0175 Polaromonas naphthalenivorans CJ2 rod shape-determining protein MreD YP_980421.1 186561 D 365044 CDS YP_980422.1 121603093 4689733 187285..189336 1 NC_008781.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_0225 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 189336 4689733 Pnap_0176 Polaromonas naphthalenivorans CJ2 peptidoglycan glycosyltransferase YP_980422.1 187285 D 365044 CDS YP_980423.1 121603094 4689829 complement(189398..190156) 1 NC_008781.1 PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_0226 protein of unknown function DUF81; hypothetical protein 190156 4689829 Pnap_0177 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980423.1 189398 R 365044 CDS YP_980424.1 121603095 4689900 190631..192079 1 NC_008781.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bxe:Bxe_A4189 ammonium transporter; ammonium transporter 192079 4689900 Pnap_0178 Polaromonas naphthalenivorans CJ2 ammonium transporter YP_980424.1 190631 D 365044 CDS YP_980425.1 121603096 4689121 192110..192517 1 NC_008781.1 KEGG: rme:Rmet_1299 hypothetical protein; hypothetical protein 192517 4689121 Pnap_0179 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980425.1 192110 D 365044 CDS YP_980426.1 121603097 4689116 complement(192546..194282) 1 NC_008781.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pol:Bpro_0229 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 194282 4689116 Pnap_0180 Polaromonas naphthalenivorans CJ2 glucose-methanol-choline oxidoreductase YP_980426.1 192546 R 365044 CDS YP_980427.1 121603098 4689070 194426..195370 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bxe:Bxe_A0014 transcriptional regulator, LysR family; LysR family transcriptional regulator 195370 4689070 Pnap_0181 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_980427.1 194426 D 365044 CDS YP_980428.1 121603099 4687912 195478..196626 1 NC_008781.1 PFAM: protein of unknown function DUF140; KEGG: pol:Bpro_0230 protein of unknown function DUF140; hypothetical protein 196626 4687912 Pnap_0182 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980428.1 195478 D 365044 CDS YP_980429.1 121603100 4688379 196623..197420 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0231 ABC transporter related; ABC transporter-like protein 197420 4688379 Pnap_0183 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980429.1 196623 D 365044 CDS YP_980430.1 121603101 4688357 197434..198366 1 NC_008781.1 PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0232 mammalian cell entry related; hypothetical protein 198366 4688357 Pnap_0184 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980430.1 197434 D 365044 CDS YP_980431.1 121603102 4687613 198363..199067 1 NC_008781.1 KEGG: pol:Bpro_0233 putative lipoprotein; putative lipoprotein 199067 4687613 Pnap_0185 Polaromonas naphthalenivorans CJ2 putative lipoprotein YP_980431.1 198363 D 365044 CDS YP_980432.1 121603103 4686932 complement(199168..199800) 1 NC_008781.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: pol:Bpro_0238 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like proteins 199800 4686932 Pnap_0186 Polaromonas naphthalenivorans CJ2 multiple antibiotic resistance (MarC)-like proteins YP_980432.1 199168 R 365044 CDS YP_980433.1 121603104 4686961 199954..200559 1 NC_008781.1 PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_0240 DsbA oxidoreductase; DSBA oxidoreductase 200559 4686961 Pnap_0187 Polaromonas naphthalenivorans CJ2 DSBA oxidoreductase YP_980433.1 199954 D 365044 CDS YP_980434.1 121603105 4686288 200608..201297 1 NC_008781.1 PFAM: dienelactone hydrolase; KEGG: pol:Bpro_0241 carboxymethylenebutenolidase; carboxymethylenebutenolidase 201297 4686288 Pnap_0188 Polaromonas naphthalenivorans CJ2 carboxymethylenebutenolidase YP_980434.1 200608 D 365044 CDS YP_980435.1 121603106 4686914 complement(201305..201871) 1 NC_008781.1 PFAM: protein of unknown function DUF1003; KEGG: tbd:Tbd_1949 hypothetical protein; hypothetical protein 201871 4686914 Pnap_0189 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980435.1 201305 R 365044 CDS YP_980436.1 121603107 4686492 complement(201912..202682) 1 NC_008781.1 PFAM: protein of unknown function DUF72; KEGG: pfo:Pfl_2381 protein of unknown function DUF72; hypothetical protein 202682 4686492 Pnap_0190 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980436.1 201912 R 365044 CDS YP_980437.1 121603108 4688943 complement(202703..203818) 1 NC_008781.1 PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_0244 Mg2+ transporter protein, CorA-like; Mg2+ transporter protein, CorA family protein 203818 4688943 Pnap_0191 Polaromonas naphthalenivorans CJ2 Mg2+ transporter protein, CorA family protein YP_980437.1 202703 R 365044 CDS YP_980438.1 121603109 4686464 complement(203930..204946) 1 NC_008781.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 204946 4686464 Pnap_0192 Polaromonas naphthalenivorans CJ2 delta-aminolevulinic acid dehydratase YP_980438.1 203930 R 365044 CDS YP_980439.1 121603110 4689549 205309..205737 1 NC_008781.1 PFAM: conserved hypothetical protein 701; KEGG: pol:Bpro_0246 conserved hypothetical protein 701; hypothetical protein 205737 4689549 Pnap_0193 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980439.1 205309 D 365044 CDS YP_980440.1 121603111 4687790 205816..207012 1 NC_008781.1 PFAM: VanZ family protein; KEGG: pol:Bpro_0247 VanZ like protein; VanZ family protein 207012 4687790 Pnap_0194 Polaromonas naphthalenivorans CJ2 VanZ family protein YP_980440.1 205816 D 365044 CDS YP_980441.1 121603112 4689996 207022..207393 1 NC_008781.1 KEGG: pol:Bpro_0248 ferredoxin-like; ferredoxin-like protein 207393 4689996 Pnap_0195 Polaromonas naphthalenivorans CJ2 ferredoxin-like protein YP_980441.1 207022 D 365044 CDS YP_980442.1 121603113 4688425 207513..208157 1 NC_008781.1 KEGG: pol:Bpro_0249 putative transmembrane protein; hypothetical protein 208157 4688425 Pnap_0196 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980442.1 207513 D 365044 CDS YP_980443.1 121603114 4686724 208232..209440 1 NC_008781.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pol:Bpro_0250 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 209440 4686724 Pnap_0197 Polaromonas naphthalenivorans CJ2 serine-type D-Ala-D-Ala carboxypeptidase YP_980443.1 208232 D 365044 CDS YP_980444.1 121603115 4687664 209585..209962 1 NC_008781.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 209962 rpsL 4687664 rpsL Polaromonas naphthalenivorans CJ2 30S ribosomal protein S12 YP_980444.1 209585 D 365044 CDS YP_980445.1 121603116 4686102 210173..210646 1 NC_008781.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 210646 4686102 Pnap_0199 Polaromonas naphthalenivorans CJ2 30S ribosomal protein S7 YP_980445.1 210173 D 365044 CDS YP_980446.1 121603117 4687316 210853..212955 1 NC_008781.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 212955 4687316 Pnap_0200 Polaromonas naphthalenivorans CJ2 elongation factor G YP_980446.1 210853 D 365044 CDS YP_980447.1 121603118 4688087 213103..214293 1 NC_008781.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 214293 4688087 Pnap_0201 Polaromonas naphthalenivorans CJ2 elongation factor Tu YP_980447.1 213103 D 365044 CDS YP_980448.1 121603119 4688862 214321..214635 1 NC_008781.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 214635 rpsJ 4688862 rpsJ Polaromonas naphthalenivorans CJ2 30S ribosomal protein S10 YP_980448.1 214321 D 365044 CDS YP_980449.1 121603120 4689572 214874..215554 1 NC_008781.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 215554 rplC 4689572 rplC Polaromonas naphthalenivorans CJ2 50S ribosomal protein L3 YP_980449.1 214874 D 365044 CDS YP_980450.1 121603121 4689949 215554..216174 1 NC_008781.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 216174 rplD 4689949 rplD Polaromonas naphthalenivorans CJ2 50S ribosomal protein L4 YP_980450.1 215554 D 365044 CDS YP_980451.1 121603122 4689031 216171..216497 1 NC_008781.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 216497 rplW 4689031 rplW Polaromonas naphthalenivorans CJ2 50S ribosomal protein L23 YP_980451.1 216171 D 365044 CDS YP_980452.1 121603123 4689113 216497..217321 1 NC_008781.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 217321 rplB 4689113 rplB Polaromonas naphthalenivorans CJ2 50S ribosomal protein L2 YP_980452.1 216497 D 365044 CDS YP_980453.1 121603124 4688431 217332..217610 1 NC_008781.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 217610 rpsS 4688431 rpsS Polaromonas naphthalenivorans CJ2 30S ribosomal protein S19 YP_980453.1 217332 D 365044 CDS YP_980454.1 121603125 4687545 217620..217949 1 NC_008781.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 217949 rplV 4687545 rplV Polaromonas naphthalenivorans CJ2 50S ribosomal protein L22 YP_980454.1 217620 D 365044 CDS YP_980455.1 121603126 4686917 217962..218849 1 NC_008781.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 218849 rpsC 4686917 rpsC Polaromonas naphthalenivorans CJ2 30S ribosomal protein S3 YP_980455.1 217962 D 365044 CDS YP_980456.1 121603127 4687275 218874..219290 1 NC_008781.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 219290 rplP 4687275 rplP Polaromonas naphthalenivorans CJ2 50S ribosomal protein L16 YP_980456.1 218874 D 365044 CDS YP_980457.1 121603128 4687858 219307..219510 1 NC_008781.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 219510 4687858 Pnap_0211 Polaromonas naphthalenivorans CJ2 50S ribosomal protein L29 YP_980457.1 219307 D 365044 CDS YP_980458.1 121603129 4689709 219510..219779 1 NC_008781.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 219779 rpsQ 4689709 rpsQ Polaromonas naphthalenivorans CJ2 30S ribosomal protein S17 YP_980458.1 219510 D 365044 CDS YP_980459.1 121603130 4686872 219963..220469 1 NC_008781.1 PFAM: Redoxin domain protein; KEGG: pol:Bpro_0266 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; redoxin domain-containing protein 220469 4686872 Pnap_0213 Polaromonas naphthalenivorans CJ2 redoxin domain-containing protein YP_980459.1 219963 D 365044 CDS YP_980460.1 121603131 4686736 complement(220539..221027) 1 NC_008781.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_0267 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 221027 4686736 Pnap_0214 Polaromonas naphthalenivorans CJ2 N-acetyltransferase GCN5 YP_980460.1 220539 R 365044 CDS YP_980461.1 121603132 4687304 complement(221085..221771) 1 NC_008781.1 PFAM: cytochrome B561; KEGG: pol:Bpro_0268 cytochrome b561; cytochrome B561 221771 4687304 Pnap_0215 Polaromonas naphthalenivorans CJ2 cytochrome B561 YP_980461.1 221085 R 365044 CDS YP_980462.1 121603133 4686348 221967..222422 1 NC_008781.1 PFAM: cytochrome c, class II; KEGG: pol:Bpro_0269 cytochrome c, class II; class II cytochrome c 222422 4686348 Pnap_0216 Polaromonas naphthalenivorans CJ2 class II cytochrome c YP_980462.1 221967 D 365044 CDS YP_980463.1 121603134 4686079 complement(222550..223065) 1 NC_008781.1 PFAM: Redoxin domain protein; KEGG: pol:Bpro_0270 putative transmembrane protein; redoxin domain-containing protein 223065 4686079 Pnap_0217 Polaromonas naphthalenivorans CJ2 redoxin domain-containing protein YP_980463.1 222550 R 365044 CDS YP_980464.1 121603135 4686121 223079..223783 1 NC_008781.1 KEGG: pol:Bpro_0271 hypothetical protein; hypothetical protein 223783 4686121 Pnap_0218 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980464.1 223079 D 365044 CDS YP_980465.1 121603136 4686498 223886..225166 1 NC_008781.1 KEGG: rfr:Rfer_1327 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-acetylhomoserine/O-acetylserine sulfhydrylase 225166 4686498 Pnap_0219 Polaromonas naphthalenivorans CJ2 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_980465.1 223886 D 365044 CDS YP_980466.1 121603137 4686546 225345..225941 1 NC_008781.1 PFAM: OmpW family protein; KEGG: pol:Bpro_0280 OmpW; OmpW family protein 225941 4686546 Pnap_0220 Polaromonas naphthalenivorans CJ2 OmpW family protein YP_980466.1 225345 D 365044 CDS YP_980467.1 121603138 4686192 225998..227326 1 NC_008781.1 PFAM: protein of unknown function DUF445; KEGG: bpe:BP2153 hypothetical protein; hypothetical protein 227326 4686192 Pnap_0221 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980467.1 225998 D 365044 CDS YP_980468.1 121603139 4686645 complement(227418..228149) 1 NC_008781.1 KEGG: pol:Bpro_0278 putative esterase; putative esterase 228149 4686645 Pnap_0222 Polaromonas naphthalenivorans CJ2 putative esterase YP_980468.1 227418 R 365044 CDS YP_980469.1 121603140 4686669 complement(228149..229396) 1 NC_008781.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0281 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 229396 4686669 Pnap_0223 Polaromonas naphthalenivorans CJ2 L-carnitine dehydratase/bile acid-inducible protein F YP_980469.1 228149 R 365044 CDS YP_980470.1 121603141 4687285 229582..230601 1 NC_008781.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: bcn:Bcen_4095 transcriptional regulator, LacI family; periplasmic-binding protein/LacI transcriptional regulator 230601 4687285 Pnap_0224 Polaromonas naphthalenivorans CJ2 periplasmic-binding protein/LacI transcriptional regulator YP_980470.1 229582 D 365044 CDS YP_980471.1 121603142 4687309 complement(230702..231652) 1 NC_008781.1 KEGG: hch:HCH_06066 hypothetical protein; hypothetical protein 231652 4687309 Pnap_0225 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980471.1 230702 R 365044 CDS YP_980472.1 121603143 4687173 231975..233042 1 NC_008781.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ccr:CC1137 transcriptional regulator, LacI family; periplasmic-binding protein/LacI transcriptional regulator 233042 4687173 Pnap_0226 Polaromonas naphthalenivorans CJ2 periplasmic-binding protein/LacI transcriptional regulator YP_980472.1 231975 D 365044 CDS YP_980473.1 121603144 4687472 233340..234614 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 1; KEGG: atc:AGR_pAT_379 putative sugar transport sugar binding protein; extracellular solute-binding protein 234614 4687472 Pnap_0227 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_980473.1 233340 D 365044 CDS YP_980474.1 121603145 4687991 234667..235974 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 1; KEGG: atc:AGR_pAT_379 putative sugar transport sugar binding protein; extracellular solute-binding protein 235974 4687991 Pnap_0228 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_980474.1 234667 D 365044 CDS YP_980475.1 121603146 4688042 235990..236928 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00048 probable sucrose ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 236928 4688042 Pnap_0229 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_980475.1 235990 D 365044 CDS YP_980476.1 121603147 4688138 236925..237821 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_376 sugar ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 237821 4688138 Pnap_0230 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_980476.1 236925 D 365044 CDS YP_980477.1 121603148 4687854 237855..238946 1 NC_008781.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06906 ABC-type sugar transport system, ATPase components; ABC transporter-like protein 238946 4687854 Pnap_0231 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980477.1 237855 D 365044 CDS YP_980478.1 121603149 4688180 238956..240437 1 NC_008781.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA; sucrose phosphorylase 240437 4688180 Pnap_0232 Polaromonas naphthalenivorans CJ2 sucrose phosphorylase YP_980478.1 238956 D 365044 CDS YP_980479.1 121603150 4688219 complement(240723..241160) 1 NC_008781.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_2826 UspA; UspA domain-containing protein 241160 4688219 Pnap_0233 Polaromonas naphthalenivorans CJ2 UspA domain-containing protein YP_980479.1 240723 R 365044 CDS YP_980480.1 121603151 4688650 complement(241187..241393) 1 NC_008781.1 PFAM: protein of unknown function DUF1458; KEGG: pol:Bpro_0507 protein of unknown function DUF1458; hypothetical protein 241393 4688650 Pnap_0234 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980480.1 241187 R 365044 CDS YP_980481.1 121603152 4688890 241592..242113 1 NC_008781.1 KEGG: pol:Bpro_0295 hypothetical protein; hypothetical protein 242113 4688890 Pnap_0235 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980481.1 241592 D 365044 CDS YP_980482.1 121603153 4688929 242106..243377 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0296 major facilitator superfamily MFS_1; major facilitator superfamily transporter 243377 4688929 Pnap_0236 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_980482.1 242106 D 365044 CDS YP_980483.1 121603154 4689374 243374..243817 1 NC_008781.1 PFAM: PTS system fructose subfamily IIA component; KEGG: pol:Bpro_0297 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA 243817 4689374 Pnap_0237 Polaromonas naphthalenivorans CJ2 PTS system fructose subfamily transporter subunit IIA YP_980483.1 243374 D 365044 CDS YP_980484.1 121603155 4689184 243786..244055 1 NC_008781.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pol:Bpro_0298 HPrNtr; phosphotransferase system, phosphocarrier protein HPr 244055 4689184 Pnap_0238 Polaromonas naphthalenivorans CJ2 phosphotransferase system, phosphocarrier protein HPr YP_980484.1 243786 D 365044 CDS YP_980485.1 121603156 4689456 244239..246014 1 NC_008781.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: pol:Bpro_0299 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 246014 4689456 Pnap_0239 Polaromonas naphthalenivorans CJ2 phosphoenolpyruvate-protein phosphotransferase YP_980485.1 244239 D 365044 CDS YP_980486.1 121603157 4689498 complement(246138..246980) 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_0311 protein of unknown function DUF6, transmembrane; hypothetical protein 246980 4689498 Pnap_0240 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980486.1 246138 R 365044 CDS YP_980487.1 121603158 4689250 247236..247424 1 NC_008781.1 hypothetical protein 247424 4689250 Pnap_0241 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980487.1 247236 D 365044 CDS YP_980488.1 121603159 4689281 complement(247458..248456) 1 NC_008781.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 248456 4689281 Pnap_0242 Polaromonas naphthalenivorans CJ2 lipoyl synthase YP_980488.1 247458 R 365044 CDS YP_980489.1 121603160 4689639 complement(248496..249170) 1 NC_008781.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 249170 4689639 Pnap_0243 Polaromonas naphthalenivorans CJ2 lipoate-protein ligase B YP_980489.1 248496 R 365044 CDS YP_980490.1 121603161 4688628 complement(249304..250065) 1 NC_008781.1 TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: xcv:XCVb0013 putative metal-binding protein, sec-C motif; yecA family protein 250065 4688628 Pnap_0244 Polaromonas naphthalenivorans CJ2 yecA family protein YP_980490.1 249304 R 365044 CDS YP_980491.1 121603162 4689777 complement(250139..250450) 1 NC_008781.1 PFAM: protein of unknown function DUF493; KEGG: pol:Bpro_0316 protein of unknown function DUF493; hypothetical protein 250450 4689777 Pnap_0245 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980491.1 250139 R 365044 CDS YP_980492.1 121603163 4689221 complement(250453..251364) 1 NC_008781.1 PFAM: aminotransferase, class IV; KEGG: pol:Bpro_0317 aminotransferase, class IV; class IV aminotransferase 251364 4689221 Pnap_0246 Polaromonas naphthalenivorans CJ2 class IV aminotransferase YP_980492.1 250453 R 365044 CDS YP_980493.1 121603164 4689840 complement(251459..251902) 1 NC_008781.1 KEGG: pol:Bpro_0319 hypothetical protein; hypothetical protein 251902 4689840 Pnap_0247 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980493.1 251459 R 365044 CDS YP_980494.1 121603165 4689863 252163..252714 1 NC_008781.1 KEGG: rfr:Rfer_0113 putative ATP synthase protein I; putative ATP synthase protein I 252714 4689863 Pnap_0248 Polaromonas naphthalenivorans CJ2 putative ATP synthase protein I YP_980494.1 252163 D 365044 CDS YP_980495.1 121603166 4689336 252735..253628 1 NC_008781.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 253628 4689336 Pnap_0249 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit A YP_980495.1 252735 D 365044 CDS YP_980496.1 121603167 4689100 253702..253950 1 NC_008781.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 253950 4689100 Pnap_0250 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit C YP_980496.1 253702 D 365044 CDS YP_980497.1 121603168 4688497 253991..254461 1 NC_008781.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 254461 4688497 Pnap_0251 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit B YP_980497.1 253991 D 365044 CDS YP_980498.1 121603169 4687955 254483..255022 1 NC_008781.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 255022 4687955 Pnap_0252 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit delta YP_980498.1 254483 D 365044 CDS YP_980499.1 121603170 4687746 255082..256635 1 NC_008781.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 256635 4687746 Pnap_0253 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit alpha YP_980499.1 255082 D 365044 CDS YP_980500.1 121603171 4687632 256691..257557 1 NC_008781.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 257557 4687632 Pnap_0254 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit gamma YP_980500.1 256691 D 365044 CDS YP_980501.1 121603172 4687576 257597..259021 1 NC_008781.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 259021 4687576 Pnap_0255 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit beta YP_980501.1 257597 D 365044 CDS YP_980502.1 121603173 4687677 259103..259519 1 NC_008781.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 259519 atpC 4687677 atpC Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit epsilon YP_980502.1 259103 D 365044 CDS YP_980503.1 121603174 4686895 complement(259641..260171) 1 NC_008781.1 PFAM: protein of unknown function DUF477; KEGG: pol:Bpro_0329 protein of unknown function DUF477; hypothetical protein 260171 4686895 Pnap_0257 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980503.1 259641 R 365044 CDS YP_980504.1 121603175 4686294 complement(260180..261112) 1 NC_008781.1 PFAM: protein of unknown function DUF477; KEGG: pol:Bpro_0330 protein of unknown function DUF477; hypothetical protein 261112 4686294 Pnap_0258 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980504.1 260180 R 365044 CDS YP_980505.1 121603176 4686864 complement(261125..261724) 1 NC_008781.1 PFAM: LemA family protein; KEGG: pol:Bpro_0331 LemA; LemA family protein 261724 4686864 Pnap_0259 Polaromonas naphthalenivorans CJ2 LemA family protein YP_980505.1 261125 R 365044 CDS YP_980506.1 121603177 4686998 261839..262285 1 NC_008781.1 KEGG: pol:Bpro_0333 hypothetical protein; hypothetical protein 262285 4686998 Pnap_0260 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980506.1 261839 D 365044 CDS YP_980507.1 121603178 4686127 262290..263309 1 NC_008781.1 KEGG: pol:Bpro_0334 hydrolase of the alpha/beta-hydrolase fold-like; alpha/beta hydrolase 263309 4686127 Pnap_0261 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase YP_980507.1 262290 D 365044 CDS YP_980508.1 121603179 4686466 263367..263927 1 NC_008781.1 KEGG: pol:Bpro_0335 hypothetical protein; hypothetical protein 263927 4686466 Pnap_0262 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980508.1 263367 D 365044 CDS YP_980509.1 121603180 4687051 complement(264032..264913) 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_0336 cytochrome c, class I; class I cytochrome c 264913 4687051 Pnap_0263 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_980509.1 264032 R 365044 CDS YP_980510.1 121603181 4688045 complement(265468..265785) 1 NC_008781.1 PFAM: High potential iron-sulfur protein; KEGG: bxe:Bxe_A4333 putative high potential iron-sulfur protein; high potential iron-sulfur protein 265785 4688045 Pnap_0264 Polaromonas naphthalenivorans CJ2 high potential iron-sulfur protein YP_980510.1 265468 R 365044 CDS YP_980511.1 121603182 4686333 266396..267367 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0596 uncharacterized protein UPF0065; hypothetical protein 267367 4686333 Pnap_0265 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980511.1 266396 D 365044 CDS YP_980512.1 121603183 4688447 267397..267774 1 NC_008781.1 KEGG: pol:Bpro_3606 hypothetical protein; hypothetical protein 267774 4688447 Pnap_0266 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980512.1 267397 D 365044 CDS YP_980513.1 121603184 4689083 complement(267782..269473) 1 NC_008781.1 PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_04499 long-chain acyl-CoA synthetases (AMP-forming); AMP-dependent synthetase and ligase 269473 4689083 Pnap_0267 Polaromonas naphthalenivorans CJ2 AMP-dependent synthetase and ligase YP_980513.1 267782 R 365044 CDS YP_980514.1 121603185 4690085 269697..270185 1 NC_008781.1 KEGG: pol:Bpro_0388 putative lipoprotein transmembrane; putative lipoprotein transmembrane 270185 4690085 Pnap_0268 Polaromonas naphthalenivorans CJ2 putative lipoprotein transmembrane YP_980514.1 269697 D 365044 CDS YP_980515.1 121603186 4688211 complement(270195..271421) 1 NC_008781.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0389 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 271421 4688211 Pnap_0269 Polaromonas naphthalenivorans CJ2 Bcr/CflA subfamily drug resistance transporter YP_980515.1 270195 R 365044 CDS YP_980516.1 121603187 4686061 complement(271418..272278) 1 NC_008781.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_0390 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase 272278 4686061 Pnap_0270 Polaromonas naphthalenivorans CJ2 uroporphyrin-III C/tetrapyrrole methyltransferase YP_980516.1 271418 R 365044 CDS YP_980517.1 121603188 4688867 272329..272790 1 NC_008781.1 PFAM: protein of unknown function UPF0102; KEGG: pol:Bpro_0391 protein of unknown function UPF0102; hypothetical protein 272790 4688867 Pnap_0271 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980517.1 272329 D 365044 CDS YP_980518.1 121603189 4687668 272903..273502 1 NC_008781.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 273502 4687668 Pnap_0272 Polaromonas naphthalenivorans CJ2 phosphoheptose isomerase YP_980518.1 272903 D 365044 CDS YP_980519.1 121603190 4688041 273499..274164 1 NC_008781.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0393 transport-associated; transporter 274164 4688041 Pnap_0273 Polaromonas naphthalenivorans CJ2 transporter YP_980519.1 273499 D 365044 CDS YP_980520.1 121603191 4689631 complement(274213..275115) 1 NC_008781.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_0394 2-hydroxy-3-oxopropionate reductase; 2-hydroxy-3-oxopropionate reductase 275115 4689631 Pnap_0274 Polaromonas naphthalenivorans CJ2 2-hydroxy-3-oxopropionate reductase YP_980520.1 274213 R 365044 CDS YP_980521.1 121603192 4688153 275673..276632 1 NC_008781.1 PFAM: transposase, IS4 family protein; KEGG: bte:BTH_II0087 transposase; transposase, IS4 family protein 276632 4688153 Pnap_0276 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_980521.1 275673 D 365044 CDS YP_980522.1 121603193 4688662 complement(277439..278071) 1 NC_008781.1 PFAM: cyclic nucleotide-binding; KEGG: pfo:Pfl_1398 cyclic nucleotide-binding (cNMP-BD) protein; cyclic nucleotide-binding protein 278071 4688662 Pnap_0277 Polaromonas naphthalenivorans CJ2 cyclic nucleotide-binding protein YP_980522.1 277439 R 365044 CDS YP_980523.1 121603194 4687337 complement(278104..279147) 1 NC_008781.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0396 twitching motility protein; twitching motility protein 279147 4687337 Pnap_0278 Polaromonas naphthalenivorans CJ2 twitching motility protein YP_980523.1 278104 R 365044 CDS YP_980524.1 121603195 4686585 279280..280515 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB 280515 4686585 Pnap_0279 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_980524.1 279280 D 365044 CDS YP_980525.1 121603196 4687274 280508..281287 1 NC_008781.1 PFAM: alanine racemase domain protein; KEGG: pol:Bpro_0397 protein of unknown function UPF0001; alanine racemase domain-containing protein 281287 4687274 Pnap_0280 Polaromonas naphthalenivorans CJ2 alanine racemase domain-containing protein YP_980525.1 280508 D 365044 CDS YP_980526.1 121603197 4687449 complement(281293..283803) 1 NC_008781.1 KEGG: pol:Bpro_0428 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 283803 4687449 Pnap_0281 Polaromonas naphthalenivorans CJ2 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_980526.1 281293 R 365044 CDS YP_980527.1 121603198 4688724 284971..285249 1 NC_008781.1 hypothetical protein 285249 4688724 Pnap_0283 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980527.1 284971 D 365044 CDS YP_980528.1 121603199 4688591 285312..285641 1 NC_008781.1 KEGG: pol:Bpro_0429 hypothetical protein; hypothetical protein 285641 4688591 Pnap_0284 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980528.1 285312 D 365044 CDS YP_980529.1 121603200 4688641 285691..287121 1 NC_008781.1 PFAM: glycosyl transferase, family 2; KEGG: reu:Reut_B4949 glycosyl transferase, family 2; glycosyl transferase family protein 287121 4688641 Pnap_0285 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_980529.1 285691 D 365044 CDS YP_980530.1 121603201 4689411 287118..288161 1 NC_008781.1 KEGG: reu:Reut_B4948 hypothetical protein; hypothetical protein 288161 4689411 Pnap_0286 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980530.1 287118 D 365044 CDS YP_980531.1 121603202 4689466 288158..289177 1 NC_008781.1 KEGG: bcn:Bcen_0847 hypothetical protein; hypothetical protein 289177 4689466 Pnap_0287 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980531.1 288158 D 365044 CDS YP_980532.1 121603203 4690141 289239..290069 1 NC_008781.1 KEGG: bte:BTH_II0344 lipoprotein, putative; putative lipoprotein 290069 4690141 Pnap_0288 Polaromonas naphthalenivorans CJ2 putative lipoprotein YP_980532.1 289239 D 365044 CDS YP_980533.1 121603204 4690209 290079..290918 1 NC_008781.1 KEGG: bte:BTH_II0345 hypothetical protein; hypothetical protein 290918 4690209 Pnap_0289 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980533.1 290079 D 365044 CDS YP_980534.1 121603205 4689779 291076..291633 1 NC_008781.1 PFAM: protein of unknown function DUF583; KEGG: pol:Bpro_0430 protein of unknown function DUF583; hypothetical protein 291633 4689779 Pnap_0290 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980534.1 291076 D 365044 CDS YP_980535.1 121603206 4689614 complement(291738..292463) 1 NC_008781.1 PFAM: LrgB family protein; KEGG: pol:Bpro_0431 LrgB-like protein; LrgB family protein 292463 4689614 Pnap_0291 Polaromonas naphthalenivorans CJ2 LrgB family protein YP_980535.1 291738 R 365044 CDS YP_980536.1 121603207 4689794 complement(292456..292839) 1 NC_008781.1 PFAM: LrgA family protein; KEGG: pol:Bpro_0432 LrgA; LrgA family protein 292839 4689794 Pnap_0292 Polaromonas naphthalenivorans CJ2 LrgA family protein YP_980536.1 292456 R 365044 CDS YP_980537.1 121603208 4688995 complement(292879..294381) 1 NC_008781.1 PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0433 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 294381 4688995 Pnap_0293 Polaromonas naphthalenivorans CJ2 FAD linked oxidase domain-containing protein YP_980537.1 292879 R 365044 CDS YP_980538.1 121603209 4686838 294562..295128 1 NC_008781.1 PFAM: protein of unknown function DUF820; KEGG: gvi:gll1561 hypothetical protein; hypothetical protein 295128 4686838 Pnap_0294 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980538.1 294562 D 365044 CDS YP_980539.1 121603210 4686243 complement(295225..295557) 1 NC_008781.1 hypothetical protein 295557 4686243 Pnap_0295 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980539.1 295225 R 365044 CDS YP_980540.1 121603211 4687636 complement(295621..296607) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0437 transcriptional regulator, LysR family; LysR family transcriptional regulator 296607 4687636 Pnap_0296 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_980540.1 295621 R 365044 CDS YP_980541.1 121603212 4687601 complement(296615..297463) 1 NC_008781.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 297463 purU 4687601 purU Polaromonas naphthalenivorans CJ2 formyltetrahydrofolate deformylase YP_980541.1 296615 R 365044 CDS YP_980542.1 121603213 4686981 complement(297499..298380) 1 NC_008781.1 KEGG: pol:Bpro_0441 hypothetical protein; hypothetical protein 298380 4686981 Pnap_0298 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980542.1 297499 R 365044 CDS YP_980543.1 121603214 4687456 complement(298517..299653) 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RS03096 putative Leu/Ile/Val-binding lipoprotein transmembrane; extracellular ligand-binding receptor 299653 4687456 Pnap_0299 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_980543.1 298517 R 365044 CDS YP_980544.1 121603215 4687634 complement(299880..300161) 1 NC_008781.1 KEGG: pol:Bpro_0443 hypothetical protein; hypothetical protein 300161 4687634 Pnap_0300 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980544.1 299880 R 365044 CDS YP_980545.1 121603216 4687983 complement(300238..301428) 1 NC_008781.1 KEGG: pol:Bpro_0444 hypothetical protein; hypothetical protein 301428 4687983 Pnap_0301 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980545.1 300238 R 365044 CDS YP_980546.1 121603217 4687768 301458..302441 1 NC_008781.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_0446 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 302441 4687768 Pnap_0302 Polaromonas naphthalenivorans CJ2 fumarylacetoacetate (FAA) hydrolase YP_980546.1 301458 D 365044 CDS YP_980547.1 121603218 4687926 complement(302530..304749) 1 NC_008781.1 KEGG: bte:BTH_II0346 hypothetical protein; hypothetical protein 304749 4687926 Pnap_0303 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980547.1 302530 R 365044 CDS YP_980548.1 121603219 4686504 305021..305269 1 NC_008781.1 hypothetical protein 305269 4686504 Pnap_0304 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980548.1 305021 D 365044 CDS YP_980549.1 121603220 4688595 305357..306346 1 NC_008781.1 KEGG: pol:Bpro_0449 hypothetical protein; hypothetical protein 306346 4688595 Pnap_0305 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980549.1 305357 D 365044 CDS YP_980550.1 121603221 4690004 306390..307733 1 NC_008781.1 PFAM: domain of unknown function DUF1745; KEGG: pol:Bpro_0450 hypothetical protein; hypothetical protein 307733 4690004 Pnap_0306 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980550.1 306390 D 365044 CDS YP_980551.1 121603222 4686336 complement(307738..308469) 1 NC_008781.1 SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0454 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 308469 4686336 Pnap_0307 Polaromonas naphthalenivorans CJ2 helix-turn-helix domain-containing protein YP_980551.1 307738 R 365044 CDS YP_980552.1 121603223 4686299 308593..309492 1 NC_008781.1 KEGG: pol:Bpro_0456 hypothetical protein; hypothetical protein 309492 4686299 Pnap_0308 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980552.1 308593 D 365044 CDS YP_980553.1 121603224 4686358 309489..311465 1 NC_008781.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0457 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 311465 4686358 Pnap_0309 Polaromonas naphthalenivorans CJ2 phospholipid/glycerol acyltransferase YP_980553.1 309489 D 365044 CDS YP_980554.1 121603225 4686443 311612..312070 1 NC_008781.1 KEGG: pol:Bpro_0459 hypothetical protein; hypothetical protein 312070 4686443 Pnap_0310 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980554.1 311612 D 365044 CDS YP_980555.1 121603226 4686078 312085..312903 1 NC_008781.1 KEGG: pol:Bpro_0460 hypothetical protein; hypothetical protein 312903 4686078 Pnap_0311 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980555.1 312085 D 365044 CDS YP_980556.1 121603227 4686543 312927..314201 1 NC_008781.1 KEGG: tbd:Tbd_2217 hypothetical protein; hypothetical protein 314201 4686543 Pnap_0312 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980556.1 312927 D 365044 CDS YP_980557.1 121603228 4686168 314236..314685 1 NC_008781.1 PFAM: YiaAB two helix domain protein; KEGG: pol:Bpro_0458 hypothetical protein; YiaAB two helix domain-containing protein 314685 4686168 Pnap_0313 Polaromonas naphthalenivorans CJ2 YiaAB two helix domain-containing protein YP_980557.1 314236 D 365044 CDS YP_980558.1 121603229 4686196 complement(314705..315595) 1 NC_008781.1 hypothetical protein 315595 4686196 Pnap_0314 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980558.1 314705 R 365044 CDS YP_980559.1 121603230 4686587 315758..316816 1 NC_008781.1 KEGG: pol:Bpro_0461 hypothetical protein; hypothetical protein 316816 4686587 Pnap_0315 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980559.1 315758 D 365044 CDS YP_980560.1 121603231 4686654 316942..318291 1 NC_008781.1 KEGG: pol:Bpro_4510 hypothetical protein; hypothetical protein 318291 4686654 Pnap_0316 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980560.1 316942 D 365044 CDS YP_980561.1 121603232 4686660 complement(318385..320175) 1 NC_008781.1 KEGG: pol:Bpro_0463 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like; glycosyltransferase 320175 4686660 Pnap_0317 Polaromonas naphthalenivorans CJ2 glycosyltransferase YP_980561.1 318385 R 365044 CDS YP_980562.1 121603233 4686686 complement(320195..320683) 1 NC_008781.1 PFAM: GtrA family protein; KEGG: pol:Bpro_0464 GtrA-like protein; GtrA family protein 320683 4686686 Pnap_0318 Polaromonas naphthalenivorans CJ2 GtrA family protein YP_980562.1 320195 R 365044 CDS YP_980563.1 121603234 4687266 complement(320683..321924) 1 NC_008781.1 PFAM: glycosyl transferase, family 9; KEGG: pol:Bpro_0465 glycosyl transferase, family 9; glycosyl transferase family protein 321924 4687266 Pnap_0319 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_980563.1 320683 R 365044 CDS YP_980564.1 121603235 4687273 complement(321928..323091) 1 NC_008781.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 323091 tgt 4687273 tgt Polaromonas naphthalenivorans CJ2 queuine tRNA-ribosyltransferase YP_980564.1 321928 R 365044 CDS YP_980565.1 121603236 4687331 complement(323114..324172) 1 NC_008781.1 TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: pol:Bpro_0467 S-adenosylmethionine; S-adenosylmethionine--tRNA-ribosyltransferase- isomerase 324172 4687331 Pnap_0321 Polaromonas naphthalenivorans CJ2 S-adenosylmethionine--tRNA-ribosyltransferase- isomerase YP_980565.1 323114 R 365044 CDS YP_980566.1 121603237 4686962 324192..326339 1 NC_008781.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 326339 4686962 Pnap_0322 Polaromonas naphthalenivorans CJ2 ATP-dependent DNA helicase RecG YP_980566.1 324192 D 365044 CDS YP_980567.1 121603238 4687341 complement(326359..326760) 1 NC_008781.1 hypothetical protein 326760 4687341 Pnap_0323 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980567.1 326359 R 365044 CDS YP_980568.1 121603239 4687345 326904..327860 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0472 transcriptional regulator, LysR family; LysR family transcriptional regulator 327860 4687345 Pnap_0324 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_980568.1 326904 D 365044 CDS YP_980569.1 121603240 4687367 327973..328497 1 NC_008781.1 PFAM: Ferritin, Dps family protein; KEGG: ana:all4145 probable DNA-binding stress protein; Ferritin, Dps family protein 328497 4687367 Pnap_0325 Polaromonas naphthalenivorans CJ2 Ferritin, Dps family protein YP_980569.1 327973 D 365044 CDS YP_980570.1 121603241 4687368 328532..329401 1 NC_008781.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: pol:Bpro_0474 4-hydroxybenzoate polyprenyl transferase; 4-hydroxybenzoate polyprenyltransferase 329401 4687368 Pnap_0326 Polaromonas naphthalenivorans CJ2 4-hydroxybenzoate polyprenyltransferase YP_980570.1 328532 D 365044 CDS YP_980571.1 121603242 4687381 complement(329984..330823) 1 NC_008781.1 KEGG: pol:Bpro_0475 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase 330823 4687381 Pnap_0327 Polaromonas naphthalenivorans CJ2 pyrroline-5-carboxylate reductase YP_980571.1 329984 R 365044 CDS YP_980572.1 121603243 4687193 complement(330919..332412) 1 NC_008781.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: pol:Bpro_0476 glycerol kinase; glycerol kinase 332412 4687193 Pnap_0328 Polaromonas naphthalenivorans CJ2 glycerol kinase YP_980572.1 330919 R 365044 CDS YP_980573.1 121603244 4687961 332614..334200 1 NC_008781.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0484 FAD dependent oxidoreductase; FAD dependent oxidoreductase 334200 4687961 Pnap_0329 Polaromonas naphthalenivorans CJ2 FAD dependent oxidoreductase YP_980573.1 332614 D 365044 CDS YP_980574.1 121603245 4687972 334415..334783 1 NC_008781.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 334783 rplN 4687972 rplN Polaromonas naphthalenivorans CJ2 50S ribosomal protein L14 YP_980574.1 334415 D 365044 CDS YP_980575.1 121603246 4688059 334796..335116 1 NC_008781.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 335116 rplX 4688059 rplX Polaromonas naphthalenivorans CJ2 50S ribosomal protein L24 YP_980575.1 334796 D 365044 CDS YP_980576.1 121603247 4688152 335119..335658 1 NC_008781.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 335658 rplE 4688152 rplE Polaromonas naphthalenivorans CJ2 50S ribosomal protein L5 YP_980576.1 335119 D 365044 CDS YP_980577.1 121603248 4688125 335667..335972 1 NC_008781.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 335972 rpsN 4688125 rpsN Polaromonas naphthalenivorans CJ2 30S ribosomal protein S14 YP_980577.1 335667 D 365044 CDS YP_980578.1 121603249 4688162 335991..336386 1 NC_008781.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 336386 rpsH 4688162 rpsH Polaromonas naphthalenivorans CJ2 30S ribosomal protein S8 YP_980578.1 335991 D 365044 CDS YP_980579.1 121603250 4688170 336411..336944 1 NC_008781.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 336944 rplF 4688170 rplF Polaromonas naphthalenivorans CJ2 50S ribosomal protein L6 YP_980579.1 336411 D 365044 CDS YP_980580.1 121603251 4688224 336956..337321 1 NC_008781.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 337321 rplR 4688224 rplR Polaromonas naphthalenivorans CJ2 50S ribosomal protein L18 YP_980580.1 336956 D 365044 CDS YP_980581.1 121603252 4688726 337339..337857 1 NC_008781.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 337857 rpsE 4688726 rpsE Polaromonas naphthalenivorans CJ2 30S ribosomal protein S5 YP_980581.1 337339 D 365044 CDS YP_980582.1 121603253 4688230 337871..338053 1 NC_008781.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 338053 rpmD 4688230 rpmD Polaromonas naphthalenivorans CJ2 50S ribosomal protein L30 YP_980582.1 337871 D 365044 CDS YP_980583.1 121603254 4688732 338067..338498 1 NC_008781.1 PFAM: ribosomal protein L15; KEGG: pol:Bpro_0494 ribosomal protein L15; 50S ribosomal protein L15 338498 4688732 Pnap_0339 Polaromonas naphthalenivorans CJ2 50S ribosomal protein L15 YP_980583.1 338067 D 365044 CDS YP_980584.1 121603255 4688766 338518..339825 1 NC_008781.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 339825 secY 4688766 secY Polaromonas naphthalenivorans CJ2 preprotein translocase subunit SecY YP_980584.1 338518 D 365044 CDS YP_980585.1 121603256 4688802 339911..340024 1 NC_008781.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 340024 rpmJ 4688802 rpmJ Polaromonas naphthalenivorans CJ2 50S ribosomal protein L36 YP_980585.1 339911 D 365044 CDS YP_980586.1 121603257 4688612 340050..340415 1 NC_008781.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 340415 rpsM 4688612 rpsM Polaromonas naphthalenivorans CJ2 30S ribosomal protein S13 YP_980586.1 340050 D 365044 CDS YP_980587.1 121603258 4688824 340429..340833 1 NC_008781.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 340833 4688824 Pnap_0343 Polaromonas naphthalenivorans CJ2 30S ribosomal protein S11 YP_980587.1 340429 D 365044 CDS YP_980588.1 121603259 4688859 340964..341587 1 NC_008781.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 341587 rpsD 4688859 rpsD Polaromonas naphthalenivorans CJ2 30S ribosomal protein S4 YP_980588.1 340964 D 365044 CDS YP_980589.1 121603260 4688858 341683..342675 1 NC_008781.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 342675 4688858 Pnap_0345 Polaromonas naphthalenivorans CJ2 DNA-directed RNA polymerase subunit alpha YP_980589.1 341683 D 365044 CDS YP_980590.1 121603261 4688866 342759..343160 1 NC_008781.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 343160 rplQ 4688866 rplQ Polaromonas naphthalenivorans CJ2 50S ribosomal protein L17 YP_980590.1 342759 D 365044 CDS YP_980591.1 121603262 4688771 343429..343887 1 NC_008781.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein 343887 4688771 Pnap_0347 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980591.1 343429 D 365044 CDS YP_980592.1 121603263 4689364 343907..344383 1 NC_008781.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 344383 4689364 Pnap_0348 Polaromonas naphthalenivorans CJ2 putative transposase of insertion sequence ISRm10-1 YP_980592.1 343907 D 365044 CDS YP_980593.1 121603264 4689439 complement(344375..345706) 1 NC_008781.1 PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4288 sodium/hydrogen exchanger; sodium/hydrogen exchanger 345706 4689439 Pnap_0349 Polaromonas naphthalenivorans CJ2 sodium/hydrogen exchanger YP_980593.1 344375 R 365044 CDS YP_980594.1 121603265 4689410 complement(345932..347137) 1 NC_008781.1 PFAM: phospholipase A1; KEGG: pol:Bpro_4284 phospholipase A1; phospholipase A1 347137 4689410 Pnap_0350 Polaromonas naphthalenivorans CJ2 phospholipase A1 YP_980594.1 345932 R 365044 CDS YP_980595.1 121603266 4689176 complement(347159..347731) 1 NC_008781.1 KEGG: pol:Bpro_4283 hypothetical protein; hypothetical protein 347731 4689176 Pnap_0351 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980595.1 347159 R 365044 CDS YP_980596.1 121603267 4689461 complement(347808..349937) 1 NC_008781.1 PFAM: UvrD/REP helicase; KEGG: pol:Bpro_4281 UvrD/REP helicase; UvrD/REP helicase 349937 4689461 Pnap_0352 Polaromonas naphthalenivorans CJ2 UvrD/REP helicase YP_980596.1 347808 R 365044 CDS YP_980597.1 121603268 4689493 complement(350042..351274) 1 NC_008781.1 TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase 351274 4689493 Pnap_0353 Polaromonas naphthalenivorans CJ2 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase YP_980597.1 350042 R 365044 CDS YP_980598.1 121603269 4689506 complement(351271..353049) 1 NC_008781.1 putative bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia; putative bifunctional OHCU decarboxylase/allantoate amidohydrolase 353049 4689506 Pnap_0354 Polaromonas naphthalenivorans CJ2 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase YP_980598.1 351271 R 365044 CDS YP_980599.1 121603270 4689520 complement(353046..353999) 1 NC_008781.1 PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1424 polysaccharide deacetylase; polysaccharide deacetylase 353999 4689520 Pnap_0355 Polaromonas naphthalenivorans CJ2 polysaccharide deacetylase YP_980599.1 353046 R 365044 CDS YP_980600.1 121603271 4689616 354171..354527 1 NC_008781.1 PFAM: Transthyretin; KEGG: atc:AGR_C_4223 conserved hypothetical protein PA1518; transthyretin 354527 4689616 Pnap_0356 Polaromonas naphthalenivorans CJ2 transthyretin YP_980600.1 354171 D 365044 CDS YP_980601.1 121603272 4689579 354524..355741 1 NC_008781.1 PFAM: protein of unknown function DUF989; KEGG: pol:Bpro_1430 putative transmembrane protein; hypothetical protein 355741 4689579 Pnap_0357 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980601.1 354524 D 365044 CDS YP_980602.1 121603273 4689640 complement(355874..356878) 1 NC_008781.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bur:Bcep18194_A6396 AAA ATPase, central region; ATPase central domain-containing protein 356878 4689640 Pnap_0358 Polaromonas naphthalenivorans CJ2 ATPase central domain-containing protein YP_980602.1 355874 R 365044 CDS YP_980603.1 121603274 4689667 357176..359512 1 NC_008781.1 KEGG: pol:Bpro_4276 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 359512 4689667 Pnap_0359 Polaromonas naphthalenivorans CJ2 PAS/PAC sensor signal transduction histidine kinase YP_980603.1 357176 D 365044 CDS YP_980604.1 121603275 4690041 complement(359491..360561) 1 NC_008781.1 KEGG: pen:PSEEN4898 hypothetical protein; hypothetical protein 360561 4690041 Pnap_0360 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980604.1 359491 R 365044 CDS YP_980605.1 121603276 4690179 360685..361191 1 NC_008781.1 hypothetical protein 361191 4690179 Pnap_0361 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980605.1 360685 D 365044 CDS YP_980606.1 121603277 4690112 complement(361263..363392) 1 NC_008781.1 KEGG: pol:Bpro_4265 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; primosomal protein N' 363392 4690112 Pnap_0362 Polaromonas naphthalenivorans CJ2 primosomal protein N' YP_980606.1 361263 R 365044 CDS YP_980607.1 121603278 4690199 complement(363768..364877) 1 NC_008781.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 364877 hemE 4690199 hemE Polaromonas naphthalenivorans CJ2 uroporphyrinogen decarboxylase YP_980607.1 363768 R 365044 CDS YP_980608.1 121603279 4690205 364982..365347 1 NC_008781.1 KEGG: pol:Bpro_4263 hypothetical protein; hypothetical protein 365347 4690205 Pnap_0364 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980608.1 364982 D 365044 CDS YP_980609.1 121603280 4689809 complement(365438..365770) 1 NC_008781.1 hypothetical protein 365770 4689809 Pnap_0365 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980609.1 365438 R 365044 CDS YP_980610.1 121603281 4689941 complement(365781..366377) 1 NC_008781.1 hypothetical protein 366377 4689941 Pnap_0366 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980610.1 365781 R 365044 CDS YP_980611.1 121603282 4689965 complement(366415..366819) 1 NC_008781.1 PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 Roadblock/LC7; roadblock/LC7 family protein 366819 4689965 Pnap_0367 Polaromonas naphthalenivorans CJ2 roadblock/LC7 family protein YP_980611.1 366415 R 365044 CDS YP_980612.1 121603283 4689947 complement(366906..367313) 1 NC_008781.1 hypothetical protein 367313 4689947 Pnap_0368 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980612.1 366906 R 365044 CDS YP_980613.1 121603284 4689820 complement(367341..368777) 1 NC_008781.1 PFAM: Dual specificity protein phosphatase; ABC transporter related; SMART: AAA ATPase; protein tyrosine phosphatase, catalytic region; KEGG: sit:TM1040_3766 ABC transporter related; ABC transporter-like protein 368777 4689820 Pnap_0369 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980613.1 367341 R 365044 CDS YP_980614.1 121603285 4689742 complement(368774..369337) 1 NC_008781.1 PFAM: protein of unknown function, ATP binding; KEGG: noc:Noc_0133 conserved hypothetical ATP binding protein; hypothetical protein 369337 4689742 Pnap_0370 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980614.1 368774 R 365044 CDS YP_980615.1 121603286 4689723 complement(369366..369740) 1 NC_008781.1 hypothetical protein 369740 4689723 Pnap_0371 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980615.1 369366 R 365044 CDS YP_980616.1 121603287 4689699 complement(369880..371205) 1 NC_008781.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_4260 methyltransferase type 12; type 12 methyltransferase 371205 4689699 Pnap_0372 Polaromonas naphthalenivorans CJ2 type 12 methyltransferase YP_980616.1 369880 R 365044 CDS YP_980617.1 121603288 4689581 371606..372061 1 NC_008781.1 KEGG: sde:Sde_2347 hypothetical protein; hypothetical protein 372061 4689581 Pnap_0373 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980617.1 371606 D 365044 CDS YP_980618.1 121603289 4689618 complement(372171..372905) 1 NC_008781.1 KEGG: pol:Bpro_4259 putative lipoprotein; putative lipoprotein 372905 4689618 Pnap_0374 Polaromonas naphthalenivorans CJ2 putative lipoprotein YP_980618.1 372171 R 365044 CDS YP_980619.1 121603290 4689575 complement(372909..373373) 1 NC_008781.1 PFAM: CoA-binding domain protein; KEGG: pol:Bpro_4258 CoA-binding; CoA-binding domain-containing protein 373373 4689575 Pnap_0375 Polaromonas naphthalenivorans CJ2 CoA-binding domain-containing protein YP_980619.1 372909 R 365044 CDS YP_980620.1 121603291 4689566 complement(373443..375590) 1 NC_008781.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: pol:Bpro_4257 thiol-disulfide interchange protein DsbD-like; cytochrome c biogenesis protein transmembrane subunit 375590 4689566 Pnap_0376 Polaromonas naphthalenivorans CJ2 cytochrome c biogenesis protein transmembrane subunit YP_980620.1 373443 R 365044 CDS YP_980621.1 121603292 4689528 375774..376268 1 NC_008781.1 PFAM: helix-turn-helix domain protein; KEGG: plu:plu2740 hypothetical protein; XRE family transcriptional regulator 376268 4689528 Pnap_0377 Polaromonas naphthalenivorans CJ2 XRE family transcriptional regulator YP_980621.1 375774 D 365044 CDS YP_980622.1 121603293 4689503 376278..376976 1 NC_008781.1 KEGG: ret:RHE_CH01166 hypothetical protein; hypothetical protein 376976 4689503 Pnap_0378 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980622.1 376278 D 365044 CDS YP_980623.1 121603294 4689458 complement(377049..377372) 1 NC_008781.1 PFAM: protein of unknown function DUF167; KEGG: pol:Bpro_2664 protein of unknown function DUF167; hypothetical protein 377372 4689458 Pnap_0379 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980623.1 377049 R 365044 CDS YP_980624.1 121603295 4689440 377538..378107 1 NC_008781.1 PFAM: cytochrome B561; KEGG: rfr:Rfer_2432 cytochrome b561; cytochrome B561 378107 4689440 Pnap_0380 Polaromonas naphthalenivorans CJ2 cytochrome B561 YP_980624.1 377538 D 365044 CDS YP_980625.1 121603296 4689380 378109..378603 1 NC_008781.1 KEGG: gsu:GSU2680 hypothetical protein; hypothetical protein 378603 4689380 Pnap_0381 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980625.1 378109 D 365044 CDS YP_980626.1 121603297 4689415 378619..378939 1 NC_008781.1 KEGG: pol:Bpro_1262 hypothetical protein; hypothetical protein 378939 4689415 Pnap_0382 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980626.1 378619 D 365044 CDS YP_980627.1 121603298 4689771 complement(378995..379996) 1 NC_008781.1 KEGG: bbr:BB1683 phage-related hypothetical protein; hypothetical protein 379996 4689771 Pnap_0383 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980627.1 378995 R 365044 CDS YP_980628.1 121603299 4689843 complement(380445..382046) 1 NC_008781.1 KEGG: gsu:GSU0552 hypothetical protein; hypothetical protein 382046 4689843 Pnap_0384 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980628.1 380445 R 365044 CDS YP_980629.1 121603300 4689902 382417..382674 1 NC_008781.1 hypothetical protein 382674 4689902 Pnap_0385 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980629.1 382417 D 365044 CDS YP_980630.1 121603301 4689977 382949..383554 1 NC_008781.1 SMART: helix-turn-helix domain protein; KEGG: putative transcriptional regulator; helix-turn-helix domain-containing protein 383554 4689977 Pnap_0386 Polaromonas naphthalenivorans CJ2 helix-turn-helix domain-containing protein YP_980630.1 382949 D 365044 CDS YP_980631.1 121603302 4689852 383746..385404 1 NC_008781.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pol:Bpro_4256 radical SAM; radical SAM domain-containing protein 385404 4689852 Pnap_0387 Polaromonas naphthalenivorans CJ2 radical SAM domain-containing protein YP_980631.1 383746 D 365044 CDS YP_980632.1 121603303 4689914 385516..385935 1 NC_008781.1 KEGG: ilo:IL0085 uncharacterized conserved coiled coil protein; hypothetical protein 385935 4689914 Pnap_0388 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980632.1 385516 D 365044 CDS YP_980633.1 121603304 4689966 385951..387585 1 NC_008781.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: rfr:Rfer_3009 chaperonin GroEL; chaperonin GroEL 387585 4689966 Pnap_0389 Polaromonas naphthalenivorans CJ2 chaperonin GroEL YP_980633.1 385951 D 365044 CDS YP_980634.1 121603305 4689943 387609..388067 1 NC_008781.1 KEGG: rfr:Rfer_3010 hypothetical protein; hypothetical protein 388067 4689943 Pnap_0390 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980634.1 387609 D 365044 CDS YP_980635.1 121603306 4689833 388119..388547 1 NC_008781.1 PFAM: UspA domain protein; KEGG: rpa:RPA3434 universal stress protein (Usp); UspA domain-containing protein 388547 4689833 Pnap_0391 Polaromonas naphthalenivorans CJ2 UspA domain-containing protein YP_980635.1 388119 D 365044 CDS YP_980636.1 121603307 4689072 complement(388540..390396) 1 NC_008781.1 KEGG: pol:Bpro_0723 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 390396 4689072 Pnap_0392 Polaromonas naphthalenivorans CJ2 ATP-dependent metalloprotease FtsH YP_980636.1 388540 R 365044 CDS YP_980637.1 121603308 4689054 390553..390900 1 NC_008781.1 KEGG: bxe:Bxe_B0447 hypothetical protein; hypothetical protein 390900 4689054 Pnap_0393 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980637.1 390553 D 365044 CDS YP_980638.1 121603309 4688984 390986..391855 1 NC_008781.1 PFAM: Creatininase; KEGG: pol:Bpro_4255 creatininase; creatininase 391855 4688984 Pnap_0394 Polaromonas naphthalenivorans CJ2 creatininase YP_980638.1 390986 D 365044 CDS YP_980639.1 121603310 4689013 392221..393561 1 NC_008781.1 KEGG: pfo:Pfl_1639 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 393561 4689013 Pnap_0395 Polaromonas naphthalenivorans CJ2 L-sorbosone dehydrogenase YP_980639.1 392221 D 365044 CDS YP_980640.1 121603311 4687030 complement(393640..394308) 1 NC_008781.1 PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_4246 phosphoglycerate mutase; phosphoglycerate mutase 394308 4687030 Pnap_0396 Polaromonas naphthalenivorans CJ2 phosphoglycerate mutase YP_980640.1 393640 R 365044 CDS YP_980641.1 121603312 4687062 complement(394345..396612) 1 NC_008781.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ade:Adeh_2956 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 396612 4687062 Pnap_0397 Polaromonas naphthalenivorans CJ2 integral membrane sensor hybrid histidine kinase YP_980641.1 394345 R 365044 CDS YP_980642.1 121603313 4686984 complement(396843..397241) 1 NC_008781.1 PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like); response regulator receiver protein 397241 4686984 Pnap_0398 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_980642.1 396843 R 365044 CDS YP_980643.1 121603314 4686995 complement(397480..398220) 1 NC_008781.1 hypothetical protein 398220 4686995 Pnap_0399 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980643.1 397480 R 365044 CDS YP_980644.1 121603315 4686316 complement(398447..399379) 1 NC_008781.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pol:Bpro_4242 phenazine biosynthesis PhzC/PhzF protein; PhzF family phenazine biosynthesis protein 399379 4686316 Pnap_0400 Polaromonas naphthalenivorans CJ2 PhzF family phenazine biosynthesis protein YP_980644.1 398447 R 365044 CDS YP_980645.1 121603316 4686411 complement(399420..400640) 1 NC_008781.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_4240 aminotransferase, class I and II; GntR family transcriptional regulator 400640 4686411 Pnap_0401 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_980645.1 399420 R 365044 CDS YP_980646.1 121603317 4686440 complement(400694..401629) 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_4235 protein of unknown function DUF6, transmembrane; hypothetical protein 401629 4686440 Pnap_0402 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980646.1 400694 R 365044 CDS YP_980647.1 121603318 4686473 401856..403277 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: pol:Bpro_4233 transcriptional regulator, GntR family; GntR family transcriptional regulator 403277 4686473 Pnap_0403 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_980647.1 401856 D 365044 CDS YP_980648.1 121603319 4686507 403967..404509 1 NC_008781.1 TIGRFAM: conserved repeat domain; KEGG: pcr:Pcryo_1048 hypothetical protein; hypothetical protein 404509 4686507 Pnap_0404 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980648.1 403967 D 365044 CDS YP_980649.1 121603320 4686538 404675..407608 1 NC_008781.1 TIGRFAM: conserved repeat domain; KEGG: sme:SMc01711 hypothetical protein; hypothetical protein 407608 4686538 Pnap_0405 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980649.1 404675 D 365044 CDS YP_980650.1 121603321 4686545 407611..414867 1 NC_008781.1 TIGRFAM: conserved repeat domain; KEGG: pcr:Pcryo_1046 protein of unknown function DUF11; hypothetical protein 414867 4686545 Pnap_0406 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980650.1 407611 D 365044 CDS YP_980651.1 121603322 4686693 415038..418895 1 NC_008781.1 TIGRFAM: conserved repeat domain; KEGG: mmu:239611 mucin 19; hypothetical protein 418895 4686693 Pnap_0407 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980651.1 415038 D 365044 CDS YP_980652.1 121603323 4686714 complement(419056..419238) 1 NC_008781.1 hypothetical protein 419238 4686714 Pnap_0408 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980652.1 419056 R 365044 CDS YP_980653.1 121603324 4686727 complement(419263..419430) 1 NC_008781.1 KEGG: reu:Reut_C5975 transposase, IS4; transposase, IS4 419430 4686727 Pnap_0409 Polaromonas naphthalenivorans CJ2 transposase, IS4 YP_980653.1 419263 R 365044 CDS YP_980654.1 121603325 4686733 complement(419901..420377) 1 NC_008781.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 420377 4686733 Pnap_0410 Polaromonas naphthalenivorans CJ2 putative transposase of insertion sequence ISRm10-1 YP_980654.1 419901 R 365044 CDS YP_980655.1 121603326 4686751 complement(420397..420855) 1 NC_008781.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein 420855 4686751 Pnap_0411 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980655.1 420397 R 365044 CDS YP_980656.1 121603327 4686756 complement(421048..422730) 1 NC_008781.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_4230 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 422730 4686756 Pnap_0412 Polaromonas naphthalenivorans CJ2 phospholipase D/transphosphatidylase YP_980656.1 421048 R 365044 CDS YP_980657.1 121603328 4686795 complement(422891..424816) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4229 ABC transporter related; ABC transporter-like protein 424816 4686795 Pnap_0413 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980657.1 422891 R 365044 CDS YP_980658.1 121603329 4689736 431209..431571 1 NC_008781.1 hypothetical protein 431571 4689736 Pnap_0414 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980658.1 431209 D 365044 CDS YP_980659.1 121603330 4686282 431574..433643 1 NC_008781.1 PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; Recombinase; KEGG: ret:RHE_PA00038 probable insertion sequence transposase protein; recombinase 433643 4686282 Pnap_0415 Polaromonas naphthalenivorans CJ2 recombinase YP_980659.1 431574 D 365044 CDS YP_980660.1 121603331 4687646 complement(433656..434240) 1 NC_008781.1 KEGG: rfr:Rfer_2711 transposase IS66; transposase IS66 434240 4687646 Pnap_0416 Polaromonas naphthalenivorans CJ2 transposase IS66 YP_980660.1 433656 R 365044 CDS YP_980661.1 121603332 4689531 complement(434614..435651) 1 NC_008781.1 KEGG: xom:XOO_3993 ISXo7 transposase; ISXo7 transposase 435651 4689531 Pnap_0418 Polaromonas naphthalenivorans CJ2 ISXo7 transposase YP_980661.1 434614 R 365044 CDS YP_980662.1 121603333 4687660 complement(435689..436183) 1 NC_008781.1 KEGG: eba:ebA6355 transposase, IS4 family; IS4 family transposase 436183 4687660 Pnap_0419 Polaromonas naphthalenivorans CJ2 IS4 family transposase YP_980662.1 435689 R 365044 CDS YP_980663.1 121603334 4687654 complement(436531..437613) 1 NC_008781.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase; transposase IS116/IS110/IS902 family protein 437613 4687654 Pnap_0420 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_980663.1 436531 R 365044 CDS YP_980664.1 121603335 4687271 complement(437610..438173) 1 NC_008781.1 KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 438173 4687271 Pnap_0421 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980664.1 437610 R 365044 CDS YP_980665.1 121603336 4687280 complement(438226..439050) 1 NC_008781.1 PFAM: transposase IS66; KEGG: bxe:Bxe_B1865 transposase IS66 family; transposase IS66 439050 4687280 Pnap_0422 Polaromonas naphthalenivorans CJ2 transposase IS66 YP_980665.1 438226 R 365044 CDS YP_980666.1 121603337 4687148 complement(439115..439402) 1 NC_008781.1 PFAM: IS66 Orf2 family protein; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein 439402 4687148 Pnap_0423 Polaromonas naphthalenivorans CJ2 IS66 Orf2 family protein YP_980666.1 439115 R 365044 CDS YP_980667.1 121603338 4687054 complement(439444..439854) 1 NC_008781.1 PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein 439854 4687054 Pnap_0424 Polaromonas naphthalenivorans CJ2 transposase IS3/IS911 family protein YP_980667.1 439444 R 365044 CDS YP_980668.1 121603339 4687311 complement(439931..441178) 1 NC_008781.1 PFAM: transposase, IS4 family protein; KEGG: bxe:Bxe_C0019 putative transposase; transposase, IS4 family protein 441178 4687311 Pnap_0425 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_980668.1 439931 R 365044 CDS YP_980669.1 121603340 4686874 441484..442551 1 NC_008781.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 442551 4686874 Pnap_0426 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_980669.1 441484 D 365044 CDS YP_980670.1 121603341 4687379 442923..443963 1 NC_008781.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bxe:Bxe_C0485 putative transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 443963 4687379 Pnap_0427 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_980670.1 442923 D 365044 CDS YP_980671.1 121603342 4687205 444129..444617 1 NC_008781.1 KEGG: nha:Nham_3929 putative transposase; hypothetical protein 444617 4687205 Pnap_0428 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980671.1 444129 D 365044 CDS YP_980672.1 121603343 4687464 complement(444542..445519) 1 NC_008781.1 PFAM: Integrase, catalytic region; KEGG: gox:GOX2195 transposase (class III); integrase catalytic subunit 445519 4687464 Pnap_0429 Polaromonas naphthalenivorans CJ2 integrase catalytic subunit YP_980672.1 444542 R 365044 CDS YP_980673.1 121603344 4687403 complement(445572..445871) 1 NC_008781.1 PFAM: transposase IS3/IS911 family protein; KEGG: sat:SYN_03173 transposase; transposase IS3/IS911 family protein 445871 4687403 Pnap_0430 Polaromonas naphthalenivorans CJ2 transposase IS3/IS911 family protein YP_980673.1 445572 R 365044 CDS YP_980674.1 121603345 4687471 complement(446057..446986) 1 NC_008781.1 PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4226 beta-lactamase-like; beta-lactamase domain-containing protein 446986 4687471 Pnap_0431 Polaromonas naphthalenivorans CJ2 beta-lactamase domain-containing protein YP_980674.1 446057 R 365044 CDS YP_980675.1 121603346 4687565 complement(446986..447756) 1 NC_008781.1 KEGG: pol:Bpro_4224 hypothetical protein; hypothetical protein 447756 4687565 Pnap_0432 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980675.1 446986 R 365044 CDS YP_980676.1 121603347 4687704 447789..448346 1 NC_008781.1 KEGG: pol:Bpro_4223 hypothetical protein; hypothetical protein 448346 4687704 Pnap_0433 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980676.1 447789 D 365044 CDS YP_980677.1 121603348 4687603 448360..449985 1 NC_008781.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: pol:Bpro_4222 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 449985 4687603 Pnap_0434 Polaromonas naphthalenivorans CJ2 glucose-methanol-choline oxidoreductase YP_980677.1 448360 D 365044 CDS YP_980678.1 121603349 4687623 450012..450920 1 NC_008781.1 KEGG: pol:Bpro_4221 putative lipase transmembrane protein; putative lipase transmembrane protein 450920 4687623 Pnap_0435 Polaromonas naphthalenivorans CJ2 putative lipase transmembrane protein YP_980678.1 450012 D 365044 CDS YP_980679.1 121603350 4687684 451228..452340 1 NC_008781.1 PFAM: response regulator receiver; KEGG: dra:DR2556 response regulator; response regulator receiver protein 452340 4687684 Pnap_0436 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_980679.1 451228 D 365044 CDS YP_980680.1 121603351 4687679 452337..455729 1 NC_008781.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; multi-sensor hybrid histidine kinase 455729 4687679 Pnap_0437 Polaromonas naphthalenivorans CJ2 multi-sensor hybrid histidine kinase YP_980680.1 452337 D 365044 CDS YP_980681.1 121603352 4688398 455888..456715 1 NC_008781.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 456715 4688398 Pnap_0438 Polaromonas naphthalenivorans CJ2 N-acetyltransferase GCN5 YP_980681.1 455888 D 365044 CDS YP_980682.1 121603353 4688503 456915..457784 1 NC_008781.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: pol:Bpro_4209 CBS domain; hypothetical protein 457784 4688503 Pnap_0439 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980682.1 456915 D 365044 CDS YP_980683.1 121603354 4688336 457921..459471 1 NC_008781.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_4208 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 459471 4688336 Pnap_0440 Polaromonas naphthalenivorans CJ2 apolipoprotein N-acyltransferase YP_980683.1 457921 D 365044 CDS YP_980684.1 121603355 4687998 complement(459474..460394) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4207 transcriptional regulator, LysR family; LysR family transcriptional regulator 460394 4687998 Pnap_0441 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_980684.1 459474 R 365044 CDS YP_980685.1 121603356 4687978 460542..461681 1 NC_008781.1 KEGG: pol:Bpro_4206 L-asparaginases, type II; TIGRFAM: L-asparaginases, type II; PFAM: Asparaginase/glutaminase; L-asparaginase 461681 4687978 Pnap_0442 Polaromonas naphthalenivorans CJ2 L-asparaginase YP_980685.1 460542 D 365044 CDS YP_980686.1 121603357 4687723 461823..462749 1 NC_008781.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 462749 glyQ 4687723 glyQ Polaromonas naphthalenivorans CJ2 glycyl-tRNA synthetase subunit alpha YP_980686.1 461823 D 365044 CDS YP_980687.1 121603358 4688195 462753..464888 1 NC_008781.1 KEGG: rfr:Rfer_3695 glycine--tRNA ligase; glycine--tRNA ligase 464888 4688195 Pnap_0444 Polaromonas naphthalenivorans CJ2 glycine--tRNA ligase YP_980687.1 462753 D 365044 CDS YP_980688.1 121603359 4688244 464914..465564 1 NC_008781.1 hypothetical protein 465564 4688244 Pnap_0445 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980688.1 464914 D 365044 CDS YP_980689.1 121603360 4688245 465564..466148 1 NC_008781.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pol:Bpro_4201 histidinol-phosphate phosphatase; histidinol-phosphate phosphatase family protein 466148 4688245 Pnap_0446 Polaromonas naphthalenivorans CJ2 histidinol-phosphate phosphatase family protein YP_980689.1 465564 D 365044 CDS YP_980690.1 121603361 4688260 466315..467082 1 NC_008781.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_4200 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 467082 4688260 Pnap_0447 Polaromonas naphthalenivorans CJ2 phospholipid/glycerol acyltransferase YP_980690.1 466315 D 365044 CDS YP_980691.1 121603362 4687919 467090..468049 1 NC_008781.1 PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_4199 protein of unknown function DUF45; hypothetical protein 468049 4687919 Pnap_0448 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980691.1 467090 D 365044 CDS YP_980692.1 121603363 4688277 468166..468606 1 NC_008781.1 PFAM: response regulator receiver; KEGG: pol:Bpro_4198 response regulator receiver domain protein (CheY-like); response regulator receiver protein 468606 4688277 Pnap_0449 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_980692.1 468166 D 365044 CDS YP_980693.1 121603364 4688407 468674..472207 1 NC_008781.1 KEGG: pol:Bpro_4197 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 472207 4688407 Pnap_0450 Polaromonas naphthalenivorans CJ2 multi-sensor signal transduction histidine kinase YP_980693.1 468674 D 365044 CDS YP_980694.1 121603365 4688417 472320..472961 1 NC_008781.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: response regulator receiver; KEGG: pol:Bpro_4196 response regulator receiver domain protein (CheY-like); response regulator receiver protein 472961 4688417 Pnap_0451 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_980694.1 472320 D 365044 CDS YP_980695.1 121603366 4688439 472986..474545 1 NC_008781.1 KEGG: pol:Bpro_4195 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 474545 4688439 Pnap_0452 Polaromonas naphthalenivorans CJ2 PAS/PAC sensor signal transduction histidine kinase YP_980695.1 472986 D 365044 CDS YP_980696.1 121603367 4689099 474767..475162 1 NC_008781.1 PFAM: regulatory protein, MerR; KEGG: pol:Bpro_4192 transcriptional regulator, MerR family; MerR family transcriptional regulator 475162 4689099 Pnap_0453 Polaromonas naphthalenivorans CJ2 MerR family transcriptional regulator YP_980696.1 474767 D 365044 CDS YP_980697.1 121603368 4688583 475243..475686 1 NC_008781.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_4191 phenylacetic acid degradation-related protein; hypothetical protein 475686 4688583 Pnap_0454 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980697.1 475243 D 365044 CDS YP_980698.1 121603369 4688759 475729..476910 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_4190 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 476910 4688759 Pnap_0455 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_980698.1 475729 D 365044 CDS YP_980699.1 121603370 4688390 476964..477623 1 NC_008781.1 PFAM: carbonic anhydrase; KEGG: pol:Bpro_4189 carbonate dehydratase; carbonate dehydratase 477623 4688390 Pnap_0456 Polaromonas naphthalenivorans CJ2 carbonate dehydratase YP_980699.1 476964 D 365044 CDS YP_980700.1 121603371 4688787 477701..479572 1 NC_008781.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 479572 aceK 4688787 aceK Polaromonas naphthalenivorans CJ2 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_980700.1 477701 D 365044 CDS YP_980701.1 121603372 4688380 479647..480828 1 NC_008781.1 KEGG: pol:Bpro_4187 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 480828 4688380 Pnap_0458 Polaromonas naphthalenivorans CJ2 acetyl-CoA acetyltransferase YP_980701.1 479647 D 365044 CDS YP_980702.1 121603373 4688899 480874..482004 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_4185 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 482004 4688899 Pnap_0459 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_980702.1 480874 D 365044 CDS YP_980703.1 121603374 4688951 482039..482455 1 NC_008781.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_4183 rhodanese-like; rhodanese domain-containing protein 482455 4688951 Pnap_0460 Polaromonas naphthalenivorans CJ2 rhodanese domain-containing protein YP_980703.1 482039 D 365044 CDS YP_980704.1 121603375 4687045 482671..483831 1 NC_008781.1 KEGG: pol:Bpro_4174 aminotransferase, class V; class V aminotransferase 483831 4687045 Pnap_0461 Polaromonas naphthalenivorans CJ2 class V aminotransferase YP_980704.1 482671 D 365044 CDS YP_980705.1 121603376 4686065 complement(483853..484824) 1 NC_008781.1 hypothetical protein 484824 4686065 Pnap_0462 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980705.1 483853 R 365044 CDS YP_980706.1 121603377 4689518 485047..485313 1 NC_008781.1 KEGG: pol:Bpro_4174 aminotransferase, class V; class V aminotransferase 485313 4689518 Pnap_0463 Polaromonas naphthalenivorans CJ2 class V aminotransferase YP_980706.1 485047 D 365044 CDS YP_980707.1 121603378 4687187 complement(485332..485946) 1 NC_008781.1 PFAM: protein of unknown function DUF1326; KEGG: mlo:mll4476 hypothetical protein; hypothetical protein 485946 4687187 Pnap_0464 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980707.1 485332 R 365044 CDS YP_980708.1 121603379 4688014 486200..486994 1 NC_008781.1 KEGG: pol:Bpro_1844 hypothetical protein; hypothetical protein 486994 4688014 Pnap_0465 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980708.1 486200 D 365044 CDS YP_980709.1 121603380 4689950 487094..487504 1 NC_008781.1 KEGG: pol:Bpro_4182 hypothetical protein; hypothetical protein 487504 4689950 Pnap_0466 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980709.1 487094 D 365044 CDS YP_980710.1 121603381 4686109 487567..488226 1 NC_008781.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD-superfamily hydrolase, subfamily IA, variant3; HAD family hydrolase 488226 4686109 Pnap_0467 Polaromonas naphthalenivorans CJ2 HAD family hydrolase YP_980710.1 487567 D 365044 CDS YP_980711.1 121603382 4688623 complement(488415..488861) 1 NC_008781.1 PFAM: Ion transport 2 domain protein,; KEGG: nha:Nham_1961 ion transport 2; Ion transport 2 domain-containing protein 488861 4688623 Pnap_0468 Polaromonas naphthalenivorans CJ2 Ion transport 2 domain-containing protein YP_980711.1 488415 R 365044 CDS YP_980712.1 121603383 4687068 complement(488880..489941) 1 NC_008781.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_3834 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 489941 4687068 Pnap_0469 Polaromonas naphthalenivorans CJ2 helix-turn-helix domain-containing protein YP_980712.1 488880 R 365044 CDS YP_980713.1 121603384 4689870 490052..491791 1 NC_008781.1 activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein 491791 4689870 Pnap_0470 Polaromonas naphthalenivorans CJ2 AMP-binding domain-containing protein YP_980713.1 490052 D 365044 CDS YP_980714.1 121603385 4690188 491808..493415 1 NC_008781.1 PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase; propionyl-CoA carboxylase 493415 4690188 Pnap_0471 Polaromonas naphthalenivorans CJ2 propionyl-CoA carboxylase YP_980714.1 491808 D 365044 CDS YP_980715.1 121603386 4689998 493424..493945 1 NC_008781.1 PFAM: DinB family protein; KEGG: sme:SMc00593 hypothetical protein; DinB family protein 493945 4689998 Pnap_0472 Polaromonas naphthalenivorans CJ2 DinB family protein YP_980715.1 493424 D 365044 CDS YP_980716.1 121603387 4687159 493942..494724 1 NC_008781.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 494724 4687159 Pnap_0473 Polaromonas naphthalenivorans CJ2 enoyl-CoA hydratase YP_980716.1 493942 D 365044 CDS YP_980717.1 121603388 4686268 494747..495418 1 NC_008781.1 KEGG: pol:Bpro_4158 putative transmembrane protein; hypothetical protein 495418 4686268 Pnap_0474 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980717.1 494747 D 365044 CDS YP_980718.1 121603389 4687531 495411..497423 1 NC_008781.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_4157 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase subunit L 497423 4687531 Pnap_0475 Polaromonas naphthalenivorans CJ2 carbamoyl-phosphate synthase subunit L YP_980718.1 495411 D 365044 CDS YP_980719.1 121603390 4689383 497441..498370 1 NC_008781.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_4156 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 498370 4689383 Pnap_0476 Polaromonas naphthalenivorans CJ2 D-isomer specific 2-hydroxyacid dehydrogenase YP_980719.1 497441 D 365044 CDS YP_980720.1 121603391 4686193 498375..499301 1 NC_008781.1 PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4155 pyruvate carboxyltransferase; pyruvate carboxyltransferase 499301 4686193 Pnap_0477 Polaromonas naphthalenivorans CJ2 pyruvate carboxyltransferase YP_980720.1 498375 D 365044 CDS YP_980721.1 121603392 4687584 499301..500053 1 NC_008781.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; protein of unknown function DUF1289; KEGG: pol:Bpro_4154 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 500053 4687584 Pnap_0478 Polaromonas naphthalenivorans CJ2 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_980721.1 499301 D 365044 CDS YP_980722.1 121603393 4688115 500050..500739 1 NC_008781.1 PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_4153 DsbA oxidoreductase; DSBA oxidoreductase 500739 4688115 Pnap_0479 Polaromonas naphthalenivorans CJ2 DSBA oxidoreductase YP_980722.1 500050 D 365044 CDS YP_980723.1 121603394 4688903 500800..502626 1 NC_008781.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: cvi:CV2945 CBS domain-containing protein; cyclic nucleotide-binding protein 502626 4688903 Pnap_0480 Polaromonas naphthalenivorans CJ2 cyclic nucleotide-binding protein YP_980723.1 500800 D 365044 CDS YP_980724.1 121603395 4687574 502623..503285 1 NC_008781.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 503285 4687574 Pnap_0481 Polaromonas naphthalenivorans CJ2 DNA polymerase III subunit epsilon YP_980724.1 502623 D 365044 CDS YP_980725.1 121603396 4689185 503441..503794 1 NC_008781.1 PFAM: transport-associated; transporter 503794 4689185 Pnap_0482 Polaromonas naphthalenivorans CJ2 transporter YP_980725.1 503441 D 365044 CDS YP_980726.1 121603397 4689367 complement(505881..506234) 1 NC_008781.1 PFAM: protein of unknown function DUF485; KEGG: xoo:XOO4547 hypothetical protein; hypothetical protein 506234 4689367 Pnap_0484 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980726.1 505881 R 365044 CDS YP_980727.1 121603398 4689062 506556..508214 1 NC_008781.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pol:Bpro_4142 general substrate transporter; major facilitator superfamily transporter 508214 4689062 Pnap_0485 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_980727.1 506556 D 365044 CDS YP_980728.1 121603399 4689253 508230..508733 1 NC_008781.1 KEGG: pol:Bpro_4141 hypothetical protein; hypothetical protein 508733 4689253 Pnap_0486 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980728.1 508230 D 365044 CDS YP_980729.1 121603400 4687769 complement(508744..509847) 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor; extracellular ligand-binding receptor 509847 4687769 Pnap_0487 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_980729.1 508744 R 365044 CDS YP_980730.1 121603401 4687721 510042..515939 1 NC_008781.1 KEGG: pol:Bpro_4139 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; excinuclease ABC subunit A 515939 4687721 Pnap_0488 Polaromonas naphthalenivorans CJ2 excinuclease ABC subunit A YP_980730.1 510042 D 365044 CDS YP_980731.1 121603402 4688680 516348..517784 1 NC_008781.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 517784 4688680 Pnap_0489 Polaromonas naphthalenivorans CJ2 S-adenosyl-L-homocysteine hydrolase YP_980731.1 516348 D 365044 CDS YP_980732.1 121603403 4686884 517927..519003 1 NC_008781.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_4131 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 519003 4686884 Pnap_0490 Polaromonas naphthalenivorans CJ2 ribosomal RNA methyltransferase RrmJ/FtsJ YP_980732.1 517927 D 365044 CDS YP_980733.1 121603404 4689819 519013..519843 1 NC_008781.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: pol:Bpro_4130 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 519843 4689819 Pnap_0491 Polaromonas naphthalenivorans CJ2 5,10-methylenetetrahydrofolate reductase YP_980733.1 519013 D 365044 CDS YP_980734.1 121603405 4688498 519843..520559 1 NC_008781.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pol:Bpro_4129 rare lipoprotein A; rare lipoprotein A 520559 4688498 Pnap_0492 Polaromonas naphthalenivorans CJ2 rare lipoprotein A YP_980734.1 519843 D 365044 CDS YP_980735.1 121603406 4686834 520730..521353 1 NC_008781.1 KEGG: pol:Bpro_4118 hypothetical protein; hypothetical protein 521353 4686834 Pnap_0493 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980735.1 520730 D 365044 CDS YP_980736.1 121603407 4689098 521356..522768 1 NC_008781.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: pol:Bpro_4117 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 522768 4689098 Pnap_0494 Polaromonas naphthalenivorans CJ2 cytochrome bd ubiquinol oxidase subunit I YP_980736.1 521356 D 365044 CDS YP_980737.1 121603408 4688597 522761..523792 1 NC_008781.1 PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: pol:Bpro_4116 cytochrome bd ubiquinol oxidase, subunit II; cytochrome bd ubiquinol oxidase subunit II 523792 4688597 Pnap_0495 Polaromonas naphthalenivorans CJ2 cytochrome bd ubiquinol oxidase subunit II YP_980737.1 522761 D 365044 CDS YP_980738.1 121603409 4689347 complement(523803..524825) 1 NC_008781.1 PFAM: protein of unknown function DUF519; KEGG: pol:Bpro_4114 protein of unknown function DUF519; hypothetical protein 524825 4689347 Pnap_0496 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980738.1 523803 R 365044 CDS YP_980739.1 121603410 4687900 complement(524874..526469) 1 NC_008781.1 PFAM: magnesium chelatase, ChlI subunit; sigma-54 factor, interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1470 regulator of RNA terminal phosphate cyclase; regulator of RNA terminal phosphate cyclase 526469 4687900 Pnap_0497 Polaromonas naphthalenivorans CJ2 regulator of RNA terminal phosphate cyclase YP_980739.1 524874 R 365044 CDS YP_980740.1 121603411 4689392 526614..527906 1 NC_008781.1 PFAM: protein of unknown function UPF0027; KEGG: pol:Bpro_1473 protein of unknown function UPF0027; hypothetical protein 527906 4689392 Pnap_0498 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980740.1 526614 D 365044 CDS YP_980741.1 121603412 4689455 527926..529023 1 NC_008781.1 PFAM: RNA 3'-terminal phosphate cyclase; KEGG: pol:Bpro_1474 RNA-3'-phosphate cyclase; RNA-3'-phosphate cyclase 529023 4689455 Pnap_0499 Polaromonas naphthalenivorans CJ2 RNA-3'-phosphate cyclase YP_980741.1 527926 D 365044 CDS YP_980742.1 121603413 4689741 529265..529708 1 NC_008781.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 529708 rplM 4689741 rplM Polaromonas naphthalenivorans CJ2 50S ribosomal protein L13 YP_980742.1 529265 D 365044 CDS YP_980743.1 121603414 4689076 529705..530097 1 NC_008781.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 530097 rpsI 4689076 rpsI Polaromonas naphthalenivorans CJ2 30S ribosomal protein S9 YP_980743.1 529705 D 365044 CDS YP_980744.1 121603415 4687534 530261..530626 1 NC_008781.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 530626 4687534 Pnap_0502 Polaromonas naphthalenivorans CJ2 iron-sulfur cluster insertion protein ErpA YP_980744.1 530261 D 365044 CDS YP_980745.1 121603416 4686406 530809..533061 1 NC_008781.1 SMART: helicase c2; KEGG: rfr:Rfer_2033 helicase C2; helicase c2 533061 4686406 Pnap_0503 Polaromonas naphthalenivorans CJ2 helicase c2 YP_980745.1 530809 D 365044 CDS YP_980746.1 121603417 4686115 complement(533105..534244) 1 NC_008781.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 534244 anmK 4686115 anmK Polaromonas naphthalenivorans CJ2 anhydro-N-acetylmuramic acid kinase YP_980746.1 533105 R 365044 CDS YP_980747.1 121603418 4686310 complement(534281..535678) 1 NC_008781.1 PFAM: peptidase M23B; KEGG: pol:Bpro_4107 peptidase M23B; peptidase M23B 535678 4686310 Pnap_0505 Polaromonas naphthalenivorans CJ2 peptidase M23B YP_980747.1 534281 R 365044 CDS YP_980748.1 121603419 4687001 535905..537137 1 NC_008781.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 537137 4687001 Pnap_0506 Polaromonas naphthalenivorans CJ2 tyrosyl-tRNA synthetase YP_980748.1 535905 D 365044 CDS YP_980749.1 121603420 4686334 537151..537615 1 NC_008781.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 537615 4686334 Pnap_0507 Polaromonas naphthalenivorans CJ2 D-tyrosyl-tRNA(Tyr) deacylase YP_980749.1 537151 D 365044 CDS YP_980750.1 121603421 4687006 complement(537696..538151) 1 NC_008781.1 PFAM: protein of unknown function UPF0054; KEGG: rfr:Rfer_0737 protein of unknown function UPF0054; hypothetical protein 538151 4687006 Pnap_0508 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980750.1 537696 R 365044 CDS YP_980751.1 121603422 4687605 complement(538141..539178) 1 NC_008781.1 PFAM: PhoH family protein; KEGG: pol:Bpro_4095 PhoH-like protein; PhoH family protein 539178 4687605 Pnap_0509 Polaromonas naphthalenivorans CJ2 PhoH family protein YP_980751.1 538141 R 365044 CDS YP_980752.1 121603423 4687918 539239..539817 1 NC_008781.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 539817 ruvA 4687918 ruvA Polaromonas naphthalenivorans CJ2 Holliday junction DNA helicase RuvA YP_980752.1 539239 D 365044 CDS YP_980753.1 121603424 4687662 539830..540756 1 NC_008781.1 PFAM: protein of unknown function DUF511; KEGG: cte:CT1399 hypothetical protein; hypothetical protein 540756 4687662 Pnap_0511 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980753.1 539830 D 365044 CDS YP_980754.1 121603425 4688470 540753..541823 1 NC_008781.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 541823 ruvB 4688470 ruvB Polaromonas naphthalenivorans CJ2 Holliday junction DNA helicase RuvB YP_980754.1 540753 D 365044 CDS YP_980755.1 121603426 4688509 complement(542006..543196) 1 NC_008781.1 KEGG: pol:Bpro_4092 putative threonine aldolase; putative threonine aldolase 543196 4688509 Pnap_0513 Polaromonas naphthalenivorans CJ2 putative threonine aldolase YP_980755.1 542006 R 365044 CDS YP_980756.1 121603427 4688957 complement(543224..543898) 1 NC_008781.1 PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_4091 phosphoglycerate mutase; phosphoglycerate mutase 543898 4688957 Pnap_0514 Polaromonas naphthalenivorans CJ2 phosphoglycerate mutase YP_980756.1 543224 R 365044 CDS YP_980757.1 121603428 4689958 complement(543948..544574) 1 NC_008781.1 KEGG: pol:Bpro_4090 hypothetical protein; hypothetical protein 544574 4689958 Pnap_0515 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980757.1 543948 R 365044 CDS YP_980758.1 121603429 4689812 complement(544596..545540) 1 NC_008781.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 545540 4689812 Pnap_0516 Polaromonas naphthalenivorans CJ2 C32 tRNA thiolase YP_980758.1 544596 R 365044 CDS YP_980759.1 121603430 4689423 complement(545546..545998) 1 NC_008781.1 KEGG: pol:Bpro_4088 dihydroneopterin aldolase; dihydroneopterin aldolase 545998 4689423 Pnap_0517 Polaromonas naphthalenivorans CJ2 dihydroneopterin aldolase YP_980759.1 545546 R 365044 CDS YP_980760.1 121603431 4689484 complement(545995..546762) 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_4087 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 546762 4689484 Pnap_0518 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_980760.1 545995 R 365044 CDS YP_980761.1 121603432 4688654 546835..547941 1 NC_008781.1 PFAM: protein of unknown function DUF185; KEGG: pol:Bpro_4086 protein of unknown function DUF185; hypothetical protein 547941 4688654 Pnap_0519 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980761.1 546835 D 365044 CDS YP_980762.1 121603433 4687802 548057..548335 1 NC_008781.1 KEGG: pol:Bpro_0616 transcriptional regulator, XRE family; hypothetical protein 548335 4687802 Pnap_0520 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980762.1 548057 D 365044 CDS YP_980763.1 121603434 4688021 548332..549600 1 NC_008781.1 PFAM: HipA domain protein; KEGG: pol:Bpro_0617 HipA-like; HipA domain-containing protein 549600 4688021 Pnap_0521 Polaromonas naphthalenivorans CJ2 HipA domain-containing protein YP_980763.1 548332 D 365044 CDS YP_980764.1 121603435 4688709 549611..549805 1 NC_008781.1 KEGG: pol:Bpro_4085 hypothetical protein; hypothetical protein 549805 4688709 Pnap_0522 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980764.1 549611 D 365044 CDS YP_980765.1 121603436 4689096 549995..551251 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_1097 extracellular solute-binding protein, family 1; extracellular solute-binding protein 551251 4689096 Pnap_0523 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_980765.1 549995 D 365044 CDS YP_980766.1 121603437 4690126 complement(551295..552680) 1 NC_008781.1 KEGG: pol:Bpro_3918 alpha,alpha-trehalose-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase, family 20; alpha,alpha-trehalose-phosphate synthase 552680 4690126 Pnap_0524 Polaromonas naphthalenivorans CJ2 alpha,alpha-trehalose-phosphate synthase YP_980766.1 551295 R 365044 CDS YP_980767.1 121603438 4689685 complement(552677..554497) 1 NC_008781.1 PFAM: glycoside hydrolase 15-related; KEGG: pol:Bpro_3916 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 554497 4689685 Pnap_0525 Polaromonas naphthalenivorans CJ2 glycoside hydrolase 15-like protein YP_980767.1 552677 R 365044 CDS YP_980768.1 121603439 4687743 complement(554494..555273) 1 NC_008781.1 KEGG: pol:Bpro_3915 HAD-superfamily hydrolase subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD family hydrolase 555273 4687743 Pnap_0526 Polaromonas naphthalenivorans CJ2 HAD family hydrolase YP_980768.1 554494 R 365044 CDS YP_980769.1 121603440 4687508 complement(555398..557479) 1 NC_008781.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0652 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 557479 4687508 Pnap_0527 Polaromonas naphthalenivorans CJ2 lytic transglycosylase catalytic subunit YP_980769.1 555398 R 365044 CDS YP_980770.1 121603441 4686745 557489..558127 1 NC_008781.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: pol:Bpro_0653 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 558127 4686745 Pnap_0528 Polaromonas naphthalenivorans CJ2 5-formyltetrahydrofolate cyclo-ligase YP_980770.1 557489 D 365044 CDS YP_980771.1 121603442 4687480 complement(558214..559257) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1086 transcriptional regulator, LysR family; LysR family transcriptional regulator 559257 4687480 Pnap_0529 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_980771.1 558214 R 365044 CDS YP_980772.1 121603443 4687059 559331..559792 1 NC_008781.1 KEGG: rfr:Rfer_1085 hypothetical protein; hypothetical protein 559792 4687059 Pnap_0530 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980772.1 559331 D 365044 CDS YP_980773.1 121603444 4687852 complement(559817..560221) 1 NC_008781.1 PFAM: BLUF domain protein; KEGG: pol:Bpro_0667 sensors of blue-light using FAD; BLUF domain-containing protein 560221 4687852 Pnap_0531 Polaromonas naphthalenivorans CJ2 BLUF domain-containing protein YP_980773.1 559817 R 365044 CDS YP_980774.1 121603445 4686145 560234..561064 1 NC_008781.1 PFAM: cyclic nucleotide-binding; KEGG: mfa:Mfla_1734 transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein 561064 4686145 Pnap_0532 Polaromonas naphthalenivorans CJ2 cyclic nucleotide-binding protein YP_980774.1 560234 D 365044 CDS YP_980775.1 121603446 4689522 561187..562608 1 NC_008781.1 KEGG: pol:Bpro_0671 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase 562608 4689522 Pnap_0533 Polaromonas naphthalenivorans CJ2 UDP-N-acetylglucosamine pyrophosphorylase YP_980775.1 561187 D 365044 CDS YP_980776.1 121603447 4689345 complement(563289..563771) 1 NC_008781.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_0674 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 563771 4689345 Pnap_0535 Polaromonas naphthalenivorans CJ2 AsnC family transcriptional regulator YP_980776.1 563289 R 365044 CDS YP_980777.1 121603448 4689262 563910..565766 1 NC_008781.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 565766 4689262 Pnap_0536 Polaromonas naphthalenivorans CJ2 glucosamine--fructose-6-phosphate aminotransferase YP_980777.1 563910 D 365044 CDS YP_980778.1 121603449 4686372 complement(565874..566455) 1 NC_008781.1 PFAM: transposase, IS4 family protein; KEGG: sal:Sala_0677 transposase, IS4; transposase, IS4 family protein 566455 4686372 Pnap_0537 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_980778.1 565874 R 365044 CDS YP_980779.1 121603450 4687739 566895..567371 1 NC_008781.1 PFAM: Rhodanese domain protein; KEGG: bxe:Bxe_B1556 hypothetical protein; rhodanese domain-containing protein 567371 4687739 Pnap_0538 Polaromonas naphthalenivorans CJ2 rhodanese domain-containing protein YP_980779.1 566895 D 365044 CDS YP_980780.1 121603451 4688477 567423..568349 1 NC_008781.1 KEGG: bxe:Bxe_B1555 serine O-acetyltransferase; Serine O-acetyltransferase 568349 4688477 Pnap_0539 Polaromonas naphthalenivorans CJ2 Serine O-acetyltransferase YP_980780.1 567423 D 365044 CDS YP_980781.1 121603452 4689908 568346..568618 1 NC_008781.1 PFAM: helix-turn-helix domain protein; KEGG: bpm:BURPS1710b_A0364 possible transcriptional regulator, XRE family, cupin domain; helix-turn-helix domain-containing protein 568618 4689908 Pnap_0540 Polaromonas naphthalenivorans CJ2 helix-turn-helix domain-containing protein YP_980781.1 568346 D 365044 CDS YP_980782.1 121603453 4687710 complement(568766..570121) 1 NC_008781.1 KEGG: bja:blr1916 putative transposase; putative transposase 570121 4687710 Pnap_0541 Polaromonas naphthalenivorans CJ2 putative transposase YP_980782.1 568766 R 365044 CDS YP_980783.1 121603454 4686154 570177..571058 1 NC_008781.1 KEGG: bxe:Bxe_B1553 hypothetical protein; hypothetical protein 571058 4686154 Pnap_0542 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980783.1 570177 D 365044 CDS YP_980784.1 121603455 4689205 571073..573112 1 NC_008781.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_C0124 cysteine desulphurases, SufS; SufS subfamily cysteine desulfurase 573112 4689205 Pnap_0543 Polaromonas naphthalenivorans CJ2 SufS subfamily cysteine desulfurase YP_980784.1 571073 D 365044 CDS YP_980785.1 121603456 4688781 573413..574417 1 NC_008781.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: pae:PA3449 putative sulfonate transport system substrate-binding protein; aliphatic sulfonates ABC transporter substrate-binding protein 574417 4688781 Pnap_0544 Polaromonas naphthalenivorans CJ2 aliphatic sulfonates ABC transporter substrate-binding protein YP_980785.1 573413 D 365044 CDS YP_980786.1 121603457 4686158 574425..575354 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcn:Bcen_6520 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 575354 4686158 Pnap_0545 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_980786.1 574425 D 365044 CDS YP_980787.1 121603458 4689040 575351..576088 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcn:Bcen_6521 ABC transporter related; ABC transporter-like protein 576088 4689040 Pnap_0546 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980787.1 575351 D 365044 CDS YP_980788.1 121603459 4687829 576594..577703 1 NC_008781.1 PFAM: luciferase family protein; KEGG: bacterial luciferase family protein; luciferase family protein 577703 4687829 Pnap_0547 Polaromonas naphthalenivorans CJ2 luciferase family protein YP_980788.1 576594 D 365044 CDS YP_980789.1 121603460 4687818 577720..578931 1 NC_008781.1 KEGG: long-chain-fatty-acid--CoA ligase-related protein; long-chain-fatty-acid--CoA ligase-like protein 578931 4687818 Pnap_0548 Polaromonas naphthalenivorans CJ2 long-chain-fatty-acid--CoA ligase-like protein YP_980789.1 577720 D 365044 CDS YP_980790.1 121603461 4687803 578946..579743 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: branched-chain amino acid ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 579743 4687803 Pnap_0549 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980790.1 578946 D 365044 CDS YP_980791.1 121603462 4687789 579765..580646 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: psp:PSPPH_2369 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 580646 4687789 Pnap_0550 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_980791.1 579765 D 365044 CDS YP_980792.1 121603463 4688090 580659..581726 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 581726 4688090 Pnap_0551 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_980792.1 580659 D 365044 CDS YP_980793.1 121603464 4687482 581780..583105 1 NC_008781.1 KEGG: ppu:PP_2770 hypothetical protein; hypothetical protein 583105 4687482 Pnap_0552 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980793.1 581780 D 365044 CDS YP_980794.1 121603465 4687374 583193..584434 1 NC_008781.1 PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: psp:PSPPH_2366 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase type 2 584434 4687374 Pnap_0553 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase type 2 YP_980794.1 583193 D 365044 CDS YP_980795.1 121603466 4687354 584498..585751 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: atc:AGR_pAT_773 hypothetical protein; acyl-CoA dehydrogenase type 2 585751 4687354 Pnap_0554 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase type 2 YP_980795.1 584498 D 365044 CDS YP_980796.1 121603467 4687277 586010..586771 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 586771 4687277 Pnap_0555 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980796.1 586010 D 365044 CDS YP_980797.1 121603468 4686635 complement(586812..587915) 1 NC_008781.1 PFAM: sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_3918 sigma-54 specific transcriptional regulator, fis family; response regulator receiver protein 587915 4686635 Pnap_0556 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_980797.1 586812 R 365044 CDS YP_980798.1 121603469 4686216 complement(587932..589119) 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pfo:Pfl_3917 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase type 2 589119 4686216 Pnap_0557 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase type 2 YP_980798.1 587932 R 365044 CDS YP_980799.1 121603470 4686568 complement(589201..589761) 1 NC_008781.1 PFAM: NADPH-dependent FMN reductase; KEGG: pfo:Pfl_3915 FMN reductase; FMN reductase 589761 4686568 Pnap_0558 Polaromonas naphthalenivorans CJ2 FMN reductase YP_980799.1 589201 R 365044 CDS YP_980800.1 121603471 4686142 589793..590053 1 NC_008781.1 hypothetical protein 590053 4686142 Pnap_0559 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980800.1 589793 D 365044 CDS YP_980801.1 121603472 4686116 590500..591714 1 NC_008781.1 PFAM: luciferase family protein; KEGG: bxe:Bxe_B1542 alkanesulfonate monooxygenase; alkanesulfonate monooxygenase 591714 4686116 Pnap_0560 Polaromonas naphthalenivorans CJ2 alkanesulfonate monooxygenase YP_980801.1 590500 D 365044 CDS YP_980802.1 121603473 4686091 591711..592562 1 NC_008781.1 PFAM: amidohydrolase 2; KEGG: bbr:BB1077 hypothetical protein; amidohydrolase 2 592562 4686091 Pnap_0561 Polaromonas naphthalenivorans CJ2 amidohydrolase 2 YP_980802.1 591711 D 365044 CDS YP_980803.1 121603474 4686064 592589..593578 1 NC_008781.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: eba:ebA4678 cysteine synthase A; cysteine synthase A 593578 4686064 Pnap_0562 Polaromonas naphthalenivorans CJ2 cysteine synthase A YP_980803.1 592589 D 365044 CDS YP_980804.1 121603475 4690220 593702..594727 1 NC_008781.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2345 thiosulphate-binding protein; sulfate ABC transporter substrate-binding protein 594727 4690220 Pnap_0563 Polaromonas naphthalenivorans CJ2 sulfate ABC transporter substrate-binding protein YP_980804.1 593702 D 365044 CDS YP_980805.1 121603476 4689678 594770..595945 1 NC_008781.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_3918 sigma-54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 595945 4689678 Pnap_0564 Polaromonas naphthalenivorans CJ2 sigma-54 dependent trancsriptional regulator YP_980805.1 594770 D 365044 CDS YP_980806.1 121603477 4686802 596039..598219 1 NC_008781.1 KEGG: ccr:CC0217 ThiO:disulfide interchange protein, putative; thiol:disulfide interchange protein 598219 4686802 Pnap_0565 Polaromonas naphthalenivorans CJ2 thiol:disulfide interchange protein YP_980806.1 596039 D 365044 CDS YP_980807.1 121603478 4688997 complement(598299..599864) 1 NC_008781.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS02156 putative outer membrane drug efflux lipoprotein; RND efflux system outer membrane lipoprotein 599864 4688997 Pnap_0566 Polaromonas naphthalenivorans CJ2 RND efflux system outer membrane lipoprotein YP_980807.1 598299 R 365044 CDS YP_980808.1 121603479 4687891 complement(599861..601135) 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS02155 putative transport transmembrane protein; RND family efflux transporter MFP subunit 601135 4687891 Pnap_0567 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_980808.1 599861 R 365044 CDS YP_980809.1 121603480 4686556 complement(601160..604357) 1 NC_008781.1 PFAM: acriflavin resistance protein; KEGG: rso:RS02154 probable transport transmembrane protein; acriflavin resistance protein 604357 4686556 Pnap_0568 Polaromonas naphthalenivorans CJ2 acriflavin resistance protein YP_980809.1 601160 R 365044 CDS YP_980810.1 121603481 4687780 complement(604587..605063) 1 NC_008781.1 PFAM: cytochrome c, class II; KEGG: mag:amb0751 cytochrome c' precursor; class II cytochrome c 605063 4687780 Pnap_0569 Polaromonas naphthalenivorans CJ2 class II cytochrome c YP_980810.1 604587 R 365044 CDS YP_980811.1 121603482 4689206 complement(605150..606154) 1 NC_008781.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rba:RB1022 gluconolactonase; SMP-30/gluconolaconase/LRE domain-containing protein 606154 4689206 Pnap_0570 Polaromonas naphthalenivorans CJ2 SMP-30/gluconolaconase/LRE domain-containing protein YP_980811.1 605150 R 365044 CDS YP_980812.1 121603483 4687365 complement(606183..606791) 1 NC_008781.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bte:BTH_II0300 bcp; redoxin domain-containing protein 606791 4687365 Pnap_0571 Polaromonas naphthalenivorans CJ2 redoxin domain-containing protein YP_980812.1 606183 R 365044 CDS YP_980813.1 121603484 4687733 complement(606823..607506) 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: sdn:Sden_3622 cytochrome c, class I; class I cytochrome c 607506 4687733 Pnap_0572 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_980813.1 606823 R 365044 CDS YP_980814.1 121603485 4686202 complement(607522..607935) 1 NC_008781.1 hypothetical protein 607935 4686202 Pnap_0573 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980814.1 607522 R 365044 CDS YP_980815.1 121603486 4689881 complement(607966..609417) 1 NC_008781.1 PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_1146 protein of unknown function DUF1501; hypothetical protein 609417 4689881 Pnap_0574 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980815.1 607966 R 365044 CDS YP_980816.1 121603487 4686266 complement(609455..611803) 1 NC_008781.1 PFAM: protein of unknown function DUF1549; KEGG: rba:RB2845 hypothetical protein-transmembrane prediction; hypothetical protein 611803 4686266 Pnap_0575 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980816.1 609455 R 365044 CDS YP_980817.1 121603488 4686368 612254..613768 1 NC_008781.1 hypothetical protein 613768 4686368 Pnap_0576 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980817.1 612254 D 365044 CDS YP_980818.1 121603489 4686390 613798..614886 1 NC_008781.1 KEGG: bcn:Bcen_4344 ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein 614886 4686390 Pnap_0577 Polaromonas naphthalenivorans CJ2 nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein YP_980818.1 613798 D 365044 CDS YP_980819.1 121603490 4686394 614962..615825 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_B2062 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit; binding-protein-dependent transport system inner membrane protein 615825 4686394 Pnap_0578 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_980819.1 614962 D 365044 CDS YP_980820.1 121603491 4686446 615843..616661 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C0132 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit; binding-protein-dependent transport system inner membrane protein 616661 4686446 Pnap_0579 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_980820.1 615843 D 365044 CDS YP_980821.1 121603492 4686478 616721..617518 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A2157 putative ABC sulfate ester transporter, ATPase subunit; ABC transporter-like protein 617518 4686478 Pnap_0580 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980821.1 616721 D 365044 CDS YP_980822.1 121603493 4686486 617587..618333 1 NC_008781.1 KEGG: bja:bll5801 hypothetical protein; hypothetical protein 618333 4686486 Pnap_0581 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980822.1 617587 D 365044 CDS YP_980823.1 121603494 4686642 complement(618504..619172) 1 NC_008781.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: eba:ebA3526 putative cyctochrome C biogenesis protein; hypothetical protein 619172 4686642 Pnap_0582 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980823.1 618504 R 365044 CDS YP_980824.1 121603495 4686646 complement(619169..619570) 1 NC_008781.1 PFAM: cytochrome C biogenesis protein; KEGG: reu:Reut_B4772 cytochrome c biogenesis protein; cytochrome C biogenesis protein 619570 4686646 Pnap_0583 Polaromonas naphthalenivorans CJ2 cytochrome C biogenesis protein YP_980824.1 619169 R 365044 CDS YP_980825.1 121603496 4687369 complement(619563..620090) 1 NC_008781.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: dar:Daro_3997 periplasmic protein thiol:disulfide oxidoreductase DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 620090 4687369 Pnap_0584 Polaromonas naphthalenivorans CJ2 periplasmic protein thiol--disulfide oxidoreductase DsbE YP_980825.1 619563 R 365044 CDS YP_980826.1 121603497 4687180 complement(620099..622096) 1 NC_008781.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: neu:NE0768 cytochrome c-type biogenesis protein (CcmF); cytochrome c-type biogenesis protein CcmF 622096 4687180 Pnap_0585 Polaromonas naphthalenivorans CJ2 cytochrome c-type biogenesis protein CcmF YP_980826.1 620099 R 365044 CDS YP_980827.1 121603498 4687240 complement(622093..622542) 1 NC_008781.1 PFAM: CcmE/CycJ protein; KEGG: net:Neut_0060 CcmE/CycJ protein; CcmE/CycJ protein 622542 4687240 Pnap_0586 Polaromonas naphthalenivorans CJ2 CcmE/CycJ protein YP_980827.1 622093 R 365044 CDS YP_980828.1 121603499 4688064 complement(622718..623506) 1 NC_008781.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: nmu:Nmul_A1212 heme exporter protein CcmC; heme exporter protein CcmC 623506 4688064 Pnap_0587 Polaromonas naphthalenivorans CJ2 heme exporter protein CcmC YP_980828.1 622718 R 365044 CDS YP_980829.1 121603500 4688756 complement(623530..624198) 1 NC_008781.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: nmu:Nmul_A1216 heme exporter protein CcmB; heme exporter protein CcmB 624198 4688756 Pnap_0588 Polaromonas naphthalenivorans CJ2 heme exporter protein CcmB YP_980829.1 623530 R 365044 CDS YP_980830.1 121603501 4688592 complement(624192..624836) 1 NC_008781.1 KEGG: neu:NE0764 ABC superfamily (atp_bind), heme exporter protein, cytochrome c-type biogenesis protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; heme exporter protein CcmA 624836 4688592 Pnap_0589 Polaromonas naphthalenivorans CJ2 heme exporter protein CcmA YP_980830.1 624192 R 365044 CDS YP_980831.1 121603502 4686597 complement(624830..625630) 1 NC_008781.1 PFAM: cytochrome B561; KEGG: dar:Daro_3282 cytochrome b561, bacterial; cytochrome B561 625630 4686597 Pnap_0590 Polaromonas naphthalenivorans CJ2 cytochrome B561 YP_980831.1 624830 R 365044 CDS YP_980832.1 121603503 4688843 complement(625646..626110) 1 NC_008781.1 KEGG: ttj:TTHA0836 rhodanese-like domain protein; hypothetical protein 626110 4688843 Pnap_0591 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980832.1 625646 R 365044 CDS YP_980833.1 121603504 4688884 complement(626748..627113) 1 NC_008781.1 PFAM: transposase, IS4 family protein; KEGG: ccr:CC2592 ISCc1, transposase OrfB; transposase, IS4 family protein 627113 4688884 Pnap_0593 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_980833.1 626748 R 365044 CDS YP_980834.1 121603505 4686723 complement(627285..628640) 1 NC_008781.1 KEGG: bja:blr1916 putative transposase; putative transposase 628640 4686723 Pnap_0594 Polaromonas naphthalenivorans CJ2 putative transposase YP_980834.1 627285 R 365044 CDS YP_980835.1 121603506 4686774 628997..629239 1 NC_008781.1 PFAM: phage Tail Collar domain protein; KEGG: mlo:mll4441 microcystin dependent protein MdpB; phage tail collar domain-containing protein 629239 4686774 Pnap_0595 Polaromonas naphthalenivorans CJ2 phage tail collar domain-containing protein YP_980835.1 628997 D 365044 CDS YP_980836.1 121603507 4690090 complement(629270..629572) 1 NC_008781.1 hypothetical protein 629572 4690090 Pnap_0596 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980836.1 629270 R 365044 CDS YP_980837.1 121603508 4686786 629705..630034 1 NC_008781.1 KEGG: plu:plu4334 hypothetical protein; hypothetical protein 630034 4686786 Pnap_0597 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980837.1 629705 D 365044 CDS YP_980838.1 121603509 4690163 630162..631676 1 NC_008781.1 PFAM: FAD linked oxidase domain protein; KEGG: sco:SCO5857 FAD-dependent oxidoreductase; FAD linked oxidase domain-containing protein 631676 4690163 Pnap_0598 Polaromonas naphthalenivorans CJ2 FAD linked oxidase domain-containing protein YP_980838.1 630162 D 365044 CDS YP_980839.1 121603510 4689482 complement(631708..632685) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB0660 hypothetical protein; hypothetical protein 632685 4689482 Pnap_0599 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980839.1 631708 R 365044 CDS YP_980840.1 121603511 4686957 complement(632717..633355) 1 NC_008781.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: rso:RS03175 putative transferase protein; dimethylmenaquinone methyltransferase 633355 4686957 Pnap_0600 Polaromonas naphthalenivorans CJ2 dimethylmenaquinone methyltransferase YP_980840.1 632717 R 365044 CDS YP_980841.1 121603512 4687175 complement(633394..634260) 1 NC_008781.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: nar:Saro_2815 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 634260 4687175 Pnap_0601 Polaromonas naphthalenivorans CJ2 6-phosphogluconate dehydrogenase YP_980841.1 633394 R 365044 CDS YP_980842.1 121603513 4688365 634463..635125 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: nar:Saro_0179 transcriptional regulator, GntR family; GntR family transcriptional regulator 635125 4688365 Pnap_0602 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_980842.1 634463 D 365044 CDS YP_980843.1 121603514 4688304 complement(635157..635624) 1 NC_008781.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3119 transcriptional regulator, MarR family; MarR family transcriptional regulator 635624 4688304 Pnap_0603 Polaromonas naphthalenivorans CJ2 MarR family transcriptional regulator YP_980843.1 635157 R 365044 CDS YP_980844.1 121603515 4687396 complement(635771..636760) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3116 twin-arginine translocation pathway signal; hypothetical protein 636760 4687396 Pnap_0604 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980844.1 635771 R 365044 CDS YP_980845.1 121603516 4687522 complement(637033..637815) 1 NC_008781.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 637815 4687522 Pnap_0605 Polaromonas naphthalenivorans CJ2 enoyl-CoA hydratase YP_980845.1 637033 R 365044 CDS YP_980846.1 121603517 4690084 637966..638841 1 NC_008781.1 PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0275 amidohydrolase 2; amidohydrolase 2 638841 4690084 Pnap_0606 Polaromonas naphthalenivorans CJ2 amidohydrolase 2 YP_980846.1 637966 D 365044 CDS YP_980847.1 121603518 4687428 complement(638908..639954) 1 NC_008781.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bja:bll6212 transcriptional regulatory protein; helix-turn-helix domain-containing protein 639954 4687428 Pnap_0607 Polaromonas naphthalenivorans CJ2 helix-turn-helix domain-containing protein YP_980847.1 638908 R 365044 CDS YP_980848.1 121603519 4687213 640253..641245 1 NC_008781.1 KEGG: xac:XAC0352 hypothetical protein; hypothetical protein 641245 4687213 Pnap_0608 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980848.1 640253 D 365044 CDS YP_980849.1 121603520 4686764 641306..642568 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_5958 major facilitator family transporter, putative; major facilitator superfamily transporter 642568 4686764 Pnap_0609 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_980849.1 641306 D 365044 CDS YP_980850.1 121603521 4690028 642669..644111 1 NC_008781.1 PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 644111 4690028 Pnap_0610 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_980850.1 642669 D 365044 CDS YP_980851.1 121603522 4690039 644191..645636 1 NC_008781.1 PFAM: Carotenoid oxygenase; KEGG: ana:all1106 similar to neoxanthin cleavage enzyme; carotenoid oxygenase 645636 4690039 Pnap_0611 Polaromonas naphthalenivorans CJ2 carotenoid oxygenase YP_980851.1 644191 D 365044 CDS YP_980852.1 121603523 4686285 complement(645800..647002) 1 NC_008781.1 KEGG: bmb:BruAb2_1109 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, hypothetical; branched chain amino-acid ABC transporter substrate-binding protein 647002 4686285 Pnap_0612 Polaromonas naphthalenivorans CJ2 branched chain amino-acid ABC transporter substrate-binding protein YP_980852.1 645800 R 365044 CDS YP_980853.1 121603524 4686070 complement(647219..648454) 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB 648454 4686070 Pnap_0613 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_980853.1 647219 R 365044 CDS YP_980854.1 121603525 4686338 648849..649673 1 NC_008781.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5807 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 649673 4686338 Pnap_0614 Polaromonas naphthalenivorans CJ2 glyoxalase/bleomycin resistance protein/dioxygenase YP_980854.1 648849 D 365044 CDS YP_980855.1 121603526 4686381 649701..650486 1 NC_008781.1 PFAM: regulatory proteins, IclR; Helix-turn-helix, type 11 domain protein; KEGG: reu:Reut_B5810 regulatory protein, IclR; helix-turn-helix, type 11 domain-containing protein 650486 4686381 Pnap_0615 Polaromonas naphthalenivorans CJ2 helix-turn-helix, type 11 domain-containing protein YP_980855.1 649701 D 365044 CDS YP_980856.1 121603527 4686322 650483..652225 1 NC_008781.1 catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate; 3-(3-hydroxyphenyl)propionate hydroxylase 652225 mhpA 4686322 mhpA Polaromonas naphthalenivorans CJ2 3-(3-hydroxyphenyl)propionate hydroxylase YP_980856.1 650483 D 365044 CDS YP_980857.1 121603528 4686080 652245..653270 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065; hypothetical protein 653270 4686080 Pnap_0617 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980857.1 652245 D 365044 CDS YP_980858.1 121603529 4686094 653369..654217 1 NC_008781.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bja:blr5285 hypothetical protein; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 654217 4686094 Pnap_0618 Polaromonas naphthalenivorans CJ2 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_980858.1 653369 D 365044 CDS YP_980859.1 121603530 4686122 complement(654289..656124) 1 NC_008781.1 KEGG: rpc:RPC_2961 putative flavoprotein involved in K+ transport; putative potassium transport flavoprotein 656124 4686122 Pnap_0619 Polaromonas naphthalenivorans CJ2 putative potassium transport flavoprotein YP_980859.1 654289 R 365044 CDS YP_980860.1 121603531 4686453 complement(656373..658334) 1 NC_008781.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: reu:Reut_B5548 helix-turn-helix, fis-type; Fis family GAF modulated sigma54 specific transcriptional regulator 658334 4686453 Pnap_0620 Polaromonas naphthalenivorans CJ2 Fis family GAF modulated sigma54 specific transcriptional regulator YP_980860.1 656373 R 365044 CDS YP_980861.1 121603532 4686452 complement(658482..658904) 1 NC_008781.1 PFAM: helix-turn-helix, HxlR type; KEGG: stm:STM4402 putative transcriptional regulator; HxlR family transcriptional regulator 658904 4686452 Pnap_0621 Polaromonas naphthalenivorans CJ2 HxlR family transcriptional regulator YP_980861.1 658482 R 365044 CDS YP_980862.1 121603533 4686475 658994..659848 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: yps:YPTB2423 hypothetical protein; NmrA family protein 659848 4686475 Pnap_0622 Polaromonas naphthalenivorans CJ2 NmrA family protein YP_980862.1 658994 D 365044 CDS YP_980863.1 121603534 4686433 660162..660608 1 NC_008781.1 KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease; DNA/RNA endonuclease G NUC1-like protein 660608 4686433 Pnap_0623 Polaromonas naphthalenivorans CJ2 DNA/RNA endonuclease G NUC1-like protein YP_980863.1 660162 D 365044 CDS YP_980864.1 121603535 4688182 660757..661482 1 NC_008781.1 PFAM: Endonuclease I; KEGG: cvi:CV1988 deoxyribonuclease I; deoxyribonuclease I 661482 4688182 Pnap_0624 Polaromonas naphthalenivorans CJ2 deoxyribonuclease I YP_980864.1 660757 D 365044 CDS YP_980865.1 121603536 4686124 complement(661587..662594) 1 NC_008781.1 hypothetical protein 662594 4686124 Pnap_0625 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980865.1 661587 R 365044 CDS YP_980866.1 121603537 4686407 complement(662650..663111) 1 NC_008781.1 hypothetical protein 663111 4686407 Pnap_0626 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980866.1 662650 R 365044 CDS YP_980867.1 121603538 4686502 complement(663151..663846) 1 NC_008781.1 KEGG: bxe:Bxe_B0034 hypothetical protein; hypothetical protein 663846 4686502 Pnap_0627 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980867.1 663151 R 365044 CDS YP_980868.1 121603539 4686494 complement(663843..667040) 1 NC_008781.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0035 putative phage integrase; phage integrase family protein 667040 4686494 Pnap_0628 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_980868.1 663843 R 365044 CDS YP_980869.1 121603540 4686131 complement(667037..668359) 1 NC_008781.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_B0036 hypothetical protein; phage integrase family protein 668359 4686131 Pnap_0629 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_980869.1 667037 R 365044 CDS YP_980870.1 121603541 4686159 668680..669192 1 NC_008781.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5415 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 669192 4686159 Pnap_0630 Polaromonas naphthalenivorans CJ2 DNA/RNA non-specific endonuclease YP_980870.1 668680 D 365044 CDS YP_980871.1 121603542 4686174 669209..669457 1 NC_008781.1 KEGG: aci:ACIAD3407 hypothetical protein; hypothetical protein 669457 4686174 Pnap_0631 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980871.1 669209 D 365044 CDS YP_980872.1 121603543 4686534 complement(669441..670280) 1 NC_008781.1 KEGG: dar:Daro_3554 hypothetical protein; hypothetical protein 670280 4686534 Pnap_0632 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980872.1 669441 R 365044 CDS YP_980873.1 121603544 4686594 complement(670342..672060) 1 NC_008781.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: reu:Reut_B4742 TrkA-N:sodium/hydrogen exchanger; sodium/hydrogen exchanger 672060 4686594 Pnap_0633 Polaromonas naphthalenivorans CJ2 sodium/hydrogen exchanger YP_980873.1 670342 R 365044 CDS YP_980874.1 121603545 4686128 complement(672039..673535) 1 NC_008781.1 KEGG: pol:Bpro_1195 hypothetical protein; hypothetical protein 673535 4686128 Pnap_0634 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980874.1 672039 R 365044 CDS YP_980875.1 121603546 4686608 673732..673983 1 NC_008781.1 PFAM: Transglycosylase-associated protein; KEGG: bba:Bd1857 putative transglycosylase-associated protein; transglycosylase-associated protein 673983 4686608 Pnap_0635 Polaromonas naphthalenivorans CJ2 transglycosylase-associated protein YP_980875.1 673732 D 365044 CDS YP_980876.1 121603547 4687312 674080..674805 1 NC_008781.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: pol:Bpro_0734 ExsB; exsB protein 674805 4687312 Pnap_0636 Polaromonas naphthalenivorans CJ2 exsB protein YP_980876.1 674080 D 365044 CDS YP_980877.1 121603548 4687185 complement(674809..676419) 1 NC_008781.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0736 protein of unknown function DUF894, DitE; hypothetical protein 676419 4687185 Pnap_0637 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980877.1 674809 R 365044 CDS YP_980878.1 121603549 4687388 complement(676432..678264) 1 NC_008781.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0737 ABC transporter-like; ABC transporter 678264 4687388 Pnap_0638 Polaromonas naphthalenivorans CJ2 ABC transporter YP_980878.1 676432 R 365044 CDS YP_980879.1 121603550 4687204 complement(678287..679267) 1 NC_008781.1 PFAM: 5-nucleotidase; KEGG: pol:Bpro_0738 5-nucleotidase; 5'-nucleotidase 679267 4687204 Pnap_0639 Polaromonas naphthalenivorans CJ2 5'-nucleotidase YP_980879.1 678287 R 365044 CDS YP_980880.1 121603551 4687450 complement(679304..679858) 1 NC_008781.1 PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_0739 phosphoglycerate mutase; phosphoglycerate mutase 679858 4687450 Pnap_0640 Polaromonas naphthalenivorans CJ2 phosphoglycerate mutase YP_980880.1 679304 R 365044 CDS YP_980881.1 121603552 4687411 complement(679863..680699) 1 NC_008781.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: pol:Bpro_0740 cobalamin 5'-phosphate synthase; cobalamin-5-phosphate synthase CobS 680699 4687411 Pnap_0641 Polaromonas naphthalenivorans CJ2 cobalamin-5-phosphate synthase CobS YP_980881.1 679863 R 365044 CDS YP_980882.1 121603553 4687477 complement(680708..681760) 1 NC_008781.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: pol:Bpro_0741 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 681760 4687477 Pnap_0642 Polaromonas naphthalenivorans CJ2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_980882.1 680708 R 365044 CDS YP_980883.1 121603554 4687940 complement(681723..681968) 1 NC_008781.1 KEGG: pol:Bpro_0742 hypothetical protein; hypothetical protein 681968 4687940 Pnap_0643 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980883.1 681723 R 365044 CDS YP_980884.1 121603555 4688043 complement(681977..683626) 1 NC_008781.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 683626 4688043 Pnap_0644 Polaromonas naphthalenivorans CJ2 threonine dehydratase YP_980884.1 681977 R 365044 CDS YP_980885.1 121603556 4687729 683953..684411 1 NC_008781.1 PFAM: OsmC family protein; KEGG: pol:Bpro_0744 OsmC-like protein; OsmC family protein 684411 4687729 Pnap_0645 Polaromonas naphthalenivorans CJ2 OsmC family protein YP_980885.1 683953 D 365044 CDS YP_980886.1 121603557 4687725 complement(684425..685054) 1 NC_008781.1 KEGG: pol:Bpro_0745 putative ubiquinone biosynthesis protein; putative ubiquinone biosynthesis protein 685054 4687725 Pnap_0646 Polaromonas naphthalenivorans CJ2 putative ubiquinone biosynthesis protein YP_980886.1 684425 R 365044 CDS YP_980887.1 121603558 4687163 complement(685250..686545) 1 NC_008781.1 KEGG: pol:Bpro_0746 outer membrane protein (porin)-like; outer membrane protein (porin)-like protein 686545 4687163 Pnap_0647 Polaromonas naphthalenivorans CJ2 outer membrane protein (porin)-like protein YP_980887.1 685250 R 365044 CDS YP_980888.1 121603559 4688116 686561..686914 1 NC_008781.1 hypothetical protein 686914 4688116 Pnap_0648 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980888.1 686561 D 365044 CDS YP_980889.1 121603560 4686342 687116..688150 1 NC_008781.1 PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type; porin 688150 4686342 Pnap_0649 Polaromonas naphthalenivorans CJ2 porin YP_980889.1 687116 D 365044 CDS YP_980890.1 121603561 4687869 688495..689604 1 NC_008781.1 PFAM: porin, Gram-negative type; KEGG: pol:Bpro_0747 porin, gram-negative type; porin 689604 4687869 Pnap_0650 Polaromonas naphthalenivorans CJ2 porin YP_980890.1 688495 D 365044 CDS YP_980891.1 121603562 4688713 689844..691187 1 NC_008781.1 KEGG: pol:Bpro_0749 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 691187 4688713 Pnap_0651 Polaromonas naphthalenivorans CJ2 amidohydrolase YP_980891.1 689844 D 365044 CDS YP_980892.1 121603563 4687875 complement(691329..692174) 1 NC_008781.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0750 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 692174 4687875 Pnap_0652 Polaromonas naphthalenivorans CJ2 RpiR family transcriptional regulator YP_980892.1 691329 R 365044 CDS YP_980893.1 121603564 4688749 complement(692176..693687) 1 NC_008781.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 693687 4688749 Pnap_0653 Polaromonas naphthalenivorans CJ2 glucose-6-phosphate 1-dehydrogenase YP_980893.1 692176 R 365044 CDS YP_980894.1 121603565 4688193 693791..694738 1 NC_008781.1 KEGG: pol:Bpro_0752 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 694738 4688193 Pnap_0654 Polaromonas naphthalenivorans CJ2 transaldolase B YP_980894.1 693791 D 365044 CDS YP_980895.1 121603566 4686582 694761..696326 1 NC_008781.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 696326 pgi 4686582 pgi Polaromonas naphthalenivorans CJ2 glucose-6-phosphate isomerase YP_980895.1 694761 D 365044 CDS YP_980896.1 121603567 4688803 696423..696752 1 NC_008781.1 PFAM: protein of unknown function DUF805; KEGG: pol:Bpro_0755 protein of unknown function DUF805; hypothetical protein 696752 4688803 Pnap_0656 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980896.1 696423 D 365044 CDS YP_980897.1 121603568 4687099 complement(696891..698540) 1 NC_008781.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 698540 groEL 4687099 groEL Polaromonas naphthalenivorans CJ2 chaperonin GroEL YP_980897.1 696891 R 365044 CDS YP_980898.1 121603569 4688825 complement(698644..698934) 1 NC_008781.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 698934 groES 4688825 groES Polaromonas naphthalenivorans CJ2 co-chaperonin GroES YP_980898.1 698644 R 365044 CDS YP_980899.1 121603570 4688621 699292..699978 1 NC_008781.1 hypothetical protein 699978 4688621 Pnap_0659 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980899.1 699292 D 365044 CDS YP_980900.1 121603571 4688664 complement(700053..701240) 1 NC_008781.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 701240 4688664 Pnap_0660 Polaromonas naphthalenivorans CJ2 S-adenosylmethionine synthetase YP_980900.1 700053 R 365044 CDS YP_980901.1 121603572 4686656 701410..702258 1 NC_008781.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_0768 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 702258 4686656 Pnap_0661 Polaromonas naphthalenivorans CJ2 lipid A biosynthesis acyltransferase YP_980901.1 701410 D 365044 CDS YP_980902.1 121603573 4688926 702255..703151 1 NC_008781.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_0769 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 703151 4688926 Pnap_0662 Polaromonas naphthalenivorans CJ2 lipid A biosynthesis acyltransferase YP_980902.1 702255 D 365044 CDS YP_980903.1 121603574 4686720 complement(703264..704043) 1 NC_008781.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 704043 engB 4686720 engB Polaromonas naphthalenivorans CJ2 ribosome biogenesis GTP-binding protein YsxC YP_980903.1 703264 R 365044 CDS YP_980904.1 121603575 4688599 704244..704921 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_0772 cytochrome c, class I; class I cytochrome c 704921 4688599 Pnap_0664 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_980904.1 704244 D 365044 CDS YP_980905.1 121603576 4688930 705119..707347 1 NC_008781.1 PFAM: ResB family protein; KEGG: pol:Bpro_0773 ResB-like; ResB family protein 707347 4688930 Pnap_0665 Polaromonas naphthalenivorans CJ2 ResB family protein YP_980905.1 705119 D 365044 CDS YP_980906.1 121603577 4689160 707344..708735 1 NC_008781.1 PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_0774 cytochrome c assembly protein; cytochrome c assembly protein 708735 4689160 Pnap_0666 Polaromonas naphthalenivorans CJ2 cytochrome c assembly protein YP_980906.1 707344 D 365044 CDS YP_980907.1 121603578 4689159 708811..709809 1 NC_008781.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 709809 4689159 Pnap_0667 Polaromonas naphthalenivorans CJ2 putative sulfite oxidase subunit YedY YP_980907.1 708811 D 365044 CDS YP_980908.1 121603579 4686722 709809..710468 1 NC_008781.1 PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: pol:Bpro_0776 ferric reductase-like transmembrane component-like; ferric reductase domain-containing protein 710468 4686722 Pnap_0668 Polaromonas naphthalenivorans CJ2 ferric reductase domain-containing protein YP_980908.1 709809 D 365044 CDS YP_980909.1 121603580 4689207 complement(710569..711855) 1 NC_008781.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pol:Bpro_0777 diaminopimelate decarboxylase; diaminopimelate decarboxylase 711855 4689207 Pnap_0669 Polaromonas naphthalenivorans CJ2 diaminopimelate decarboxylase YP_980909.1 710569 R 365044 CDS YP_980910.1 121603581 4689480 712198..712548 1 NC_008781.1 PFAM: Frataxin family protein; KEGG: pol:Bpro_0779 frataxin-like; frataxin family protein 712548 4689480 Pnap_0670 Polaromonas naphthalenivorans CJ2 frataxin family protein YP_980910.1 712198 D 365044 CDS YP_980911.1 121603582 4686743 complement(712620..715037) 1 NC_008781.1 KEGG: pol:Bpro_0780 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein 715037 4686743 Pnap_0671 Polaromonas naphthalenivorans CJ2 1A family penicillin-binding protein YP_980911.1 712620 R 365044 CDS YP_980912.1 121603583 4688931 715297..716376 1 NC_008781.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 716376 4688931 Pnap_0672 Polaromonas naphthalenivorans CJ2 type IV pilus assembly protein PilM YP_980912.1 715297 D 365044 CDS YP_980913.1 121603584 4686747 716487..716978 1 NC_008781.1 PFAM: Fimbrial assembly family protein; KEGG: pol:Bpro_0782 fimbrial assembly; fimbrial assembly family protein 716978 4686747 Pnap_0673 Polaromonas naphthalenivorans CJ2 fimbrial assembly family protein YP_980913.1 716487 D 365044 CDS YP_980914.1 121603585 4689583 717000..717674 1 NC_008781.1 PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO; pilus assembly protein PilO 717674 4689583 Pnap_0674 Polaromonas naphthalenivorans CJ2 pilus assembly protein PilO YP_980914.1 717000 D 365044 CDS YP_980915.1 121603586 4689588 717671..718222 1 NC_008781.1 PFAM: Pilus assembly protein, PilQ; KEGG: pol:Bpro_0784 pilus assembly protein, PilQ; pilus assembly protein, PilQ 718222 4689588 Pnap_0675 Polaromonas naphthalenivorans CJ2 pilus assembly protein, PilQ YP_980915.1 717671 D 365044 CDS YP_980916.1 121603587 4689651 718219..720357 1 NC_008781.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: pol:Bpro_0785 type II and III secretion system protein; type IV pilus secretin PilQ 720357 4689651 Pnap_0676 Polaromonas naphthalenivorans CJ2 type IV pilus secretin PilQ YP_980916.1 718219 D 365044 CDS YP_980917.1 121603588 4690156 720528..722444 1 NC_008781.1 KEGG: sdn:Sden_3069 hypothetical protein; hypothetical protein 722444 4690156 Pnap_0677 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980917.1 720528 D 365044 CDS YP_980918.1 121603589 4690094 722456..723004 1 NC_008781.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 723004 aroK 4690094 aroK Polaromonas naphthalenivorans CJ2 shikimate kinase YP_980918.1 722456 D 365044 CDS YP_980919.1 121603590 4689702 723057..724175 1 NC_008781.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 724175 aroB 4689702 aroB Polaromonas naphthalenivorans CJ2 3-dehydroquinate synthase YP_980919.1 723057 D 365044 CDS YP_980920.1 121603591 4689756 724261..725457 1 NC_008781.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 725457 4689756 Pnap_0680 Polaromonas naphthalenivorans CJ2 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_980920.1 724261 D 365044 CDS YP_980921.1 121603592 4689745 725613..726761 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0789 extracellular ligand-binding receptor; extracellular ligand-binding receptor 726761 4689745 Pnap_0681 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_980921.1 725613 D 365044 CDS YP_980922.1 121603593 4689750 726827..727525 1 NC_008781.1 PFAM: protein of unknown function DUF1568; KEGG: pol:Bpro_0790 protein of unknown function DUF1568; hypothetical protein 727525 4689750 Pnap_0682 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980922.1 726827 D 365044 CDS YP_980923.1 121603594 4686794 727757..732499 1 NC_008781.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: pol:Bpro_0791 glutamate synthase (ferredoxin); glutamate synthase 732499 4686794 Pnap_0683 Polaromonas naphthalenivorans CJ2 glutamate synthase YP_980923.1 727757 D 365044 CDS YP_980924.1 121603595 4686808 732641..734107 1 NC_008781.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 734107 gltD 4686808 gltD Polaromonas naphthalenivorans CJ2 glutamate synthase subunit beta YP_980924.1 732641 D 365044 CDS YP_980925.1 121603596 4689630 734191..735072 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2935 ABC transporter related; ABC transporter-like protein 735072 4689630 Pnap_0685 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980925.1 734191 D 365044 CDS YP_980926.1 121603597 4689429 735069..735851 1 NC_008781.1 PFAM: protein of unknown function DUF140; KEGG: rfr:Rfer_2936 protein of unknown function DUF140; hypothetical protein 735851 4689429 Pnap_0686 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980926.1 735069 D 365044 CDS YP_980927.1 121603598 4689622 735933..736442 1 NC_008781.1 PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0795 mammalian cell entry related; hypothetical protein 736442 4689622 Pnap_0687 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980927.1 735933 D 365044 CDS YP_980928.1 121603599 4686816 736439..737224 1 NC_008781.1 PFAM: VacJ family lipoprotein; KEGG: pol:Bpro_0796 VacJ-like lipoprotein; VacJ family lipoprotein 737224 4686816 Pnap_0688 Polaromonas naphthalenivorans CJ2 VacJ family lipoprotein YP_980928.1 736439 D 365044 CDS YP_980929.1 121603600 4689115 737395..738033 1 NC_008781.1 PFAM: toluene tolerance family protein; KEGG: pol:Bpro_0797 toluene tolerance; toluene tolerance family protein 738033 4689115 Pnap_0689 Polaromonas naphthalenivorans CJ2 toluene tolerance family protein YP_980929.1 737395 D 365044 CDS YP_980930.1 121603601 4689381 738048..738341 1 NC_008781.1 KEGG: pol:Bpro_0798 anti-sigma-factor antagonist (STAS) domain protein; anti-sigma-factor antagonist domain-containing protein 738341 4689381 Pnap_0690 Polaromonas naphthalenivorans CJ2 anti-sigma-factor antagonist domain-containing protein YP_980930.1 738048 D 365044 CDS YP_980931.1 121603602 4689995 738437..739396 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0799 ABC transporter related; ABC transporter-like protein 739396 4689995 Pnap_0691 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980931.1 738437 D 365044 CDS YP_980932.1 121603603 4687074 739393..740148 1 NC_008781.1 PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0800 ABC-2; ABC transporter 740148 4687074 Pnap_0692 Polaromonas naphthalenivorans CJ2 ABC transporter YP_980932.1 739393 D 365044 CDS YP_980933.1 121603604 4688863 740172..740417 1 NC_008781.1 PFAM: BolA family protein; KEGG: pol:Bpro_0801 BolA-like protein; BolA family protein 740417 4688863 Pnap_0693 Polaromonas naphthalenivorans CJ2 BolA family protein YP_980933.1 740172 D 365044 CDS YP_980934.1 121603605 4688967 740423..741697 1 NC_008781.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 741697 4688967 Pnap_0694 Polaromonas naphthalenivorans CJ2 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_980934.1 740423 D 365044 CDS YP_980935.1 121603606 4689626 741694..742347 1 NC_008781.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 742347 hisG 4689626 hisG Polaromonas naphthalenivorans CJ2 ATP phosphoribosyltransferase catalytic subunit YP_980935.1 741694 D 365044 CDS YP_980936.1 121603607 4688733 742361..743704 1 NC_008781.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 743704 hisD 4688733 hisD Polaromonas naphthalenivorans CJ2 histidinol dehydrogenase YP_980936.1 742361 D 365044 CDS YP_980937.1 121603608 4688298 743705..744802 1 NC_008781.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 744802 4688298 Pnap_0697 Polaromonas naphthalenivorans CJ2 histidinol-phosphate aminotransferase YP_980937.1 743705 D 365044 CDS YP_980938.1 121603609 4687350 744799..745419 1 NC_008781.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 745419 hisB 4687350 hisB Polaromonas naphthalenivorans CJ2 imidazoleglycerol-phosphate dehydratase YP_980938.1 744799 D 365044 CDS YP_980939.1 121603610 4688317 745444..746199 1 NC_008781.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 746199 hisH 4688317 hisH Polaromonas naphthalenivorans CJ2 imidazole glycerol phosphate synthase subunit HisH YP_980939.1 745444 D 365044 CDS YP_980940.1 121603611 4688248 746283..747023 1 NC_008781.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 747023 4688248 Pnap_0700 Polaromonas naphthalenivorans CJ2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_980940.1 746283 D 365044 CDS YP_980941.1 121603612 4688293 747031..747810 1 NC_008781.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 747810 4688293 Pnap_0701 Polaromonas naphthalenivorans CJ2 imidazole glycerol phosphate synthase subunit HisF YP_980941.1 747031 D 365044 CDS YP_980942.1 121603613 4688432 747944..748333 1 NC_008781.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 748333 hisI 4688432 hisI Polaromonas naphthalenivorans CJ2 phosphoribosyl-AMP cyclohydrolase YP_980942.1 747944 D 365044 CDS YP_980943.1 121603614 4687461 748340..748729 1 NC_008781.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 748729 hisE 4687461 hisE Polaromonas naphthalenivorans CJ2 phosphoribosyl-ATP pyrophosphatase YP_980943.1 748340 D 365044 CDS YP_980944.1 121603615 4688094 748744..749124 1 NC_008781.1 KEGG: rfr:Rfer_2954 putative transmembrane protein; hypothetical protein 749124 4688094 Pnap_0704 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980944.1 748744 D 365044 CDS YP_980945.1 121603616 4688027 749121..749480 1 NC_008781.1 PFAM: histidine triad (HIT) protein; KEGG: pol:Bpro_0813 histidine triad (HIT) protein; histidine triad (HIT) protein 749480 4688027 Pnap_0705 Polaromonas naphthalenivorans CJ2 histidine triad (HIT) protein YP_980945.1 749121 D 365044 CDS YP_980946.1 121603617 4688018 749626..749880 1 NC_008781.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 749880 tatA 4688018 tatA Polaromonas naphthalenivorans CJ2 twin arginine translocase protein A YP_980946.1 749626 D 365044 CDS YP_980947.1 121603618 4687962 749930..750397 1 NC_008781.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pol:Bpro_0815 twin-arginine translocation protein TatB; sec-independent translocase 750397 tatB 4687962 tatB Polaromonas naphthalenivorans CJ2 sec-independent translocase YP_980947.1 749930 D 365044 CDS YP_980948.1 121603619 4687521 750462..751265 1 NC_008781.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pol:Bpro_0816 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 751265 4687521 Pnap_0708 Polaromonas naphthalenivorans CJ2 Sec-independent protein translocase subunit TatC YP_980948.1 750462 D 365044 CDS YP_980949.1 121603620 4688126 complement(751379..752545) 1 NC_008781.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pol:Bpro_0817 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap 752545 4688126 Pnap_0709 Polaromonas naphthalenivorans CJ2 peptidase S1 and S6, chymotrypsin/Hap YP_980949.1 751379 R 365044 CDS YP_980950.1 121603621 4687563 752740..753504 1 NC_008781.1 PFAM: protein of unknown function DUF34; KEGG: pol:Bpro_0818 protein of unknown function DUF34; hypothetical protein 753504 4687563 Pnap_0710 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980950.1 752740 D 365044 CDS YP_980951.1 121603622 4687862 753501..754544 1 NC_008781.1 KEGG: pol:Bpro_0819 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 754544 4687862 Pnap_0711 Polaromonas naphthalenivorans CJ2 4-hydroxythreonine-4-phosphate dehydrogenase YP_980951.1 753501 D 365044 CDS YP_980952.1 121603623 4689194 complement(754552..754980) 1 NC_008781.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 754980 mscL 4689194 mscL Polaromonas naphthalenivorans CJ2 large-conductance mechanosensitive channel YP_980952.1 754552 R 365044 CDS YP_980953.1 121603624 4687989 755242..755868 1 NC_008781.1 KEGG: pol:Bpro_0821 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 755868 4687989 Pnap_0713 Polaromonas naphthalenivorans CJ2 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_980953.1 755242 D 365044 CDS YP_980954.1 121603625 4686600 755976..757385 1 NC_008781.1 PFAM: Cytochrome b/b6, N-terminal domain; KEGG: pol:Bpro_0822 cytochrome b/b6-like; cytochrome b/b6 domain-containing protein 757385 4686600 Pnap_0714 Polaromonas naphthalenivorans CJ2 cytochrome b/b6 domain-containing protein YP_980954.1 755976 D 365044 CDS YP_980955.1 121603626 4686209 757402..758157 1 NC_008781.1 PFAM: cytochrome c1; KEGG: pol:Bpro_0823 cytochrome c1; cytochrome c1 758157 4686209 Pnap_0715 Polaromonas naphthalenivorans CJ2 cytochrome c1 YP_980955.1 757402 D 365044 CDS YP_980956.1 121603627 4686431 758277..758888 1 NC_008781.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_0824 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 758888 4686431 Pnap_0716 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_980956.1 758277 D 365044 CDS YP_980957.1 121603628 4686273 758931..759497 1 NC_008781.1 PFAM: Stringent starvation protein B; KEGG: pol:Bpro_0825 stringent starvation protein B; ClpXP protease specificity-enhancing factor 759497 4686273 Pnap_0717 Polaromonas naphthalenivorans CJ2 ClpXP protease specificity-enhancing factor YP_980957.1 758931 D 365044 CDS YP_980958.1 121603629 4689056 complement(759693..760061) 1 NC_008781.1 KEGG: pol:Bpro_0826 hypothetical protein; hypothetical protein 760061 4689056 Pnap_0718 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980958.1 759693 R 365044 CDS YP_980959.1 121603630 4689103 complement(760153..760896) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2207 ABC efflux transporter, ATP-binding protein; ABC transporter-like protein 760896 4689103 Pnap_0719 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_980959.1 760153 R 365044 CDS YP_980960.1 121603631 4689516 complement(760930..762063) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4137 uncharacterized protein UPF0065; hypothetical protein 762063 4689516 Pnap_0720 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980960.1 760930 R 365044 CDS YP_980961.1 121603632 4689290 762135..763169 1 NC_008781.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: bja:blr6189 hypothetical protein; hypothetical protein 763169 4689290 Pnap_0721 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980961.1 762135 D 365044 CDS YP_980962.1 121603633 4687833 763169..764377 1 NC_008781.1 KEGG: pfl:PFL_2209 hypothetical protein; hypothetical protein 764377 4687833 Pnap_0722 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980962.1 763169 D 365044 CDS YP_980963.1 121603634 4687140 764359..765177 1 NC_008781.1 PFAM: ABC-2 type transporter; KEGG: sil:SPO1510 efflux ABC transporter, permease protein; ABC transporter 765177 4687140 Pnap_0723 Polaromonas naphthalenivorans CJ2 ABC transporter YP_980963.1 764359 D 365044 CDS YP_980964.1 121603635 4686387 765221..766036 1 NC_008781.1 KEGG: dar:Daro_1025 hypothetical protein; hypothetical protein 766036 4686387 Pnap_0724 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980964.1 765221 D 365044 CDS YP_980965.1 121603636 4686859 766033..767037 1 NC_008781.1 PFAM: beta-lactamase domain protein; KEGG: pfl:PFL_2220 hydrolase, putative; beta-lactamase domain-containing protein 767037 4686859 Pnap_0725 Polaromonas naphthalenivorans CJ2 beta-lactamase domain-containing protein YP_980965.1 766033 D 365044 CDS YP_980966.1 121603637 4687708 767334..768983 1 NC_008781.1 PFAM: Pyrrolo-quinoline quinone; KEGG: reu:Reut_A1784 pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 768983 4687708 Pnap_0726 Polaromonas naphthalenivorans CJ2 Pyrrolo-quinoline quinone YP_980966.1 767334 D 365044 CDS YP_980967.1 121603638 4687853 768989..769234 1 NC_008781.1 hypothetical protein 769234 4687853 Pnap_0727 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980967.1 768989 D 365044 CDS YP_980968.1 121603639 4687287 769231..769563 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: mfa:Mfla_2196 cytochrome c, class I; class I cytochrome c 769563 4687287 Pnap_0728 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_980968.1 769231 D 365044 CDS YP_980969.1 121603640 4687856 complement(769612..770754) 1 NC_008781.1 TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; KEGG: bxe:Bxe_B2470 pyrroloquinoline quinone synthesis E; pyrroloquinoline quinone biosynthesis protein PqqE 770754 4687856 Pnap_0729 Polaromonas naphthalenivorans CJ2 pyrroloquinoline quinone biosynthesis protein PqqE YP_980969.1 769612 R 365044 CDS YP_980970.1 121603641 4690227 complement(770738..771055) 1 NC_008781.1 PFAM: coenzyme PQQ synthesis D; KEGG: bxe:Bxe_B2469 pyrroloquinoline quinone synthesis D; coenzyme PQQ biosynthesis protein PqqD 771055 4690227 Pnap_0730 Polaromonas naphthalenivorans CJ2 coenzyme PQQ biosynthesis protein PqqD YP_980970.1 770738 R 365044 CDS YP_980971.1 121603642 4686919 complement(771052..771783) 1 NC_008781.1 Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 771783 4686919 Pnap_0731 Polaromonas naphthalenivorans CJ2 pyrroloquinoline quinone biosynthesis protein PqqC YP_980971.1 771052 R 365044 CDS YP_980972.1 121603643 4687758 complement(771798..772715) 1 NC_008781.1 possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 772715 4687758 Pnap_0732 Polaromonas naphthalenivorans CJ2 pyrroloquinoline quinone biosynthesis protein PqqB YP_980972.1 771798 R 365044 CDS YP_980973.1 121603644 4689541 772975..774072 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_B2466 putative proline iminopeptidase; alpha/beta hydrolase fold protein 774072 4689541 Pnap_0733 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold protein YP_980973.1 772975 D 365044 CDS YP_980974.1 121603645 4687596 774127..775158 1 NC_008781.1 PFAM: beta-lactamase domain protein; KEGG: rsp:RSP_2589 hypothetical protein; beta-lactamase domain-containing protein 775158 4687596 Pnap_0734 Polaromonas naphthalenivorans CJ2 beta-lactamase domain-containing protein YP_980974.1 774127 D 365044 CDS YP_980975.1 121603646 4686432 complement(775135..777186) 1 NC_008781.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: rme:Rmet_5127 sigma54 specific transcriptional regulator with GAF sensor, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 777186 4686432 Pnap_0735 Polaromonas naphthalenivorans CJ2 Fis family GAF modulated sigma54 specific transcriptional regulator YP_980975.1 775135 R 365044 CDS YP_980976.1 121603647 4686557 777567..778088 1 NC_008781.1 KEGG: reu:Reut_A1777 cytochrome c-type protein; cytochrome c-type protein 778088 4686557 Pnap_0736 Polaromonas naphthalenivorans CJ2 cytochrome c-type protein YP_980976.1 777567 D 365044 CDS YP_980977.1 121603648 4688408 778165..779070 1 NC_008781.1 SMART: extracellular solute-binding protein, family 3; KEGG: reu:Reut_A1776 extracellular solute-binding protein, family 3; extracellular solute-binding protein 779070 4688408 Pnap_0737 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_980977.1 778165 D 365044 CDS YP_980978.1 121603649 4688504 779448..782213 1 NC_008781.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 782213 4688504 Pnap_0738 Polaromonas naphthalenivorans CJ2 preprotein translocase subunit SecA YP_980978.1 779448 D 365044 CDS YP_980979.1 121603650 4689605 782283..783524 1 NC_008781.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 783524 argJ 4689605 argJ Polaromonas naphthalenivorans CJ2 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_980979.1 782283 D 365044 CDS YP_980980.1 121603651 4689139 783543..784424 1 NC_008781.1 PFAM: protein of unknown function DUF815; KEGG: pol:Bpro_0830 protein of unknown function DUF815; hypothetical protein 784424 4689139 Pnap_0740 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980980.1 783543 D 365044 CDS YP_980981.1 121603652 4688659 784433..784888 1 NC_008781.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_0831 NUDIX hydrolase; NUDIX hydrolase 784888 4688659 Pnap_0741 Polaromonas naphthalenivorans CJ2 NUDIX hydrolase YP_980981.1 784433 D 365044 CDS YP_980982.1 121603653 4688747 complement(784911..787361) 1 NC_008781.1 PFAM: Patatin; KEGG: pol:Bpro_2089 patatin; patatin 787361 4688747 Pnap_0742 Polaromonas naphthalenivorans CJ2 patatin YP_980982.1 784911 R 365044 CDS YP_980983.1 121603654 4687871 787586..788905 1 NC_008781.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cvi:CV4242 hypothetical protein; hypothetical protein 788905 4687871 Pnap_0743 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980983.1 787586 D 365044 CDS YP_980984.1 121603655 4687418 complement(788918..789583) 1 NC_008781.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0832 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 789583 4687418 Pnap_0744 Polaromonas naphthalenivorans CJ2 lytic transglycosylase catalytic subunit YP_980984.1 788918 R 365044 CDS YP_980985.1 121603656 4686163 complement(789611..791356) 1 NC_008781.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 791356 4686163 Pnap_0745 Polaromonas naphthalenivorans CJ2 prolyl-tRNA synthetase YP_980985.1 789611 R 365044 CDS YP_980986.1 121603657 4686584 791460..792167 1 NC_008781.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 792167 4686584 Pnap_0746 Polaromonas naphthalenivorans CJ2 dinucleoside polyphosphate hydrolase YP_980986.1 791460 D 365044 CDS YP_980987.1 121603658 4687398 792164..792676 1 NC_008781.1 KEGG: pol:Bpro_0835 hypothetical protein; hypothetical protein 792676 4687398 Pnap_0747 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980987.1 792164 D 365044 CDS YP_980988.1 121603659 4688725 complement(792718..793854) 1 NC_008781.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 793854 4688725 Pnap_0748 Polaromonas naphthalenivorans CJ2 gamma-glutamyl kinase YP_980988.1 792718 R 365044 CDS YP_980989.1 121603660 4689261 complement(793955..795049) 1 NC_008781.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 795049 obgE 4689261 obgE Polaromonas naphthalenivorans CJ2 GTPase ObgE YP_980989.1 793955 R 365044 CDS YP_980990.1 121603661 4689912 complement(795146..795403) 1 NC_008781.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 795403 rpmA 4689912 rpmA Polaromonas naphthalenivorans CJ2 50S ribosomal protein L27 YP_980990.1 795146 R 365044 CDS YP_980991.1 121603662 4687358 complement(795431..795742) 1 NC_008781.1 PFAM: ribosomal protein L21; KEGG: pol:Bpro_0839 ribosomal protein L21; 50S ribosomal protein L21 795742 rplU 4687358 rplU Polaromonas naphthalenivorans CJ2 50S ribosomal protein L21 YP_980991.1 795431 R 365044 CDS YP_980992.1 121603663 4687385 795910..796893 1 NC_008781.1 PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_0840 trans-hexaprenyltranstransferase; trans-hexaprenyltranstransferase 796893 4687385 Pnap_0752 Polaromonas naphthalenivorans CJ2 trans-hexaprenyltranstransferase YP_980992.1 795910 D 365044 CDS YP_980993.1 121603664 4688086 complement(797060..797686) 1 NC_008781.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rfr:Rfer_2496 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 797686 4688086 Pnap_0753 Polaromonas naphthalenivorans CJ2 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_980993.1 797060 R 365044 CDS YP_980994.1 121603665 4687902 complement(797733..798971) 1 NC_008781.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: rfr:Rfer_0544 general secretion pathway protein F; general secretion pathway protein F 798971 4687902 Pnap_0754 Polaromonas naphthalenivorans CJ2 general secretion pathway protein F YP_980994.1 797733 R 365044 CDS YP_980995.1 121603666 4689504 complement(798974..800383) 1 NC_008781.1 KEGG: rfr:Rfer_0543 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 800383 4689504 Pnap_0755 Polaromonas naphthalenivorans CJ2 general secretory pathway protein E YP_980995.1 798974 R 365044 CDS YP_980996.1 121603667 4689724 complement(800387..802603) 1 NC_008781.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pol:Bpro_1329 type II and III secretion system protein; general secretion pathway protein D 802603 4689724 Pnap_0756 Polaromonas naphthalenivorans CJ2 general secretion pathway protein D YP_980996.1 800387 R 365044 CDS YP_980997.1 121603668 4686851 complement(802610..803413) 1 NC_008781.1 KEGG: rfr:Rfer_0541 putative general secretory pathway N transmembrane protein; putative general secretory pathway N transmembrane protein 803413 4686851 Pnap_0757 Polaromonas naphthalenivorans CJ2 putative general secretory pathway N transmembrane protein YP_980997.1 802610 R 365044 CDS YP_980998.1 121603669 4687048 complement(803422..803925) 1 NC_008781.1 KEGG: pol:Bpro_1327 hypothetical protein; hypothetical protein 803925 4687048 Pnap_0758 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980998.1 803422 R 365044 CDS YP_980999.1 121603670 4686465 complement(803922..805157) 1 NC_008781.1 KEGG: rfr:Rfer_0539 hypothetical protein; hypothetical protein 805157 4686465 Pnap_0759 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_980999.1 803922 R 365044 CDS YP_981000.1 121603671 4689929 complement(805178..806209) 1 NC_008781.1 PFAM: General secretion pathway protein K; KEGG: pol:Bpro_1325 general secretion pathway protein K; general secretion pathway protein K 806209 4689929 Pnap_0760 Polaromonas naphthalenivorans CJ2 general secretion pathway protein K YP_981000.1 805178 R 365044 CDS YP_981001.1 121603672 4689355 complement(806206..806922) 1 NC_008781.1 KEGG: rfr:Rfer_0537 methylation; methylation 806922 4689355 Pnap_0761 Polaromonas naphthalenivorans CJ2 methylation YP_981001.1 806206 R 365044 CDS YP_981002.1 121603673 4688312 complement(806925..807302) 1 NC_008781.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: pol:Bpro_1323 general secretion pathway protein I; general secretion pathway protein I 807302 4688312 Pnap_0762 Polaromonas naphthalenivorans CJ2 general secretion pathway protein I YP_981002.1 806925 R 365044 CDS YP_981003.1 121603674 4686369 complement(807302..807868) 1 NC_008781.1 TIGRFAM: general secretion pathway protein H; KEGG: rfr:Rfer_0535 general secretion pathway protein H; general secretion pathway protein H 807868 4686369 Pnap_0763 Polaromonas naphthalenivorans CJ2 general secretion pathway protein H YP_981003.1 807302 R 365044 CDS YP_981004.1 121603675 4686510 complement(807843..808262) 1 NC_008781.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rfr:Rfer_0534 general secretion pathway protein G; general secretion pathway protein G 808262 4686510 Pnap_0764 Polaromonas naphthalenivorans CJ2 general secretion pathway protein G YP_981004.1 807843 R 365044 CDS YP_981005.1 121603676 4686653 808319..808765 1 NC_008781.1 KEGG: rfr:Rfer_0533 hypothetical protein; hypothetical protein 808765 4686653 Pnap_0765 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981005.1 808319 D 365044 CDS YP_981006.1 121603677 4687119 808992..810728 1 NC_008781.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: pol:Bpro_0841 type II secretion system protein E; type IV-A pilus assembly ATPase PilB 810728 4687119 Pnap_0766 Polaromonas naphthalenivorans CJ2 type IV-A pilus assembly ATPase PilB YP_981006.1 808992 D 365044 CDS YP_981007.1 121603678 4689223 810814..812031 1 NC_008781.1 PFAM: type II secretion system protein; KEGG: pol:Bpro_0842 type II secretion system protein; type II secretion system protein 812031 4689223 Pnap_0767 Polaromonas naphthalenivorans CJ2 type II secretion system protein YP_981007.1 810814 D 365044 CDS YP_981008.1 121603679 4686420 812031..812882 1 NC_008781.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: pol:Bpro_0843 prepilin peptidase; prepilin peptidase 812882 4686420 Pnap_0768 Polaromonas naphthalenivorans CJ2 prepilin peptidase YP_981008.1 812031 D 365044 CDS YP_981009.1 121603680 4687026 812887..813498 1 NC_008781.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 813498 coaE 4687026 coaE Polaromonas naphthalenivorans CJ2 dephospho-CoA kinase YP_981009.1 812887 D 365044 CDS YP_981010.1 121603681 4687007 813538..814293 1 NC_008781.1 PFAM: protein of unknown function DUF1342; KEGG: pol:Bpro_0845 protein of unknown function DUF1342; hypothetical protein 814293 4687007 Pnap_0770 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981010.1 813538 D 365044 CDS YP_981011.1 121603682 4687378 814352..814558 1 NC_008781.1 PFAM: protein of unknown function DUF329; KEGG: pol:Bpro_0846 protein of unknown function DUF329; hypothetical protein 814558 4687378 Pnap_0771 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981011.1 814352 D 365044 CDS YP_981012.1 121603683 4687615 814636..814896 1 NC_008781.1 KEGG: pol:Bpro_0847 hypothetical protein; hypothetical protein 814896 4687615 Pnap_0772 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981012.1 814636 D 365044 CDS YP_981013.1 121603684 4688526 complement(814938..815267) 1 NC_008781.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: pol:Bpro_0848 glutaredoxin-related protein; glutaredoxin-like protein 815267 4688526 Pnap_0773 Polaromonas naphthalenivorans CJ2 glutaredoxin-like protein YP_981013.1 814938 R 365044 CDS YP_981014.1 121603685 4689086 complement(815423..816274) 1 NC_008781.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_0849 modification methylase, HemK family; HemK family modification methylase 816274 4689086 Pnap_0774 Polaromonas naphthalenivorans CJ2 HemK family modification methylase YP_981014.1 815423 R 365044 CDS YP_981015.1 121603686 4689933 complement(816371..817492) 1 NC_008781.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 817492 prfA 4689933 prfA Polaromonas naphthalenivorans CJ2 peptide chain release factor 1 YP_981015.1 816371 R 365044 CDS YP_981016.1 121603687 4689755 complement(817590..818879) 1 NC_008781.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 818879 hemA 4689755 hemA Polaromonas naphthalenivorans CJ2 glutamyl-tRNA reductase YP_981016.1 817590 R 365044 CDS YP_981017.1 121603688 4689827 818991..819281 1 NC_008781.1 KEGG: pol:Bpro_0852 hypothetical protein; hypothetical protein 819281 4689827 Pnap_0777 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981017.1 818991 D 365044 CDS YP_981018.1 121603689 4689291 819593..823390 1 NC_008781.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: pol:Bpro_0858 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 823390 4689291 Pnap_0778 Polaromonas naphthalenivorans CJ2 FAD linked oxidase domain-containing protein YP_981018.1 819593 D 365044 CDS YP_981019.1 121603690 4689280 823393..823821 1 NC_008781.1 PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1289 histidine triad (HIT) protein; histidine triad (HIT) protein 823821 4689280 Pnap_0779 Polaromonas naphthalenivorans CJ2 histidine triad (HIT) protein YP_981019.1 823393 D 365044 CDS YP_981020.1 121603691 4689214 823860..824273 1 NC_008781.1 PFAM: protein of unknown function DUF971; KEGG: pol:Bpro_0859 protein of unknown function DUF971; hypothetical protein 824273 4689214 Pnap_0780 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981020.1 823860 D 365044 CDS YP_981021.1 121603692 4688590 824284..825015 1 NC_008781.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_0860 ubiquinone/menaquinone biosynthesis methyltransferases; ubiquinone/menaquinone biosynthesis methyltransferase 825015 4688590 Pnap_0781 Polaromonas naphthalenivorans CJ2 ubiquinone/menaquinone biosynthesis methyltransferase YP_981021.1 824284 D 365044 CDS YP_981022.1 121603693 4687896 825074..826066 1 NC_008781.1 PFAM: import inner membrane translocase, subunit Tim44; KEGG: pol:Bpro_0861 import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 826066 4687896 Pnap_0782 Polaromonas naphthalenivorans CJ2 import inner membrane translocase subunit Tim44 YP_981022.1 825074 D 365044 CDS YP_981023.1 121603694 4687859 826157..826852 1 NC_008781.1 KEGG: pol:Bpro_0862 hypothetical protein; hypothetical protein 826852 4687859 Pnap_0783 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981023.1 826157 D 365044 CDS YP_981024.1 121603695 4687846 826849..828402 1 NC_008781.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB 828402 ubiB 4687846 ubiB Polaromonas naphthalenivorans CJ2 putative ubiquinone biosynthesis protein UbiB YP_981024.1 826849 D 365044 CDS YP_981025.1 121603696 4687776 828532..828894 1 NC_008781.1 TIGRFAM: putative regulatory protein, FmdB family; KEGG: pol:Bpro_0864 hypothetical protein; FmdB family regulatory protein 828894 4687776 Pnap_0785 Polaromonas naphthalenivorans CJ2 FmdB family regulatory protein YP_981025.1 828532 D 365044 CDS YP_981026.1 121603697 4687778 828891..829523 1 NC_008781.1 PFAM: protein of unknown function DUF502; KEGG: pol:Bpro_0865 protein of unknown function DUF502; hypothetical protein 829523 4687778 Pnap_0786 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981026.1 828891 D 365044 CDS YP_981027.1 121603698 4687956 829561..831378 1 NC_008781.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 831378 aspS 4687956 aspS Polaromonas naphthalenivorans CJ2 aspartyl-tRNA synthetase YP_981027.1 829561 D 365044 CDS YP_981028.1 121603699 4689210 complement(831458..831901) 1 NC_008781.1 PFAM: UspA domain protein; KEGG: pol:Bpro_4308 UspA; UspA domain-containing protein 831901 4689210 Pnap_0788 Polaromonas naphthalenivorans CJ2 UspA domain-containing protein YP_981028.1 831458 R 365044 CDS YP_981029.1 121603700 4686377 832296..833117 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_4297 PAS/PAC sensor signal transduction histidine kinase; histidine kinase 833117 4686377 Pnap_0789 Polaromonas naphthalenivorans CJ2 histidine kinase YP_981029.1 832296 D 365044 CDS YP_981030.1 121603701 4687442 833114..833758 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_4296 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 833758 4687442 Pnap_0790 Polaromonas naphthalenivorans CJ2 two component LuxR family transcriptional regulator YP_981030.1 833114 D 365044 CDS YP_981031.1 121603702 4687970 833945..834340 1 NC_008781.1 PFAM: response regulator receiver; KEGG: pol:Bpro_1169 response regulator receiver domain protein (CheY-like); response regulator receiver protein 834340 4687970 Pnap_0791 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_981031.1 833945 D 365044 CDS YP_981032.1 121603703 4687773 834376..835164 1 NC_008781.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pol:Bpro_4294 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 835164 4687773 Pnap_0792 Polaromonas naphthalenivorans CJ2 CRP/FNR family transcriptional regulator YP_981032.1 834376 D 365044 CDS YP_981033.1 121603704 4687897 complement(835187..835780) 1 NC_008781.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pol:Bpro_1192 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 835780 4687897 Pnap_0793 Polaromonas naphthalenivorans CJ2 NAD(P)H dehydrogenase (quinone) YP_981033.1 835187 R 365044 CDS YP_981034.1 121603705 4688864 complement(835877..836344) 1 NC_008781.1 KEGG: pol:Bpro_1203 hypothetical protein; hypothetical protein 836344 4688864 Pnap_0794 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981034.1 835877 R 365044 CDS YP_981035.1 121603706 4687678 complement(836871..837173) 1 NC_008781.1 hypothetical protein 837173 4687678 Pnap_0795 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981035.1 836871 R 365044 CDS YP_981036.1 121603707 4690154 837476..839332 1 NC_008781.1 catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 839332 4690154 Pnap_0796 Polaromonas naphthalenivorans CJ2 feruloyl-CoA synthase YP_981036.1 837476 D 365044 CDS YP_981037.1 121603708 4689033 839349..840599 1 NC_008781.1 KEGG: pol:Bpro_3113 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 840599 4689033 Pnap_0797 Polaromonas naphthalenivorans CJ2 acetyl-CoA acetyltransferase YP_981037.1 839349 D 365044 CDS YP_981038.1 121603709 4688172 840814..841578 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR; KEGG: rfr:Rfer_0271 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 841578 4688172 Pnap_0798 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_981038.1 840814 D 365044 CDS YP_981039.1 121603710 4686761 841598..842017 1 NC_008781.1 PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0270 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 842017 4686761 Pnap_0799 Polaromonas naphthalenivorans CJ2 4-hydroxybenzoyl-CoA thioesterase YP_981039.1 841598 D 365044 CDS YP_981040.1 121603711 4687047 842059..843192 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0269 extracellular ligand-binding receptor; extracellular ligand-binding receptor 843192 4687047 Pnap_0800 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_981040.1 842059 D 365044 CDS YP_981041.1 121603712 4687211 843281..844321 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0268 inner-membrane translocator; inner-membrane translocator 844321 4687211 Pnap_0801 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_981041.1 843281 D 365044 CDS YP_981042.1 121603713 4690037 844323..846089 1 NC_008781.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0267 ABC transporter related; ABC transporter-like protein 846089 4690037 Pnap_0802 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981042.1 844323 D 365044 CDS YP_981043.1 121603714 4688879 846101..846859 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0266 ABC transporter related; ABC transporter-like protein 846859 4688879 Pnap_0803 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981043.1 846101 D 365044 CDS YP_981044.1 121603715 4690150 847025..848146 1 NC_008781.1 KEGG: pol:Bpro_3117 porin, gram-negative type; porin 848146 4690150 Pnap_0804 Polaromonas naphthalenivorans CJ2 porin YP_981044.1 847025 D 365044 CDS YP_981045.1 121603716 4686657 848171..849157 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0198 twin-arginine translocation pathway signal; hypothetical protein 849157 4686657 Pnap_0805 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981045.1 848171 D 365044 CDS YP_981046.1 121603717 4686125 849274..850965 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3118 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 850965 4686125 Pnap_0806 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_981046.1 849274 D 365044 CDS YP_981047.1 121603718 4689469 850962..851555 1 NC_008781.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3119 transcriptional regulator, MarR family; MarR family transcriptional regulator 851555 4689469 Pnap_0807 Polaromonas naphthalenivorans CJ2 MarR family transcriptional regulator YP_981047.1 850962 D 365044 CDS YP_981048.1 121603719 4687469 851709..852260 1 NC_008781.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_1332 GreA/GreB family elongation factor; transcription elongation factor GreB 852260 4687469 Pnap_0808 Polaromonas naphthalenivorans CJ2 transcription elongation factor GreB YP_981048.1 851709 D 365044 CDS YP_981049.1 121603720 4686055 complement(852358..854595) 1 NC_008781.1 KEGG: pol:Bpro_1333 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 854595 4686055 Pnap_0809 Polaromonas naphthalenivorans CJ2 (p)ppGpp synthetase I SpoT/RelA YP_981049.1 852358 R 365044 CDS YP_981050.1 121603721 4689547 complement(854713..854916) 1 NC_008781.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 854916 4689547 Pnap_0810 Polaromonas naphthalenivorans CJ2 DNA-directed RNA polymerase subunit omega YP_981050.1 854713 R 365044 CDS YP_981051.1 121603722 4686408 complement(854942..855562) 1 NC_008781.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 855562 gmk 4686408 gmk Polaromonas naphthalenivorans CJ2 guanylate kinase YP_981051.1 854942 R 365044 CDS YP_981052.1 121603723 4686403 complement(855615..856532) 1 NC_008781.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: pol:Bpro_1336 conserved hypothetical protein 255; hypothetical protein 856532 4686403 Pnap_0812 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981052.1 855615 R 365044 CDS YP_981053.1 121603724 4686419 856598..857605 1 NC_008781.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pol:Bpro_1337 serine/threonine protein kinase; protein kinase 857605 4686419 Pnap_0813 Polaromonas naphthalenivorans CJ2 protein kinase YP_981053.1 856598 D 365044 CDS YP_981054.1 121603725 4686426 857602..858501 1 NC_008781.1 PFAM: protein phosphatase 2C domain protein; KEGG: pol:Bpro_1338 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein 858501 4686426 Pnap_0814 Polaromonas naphthalenivorans CJ2 protein phosphatase 2C domain-containing protein YP_981054.1 857602 D 365044 CDS YP_981055.1 121603726 4686414 858598..859206 1 NC_008781.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 859206 4686414 Pnap_0815 Polaromonas naphthalenivorans CJ2 putative deoxyribonucleotide triphosphate pyrophosphatase YP_981055.1 858598 D 365044 CDS YP_981056.1 121603727 4686413 859225..860415 1 NC_008781.1 KEGG: pol:Bpro_1341 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 860415 4686413 Pnap_0816 Polaromonas naphthalenivorans CJ2 putative oxygen-independent coproporphyrinogen III oxidase YP_981056.1 859225 D 365044 CDS YP_981057.1 121603728 4686448 860439..860696 1 NC_008781.1 KEGG: pol:Bpro_1342 hypothetical protein; hypothetical protein 860696 4686448 Pnap_0817 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981057.1 860439 D 365044 CDS YP_981058.1 121603729 4686437 complement(860973..863096) 1 NC_008781.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 863096 metG 4686437 metG Polaromonas naphthalenivorans CJ2 methionyl-tRNA synthetase YP_981058.1 860973 R 365044 CDS YP_981059.1 121603730 4686351 863303..865672 1 NC_008781.1 KEGG: pol:Bpro_0925 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 865672 4686351 Pnap_0819 Polaromonas naphthalenivorans CJ2 ATP-dependent protease La YP_981059.1 863303 D 365044 CDS YP_981060.1 121603731 4690106 865711..867438 1 NC_008781.1 PFAM: PHP C-terminal domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding, class 1; KEGG: rfr:Rfer_0829 PHP-like; phosphotransferase domain-containing protein 867438 4690106 Pnap_0820 Polaromonas naphthalenivorans CJ2 phosphotransferase domain-containing protein YP_981060.1 865711 D 365044 CDS YP_981061.1 121603732 4686386 867529..868074 1 NC_008781.1 TIGRFAM: ribosomal subunit interface protein; PFAM: Cold-shock protein, DNA-binding; KEGG: rfr:Rfer_3849 putative sigma 54 modulation protein/ribosomal protein S30EA; putative sigma 54 modulation protein/ribosomal protein S30EA 868074 4686386 Pnap_0821 Polaromonas naphthalenivorans CJ2 putative sigma 54 modulation protein/ribosomal protein S30EA YP_981061.1 867529 D 365044 CDS YP_981062.1 121603733 4686458 868226..869317 1 NC_008781.1 PFAM: protein of unknown function DUF59; KEGG: pol:Bpro_0931 putative iron sulfur binding protein; hypothetical protein 869317 4686458 Pnap_0822 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981062.1 868226 D 365044 CDS YP_981063.1 121603734 4686468 869369..870319 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rsp:RSP_1077 transcriptional regulator, LysR family; LysR family transcriptional regulator 870319 4686468 Pnap_0823 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981063.1 869369 D 365044 CDS YP_981064.1 121603735 4686496 870396..871472 1 NC_008781.1 hypothetical protein 871472 4686496 Pnap_0824 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981064.1 870396 D 365044 CDS YP_981065.1 121603736 4686530 871599..873401 1 NC_008781.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 873401 4686530 Pnap_0825 Polaromonas naphthalenivorans CJ2 NADH dehydrogenase (quinone) YP_981065.1 871599 D 365044 CDS YP_981066.1 121603737 4686564 876417..877262 1 NC_008781.1 KEGG: bpm:BURPS1710b_A1716 hypothetical protein; hypothetical protein 877262 4686564 Pnap_0828 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981066.1 876417 D 365044 CDS YP_981067.1 121603738 4686574 complement(877408..877905) 1 NC_008781.1 PFAM: NLP/P60 protein; KEGG: dar:Daro_3747 NLP/P60; NLP/P60 protein 877905 4686574 Pnap_0829 Polaromonas naphthalenivorans CJ2 NLP/P60 protein YP_981067.1 877408 R 365044 CDS YP_981068.1 121603739 4686579 878133..878663 1 NC_008781.1 KEGG: pol:Bpro_0932 hypothetical protein; hypothetical protein 878663 4686579 Pnap_0830 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981068.1 878133 D 365044 CDS YP_981069.1 121603740 4686604 878656..879369 1 NC_008781.1 KEGG: pol:Bpro_0933 hypothetical protein; hypothetical protein 879369 4686604 Pnap_0831 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981069.1 878656 D 365044 CDS YP_981070.1 121603741 4686580 879296..881428 1 NC_008781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3264 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 881428 4686580 Pnap_0832 Polaromonas naphthalenivorans CJ2 4Fe-4S ferredoxin YP_981070.1 879296 D 365044 CDS YP_981071.1 121603742 4687338 881444..882058 1 NC_008781.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: pol:Bpro_0935 cytoplasmic chaperone TorD; cytoplasmic chaperone TorD family protein 882058 4687338 Pnap_0833 Polaromonas naphthalenivorans CJ2 cytoplasmic chaperone TorD family protein YP_981071.1 881444 D 365044 CDS YP_981072.1 121603743 4686615 882477..885452 1 NC_008781.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pol:Bpro_0937 twin-arginine translocation pathway signal; molybdopterin oxidoreductase 885452 4686615 Pnap_0834 Polaromonas naphthalenivorans CJ2 molybdopterin oxidoreductase YP_981072.1 882477 D 365044 CDS YP_981073.1 121603744 4686664 885457..886077 1 NC_008781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_0938 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 886077 4686664 Pnap_0835 Polaromonas naphthalenivorans CJ2 4Fe-4S ferredoxin YP_981073.1 885457 D 365044 CDS YP_981074.1 121603745 4686676 886074..886301 1 NC_008781.1 KEGG: pol:Bpro_0939 putative lipoprotein; putative lipoprotein 886301 4686676 Pnap_0836 Polaromonas naphthalenivorans CJ2 putative lipoprotein YP_981074.1 886074 D 365044 CDS YP_981075.1 121603746 4687270 886318..887490 1 NC_008781.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: pol:Bpro_0940 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 887490 4687270 Pnap_0837 Polaromonas naphthalenivorans CJ2 formate dehydrogenase subunit gamma YP_981075.1 886318 D 365044 CDS YP_981076.1 121603747 4687362 887513..887908 1 NC_008781.1 KEGG: pol:Bpro_0941 hypothetical protein; hypothetical protein 887908 4687362 Pnap_0838 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981076.1 887513 D 365044 CDS YP_981077.1 121603748 4687324 887975..888847 1 NC_008781.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: pol:Bpro_0942 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD 888847 4687324 Pnap_0839 Polaromonas naphthalenivorans CJ2 formate dehydrogenase subunit FdhD YP_981077.1 887975 D 365044 CDS YP_981078.1 121603749 4687427 complement(888926..889900) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1763 hypothetical protein; hypothetical protein 889900 4687427 Pnap_0840 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981078.1 888926 R 365044 CDS YP_981079.1 121603750 4687382 complement(889959..890723) 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_A1762 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 890723 4687382 Pnap_0841 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_981079.1 889959 R 365044 CDS YP_981080.1 121603751 4687355 complement(890720..891457) 1 NC_008781.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rme:Rmet_4907 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 891457 4687355 Pnap_0842 Polaromonas naphthalenivorans CJ2 fumarylacetoacetate (FAA) hydrolase YP_981080.1 890720 R 365044 CDS YP_981081.1 121603752 4687407 complement(891454..892428) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2294 uncharacterized protein UPF0065; hypothetical protein 892428 4687407 Pnap_0843 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981081.1 891454 R 365044 CDS YP_981082.1 121603753 4687429 complement(892486..893439) 1 NC_008781.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: reu:Reut_A1761 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 893439 4687429 Pnap_0844 Polaromonas naphthalenivorans CJ2 D-isomer specific 2-hydroxyacid dehydrogenase YP_981082.1 892486 R 365044 CDS YP_981083.1 121603754 4687432 893581..894753 1 NC_008781.1 PFAM: Citrate synthase; KEGG: reu:Reut_A1760 citrate synthase; citrate synthase 894753 4687432 Pnap_0845 Polaromonas naphthalenivorans CJ2 citrate synthase YP_981083.1 893581 D 365044 CDS YP_981084.1 121603755 4687430 894869..897445 1 NC_008781.1 PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_0944 protein of unknown function DUF214; hypothetical protein 897445 4687430 Pnap_0846 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981084.1 894869 D 365044 CDS YP_981085.1 121603756 4687422 897460..897891 1 NC_008781.1 PFAM: globin; KEGG: pol:Bpro_0945 globin; globin 897891 4687422 Pnap_0847 Polaromonas naphthalenivorans CJ2 globin YP_981085.1 897460 D 365044 CDS YP_981086.1 121603757 4687459 898032..899366 1 NC_008781.1 hypothetical protein 899366 4687459 Pnap_0848 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981086.1 898032 D 365044 CDS YP_981087.1 121603758 4687447 899381..900997 1 NC_008781.1 PFAM: MORN repeat-containing protein; KEGG: lma:LmjF30.3310 hypothetical protein, conserved; MORN repeat-containing protein 900997 4687447 Pnap_0849 Polaromonas naphthalenivorans CJ2 MORN repeat-containing protein YP_981087.1 899381 D 365044 CDS YP_981088.1 121603759 4687239 complement(901097..902194) 1 NC_008781.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1148 ABC transporter related; ABC transporter-like protein 902194 4687239 Pnap_0850 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981088.1 901097 R 365044 CDS YP_981089.1 121603760 4687475 902279..903901 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1149 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 903901 4687475 Pnap_0851 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_981089.1 902279 D 365044 CDS YP_981090.1 121603761 4687444 904080..904301 1 NC_008781.1 PFAM: CsbD family protein; KEGG: pol:Bpro_1152 CsbD-like; CsbD family protein 904301 4687444 Pnap_0852 Polaromonas naphthalenivorans CJ2 CsbD family protein YP_981090.1 904080 D 365044 CDS YP_981091.1 121603762 4687492 904357..904926 1 NC_008781.1 KEGG: pol:Bpro_1153 hypothetical protein; hypothetical protein 904926 4687492 Pnap_0853 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981091.1 904357 D 365044 CDS YP_981092.1 121603763 4687942 complement(905043..905357) 1 NC_008781.1 hypothetical protein 905357 4687942 Pnap_0854 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981092.1 905043 R 365044 CDS YP_981093.1 121603764 4687951 905437..907767 1 NC_008781.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sensor histidine kinase/response regulator; GAF sensor hybrid histidine kinase 907767 4687951 Pnap_0855 Polaromonas naphthalenivorans CJ2 GAF sensor hybrid histidine kinase YP_981093.1 905437 D 365044 CDS YP_981094.1 121603765 4687451 complement(907982..912022) 1 NC_008781.1 PFAM: protein of unknown function DUF490; KEGG: pol:Bpro_1217 protein of unknown function DUF490; hypothetical protein 912022 4687451 Pnap_0856 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981094.1 907982 R 365044 CDS YP_981095.1 121603766 4687980 complement(912022..913977) 1 NC_008781.1 PFAM: surface antigen (D15); KEGG: pol:Bpro_1218 surface antigen (D15); surface antigen (D15) 913977 4687980 Pnap_0857 Polaromonas naphthalenivorans CJ2 surface antigen (D15) YP_981095.1 912022 R 365044 CDS YP_981096.1 121603767 4688001 complement(914044..915267) 1 NC_008781.1 KEGG: pol:Bpro_1219 hypothetical protein; hypothetical protein 915267 4688001 Pnap_0858 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981096.1 914044 R 365044 CDS YP_981097.1 121603768 4687986 complement(915283..915879) 1 NC_008781.1 KEGG: pol:Bpro_1220 hypothetical protein; hypothetical protein 915879 4687986 Pnap_0859 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981097.1 915283 R 365044 CDS YP_981098.1 121603769 4687984 complement(915904..916746) 1 NC_008781.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1222 ATPase associated with various cellular activities, AAA_5; ATPase 916746 4687984 Pnap_0860 Polaromonas naphthalenivorans CJ2 ATPase YP_981098.1 915904 R 365044 CDS YP_981099.1 121603770 4688069 916879..917556 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_1223 cytochrome c, class I; class I cytochrome c 917556 4688069 Pnap_0861 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_981099.1 916879 D 365044 CDS YP_981100.1 121603771 4688044 complement(917643..918077) 1 NC_008781.1 KEGG: pol:Bpro_1226 hypothetical protein; hypothetical protein 918077 4688044 Pnap_0862 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981100.1 917643 R 365044 CDS YP_981101.1 121603772 4688048 918232..918453 1 NC_008781.1 KEGG: pol:Bpro_1227 hypothetical protein; hypothetical protein 918453 4688048 Pnap_0863 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981101.1 918232 D 365044 CDS YP_981102.1 121603773 4688091 complement(918486..919322) 1 NC_008781.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1228 transcriptional regulator, IclR family; beta-ketoadipate pathway transcription regulator 919322 4688091 Pnap_0864 Polaromonas naphthalenivorans CJ2 beta-ketoadipate pathway transcription regulator YP_981102.1 918486 R 365044 CDS YP_981103.1 121603774 4688093 919468..920178 1 NC_008781.1 KEGG: pol:Bpro_1229 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 920178 4688093 Pnap_0865 Polaromonas naphthalenivorans CJ2 3-oxoacid CoA-transferase subunit A YP_981103.1 919468 D 365044 CDS YP_981104.1 121603775 4687784 920197..920841 1 NC_008781.1 KEGG: pol:Bpro_1230 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 920841 4687784 Pnap_0866 Polaromonas naphthalenivorans CJ2 3-oxoacid CoA-transferase subunit B YP_981104.1 920197 D 365044 CDS YP_981105.1 121603776 4688117 920891..922099 1 NC_008781.1 KEGG: pol:Bpro_1231 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase 922099 4688117 Pnap_0867 Polaromonas naphthalenivorans CJ2 beta-ketoadipyl CoA thiolase YP_981105.1 920891 D 365044 CDS YP_981106.1 121603777 4688133 922105..922839 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_B5588 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 922839 4688133 Pnap_0868 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_981106.1 922105 D 365044 CDS YP_981107.1 121603778 4688137 922885..923904 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein 923904 4688137 Pnap_0869 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981107.1 922885 D 365044 CDS YP_981108.1 121603779 4688145 complement(923909..924550) 1 NC_008781.1 PFAM: protein of unknown function UPF0126; KEGG: rme:Rmet_0682 protein of unknown function UPF0126; hypothetical protein 924550 4688145 Pnap_0870 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981108.1 923909 R 365044 CDS YP_981109.1 121603780 4687864 924706..925743 1 NC_008781.1 KEGG: xom:XOO_3993 ISXo7 transposase; ISXo7 transposase 925743 4687864 Pnap_0871 Polaromonas naphthalenivorans CJ2 ISXo7 transposase YP_981109.1 924706 D 365044 CDS YP_981110.1 121603781 4688189 complement(925769..927676) 1 NC_008781.1 transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 927676 4688189 Pnap_0872 Polaromonas naphthalenivorans CJ2 glutathione-regulated potassium-efflux system protein KefC YP_981110.1 925769 R 365044 CDS YP_981111.1 121603782 4687872 927738..928193 1 NC_008781.1 PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_1240 MaoC-like dehydratase; dehydratase 928193 4687872 Pnap_0873 Polaromonas naphthalenivorans CJ2 dehydratase YP_981111.1 927738 D 365044 CDS YP_981112.1 121603783 4688147 complement(928215..928694) 1 NC_008781.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_1241 RNA methyltransferase TrmH, group 2; RNA methyltransferase 928694 4688147 Pnap_0874 Polaromonas naphthalenivorans CJ2 RNA methyltransferase YP_981112.1 928215 R 365044 CDS YP_981113.1 121603784 4688220 complement(928765..929532) 1 NC_008781.1 KEGG: pol:Bpro_1242 hypothetical protein; hypothetical protein 929532 4688220 Pnap_0875 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981113.1 928765 R 365044 CDS YP_981114.1 121603785 4688734 929576..930478 1 NC_008781.1 KEGG: pol:Bpro_1243 biotin synthesis protein BioC; biotin synthesis protein BioC 930478 4688734 Pnap_0876 Polaromonas naphthalenivorans CJ2 biotin synthesis protein BioC YP_981114.1 929576 D 365044 CDS YP_981115.1 121603786 4688729 930646..931140 1 NC_008781.1 KEGG: pol:Bpro_1244 putative transmembrane protein; hypothetical protein 931140 4688729 Pnap_0877 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981115.1 930646 D 365044 CDS YP_981116.1 121603787 4688736 931255..932460 1 NC_008781.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: pol:Bpro_1245 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 932460 4688736 Pnap_0878 Polaromonas naphthalenivorans CJ2 cytochrome c oxidase subunit II YP_981116.1 931255 D 365044 CDS YP_981117.1 121603788 4688774 932554..934188 1 NC_008781.1 PFAM: cytochrome c oxidase, subunit I; KEGG: pol:Bpro_1246 cytochrome-c oxidase; cytochrome-c oxidase 934188 4688774 Pnap_0879 Polaromonas naphthalenivorans CJ2 cytochrome-c oxidase YP_981117.1 932554 D 365044 CDS YP_981118.1 121603789 4688745 934350..934928 1 NC_008781.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 934928 4688745 Pnap_0880 Polaromonas naphthalenivorans CJ2 cytochrome C oxidase assembly protein YP_981118.1 934350 D 365044 CDS YP_981119.1 121603790 4688744 934925..935137 1 NC_008781.1 KEGG: pol:Bpro_1248 hypothetical protein; hypothetical protein 935137 4688744 Pnap_0881 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981119.1 934925 D 365044 CDS YP_981120.1 121603791 4688767 935197..936078 1 NC_008781.1 PFAM: cytochrome c oxidase, subunit III; KEGG: pol:Bpro_1249 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 936078 4688767 Pnap_0882 Polaromonas naphthalenivorans CJ2 cytochrome c oxidase subunit III YP_981120.1 935197 D 365044 CDS YP_981121.1 121603792 4688788 complement(936164..936385) 1 NC_008781.1 KEGG: pol:Bpro_1250 putative transmembrane protein; hypothetical protein 936385 4688788 Pnap_0883 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981121.1 936164 R 365044 CDS YP_981122.1 121603793 4688772 936404..937150 1 NC_008781.1 KEGG: pol:Bpro_1251 putative transmembrane cytochrome oxidase; putative transmembrane cytochrome oxidase 937150 4688772 Pnap_0884 Polaromonas naphthalenivorans CJ2 putative transmembrane cytochrome oxidase YP_981122.1 936404 D 365044 CDS YP_981123.1 121603794 4688817 937309..937881 1 NC_008781.1 KEGG: pol:Bpro_1252 hypothetical protein; hypothetical protein 937881 4688817 Pnap_0885 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981123.1 937309 D 365044 CDS YP_981124.1 121603795 4688791 938028..939206 1 NC_008781.1 PFAM: cytochrome oxidase assembly; KEGG: pol:Bpro_1253 cytochrome oxidase assembly; cytochrome oxidase assembly 939206 4688791 Pnap_0886 Polaromonas naphthalenivorans CJ2 cytochrome oxidase assembly YP_981124.1 938028 D 365044 CDS YP_981125.1 121603796 4688750 939203..940123 1 NC_008781.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 940123 4688750 Pnap_0887 Polaromonas naphthalenivorans CJ2 protoheme IX farnesyltransferase YP_981125.1 939203 D 365044 CDS YP_981126.1 121603797 4688587 940120..940752 1 NC_008781.1 PFAM: electron transport protein SCO1/SenC; KEGG: pol:Bpro_1255 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 940752 4688587 Pnap_0888 Polaromonas naphthalenivorans CJ2 electron transport protein SCO1/SenC YP_981126.1 940120 D 365044 CDS YP_981127.1 121603798 4688799 complement(940820..941788) 1 NC_008781.1 TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; KEGG: pol:Bpro_1256 sigma 32 (RpoH); RNA polymerase sigma-32 subunit RpoH 941788 4688799 Pnap_0889 Polaromonas naphthalenivorans CJ2 RNA polymerase sigma-32 subunit RpoH YP_981127.1 940820 R 365044 CDS YP_981128.1 121603799 4688835 complement(942058..942345) 1 NC_008781.1 KEGG: pol:Bpro_1272 hypothetical protein; hypothetical protein 942345 4688835 Pnap_0890 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981128.1 942058 R 365044 CDS YP_981129.1 121603800 4688827 complement(942444..943616) 1 NC_008781.1 KEGG: pol:Bpro_1278 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 943616 4688827 Pnap_0891 Polaromonas naphthalenivorans CJ2 signal recognition particle-docking protein FtsY YP_981129.1 942444 R 365044 CDS YP_981130.1 121603801 4688842 943645..945144 1 NC_008781.1 PFAM: peptidase M16 domain protein; KEGG: pol:Bpro_1279 peptidase M16-like; peptidase M16 domain-containing protein 945144 4688842 Pnap_0892 Polaromonas naphthalenivorans CJ2 peptidase M16 domain-containing protein YP_981130.1 943645 D 365044 CDS YP_981131.1 121603802 4688860 945176..946531 1 NC_008781.1 PFAM: peptidase M16 domain protein; KEGG: pol:Bpro_1280 peptidase M16-like; peptidase M16 domain-containing protein 946531 4688860 Pnap_0893 Polaromonas naphthalenivorans CJ2 peptidase M16 domain-containing protein YP_981131.1 945176 D 365044 CDS YP_981132.1 121603803 4688846 946528..947202 1 NC_008781.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: pol:Bpro_1281 conserved hypothetical protein 95; putative methyltransferase 947202 4688846 Pnap_0894 Polaromonas naphthalenivorans CJ2 putative methyltransferase YP_981132.1 946528 D 365044 CDS YP_981133.1 121603804 4688877 947268..947789 1 NC_008781.1 KEGG: pol:Bpro_1282 coenzyme A biosynthesis protein; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 947789 4688877 Pnap_0895 Polaromonas naphthalenivorans CJ2 pantetheine-phosphate adenylyltransferase YP_981133.1 947268 D 365044 CDS YP_981134.1 121603805 4688684 947794..948063 1 NC_008781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_1283 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 948063 4688684 Pnap_0896 Polaromonas naphthalenivorans CJ2 4Fe-4S ferredoxin YP_981134.1 947794 D 365044 CDS YP_981135.1 121603806 4688888 complement(948167..948859) 1 NC_008781.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 948859 4688888 Pnap_0897 Polaromonas naphthalenivorans CJ2 peptidyl-tRNA hydrolase YP_981135.1 948167 R 365044 CDS YP_981136.1 121603807 4688889 complement(948954..949610) 1 NC_008781.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 949610 4688889 Pnap_0898 Polaromonas naphthalenivorans CJ2 50S ribosomal protein L25/general stress protein Ctc YP_981136.1 948954 R 365044 CDS YP_981137.1 121603808 4688896 complement(949720..950694) 1 NC_008781.1 KEGG: pol:Bpro_1293 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 950694 4688896 Pnap_0899 Polaromonas naphthalenivorans CJ2 ribose-phosphate pyrophosphokinase YP_981137.1 949720 R 365044 CDS YP_981138.1 121603809 4686996 complement(951061..951954) 1 NC_008781.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 951954 ipk 4686996 ipk Polaromonas naphthalenivorans CJ2 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_981138.1 951061 R 365044 CDS YP_981139.1 121603810 4688908 complement(951999..952511) 1 NC_008781.1 KEGG: pol:Bpro_1295 putative lipoprotein; putative lipoprotein 952511 4688908 Pnap_0901 Polaromonas naphthalenivorans CJ2 putative lipoprotein YP_981139.1 951999 R 365044 CDS YP_981140.1 121603811 4688679 complement(952524..954401) 1 NC_008781.1 SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1296 tetratricopeptide TPR_4; hypothetical protein 954401 4688679 Pnap_0902 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981140.1 952524 R 365044 CDS YP_981141.1 121603812 4689430 954445..955260 1 NC_008781.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 955260 4689430 Pnap_0903 Polaromonas naphthalenivorans CJ2 formamidopyrimidine-DNA glycosylase YP_981141.1 954445 D 365044 CDS YP_981142.1 121603813 4688934 955325..957301 1 NC_008781.1 KEGG: pol:Bpro_1298 hypothetical protein; hypothetical protein 957301 4688934 Pnap_0904 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981142.1 955325 D 365044 CDS YP_981143.1 121603814 4689165 957301..958455 1 NC_008781.1 KEGG: pol:Bpro_1299 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; A/G-specific adenine glycosylase 958455 4689165 Pnap_0905 Polaromonas naphthalenivorans CJ2 A/G-specific adenine glycosylase YP_981143.1 957301 D 365044 CDS YP_981144.1 121603815 4689438 complement(958456..959313) 1 NC_008781.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: pol:Bpro_1300 uncharacterised P-loop ATPase protein UPF0042; hypothetical protein 959313 4689438 Pnap_0906 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981144.1 958456 R 365044 CDS YP_981145.1 121603816 4689432 complement(959468..961117) 1 NC_008781.1 KEGG: pol:Bpro_1301 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; SMART: AAA ATPase; DNA repair protein RecN 961117 4689432 Pnap_0907 Polaromonas naphthalenivorans CJ2 DNA repair protein RecN YP_981145.1 959468 R 365044 CDS YP_981146.1 121603817 4689510 complement(961152..962027) 1 NC_008781.1 catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein 962027 ppnK 4689510 ppnK Polaromonas naphthalenivorans CJ2 NAD(+)/NADH kinase family protein YP_981146.1 961152 R 365044 CDS YP_981147.1 121603818 4689550 962077..963090 1 NC_008781.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 963090 hrcA 4689550 hrcA Polaromonas naphthalenivorans CJ2 heat-inducible transcription repressor YP_981147.1 962077 D 365044 CDS YP_981148.1 121603819 4686626 963319..963783 1 NC_008781.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 963783 ntpA 4686626 ntpA Polaromonas naphthalenivorans CJ2 dATP pyrophosphohydrolase YP_981148.1 963319 D 365044 CDS YP_981149.1 121603820 4689610 963818..965137 1 NC_008781.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_0868 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 965137 4689610 Pnap_0911 Polaromonas naphthalenivorans CJ2 phospholipase D/transphosphatidylase YP_981149.1 963818 D 365044 CDS YP_981150.1 121603821 4689557 965291..966013 1 NC_008781.1 PFAM: GTP cyclohydrolase I; KEGG: pol:Bpro_0869 GTP cyclohydrolase I; GTP cyclohydrolase I 966013 4689557 Pnap_0912 Polaromonas naphthalenivorans CJ2 GTP cyclohydrolase I YP_981150.1 965291 D 365044 CDS YP_981151.1 121603822 4689551 966018..966440 1 NC_008781.1 PFAM: BLUF domain protein; KEGG: pol:Bpro_0870 sensors of blue-light using FAD; BLUF domain-containing protein 966440 4689551 Pnap_0913 Polaromonas naphthalenivorans CJ2 BLUF domain-containing protein YP_981151.1 966018 D 365044 CDS YP_981152.1 121603823 4689594 966504..967343 1 NC_008781.1 KEGG: pol:Bpro_0871 hypothetical protein; hypothetical protein 967343 4689594 Pnap_0914 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981152.1 966504 D 365044 CDS YP_981153.1 121603824 4689558 967696..968193 1 NC_008781.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0874 transport-associated; transporter 968193 4689558 Pnap_0915 Polaromonas naphthalenivorans CJ2 transporter YP_981153.1 967696 D 365044 CDS YP_981154.1 121603825 4689595 complement(968340..968654) 1 NC_008781.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0875 transport-associated; transporter 968654 4689595 Pnap_0916 Polaromonas naphthalenivorans CJ2 transporter YP_981154.1 968340 R 365044 CDS YP_981155.1 121603826 4689620 complement(968836..969285) 1 NC_008781.1 KEGG: pol:Bpro_0876 hypothetical protein; hypothetical protein 969285 4689620 Pnap_0917 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981155.1 968836 R 365044 CDS YP_981156.1 121603827 4689574 complement(969312..969677) 1 NC_008781.1 KEGG: pol:Bpro_0877 hypothetical protein; hypothetical protein 969677 4689574 Pnap_0918 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981156.1 969312 R 365044 CDS YP_981157.1 121603828 4689632 complement(969747..970151) 1 NC_008781.1 KEGG: pol:Bpro_0878 hypothetical protein; hypothetical protein 970151 4689632 Pnap_0919 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981157.1 969747 R 365044 CDS YP_981158.1 121603829 4689656 complement(970228..970392) 1 NC_008781.1 PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0879 protein of unknown function DUF1328; hypothetical protein 970392 4689656 Pnap_0920 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981158.1 970228 R 365044 CDS YP_981159.1 121603830 4690063 complement(970615..971955) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; CHASE3 domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_0880 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 971955 4690063 Pnap_0921 Polaromonas naphthalenivorans CJ2 multi-sensor signal transduction histidine kinase YP_981159.1 970615 R 365044 CDS YP_981160.1 121603831 4689648 972091..972723 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_0881 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 972723 4689648 Pnap_0922 Polaromonas naphthalenivorans CJ2 two component LuxR family transcriptional regulator YP_981160.1 972091 D 365044 CDS YP_981161.1 121603832 4689658 complement(972854..973252) 1 NC_008781.1 PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like); response regulator receiver protein 973252 4689658 Pnap_0923 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_981161.1 972854 R 365044 CDS YP_981162.1 121603833 4689628 973616..975628 1 NC_008781.1 PFAM: AsmA family protein; KEGG: pol:Bpro_0883 AsmA; AsmA family protein 975628 4689628 Pnap_0924 Polaromonas naphthalenivorans CJ2 AsmA family protein YP_981162.1 973616 D 365044 CDS YP_981163.1 121603834 4689659 complement(975630..976430) 1 NC_008781.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pol:Bpro_0884 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD-binding protein 976430 4689659 Pnap_0925 Polaromonas naphthalenivorans CJ2 UBA/THIF-type NAD/FAD-binding protein YP_981163.1 975630 R 365044 CDS YP_981164.1 121603835 4690092 complement(976537..977976) 1 NC_008781.1 KEGG: pol:Bpro_0885 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 977976 4690092 Pnap_0926 Polaromonas naphthalenivorans CJ2 carboxyl-terminal protease YP_981164.1 976537 R 365044 CDS YP_981165.1 121603836 4690171 complement(978227..978979) 1 NC_008781.1 KEGG: pol:Bpro_0886 phosphoglycerate mutase 1 family; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 978979 4690171 Pnap_0927 Polaromonas naphthalenivorans CJ2 phosphoglycerate mutase YP_981165.1 978227 R 365044 CDS YP_981166.1 121603837 4689906 979125..979511 1 NC_008781.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_0887 rhodanese-like; rhodanese domain-containing protein 979511 4689906 Pnap_0928 Polaromonas naphthalenivorans CJ2 rhodanese domain-containing protein YP_981166.1 979125 D 365044 CDS YP_981167.1 121603838 4690148 979631..979894 1 NC_008781.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: pol:Bpro_0888 glutaredoxin, GrxC; glutaredoxin 3 979894 4690148 Pnap_0929 Polaromonas naphthalenivorans CJ2 glutaredoxin 3 YP_981167.1 979631 D 365044 CDS YP_981168.1 121603839 4689660 980063..980530 1 NC_008781.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 980530 4689660 Pnap_0930 Polaromonas naphthalenivorans CJ2 preprotein translocase subunit SecB YP_981168.1 980063 D 365044 CDS YP_981169.1 121603840 4690204 980571..981629 1 NC_008781.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 981629 gpsA 4690204 gpsA Polaromonas naphthalenivorans CJ2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_981169.1 980571 D 365044 CDS YP_981170.1 121603841 4690047 complement(981681..982010) 1 NC_008781.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_0891 cupin 2, conserved barrel; cupin 982010 4690047 Pnap_0932 Polaromonas naphthalenivorans CJ2 cupin YP_981170.1 981681 R 365044 CDS YP_981171.1 121603842 4689781 complement(982070..982921) 1 NC_008781.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 982921 panC 4689781 panC Polaromonas naphthalenivorans CJ2 pantoate--beta-alanine ligase YP_981171.1 982070 R 365044 CDS YP_981172.1 121603843 4689937 complement(982964..983866) 1 NC_008781.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 983866 panB 4689937 panB Polaromonas naphthalenivorans CJ2 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_981172.1 982964 R 365044 CDS YP_981173.1 121603844 4689713 984155..984451 1 NC_008781.1 KEGG: tbd:Tbd_2741 hypothetical protein; hypothetical protein 984451 4689713 Pnap_0935 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981173.1 984155 D 365044 CDS YP_981174.1 121603845 4689725 complement(984496..984879) 1 NC_008781.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 984879 4689725 Pnap_0936 Polaromonas naphthalenivorans CJ2 aspartate alpha-decarboxylase YP_981174.1 984496 R 365044 CDS YP_981175.1 121603846 4689715 985054..985929 1 NC_008781.1 KEGG: pol:Bpro_0902 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 985929 4689715 Pnap_0937 Polaromonas naphthalenivorans CJ2 nicotinate-nucleotide pyrophosphorylase YP_981175.1 985054 D 365044 CDS YP_981176.1 121603847 4689700 985929..987062 1 NC_008781.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 987062 4689700 Pnap_0938 Polaromonas naphthalenivorans CJ2 quinolinate synthetase YP_981176.1 985929 D 365044 CDS YP_981177.1 121603848 4689708 987194..988969 1 NC_008781.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: pol:Bpro_0904 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I 988969 4689708 Pnap_0939 Polaromonas naphthalenivorans CJ2 para-aminobenzoate synthase subunit I YP_981177.1 987194 D 365044 CDS YP_981178.1 121603849 4689681 complement(989024..989569) 1 NC_008781.1 TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: bxe:Bxe_A4178 protein export chaperone SecB; protein-export protein SecB 989569 4689681 Pnap_0940 Polaromonas naphthalenivorans CJ2 protein-export protein SecB YP_981178.1 989024 R 365044 CDS YP_981179.1 121603850 4689451 complement(989587..990093) 1 NC_008781.1 KEGG: rme:Rmet_4107 acetone carboxylase gamma subunit; acetone carboxylase subunit gamma 990093 4689451 Pnap_0941 Polaromonas naphthalenivorans CJ2 acetone carboxylase subunit gamma YP_981179.1 989587 R 365044 CDS YP_981180.1 121603851 4689657 complement(990151..992475) 1 NC_008781.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: dar:Daro_1019 hydantoinase B/oxoprolinase; hydantoinase B/oxoprolinase 992475 4689657 Pnap_0942 Polaromonas naphthalenivorans CJ2 hydantoinase B/oxoprolinase YP_981180.1 990151 R 365044 CDS YP_981181.1 121603852 4690164 complement(992487..994634) 1 NC_008781.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: reu:Reut_C6172 hydantoinase/oxoprolinase:hydantoinaseoxoprolina se, N-terminal; hydantoinase/oxoprolinase 994634 4690164 Pnap_0943 Polaromonas naphthalenivorans CJ2 hydantoinase/oxoprolinase YP_981181.1 992487 R 365044 CDS YP_981182.1 121603853 4689705 995002..997023 1 NC_008781.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: eba:ebA4722 sigma-54 dependent transcriptional activator; Fis family GAF modulated sigma54 specific transcriptional regulator 997023 4689705 Pnap_0944 Polaromonas naphthalenivorans CJ2 Fis family GAF modulated sigma54 specific transcriptional regulator YP_981182.1 995002 D 365044 CDS YP_981183.1 121603854 4689406 complement(997184..997831) 1 NC_008781.1 PFAM: DTW domain containing protein; KEGG: pfo:Pfl_1459 DTW; DTW domain-containing protein 997831 4689406 Pnap_0945 Polaromonas naphthalenivorans CJ2 DTW domain-containing protein YP_981183.1 997184 R 365044 CDS YP_981184.1 121603855 4689122 997949..999607 1 NC_008781.1 KEGG: reu:Reut_B4925 malonate decarboxylase alpha subunit; malonate decarboxylase subunit alpha 999607 4689122 Pnap_0946 Polaromonas naphthalenivorans CJ2 malonate decarboxylase subunit alpha YP_981184.1 997949 D 365044 CDS YP_981185.1 121603856 4689449 999607..1000491 1 NC_008781.1 PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: reu:Reut_B4926 triphosphoribosyl-dephospho-CoA synthase; triphosphoribosyl-dephospho-CoA synthase 1000491 4689449 Pnap_0947 Polaromonas naphthalenivorans CJ2 triphosphoribosyl-dephospho-CoA synthase YP_981185.1 999607 D 365044 CDS YP_981186.1 121603857 4689903 1000500..1000823 1 NC_008781.1 acyl carrier protein of malonate decarboxylase; malonate decarboxylase subunit delta 1000823 4689903 Pnap_0948 Polaromonas naphthalenivorans CJ2 malonate decarboxylase subunit delta YP_981186.1 1000500 D 365044 CDS YP_981187.1 121603858 4688632 1000820..1001698 1 NC_008781.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta 1001698 4688632 Pnap_0949 Polaromonas naphthalenivorans CJ2 malonate decarboxylase subunit beta YP_981187.1 1000820 D 365044 CDS YP_981188.1 121603859 4688999 1001691..1002497 1 NC_008781.1 PFAM: malonate decarboxylase gamma subunit; KEGG: reu:Reut_B4929 malonate decarboxylase gamma subunit; malonate decarboxylase subunit gamma 1002497 4688999 Pnap_0950 Polaromonas naphthalenivorans CJ2 malonate decarboxylase subunit gamma YP_981188.1 1001691 D 365044 CDS YP_981189.1 121603860 4688694 1002494..1003186 1 NC_008781.1 Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein; phosphoribosyl-dephospho-CoA transferase 1003186 4688694 Pnap_0951 Polaromonas naphthalenivorans CJ2 phosphoribosyl-dephospho-CoA transferase YP_981189.1 1002494 D 365044 CDS YP_981190.1 121603861 4688991 1003183..1004118 1 NC_008781.1 PFAM: acyl transferase domain protein; KEGG: reu:Reut_B4931 acyl transferase region; acyl transferase domain-containing protein 1004118 4688991 Pnap_0952 Polaromonas naphthalenivorans CJ2 acyl transferase domain-containing protein YP_981190.1 1003183 D 365044 CDS YP_981191.1 121603862 4688906 complement(1004269..1005042) 1 NC_008781.1 PFAM: malonate/sodium symporter MadM subunit; KEGG: pae:PA0216 probable transporter; malonate/sodium symporter subunit MadM 1005042 4688906 Pnap_0953 Polaromonas naphthalenivorans CJ2 malonate/sodium symporter subunit MadM YP_981191.1 1004269 R 365044 CDS YP_981192.1 121603863 4688978 complement(1005039..1005458) 1 NC_008781.1 PFAM: malonate transporter MadL subunit; KEGG: pae:PA0215 probable transporter; malonate transporter MadL subunit 1005458 4688978 Pnap_0954 Polaromonas naphthalenivorans CJ2 malonate transporter MadL subunit YP_981192.1 1005039 R 365044 CDS YP_981193.1 121603864 4688898 complement(1005642..1006556) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B1014 transcriptional regulator, LysR family; LysR family transcriptional regulator 1006556 4688898 Pnap_0955 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981193.1 1005642 R 365044 CDS YP_981194.1 121603865 4688849 complement(1006731..1008308) 1 NC_008781.1 KEGG: pol:Bpro_0905 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; L-aspartate oxidase 1008308 4688849 Pnap_0956 Polaromonas naphthalenivorans CJ2 L-aspartate oxidase YP_981194.1 1006731 R 365044 CDS YP_981195.1 121603866 4688832 complement(1008344..1009195) 1 NC_008781.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: pol:Bpro_0906 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 1009195 4688832 Pnap_0957 Polaromonas naphthalenivorans CJ2 chromosome segregation and condensation protein ScpA YP_981195.1 1008344 R 365044 CDS YP_981196.1 121603867 4688695 complement(1009294..1009512) 1 NC_008781.1 KEGG: pol:Bpro_0907 hypothetical protein; hypothetical protein 1009512 4688695 Pnap_0958 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981196.1 1009294 R 365044 CDS YP_981197.1 121603868 4688764 1009631..1010143 1 NC_008781.1 KEGG: pol:Bpro_0908 putative lipoprotein; putative lipoprotein 1010143 4688764 Pnap_0959 Polaromonas naphthalenivorans CJ2 putative lipoprotein YP_981197.1 1009631 D 365044 CDS YP_981198.1 121603869 4688622 complement(1010210..1011880) 1 NC_008781.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dar:Daro_0571 sulphate anion transporter; sulfate transporter 1011880 4688622 Pnap_0960 Polaromonas naphthalenivorans CJ2 sulfate transporter YP_981198.1 1010210 R 365044 CDS YP_981199.1 121603870 4688816 complement(1012476..1014401) 1 NC_008781.1 PFAM: peptidase S14, ClpP; KEGG: sdn:Sden_3249 peptidase S14, ClpP; peptidase S14, ClpP 1014401 4688816 Pnap_0961 Polaromonas naphthalenivorans CJ2 peptidase S14, ClpP YP_981199.1 1012476 R 365044 CDS YP_981200.1 121603871 4688755 complement(1014356..1015252) 1 NC_008781.1 hypothetical protein 1015252 4688755 Pnap_0962 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981200.1 1014356 R 365044 CDS YP_981201.1 121603872 4690136 complement(1015611..1017158) 1 NC_008781.1 KEGG: pfo:Pfl_0744 hypothetical protein; hypothetical protein 1017158 4690136 Pnap_0963 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981201.1 1015611 R 365044 CDS YP_981202.1 121603873 4687742 complement(1017155..1017991) 1 NC_008781.1 KEGG: rso:RSc2483 hypothetical protein; hypothetical protein 1017991 4687742 Pnap_0964 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981202.1 1017155 R 365044 CDS YP_981203.1 121603874 4688343 complement(1017988..1018302) 1 NC_008781.1 hypothetical protein 1018302 4688343 Pnap_0965 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981203.1 1017988 R 365044 CDS YP_981204.1 121603875 4686283 complement(1018306..1018608) 1 NC_008781.1 hypothetical protein 1018608 4686283 Pnap_0966 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981204.1 1018306 R 365044 CDS YP_981205.1 121603876 4688301 complement(1018612..1019019) 1 NC_008781.1 hypothetical protein 1019019 4688301 Pnap_0967 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981205.1 1018612 R 365044 CDS YP_981206.1 121603877 4688319 1019035..1019367 1 NC_008781.1 hypothetical protein 1019367 4688319 Pnap_0968 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981206.1 1019035 D 365044 CDS YP_981207.1 121603878 4688295 complement(1019575..1020432) 1 NC_008781.1 hypothetical protein 1020432 4688295 Pnap_0969 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981207.1 1019575 R 365044 CDS YP_981208.1 121603879 4688259 complement(1020439..1021659) 1 NC_008781.1 PFAM: phage integrase family protein; KEGG: pol:Bpro_0966 phage integrase; phage integrase family protein 1021659 4688259 Pnap_0970 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_981208.1 1020439 R 365044 CDS YP_981209.1 121603880 4686835 complement(1021978..1022634) 1 NC_008781.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: pol:Bpro_1347 urease accessory protein UreG; urease accessory protein UreG 1022634 4686835 Pnap_0971 Polaromonas naphthalenivorans CJ2 urease accessory protein UreG YP_981209.1 1021978 R 365044 CDS YP_981210.1 121603881 4688275 complement(1022673..1023371) 1 NC_008781.1 PFAM: Urease accessory protein UreF; KEGG: pol:Bpro_1348 urease accessory protein UreF; urease accessory protein UreF 1023371 4688275 Pnap_0972 Polaromonas naphthalenivorans CJ2 urease accessory protein UreF YP_981210.1 1022673 R 365044 CDS YP_981211.1 121603882 4688412 complement(1023368..1023994) 1 NC_008781.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 1023994 ureE 4688412 ureE Polaromonas naphthalenivorans CJ2 urease accessory protein UreE YP_981211.1 1023368 R 365044 CDS YP_981212.1 121603883 4688265 complement(1024002..1025720) 1 NC_008781.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 1025720 ureC 4688265 ureC Polaromonas naphthalenivorans CJ2 urease subunit alpha YP_981212.1 1024002 R 365044 CDS YP_981213.1 121603884 4688266 complement(1025720..1026025) 1 NC_008781.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta 1026025 ureB 4688266 ureB Polaromonas naphthalenivorans CJ2 urease subunit beta YP_981213.1 1025720 R 365044 CDS YP_981214.1 121603885 4688250 complement(1026039..1026632) 1 NC_008781.1 PFAM: HupE/UreJ protein; KEGG: cvi:CV1191 urease accessory protein; HupE/UreJ protein 1026632 4688250 Pnap_0976 Polaromonas naphthalenivorans CJ2 HupE/UreJ protein YP_981214.1 1026039 R 365044 CDS YP_981215.1 121603886 4688200 complement(1026751..1027053) 1 NC_008781.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 1027053 ureA 4688200 ureA Polaromonas naphthalenivorans CJ2 urease subunit gamma YP_981215.1 1026751 R 365044 CDS YP_981216.1 121603887 4688202 1027200..1030727 1 NC_008781.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1353 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 1030727 4688202 Pnap_0978 Polaromonas naphthalenivorans CJ2 integral membrane sensor hybrid histidine kinase YP_981216.1 1027200 D 365044 CDS YP_981217.1 121603888 4688187 1030720..1031730 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_1354 two component transcriptional regulator, LuxR family; response regulator receiver protein 1031730 4688187 Pnap_0979 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_981217.1 1030720 D 365044 CDS YP_981218.1 121603889 4687737 1032077..1032316 1 NC_008781.1 KEGG: pol:Bpro_1355 hypothetical protein; hypothetical protein 1032316 4687737 Pnap_0980 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981218.1 1032077 D 365044 CDS YP_981219.1 121603890 4688192 1032387..1032644 1 NC_008781.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1032644 4688192 Pnap_0981 Polaromonas naphthalenivorans CJ2 translation initiation factor IF-1 YP_981219.1 1032387 D 365044 CDS YP_981220.1 121603891 4688108 complement(1032714..1034072) 1 NC_008781.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 1034072 4688108 Pnap_0982 Polaromonas naphthalenivorans CJ2 C4-dicarboxylate transporter DctA YP_981220.1 1032714 R 365044 CDS YP_981221.1 121603892 4688036 1034297..1034581 1 NC_008781.1 hypothetical protein 1034581 4688036 Pnap_0983 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981221.1 1034297 D 365044 CDS YP_981222.1 121603893 4687731 complement(1034639..1036960) 1 NC_008781.1 PFAM: DEAD_2 domain protein; SMART: DEXDc2; helicase c2; KEGG: pol:Bpro_1361 helicase C2; DEAD/DEAH box helicase 1036960 4687731 Pnap_0984 Polaromonas naphthalenivorans CJ2 DEAD/DEAH box helicase YP_981222.1 1034639 R 365044 CDS YP_981223.1 121603894 4687556 complement(1037018..1037608) 1 NC_008781.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: pol:Bpro_1363 putative signal transduction protein with EFhand domain; signal transduction protein 1037608 4687556 Pnap_0985 Polaromonas naphthalenivorans CJ2 signal transduction protein YP_981223.1 1037018 R 365044 CDS YP_981224.1 121603895 4688012 1037694..1038086 1 NC_008781.1 KEGG: pol:Bpro_1377 hypothetical protein; hypothetical protein 1038086 4688012 Pnap_0986 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981224.1 1037694 D 365044 CDS YP_981225.1 121603896 4687958 1038158..1039342 1 NC_008781.1 PFAM: protein of unknown function UPF0118; KEGG: rpc:RPC_2083 protein of unknown function UPF0118; hypothetical protein 1039342 4687958 Pnap_0987 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981225.1 1038158 D 365044 CDS YP_981226.1 121603897 4687655 1039564..1040067 1 NC_008781.1 hypothetical protein 1040067 4687655 Pnap_0988 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981226.1 1039564 D 365044 CDS YP_981227.1 121603898 4687992 1040118..1041245 1 NC_008781.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fra:Francci3_3228 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1041245 4687992 Pnap_0989 Polaromonas naphthalenivorans CJ2 endonuclease/exonuclease/phosphatase YP_981227.1 1040118 D 365044 CDS YP_981228.1 121603899 4688524 1041316..1042677 1 NC_008781.1 PFAM: protein of unknown function DUF107; KEGG: pol:Bpro_3548 protein of unknown function DUF107; hypothetical protein 1042677 4688524 Pnap_0990 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981228.1 1041316 D 365044 CDS YP_981229.1 121603900 4687555 1042674..1043447 1 NC_008781.1 PFAM: band 7 protein; KEGG: pol:Bpro_3547 band 7 protein; hypothetical protein 1043447 4687555 Pnap_0991 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981229.1 1042674 D 365044 CDS YP_981230.1 121603901 4687549 complement(1043487..1043795) 1 NC_008781.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: bja:blr1249 hypothetical protein; ethyl tert-butyl ether degradation EthD 1043795 4687549 Pnap_0992 Polaromonas naphthalenivorans CJ2 ethyl tert-butyl ether degradation EthD YP_981230.1 1043487 R 365044 CDS YP_981231.1 121603902 4687536 1043932..1045011 1 NC_008781.1 PFAM: protein of unknown function DUF1016; KEGG: lpn:lpg1084 hypothetical protein; hypothetical protein 1045011 4687536 Pnap_0993 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981231.1 1043932 D 365044 CDS YP_981232.1 121603903 4686853 complement(1045125..1045538) 1 NC_008781.1 KEGG: bxe:Bxe_A3975 transcriptional regulator, XRE family; hypothetical protein 1045538 4686853 Pnap_0994 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981232.1 1045125 R 365044 CDS YP_981233.1 121603904 4687351 complement(1045609..1047618) 1 NC_008781.1 KEGG: tde:TDE1620 hypothetical protein; hypothetical protein 1047618 4687351 Pnap_0995 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981233.1 1045609 R 365044 CDS YP_981234.1 121603905 4687313 complement(1047602..1049515) 1 NC_008781.1 KEGG: tde:TDE1621 predicted ATP-dependent endonuclease of the OLD family; ATP-dependent OLD family endonuclease 1049515 4687313 Pnap_0996 Polaromonas naphthalenivorans CJ2 ATP-dependent OLD family endonuclease YP_981234.1 1047602 R 365044 CDS YP_981235.1 121603906 4687325 1049613..1050896 1 NC_008781.1 KEGG: pol:Bpro_1393 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 1050896 4687325 Pnap_0997 Polaromonas naphthalenivorans CJ2 twin-arginine translocation pathway signal protein YP_981235.1 1049613 D 365044 CDS YP_981236.1 121603907 4686763 1050993..1052567 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1394 inner-membrane translocator; inner-membrane translocator 1052567 4686763 Pnap_0998 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_981236.1 1050993 D 365044 CDS YP_981237.1 121603908 4687004 1052571..1053782 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1395 inner-membrane translocator; inner-membrane translocator 1053782 4687004 Pnap_0999 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_981237.1 1052571 D 365044 CDS YP_981238.1 121603909 4687616 1053779..1054657 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1396 ABC transporter related; ABC transporter-like protein 1054657 4687616 Pnap_1000 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981238.1 1053779 D 365044 CDS YP_981239.1 121603910 4686844 1054647..1054994 1 NC_008781.1 KEGG: pol:Bpro_4480 hypothetical protein; hypothetical protein 1054994 4686844 Pnap_1001 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981239.1 1054647 D 365044 CDS YP_981240.1 121603911 4686659 1055157..1055852 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1397 ABC transporter related; ABC transporter-like protein 1055852 4686659 Pnap_1002 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981240.1 1055157 D 365044 CDS YP_981241.1 121603912 4686993 complement(1055959..1056402) 1 NC_008781.1 KEGG: pol:Bpro_1413 hypothetical protein; hypothetical protein 1056402 4686993 Pnap_1003 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981241.1 1055959 R 365044 CDS YP_981242.1 121603913 4686711 complement(1056572..1057402) 1 NC_008781.1 PFAM: Urease accessory protein UreD; KEGG: pol:Bpro_1414 urease accessory protein UreD; urease accessory protein UreD 1057402 4686711 Pnap_1004 Polaromonas naphthalenivorans CJ2 urease accessory protein UreD YP_981242.1 1056572 R 365044 CDS YP_981243.1 121603914 4686729 complement(1057546..1060134) 1 NC_008781.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 1060134 4686729 Pnap_1005 Polaromonas naphthalenivorans CJ2 cyanophycin synthetase YP_981243.1 1057546 R 365044 CDS YP_981244.1 121603915 4686812 complement(1060134..1062368) 1 NC_008781.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 1062368 4686812 Pnap_1006 Polaromonas naphthalenivorans CJ2 cyanophycin synthetase YP_981244.1 1060134 R 365044 CDS YP_981245.1 121603916 4686710 1062711..1065065 1 NC_008781.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1417 ABC transporter related; ABC transporter-like protein 1065065 4686710 Pnap_1007 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981245.1 1062711 D 365044 CDS YP_981246.1 121603917 4686704 1065088..1065570 1 NC_008781.1 KEGG: pol:Bpro_1418 hypothetical protein; hypothetical protein 1065570 4686704 Pnap_1008 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981246.1 1065088 D 365044 CDS YP_981247.1 121603918 4686487 1065673..1066068 1 NC_008781.1 hypothetical protein 1066068 4686487 Pnap_1009 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981247.1 1065673 D 365044 CDS YP_981248.1 121603919 4686281 complement(1066337..1068634) 1 NC_008781.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme 1068634 4686281 Pnap_1010 Polaromonas naphthalenivorans CJ2 malic enzyme YP_981248.1 1066337 R 365044 CDS YP_981249.1 121603920 4686347 1068704..1069891 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1427 twin-arginine translocation pathway signal; hypothetical protein 1069891 4686347 Pnap_1011 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981249.1 1068704 D 365044 CDS YP_981250.1 121603921 4686353 complement(1069900..1070409) 1 NC_008781.1 KEGG: pol:Bpro_1428 hypothetical protein; hypothetical protein 1070409 4686353 Pnap_1012 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981250.1 1069900 R 365044 CDS YP_981251.1 121603922 4686682 1070453..1071436 1 NC_008781.1 PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_1429 protein of unknown function DUF182; hypothetical protein 1071436 4686682 Pnap_1013 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981251.1 1070453 D 365044 CDS YP_981252.1 121603923 4686425 1071690..1072802 1 NC_008781.1 KEGG: pol:Bpro_1431 putative substrate-binding periplasmic (PBP) ABC transporter protein; putative substrate-binding periplasmic (PBP) ABC transporter protein 1072802 4686425 Pnap_1014 Polaromonas naphthalenivorans CJ2 putative substrate-binding periplasmic (PBP) ABC transporter protein YP_981252.1 1071690 D 365044 CDS YP_981253.1 121603924 4686317 complement(1072817..1073752) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0441 transcriptional regulator, LysR family; LysR family transcriptional regulator 1073752 4686317 Pnap_1015 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981253.1 1072817 R 365044 CDS YP_981254.1 121603925 4686060 1073857..1074945 1 NC_008781.1 KEGG: rfr:Rfer_0845 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1074945 4686060 Pnap_1016 Polaromonas naphthalenivorans CJ2 tartrate dehydrogenase YP_981254.1 1073857 D 365044 CDS YP_981255.1 121603926 4690124 1075146..1076060 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein 1076060 4690124 Pnap_1017 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981255.1 1075146 D 365044 CDS YP_981256.1 121603927 4686141 1076175..1077521 1 NC_008781.1 PFAM: MOFRL domain protein; KEGG: pol:Bpro_1434 hydroxypyruvate reductase; hydroxypyruvate reductase 1077521 4686141 Pnap_1018 Polaromonas naphthalenivorans CJ2 hydroxypyruvate reductase YP_981256.1 1076175 D 365044 CDS YP_981257.1 121603928 4686567 complement(1077549..1078553) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0842 hypothetical protein; hypothetical protein 1078553 4686567 Pnap_1019 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981257.1 1077549 R 365044 CDS YP_981258.1 121603929 4686194 complement(1078630..1079748) 1 NC_008781.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: bbr:BB1109 FMN-dependent dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 1079748 4686194 Pnap_1020 Polaromonas naphthalenivorans CJ2 FMN-dependent alpha-hydroxy acid dehydrogenase YP_981258.1 1078630 R 365044 CDS YP_981259.1 121603930 4686235 complement(1079782..1080753) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3347 uncharacterized protein UPF0065; hypothetical protein 1080753 4686235 Pnap_1021 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981259.1 1079782 R 365044 CDS YP_981260.1 121603931 4686625 complement(1080834..1082285) 1 NC_008781.1 PFAM: aldehyde dehydrogenase; KEGG: bja:blr6417 vanillin: NAD oxidoreductase; aldehyde dehydrogenase 1082285 4686625 Pnap_1022 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_981260.1 1080834 R 365044 CDS YP_981261.1 121603932 4686275 complement(1082381..1083970) 1 NC_008781.1 catalyzes the formation of benzaldehyde from benzoylformate; benzoylformate decarboxylase 1083970 4686275 Pnap_1023 Polaromonas naphthalenivorans CJ2 benzoylformate decarboxylase YP_981261.1 1082381 R 365044 CDS YP_981262.1 121603933 4686057 1084087..1085004 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2491 transcriptional regulator, LysR family; LysR family transcriptional regulator 1085004 4686057 Pnap_1024 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981262.1 1084087 D 365044 CDS YP_981263.1 121603934 4689477 complement(1085386..1085802) 1 NC_008781.1 KEGG: bbr:BB2499 hypothetical protein; hypothetical protein 1085802 4689477 Pnap_1025 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981263.1 1085386 R 365044 CDS YP_981264.1 121603935 4686708 1086041..1086853 1 NC_008781.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_2092 UbiE/COQ5 methyltransferase; type 11 methyltransferase 1086853 4686708 Pnap_1026 Polaromonas naphthalenivorans CJ2 type 11 methyltransferase YP_981264.1 1086041 D 365044 CDS YP_981265.1 121603936 4687796 1087316..1087987 1 NC_008781.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_1441 transcriptional regulator, XRE family; XRE family transcriptional regulator 1087987 4687796 Pnap_1027 Polaromonas naphthalenivorans CJ2 XRE family transcriptional regulator YP_981265.1 1087316 D 365044 CDS YP_981266.1 121603937 4686392 1088092..1088844 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: pol:Bpro_1440 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1088844 4686392 Pnap_1028 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_981266.1 1088092 D 365044 CDS YP_981267.1 121603938 4687265 1088888..1089538 1 NC_008781.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1439 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 1089538 4687265 Pnap_1029 Polaromonas naphthalenivorans CJ2 polar amino acid ABC transporter inner membrane subunit YP_981267.1 1088888 D 365044 CDS YP_981268.1 121603939 4688445 1089535..1090266 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1438 ABC transporter related; ABC transporter-like protein 1090266 4688445 Pnap_1030 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981268.1 1089535 D 365044 CDS YP_981269.1 121603940 4688735 1090277..1091572 1 NC_008781.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1437 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1091572 4688735 Pnap_1031 Polaromonas naphthalenivorans CJ2 FAD dependent oxidoreductase YP_981269.1 1090277 D 365044 CDS YP_981270.1 121603941 4689918 complement(1091655..1092281) 1 NC_008781.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_1916 hypothetical protein; type 11 methyltransferase 1092281 4689918 Pnap_1032 Polaromonas naphthalenivorans CJ2 type 11 methyltransferase YP_981270.1 1091655 R 365044 CDS YP_981271.1 121603942 4689360 1092586..1092918 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_2050 cytochrome c, class I; class I cytochrome c 1092918 4689360 Pnap_1033 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_981271.1 1092586 D 365044 CDS YP_981272.1 121603943 4688003 complement(1093000..1095399) 1 NC_008781.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pol:Bpro_1480 xanthine dehydrogenase; molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase 1095399 4688003 Pnap_1034 Polaromonas naphthalenivorans CJ2 molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase YP_981272.1 1093000 R 365044 CDS YP_981273.1 121603944 4689695 complement(1095396..1096916) 1 NC_008781.1 PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_1481 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase 1096916 4689695 Pnap_1035 Polaromonas naphthalenivorans CJ2 molybdopterin dehydrogenase YP_981273.1 1095396 R 365044 CDS YP_981274.1 121603945 4686906 1097180..1098754 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1483 ABC transporter related; ABC transporter-like protein 1098754 4686906 Pnap_1036 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981274.1 1097180 D 365044 CDS YP_981275.1 121603946 4686245 1098744..1099826 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1484 inner-membrane translocator; inner-membrane translocator 1099826 4686245 Pnap_1037 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_981275.1 1098744 D 365044 CDS YP_981276.1 121603947 4688714 1099826..1100746 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1485 inner-membrane translocator; inner-membrane translocator 1100746 4688714 Pnap_1038 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_981276.1 1099826 D 365044 CDS YP_981277.1 121603948 4689481 1100828..1101979 1 NC_008781.1 PFAM: basic membrane lipoprotein; KEGG: pol:Bpro_1486 basic membrane lipoprotein; basic membrane lipoprotein 1101979 4689481 Pnap_1039 Polaromonas naphthalenivorans CJ2 basic membrane lipoprotein YP_981277.1 1100828 D 365044 CDS YP_981278.1 121603949 4686552 1102076..1103116 1 NC_008781.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1103116 4686552 Pnap_1040 Polaromonas naphthalenivorans CJ2 adenosine deaminase YP_981278.1 1102076 D 365044 CDS YP_981279.1 121603950 4687474 1103146..1104432 1 NC_008781.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pol:Bpro_1488 protein of unknown function DUF1228; hypothetical protein 1104432 4687474 Pnap_1041 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981279.1 1103146 D 365044 CDS YP_981280.1 121603951 4688383 1104559..1104942 1 NC_008781.1 hypothetical protein 1104942 4688383 Pnap_1042 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981280.1 1104559 D 365044 CDS YP_981281.1 121603952 4690011 complement(1104974..1105960) 1 NC_008781.1 KEGG: dar:Daro_3465 hypothetical protein; hypothetical protein 1105960 4690011 Pnap_1043 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981281.1 1104974 R 365044 CDS YP_981282.1 121603953 4689502 1106306..1107391 1 NC_008781.1 PFAM: basic membrane lipoprotein; KEGG: rfr:Rfer_3296 basic membrane lipoprotein; basic membrane lipoprotein 1107391 4689502 Pnap_1044 Polaromonas naphthalenivorans CJ2 basic membrane lipoprotein YP_981282.1 1106306 D 365044 CDS YP_981283.1 121603954 4689817 1107388..1108023 1 NC_008781.1 KEGG: pol:Bpro_1494 hypothetical protein; hypothetical protein 1108023 4689817 Pnap_1045 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981283.1 1107388 D 365044 CDS YP_981284.1 121603955 4688806 1108020..1108400 1 NC_008781.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: pol:Bpro_1495 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; putative 6-pyruvoyl tetrahydropterin synthase 1108400 4688806 Pnap_1046 Polaromonas naphthalenivorans CJ2 putative 6-pyruvoyl tetrahydropterin synthase YP_981284.1 1108020 D 365044 CDS YP_981285.1 121603956 4688009 1108427..1109719 1 NC_008781.1 Catalyzes the deamination of guanine; guanine deaminase 1109719 4688009 Pnap_1047 Polaromonas naphthalenivorans CJ2 guanine deaminase YP_981285.1 1108427 D 365044 CDS YP_981286.1 121603957 4686087 complement(1109747..1110046) 1 NC_008781.1 hypothetical protein 1110046 4686087 Pnap_1048 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981286.1 1109747 R 365044 CDS YP_981287.1 121603958 4687561 1110192..1110791 1 NC_008781.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1110791 dcd 4687561 dcd Polaromonas naphthalenivorans CJ2 deoxycytidine triphosphate deaminase YP_981287.1 1110192 D 365044 CDS YP_981288.1 121603959 4688770 complement(1110888..1111763) 1 NC_008781.1 KEGG: rfr:Rfer_3771 integral membrane protein; integral membrane protein 1111763 4688770 Pnap_1050 Polaromonas naphthalenivorans CJ2 integral membrane protein YP_981288.1 1110888 R 365044 CDS YP_981289.1 121603960 4689470 complement(1111861..1112235) 1 NC_008781.1 KEGG: rpc:RPC_3825 hypothetical protein; hypothetical protein 1112235 4689470 Pnap_1051 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981289.1 1111861 R 365044 CDS YP_981290.1 121603961 4688874 complement(1112279..1112647) 1 NC_008781.1 PFAM: zinc finger, DksA/TraR C4-type; KEGG: rfr:Rfer_0615 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 1112647 4688874 Pnap_1052 Polaromonas naphthalenivorans CJ2 TraR/DksA family transcriptional regulator YP_981290.1 1112279 R 365044 CDS YP_981291.1 121603962 4688351 1112816..1113682 1 NC_008781.1 KEGG: rfr:Rfer_0009 integral membrane protein; integral membrane protein 1113682 4688351 Pnap_1053 Polaromonas naphthalenivorans CJ2 integral membrane protein YP_981291.1 1112816 D 365044 CDS YP_981292.1 121603963 4686982 1113682..1113894 1 NC_008781.1 KEGG: rfr:Rfer_0008 hypothetical protein; hypothetical protein 1113894 4686982 Pnap_1054 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981292.1 1113682 D 365044 CDS YP_981293.1 121603964 4688364 complement(1113950..1114636) 1 NC_008781.1 KEGG: tbd:Tbd_0127 outer membrane protein; outer membrane protein 1114636 4688364 Pnap_1055 Polaromonas naphthalenivorans CJ2 outer membrane protein YP_981293.1 1113950 R 365044 CDS YP_981294.1 121603965 4687907 1114965..1115357 1 NC_008781.1 KEGG: pol:Bpro_1510 hypothetical protein; hypothetical protein 1115357 4687907 Pnap_1056 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981294.1 1114965 D 365044 CDS YP_981295.1 121603966 4690015 1115542..1116432 1 NC_008781.1 PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: rfr:Rfer_2725 protein of unknown function, zinc metallopeptidase putative; hypothetical protein 1116432 4690015 Pnap_1057 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981295.1 1115542 D 365044 CDS YP_981296.1 121603967 4686146 complement(1116710..1117777) 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcn:Bcen_3232 transposase, IS605 OrfB; IS605 family transposase OrfB 1117777 4686146 Pnap_1058 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_981296.1 1116710 R 365044 CDS YP_981297.1 121603968 4686529 1118025..1119035 1 NC_008781.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: pol:Bpro_1892 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1119035 4686529 Pnap_1059 Polaromonas naphthalenivorans CJ2 UDP-glucose 4-epimerase YP_981297.1 1118025 D 365044 CDS YP_981298.1 121603969 4686222 complement(1119132..1120028) 1 NC_008781.1 PFAM: transglutaminase domain protein; KEGG: pol:Bpro_0068 transglutaminase-like; transglutaminase domain-containing protein 1120028 4686222 Pnap_1060 Polaromonas naphthalenivorans CJ2 transglutaminase domain-containing protein YP_981298.1 1119132 R 365044 CDS YP_981299.1 121603970 4686898 complement(1120192..1121136) 1 NC_008781.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rpc:RPC_0967 transglutaminase-like; transglutaminase domain-containing protein 1121136 4686898 Pnap_1061 Polaromonas naphthalenivorans CJ2 transglutaminase domain-containing protein YP_981299.1 1120192 R 365044 CDS YP_981300.1 121603971 4687162 complement(1121203..1122135) 1 NC_008781.1 KEGG: rba:RB2398 hypothetical protein; hypothetical protein 1122135 4687162 Pnap_1062 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981300.1 1121203 R 365044 CDS YP_981301.1 121603972 4689746 complement(1122230..1123228) 1 NC_008781.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pfl:PFL_0589 transglutaminase domain protein; transglutaminase domain-containing protein 1123228 4689746 Pnap_1063 Polaromonas naphthalenivorans CJ2 transglutaminase domain-containing protein YP_981301.1 1122230 R 365044 CDS YP_981302.1 121603973 4686323 complement(1123225..1125777) 1 NC_008781.1 PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3009 protein of unknown function DUF403; hypothetical protein 1125777 4686323 Pnap_1064 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981302.1 1123225 R 365044 CDS YP_981303.1 121603974 4686650 complement(1125856..1129221) 1 NC_008781.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rru:Rru_A2558 transglutaminase-like; transglutaminase domain-containing protein 1129221 4686650 Pnap_1065 Polaromonas naphthalenivorans CJ2 transglutaminase domain-containing protein YP_981303.1 1125856 R 365044 CDS YP_981304.1 121603975 4687260 complement(1129538..1131118) 1 NC_008781.1 KEGG: rfr:Rfer_3368 hypothetical protein; hypothetical protein 1131118 4687260 Pnap_1066 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981304.1 1129538 R 365044 CDS YP_981305.1 121603976 4686107 complement(1131671..1132678) 1 NC_008781.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1132678 4686107 Pnap_1067 Polaromonas naphthalenivorans CJ2 fructose-1,6-bisphosphatase YP_981305.1 1131671 R 365044 CDS YP_981306.1 121603977 4687527 complement(1132725..1135472) 1 NC_008781.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: pol:Bpro_1587 peptidase M1, alanyl aminopeptidase; aminopeptidase N 1135472 pepN 4687527 pepN Polaromonas naphthalenivorans CJ2 aminopeptidase N YP_981306.1 1132725 R 365044 CDS YP_981307.1 121603978 4687669 complement(1135526..1136569) 1 NC_008781.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: tbd:Tbd_0921 peptide chain release factor 2; peptide chain release factor 2 1136569 4687669 Pnap_1069 Polaromonas naphthalenivorans CJ2 peptide chain release factor 2 YP_981307.1 1135526 R 365044 CDS YP_981308.1 121603979 4687661 complement(1136720..1137928) 1 NC_008781.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: psb:Psyr_2448 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal; response regulator receiver sensor signal transduction histidine kinase 1137928 4687661 Pnap_1070 Polaromonas naphthalenivorans CJ2 response regulator receiver sensor signal transduction histidine kinase YP_981308.1 1136720 R 365044 CDS YP_981309.1 121603980 4688155 complement(1137922..1138521) 1 NC_008781.1 PFAM: CheB methylesterase; KEGG: pfl:PFL_3249 methylesterase, CheB-like; CheB methylesterase 1138521 4688155 Pnap_1071 Polaromonas naphthalenivorans CJ2 CheB methylesterase YP_981309.1 1137922 R 365044 CDS YP_981310.1 121603981 4687904 complement(1138518..1139429) 1 NC_008781.1 PFAM: MCP methyltransferase, CheR-type; KEGG: pfl:PFL_3250 chemotaxis protein methyltransferase, CheR-like; chemotaxis protein CheR 1139429 4687904 Pnap_1072 Polaromonas naphthalenivorans CJ2 chemotaxis protein CheR YP_981310.1 1138518 R 365044 CDS YP_981311.1 121603982 4686702 complement(1139432..1142908) 1 NC_008781.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: pfl:PFL_3251 sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase 1142908 4686702 Pnap_1073 Polaromonas naphthalenivorans CJ2 multi-sensor hybrid histidine kinase YP_981311.1 1139432 R 365044 CDS YP_981312.1 121603983 4688487 complement(1142985..1143926) 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1589 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1143926 4688487 Pnap_1074 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold protein YP_981312.1 1142985 R 365044 CDS YP_981313.1 121603984 4688792 complement(1144192..1144854) 1 NC_008781.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: pol:Bpro_1591 OmpA/MotB; OmpA/MotB domain-containing protein 1144854 4688792 Pnap_1075 Polaromonas naphthalenivorans CJ2 OmpA/MotB domain-containing protein YP_981313.1 1144192 R 365044 CDS YP_981314.1 121603985 4690016 1145023..1146141 1 NC_008781.1 PFAM: aldo/keto reductase; KEGG: pol:Bpro_1592 aldo/keto reductase; aldo/keto reductase 1146141 4690016 Pnap_1076 Polaromonas naphthalenivorans CJ2 aldo/keto reductase YP_981314.1 1145023 D 365044 CDS YP_981315.1 121603986 4689864 1146167..1146658 1 NC_008781.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pol:Bpro_1593 hypothetical protein; ybaK/ebsC protein 1146658 4689864 Pnap_1077 Polaromonas naphthalenivorans CJ2 ybaK/ebsC protein YP_981315.1 1146167 D 365044 CDS YP_981316.1 121603987 4689757 1146677..1147327 1 NC_008781.1 PFAM: protein of unknown function DUF205; KEGG: pol:Bpro_1594 protein of unknown function DUF205; hypothetical protein 1147327 4689757 Pnap_1078 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981316.1 1146677 D 365044 CDS YP_981317.1 121603988 4689835 complement(1147330..1147986) 1 NC_008781.1 KEGG: pol:Bpro_1595 hypothetical protein; hypothetical protein 1147986 4689835 Pnap_1079 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981317.1 1147330 R 365044 CDS YP_981318.1 121603989 4689599 complement(1147992..1148483) 1 NC_008781.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 1148483 4689599 Pnap_1080 Polaromonas naphthalenivorans CJ2 putative nucleotide-binding protein YP_981318.1 1147992 R 365044 CDS YP_981319.1 121603990 4689274 1148535..1149587 1 NC_008781.1 KEGG: pol:Bpro_1597 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 1149587 4689274 Pnap_1081 Polaromonas naphthalenivorans CJ2 UDP-N-acetylenolpyruvoylglucosamine reductase YP_981319.1 1148535 D 365044 CDS YP_981320.1 121603991 4689212 complement(1149665..1151002) 1 NC_008781.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 1151002 4689212 Pnap_1082 Polaromonas naphthalenivorans CJ2 argininosuccinate synthase YP_981320.1 1149665 R 365044 CDS YP_981321.1 121603992 4689418 complement(1151036..1151362) 1 NC_008781.1 PFAM: protein of unknown function DUF1255; KEGG: pol:Bpro_1600 protein of unknown function DUF1255; hypothetical protein 1151362 4689418 Pnap_1083 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981321.1 1151036 R 365044 CDS YP_981322.1 121603993 4689358 1151498..1152082 1 NC_008781.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rso:RSc2361 probable RNA polymerase sigma-e factor sigma-24 homolog transcription regulator protein; ECF subfamily RNA polymerase sigma-24 factor 1152082 4689358 Pnap_1084 Polaromonas naphthalenivorans CJ2 ECF subfamily RNA polymerase sigma-24 factor YP_981322.1 1151498 D 365044 CDS YP_981323.1 121603994 4688596 1152079..1152861 1 NC_008781.1 KEGG: rso:RSc2362 probable transmembrane protein; hypothetical protein 1152861 4688596 Pnap_1085 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981323.1 1152079 D 365044 CDS YP_981324.1 121603995 4688511 complement(1152920..1153636) 1 NC_008781.1 PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_1601 17 kDa surface antigen; 17 kDa surface antigen 1153636 4688511 Pnap_1086 Polaromonas naphthalenivorans CJ2 17 kDa surface antigen YP_981324.1 1152920 R 365044 CDS YP_981325.1 121603996 4687882 complement(1153767..1154111) 1 NC_008781.1 PFAM: arsenate reductase and related; KEGG: pol:Bpro_1602 hypothetical protein; arsenate reductase-like protein 1154111 4687882 Pnap_1087 Polaromonas naphthalenivorans CJ2 arsenate reductase-like protein YP_981325.1 1153767 R 365044 CDS YP_981326.1 121603997 4688047 1154205..1155185 1 NC_008781.1 KEGG: pol:Bpro_1603 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 1155185 4688047 Pnap_1088 Polaromonas naphthalenivorans CJ2 proline iminopeptidase YP_981326.1 1154205 D 365044 CDS YP_981327.1 121603998 4687622 1155192..1156553 1 NC_008781.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1604 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 1156553 4687622 Pnap_1089 Polaromonas naphthalenivorans CJ2 bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_981327.1 1155192 D 365044 CDS YP_981328.1 121603999 4687488 1156642..1157640 1 NC_008781.1 PFAM: Sporulation domain protein; KEGG: pol:Bpro_1605 sporulation related; sporulation domain-containing protein 1157640 4687488 Pnap_1090 Polaromonas naphthalenivorans CJ2 sporulation domain-containing protein YP_981328.1 1156642 D 365044 CDS YP_981329.1 121604000 4687815 1157656..1158141 1 NC_008781.1 PFAM: Colicin V production protein; KEGG: pol:Bpro_1606 colicin V production protein; colicin V production protein 1158141 4687815 Pnap_1091 Polaromonas naphthalenivorans CJ2 colicin V production protein YP_981329.1 1157656 D 365044 CDS YP_981330.1 121604001 4686555 1158187..1159716 1 NC_008781.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1159716 4686555 Pnap_1092 Polaromonas naphthalenivorans CJ2 amidophosphoribosyltransferase YP_981330.1 1158187 D 365044 CDS YP_981331.1 121604002 4687346 1159718..1160932 1 NC_008781.1 KEGG: rfr:Rfer_2682 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-succinylhomoserine sulfhydrylase 1160932 4687346 Pnap_1093 Polaromonas naphthalenivorans CJ2 O-succinylhomoserine sulfhydrylase YP_981331.1 1159718 D 365044 CDS YP_981332.1 121604003 4687397 1160929..1162323 1 NC_008781.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1162323 gltX 4687397 gltX Polaromonas naphthalenivorans CJ2 glutamyl-tRNA synthetase YP_981332.1 1160929 D 365044 CDS YP_981333.1 121604004 4686648 complement(1163231..1164205) 1 NC_008781.1 KEGG: nha:Nham_2838 zinc finger, SWIM-type; CDGSH-type zinc finger protein 1164205 4686648 Pnap_1095 Polaromonas naphthalenivorans CJ2 CDGSH-type zinc finger protein YP_981333.1 1163231 R 365044 CDS YP_981334.1 121604005 4687847 complement(1164225..1166924) 1 NC_008781.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nha:Nham_2839 SNF2-related; SNF2-like protein 1166924 4687847 Pnap_1096 Polaromonas naphthalenivorans CJ2 SNF2-like protein YP_981334.1 1164225 R 365044 CDS YP_981335.1 121604006 4689448 complement(1167002..1167424) 1 NC_008781.1 PFAM: Ion transport 2 domain protein,; KEGG: pol:Bpro_3379 ion transport 2; Ion transport 2 domain-containing protein 1167424 4689448 Pnap_1097 Polaromonas naphthalenivorans CJ2 Ion transport 2 domain-containing protein YP_981335.1 1167002 R 365044 CDS YP_981336.1 121604007 4689537 1167496..1168161 1 NC_008781.1 PFAM: protein of unknown function DUF1345; KEGG: pol:Bpro_1635 protein of unknown function DUF1345; hypothetical protein 1168161 4689537 Pnap_1098 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981336.1 1167496 D 365044 CDS YP_981337.1 121604008 4689259 complement(1168175..1169107) 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_1636 protein of unknown function DUF6, transmembrane; hypothetical protein 1169107 4689259 Pnap_1099 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981337.1 1168175 R 365044 CDS YP_981338.1 121604009 4689867 complement(1169125..1169649) 1 NC_008781.1 KEGG: pol:Bpro_1637 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylguanine DNA methyltransferase, ribonuclease domain protein; methylated-DNA--protein-cysteine methyltransferase 1169649 4689867 Pnap_1100 Polaromonas naphthalenivorans CJ2 methylated-DNA--protein-cysteine methyltransferase YP_981338.1 1169125 R 365044 CDS YP_981339.1 121604010 4688485 complement(1169769..1171304) 1 NC_008781.1 PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: pol:Bpro_1638 transcriptional regulator, AraC family; Ada metal-binding domain-containing protein 1171304 4688485 Pnap_1101 Polaromonas naphthalenivorans CJ2 Ada metal-binding domain-containing protein YP_981339.1 1169769 R 365044 CDS YP_981340.1 121604011 4688284 complement(1171388..1172893) 1 NC_008781.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 1172893 4688284 Pnap_1102 Polaromonas naphthalenivorans CJ2 4-alpha-glucanotransferase YP_981340.1 1171388 R 365044 CDS YP_981341.1 121604012 4687771 complement(1172904..1174991) 1 NC_008781.1 KEGG: gbe:GbCGDNIH1_2172 isoamylase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 1174991 4687771 Pnap_1103 Polaromonas naphthalenivorans CJ2 glycogen debranching protein GlgX YP_981341.1 1172904 R 365044 CDS YP_981342.1 121604013 4686916 complement(1174988..1177177) 1 NC_008781.1 KEGG: yps:YPTB3787 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain; 1,4-alpha-glucan branching protein 1177177 4686916 Pnap_1104 Polaromonas naphthalenivorans CJ2 1,4-alpha-glucan branching protein YP_981342.1 1174988 R 365044 CDS YP_981343.1 121604014 4686759 complement(1177213..1179639) 1 NC_008781.1 KEGG: rfr:Rfer_0511 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 1179639 4686759 Pnap_1105 Polaromonas naphthalenivorans CJ2 glycogen/starch/alpha-glucan phosphorylase YP_981343.1 1177213 R 365044 CDS YP_981344.1 121604015 4686863 1179915..1181183 1 NC_008781.1 KEGG: stt:t3984 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate adenylyltransferase 1181183 4686863 Pnap_1106 Polaromonas naphthalenivorans CJ2 glucose-1-phosphate adenylyltransferase YP_981344.1 1179915 D 365044 CDS YP_981345.1 121604016 4687589 1181180..1182664 1 NC_008781.1 TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: bxe:Bxe_A2935 putative glycogen synthase; ADP-glucose type glycogen/starch synthase 1182664 4687589 Pnap_1107 Polaromonas naphthalenivorans CJ2 ADP-glucose type glycogen/starch synthase YP_981345.1 1181180 D 365044 CDS YP_981346.1 121604017 4688382 1182815..1184197 1 NC_008781.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pol:Bpro_1639 phosphomannomutase; phosphomannomutase 1184197 4688382 Pnap_1108 Polaromonas naphthalenivorans CJ2 phosphomannomutase YP_981346.1 1182815 D 365044 CDS YP_981347.1 121604018 4688450 1184262..1185386 1 NC_008781.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; KEGG: pol:Bpro_1640 lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase I 1185386 4688450 Pnap_1109 Polaromonas naphthalenivorans CJ2 lipopolysaccharide heptosyltransferase I YP_981347.1 1184262 D 365044 CDS YP_981348.1 121604019 4689938 1185383..1186720 1 NC_008781.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: pol:Bpro_1641 three-deoxy-D-manno-octulosonic-acid transferase-like; 3-deoxy-D-manno-octulosonic-acid transferase 1186720 4689938 Pnap_1110 Polaromonas naphthalenivorans CJ2 3-deoxy-D-manno-octulosonic-acid transferase YP_981348.1 1185383 D 365044 CDS YP_981349.1 121604020 4688134 1186841..1187227 1 NC_008781.1 PFAM: protein of unknown function DUF1486; KEGG: reu:Reut_A1634 hypothetical protein; hypothetical protein 1187227 4688134 Pnap_1111 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981349.1 1186841 D 365044 CDS YP_981350.1 121604021 4687438 1187958..1188752 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3788 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1188752 4687438 Pnap_1113 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_981350.1 1187958 D 365044 CDS YP_981351.1 121604022 4690123 1188900..1189157 1 NC_008781.1 hypothetical protein 1189157 4690123 Pnap_1114 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981351.1 1188900 D 365044 CDS YP_981352.1 121604023 4686086 1189234..1189602 1 NC_008781.1 hypothetical protein 1189602 4686086 Pnap_1115 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981352.1 1189234 D 365044 CDS YP_981353.1 121604024 4688034 complement(1189617..1190321) 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_0167 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1190321 4688034 Pnap_1116 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_981353.1 1189617 R 365044 CDS YP_981354.1 121604025 4687945 complement(1190318..1191217) 1 NC_008781.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1191217 phhA 4687945 phhA Polaromonas naphthalenivorans CJ2 phenylalanine 4-monooxygenase YP_981354.1 1190318 R 365044 CDS YP_981355.1 121604026 4686994 complement(1191242..1192516) 1 NC_008781.1 KEGG: pol:Bpro_2996 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetase 1192516 4686994 Pnap_1118 Polaromonas naphthalenivorans CJ2 fumarylacetoacetase YP_981355.1 1191242 R 365044 CDS YP_981356.1 121604027 4687514 complement(1192513..1193052) 1 NC_008781.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO0680 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 1193052 4687514 Pnap_1119 Polaromonas naphthalenivorans CJ2 glyoxalase/bleomycin resistance protein/dioxygenase YP_981356.1 1192513 R 365044 CDS YP_981357.1 121604028 4688857 complement(1193049..1194131) 1 NC_008781.1 KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1194131 4688857 Pnap_1120 Polaromonas naphthalenivorans CJ2 4-hydroxyphenylpyruvate dioxygenase YP_981357.1 1193049 R 365044 CDS YP_981358.1 121604029 4687395 complement(1194160..1195152) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_C6250 hypothetical protein; hypothetical protein 1195152 4687395 Pnap_1121 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981358.1 1194160 R 365044 CDS YP_981359.1 121604030 4688831 complement(1195203..1196363) 1 NC_008781.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_C6960 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1196363 4688831 Pnap_1122 Polaromonas naphthalenivorans CJ2 L-carnitine dehydratase/bile acid-inducible protein F YP_981359.1 1195203 R 365044 CDS YP_981360.1 121604031 4689431 complement(1196398..1197372) 1 NC_008781.1 PFAM: pyruvate carboxyltransferase; KEGG: reu:Reut_C6248 pyruvate carboxyltransferase; pyruvate carboxyltransferase 1197372 4689431 Pnap_1123 Polaromonas naphthalenivorans CJ2 pyruvate carboxyltransferase YP_981360.1 1196398 R 365044 CDS YP_981361.1 121604032 4688964 1197525..1198445 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2354 transcriptional regulator, LysR family; LysR family transcriptional regulator 1198445 4688964 Pnap_1124 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981361.1 1197525 D 365044 CDS YP_981362.1 121604033 4687505 1198616..1199128 1 NC_008781.1 hypothetical protein 1199128 4687505 Pnap_1125 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981362.1 1198616 D 365044 CDS YP_981363.1 121604034 4687745 complement(1199248..1200600) 1 NC_008781.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 1200600 4687745 Pnap_1126 Polaromonas naphthalenivorans CJ2 TolC family type I secretion outer membrane protein YP_981363.1 1199248 R 365044 CDS YP_981364.1 121604035 4688015 complement(1200660..1201025) 1 NC_008781.1 SMART: Rhodanese domain protein; KEGG: pol:Bpro_1665 rhodanese-like; rhodanese domain-containing protein 1201025 4688015 Pnap_1127 Polaromonas naphthalenivorans CJ2 rhodanese domain-containing protein YP_981364.1 1200660 R 365044 CDS YP_981365.1 121604036 4688005 complement(1201054..1201743) 1 NC_008781.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; O-methyltransferase, family 3; Methyltransferase type 11; KEGG: pol:Bpro_1666 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1201743 4688005 Pnap_1128 Polaromonas naphthalenivorans CJ2 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_981365.1 1201054 R 365044 CDS YP_981366.1 121604037 4688071 complement(1201883..1202578) 1 NC_008781.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_1669 transcriptional regulator, TetR family; TetR family transcriptional regulator 1202578 4688071 Pnap_1129 Polaromonas naphthalenivorans CJ2 TetR family transcriptional regulator YP_981366.1 1201883 R 365044 CDS YP_981367.1 121604038 4688058 complement(1202668..1204002) 1 NC_008781.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_3421 glucarate dehydratase; glucarate dehydratase 1204002 4688058 Pnap_1130 Polaromonas naphthalenivorans CJ2 glucarate dehydratase YP_981367.1 1202668 R 365044 CDS YP_981368.1 121604039 4688130 complement(1204180..1205178) 1 NC_008781.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_3418 transcriptional regulator, LacI family; regulatory protein, LacI 1205178 4688130 Pnap_1131 Polaromonas naphthalenivorans CJ2 regulatory protein, LacI YP_981368.1 1204180 R 365044 CDS YP_981369.1 121604040 4688123 complement(1205264..1206043) 1 NC_008781.1 PFAM: protein of unknown function DUF218; KEGG: pol:Bpro_1670 protein of unknown function DUF218; hypothetical protein 1206043 4688123 Pnap_1132 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981369.1 1205264 R 365044 CDS YP_981370.1 121604041 4688757 complement(1206105..1207301) 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_1671 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1207301 4688757 Pnap_1133 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_981370.1 1206105 R 365044 CDS YP_981371.1 121604042 4687366 1207438..1208322 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_1672 transcriptional regulator, LysR family; LysR family transcriptional regulator 1208322 4687366 Pnap_1134 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981371.1 1207438 D 365044 CDS YP_981372.1 121604043 4688198 1208362..1208901 1 NC_008781.1 KEGG: pol:Bpro_1674 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 1208901 4688198 Pnap_1135 Polaromonas naphthalenivorans CJ2 peptide methionine sulfoxide reductase YP_981372.1 1208362 D 365044 CDS YP_981373.1 121604044 4687885 complement(1208931..1209989) 1 NC_008781.1 PFAM: transposase, IS4 family protein; KEGG: lpf:lpl2868 hypothetical protein; transposase, IS4 family protein 1209989 4687885 Pnap_1136 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_981373.1 1208931 R 365044 CDS YP_981374.1 121604045 4688708 complement(1210027..1210284) 1 NC_008781.1 hypothetical protein 1210284 4688708 Pnap_1137 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981374.1 1210027 R 365044 CDS YP_981375.1 121604046 4688723 complement(1210656..1211672) 1 NC_008781.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_5572 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1211672 4688723 Pnap_1138 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_981375.1 1210656 R 365044 CDS YP_981376.1 121604047 4688208 complement(1211790..1212032) 1 NC_008781.1 KEGG: cef:CE0351 hypothetical protein; hypothetical protein 1212032 4688208 Pnap_1139 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981376.1 1211790 R 365044 CDS YP_981377.1 121604048 4688227 complement(1212035..1213084) 1 NC_008781.1 KEGG: psp:PSPPH_4785 probable ATP-binding protein; putative ATP-binding protein 1213084 4688227 Pnap_1140 Polaromonas naphthalenivorans CJ2 putative ATP-binding protein YP_981377.1 1212035 R 365044 CDS YP_981378.1 121604049 4689435 complement(1213315..1213767) 1 NC_008781.1 PFAM: CBS domain containing protein; KEGG: rfr:Rfer_0389 putative signal-transduction protein with CBS domains; signal-transduction protein 1213767 4689435 Pnap_1141 Polaromonas naphthalenivorans CJ2 signal-transduction protein YP_981378.1 1213315 R 365044 CDS YP_981379.1 121604050 4688808 complement(1213903..1214826) 1 NC_008781.1 PFAM: periplasmic solute binding protein; KEGG: rfr:Rfer_2051 periplasmic solute binding protein; periplasmic solute-binding protein 1214826 4688808 Pnap_1142 Polaromonas naphthalenivorans CJ2 periplasmic solute-binding protein YP_981379.1 1213903 R 365044 CDS YP_981380.1 121604051 4688801 complement(1214877..1215761) 1 NC_008781.1 PFAM: ABC-3 protein; KEGG: rfr:Rfer_2052 ABC-3; ABC-3 protein 1215761 4688801 Pnap_1143 Polaromonas naphthalenivorans CJ2 ABC-3 protein YP_981380.1 1214877 R 365044 CDS YP_981381.1 121604052 4688773 complement(1215758..1216528) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2053 ABC transporter related; ABC transporter-like protein 1216528 4688773 Pnap_1144 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981381.1 1215758 R 365044 CDS YP_981382.1 121604053 4688601 1216802..1217308 1 NC_008781.1 KEGG: pol:Bpro_1677 putative ferric uptake regulator, FUR family; ferric uptake regulator family protein 1217308 4688601 Pnap_1145 Polaromonas naphthalenivorans CJ2 ferric uptake regulator family protein YP_981382.1 1216802 D 365044 CDS YP_981383.1 121604054 4688608 1217305..1217985 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1678 ABC transporter related; ABC transporter-like protein 1217985 4688608 Pnap_1146 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981383.1 1217305 D 365044 CDS YP_981384.1 121604055 4688822 1217982..1219184 1 NC_008781.1 PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_1679 protein of unknown function DUF214; hypothetical protein 1219184 4688822 Pnap_1147 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981384.1 1217982 D 365044 CDS YP_981385.1 121604056 4688852 1219203..1219469 1 NC_008781.1 KEGG: pol:Bpro_1680 hypothetical protein; hypothetical protein 1219469 4688852 Pnap_1148 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981385.1 1219203 D 365044 CDS YP_981386.1 121604057 4689402 1219519..1220109 1 NC_008781.1 KEGG: pol:Bpro_1681 hypothetical protein; hypothetical protein 1220109 4689402 Pnap_1149 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981386.1 1219519 D 365044 CDS YP_981387.1 121604058 4688894 1220324..1220695 1 NC_008781.1 PFAM: protein of unknown function DUF486; KEGG: pol:Bpro_1685 protein of unknown function DUF486; hypothetical protein 1220695 4688894 Pnap_1150 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981387.1 1220324 D 365044 CDS YP_981388.1 121604059 4688904 1220887..1221534 1 NC_008781.1 PFAM: protein of unknown function DUF47; KEGG: pol:Bpro_1686 protein of unknown function DUF47; hypothetical protein 1221534 4688904 Pnap_1151 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981388.1 1220887 D 365044 CDS YP_981389.1 121604060 4689369 1221567..1222577 1 NC_008781.1 PFAM: phosphate transporter; KEGG: pol:Bpro_1687 phosphate transporter; phosphate transporter 1222577 4689369 Pnap_1152 Polaromonas naphthalenivorans CJ2 phosphate transporter YP_981389.1 1221567 D 365044 CDS YP_981390.1 121604061 4688676 complement(1222658..1225231) 1 NC_008781.1 PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_3224 protein of unknown function DUF214; hypothetical protein 1225231 4688676 Pnap_1153 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981390.1 1222658 R 365044 CDS YP_981391.1 121604062 4687881 complement(1225252..1225899) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3214 ABC transporter related; ABC transporter-like protein 1225899 4687881 Pnap_1154 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981391.1 1225252 R 365044 CDS YP_981392.1 121604063 4689422 complement(1225896..1226891) 1 NC_008781.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1226891 miaA 4689422 miaA Polaromonas naphthalenivorans CJ2 tRNA delta(2)-isopentenylpyrophosphate transferase YP_981392.1 1225896 R 365044 CDS YP_981393.1 121604064 4689492 complement(1226937..1227821) 1 NC_008781.1 KEGG: pol:Bpro_3210 hypothetical protein; hypothetical protein 1227821 4689492 Pnap_1156 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981393.1 1226937 R 365044 CDS YP_981394.1 121604065 4689533 complement(1227891..1229825) 1 NC_008781.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: pol:Bpro_3209 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 1229825 4689533 Pnap_1157 Polaromonas naphthalenivorans CJ2 DNA mismatch repair protein MutL YP_981394.1 1227891 R 365044 CDS YP_981395.1 121604066 4689199 complement(1229927..1230823) 1 NC_008781.1 KEGG: pol:Bpro_4520 conserved hypothetical protein; putative signal peptide; putative signal peptide 1230823 4689199 Pnap_1158 Polaromonas naphthalenivorans CJ2 putative signal peptide YP_981395.1 1229927 R 365044 CDS YP_981396.1 121604067 4689508 complement(1230875..1232059) 1 NC_008781.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 1232059 4689508 Pnap_1159 Polaromonas naphthalenivorans CJ2 beta-ketothiolase YP_981396.1 1230875 R 365044 CDS YP_981397.1 121604068 4689512 complement(1232102..1233364) 1 NC_008781.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: mag:amb2306 putative GTPase; cobalamin synthesis protein, P47K 1233364 4689512 Pnap_1160 Polaromonas naphthalenivorans CJ2 cobalamin synthesis protein, P47K YP_981397.1 1232102 R 365044 CDS YP_981398.1 121604069 4689239 complement(1233379..1234257) 1 NC_008781.1 KEGG: bur:Bcep18194_B1208 hypothetical protein; hypothetical protein 1234257 4689239 Pnap_1161 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981398.1 1233379 R 365044 CDS YP_981399.1 121604070 4689168 complement(1234254..1236530) 1 NC_008781.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: fra:Francci3_2242 hydantoinase B/oxoprolinase; hydantoinase B/oxoprolinase 1236530 4689168 Pnap_1162 Polaromonas naphthalenivorans CJ2 hydantoinase B/oxoprolinase YP_981399.1 1234254 R 365044 CDS YP_981400.1 121604071 4689087 complement(1236575..1238710) 1 NC_008781.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bur:Bcep18194_B1206 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase 1238710 4689087 Pnap_1163 Polaromonas naphthalenivorans CJ2 5-oxoprolinase YP_981400.1 1236575 R 365044 CDS YP_981401.1 121604072 4689538 complement(1238741..1239142) 1 NC_008781.1 KEGG: bur:Bcep18194_B1205 acetone carboxylase gamma subunit-like; acetone carboxylase subunit gamma-like protein 1239142 4689538 Pnap_1164 Polaromonas naphthalenivorans CJ2 acetone carboxylase subunit gamma-like protein YP_981401.1 1238741 R 365044 CDS YP_981402.1 121604073 4689544 complement(1239148..1241085) 1 NC_008781.1 PFAM: Hydantoinase/oxoprolinase; KEGG: bur:Bcep18194_B1204 hydantoinase/oxoprolinase; 5-oxoprolinase 1241085 4689544 Pnap_1165 Polaromonas naphthalenivorans CJ2 5-oxoprolinase YP_981402.1 1239148 R 365044 CDS YP_981403.1 121604074 4689260 complement(1241752..1243779) 1 NC_008781.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: eba:ebA4722 sigma-54 dependent transcriptional activator; Fis family GAF modulated sigma54 specific transcriptional regulator 1243779 4689260 Pnap_1166 Polaromonas naphthalenivorans CJ2 Fis family GAF modulated sigma54 specific transcriptional regulator YP_981403.1 1241752 R 365044 CDS YP_981404.1 121604075 4690096 1244190..1244849 1 NC_008781.1 KEGG: pol:Bpro_3208 DedA protein (DSG-1 protein); DedA protein 1244849 4690096 Pnap_1167 Polaromonas naphthalenivorans CJ2 DedA protein YP_981404.1 1244190 D 365044 CDS YP_981405.1 121604076 4690101 1244869..1246719 1 NC_008781.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr1288 probable long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 1246719 4690101 Pnap_1168 Polaromonas naphthalenivorans CJ2 AMP-dependent synthetase and ligase YP_981405.1 1244869 D 365044 CDS YP_981406.1 121604077 4689301 complement(1246875..1247132) 1 NC_008781.1 PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3200 17 kDa surface antigen; 17 kDa surface antigen 1247132 4689301 Pnap_1169 Polaromonas naphthalenivorans CJ2 17 kDa surface antigen YP_981406.1 1246875 R 365044 CDS YP_981407.1 121604078 4690081 complement(1247259..1248818) 1 NC_008781.1 PFAM: cell wall hydrolase/autolysin; KEGG: pol:Bpro_3199 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 1248818 4690081 Pnap_1170 Polaromonas naphthalenivorans CJ2 N-acetylmuramoyl-L-alanine amidase YP_981407.1 1247259 R 365044 CDS YP_981408.1 121604079 4690024 complement(1248815..1249333) 1 NC_008781.1 PFAM: protein of unknown function UPF0079; KEGG: pol:Bpro_3198 protein of unknown function UPF0079; hypothetical protein 1249333 4690024 Pnap_1171 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981408.1 1248815 R 365044 CDS YP_981409.1 121604080 4690115 1249400..1250398 1 NC_008781.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pol:Bpro_3197 4Fe-4S cluster binding; putative iron-sulfur cluster-binding protein 1250398 4690115 Pnap_1172 Polaromonas naphthalenivorans CJ2 putative iron-sulfur cluster-binding protein YP_981409.1 1249400 D 365044 CDS YP_981410.1 121604081 4690134 complement(1250507..1251499) 1 NC_008781.1 PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_3195 auxin efflux carrier; auxin efflux carrier 1251499 4690134 Pnap_1173 Polaromonas naphthalenivorans CJ2 auxin efflux carrier YP_981410.1 1250507 R 365044 CDS YP_981411.1 121604082 4690201 1251588..1252490 1 NC_008781.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pol:Bpro_3191 tyrosine recombinase XerD; tyrosine recombinase XerD 1252490 4690201 Pnap_1174 Polaromonas naphthalenivorans CJ2 tyrosine recombinase XerD YP_981411.1 1251588 D 365044 CDS YP_981412.1 121604083 4689801 complement(1252521..1253786) 1 NC_008781.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_3190 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1253786 4689801 Pnap_1175 Polaromonas naphthalenivorans CJ2 cyclopropane-fatty-acyl-phospholipid synthase YP_981412.1 1252521 R 365044 CDS YP_981413.1 121604084 4690166 complement(1253895..1254227) 1 NC_008781.1 KEGG: pol:Bpro_4705 hypothetical protein; hypothetical protein 1254227 4690166 Pnap_1176 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981413.1 1253895 R 365044 CDS YP_981414.1 121604085 4690191 complement(1254395..1255297) 1 NC_008781.1 PFAM: protein of unknown function DUF455; KEGG: pol:Bpro_3189 protein of unknown function DUF455; hypothetical protein 1255297 4690191 Pnap_1177 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981414.1 1254395 R 365044 CDS YP_981415.1 121604086 4689826 1255333..1255857 1 NC_008781.1 KEGG: pol:Bpro_3188 transferase hexapeptide repeat; hexapaptide repeat-containing transferase 1255857 4689826 Pnap_1178 Polaromonas naphthalenivorans CJ2 hexapaptide repeat-containing transferase YP_981415.1 1255333 D 365044 CDS YP_981416.1 121604087 4689934 1256017..1256985 1 NC_008781.1 PFAM: Hsp33 protein; KEGG: pol:Bpro_3187 HSP33 protein; Hsp33 protein 1256985 4689934 Pnap_1179 Polaromonas naphthalenivorans CJ2 Hsp33 protein YP_981416.1 1256017 D 365044 CDS YP_981417.1 121604088 4689969 complement(1257043..1258452) 1 NC_008781.1 KEGG: xfa:XF1486 hypothetical protein; hypothetical protein 1258452 4689969 Pnap_1180 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981417.1 1257043 R 365044 CDS YP_981418.1 121604089 4689962 complement(1258583..1259140) 1 NC_008781.1 KEGG: pol:Bpro_3186 hypothetical protein; hypothetical protein 1259140 4689962 Pnap_1181 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981418.1 1258583 R 365044 CDS YP_981419.1 121604090 4689831 complement(1259192..1259434) 1 NC_008781.1 PFAM: Septum formation initiator; KEGG: pol:Bpro_3185 septum formation initiator; septum formation initiator 1259434 4689831 Pnap_1182 Polaromonas naphthalenivorans CJ2 septum formation initiator YP_981419.1 1259192 R 365044 CDS YP_981420.1 121604091 4689856 complement(1259486..1260772) 1 NC_008781.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1260772 eno 4689856 eno Polaromonas naphthalenivorans CJ2 phosphopyruvate hydratase YP_981420.1 1259486 R 365044 CDS YP_981421.1 121604092 4689703 complement(1260910..1261767) 1 NC_008781.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1261767 4689703 Pnap_1184 Polaromonas naphthalenivorans CJ2 2-dehydro-3-deoxyphosphooctonate aldolase YP_981421.1 1260910 R 365044 CDS YP_981422.1 121604093 4689688 complement(1261764..1263464) 1 NC_008781.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1263464 pyrG 4689688 pyrG Polaromonas naphthalenivorans CJ2 CTP synthetase YP_981422.1 1261764 R 365044 CDS YP_981423.1 121604094 4689676 1263653..1264933 1 NC_008781.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: pol:Bpro_3180 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1264933 4689676 Pnap_1186 Polaromonas naphthalenivorans CJ2 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_981423.1 1263653 D 365044 CDS YP_981424.1 121604095 4687950 1265364..1265810 1 NC_008781.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1265810 dut 4687950 dut Polaromonas naphthalenivorans CJ2 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_981424.1 1265364 D 365044 CDS YP_981425.1 121604096 4689674 1266020..1266580 1 NC_008781.1 PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3177 17 kDa surface antigen; 17 kDa surface antigen 1266580 4689674 Pnap_1189 Polaromonas naphthalenivorans CJ2 17 kDa surface antigen YP_981425.1 1266020 D 365044 CDS YP_981426.1 121604097 4689217 complement(1266659..1267183) 1 NC_008781.1 KEGG: pol:Bpro_3176 putative fkbp-type peptidyl-prolyl cis-trans isomerase (rotamase) protein; putative fkbp-type peptidyl-prolyl cis-trans isomerase (rotamase) protein 1267183 4689217 Pnap_1190 Polaromonas naphthalenivorans CJ2 putative fkbp-type peptidyl-prolyl cis-trans isomerase (rotamase) protein YP_981426.1 1266659 R 365044 CDS YP_981427.1 121604098 4689773 1267198..1268439 1 NC_008781.1 PFAM: Cupin 4 family protein; KEGG: pol:Bpro_3175 cupin 4; cupin 4 family protein 1268439 4689773 Pnap_1191 Polaromonas naphthalenivorans CJ2 cupin 4 family protein YP_981427.1 1267198 D 365044 CDS YP_981428.1 121604099 4689453 1268486..1269001 1 NC_008781.1 KEGG: pol:Bpro_3174 hypothetical protein; hypothetical protein 1269001 4689453 Pnap_1192 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981428.1 1268486 D 365044 CDS YP_981429.1 121604100 4689761 1269216..1269485 1 NC_008781.1 KEGG: dar:Daro_0849 hypothetical protein; hypothetical protein 1269485 4689761 Pnap_1193 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981429.1 1269216 D 365044 CDS YP_981430.1 121604101 4689333 complement(1269563..1270336) 1 NC_008781.1 PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_3172 beta-lactamase-like; beta-lactamase domain-containing protein 1270336 4689333 Pnap_1194 Polaromonas naphthalenivorans CJ2 beta-lactamase domain-containing protein YP_981430.1 1269563 R 365044 CDS YP_981431.1 121604102 4689760 complement(1270377..1271537) 1 NC_008781.1 PFAM: NlpBDapX family lipoprotein; KEGG: pol:Bpro_3171 NlpBDapX lipoprotein; NlpB/DapX family lipoprotein 1271537 4689760 Pnap_1195 Polaromonas naphthalenivorans CJ2 NlpB/DapX family lipoprotein YP_981431.1 1270377 R 365044 CDS YP_981432.1 121604103 4689764 complement(1271554..1272519) 1 NC_008781.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1272519 4689764 Pnap_1196 Polaromonas naphthalenivorans CJ2 dihydrodipicolinate synthase YP_981432.1 1271554 R 365044 CDS YP_981433.1 121604104 4689768 complement(1272532..1273161) 1 NC_008781.1 KEGG: pol:Bpro_3169 methyltransferase type 11; type 11 methyltransferase 1273161 4689768 Pnap_1197 Polaromonas naphthalenivorans CJ2 type 11 methyltransferase YP_981433.1 1272532 R 365044 CDS YP_981434.1 121604105 4689880 complement(1273356..1274597) 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3167 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1274597 4689880 Pnap_1198 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_981434.1 1273356 R 365044 CDS YP_981435.1 121604106 4689927 1274752..1276731 1 NC_008781.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1276731 4689927 Pnap_1199 Polaromonas naphthalenivorans CJ2 DNA topoisomerase IV subunit B YP_981435.1 1274752 D 365044 CDS YP_981436.1 121604107 4689920 1276743..1277582 1 NC_008781.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_3164 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 1277582 4689920 Pnap_1200 Polaromonas naphthalenivorans CJ2 lytic transglycosylase catalytic subunit YP_981436.1 1276743 D 365044 CDS YP_981437.1 121604108 4689326 1277729..1280083 1 NC_008781.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1280083 4689326 Pnap_1201 Polaromonas naphthalenivorans CJ2 DNA topoisomerase IV subunit A YP_981437.1 1277729 D 365044 CDS YP_981438.1 121604109 4689323 complement(1280199..1282130) 1 NC_008781.1 KEGG: noc:Noc_1885 hypothetical protein; hypothetical protein 1282130 4689323 Pnap_1202 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981438.1 1280199 R 365044 CDS YP_981439.1 121604110 4688507 complement(1282137..1285076) 1 NC_008781.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; peptidase C14, caspase catalytic subunit p20; KEGG: noc:Noc_1884 peptidase C14, caspase catalytic subunit P20; peptidase C14, caspase catalytic subunit p20 1285076 4688507 Pnap_1203 Polaromonas naphthalenivorans CJ2 peptidase C14, caspase catalytic subunit p20 YP_981439.1 1282137 R 365044 CDS YP_981440.1 121604111 4689331 complement(1285359..1285829) 1 NC_008781.1 PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_3162 endoribonuclease L-PSP; endoribonuclease L-PSP 1285829 4689331 Pnap_1204 Polaromonas naphthalenivorans CJ2 endoribonuclease L-PSP YP_981440.1 1285359 R 365044 CDS YP_981441.1 121604112 4689312 1286099..1288636 1 NC_008781.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: pol:Bpro_3158 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-like competence protein ComEC/Rec2 1288636 4689312 Pnap_1205 Polaromonas naphthalenivorans CJ2 DNA internalization-like competence protein ComEC/Rec2 YP_981441.1 1286099 D 365044 CDS YP_981442.1 121604113 4689063 1288689..1290245 1 NC_008781.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pol:Bpro_3157 protein of unknown function DUF404; hypothetical protein 1290245 4689063 Pnap_1206 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981442.1 1288689 D 365044 CDS YP_981443.1 121604114 4689320 1290248..1291210 1 NC_008781.1 PFAM: protein of unknown function DUF403; KEGG: pol:Bpro_3156 protein of unknown function DUF403; hypothetical protein 1291210 4689320 Pnap_1207 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981443.1 1290248 D 365044 CDS YP_981444.1 121604115 4689325 1291248..1292066 1 NC_008781.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pol:Bpro_3155 transglutaminase-like; transglutaminase domain-containing protein 1292066 4689325 Pnap_1208 Polaromonas naphthalenivorans CJ2 transglutaminase domain-containing protein YP_981444.1 1291248 D 365044 CDS YP_981445.1 121604116 4689319 complement(1292126..1293928) 1 NC_008781.1 PFAM: Alkaline phosphatase; KEGG: hch:HCH_01191 phosphodiesterase/alkaline phosphatase D; alkaline phosphatase 1293928 4689319 Pnap_1209 Polaromonas naphthalenivorans CJ2 alkaline phosphatase YP_981445.1 1292126 R 365044 CDS YP_981446.1 121604117 4689313 complement(1294036..1295022) 1 NC_008781.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbr:BB0460 zinc-binding dehydrogenase; alcohol dehydrogenase 1295022 4689313 Pnap_1210 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_981446.1 1294036 R 365044 CDS YP_981447.1 121604118 4689318 1295249..1301224 1 NC_008781.1 KEGG: tdn:Tmden_0240 conserved hypothetical protein, putative DNA helicase; putative DNA helicase 1301224 4689318 Pnap_1211 Polaromonas naphthalenivorans CJ2 putative DNA helicase YP_981447.1 1295249 D 365044 CDS YP_981448.1 121604119 4689314 1301419..1301724 1 NC_008781.1 TIGRFAM: prevent-host-death family protein; KEGG: rfr:Rfer_0623 prevent-host-death protein; prevent-host-death family protein 1301724 4689314 Pnap_1212 Polaromonas naphthalenivorans CJ2 prevent-host-death family protein YP_981448.1 1301419 D 365044 CDS YP_981449.1 121604120 4689322 1301721..1302152 1 NC_008781.1 PFAM: PilT protein domain protein; KEGG: rpd:RPD_1602 PilT protein-like; PilT domain-containing protein 1302152 4689322 Pnap_1213 Polaromonas naphthalenivorans CJ2 PilT domain-containing protein YP_981449.1 1301721 D 365044 CDS YP_981450.1 121604121 4689324 1302329..1303804 1 NC_008781.1 PFAM: KWG Leptospira repeat protein; KEGG: ana:all4040 unknown protein; hypothetical protein 1303804 4689324 Pnap_1214 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981450.1 1302329 D 365044 CDS YP_981451.1 121604122 4688983 complement(1303784..1304485) 1 NC_008781.1 KEGG: hch:HCH_04341 hypothetical protein; hypothetical protein 1304485 4688983 Pnap_1215 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981451.1 1303784 R 365044 CDS YP_981452.1 121604123 4688965 complement(1304545..1305636) 1 NC_008781.1 TIGRFAM: lytic murein transglycosylase B; KEGG: pol:Bpro_3149 lytic murein transglycosylase B; lytic murein transglycosylase B 1305636 4688965 Pnap_1216 Polaromonas naphthalenivorans CJ2 lytic murein transglycosylase B YP_981452.1 1304545 R 365044 CDS YP_981453.1 121604124 4688880 complement(1305669..1307738) 1 NC_008781.1 PFAM: transglutaminase domain protein; KEGG: pol:Bpro_3148 transglutaminase-like; transglutaminase domain-containing protein 1307738 4688880 Pnap_1217 Polaromonas naphthalenivorans CJ2 transglutaminase domain-containing protein YP_981453.1 1305669 R 365044 CDS YP_981454.1 121604125 4689002 complement(1307732..1308799) 1 NC_008781.1 PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3147 protein of unknown function DUF58; hypothetical protein 1308799 4689002 Pnap_1218 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981454.1 1307732 R 365044 CDS YP_981455.1 121604126 4688410 complement(1308780..1309712) 1 NC_008781.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_3146 ATPase associated with various cellular activities, AAA_3; ATPase 1309712 4688410 Pnap_1219 Polaromonas naphthalenivorans CJ2 ATPase YP_981455.1 1308780 R 365044 CDS YP_981456.1 121604127 4688363 1309742..1310695 1 NC_008781.1 PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3145 histone deacetylase superfamily; histone deacetylase superfamily protein 1310695 4688363 Pnap_1220 Polaromonas naphthalenivorans CJ2 histone deacetylase superfamily protein YP_981456.1 1309742 D 365044 CDS YP_981457.1 121604128 4688804 1310706..1311527 1 NC_008781.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A0993 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 1311527 4688804 Pnap_1221 Polaromonas naphthalenivorans CJ2 enoyl-CoA hydratase/isomerase YP_981457.1 1310706 D 365044 CDS YP_981458.1 121604129 4689020 1311524..1312879 1 NC_008781.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_3144 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1312879 4689020 Pnap_1222 Polaromonas naphthalenivorans CJ2 mechanosensitive ion channel protein MscS YP_981458.1 1311524 D 365044 CDS YP_981459.1 121604130 4689016 1313073..1313822 1 NC_008781.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: pol:Bpro_3143 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 1313822 4689016 Pnap_1223 Polaromonas naphthalenivorans CJ2 electron transfer flavoprotein subunit beta YP_981459.1 1313073 D 365044 CDS YP_981460.1 121604131 4688251 1313853..1314785 1 NC_008781.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: pol:Bpro_3142 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1314785 4688251 Pnap_1224 Polaromonas naphthalenivorans CJ2 electron transfer flavoprotein subunit alpha YP_981460.1 1313853 D 365044 CDS YP_981461.1 121604132 4688701 1314881..1316671 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1316671 4688701 Pnap_1225 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_981461.1 1314881 D 365044 CDS YP_981462.1 121604133 4688697 1316769..1317725 1 NC_008781.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: pol:Bpro_3140 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 1317725 4688697 Pnap_1226 Polaromonas naphthalenivorans CJ2 2-nitropropane dioxygenase YP_981462.1 1316769 D 365044 CDS YP_981463.1 121604134 4689101 1317952..1318644 1 NC_008781.1 KEGG: rfr:Rfer_3472 hypothetical protein; hypothetical protein 1318644 4689101 Pnap_1227 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981463.1 1317952 D 365044 CDS YP_981464.1 121604135 4688702 complement(1318679..1320388) 1 NC_008781.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pol:Bpro_3130 sulfatase; sulfatase 1320388 4688702 Pnap_1228 Polaromonas naphthalenivorans CJ2 sulfatase YP_981464.1 1318679 R 365044 CDS YP_981465.1 121604136 4688699 complement(1320425..1321285) 1 NC_008781.1 PFAM: putative esterase; KEGG: rfr:Rfer_0122 carboxylesterase; carboxylesterase 1321285 4688699 Pnap_1229 Polaromonas naphthalenivorans CJ2 carboxylesterase YP_981465.1 1320425 R 365044 CDS YP_981466.1 121604137 4688703 complement(1321348..1322454) 1 NC_008781.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_3129 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 1322454 4688703 Pnap_1230 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_981466.1 1321348 R 365044 CDS YP_981467.1 121604138 4688700 complement(1322569..1322985) 1 NC_008781.1 PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_2006 RNA-binding S4; RNA-binding S4 domain-containing protein 1322985 4688700 Pnap_1231 Polaromonas naphthalenivorans CJ2 RNA-binding S4 domain-containing protein YP_981467.1 1322569 R 365044 CDS YP_981468.1 121604139 4688501 complement(1322986..1324425) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: pol:Bpro_2007 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1324425 4688501 Pnap_1232 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_981468.1 1322986 R 365044 CDS YP_981469.1 121604140 4689137 complement(1324422..1325114) 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2008 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1325114 4689137 Pnap_1233 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_981469.1 1324422 R 365044 CDS YP_981470.1 121604141 4688448 1325213..1326172 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2009 uncharacterized protein UPF0065; hypothetical protein 1326172 4688448 Pnap_1234 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981470.1 1325213 D 365044 CDS YP_981471.1 121604142 4688306 1326378..1326890 1 NC_008781.1 KEGG: pol:Bpro_2010 hypothetical protein; hypothetical protein 1326890 4688306 Pnap_1235 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981471.1 1326378 D 365044 CDS YP_981472.1 121604143 4688310 1326881..1328404 1 NC_008781.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane; hypothetical protein 1328404 4688310 Pnap_1236 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981472.1 1326881 D 365044 CDS YP_981473.1 121604144 4688274 1328445..1329458 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2012 twin-arginine translocation pathway signal; hypothetical protein 1329458 4688274 Pnap_1237 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981473.1 1328445 D 365044 CDS YP_981474.1 121604145 4688290 1329584..1331041 1 NC_008781.1 PFAM: Fibronectin, type III domain protein; KEGG: cvi:CV0172 poly (3-hydroxybutyrate) depolymerase; fibronectin I domain-containing protein 1331041 4688290 Pnap_1238 Polaromonas naphthalenivorans CJ2 fibronectin I domain-containing protein YP_981474.1 1329584 D 365044 CDS YP_981475.1 121604146 4688279 1331208..1331666 1 NC_008781.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein 1331666 4688279 Pnap_1239 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981475.1 1331208 D 365044 CDS YP_981476.1 121604147 4687836 1331686..1332162 1 NC_008781.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 1332162 4687836 Pnap_1240 Polaromonas naphthalenivorans CJ2 putative transposase of insertion sequence ISRm10-1 YP_981476.1 1331686 D 365044 CDS YP_981477.1 121604148 4688255 complement(1332170..1332952) 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR; KEGG: pol:Bpro_3536 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1332952 4688255 Pnap_1241 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_981477.1 1332170 R 365044 CDS YP_981478.1 121604149 4687883 1333169..1334113 1 NC_008781.1 PFAM: UbiA prenyltransferase; KEGG: eba:ebA3963 predicted 1,4-dihydroxy-2-naphthoate octaprenyltransferase; UbiA prenyltransferase 1334113 4687883 Pnap_1242 Polaromonas naphthalenivorans CJ2 UbiA prenyltransferase YP_981478.1 1333169 D 365044 CDS YP_981479.1 121604150 4688237 complement(1334134..1334640) 1 NC_008781.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bxe:Bxe_C0962 hypothetical protein; hemerythrin-like metal-binding protein 1334640 4688237 Pnap_1243 Polaromonas naphthalenivorans CJ2 hemerythrin-like metal-binding protein YP_981479.1 1334134 R 365044 CDS YP_981480.1 121604151 4687598 complement(1334837..1336552) 1 NC_008781.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_3520 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 1336552 4687598 Pnap_1244 Polaromonas naphthalenivorans CJ2 DEAD/DEAH box helicase YP_981480.1 1334837 R 365044 CDS YP_981481.1 121604152 4687674 1336892..1338553 1 NC_008781.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1338553 4687674 Pnap_1245 Polaromonas naphthalenivorans CJ2 putative ABC transporter ATP-binding protein YP_981481.1 1336892 D 365044 CDS YP_981482.1 121604153 4688332 1338561..1339109 1 NC_008781.1 PFAM: protein of unknown function DUF1415; KEGG: pol:Bpro_3518 protein of unknown function DUF1415; hypothetical protein 1339109 4688332 Pnap_1246 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981482.1 1338561 D 365044 CDS YP_981483.1 121604154 4688322 1339204..1341552 1 NC_008781.1 KEGG: rfr:Rfer_2170 hypothetical protein; hypothetical protein 1341552 4688322 Pnap_1247 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981483.1 1339204 D 365044 CDS YP_981484.1 121604155 4687975 complement(1341556..1342833) 1 NC_008781.1 KEGG: pol:Bpro_2111 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1342833 4687975 Pnap_1248 Polaromonas naphthalenivorans CJ2 amidohydrolase YP_981484.1 1341556 R 365044 CDS YP_981485.1 121604156 4688338 complement(1342830..1345526) 1 NC_008781.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_4157 ATPase, E1-E2 type; HAD superfamily P-type ATPase 1345526 4688338 Pnap_1249 Polaromonas naphthalenivorans CJ2 HAD superfamily P-type ATPase YP_981485.1 1342830 R 365044 CDS YP_981486.1 121604157 4688334 complement(1345602..1346939) 1 NC_008781.1 KEGG: pol:Bpro_3507 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 1346939 4688334 Pnap_1250 Polaromonas naphthalenivorans CJ2 TRAP transporter solute receptor TAXI family protein YP_981486.1 1345602 R 365044 CDS YP_981487.1 121604158 4688330 1347175..1347636 1 NC_008781.1 hypothetical protein 1347636 4688330 Pnap_1251 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981487.1 1347175 D 365044 CDS YP_981488.1 121604159 4688326 1347800..1348213 1 NC_008781.1 KEGG: rfr:Rfer_0421 hypothetical protein; hypothetical protein 1348213 4688326 Pnap_1252 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981488.1 1347800 D 365044 CDS YP_981489.1 121604160 4688331 1348227..1348487 1 NC_008781.1 KEGG: pol:Bpro_1174 hypothetical protein; hypothetical protein 1348487 4688331 Pnap_1253 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981489.1 1348227 D 365044 CDS YP_981490.1 121604161 4687696 1348593..1348883 1 NC_008781.1 KEGG: pol:Bpro_1175 hypothetical protein; hypothetical protein 1348883 4687696 Pnap_1254 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981490.1 1348593 D 365044 CDS YP_981491.1 121604162 4688327 1348880..1349530 1 NC_008781.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pol:Bpro_1176 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 1349530 4688327 Pnap_1255 Polaromonas naphthalenivorans CJ2 isoprenylcysteine carboxyl methyltransferase YP_981491.1 1348880 D 365044 CDS YP_981492.1 121604163 4688323 1349714..1350340 1 NC_008781.1 hypothetical protein 1350340 4688323 Pnap_1256 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981492.1 1349714 D 365044 CDS YP_981493.1 121604164 4688467 1350388..1350813 1 NC_008781.1 KEGG: pol:Bpro_1181 hypothetical protein; hypothetical protein 1350813 4688467 Pnap_1257 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981493.1 1350388 D 365044 CDS YP_981494.1 121604165 4687593 1350838..1353174 1 NC_008781.1 KEGG: rfr:Rfer_0418 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 1353174 4687593 Pnap_1258 Polaromonas naphthalenivorans CJ2 heavy metal translocating P-type ATPase YP_981494.1 1350838 D 365044 CDS YP_981495.1 121604166 4688375 complement(1353205..1353672) 1 NC_008781.1 PFAM: protein of unknown function DUF411; KEGG: pol:Bpro_3488 protein of unknown function DUF411; hypothetical protein 1353672 4688375 Pnap_1259 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981495.1 1353205 R 365044 CDS YP_981496.1 121604167 4689711 complement(1353695..1354513) 1 NC_008781.1 PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain; blue (type1) copper domain-containing protein 1354513 4689711 Pnap_1260 Polaromonas naphthalenivorans CJ2 blue (type1) copper domain-containing protein YP_981496.1 1353695 R 365044 CDS YP_981497.1 121604168 4688418 complement(1354551..1355942) 1 NC_008781.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase, type 3 1355942 4688418 Pnap_1261 Polaromonas naphthalenivorans CJ2 multicopper oxidase, type 3 YP_981497.1 1354551 R 365044 CDS YP_981498.1 121604169 4687932 complement(1355984..1357183) 1 NC_008781.1 KEGG: bxe:Bxe_B2295 putative outer membrane efflux protein involved in copper resistance; putative outer membrane efflux protein involved in copper resistance 1357183 4687932 Pnap_1262 Polaromonas naphthalenivorans CJ2 putative outer membrane efflux protein involved in copper resistance YP_981498.1 1355984 R 365044 CDS YP_981499.1 121604170 4687938 complement(1357192..1357521) 1 NC_008781.1 hypothetical protein 1357521 4687938 Pnap_1263 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981499.1 1357192 R 365044 CDS YP_981500.1 121604171 4687936 1357581..1358105 1 NC_008781.1 hypothetical protein 1358105 4687936 Pnap_1264 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981500.1 1357581 D 365044 CDS YP_981501.1 121604172 4687931 1358230..1358766 1 NC_008781.1 KEGG: pol:Bpro_0179 hypothetical protein; hypothetical protein 1358766 4687931 Pnap_1265 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981501.1 1358230 D 365044 CDS YP_981502.1 121604173 4687930 1358805..1359422 1 NC_008781.1 hypothetical protein 1359422 4687930 Pnap_1266 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981502.1 1358805 D 365044 CDS YP_981503.1 121604174 4687929 1359554..1360471 1 NC_008781.1 PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: reu:Reut_A2791 ion transport protein; Ion transport protein 1360471 4687929 Pnap_1267 Polaromonas naphthalenivorans CJ2 Ion transport protein YP_981503.1 1359554 D 365044 CDS YP_981504.1 121604175 4690082 complement(1360492..1361049) 1 NC_008781.1 PFAM: YaeQ family protein; KEGG: pol:Bpro_3468 YaeQ; YaeQ family protein 1361049 4690082 Pnap_1268 Polaromonas naphthalenivorans CJ2 YaeQ family protein YP_981504.1 1360492 R 365044 CDS YP_981505.1 121604176 4687569 complement(1361153..1362544) 1 NC_008781.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1362544 4687569 Pnap_1269 Polaromonas naphthalenivorans CJ2 coproporphyrinogen III oxidase YP_981505.1 1361153 R 365044 CDS YP_981506.1 121604177 4687517 1362949..1363338 1 NC_008781.1 KEGG: pol:Bpro_3461 hypothetical protein; hypothetical protein 1363338 4687517 Pnap_1270 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981506.1 1362949 D 365044 CDS YP_981507.1 121604178 4687520 1363401..1363682 1 NC_008781.1 PFAM: protein of unknown function DUF427; KEGG: pol:Bpro_3460 protein of unknown function DUF427; hypothetical protein 1363682 4687520 Pnap_1271 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981507.1 1363401 D 365044 CDS YP_981508.1 121604179 4687512 1363756..1364193 1 NC_008781.1 PFAM: UspA domain protein; KEGG: pol:Bpro_3459 UspA; UspA domain-containing protein 1364193 4687512 Pnap_1272 Polaromonas naphthalenivorans CJ2 UspA domain-containing protein YP_981508.1 1363756 D 365044 CDS YP_981509.1 121604180 4687516 1364229..1364468 1 NC_008781.1 PFAM: protein of unknown function DUF465; KEGG: cps:CPS_0008 hypothetical protein; hypothetical protein 1364468 4687516 Pnap_1273 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981509.1 1364229 D 365044 CDS YP_981510.1 121604181 4687269 1364672..1365589 1 NC_008781.1 PFAM: protein of unknown function DUF344; KEGG: rme:Rmet_0550 protein of unknown function DUF344; hypothetical protein 1365589 4687269 Pnap_1274 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981510.1 1364672 D 365044 CDS YP_981511.1 121604182 4686885 complement(1365597..1366352) 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rso:RSc1029 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1366352 4686885 Pnap_1275 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_981511.1 1365597 R 365044 CDS YP_981512.1 121604183 4686828 complement(1366393..1367094) 1 NC_008781.1 PFAM: pseudouridine synthase; KEGG: pol:Bpro_3457 pseudouridine synthase; pseudouridine synthase 1367094 4686828 Pnap_1276 Polaromonas naphthalenivorans CJ2 pseudouridine synthase YP_981512.1 1366393 R 365044 CDS YP_981513.1 121604184 4687577 complement(1367091..1367408) 1 NC_008781.1 KEGG: pol:Bpro_3456 hypothetical protein; hypothetical protein 1367408 4687577 Pnap_1277 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981513.1 1367091 R 365044 CDS YP_981514.1 121604185 4687179 complement(1367641..1368882) 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB 1368882 4687179 Pnap_1278 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_981514.1 1367641 R 365044 CDS YP_981515.1 121604186 4687587 1368905..1369321 1 NC_008781.1 PFAM: transposase IS200-family protein; KEGG: hpy:HP1008 IS200 insertion sequence from SARA17; transposase IS200-family protein 1369321 4687587 Pnap_1279 Polaromonas naphthalenivorans CJ2 transposase IS200-family protein YP_981515.1 1368905 D 365044 CDS YP_981516.1 121604187 4687588 complement(1369397..1370695) 1 NC_008781.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_3455 NADH dehydrogenase; NADH dehydrogenase 1370695 4687588 Pnap_1280 Polaromonas naphthalenivorans CJ2 NADH dehydrogenase YP_981516.1 1369397 R 365044 CDS YP_981517.1 121604188 4687583 1370899..1372146 1 NC_008781.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_3450 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1372146 4687583 Pnap_1281 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_981517.1 1370899 D 365044 CDS YP_981518.1 121604189 4687586 complement(1372172..1373455) 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I; class I cytochrome c 1373455 4687586 Pnap_1282 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_981518.1 1372172 R 365044 CDS YP_981519.1 121604190 4687581 complement(1373452..1374237) 1 NC_008781.1 KEGG: pol:Bpro_3448 putative cytochrome c; putative cytochrome c 1374237 4687581 Pnap_1283 Polaromonas naphthalenivorans CJ2 putative cytochrome c YP_981519.1 1373452 R 365044 CDS YP_981520.1 121604191 4687689 complement(1374302..1375120) 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3438 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1375120 4687689 Pnap_1284 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold protein YP_981520.1 1374302 R 365044 CDS YP_981521.1 121604192 4687580 complement(1375117..1376187) 1 NC_008781.1 KEGG: pol:Bpro_3437 hypothetical protein; hypothetical protein 1376187 4687580 Pnap_1285 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981521.1 1375117 R 365044 CDS YP_981522.1 121604193 4687691 complement(1376267..1376578) 1 NC_008781.1 PFAM: ferredoxin; KEGG: pol:Bpro_3434 ferredoxin; ferredoxin 1376578 4687691 Pnap_1286 Polaromonas naphthalenivorans CJ2 ferredoxin YP_981522.1 1376267 R 365044 CDS YP_981523.1 121604194 4687709 1376709..1377236 1 NC_008781.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_3433 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1377236 4687709 Pnap_1287 Polaromonas naphthalenivorans CJ2 N-acetyltransferase GCN5 YP_981523.1 1376709 D 365044 CDS YP_981524.1 121604195 4687253 1377744..1378112 1 NC_008781.1 KEGG: pol:Bpro_3432 hypothetical protein; hypothetical protein 1378112 4687253 Pnap_1288 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981524.1 1377744 D 365044 CDS YP_981525.1 121604196 4687254 1378230..1379165 1 NC_008781.1 PFAM: protein of unknown function DUF808; KEGG: tbd:Tbd_0220 hypothetical protein; hypothetical protein 1379165 4687254 Pnap_1289 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981525.1 1378230 D 365044 CDS YP_981526.1 121604197 4687251 complement(1379656..1380360) 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR; KEGG: pol:Bpro_0101 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 1380360 4687251 Pnap_1290 Polaromonas naphthalenivorans CJ2 short chain dehydrogenase YP_981526.1 1379656 R 365044 CDS YP_981527.1 121604198 4687256 complement(1380439..1381440) 1 NC_008781.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_0102 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 1381440 4687256 Pnap_1291 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_981527.1 1380439 R 365044 CDS YP_981528.1 121604199 4686803 complement(1381539..1381829) 1 NC_008781.1 KEGG: pol:Bpro_0106 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1381829 4686803 Pnap_1292 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_981528.1 1381539 R 365044 CDS YP_981529.1 121604200 4686742 complement(1381982..1382581) 1 NC_008781.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_0107 transcriptional regulator, TetR family; TetR family transcriptional regulator 1382581 4686742 Pnap_1293 Polaromonas naphthalenivorans CJ2 TetR family transcriptional regulator YP_981529.1 1381982 R 365044 CDS YP_981530.1 121604201 4686881 1382867..1384102 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB 1384102 4686881 Pnap_1294 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_981530.1 1382867 D 365044 CDS YP_981531.1 121604202 4686718 complement(1384141..1385163) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3431 transcriptional regulator, LysR family; LysR family transcriptional regulator 1385163 4686718 Pnap_1295 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981531.1 1384141 R 365044 CDS YP_981532.1 121604203 4686740 1385343..1386254 1 NC_008781.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pol:Bpro_3430 alpha/beta hydrolase fold-3; alpha/beta hydrolase domain-containing protein 1386254 4686740 Pnap_1296 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase domain-containing protein YP_981532.1 1385343 D 365044 CDS YP_981533.1 121604204 4686699 1386306..1386755 1 NC_008781.1 KEGG: pol:Bpro_3429 secretion protein HlyD; secretion protein HlyD 1386755 4686699 Pnap_1297 Polaromonas naphthalenivorans CJ2 secretion protein HlyD YP_981533.1 1386306 D 365044 CDS YP_981534.1 121604205 4686637 1386789..1387550 1 NC_008781.1 KEGG: pol:Bpro_3429 secretion protein HlyD; secretion protein HlyD 1387550 4686637 Pnap_1298 Polaromonas naphthalenivorans CJ2 secretion protein HlyD YP_981534.1 1386789 D 365044 CDS YP_981535.1 121604206 4686477 1387583..1390828 1 NC_008781.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_3428 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1390828 4686477 Pnap_1299 Polaromonas naphthalenivorans CJ2 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_981535.1 1387583 D 365044 CDS YP_981536.1 121604207 4686562 1390870..1392276 1 NC_008781.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3427 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 1392276 4686562 Pnap_1300 Polaromonas naphthalenivorans CJ2 RND efflux system outer membrane lipoprotein YP_981536.1 1390870 D 365044 CDS YP_981537.1 121604208 4686326 1392448..1393701 1 NC_008781.1 PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: pol:Bpro_3426 methyltransferase small; methyltransferase small 1393701 4686326 Pnap_1301 Polaromonas naphthalenivorans CJ2 methyltransferase small YP_981537.1 1392448 D 365044 CDS YP_981538.1 121604209 4686417 1393739..1394695 1 NC_008781.1 PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_3425 dihydrouridine synthase, DuS; dihydrouridine synthase 1394695 4686417 Pnap_1302 Polaromonas naphthalenivorans CJ2 dihydrouridine synthase YP_981538.1 1393739 D 365044 CDS YP_981539.1 121604210 4686830 1394839..1395348 1 NC_008781.1 KEGG: pol:Bpro_3410 hypothetical protein; hypothetical protein 1395348 4686830 Pnap_1303 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981539.1 1394839 D 365044 CDS YP_981540.1 121604211 4686825 complement(1395460..1396641) 1 NC_008781.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 1396641 4686825 Pnap_1304 Polaromonas naphthalenivorans CJ2 nitric oxide dioxygenase YP_981540.1 1395460 R 365044 CDS YP_981541.1 121604212 4686819 1396832..1398421 1 NC_008781.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 1398421 4686819 Pnap_1305 Polaromonas naphthalenivorans CJ2 anaerobic nitric oxide reductase transcriptional regulator YP_981541.1 1396832 D 365044 CDS YP_981542.1 121604213 4686951 complement(1398526..1398990) 1 NC_008781.1 KEGG: mlo:mlr0720 hypothetical protein; hypothetical protein 1398990 4686951 Pnap_1306 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981542.1 1398526 R 365044 CDS YP_981543.1 121604214 4686818 1399239..1399901 1 NC_008781.1 PFAM: phospholipase/Carboxylesterase; KEGG: pol:Bpro_3402 carboxylesterase; phospholipase/carboxylesterase 1399901 4686818 Pnap_1307 Polaromonas naphthalenivorans CJ2 phospholipase/carboxylesterase YP_981543.1 1399239 D 365044 CDS YP_981544.1 121604215 4686822 1400006..1401589 1 NC_008781.1 TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_3399 glutamate--cysteine ligase, monofunctional; glutamate--cysteine ligase 1401589 4686822 Pnap_1308 Polaromonas naphthalenivorans CJ2 glutamate--cysteine ligase YP_981544.1 1400006 D 365044 CDS YP_981545.1 121604216 4686829 complement(1401766..1402374) 1 NC_008781.1 KEGG: rme:Rmet_5275 intradiol ring-cleavage dioxygenase; hypothetical protein 1402374 4686829 Pnap_1309 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981545.1 1401766 R 365044 CDS YP_981546.1 121604217 4686823 complement(1402652..1403143) 1 NC_008781.1 KEGG: hypothetical protein; hypothetical protein 1403143 4686823 Pnap_1310 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981546.1 1402652 R 365044 CDS YP_981547.1 121604218 4686827 complement(1403585..1403986) 1 NC_008781.1 KEGG: pol:Bpro_3397 hypothetical protein; hypothetical protein 1403986 4686827 Pnap_1311 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981547.1 1403585 R 365044 CDS YP_981548.1 121604219 4687933 1404031..1404990 1 NC_008781.1 PFAM: GTP-binding protein, HSR1-related; KEGG: pol:Bpro_3396 GTP-binding; HSR1-like GTP-binding protein 1404990 4687933 Pnap_1312 Polaromonas naphthalenivorans CJ2 HSR1-like GTP-binding protein YP_981548.1 1404031 D 365044 CDS YP_981549.1 121604220 4686821 1405129..1405497 1 NC_008781.1 KEGG: bcn:Bcen_5665 hypothetical protein; hypothetical protein 1405497 4686821 Pnap_1313 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981549.1 1405129 D 365044 CDS YP_981550.1 121604221 4687035 1405557..1406129 1 NC_008781.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: eba:ebA1694 hypothetical protein; hemerythrin HHE cation-binding domain-containing protein 1406129 4687035 Pnap_1314 Polaromonas naphthalenivorans CJ2 hemerythrin HHE cation-binding domain-containing protein YP_981550.1 1405557 D 365044 CDS YP_981551.1 121604222 4686308 1406308..1407024 1 NC_008781.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_0177 cyclic nucleotide-binding domain (cNMP-BD) protein; CRP/FNR family transcriptional regulator 1407024 4686308 Pnap_1315 Polaromonas naphthalenivorans CJ2 CRP/FNR family transcriptional regulator YP_981551.1 1406308 D 365044 CDS YP_981552.1 121604223 4686891 1407200..1407943 1 NC_008781.1 KEGG: pol:Bpro_0178 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding domain-containing protein 1407943 4686891 Pnap_1316 Polaromonas naphthalenivorans CJ2 cyclic nucleotide-binding domain-containing protein YP_981552.1 1407200 D 365044 CDS YP_981553.1 121604224 4686287 1408046..1408327 1 NC_008781.1 KEGG: pol:Bpro_0179 hypothetical protein; hypothetical protein 1408327 4686287 Pnap_1317 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981553.1 1408046 D 365044 CDS YP_981554.1 121604225 4686312 1408548..1410494 1 NC_008781.1 KEGG: bxe:Bxe_C1298 hypothetical protein; hypothetical protein 1410494 4686312 Pnap_1318 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981554.1 1408548 D 365044 CDS YP_981555.1 121604226 4686997 1410542..1411672 1 NC_008781.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: rfr:Rfer_1882 OmpA/MotB; OmpA/MotB domain-containing protein 1411672 4686997 Pnap_1319 Polaromonas naphthalenivorans CJ2 OmpA/MotB domain-containing protein YP_981555.1 1410542 D 365044 CDS YP_981556.1 121604227 4686313 1412240..1412509 1 NC_008781.1 hypothetical protein 1412509 4686313 Pnap_1320 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981556.1 1412240 D 365044 CDS YP_981557.1 121604228 4686311 1412506..1414134 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: tte:TTE0684 hypothetical protein; IS605 family transposase OrfB 1414134 4686311 Pnap_1321 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_981557.1 1412506 D 365044 CDS YP_981558.1 121604229 4686301 1414184..1414579 1 NC_008781.1 KEGG: rfr:Rfer_2015 hypothetical protein; hypothetical protein 1414579 4686301 Pnap_1322 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981558.1 1414184 D 365044 CDS YP_981559.1 121604230 4686302 1414774..1415220 1 NC_008781.1 PFAM: heat shock protein Hsp20; KEGG: eba:ebA2730 heat shock protein, HSP20 family; heat shock protein Hsp20 1415220 4686302 Pnap_1323 Polaromonas naphthalenivorans CJ2 heat shock protein Hsp20 YP_981559.1 1414774 D 365044 CDS YP_981560.1 121604231 4686304 1415256..1415843 1 NC_008781.1 PFAM: heat shock protein Hsp20; KEGG: mca:MCA1731 heat shock protein, HSP20 family; heat shock protein Hsp20 1415843 4686304 Pnap_1324 Polaromonas naphthalenivorans CJ2 heat shock protein Hsp20 YP_981560.1 1415256 D 365044 CDS YP_981561.1 121604232 4686260 1415957..1416892 1 NC_008781.1 KEGG: rfr:Rfer_1390 phosphoesterase, DHHA1; phosphoesterase, DHHA1 1416892 4686260 Pnap_1325 Polaromonas naphthalenivorans CJ2 phosphoesterase, DHHA1 YP_981561.1 1415957 D 365044 CDS YP_981562.1 121604233 4686258 complement(1417235..1418635) 1 NC_008781.1 KEGG: nmu:Nmul_A1998 nitrite reductase (NO-forming); TIGRFAM: nitrite reductase, copper-containing; PFAM: blue (type 1) copper domain protein; multicopper oxidase, type 2; multicopper oxidase, type 3; nitrite reductase 1418635 4686258 Pnap_1326 Polaromonas naphthalenivorans CJ2 nitrite reductase YP_981562.1 1417235 R 365044 CDS YP_981563.1 121604234 4686300 complement(1418866..1419372) 1 NC_008781.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tbd:Tbd_2014 hypothetical protein; BadM/Rrf2 family transcriptional regulator 1419372 4686300 Pnap_1327 Polaromonas naphthalenivorans CJ2 BadM/Rrf2 family transcriptional regulator YP_981563.1 1418866 R 365044 CDS YP_981564.1 121604235 4686259 1419586..1421862 1 NC_008781.1 KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein 1421862 4686259 Pnap_1328 Polaromonas naphthalenivorans CJ2 putative nitric oxide reductase (subunit B) transmembrane protein YP_981564.1 1419586 D 365044 CDS YP_981565.1 121604236 4686307 1421959..1422222 1 NC_008781.1 KEGG: dar:Daro_2384 hypothetical protein; hypothetical protein 1422222 4686307 Pnap_1329 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981565.1 1421959 D 365044 CDS YP_981566.1 121604237 4686255 1422288..1422755 1 NC_008781.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: eba:ebB180 predicted invasion gene expression up-regulator, SirB; invasion gene expression up-regulator, SirB 1422755 4686255 Pnap_1330 Polaromonas naphthalenivorans CJ2 invasion gene expression up-regulator, SirB YP_981566.1 1422288 D 365044 CDS YP_981567.1 121604238 4686309 1423058..1423684 1 NC_008781.1 KEGG: pol:Bpro_3378 hypothetical protein; hypothetical protein 1423684 4686309 Pnap_1331 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981567.1 1423058 D 365044 CDS YP_981568.1 121604239 4686292 complement(1423788..1424267) 1 NC_008781.1 TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain; KEGG: pol:Bpro_3369 thioredoxin; thioredoxin 1424267 4686292 Pnap_1332 Polaromonas naphthalenivorans CJ2 thioredoxin YP_981568.1 1423788 R 365044 CDS YP_981569.1 121604240 4686293 complement(1424291..1424842) 1 NC_008781.1 PFAM: cytochrome B561; KEGG: rfr:Rfer_2023 cytochrome b561; cytochrome B561 1424842 4686293 Pnap_1333 Polaromonas naphthalenivorans CJ2 cytochrome B561 YP_981569.1 1424291 R 365044 CDS YP_981570.1 121604241 4686826 1425059..1425616 1 NC_008781.1 KEGG: pol:Bpro_3373 putative lipoprotein; putative lipoprotein 1425616 4686826 Pnap_1334 Polaromonas naphthalenivorans CJ2 putative lipoprotein YP_981570.1 1425059 D 365044 CDS YP_981571.1 121604242 4687502 complement(1425586..1426251) 1 NC_008781.1 PFAM: pseudouridine synthase; KEGG: tbd:Tbd_0853 pseudouridine synthase, Rsu; pseudouridine synthase 1426251 4687502 Pnap_1335 Polaromonas naphthalenivorans CJ2 pseudouridine synthase YP_981571.1 1425586 R 365044 CDS YP_981572.1 121604243 4687186 complement(1426285..1428165) 1 NC_008781.1 PFAM: Amidohydrolase 3; KEGG: pol:Bpro_4811 amidohydrolase 3; amidohydrolase 3 1428165 4687186 Pnap_1336 Polaromonas naphthalenivorans CJ2 amidohydrolase 3 YP_981572.1 1426285 R 365044 CDS YP_981573.1 121604244 4687333 complement(1428233..1428850) 1 NC_008781.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pol:Bpro_4812 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1428850 4687333 Pnap_1337 Polaromonas naphthalenivorans CJ2 antibiotic biosynthesis monooxygenase YP_981573.1 1428233 R 365044 CDS YP_981574.1 121604245 4687292 complement(1428860..1429510) 1 NC_008781.1 PFAM: isochorismatase hydrolase; KEGG: pol:Bpro_4813 isochorismatase hydrolase; isochorismatase hydrolase 1429510 4687292 Pnap_1338 Polaromonas naphthalenivorans CJ2 isochorismatase hydrolase YP_981574.1 1428860 R 365044 CDS YP_981575.1 121604246 4686120 1429632..1430534 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4814 transcriptional regulator, LysR family; LysR family transcriptional regulator 1430534 4686120 Pnap_1339 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981575.1 1429632 D 365044 CDS YP_981576.1 121604247 4690223 complement(1430550..1431125) 1 NC_008781.1 PFAM: protein of unknown function DUF1211; KEGG: cvi:CV0104 hypothetical protein; hypothetical protein 1431125 4690223 Pnap_1340 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981576.1 1430550 R 365044 CDS YP_981577.1 121604248 4686066 complement(1431235..1431693) 1 NC_008781.1 hypothetical protein 1431693 4686066 Pnap_1341 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981577.1 1431235 R 365044 CDS YP_981578.1 121604249 4686076 complement(1431777..1432667) 1 NC_008781.1 PFAM: peptidase M23B; KEGG: bbr:BB1398 putative peptidase; peptidase M23B 1432667 4686076 Pnap_1342 Polaromonas naphthalenivorans CJ2 peptidase M23B YP_981578.1 1431777 R 365044 CDS YP_981579.1 121604250 4686374 complement(1432806..1434041) 1 NC_008781.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pca:Pcar_2388 dehydrogenases (flavoproteins)-like; geranylgeranyl reductase 1434041 4686374 Pnap_1343 Polaromonas naphthalenivorans CJ2 geranylgeranyl reductase YP_981579.1 1432806 R 365044 CDS YP_981580.1 121604251 4686444 complement(1434192..1434410) 1 NC_008781.1 KEGG: pol:Bpro_3354 hypothetical protein; hypothetical protein 1434410 4686444 Pnap_1344 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981580.1 1434192 R 365044 CDS YP_981581.1 121604252 4686401 complement(1434642..1434809) 1 NC_008781.1 KEGG: pol:Bpro_5352 DNA polymerase, beta-like region; DNA polymerase, beta-like region 1434809 4686401 Pnap_1345 Polaromonas naphthalenivorans CJ2 DNA polymerase, beta-like region YP_981581.1 1434642 R 365044 CDS YP_981582.1 121604253 4686393 complement(1435252..1435461) 1 NC_008781.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cold shock domain family protein; cold-shock DNA-binding domain-containing protein 1435461 4686393 Pnap_1346 Polaromonas naphthalenivorans CJ2 cold-shock DNA-binding domain-containing protein YP_981582.1 1435252 R 365044 CDS YP_981583.1 121604254 4686451 complement(1435451..1436080) 1 NC_008781.1 KEGG: retron reverse transcriptase; retron reverse transcriptase 1436080 4686451 Pnap_1347 Polaromonas naphthalenivorans CJ2 retron reverse transcriptase YP_981583.1 1435451 R 365044 CDS YP_981584.1 121604255 4686171 complement(1436121..1436630) 1 NC_008781.1 KEGG: retron reverse transcriptase; retron reverse transcriptase 1436630 4686171 Pnap_1348 Polaromonas naphthalenivorans CJ2 retron reverse transcriptase YP_981584.1 1436121 R 365044 CDS YP_981585.1 121604256 4686525 complement(1437305..1437496) 1 NC_008781.1 KEGG: eba:p1B34 hypothetical protein; hypothetical protein 1437496 4686525 Pnap_1349 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981585.1 1437305 R 365044 CDS YP_981586.1 121604257 4686563 complement(1437493..1437747) 1 NC_008781.1 KEGG: eba:p1B35 hypothetical protein; hypothetical protein 1437747 4686563 Pnap_1350 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981586.1 1437493 R 365044 CDS YP_981587.1 121604258 4686573 complement(1437747..1439624) 1 NC_008781.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1439624 4686573 Pnap_1351 Polaromonas naphthalenivorans CJ2 glutaminyl-tRNA synthetase YP_981587.1 1437747 R 365044 CDS YP_981588.1 121604259 4686569 1439759..1440211 1 NC_008781.1 KEGG: pol:Bpro_3349 hypothetical protein; hypothetical protein 1440211 4686569 Pnap_1352 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981588.1 1439759 D 365044 CDS YP_981589.1 121604260 4686610 complement(1440339..1440929) 1 NC_008781.1 KEGG: hypothetical protein; hypothetical protein 1440929 4686610 Pnap_1353 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981589.1 1440339 R 365044 CDS YP_981590.1 121604261 4686618 1441308..1442366 1 NC_008781.1 PFAM: porin, Gram-negative type; KEGG: bur:Bcep18194_A4837 outer membrane protein, (porin); porin 1442366 4686618 Pnap_1354 Polaromonas naphthalenivorans CJ2 porin YP_981590.1 1441308 D 365044 CDS YP_981591.1 121604262 4686627 complement(1442521..1443168) 1 NC_008781.1 PFAM: protein of unknown function DUF924; KEGG: pol:Bpro_3345 protein of unknown function DUF924; hypothetical protein 1443168 4686627 Pnap_1355 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981591.1 1442521 R 365044 CDS YP_981592.1 121604263 4686218 1443279..1444112 1 NC_008781.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1444112 4686218 Pnap_1356 Polaromonas naphthalenivorans CJ2 undecaprenyl pyrophosphate phosphatase YP_981592.1 1443279 D 365044 CDS YP_981593.1 121604264 4686628 complement(1444121..1444972) 1 NC_008781.1 KEGG: pol:Bpro_3339 hypothetical protein; hypothetical protein 1444972 4686628 Pnap_1357 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981593.1 1444121 R 365044 CDS YP_981594.1 121604265 4687288 complement(1445050..1445877) 1 NC_008781.1 PFAM: 20S proteasome, A and B subunits; KEGG: pol:Bpro_3338 20S proteasome, A and B subunits; 20S proteasome subunits A/B 1445877 4687288 Pnap_1358 Polaromonas naphthalenivorans CJ2 20S proteasome subunits A/B YP_981594.1 1445050 R 365044 CDS YP_981595.1 121604266 4686631 complement(1445917..1448529) 1 NC_008781.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1448529 4686631 Pnap_1359 Polaromonas naphthalenivorans CJ2 DNA mismatch repair protein MutS YP_981595.1 1445917 R 365044 CDS YP_981596.1 121604267 4687293 complement(1448698..1449588) 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_3621 protein of unknown function DUF6, transmembrane; hypothetical protein 1449588 4687293 Pnap_1360 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981596.1 1448698 R 365044 CDS YP_981597.1 121604268 4687196 1449679..1450593 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_3620 transcriptional regulator, LysR family; LysR family transcriptional regulator 1450593 4687196 Pnap_1361 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981597.1 1449679 D 365044 CDS YP_981598.1 121604269 4687301 1450788..1451132 1 NC_008781.1 KEGG: eba:ebD75 hypothetical protein; hypothetical protein 1451132 4687301 Pnap_1362 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981598.1 1450788 D 365044 CDS YP_981599.1 121604270 4687299 1451152..1451562 1 NC_008781.1 KEGG: eba:ebD76 hypothetical protein; hypothetical protein 1451562 4687299 Pnap_1363 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981599.1 1451152 D 365044 CDS YP_981600.1 121604271 4687315 1452343..1453125 1 NC_008781.1 KEGG: pol:Bpro_2723 hypothetical protein; hypothetical protein 1453125 4687315 Pnap_1364 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981600.1 1452343 D 365044 CDS YP_981601.1 121604272 4687174 complement(1453157..1455391) 1 NC_008781.1 PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: rme:Rmet_3187 protein of unknown function DUF893, YccS/YhfK; hypothetical protein 1455391 4687174 Pnap_1365 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981601.1 1453157 R 365044 CDS YP_981602.1 121604273 4686581 1455776..1456588 1 NC_008781.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_3310 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1456588 4686581 Pnap_1366 Polaromonas naphthalenivorans CJ2 phospholipid/glycerol acyltransferase YP_981602.1 1455776 D 365044 CDS YP_981603.1 121604274 4687372 1456602..1457414 1 NC_008781.1 PFAM: glycosyl transferase, family 2; KEGG: pol:Bpro_3309 glycosyl transferase, family 2; glycosyl transferase family protein 1457414 4687372 Pnap_1367 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_981603.1 1456602 D 365044 CDS YP_981604.1 121604275 4687400 complement(1457411..1458148) 1 NC_008781.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1458148 fabG 4687400 fabG Polaromonas naphthalenivorans CJ2 3-ketoacyl-ACP reductase YP_981604.1 1457411 R 365044 CDS YP_981605.1 121604276 4687443 complement(1458145..1458600) 1 NC_008781.1 KEGG: pol:Bpro_3306 hypothetical protein; hypothetical protein 1458600 4687443 Pnap_1369 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981605.1 1458145 R 365044 CDS YP_981606.1 121604277 4687417 complement(1458669..1459505) 1 NC_008781.1 KEGG: pol:Bpro_3305 hypothetical protein; hypothetical protein 1459505 4687417 Pnap_1370 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981606.1 1458669 R 365044 CDS YP_981607.1 121604278 4687209 complement(1459537..1460634) 1 NC_008781.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1460634 4687209 Pnap_1371 Polaromonas naphthalenivorans CJ2 3-oxoacyl-ACP synthase YP_981607.1 1459537 R 365044 CDS YP_981608.1 121604279 4687644 complement(1460764..1461486) 1 NC_008781.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: pol:Bpro_3303 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 1461486 4687644 Pnap_1372 Polaromonas naphthalenivorans CJ2 PA-phosphatase-like phosphoesterase YP_981608.1 1460764 R 365044 CDS YP_981609.1 121604280 4689294 complement(1461483..1462286) 1 NC_008781.1 PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_3302 polysaccharide deacetylase; polysaccharide deacetylase 1462286 4689294 Pnap_1373 Polaromonas naphthalenivorans CJ2 polysaccharide deacetylase YP_981609.1 1461483 R 365044 CDS YP_981610.1 121604281 4686151 complement(1462279..1464615) 1 NC_008781.1 KEGG: pol:Bpro_3301 hypothetical protein; hypothetical protein 1464615 4686151 Pnap_1374 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981610.1 1462279 R 365044 CDS YP_981611.1 121604282 4686596 complement(1464624..1465274) 1 NC_008781.1 KEGG: pol:Bpro_3300 putative transmembrane protein; hypothetical protein 1465274 4686596 Pnap_1375 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981611.1 1464624 R 365044 CDS YP_981612.1 121604283 4687282 complement(1465278..1466258) 1 NC_008781.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_3299 putative lauroyl/myristoyl acyltransferase involved in LPS biosynthesis; lipid A biosynthesis acyltransferase 1466258 4687282 Pnap_1376 Polaromonas naphthalenivorans CJ2 lipid A biosynthesis acyltransferase YP_981612.1 1465278 R 365044 CDS YP_981613.1 121604284 4688026 complement(1467915..1468595) 1 NC_008781.1 KEGG: rso:RSc0433 probable transmembrane protein; hypothetical protein 1468595 4688026 Pnap_1378 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981613.1 1467915 R 365044 CDS YP_981614.1 121604285 4687528 complement(1468592..1468888) 1 NC_008781.1 KEGG: pol:Bpro_3295 acyl carrier protein; acyl carrier protein 1468888 4687528 Pnap_1379 Polaromonas naphthalenivorans CJ2 acyl carrier protein YP_981614.1 1468592 R 365044 CDS YP_981615.1 121604286 4689485 complement(1468973..1469965) 1 NC_008781.1 PFAM: inositol monophosphatase; KEGG: pol:Bpro_3293 inositol-1(or 4)-monophosphatase; inositol-phosphate phosphatase 1469965 4689485 Pnap_1380 Polaromonas naphthalenivorans CJ2 inositol-phosphate phosphatase YP_981615.1 1468973 R 365044 CDS YP_981616.1 121604287 4686185 1470027..1470962 1 NC_008781.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_3292 RNA methyltransferase TrmH, group 1; tRNA/rRNA methyltransferase SpoU 1470962 4686185 Pnap_1381 Polaromonas naphthalenivorans CJ2 tRNA/rRNA methyltransferase SpoU YP_981616.1 1470027 D 365044 CDS YP_981617.1 121604288 4687498 1470972..1471751 1 NC_008781.1 TIGRFAM: serine O-acetyltransferase; KEGG: pol:Bpro_3291 serine O-acetyltransferase; serine O-acetyltransferase 1471751 4687498 Pnap_1382 Polaromonas naphthalenivorans CJ2 serine O-acetyltransferase YP_981617.1 1470972 D 365044 CDS YP_981618.1 121604289 4687892 complement(1471832..1472431) 1 NC_008781.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: pol:Bpro_3289 molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein 1472431 4687892 Pnap_1383 Polaromonas naphthalenivorans CJ2 molybdenum cofactor synthesis domain-containing protein YP_981618.1 1471832 R 365044 CDS YP_981619.1 121604290 4689234 complement(1472428..1473036) 1 NC_008781.1 PFAM: protein of unknown function DUF615; KEGG: pol:Bpro_3288 protein of unknown function DUF615; hypothetical protein 1473036 4689234 Pnap_1384 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981619.1 1472428 R 365044 CDS YP_981620.1 121604291 4686150 1473043..1474452 1 NC_008781.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pol:Bpro_3287 peptidase U62, modulator of DNA gyrase; C69 family peptidase 1474452 4686150 Pnap_1385 Polaromonas naphthalenivorans CJ2 C69 family peptidase YP_981620.1 1473043 D 365044 CDS YP_981621.1 121604292 4688095 1474535..1475341 1 NC_008781.1 KEGG: pol:Bpro_3286 hypothetical protein; hypothetical protein 1475341 4688095 Pnap_1386 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981621.1 1474535 D 365044 CDS YP_981622.1 121604293 4688611 complement(1475342..1475803) 1 NC_008781.1 PFAM: GatB/Yqey domain protein; KEGG: pol:Bpro_3285 GatB/YqeY; GatB/Yqey domain-containing protein 1475803 4688611 Pnap_1387 Polaromonas naphthalenivorans CJ2 GatB/Yqey domain-containing protein YP_981622.1 1475342 R 365044 CDS YP_981623.1 121604294 4689300 complement(1475926..1476138) 1 NC_008781.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1476138 rpsU 4689300 rpsU Polaromonas naphthalenivorans CJ2 30S ribosomal protein S21 YP_981623.1 1475926 R 365044 CDS YP_981624.1 121604295 4686843 complement(1476254..1476355) 1 NC_008781.1 KEGG: pol:Bpro_3283 HI0933-like protein; hypothetical protein 1476355 4686843 Pnap_1389 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981624.1 1476254 R 365044 CDS YP_981625.1 121604296 4689964 1476394..1476699 1 NC_008781.1 KEGG: bbr:BB3160 hypothetical protein; hypothetical protein 1476699 4689964 Pnap_1390 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981625.1 1476394 D 365044 CDS YP_981626.1 121604297 4686074 1476696..1477079 1 NC_008781.1 KEGG: bbr:BB3159 hypothetical protein; hypothetical protein 1477079 4686074 Pnap_1391 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981626.1 1476696 D 365044 CDS YP_981627.1 121604298 4690139 complement(1477185..1477403) 1 NC_008781.1 KEGG: csa:Csal_2436 cell divisionFtsK/SpoIIIE; cell division protein FtsK 1477403 4690139 Pnap_1392 Polaromonas naphthalenivorans CJ2 cell division protein FtsK YP_981627.1 1477185 R 365044 CDS YP_981628.1 121604299 4686213 complement(1477520..1478557) 1 NC_008781.1 KEGG: xom:XOO_3993 ISXo7 transposase; ISXo7 transposase 1478557 4686213 Pnap_1393 Polaromonas naphthalenivorans CJ2 ISXo7 transposase YP_981628.1 1477520 R 365044 CDS YP_981629.1 121604300 4686959 1478823..1480103 1 NC_008781.1 PFAM: transposase, IS4 family protein; KEGG: bxe:Bxe_C0019 putative transposase; transposase, IS4 family protein 1480103 4686959 Pnap_1394 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_981629.1 1478823 D 365044 CDS YP_981630.1 121604301 4688961 1480308..1481375 1 NC_008781.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1481375 4688961 Pnap_1395 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_981630.1 1480308 D 365044 CDS YP_981631.1 121604302 4687783 1481747..1482787 1 NC_008781.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bxe:Bxe_C0485 putative transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1482787 4687783 Pnap_1396 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_981631.1 1481747 D 365044 CDS YP_981632.1 121604303 4687770 1482910..1483149 1 NC_008781.1 hypothetical protein 1483149 4687770 Pnap_1397 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981632.1 1482910 D 365044 CDS YP_981633.1 121604304 4687759 complement(1483192..1484097) 1 NC_008781.1 KEGG: vvu:VV20627 hypothetical protein; hypothetical protein 1484097 4687759 Pnap_1398 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981633.1 1483192 R 365044 CDS YP_981634.1 121604305 4686088 complement(1484130..1484375) 1 NC_008781.1 hypothetical protein 1484375 4686088 Pnap_1399 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981634.1 1484130 R 365044 CDS YP_981635.1 121604306 4686450 complement(1484455..1485702) 1 NC_008781.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_3283 HI0933-like protein; hypothetical protein 1485702 4686450 Pnap_1400 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981635.1 1484455 R 365044 CDS YP_981636.1 121604307 4686565 complement(1485847..1486839) 1 NC_008781.1 KEGG: pol:Bpro_3282 hypothetical protein; hypothetical protein 1486839 4686565 Pnap_1401 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981636.1 1485847 R 365044 CDS YP_981637.1 121604308 4686622 complement(1486906..1487691) 1 NC_008781.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_3281 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 1487691 4686622 Pnap_1402 Polaromonas naphthalenivorans CJ2 uroporphyrin-III C-methyltransferase YP_981637.1 1486906 R 365044 CDS YP_981638.1 121604309 4687169 complement(1487688..1488593) 1 NC_008781.1 PFAM: glycosyl transferase, family 3; KEGG: pol:Bpro_3280 glycosyl transferase, family 3; glycosyl transferase family protein 1488593 4687169 Pnap_1403 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_981638.1 1487688 R 365044 CDS YP_981639.1 121604310 4687804 complement(1488647..1491514) 1 NC_008781.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3279 molybdopterin oxidoreductase; molybdopterin oxidoreductase 1491514 4687804 Pnap_1404 Polaromonas naphthalenivorans CJ2 molybdopterin oxidoreductase YP_981639.1 1488647 R 365044 CDS YP_981640.1 121604311 4688352 complement(1491545..1491967) 1 NC_008781.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3278 nitrite reductase (NAD(P)H) large subunit, NirD; nitrite reductase (NAD(P)H) small subunit 1491967 4688352 Pnap_1405 Polaromonas naphthalenivorans CJ2 nitrite reductase (NAD(P)H) small subunit YP_981640.1 1491545 R 365044 CDS YP_981641.1 121604312 4687791 complement(1491984..1492775) 1 NC_008781.1 KEGG: pol:Bpro_3277 hypothetical protein; hypothetical protein 1492775 4687791 Pnap_1406 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981641.1 1491984 R 365044 CDS YP_981642.1 121604313 4687816 complement(1492784..1495231) 1 NC_008781.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rfr:Rfer_2557 nitrite reductase (NAD(P)H) large subunit, NirB; nitrite reductase (NAD(P)H) large subunit 1495231 4687816 Pnap_1407 Polaromonas naphthalenivorans CJ2 nitrite reductase (NAD(P)H) large subunit YP_981642.1 1492784 R 365044 CDS YP_981643.1 121604314 4687868 complement(1495430..1495678) 1 NC_008781.1 hypothetical protein 1495678 4687868 Pnap_1408 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981643.1 1495430 R 365044 CDS YP_981644.1 121604315 4689167 1495741..1496181 1 NC_008781.1 PFAM: CBS domain containing protein; KEGG: bxe:Bxe_B1676 signal-transduction protein containing CBS domains; signal-transduction protein 1496181 4689167 Pnap_1409 Polaromonas naphthalenivorans CJ2 signal-transduction protein YP_981644.1 1495741 D 365044 CDS YP_981645.1 121604316 4689211 1496276..1498024 1 NC_008781.1 PFAM: protein kinase; protein phosphatase 2C domain protein; SMART: serine/threonine protein kinase; KEGG: pol:Bpro_3274 protein serine/threonine phosphatases; protein kinase 1498024 4689211 Pnap_1410 Polaromonas naphthalenivorans CJ2 protein kinase YP_981645.1 1496276 D 365044 CDS YP_981646.1 121604317 4690077 complement(1498112..1499413) 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3273 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1499413 4690077 Pnap_1411 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_981646.1 1498112 R 365044 CDS YP_981647.1 121604318 4689960 complement(1499478..1500293) 1 NC_008781.1 KEGG: pol:Bpro_3269 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPases C and D 1500293 4689960 Pnap_1412 Polaromonas naphthalenivorans CJ2 nitrate ABC transporter ATPases C and D YP_981647.1 1499478 R 365044 CDS YP_981648.1 121604319 4689889 complement(1500322..1501257) 1 NC_008781.1 TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3268 nitrate transport permease; nitrate ABC transporter inner membrane subunit 1501257 4689889 Pnap_1413 Polaromonas naphthalenivorans CJ2 nitrate ABC transporter inner membrane subunit YP_981648.1 1500322 R 365044 CDS YP_981649.1 121604320 4689636 complement(1501304..1502548) 1 NC_008781.1 KEGG: pol:Bpro_3267 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 1502548 4689636 Pnap_1414 Polaromonas naphthalenivorans CJ2 twin-arginine translocation pathway signal protein YP_981649.1 1501304 R 365044 CDS YP_981650.1 121604321 4688453 complement(1502889..1503521) 1 NC_008781.1 PFAM: ANTAR domain protein; KEGG: pol:Bpro_3266 response regulator receiver (CheY-like) and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 1503521 4688453 Pnap_1415 Polaromonas naphthalenivorans CJ2 response regulator receiver/ANTAR domain-containing protein YP_981650.1 1502889 R 365044 CDS YP_981651.1 121604322 4688505 1503628..1504698 1 NC_008781.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1504698 4688505 Pnap_1416 Polaromonas naphthalenivorans CJ2 putative DNA-binding/iron metalloprotein/AP endonuclease YP_981651.1 1503628 D 365044 CDS YP_981652.1 121604323 4687524 1504783..1506048 1 NC_008781.1 KEGG: pol:Bpro_3263 putative transporter signal peptide protein; putative transporter signal peptide protein 1506048 4687524 Pnap_1417 Polaromonas naphthalenivorans CJ2 putative transporter signal peptide protein YP_981652.1 1504783 D 365044 CDS YP_981653.1 121604324 4686978 1506091..1507245 1 NC_008781.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1507245 4686978 Pnap_1418 Polaromonas naphthalenivorans CJ2 aspartate aminotransferase YP_981653.1 1506091 D 365044 CDS YP_981654.1 121604325 4687626 1507384..1507650 1 NC_008781.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1507650 rpsO 4687626 rpsO Polaromonas naphthalenivorans CJ2 30S ribosomal protein S15 YP_981654.1 1507384 D 365044 CDS YP_981655.1 121604326 4687008 1507927..1510038 1 NC_008781.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: pol:Bpro_3260 polyribonucleotide nucleotidyltransferase; polynucleotide phosphorylase/polyadenylase 1510038 4687008 Pnap_1420 Polaromonas naphthalenivorans CJ2 polynucleotide phosphorylase/polyadenylase YP_981655.1 1507927 D 365044 CDS YP_981656.1 121604327 4687600 1510116..1511102 1 NC_008781.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_3259 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 1511102 4687600 Pnap_1421 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_981656.1 1510116 D 365044 CDS YP_981657.1 121604328 4689823 1511157..1511885 1 NC_008781.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1511885 tpiA 4689823 tpiA Polaromonas naphthalenivorans CJ2 triosephosphate isomerase YP_981657.1 1511157 D 365044 CDS YP_981658.1 121604329 4689244 1511919..1512329 1 NC_008781.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pol:Bpro_3257 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1512329 secG 4689244 secG Polaromonas naphthalenivorans CJ2 preprotein translocase subunit SecG YP_981658.1 1511919 D 365044 CDS YP_981659.1 121604330 4688052 1512659..1513018 1 NC_008781.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: pol:Bpro_3256 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 1513018 4688052 Pnap_1424 Polaromonas naphthalenivorans CJ2 NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 YP_981659.1 1512659 D 365044 CDS YP_981660.1 121604331 4687908 1513058..1513537 1 NC_008781.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1513537 4687908 Pnap_1425 Polaromonas naphthalenivorans CJ2 NADH dehydrogenase subunit B YP_981660.1 1513058 D 365044 CDS YP_981661.1 121604332 4686118 1513537..1514151 1 NC_008781.1 KEGG: pol:Bpro_3254 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C 1514151 4686118 Pnap_1426 Polaromonas naphthalenivorans CJ2 NADH (or F420H2) dehydrogenase subunit C YP_981661.1 1513537 D 365044 CDS YP_981662.1 121604333 4686098 1514175..1515428 1 NC_008781.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1515428 4686098 Pnap_1427 Polaromonas naphthalenivorans CJ2 NADH dehydrogenase subunit D YP_981662.1 1514175 D 365044 CDS YP_981663.1 121604334 4686248 1515433..1515930 1 NC_008781.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: pol:Bpro_3252 NADH-quinone oxidoreductase, E subunit; NADH-quinone oxidoreductase subunit E 1515930 4686248 Pnap_1428 Polaromonas naphthalenivorans CJ2 NADH-quinone oxidoreductase subunit E YP_981663.1 1515433 D 365044 CDS YP_981664.1 121604335 4687245 1515936..1517357 1 NC_008781.1 KEGG: pol:Bpro_3251 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH-quinone oxidoreductase subunit F 1517357 4687245 Pnap_1429 Polaromonas naphthalenivorans CJ2 NADH-quinone oxidoreductase subunit F YP_981664.1 1515936 D 365044 CDS YP_981665.1 121604336 4687845 1517376..1519520 1 NC_008781.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1519520 4687845 Pnap_1430 Polaromonas naphthalenivorans CJ2 NADH dehydrogenase subunit G YP_981665.1 1517376 D 365044 CDS YP_981666.1 121604337 4690022 1519553..1520596 1 NC_008781.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: pol:Bpro_3249 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 1520596 4690022 Pnap_1431 Polaromonas naphthalenivorans CJ2 respiratory-chain NADH dehydrogenase subunit 1 YP_981666.1 1519553 D 365044 CDS YP_981667.1 121604338 4689893 1520608..1521105 1 NC_008781.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1521105 4689893 Pnap_1432 Polaromonas naphthalenivorans CJ2 NADH dehydrogenase subunit I YP_981667.1 1520608 D 365044 CDS YP_981668.1 121604339 4687021 1521150..1521797 1 NC_008781.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: pol:Bpro_3247 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 1521797 4687021 Pnap_1433 Polaromonas naphthalenivorans CJ2 NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 YP_981668.1 1521150 D 365044 CDS YP_981669.1 121604340 4688305 1521794..1522102 1 NC_008781.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: pol:Bpro_3246 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 1522102 4688305 Pnap_1434 Polaromonas naphthalenivorans CJ2 NADH-ubiquinone oxidoreductase subunit 4L YP_981669.1 1521794 D 365044 CDS YP_981670.1 121604341 4689728 1522111..1524135 1 NC_008781.1 KEGG: pol:Bpro_3245 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1524135 4689728 Pnap_1435 Polaromonas naphthalenivorans CJ2 proton-translocating NADH-quinone oxidoreductase subunit L YP_981670.1 1522111 D 365044 CDS YP_981671.1 121604342 4690153 1524167..1525642 1 NC_008781.1 KEGG: pol:Bpro_3244 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1525642 4690153 Pnap_1436 Polaromonas naphthalenivorans CJ2 proton-translocating NADH-quinone oxidoreductase subunit M YP_981671.1 1524167 D 365044 CDS YP_981672.1 121604343 4688588 1525662..1527164 1 NC_008781.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1527164 4688588 Pnap_1437 Polaromonas naphthalenivorans CJ2 NADH dehydrogenase subunit N YP_981672.1 1525662 D 365044 CDS YP_981673.1 121604344 4688161 1527167..1527469 1 NC_008781.1 KEGG: pol:Bpro_3242 putative transmembrane protein; hypothetical protein 1527469 4688161 Pnap_1438 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981673.1 1527167 D 365044 CDS YP_981674.1 121604345 4688019 1527466..1528080 1 NC_008781.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3241 NUDIX hydrolase; NUDIX hydrolase 1528080 4688019 Pnap_1439 Polaromonas naphthalenivorans CJ2 NUDIX hydrolase YP_981674.1 1527466 D 365044 CDS YP_981675.1 121604346 4686261 1528102..1528629 1 NC_008781.1 PFAM: protein of unknown function DUF1178; KEGG: pol:Bpro_3240 protein of unknown function DUF1178; hypothetical protein 1528629 4686261 Pnap_1440 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981675.1 1528102 D 365044 CDS YP_981676.1 121604347 4688078 complement(1528701..1530020) 1 NC_008781.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: pol:Bpro_3239 Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase 1530020 4688078 Pnap_1441 Polaromonas naphthalenivorans CJ2 Glu/Leu/Phe/Val dehydrogenase YP_981676.1 1528701 R 365044 CDS YP_981677.1 121604348 4686681 complement(1530152..1531972) 1 NC_008781.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related; ABC transporter-like protein 1531972 4686681 Pnap_1442 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981677.1 1530152 R 365044 CDS YP_981678.1 121604349 4687250 1532051..1532587 1 NC_008781.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3237 transcriptional regulator, MarR family; MarR family transcriptional regulator 1532587 4687250 Pnap_1443 Polaromonas naphthalenivorans CJ2 MarR family transcriptional regulator YP_981678.1 1532051 D 365044 CDS YP_981679.1 121604350 4688698 1532655..1534169 1 NC_008781.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3236 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 1534169 4688698 Pnap_1444 Polaromonas naphthalenivorans CJ2 RND efflux system outer membrane lipoprotein YP_981679.1 1532655 D 365044 CDS YP_981680.1 121604351 4687772 1534247..1535581 1 NC_008781.1 PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3235 secretion protein HlyD; secretion protein HlyD family protein 1535581 4687772 Pnap_1445 Polaromonas naphthalenivorans CJ2 secretion protein HlyD family protein YP_981680.1 1534247 D 365044 CDS YP_981681.1 121604352 4690098 1535629..1537203 1 NC_008781.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3234 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 1537203 4690098 Pnap_1446 Polaromonas naphthalenivorans CJ2 EmrB/QacA family drug resistance transporter YP_981681.1 1535629 D 365044 CDS YP_981682.1 121604353 4689623 complement(1537321..1538331) 1 NC_008781.1 PFAM: luciferase family protein; KEGG: dar:Daro_1097 luciferase-like; luciferase family protein 1538331 4689623 Pnap_1447 Polaromonas naphthalenivorans CJ2 luciferase family protein YP_981682.1 1537321 R 365044 CDS YP_981683.1 121604354 4686126 complement(1538469..1539428) 1 NC_008781.1 PFAM: regulatory protein, MerR; KEGG: reu:Reut_C6238 regulatory protein, MerR; MerR family transcriptional regulator 1539428 4686126 Pnap_1448 Polaromonas naphthalenivorans CJ2 MerR family transcriptional regulator YP_981683.1 1538469 R 365044 CDS YP_981684.1 121604355 4686547 1539680..1540984 1 NC_008781.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bur:Bcep18194_C6583 FAD dependent oxidoreductase; amine oxidase 1540984 4686547 Pnap_1449 Polaromonas naphthalenivorans CJ2 amine oxidase YP_981684.1 1539680 D 365044 CDS YP_981685.1 121604356 4689377 1540981..1541766 1 NC_008781.1 PFAM: protein of unknown function DUF1365; KEGG: cvi:CV3225 hypothetical protein; hypothetical protein 1541766 4689377 Pnap_1450 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981685.1 1540981 D 365044 CDS YP_981686.1 121604357 4686544 1541800..1543032 1 NC_008781.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_0492 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1543032 4686544 Pnap_1451 Polaromonas naphthalenivorans CJ2 cyclopropane-fatty-acyl-phospholipid synthase YP_981686.1 1541800 D 365044 CDS YP_981687.1 121604358 4687247 1543029..1543583 1 NC_008781.1 KEGG: hypothetical protein; hypothetical protein 1543583 4687247 Pnap_1452 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981687.1 1543029 D 365044 CDS YP_981688.1 121604359 4687018 1543580..1544938 1 NC_008781.1 KEGG: dar:Daro_0494 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1544938 4687018 Pnap_1453 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_981688.1 1543580 D 365044 CDS YP_981689.1 121604360 4686765 1544935..1545471 1 NC_008781.1 KEGG: dar:Daro_0495 lipoprotein, putative; putative lipoprotein 1545471 4686765 Pnap_1454 Polaromonas naphthalenivorans CJ2 putative lipoprotein YP_981689.1 1544935 D 365044 CDS YP_981690.1 121604361 4687257 1545476..1546258 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: dar:Daro_0496 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1546258 4687257 Pnap_1455 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_981690.1 1545476 D 365044 CDS YP_981691.1 121604362 4689911 1546262..1546714 1 NC_008781.1 KEGG: dar:Daro_0497 hypothetical protein; hypothetical protein 1546714 4689911 Pnap_1456 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981691.1 1546262 D 365044 CDS YP_981692.1 121604363 4688278 1546740..1547312 1 NC_008781.1 PFAM: Lipocalin family protein; KEGG: xcb:XC_1682 outer membrane lipoprotein; lipocalin family protein 1547312 4688278 Pnap_1457 Polaromonas naphthalenivorans CJ2 lipocalin family protein YP_981692.1 1546740 D 365044 CDS YP_981693.1 121604364 4689069 complement(1547440..1548558) 1 NC_008781.1 KEGG: pol:Bpro_3228 secreted hydrolase-like; secreted hydrolase-like protein 1548558 4689069 Pnap_1458 Polaromonas naphthalenivorans CJ2 secreted hydrolase-like protein YP_981693.1 1547440 R 365044 CDS YP_981694.1 121604365 4688994 complement(1548560..1549018) 1 NC_008781.1 KEGG: pol:Bpro_1688 hypothetical protein; hypothetical protein 1549018 4688994 Pnap_1459 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981694.1 1548560 R 365044 CDS YP_981695.1 121604366 4689959 complement(1549027..1549563) 1 NC_008781.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1689 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1549563 4689959 Pnap_1460 Polaromonas naphthalenivorans CJ2 N-acetyltransferase GCN5 YP_981695.1 1549027 R 365044 CDS YP_981696.1 121604367 4690162 1549769..1550044 1 NC_008781.1 PFAM: ribosomal protein S16; KEGG: pol:Bpro_1690 ribosomal protein S16; 30S ribosomal protein S16 1550044 4690162 Pnap_1461 Polaromonas naphthalenivorans CJ2 30S ribosomal protein S16 YP_981696.1 1549769 D 365044 CDS YP_981697.1 121604368 4689293 1550061..1550669 1 NC_008781.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1550669 rimM 4689293 rimM Polaromonas naphthalenivorans CJ2 16S rRNA-processing protein RimM YP_981697.1 1550061 D 365044 CDS YP_981698.1 121604369 4688844 1550737..1551519 1 NC_008781.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1551519 trmD 4688844 trmD Polaromonas naphthalenivorans CJ2 tRNA (guanine-N(1)-)-methyltransferase YP_981698.1 1550737 D 365044 CDS YP_981699.1 121604370 4688136 1551653..1552045 1 NC_008781.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1552045 rplS 4688136 rplS Polaromonas naphthalenivorans CJ2 50S ribosomal protein L19 YP_981699.1 1551653 D 365044 CDS YP_981700.1 121604371 4687997 1552115..1552828 1 NC_008781.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_1694 NUDIX hydrolase; NUDIX hydrolase 1552828 4687997 Pnap_1465 Polaromonas naphthalenivorans CJ2 NUDIX hydrolase YP_981700.1 1552115 D 365044 CDS YP_981701.1 121604372 4686689 1552901..1553920 1 NC_008781.1 KEGG: pol:Bpro_1695 hypothetical protein; hypothetical protein 1553920 4686689 Pnap_1466 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981701.1 1552901 D 365044 CDS YP_981702.1 121604373 4686513 complement(1553946..1554854) 1 NC_008781.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: pol:Bpro_1697 GTPase EngC; ribosome small subunit-dependent GTPase A 1554854 4686513 Pnap_1467 Polaromonas naphthalenivorans CJ2 ribosome small subunit-dependent GTPase A YP_981702.1 1553946 R 365044 CDS YP_981703.1 121604374 4688892 complement(1554914..1555234) 1 NC_008781.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: pol:Bpro_1698 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 1555234 4688892 Pnap_1468 Polaromonas naphthalenivorans CJ2 transcriptional coactivator/pterin dehydratase YP_981703.1 1554914 R 365044 CDS YP_981704.1 121604375 4686467 complement(1555231..1556520) 1 NC_008781.1 PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_1699 STE24 endopeptidase; Ste24 endopeptidase 1556520 4686467 Pnap_1469 Polaromonas naphthalenivorans CJ2 Ste24 endopeptidase YP_981704.1 1555231 R 365044 CDS YP_981705.1 121604376 4687478 1556556..1557119 1 NC_008781.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1557119 4687478 Pnap_1470 Polaromonas naphthalenivorans CJ2 oligoribonuclease YP_981705.1 1556556 D 365044 CDS YP_981706.1 121604377 4688779 1557514..1559463 1 NC_008781.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_1701 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 1559463 4688779 Pnap_1471 Polaromonas naphthalenivorans CJ2 DEAD/DEAH box helicase YP_981706.1 1557514 D 365044 CDS YP_981707.1 121604378 4689530 complement(1559559..1560536) 1 NC_008781.1 TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: pol:Bpro_1718 guanosine monophosphate reductase; guanosine 5'-monophosphate oxidoreductase 1560536 4689530 Pnap_1472 Polaromonas naphthalenivorans CJ2 guanosine 5'-monophosphate oxidoreductase YP_981707.1 1559559 R 365044 CDS YP_981708.1 121604379 4689763 complement(1560737..1561408) 1 NC_008781.1 KEGG: pol:Bpro_1719 hypothetical protein; hypothetical protein 1561408 4689763 Pnap_1473 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981708.1 1560737 R 365044 CDS YP_981709.1 121604380 4688981 1561555..1563900 1 NC_008781.1 PFAM: UvrD/REP helicase; KEGG: pol:Bpro_1723 UvrD/REP helicase; UvrD/REP helicase 1563900 4688981 Pnap_1474 Polaromonas naphthalenivorans CJ2 UvrD/REP helicase YP_981709.1 1561555 D 365044 CDS YP_981710.1 121604381 4686873 complement(1563917..1564708) 1 NC_008781.1 KEGG: pol:Bpro_1726 hypothetical protein; hypothetical protein 1564708 4686873 Pnap_1475 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981710.1 1563917 R 365044 CDS YP_981711.1 121604382 4686674 complement(1564748..1565698) 1 NC_008781.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 1565698 4686674 Pnap_1476 Polaromonas naphthalenivorans CJ2 homoserine kinase YP_981711.1 1564748 R 365044 CDS YP_981712.1 121604383 4689767 complement(1565735..1566133) 1 NC_008781.1 KEGG: pol:Bpro_1728 hypothetical protein; hypothetical protein 1566133 4689767 Pnap_1477 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981712.1 1565735 R 365044 CDS YP_981713.1 121604384 4689922 1566249..1569074 1 NC_008781.1 KEGG: pol:Bpro_1729 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 1569074 4689922 Pnap_1478 Polaromonas naphthalenivorans CJ2 DNA polymerase I YP_981713.1 1566249 D 365044 CDS YP_981714.1 121604385 4687573 complement(1569092..1569568) 1 NC_008781.1 KEGG: bur:Bcep18194_B0200 integral membrane protein-like; integral membrane protein 1569568 4687573 Pnap_1479 Polaromonas naphthalenivorans CJ2 integral membrane protein YP_981714.1 1569092 R 365044 CDS YP_981715.1 121604386 4689765 complement(1569565..1569951) 1 NC_008781.1 KEGG: mfa:Mfla_1438 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1569951 4689765 Pnap_1480 Polaromonas naphthalenivorans CJ2 NAD-dependent epimerase/dehydratase YP_981715.1 1569565 R 365044 CDS YP_981716.1 121604387 4687065 complement(1569948..1570865) 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: bur:Bcep18194_B0199 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1570865 4687065 Pnap_1481 Polaromonas naphthalenivorans CJ2 NAD-dependent epimerase/dehydratase YP_981716.1 1569948 R 365044 CDS YP_981717.1 121604388 4686861 complement(1570884..1571396) 1 NC_008781.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: bur:Bcep18194_B0201 putative thiol-disulphide oxidoreductase DCC; putative thiol-disulfide oxidoreductase DCC 1571396 4686861 Pnap_1482 Polaromonas naphthalenivorans CJ2 putative thiol-disulfide oxidoreductase DCC YP_981717.1 1570884 R 365044 CDS YP_981718.1 121604389 4686520 complement(1571463..1571987) 1 NC_008781.1 KEGG: cvi:CV2106 probable transcriptional regulator; putative transcriptional regulator 1571987 4686520 Pnap_1483 Polaromonas naphthalenivorans CJ2 putative transcriptional regulator YP_981718.1 1571463 R 365044 CDS YP_981719.1 121604390 4686737 1572285..1573100 1 NC_008781.1 PFAM: zinc/iron permease; KEGG: pol:Bpro_1734 zinc/iron permease; zinc/iron permease 1573100 4686737 Pnap_1484 Polaromonas naphthalenivorans CJ2 zinc/iron permease YP_981719.1 1572285 D 365044 CDS YP_981720.1 121604391 4686988 complement(1573501..1574499) 1 NC_008781.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_1736 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 1574499 4686988 Pnap_1485 Polaromonas naphthalenivorans CJ2 D-isomer specific 2-hydroxyacid dehydrogenase YP_981720.1 1573501 R 365044 CDS YP_981721.1 121604392 4687744 complement(1574502..1575449) 1 NC_008781.1 PFAM: PfkB domain protein; KEGG: pol:Bpro_1737 PfkB; ribokinase-like domain-containing protein 1575449 4687744 Pnap_1486 Polaromonas naphthalenivorans CJ2 ribokinase-like domain-containing protein YP_981721.1 1574502 R 365044 CDS YP_981722.1 121604393 4687554 complement(1575446..1576261) 1 NC_008781.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: epimerase KguE, putative; xylose isomerase domain-containing protein 1576261 4687554 Pnap_1487 Polaromonas naphthalenivorans CJ2 xylose isomerase domain-containing protein YP_981722.1 1575446 R 365044 CDS YP_981723.1 121604394 4687697 complement(1576251..1577048) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMa0083 putative ABC transporter ATP-binding protein; ABC transporter-like protein 1577048 4687697 Pnap_1488 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981723.1 1576251 R 365044 CDS YP_981724.1 121604395 4688456 complement(1577081..1577887) 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 3; KEGG: sme:SMa0082 putative ABC transporter, periplasmic solute-binding protein; extracellular solute-binding protein 1577887 4688456 Pnap_1489 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_981724.1 1577081 R 365044 CDS YP_981725.1 121604396 4688016 complement(1577946..1579148) 1 NC_008781.1 KEGG: bcn:Bcen_5721 hypothetical protein; hypothetical protein 1579148 4688016 Pnap_1490 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981725.1 1577946 R 365044 CDS YP_981726.1 121604397 4688103 complement(1579205..1579858) 1 NC_008781.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0081 putative ABC transporter permease; polar amino acid ABC transporter inner membrane subunit 1579858 4688103 Pnap_1491 Polaromonas naphthalenivorans CJ2 polar amino acid ABC transporter inner membrane subunit YP_981726.1 1579205 R 365044 CDS YP_981727.1 121604398 4688235 complement(1579858..1580529) 1 NC_008781.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0079 putative ABC transporter permease; polar amino acid ABC transporter inner membrane subunit 1580529 4688235 Pnap_1492 Polaromonas naphthalenivorans CJ2 polar amino acid ABC transporter inner membrane subunit YP_981727.1 1579858 R 365044 CDS YP_981728.1 121604399 4688459 complement(1580691..1581821) 1 NC_008781.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_1738 transcriptional regulator, LacI family; regulatory protein, LacI 1581821 4688459 Pnap_1493 Polaromonas naphthalenivorans CJ2 regulatory protein, LacI YP_981728.1 1580691 R 365044 CDS YP_981729.1 121604400 4688607 complement(1582943..1583179) 1 NC_008781.1 KEGG: pol:Bpro_1739 hypothetical protein; hypothetical protein 1583179 4688607 Pnap_1494 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981729.1 1582943 R 365044 CDS YP_981730.1 121604401 4688633 complement(1583442..1583705) 1 NC_008781.1 hypothetical protein 1583705 4688633 Pnap_1495 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981730.1 1583442 R 365044 CDS YP_981731.1 121604402 4689187 complement(1583744..1584646) 1 NC_008781.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_1742 3-mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 1584646 4689187 Pnap_1496 Polaromonas naphthalenivorans CJ2 3-mercaptopyruvate sulfurtransferase YP_981731.1 1583744 R 365044 CDS YP_981732.1 121604403 4689107 complement(1584669..1585571) 1 NC_008781.1 KEGG: pol:Bpro_1743 putative transmembrane protein; hypothetical protein 1585571 4689107 Pnap_1497 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981732.1 1584669 R 365044 CDS YP_981733.1 121604404 4689308 complement(1585678..1586796) 1 NC_008781.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_1744 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 1586796 4689308 Pnap_1498 Polaromonas naphthalenivorans CJ2 Rieske (2Fe-2S) domain-containing protein YP_981733.1 1585678 R 365044 CDS YP_981734.1 121604405 4690203 1587084..1587365 1 NC_008781.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: pol:Bpro_1745 exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 1587365 4690203 Pnap_1499 Polaromonas naphthalenivorans CJ2 exodeoxyribonuclease VII small subunit YP_981734.1 1587084 D 365044 CDS YP_981735.1 121604406 4687750 1587362..1588345 1 NC_008781.1 PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_1746 polyprenyl synthetase; polyprenyl synthetase 1588345 4687750 Pnap_1500 Polaromonas naphthalenivorans CJ2 polyprenyl synthetase YP_981735.1 1587362 D 365044 CDS YP_981736.1 121604407 4689625 1588383..1590293 1 NC_008781.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1590293 4689625 Pnap_1501 Polaromonas naphthalenivorans CJ2 1-deoxy-D-xylulose-5-phosphate synthase YP_981736.1 1588383 D 365044 CDS YP_981737.1 121604408 4689562 1590446..1591528 1 NC_008781.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_2874 twin-arginine translocation pathway signal; TRAP dicarboxylate transporter subunit DctP 1591528 4689562 Pnap_1502 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctP YP_981737.1 1590446 D 365044 CDS YP_981738.1 121604409 4689519 complement(1591595..1593397) 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_2872 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 1593397 4689519 Pnap_1503 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctM YP_981738.1 1591595 R 365044 CDS YP_981739.1 121604410 4689200 complement(1593413..1594012) 1 NC_008781.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rfr:Rfer_2871 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1594012 4689200 Pnap_1504 Polaromonas naphthalenivorans CJ2 tripartite ATP-independent periplasmic transporter DctQ YP_981739.1 1593413 R 365044 CDS YP_981740.1 121604411 4689436 complement(1594200..1595282) 1 NC_008781.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1595282 4689436 Pnap_1505 Polaromonas naphthalenivorans CJ2 selenophosphate synthetase YP_981740.1 1594200 R 365044 CDS YP_981741.1 121604412 4689379 1595444..1596745 1 NC_008781.1 PFAM: protein of unknown function DUF323; KEGG: pol:Bpro_1756 protein of unknown function DUF323; hypothetical protein 1596745 4689379 Pnap_1506 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981741.1 1595444 D 365044 CDS YP_981742.1 121604413 4688919 1597071..1597538 1 NC_008781.1 hypothetical protein 1597538 4688919 Pnap_1507 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981742.1 1597071 D 365044 CDS YP_981743.1 121604414 4688881 complement(1597490..1598617) 1 NC_008781.1 PFAM: regulatory protein, LysR; KEGG: pol:Bpro_1757 transcriptional regulator of molybdate metabolism, LysR family; molybdate metabolism transcriptional regulator 1598617 4688881 Pnap_1508 Polaromonas naphthalenivorans CJ2 molybdate metabolism transcriptional regulator YP_981743.1 1597490 R 365044 CDS YP_981744.1 121604415 4688845 1598756..1599520 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1758 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1599520 4688845 Pnap_1509 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_981744.1 1598756 D 365044 CDS YP_981745.1 121604416 4688813 1599517..1600206 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1759 ABC transporter related; ABC transporter-like protein 1600206 4688813 Pnap_1510 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981745.1 1599517 D 365044 CDS YP_981746.1 121604417 4688752 1600203..1601030 1 NC_008781.1 KEGG: pol:Bpro_1760 hypothetical protein; hypothetical protein 1601030 4688752 Pnap_1511 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981746.1 1600203 D 365044 CDS YP_981747.1 121604418 4687861 1601155..1601463 1 NC_008781.1 hypothetical protein 1601463 4687861 Pnap_1512 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981747.1 1601155 D 365044 CDS YP_981748.1 121604419 4688128 1601548..1602138 1 NC_008781.1 PFAM: nuclear export factor GLE1; KEGG: pol:Bpro_1762 nuclear export factor GLE1; nuclear export factor GLE1 1602138 4688128 Pnap_1513 Polaromonas naphthalenivorans CJ2 nuclear export factor GLE1 YP_981748.1 1601548 D 365044 CDS YP_981749.1 121604420 4688082 1602203..1602700 1 NC_008781.1 PFAM: protein of unknown function DUF461; KEGG: pol:Bpro_1764 protein of unknown function DUF461; hypothetical protein 1602700 4688082 Pnap_1514 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981749.1 1602203 D 365044 CDS YP_981750.1 121604421 4687982 1602898..1603428 1 NC_008781.1 KEGG: pol:Bpro_0042 hemerythrin HHE cation binding region; hemerythrin HHE cation-binding region 1603428 4687982 Pnap_1515 Polaromonas naphthalenivorans CJ2 hemerythrin HHE cation-binding region YP_981750.1 1602898 D 365044 CDS YP_981751.1 121604422 4687500 complement(1603481..1603867) 1 NC_008781.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1603867 4687500 Pnap_1516 Polaromonas naphthalenivorans CJ2 camphor resistance protein CrcB YP_981751.1 1603481 R 365044 CDS YP_981752.1 121604423 4687393 1603962..1607624 1 NC_008781.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pol:Bpro_1781 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase 1607624 4687393 Pnap_1517 Polaromonas naphthalenivorans CJ2 5-oxoprolinase YP_981752.1 1603962 D 365044 CDS YP_981753.1 121604424 4687364 1607645..1608493 1 NC_008781.1 KEGG: rme:Rmet_3161 hypothetical protein; hypothetical protein 1608493 4687364 Pnap_1518 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981753.1 1607645 D 365044 CDS YP_981754.1 121604425 4687039 complement(1608571..1608942) 1 NC_008781.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: psp:PSPPH_3177 potassium efflux system protein PhaG; monovalent cation/proton antiporter subunit MnhG/PhaG 1608942 4687039 Pnap_1519 Polaromonas naphthalenivorans CJ2 monovalent cation/proton antiporter subunit MnhG/PhaG YP_981754.1 1608571 R 365044 CDS YP_981755.1 121604426 4686694 complement(1608939..1609217) 1 NC_008781.1 PFAM: multiple resistance and pH regulation protein F; KEGG: eba:ebA554 protein F of Na+/H+ antiporter of putative pH adaptation potassium efflux system; multiple resistance and pH regulation protein F 1609217 4686694 Pnap_1520 Polaromonas naphthalenivorans CJ2 multiple resistance and pH regulation protein F YP_981755.1 1608939 R 365044 CDS YP_981756.1 121604427 4686677 complement(1609214..1609705) 1 NC_008781.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 1609705 4686677 Pnap_1521 Polaromonas naphthalenivorans CJ2 putative monovalent cation/H+ antiporter subunit E YP_981756.1 1609214 R 365044 CDS YP_981757.1 121604428 4686614 complement(1609702..1611423) 1 NC_008781.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 1611423 4686614 Pnap_1522 Polaromonas naphthalenivorans CJ2 putative monovalent cation/H+ antiporter subunit D YP_981757.1 1609702 R 365044 CDS YP_981758.1 121604429 4686491 complement(1611420..1611791) 1 NC_008781.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 1611791 4686491 Pnap_1523 Polaromonas naphthalenivorans CJ2 putative monovalent cation/H+ antiporter subunit C YP_981758.1 1611420 R 365044 CDS YP_981759.1 121604430 4686059 complement(1611791..1614736) 1 NC_008781.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 1614736 4686059 Pnap_1524 Polaromonas naphthalenivorans CJ2 putative monovalent cation/H+ antiporter subunit A YP_981759.1 1611791 R 365044 CDS YP_981760.1 121604431 4686754 complement(1614967..1616109) 1 NC_008781.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1616109 4686754 Pnap_1525 Polaromonas naphthalenivorans CJ2 chaperone protein DnaJ YP_981760.1 1614967 R 365044 CDS YP_981761.1 121604432 4688096 complement(1616295..1618238) 1 NC_008781.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1618238 dnaK 4688096 dnaK Polaromonas naphthalenivorans CJ2 molecular chaperone DnaK YP_981761.1 1616295 R 365044 CDS YP_981762.1 121604433 4690213 complement(1618406..1618975) 1 NC_008781.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1618975 4690213 Pnap_1527 Polaromonas naphthalenivorans CJ2 heat shock protein GrpE YP_981762.1 1618406 R 365044 CDS YP_981763.1 121604434 4688818 complement(1619207..1619530) 1 NC_008781.1 KEGG: pol:Bpro_3120 putative transcriptional regulator; putative transcriptional regulator 1619530 4688818 Pnap_1528 Polaromonas naphthalenivorans CJ2 putative transcriptional regulator YP_981763.1 1619207 R 365044 CDS YP_981764.1 121604435 4688075 complement(1619755..1620549) 1 NC_008781.1 PFAM: Extensin family protein; KEGG: psb:Psyr_1323 extensin-like, C-terminal; extensin family protein 1620549 4688075 Pnap_1529 Polaromonas naphthalenivorans CJ2 extensin family protein YP_981764.1 1619755 R 365044 CDS YP_981765.1 121604436 4687295 complement(1620557..1620934) 1 NC_008781.1 PFAM: protein of unknown function DUF1696; KEGG: oih:OB3216 hypothetical protein; hypothetical protein 1620934 4687295 Pnap_1530 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981765.1 1620557 R 365044 CDS YP_981766.1 121604437 4686566 complement(1620999..1621952) 1 NC_008781.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_0496 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 1621952 4686566 Pnap_1531 Polaromonas naphthalenivorans CJ2 cation diffusion facilitator family transporter YP_981766.1 1620999 R 365044 CDS YP_981767.1 121604438 4686773 1622360..1622782 1 NC_008781.1 KEGG: rsp:RSP_2021 mono-heme class I cytochrome c; mono-heme class I cytochrome c 1622782 4686773 Pnap_1532 Polaromonas naphthalenivorans CJ2 mono-heme class I cytochrome c YP_981767.1 1622360 D 365044 CDS YP_981768.1 121604439 4686199 1622829..1623311 1 NC_008781.1 KEGG: rfr:Rfer_0745 diheme cytochrome c; diheme cytochrome c 1623311 4686199 Pnap_1533 Polaromonas naphthalenivorans CJ2 diheme cytochrome c YP_981768.1 1622829 D 365044 CDS YP_981769.1 121604440 4687507 1623331..1624095 1 NC_008781.1 PFAM: cytochrome B561; KEGG: bte:BTH_II0067 CybP; cytochrome B561 1624095 4687507 Pnap_1534 Polaromonas naphthalenivorans CJ2 cytochrome B561 YP_981769.1 1623331 D 365044 CDS YP_981770.1 121604441 4688199 1624108..1624776 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0503 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1624776 4688199 Pnap_1535 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_981770.1 1624108 D 365044 CDS YP_981771.1 121604442 4688821 1624773..1626122 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_0504 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1626122 4688821 Pnap_1536 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_981771.1 1624773 D 365044 CDS YP_981772.1 121604443 4690026 1626287..1626994 1 NC_008781.1 PFAM: protein of unknown function DUF125, transmembrane; KEGG: eba:ebA544 hypothetical protein; hypothetical protein 1626994 4690026 Pnap_1537 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981772.1 1626287 D 365044 CDS YP_981773.1 121604444 4688491 complement(1627015..1628259) 1 NC_008781.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rfr:Rfer_1334 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 1628259 4688491 Pnap_1538 Polaromonas naphthalenivorans CJ2 2-nitropropane dioxygenase YP_981773.1 1627015 R 365044 CDS YP_981774.1 121604445 4686726 1628519..1629139 1 NC_008781.1 PFAM: NADPH-dependent FMN reductase; KEGG: pol:Bpro_2371 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1629139 4686726 Pnap_1539 Polaromonas naphthalenivorans CJ2 NADPH-dependent FMN reductase YP_981774.1 1628519 D 365044 CDS YP_981775.1 121604446 4686330 complement(1629223..1629876) 1 NC_008781.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pol:Bpro_2372 (acyl-carrier protein) phosphodiesterase; (acyl-carrier-protein) phosphodiesterase 1629876 4686330 Pnap_1540 Polaromonas naphthalenivorans CJ2 (acyl-carrier-protein) phosphodiesterase YP_981775.1 1629223 R 365044 CDS YP_981776.1 121604447 4686129 1630029..1630958 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2373 transcriptional regulator, LysR family; LysR family transcriptional regulator 1630958 4686129 Pnap_1541 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981776.1 1630029 D 365044 CDS YP_981777.1 121604448 4686590 1631270..1631848 1 NC_008781.1 PFAM: protein of unknown function DUF1234; KEGG: pol:Bpro_2375 protein of unknown function DUF1234; hypothetical protein 1631848 4686590 Pnap_1542 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981777.1 1631270 D 365044 CDS YP_981778.1 121604449 4686634 1631845..1632837 1 NC_008781.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2376 thiosulphate-binding protein; sulfate ABC transporter substrate-binding protein 1632837 4686634 Pnap_1543 Polaromonas naphthalenivorans CJ2 sulfate ABC transporter substrate-binding protein YP_981778.1 1631845 D 365044 CDS YP_981779.1 121604450 4686687 1632840..1633733 1 NC_008781.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2377 sulfate ABC transporter, permease protein CysT; sulfate ABC transporter permease 1633733 4686687 Pnap_1544 Polaromonas naphthalenivorans CJ2 sulfate ABC transporter permease YP_981779.1 1632840 D 365044 CDS YP_981780.1 121604451 4687267 1633730..1634638 1 NC_008781.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2378 sulfate ABC transporter, permease protein CysW; sulfate ABC transporter permease 1634638 4687267 Pnap_1545 Polaromonas naphthalenivorans CJ2 sulfate ABC transporter permease YP_981780.1 1633730 D 365044 CDS YP_981781.1 121604452 4687323 1634662..1635750 1 NC_008781.1 KEGG: pol:Bpro_2379 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 1635750 4687323 Pnap_1546 Polaromonas naphthalenivorans CJ2 sulfate ABC transporter ATPase YP_981781.1 1634662 D 365044 CDS YP_981782.1 121604453 4687406 1635750..1636253 1 NC_008781.1 PFAM: Disulphide bond formation protein DsbB; KEGG: pol:Bpro_2385 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 1636253 4687406 Pnap_1547 Polaromonas naphthalenivorans CJ2 disulfide bond formation protein DsbB YP_981782.1 1635750 D 365044 CDS YP_981783.1 121604454 4687462 complement(1636287..1637117) 1 NC_008781.1 PFAM: amidohydrolase 2; KEGG: bja:blr2258 putative 2-pyrone-4,6-dicarbaxylate hydrolase; amidohydrolase 2 1637117 4687462 Pnap_1548 Polaromonas naphthalenivorans CJ2 amidohydrolase 2 YP_981783.1 1636287 R 365044 CDS YP_981784.1 121604455 4687943 1637226..1638140 1 NC_008781.1 KEGG: pol:Bpro_4509 hypothetical protein; hypothetical protein 1638140 4687943 Pnap_1549 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981784.1 1637226 D 365044 CDS YP_981785.1 121604456 4687726 complement(1638184..1639185) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4508 transcriptional regulator, LysR family; LysR family transcriptional regulator 1639185 4687726 Pnap_1550 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981785.1 1638184 R 365044 CDS YP_981786.1 121604457 4688099 1639234..1640172 1 NC_008781.1 KEGG: pol:Bpro_4507 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 1640172 4688099 Pnap_1551 Polaromonas naphthalenivorans CJ2 2-dehydropantoate 2-reductase YP_981786.1 1639234 D 365044 CDS YP_981787.1 121604458 4688144 1640201..1640599 1 NC_008781.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_4506 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1640599 4688144 Pnap_1552 Polaromonas naphthalenivorans CJ2 glyoxalase/bleomycin resistance protein/dioxygenase YP_981787.1 1640201 D 365044 CDS YP_981788.1 121604459 4688753 1640638..1641123 1 NC_008781.1 PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_4505 MaoC-like dehydratase; dehydratase 1641123 4688753 Pnap_1553 Polaromonas naphthalenivorans CJ2 dehydratase YP_981788.1 1640638 D 365044 CDS YP_981789.1 121604460 4688594 1641184..1642425 1 NC_008781.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4504 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1642425 4688594 Pnap_1554 Polaromonas naphthalenivorans CJ2 L-carnitine dehydratase/bile acid-inducible protein F YP_981789.1 1641184 D 365044 CDS YP_981790.1 121604461 4688800 1642422..1643249 1 NC_008781.1 KEGG: pol:Bpro_4503 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate 5-dehydrogenase 1643249 4688800 Pnap_1555 Polaromonas naphthalenivorans CJ2 shikimate 5-dehydrogenase YP_981790.1 1642422 D 365044 CDS YP_981791.1 121604462 4688873 1643429..1643968 1 NC_008781.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_4501 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1643968 4688873 Pnap_1556 Polaromonas naphthalenivorans CJ2 tripartite ATP-independent periplasmic transporter DctQ YP_981791.1 1643429 D 365044 CDS YP_981792.1 121604463 4688917 1643984..1645261 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_4500 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 1645261 4688917 Pnap_1557 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctM YP_981792.1 1643984 D 365044 CDS YP_981793.1 121604464 4688944 1645368..1646372 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4499 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 1646372 4688944 Pnap_1558 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctP YP_981793.1 1645368 D 365044 CDS YP_981794.1 121604465 4689445 1646501..1646947 1 NC_008781.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1646947 4689445 Pnap_1559 Polaromonas naphthalenivorans CJ2 3-dehydroquinate dehydratase YP_981794.1 1646501 D 365044 CDS YP_981795.1 121604466 4689468 1646981..1648879 1 NC_008781.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_4496 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1648879 4689468 Pnap_1560 Polaromonas naphthalenivorans CJ2 4-hydroxyphenylpyruvate dioxygenase YP_981795.1 1646981 D 365044 CDS YP_981796.1 121604467 4689507 1648918..1649751 1 NC_008781.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: pol:Bpro_4495 shikimate 5-dehydrogenase; shikimate dehydrogenase 1649751 4689507 Pnap_1561 Polaromonas naphthalenivorans CJ2 shikimate dehydrogenase YP_981796.1 1648918 D 365044 CDS YP_981797.1 121604468 4689542 complement(1649823..1651019) 1 NC_008781.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1651019 4689542 Pnap_1562 Polaromonas naphthalenivorans CJ2 aromatic amino acid aminotransferase YP_981797.1 1649823 R 365044 CDS YP_981798.1 121604469 4689593 1651193..1653301 1 NC_008781.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1653301 4689593 Pnap_1563 Polaromonas naphthalenivorans CJ2 excinuclease ABC subunit B YP_981798.1 1651193 D 365044 CDS YP_981799.1 121604470 4689653 complement(1653437..1653772) 1 NC_008781.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: bxe:Bxe_B1439 (2FE-2S) ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1653772 4689653 Pnap_1564 Polaromonas naphthalenivorans CJ2 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_981799.1 1653437 R 365044 CDS YP_981800.1 121604471 4689888 complement(1653816..1655693) 1 NC_008781.1 TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; KEGG: bxe:Bxe_B1440 Fe-S protein assembly chaperone HscA; Fe-S protein assembly chaperone HscA 1655693 4689888 Pnap_1565 Polaromonas naphthalenivorans CJ2 Fe-S protein assembly chaperone HscA YP_981800.1 1653816 R 365044 CDS YP_981801.1 121604472 4689804 complement(1655705..1656028) 1 NC_008781.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: bxe:Bxe_B1441 HesB/YadR/YfhF, iron-sulphur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 1656028 4689804 Pnap_1566 Polaromonas naphthalenivorans CJ2 iron-sulfur cluster assembly protein IscA YP_981801.1 1655705 R 365044 CDS YP_981802.1 121604473 4689042 complement(1656040..1656417) 1 NC_008781.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1656417 4689042 Pnap_1567 Polaromonas naphthalenivorans CJ2 iron-sulfur cluster insertion protein ErpA YP_981802.1 1656040 R 365044 CDS YP_981803.1 121604474 4689795 complement(1656469..1656921) 1 NC_008781.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: bxe:Bxe_B1443 FeS cluster assembly scaffold IscU; scaffold protein 1656921 4689795 Pnap_1568 Polaromonas naphthalenivorans CJ2 scaffold protein YP_981803.1 1656469 R 365044 CDS YP_981804.1 121604475 4689024 complement(1656985..1658229) 1 NC_008781.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; KEGG: bxe:Bxe_B1444 cysteine desulfurase IscS; cysteine desulfurase IscS 1658229 4689024 Pnap_1569 Polaromonas naphthalenivorans CJ2 cysteine desulfurase IscS YP_981804.1 1656985 R 365044 CDS YP_981805.1 121604476 4688344 1658567..1660276 1 NC_008781.1 KEGG: bxe:Bxe_B1445 transcriptional regulator, NifA, fis family; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; transcriptional regulator NifA 1660276 4688344 Pnap_1570 Polaromonas naphthalenivorans CJ2 transcriptional regulator NifA YP_981805.1 1658567 D 365044 CDS YP_981806.1 121604477 4688273 complement(1660372..1660860) 1 NC_008781.1 PFAM: GCN5-related N-acetyltransferase; KEGG: eba:ebA5964 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1660860 4688273 Pnap_1571 Polaromonas naphthalenivorans CJ2 N-acetyltransferase GCN5 YP_981806.1 1660372 R 365044 CDS YP_981807.1 121604478 4688238 complement(1660857..1661141) 1 NC_008781.1 KEGG: xcb:XC_1052 hypothetical protein; hypothetical protein 1661141 4688238 Pnap_1572 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981807.1 1660857 R 365044 CDS YP_981808.1 121604479 4687911 1661279..1661557 1 NC_008781.1 hypothetical protein 1661557 4687911 Pnap_1573 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981808.1 1661279 D 365044 CDS YP_981809.1 121604480 4688035 1661636..1663231 1 NC_008781.1 TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM domain protein; KEGG: bxe:Bxe_B1446 nitrogenase cofactor biosynthesis protein NifB; nitrogenase cofactor biosynthesis protein NifB 1663231 4688035 Pnap_1574 Polaromonas naphthalenivorans CJ2 nitrogenase cofactor biosynthesis protein NifB YP_981809.1 1661636 D 365044 CDS YP_981810.1 121604481 4688521 1663266..1663460 1 NC_008781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rpa:RPA4629 ferredoxin 2[4Fe-4S], FdxN; 4Fe-4S ferredoxin 1663460 4688521 Pnap_1575 Polaromonas naphthalenivorans CJ2 4Fe-4S ferredoxin YP_981810.1 1663266 D 365044 CDS YP_981811.1 121604482 4688369 1663487..1663897 1 NC_008781.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bxe:Bxe_B1447 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein 1663897 4688369 Pnap_1576 Polaromonas naphthalenivorans CJ2 iron-sulfur cluster assembly accessory protein YP_981811.1 1663487 D 365044 CDS YP_981812.1 121604483 4686845 1663924..1664493 1 NC_008781.1 KEGG: bxe:Bxe_B1448 hypothetical protein; hypothetical protein 1664493 4686845 Pnap_1577 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981812.1 1663924 D 365044 CDS YP_981813.1 121604484 4687675 1664490..1665329 1 NC_008781.1 PFAM: leucine rich repeat variant; KEGG: bxe:Bxe_B1449 hypothetical protein; hypothetical protein 1665329 4687675 Pnap_1578 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981813.1 1664490 D 365044 CDS YP_981814.1 121604485 4687052 1665322..1665684 1 NC_008781.1 PFAM: NifZ family protein; KEGG: bxe:Bxe_B1450 hypothetical protein; NifZ family protein 1665684 4687052 Pnap_1579 Polaromonas naphthalenivorans CJ2 NifZ family protein YP_981814.1 1665322 D 365044 CDS YP_981815.1 121604486 4686804 1665681..1665992 1 NC_008781.1 PFAM: NifZ family protein; KEGG: bxe:Bxe_B1451 hypothetical protein; NifZ family protein 1665992 4686804 Pnap_1580 Polaromonas naphthalenivorans CJ2 NifZ family protein YP_981815.1 1665681 D 365044 CDS YP_981816.1 121604487 4686524 1665989..1666342 1 NC_008781.1 KEGG: bxe:Bxe_B1452 hypothetical protein; hypothetical protein 1666342 4686524 Pnap_1581 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981816.1 1665989 D 365044 CDS YP_981817.1 121604488 4687003 1666367..1667515 1 NC_008781.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_B1453 putative cysteine desulfurase; class V aminotransferase 1667515 4687003 Pnap_1582 Polaromonas naphthalenivorans CJ2 class V aminotransferase YP_981817.1 1666367 D 365044 CDS YP_981818.1 121604489 4686879 1667559..1667777 1 NC_008781.1 PFAM: NifT/FixU family protein; KEGG: bxe:Bxe_B1454 nitrogen fixation protein; NifT/FixU family protein 1667777 4686879 Pnap_1583 Polaromonas naphthalenivorans CJ2 NifT/FixU family protein YP_981818.1 1667559 D 365044 CDS YP_981819.1 121604490 4686506 1667789..1668052 1 NC_008781.1 KEGG: bxe:Bxe_B1455 hypothetical protein; hypothetical protein 1668052 4686506 Pnap_1584 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981819.1 1667789 D 365044 CDS YP_981820.1 121604491 4686389 1668057..1669220 1 NC_008781.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_B1456 putative DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1669220 4686389 Pnap_1585 Polaromonas naphthalenivorans CJ2 DegT/DnrJ/EryC1/StrS aminotransferase YP_981820.1 1668057 D 365044 CDS YP_981821.1 121604492 4686373 1669231..1670076 1 NC_008781.1 KEGG: bxe:Bxe_B1457 hypothetical protein; hypothetical protein 1670076 4686373 Pnap_1586 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981821.1 1669231 D 365044 CDS YP_981822.1 121604493 4686051 1670137..1670463 1 NC_008781.1 PFAM: ferredoxin; KEGG: bxe:Bxe_B1458 putative (2Fe-2S) ferredoxin; ferredoxin 1670463 4686051 Pnap_1587 Polaromonas naphthalenivorans CJ2 ferredoxin YP_981822.1 1670137 D 365044 CDS YP_981823.1 121604494 4690143 1670488..1672119 1 NC_008781.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mca:MCA2837 amine oxidase family, flavin-containing protein; amine oxidase 1672119 4690143 Pnap_1588 Polaromonas naphthalenivorans CJ2 amine oxidase YP_981823.1 1670488 D 365044 CDS YP_981824.1 121604495 4686422 1672397..1673962 1 NC_008781.1 PFAM: protein of unknown function UPF0061; KEGG: mca:MCA0585 hypothetical protein; hypothetical protein 1673962 4686422 Pnap_1589 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981824.1 1672397 D 365044 CDS YP_981825.1 121604496 4686445 complement(1674041..1674862) 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_3110 GntR-like; GntR family transcriptional regulator 1674862 4686445 Pnap_1590 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_981825.1 1674041 R 365044 CDS YP_981826.1 121604497 4686479 1675002..1675811 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_3109 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1675811 4686479 Pnap_1591 Polaromonas naphthalenivorans CJ2 NAD-dependent epimerase/dehydratase YP_981826.1 1675002 D 365044 CDS YP_981827.1 121604498 4686474 1675818..1676720 1 NC_008781.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pol:Bpro_3108 senescence marker protein-30 (SMP-30); SMP-30/gluconolaconase/LRE domain-containing protein 1676720 4686474 Pnap_1592 Polaromonas naphthalenivorans CJ2 SMP-30/gluconolaconase/LRE domain-containing protein YP_981827.1 1675818 D 365044 CDS YP_981828.1 121604499 4686449 1676757..1677728 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_3107 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 1677728 4686449 Pnap_1593 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctP YP_981828.1 1676757 D 365044 CDS YP_981829.1 121604500 4686495 1677772..1678326 1 NC_008781.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_3106 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1678326 4686495 Pnap_1594 Polaromonas naphthalenivorans CJ2 tripartite ATP-independent periplasmic transporter DctQ YP_981829.1 1677772 D 365044 CDS YP_981830.1 121604501 4686548 1678317..1679609 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_3105 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 1679609 4686548 Pnap_1595 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctM YP_981830.1 1678317 D 365044 CDS YP_981831.1 121604502 4686162 1679672..1680583 1 NC_008781.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 1680583 4686162 Pnap_1596 Polaromonas naphthalenivorans CJ2 5-dehydro-4-deoxyglucarate dehydratase YP_981831.1 1679672 D 365044 CDS YP_981832.1 121604503 4686516 1680606..1682204 1 NC_008781.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3104 galactarate dehydratase; galactarate dehydratase 1682204 4686516 Pnap_1597 Polaromonas naphthalenivorans CJ2 galactarate dehydratase YP_981832.1 1680606 D 365044 CDS YP_981833.1 121604504 4686172 1682247..1683686 1 NC_008781.1 PFAM: aldehyde dehydrogenase; KEGG: rfr:Rfer_0452 aldehyde dehydrogenase; aldehyde dehydrogenase 1683686 4686172 Pnap_1598 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_981833.1 1682247 D 365044 CDS YP_981834.1 121604505 4686586 1683763..1684545 1 NC_008781.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 1684545 4686586 Pnap_1599 Polaromonas naphthalenivorans CJ2 alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_981834.1 1683763 D 365044 CDS YP_981835.1 121604506 4686191 1684585..1685466 1 NC_008781.1 KEGG: pol:Bpro_3102 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 1685466 4686191 Pnap_1600 Polaromonas naphthalenivorans CJ2 2-hydroxy-3-oxopropionate reductase YP_981835.1 1684585 D 365044 CDS YP_981836.1 121604507 4686220 1685504..1686472 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3101 uncharacterized protein UPF0065; hypothetical protein 1686472 4686220 Pnap_1601 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981836.1 1685504 D 365044 CDS YP_981837.1 121604508 4686619 1686580..1687572 1 NC_008781.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_2479 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 1687572 4686619 Pnap_1602 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctP YP_981837.1 1686580 D 365044 CDS YP_981838.1 121604509 4686661 complement(1687642..1687824) 1 NC_008781.1 hypothetical protein 1687824 4686661 Pnap_1603 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981838.1 1687642 R 365044 CDS YP_981839.1 121604510 4686680 complement(1687984..1690194) 1 NC_008781.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: pol:Bpro_3097 sigma 70 (RpoD); RpoD family RNA polymerase sigma factor 1690194 4686680 Pnap_1604 Polaromonas naphthalenivorans CJ2 RpoD family RNA polymerase sigma factor YP_981839.1 1687984 R 365044 CDS YP_981840.1 121604511 4686663 complement(1690589..1692619) 1 NC_008781.1 KEGG: pol:Bpro_3096 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase 1692619 4686663 Pnap_1605 Polaromonas naphthalenivorans CJ2 DNA primase YP_981840.1 1690589 R 365044 CDS YP_981841.1 121604512 4687281 1692714..1693649 1 NC_008781.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_3095 ribonuclease BN, putative; putative ribonuclease BN 1693649 4687281 Pnap_1606 Polaromonas naphthalenivorans CJ2 putative ribonuclease BN YP_981841.1 1692714 D 365044 CDS YP_981842.1 121604513 4687283 complement(1693731..1695587) 1 NC_008781.1 KEGG: pol:Bpro_3094 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1695587 4687283 Pnap_1607 Polaromonas naphthalenivorans CJ2 gamma-glutamyltransferase YP_981842.1 1693731 R 365044 CDS YP_981843.1 121604514 4687320 complement(1695767..1696228) 1 NC_008781.1 hypothetical protein 1696228 4687320 Pnap_1608 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981843.1 1695767 R 365044 CDS YP_981844.1 121604515 4687158 complement(1696402..1697169) 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_2204 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1697169 4687158 Pnap_1609 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_981844.1 1696402 R 365044 CDS YP_981845.1 121604516 4687349 complement(1697339..1698397) 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_3092 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1698397 4687349 Pnap_1610 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_981845.1 1697339 R 365044 CDS YP_981846.1 121604517 4687161 1698427..1699410 1 NC_008781.1 PFAM: Patatin; KEGG: pol:Bpro_3091 patatin; patatin 1699410 4687161 Pnap_1611 Polaromonas naphthalenivorans CJ2 patatin YP_981846.1 1698427 D 365044 CDS YP_981847.1 121604518 4687200 complement(1699652..1700194) 1 NC_008781.1 TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin; phasin family protein 1700194 4687200 Pnap_1612 Polaromonas naphthalenivorans CJ2 phasin family protein YP_981847.1 1699652 R 365044 CDS YP_981848.1 121604519 4687194 1700324..1701325 1 NC_008781.1 PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3087 histone deacetylase superfamily; histone deacetylase superfamily protein 1701325 4687194 Pnap_1613 Polaromonas naphthalenivorans CJ2 histone deacetylase superfamily protein YP_981848.1 1700324 D 365044 CDS YP_981849.1 121604520 4687405 1701325..1701792 1 NC_008781.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3086 thioesterase superfamily; thioesterase superfamily protein 1701792 4687405 Pnap_1614 Polaromonas naphthalenivorans CJ2 thioesterase superfamily protein YP_981849.1 1701325 D 365044 CDS YP_981850.1 121604521 4687412 1701789..1702562 1 NC_008781.1 PFAM: nitroreductase; KEGG: pol:Bpro_3085 nitroreductase; nitroreductase 1702562 4687412 Pnap_1615 Polaromonas naphthalenivorans CJ2 nitroreductase YP_981850.1 1701789 D 365044 CDS YP_981851.1 121604522 4687414 1702567..1704435 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_3084 inner-membrane translocator; inner-membrane translocator 1704435 4687414 Pnap_1616 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_981851.1 1702567 D 365044 CDS YP_981852.1 121604523 4686560 1704435..1705193 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3083 ABC transporter related; ABC transporter-like protein 1705193 4686560 Pnap_1617 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981852.1 1704435 D 365044 CDS YP_981853.1 121604524 4687241 1705186..1705827 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3082 ABC transporter related; ABC transporter-like protein 1705827 4687241 Pnap_1618 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981853.1 1705186 D 365044 CDS YP_981854.1 121604525 4687189 1705889..1706242 1 NC_008781.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_3081 peptidylprolyl isomerase; FKBP-type peptidylprolyl isomerase 1706242 4687189 Pnap_1619 Polaromonas naphthalenivorans CJ2 FKBP-type peptidylprolyl isomerase YP_981854.1 1705889 D 365044 CDS YP_981855.1 121604526 4687506 1706340..1707539 1 NC_008781.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1707539 4687506 Pnap_1620 Polaromonas naphthalenivorans CJ2 nicotinate phosphoribosyltransferase YP_981855.1 1706340 D 365044 CDS YP_981856.1 121604527 4687979 1707544..1708977 1 NC_008781.1 KEGG: pol:Bpro_3079 putative transmembrane protein; hypothetical protein 1708977 4687979 Pnap_1621 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981856.1 1707544 D 365044 CDS YP_981857.1 121604528 4687974 1708996..1709982 1 NC_008781.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 1709982 4687974 Pnap_1622 Polaromonas naphthalenivorans CJ2 D-isomer specific 2-hydroxyacid dehydrogenase YP_981857.1 1708996 D 365044 CDS YP_981858.1 121604529 4687591 1710013..1711338 1 NC_008781.1 PFAM: protein of unknown function DUF195; KEGG: pol:Bpro_3077 protein of unknown function DUF195; hypothetical protein 1711338 4687591 Pnap_1623 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981858.1 1710013 D 365044 CDS YP_981859.1 121604530 4688028 complement(1711369..1712232) 1 NC_008781.1 PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_3075 conserved hypothetical protein 730; hypothetical protein 1712232 4688028 Pnap_1624 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981859.1 1711369 R 365044 CDS YP_981860.1 121604531 4688061 complement(1712412..1712966) 1 NC_008781.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1712966 4688061 Pnap_1625 Polaromonas naphthalenivorans CJ2 elongation factor P YP_981860.1 1712412 R 365044 CDS YP_981861.1 121604532 4688060 complement(1713098..1714225) 1 NC_008781.1 KEGG: pol:Bpro_3073 hypothetical protein; hypothetical protein 1714225 4688060 Pnap_1626 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981861.1 1713098 R 365044 CDS YP_981862.1 121604533 4687416 1714259..1716208 1 NC_008781.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1716208 uvrC 4687416 uvrC Polaromonas naphthalenivorans CJ2 excinuclease ABC subunit C YP_981862.1 1714259 D 365044 CDS YP_981863.1 121604534 4688085 1716231..1716836 1 NC_008781.1 KEGG: pol:Bpro_3070 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1716836 4688085 Pnap_1628 Polaromonas naphthalenivorans CJ2 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_981863.1 1716231 D 365044 CDS YP_981864.1 121604535 4687785 1716860..1717780 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_3069 protein of unknown function DUF6, transmembrane; hypothetical protein 1717780 4687785 Pnap_1629 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981864.1 1716860 D 365044 CDS YP_981865.1 121604536 4688163 complement(1717740..1718702) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3068 transcriptional regulator, LysR family; LysR family transcriptional regulator 1718702 4688163 Pnap_1630 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981865.1 1717740 R 365044 CDS YP_981866.1 121604537 4688173 1718828..1719706 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3067 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1719706 4688173 Pnap_1631 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold protein YP_981866.1 1718828 D 365044 CDS YP_981867.1 121604538 4688174 1719723..1720829 1 NC_008781.1 KEGG: pol:Bpro_3066 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1720829 4688174 Pnap_1632 Polaromonas naphthalenivorans CJ2 tartrate dehydrogenase YP_981867.1 1719723 D 365044 CDS YP_981868.1 121604539 4688178 1721079..1721351 1 NC_008781.1 PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_3065 histone-like DNA-binding protein; histone family protein DNA-binding protein 1721351 4688178 Pnap_1633 Polaromonas naphthalenivorans CJ2 histone family protein DNA-binding protein YP_981868.1 1721079 D 365044 CDS YP_981869.1 121604540 4687865 1721523..1723460 1 NC_008781.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_3064 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1723460 4687865 Pnap_1634 Polaromonas naphthalenivorans CJ2 PpiC-type peptidyl-prolyl cis-trans isomerase YP_981869.1 1721523 D 365044 CDS YP_981870.1 121604541 4688440 complement(1723654..1724166) 1 NC_008781.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: rfr:Rfer_2842 2',5' RNA ligase; 2'-5' RNA ligase 1724166 4688440 Pnap_1635 Polaromonas naphthalenivorans CJ2 2'-5' RNA ligase YP_981870.1 1723654 R 365044 CDS YP_981871.1 121604542 4688610 1724338..1726437 1 NC_008781.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1726437 4688610 Pnap_1636 Polaromonas naphthalenivorans CJ2 elongation factor G YP_981871.1 1724338 D 365044 CDS YP_981872.1 121604543 4688358 1726673..1727689 1 NC_008781.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_5572 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1727689 4688358 Pnap_1637 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_981872.1 1726673 D 365044 CDS YP_981873.1 121604544 4688598 complement(1728067..1730652) 1 NC_008781.1 KEGG: rxy:Rxyl_2670 hypothetical protein; hypothetical protein 1730652 4688598 Pnap_1638 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981873.1 1728067 R 365044 CDS YP_981874.1 121604545 4688837 complement(1731029..1731394) 1 NC_008781.1 hypothetical protein 1731394 4688837 Pnap_1639 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981874.1 1731029 R 365044 CDS YP_981875.1 121604546 4688876 complement(1731415..1733403) 1 NC_008781.1 KEGG: rxy:Rxyl_2670 hypothetical protein; hypothetical protein 1733403 4688876 Pnap_1640 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981875.1 1731415 R 365044 CDS YP_981876.1 121604547 4688648 complement(1733466..1733813) 1 NC_008781.1 hypothetical protein 1733813 4688648 Pnap_1641 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981876.1 1733466 R 365044 CDS YP_981877.1 121604548 4688850 complement(1733827..1735206) 1 NC_008781.1 KEGG: nmu:Nmul_A2433 hypothetical protein; hypothetical protein 1735206 4688850 Pnap_1642 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981877.1 1733827 R 365044 CDS YP_981878.1 121604549 4688914 complement(1735206..1736717) 1 NC_008781.1 PFAM: glycosyl transferase, group 1; KEGG: nmu:Nmul_A2434 glycosyl transferase, group 1; group 1 glycosyl transferase 1736717 4688914 Pnap_1643 Polaromonas naphthalenivorans CJ2 group 1 glycosyl transferase YP_981878.1 1735206 R 365044 CDS YP_981879.1 121604550 4689362 complement(1736695..1737699) 1 NC_008781.1 KEGG: pfl:PFL_2976 hypothetical protein; hypothetical protein 1737699 4689362 Pnap_1644 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981879.1 1736695 R 365044 CDS YP_981880.1 121604551 4689353 complement(1737723..1738874) 1 NC_008781.1 KEGG: pau:PA14_24510 hypothetical protein; hypothetical protein 1738874 4689353 Pnap_1645 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981880.1 1737723 R 365044 CDS YP_981881.1 121604552 4688918 complement(1739268..1741535) 1 NC_008781.1 KEGG: nmu:Nmul_A2441 hypothetical protein; hypothetical protein 1741535 4688918 Pnap_1646 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981881.1 1739268 R 365044 CDS YP_981882.1 121604553 4687754 complement(1741619..1742407) 1 NC_008781.1 KEGG: nmu:Nmul_A2432 putative signal peptide protein; putative signal peptide protein 1742407 4687754 Pnap_1647 Polaromonas naphthalenivorans CJ2 putative signal peptide protein YP_981882.1 1741619 R 365044 CDS YP_981883.1 121604554 4689400 complement(1743035..1743847) 1 NC_008781.1 PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1846 transcriptional regulator, IclR family; regulatory proteins, IclR 1743847 4689400 Pnap_1648 Polaromonas naphthalenivorans CJ2 regulatory proteins, IclR YP_981883.1 1743035 R 365044 CDS YP_981884.1 121604555 4689201 1744042..1744953 1 NC_008781.1 PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: pol:Bpro_1847 shikimate 5-dehydrogenase; shikimate dehydrogenase 1744953 4689201 Pnap_1649 Polaromonas naphthalenivorans CJ2 shikimate dehydrogenase YP_981884.1 1744042 D 365044 CDS YP_981885.1 121604556 4689407 1744973..1746154 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_1848 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1746154 4689407 Pnap_1650 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_981885.1 1744973 D 365044 CDS YP_981886.1 121604557 4689163 1746260..1747135 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1849 inner-membrane translocator; inner-membrane translocator 1747135 4689163 Pnap_1651 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_981886.1 1746260 D 365044 CDS YP_981887.1 121604558 4689252 1747132..1748142 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1850 inner-membrane translocator; inner-membrane translocator 1748142 4689252 Pnap_1652 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_981887.1 1747132 D 365044 CDS YP_981888.1 121604559 4689534 1748139..1748885 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1851 ABC transporter related; ABC transporter-like protein 1748885 4689534 Pnap_1653 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981888.1 1748139 D 365044 CDS YP_981889.1 121604560 4689232 1748888..1749652 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1852 ABC transporter related; ABC transporter-like protein 1749652 4689232 Pnap_1654 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_981889.1 1748888 D 365044 CDS YP_981890.1 121604561 4689287 1749693..1750595 1 NC_008781.1 KEGG: pol:Bpro_1853 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1750595 4689287 Pnap_1655 Polaromonas naphthalenivorans CJ2 4-hydroxyphenylpyruvate dioxygenase YP_981890.1 1749693 D 365044 CDS YP_981891.1 121604562 4689487 1750610..1751503 1 NC_008781.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_1854 xylose isomerase-like TIM barrel; xylose isomerase domain-containing protein 1751503 4689487 Pnap_1656 Polaromonas naphthalenivorans CJ2 xylose isomerase domain-containing protein YP_981891.1 1750610 D 365044 CDS YP_981892.1 121604563 4689664 1751535..1752749 1 NC_008781.1 TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: pol:Bpro_1855 3-carboxy-cis,cis-muconate cycloisomerase; 3-carboxy-cis,cis-muconate cycloisomerase 1752749 4689664 Pnap_1657 Polaromonas naphthalenivorans CJ2 3-carboxy-cis,cis-muconate cycloisomerase YP_981892.1 1751535 D 365044 CDS YP_981893.1 121604564 4689662 1752757..1753860 1 NC_008781.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pol:Bpro_4498 oxidoreductase-like; oxidoreductase domain-containing protein 1753860 4689662 Pnap_1658 Polaromonas naphthalenivorans CJ2 oxidoreductase domain-containing protein YP_981893.1 1752757 D 365044 CDS YP_981894.1 121604565 4690064 complement(1753876..1754820) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0978 transcriptional regulator, LysR family; LysR family transcriptional regulator 1754820 4690064 Pnap_1659 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_981894.1 1753876 R 365044 CDS YP_981895.1 121604566 4690086 1754898..1756430 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0977 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1756430 4690086 Pnap_1660 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_981895.1 1754898 D 365044 CDS YP_981896.1 121604567 4690129 complement(1756425..1757069) 1 NC_008781.1 PFAM: protein of unknown function DUF159; KEGG: rfr:Rfer_4344 protein of unknown function DUF159; hypothetical protein 1757069 4690129 Pnap_1661 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981896.1 1756425 R 365044 CDS YP_981897.1 121604568 4690095 1757363..1758652 1 NC_008781.1 PFAM: metallophosphoesterase; KEGG: gox:GOX1019 putative exonuclease; metallophosphoesterase 1758652 4690095 Pnap_1662 Polaromonas naphthalenivorans CJ2 metallophosphoesterase YP_981897.1 1757363 D 365044 CDS YP_981898.1 121604569 4689952 1758649..1762254 1 NC_008781.1 KEGG: tfu:Tfu_0999 hypothetical protein; hypothetical protein 1762254 4689952 Pnap_1663 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981898.1 1758649 D 365044 CDS YP_981899.1 121604570 4689850 1762377..1762658 1 NC_008781.1 KEGG: pol:Bpro_2267 hypothetical protein; hypothetical protein 1762658 4689850 Pnap_1664 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981899.1 1762377 D 365044 CDS YP_981900.1 121604571 4688916 1762866..1763180 1 NC_008781.1 KEGG: dar:Daro_3136 cytochrome c, class I; class I cytochrome c 1763180 4688916 Pnap_1665 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_981900.1 1762866 D 365044 CDS YP_981901.1 121604572 4689129 1763185..1764477 1 NC_008781.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reu:Reut_A3261 twin-arginine translocation pathway signal; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1764477 4689129 Pnap_1666 Polaromonas naphthalenivorans CJ2 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_981901.1 1763185 D 365044 CDS YP_981902.1 121604573 4689471 1765338..1765844 1 NC_008781.1 KEGG: dar:Daro_3132 hypothetical protein; hypothetical protein 1765844 4689471 Pnap_1668 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981902.1 1765338 D 365044 CDS YP_981903.1 121604574 4689753 1765884..1766195 1 NC_008781.1 KEGG: pol:Bpro_2628 hypothetical protein; hypothetical protein 1766195 4689753 Pnap_1669 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981903.1 1765884 D 365044 CDS YP_981904.1 121604575 4689712 1766257..1768074 1 NC_008781.1 KEGG: pol:Bpro_2268 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 1768074 4689712 Pnap_1670 Polaromonas naphthalenivorans CJ2 DNA polymerase III subunits gamma and tau YP_981904.1 1766257 D 365044 CDS YP_981905.1 121604576 4689737 1768152..1768484 1 NC_008781.1 PFAM: conserved hypothetical protein 103; KEGG: pol:Bpro_2269 conserved hypothetical protein 103; hypothetical protein 1768484 4689737 Pnap_1671 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981905.1 1768152 D 365044 CDS YP_981906.1 121604577 4689644 1768513..1769139 1 NC_008781.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1769139 recR 4689644 recR Polaromonas naphthalenivorans CJ2 recombination protein RecR YP_981906.1 1768513 D 365044 CDS YP_981907.1 121604578 4689303 complement(1769167..1771212) 1 NC_008781.1 KEGG: ppr:PBPRA2182 hypothetical protein; hypothetical protein 1771212 4689303 Pnap_1673 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981907.1 1769167 R 365044 CDS YP_981908.1 121604579 4689586 1771358..1771690 1 NC_008781.1 KEGG: pol:Bpro_2271 membrane protein-like; hypothetical protein 1771690 4689586 Pnap_1674 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981908.1 1771358 D 365044 CDS YP_981909.1 121604580 4689587 1771696..1772811 1 NC_008781.1 KEGG: pol:Bpro_2272 putative signal peptide protein; putative signal peptide protein 1772811 4689587 Pnap_1675 Polaromonas naphthalenivorans CJ2 putative signal peptide protein YP_981909.1 1771696 D 365044 CDS YP_981910.1 121604581 4689523 1772979..1773131 1 NC_008781.1 KEGG: pol:Bpro_2277 hypothetical protein; hypothetical protein 1773131 4689523 Pnap_1676 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981910.1 1772979 D 365044 CDS YP_981911.1 121604582 4689570 complement(1773175..1774749) 1 NC_008781.1 PFAM: Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: pol:Bpro_2278 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 1774749 4689570 Pnap_1677 Polaromonas naphthalenivorans CJ2 lytic transglycosylase catalytic subunit YP_981911.1 1773175 R 365044 CDS YP_981912.1 121604583 4689452 complement(1774746..1775516) 1 NC_008781.1 PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_1462 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 1775516 4689452 Pnap_1678 Polaromonas naphthalenivorans CJ2 hydroxyacylglutathione hydrolase YP_981912.1 1774746 R 365044 CDS YP_981913.1 121604584 4689467 1775529..1776350 1 NC_008781.1 PFAM: Methyltransferase type 11; KEGG: pol:Bpro_2280 hypothetical protein; type 11 methyltransferase 1776350 4689467 Pnap_1679 Polaromonas naphthalenivorans CJ2 type 11 methyltransferase YP_981913.1 1775529 D 365044 CDS YP_981914.1 121604585 4689372 1776416..1776901 1 NC_008781.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1776901 rnhA 4689372 rnhA Polaromonas naphthalenivorans CJ2 ribonuclease H YP_981914.1 1776416 D 365044 CDS YP_981915.1 121604586 4689412 1777086..1778390 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2282 secretion protein HlyD; RND family efflux transporter MFP subunit 1778390 4689412 Pnap_1681 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_981915.1 1777086 D 365044 CDS YP_981916.1 121604587 4689844 1778437..1781631 1 NC_008781.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2283 acriflavin resistance protein; acriflavin resistance protein 1781631 4689844 Pnap_1682 Polaromonas naphthalenivorans CJ2 acriflavin resistance protein YP_981916.1 1778437 D 365044 CDS YP_981917.1 121604588 4689010 complement(1781653..1783332) 1 NC_008781.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sde:Sde_0299 hypothetical protein; peptidase S8/S53 subtilisin kexin sedolisin 1783332 4689010 Pnap_1683 Polaromonas naphthalenivorans CJ2 peptidase S8/S53 subtilisin kexin sedolisin YP_981917.1 1781653 R 365044 CDS YP_981918.1 121604589 4689654 complement(1783332..1784084) 1 NC_008781.1 KEGG: mlo:mll5117 hypothetical protein; hypothetical protein 1784084 4689654 Pnap_1684 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981918.1 1783332 R 365044 CDS YP_981919.1 121604590 4688692 complement(1784081..1784698) 1 NC_008781.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nha:Nham_2659 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 1784698 4688692 Pnap_1685 Polaromonas naphthalenivorans CJ2 ECF subfamily RNA polymerase sigma-24 factor YP_981919.1 1784081 R 365044 CDS YP_981920.1 121604591 4688836 1785118..1785684 1 NC_008781.1 KEGG: cya:CYA_0242 hypothetical protein; hypothetical protein 1785684 4688836 Pnap_1686 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981920.1 1785118 D 365044 CDS YP_981921.1 121604592 4689119 complement(1785767..1787113) 1 NC_008781.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: pol:Bpro_2286 MoeA-like, domain I and II; molybdenum cofactor synthesis domain-containing protein 1787113 4689119 Pnap_1687 Polaromonas naphthalenivorans CJ2 molybdenum cofactor synthesis domain-containing protein YP_981921.1 1785767 R 365044 CDS YP_981922.1 121604593 4688403 complement(1787110..1787754) 1 NC_008781.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 1787754 mobA 4688403 mobA Polaromonas naphthalenivorans CJ2 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_981922.1 1787110 R 365044 CDS YP_981923.1 121604594 4688490 complement(1787916..1789046) 1 NC_008781.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1789046 moaA 4688490 moaA Polaromonas naphthalenivorans CJ2 molybdenum cofactor biosynthesis protein A YP_981923.1 1787916 R 365044 CDS YP_981924.1 121604595 4688359 complement(1789189..1790337) 1 NC_008781.1 KEGG: pol:Bpro_1617 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1790337 4688359 Pnap_1690 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_981924.1 1789189 R 365044 CDS YP_981925.1 121604596 4688437 complement(1790552..1791988) 1 NC_008781.1 PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2290 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase 1791988 4688437 Pnap_1691 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_981925.1 1790552 R 365044 CDS YP_981926.1 121604597 4688972 complement(1792034..1792492) 1 NC_008781.1 KEGG: pol:Bpro_3272 hypothetical protein; hypothetical protein 1792492 4688972 Pnap_1692 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981926.1 1792034 R 365044 CDS YP_981927.1 121604598 4688321 complement(1792507..1792878) 1 NC_008781.1 PFAM: response regulator receiver; KEGG: pol:Bpro_3271 response regulator receiver domain protein (CheY-like); response regulator receiver protein 1792878 4688321 Pnap_1693 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_981927.1 1792507 R 365044 CDS YP_981928.1 121604599 4688457 complement(1792923..1795070) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; KEGG: pol:Bpro_3270 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 1795070 4688457 Pnap_1694 Polaromonas naphthalenivorans CJ2 CheA signal transduction histidine kinase YP_981928.1 1792923 R 365044 CDS YP_981929.1 121604600 4688416 complement(1795471..1795956) 1 NC_008781.1 PFAM: thioesterase superfamily protein; KEGG: eba:ebA6092 conserved hypothetical protein, putative thioesterase; thioesterase superfamily protein 1795956 4688416 Pnap_1695 Polaromonas naphthalenivorans CJ2 thioesterase superfamily protein YP_981929.1 1795471 R 365044 CDS YP_981930.1 121604601 4687928 complement(1796137..1797120) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0434 uncharacterized protein UPF0065; hypothetical protein 1797120 4687928 Pnap_1696 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981930.1 1796137 R 365044 CDS YP_981931.1 121604602 4687878 complement(1797177..1797893) 1 NC_008781.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_2296 dimethylmenaquinone methyltransferase; hypothetical protein 1797893 4687878 Pnap_1697 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981931.1 1797177 R 365044 CDS YP_981932.1 121604603 4687874 complement(1797909..1799648) 1 NC_008781.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 1799648 4687874 Pnap_1698 Polaromonas naphthalenivorans CJ2 dihydroxy-acid dehydratase YP_981932.1 1797909 R 365044 CDS YP_981933.1 121604604 4688166 1799994..1801439 1 NC_008781.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5481 HNH endonuclease; HNH endonuclease 1801439 4688166 Pnap_1699 Polaromonas naphthalenivorans CJ2 HNH endonuclease YP_981933.1 1799994 D 365044 CDS YP_981934.1 121604605 4688097 1801436..1802152 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bja:blr0382 transcriptional regulatory protein; GntR family transcriptional regulator 1802152 4688097 Pnap_1700 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_981934.1 1801436 D 365044 CDS YP_981935.1 121604606 4687787 complement(1802294..1804534) 1 NC_008781.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1804534 hppA 4687787 hppA Polaromonas naphthalenivorans CJ2 membrane-bound proton-translocating pyrophosphatase YP_981935.1 1802294 R 365044 CDS YP_981936.1 121604607 4687722 1804796..1805338 1 NC_008781.1 PFAM: Inorganic pyrophosphatase; KEGG: pol:Bpro_2300 inorganic diphosphatase; inorganic diphosphatase 1805338 4687722 Pnap_1702 Polaromonas naphthalenivorans CJ2 inorganic diphosphatase YP_981936.1 1804796 D 365044 CDS YP_981937.1 121604608 4687952 1805475..1809701 1 NC_008781.1 KEGG: reu:Reut_B4915 protein-glutamate methylesterase, two-component system, chemotaxis family, response regulator CheB / chemotaxis protein methyltransferase CheR; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase with CheB and CheR activity 1809701 4687952 Pnap_1703 Polaromonas naphthalenivorans CJ2 signal transduction histidine kinase with CheB and CheR activity YP_981937.1 1805475 D 365044 CDS YP_981938.1 121604609 4687575 1809797..1810504 1 NC_008781.1 hypothetical protein 1810504 4687575 Pnap_1704 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981938.1 1809797 D 365044 CDS YP_981939.1 121604610 4687680 complement(1810528..1811382) 1 NC_008781.1 KEGG: pol:Bpro_2302 hypothetical protein; hypothetical protein 1811382 4687680 Pnap_1705 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981939.1 1810528 R 365044 CDS YP_981940.1 121604611 4688366 complement(1811514..1812350) 1 NC_008781.1 KEGG: pol:Bpro_2305 hypothetical protein; hypothetical protein 1812350 4688366 Pnap_1706 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981940.1 1811514 R 365044 CDS YP_981941.1 121604612 4687530 complement(1812389..1812718) 1 NC_008781.1 KEGG: pol:Bpro_2307 hypothetical protein; hypothetical protein 1812718 4687530 Pnap_1707 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981941.1 1812389 R 365044 CDS YP_981942.1 121604613 4687538 complement(1812715..1813971) 1 NC_008781.1 PFAM: protein of unknown function DUF482; KEGG: pol:Bpro_2308 protein of unknown function DUF482; hypothetical protein 1813971 4687538 Pnap_1708 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981942.1 1812715 R 365044 CDS YP_981943.1 121604614 4687499 1814007..1815704 1 NC_008781.1 KEGG: pol:Bpro_2309 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; NAD+ synthetase 1815704 4687499 Pnap_1709 Polaromonas naphthalenivorans CJ2 NAD+ synthetase YP_981943.1 1814007 D 365044 CDS YP_981944.1 121604615 4686986 1815733..1816134 1 NC_008781.1 PFAM: nitrogen regulatory protein P-II; KEGG: pol:Bpro_2310 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 1816134 4686986 Pnap_1710 Polaromonas naphthalenivorans CJ2 nitrogen regulatory protein P-II YP_981944.1 1815733 D 365044 CDS YP_981945.1 121604616 4686969 complement(1816141..1816752) 1 NC_008781.1 PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_2311 conserved hypothetical protein 730; hypothetical protein 1816752 4686969 Pnap_1711 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981945.1 1816141 R 365044 CDS YP_981946.1 121604617 4687465 complement(1816749..1817162) 1 NC_008781.1 PFAM: diacylglycerol kinase; KEGG: pol:Bpro_2312 diacylglycerol kinase; diacylglycerol kinase 1817162 4687465 Pnap_1712 Polaromonas naphthalenivorans CJ2 diacylglycerol kinase YP_981946.1 1816749 R 365044 CDS YP_981947.1 121604618 4687061 complement(1817191..1817691) 1 NC_008781.1 PFAM: RDD domain containing protein; KEGG: pol:Bpro_2313 hypothetical protein; RDD domain-containing protein 1817691 4687061 Pnap_1713 Polaromonas naphthalenivorans CJ2 RDD domain-containing protein YP_981947.1 1817191 R 365044 CDS YP_981948.1 121604619 4687009 complement(1817816..1818550) 1 NC_008781.1 KEGG: pol:Bpro_2314 putative transmembrane protein; hypothetical protein 1818550 4687009 Pnap_1714 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981948.1 1817816 R 365044 CDS YP_981949.1 121604620 4687289 complement(1818547..1818993) 1 NC_008781.1 KEGG: pol:Bpro_2315 putative transmembrane protein; hypothetical protein 1818993 4687289 Pnap_1715 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981949.1 1818547 R 365044 CDS YP_981950.1 121604621 4686954 complement(1818990..1819556) 1 NC_008781.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 1819556 4686954 Pnap_1716 Polaromonas naphthalenivorans CJ2 RNA polymerase factor sigma-70 YP_981950.1 1818990 R 365044 CDS YP_981951.1 121604622 4686899 1819887..1821665 1 NC_008781.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 3 catalytic subunit 1821665 4686899 Pnap_1717 Polaromonas naphthalenivorans CJ2 acetolactate synthase 3 catalytic subunit YP_981951.1 1819887 D 365044 CDS YP_981952.1 121604623 4686907 1821774..1822265 1 NC_008781.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1822265 ilvH 4686907 ilvH Polaromonas naphthalenivorans CJ2 acetolactate synthase 3 regulatory subunit YP_981952.1 1821774 D 365044 CDS YP_981953.1 121604624 4686931 1822336..1823352 1 NC_008781.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1823352 4686931 Pnap_1719 Polaromonas naphthalenivorans CJ2 ketol-acid reductoisomerase YP_981953.1 1822336 D 365044 CDS YP_981954.1 121604625 4687248 1823586..1824398 1 NC_008781.1 KEGG: pol:Bpro_2320 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 1824398 4687248 Pnap_1720 Polaromonas naphthalenivorans CJ2 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_981954.1 1823586 D 365044 CDS YP_981955.1 121604626 4686752 1824667..1826205 1 NC_008781.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1826205 4686752 Pnap_1721 Polaromonas naphthalenivorans CJ2 2-isopropylmalate synthase YP_981955.1 1824667 D 365044 CDS YP_981956.1 121604627 4686705 1826401..1827492 1 NC_008781.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: pol:Bpro_2323 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 1827492 4686705 Pnap_1722 Polaromonas naphthalenivorans CJ2 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 YP_981956.1 1826401 D 365044 CDS YP_981957.1 121604628 4686728 complement(1827624..1828403) 1 NC_008781.1 PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2324 transcriptional regulator, IclR family; regulatory proteins, IclR 1828403 4686728 Pnap_1723 Polaromonas naphthalenivorans CJ2 regulatory proteins, IclR YP_981957.1 1827624 R 365044 CDS YP_981958.1 121604629 4686810 complement(1828494..1829255) 1 NC_008781.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 1829255 4686810 Pnap_1724 Polaromonas naphthalenivorans CJ2 arginyl-tRNA-protein transferase YP_981958.1 1828494 R 365044 CDS YP_981959.1 121604630 4686436 complement(1829252..1830034) 1 NC_008781.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1830034 aat 4686436 aat Polaromonas naphthalenivorans CJ2 leucyl/phenylalanyl-tRNA--protein transferase YP_981959.1 1829252 R 365044 CDS YP_981960.1 121604631 4686609 complement(1830084..1830713) 1 NC_008781.1 TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_1963 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 1830713 4686609 Pnap_1726 Polaromonas naphthalenivorans CJ2 uracil phosphoribosyltransferase YP_981960.1 1830084 R 365044 CDS YP_981961.1 121604632 4686640 complement(1830752..1832269) 1 NC_008781.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; SMART: AAA ATPase; KEGG: pol:Bpro_1966 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein 1832269 4686640 Pnap_1727 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981961.1 1830752 R 365044 CDS YP_981962.1 121604633 4686940 1832364..1833089 1 NC_008781.1 PFAM: protein of unknown function DUF28; KEGG: pol:Bpro_1967 protein of unknown function DUF28; hypothetical protein 1833089 4686940 Pnap_1728 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981962.1 1832364 D 365044 CDS YP_981963.1 121604634 4686378 1833128..1834420 1 NC_008781.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1834420 4686378 Pnap_1729 Polaromonas naphthalenivorans CJ2 phosphoribosylamine--glycine ligase YP_981963.1 1833128 D 365044 CDS YP_981964.1 121604635 4687031 1834430..1835353 1 NC_008781.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1835353 4687031 Pnap_1730 Polaromonas naphthalenivorans CJ2 coproporphyrinogen III oxidase YP_981964.1 1834430 D 365044 CDS YP_981965.1 121604636 4689230 1835732..1836601 1 NC_008781.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pol:Bpro_1972 iojap-related protein; iojap family protein 1836601 4689230 Pnap_1732 Polaromonas naphthalenivorans CJ2 iojap family protein YP_981965.1 1835732 D 365044 CDS YP_981966.1 121604637 4687038 1836598..1837065 1 NC_008781.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1837065 4687038 Pnap_1733 Polaromonas naphthalenivorans CJ2 rRNA large subunit methyltransferase YP_981966.1 1836598 D 365044 CDS YP_981967.1 121604638 4689552 1837087..1837689 1 NC_008781.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1837689 4689552 Pnap_1734 Polaromonas naphthalenivorans CJ2 Maf-like protein YP_981967.1 1837087 D 365044 CDS YP_981968.1 121604639 4687518 1837708..1839207 1 NC_008781.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pol:Bpro_1975 ribonuclease, Rne/Rng family; ribonuclease 1839207 4687518 Pnap_1735 Polaromonas naphthalenivorans CJ2 ribonuclease YP_981968.1 1837708 D 365044 CDS YP_981969.1 121604640 4689693 1839227..1839976 1 NC_008781.1 PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1976 polysaccharide deacetylase; polysaccharide deacetylase 1839976 4689693 Pnap_1736 Polaromonas naphthalenivorans CJ2 polysaccharide deacetylase YP_981969.1 1839227 D 365044 CDS YP_981970.1 121604641 4686675 1839973..1841184 1 NC_008781.1 PFAM: glycosyl transferase, group 1; KEGG: pol:Bpro_1977 glycosyl transferase, group 1; group 1 glycosyl transferase 1841184 4686675 Pnap_1737 Polaromonas naphthalenivorans CJ2 group 1 glycosyl transferase YP_981970.1 1839973 D 365044 CDS YP_981971.1 121604642 4687901 1841281..1841481 1 NC_008781.1 KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 1841481 4687901 Pnap_1738 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981971.1 1841281 D 365044 CDS YP_981972.1 121604643 4688523 complement(1841486..1842523) 1 NC_008781.1 KEGG: xom:XOO_3993 ISXo7 transposase; ISXo7 transposase 1842523 4688523 Pnap_1739 Polaromonas naphthalenivorans CJ2 ISXo7 transposase YP_981972.1 1841486 R 365044 CDS YP_981973.1 121604644 4689065 1842594..1843079 1 NC_008781.1 KEGG: ppr:PBPRB1712 hypothetical transposase; putative transposase 1843079 4689065 Pnap_1740 Polaromonas naphthalenivorans CJ2 putative transposase YP_981973.1 1842594 D 365044 CDS YP_981974.1 121604645 4690055 1845660..1846151 1 NC_008781.1 KEGG: eba:p2A365 transposase, fragment; transposase 1846151 4690055 Pnap_1743 Polaromonas naphthalenivorans CJ2 transposase YP_981974.1 1845660 D 365044 CDS YP_981975.1 121604646 4689282 complement(1846260..1847615) 1 NC_008781.1 KEGG: bja:blr1916 putative transposase; putative transposase 1847615 4689282 Pnap_1744 Polaromonas naphthalenivorans CJ2 putative transposase YP_981975.1 1846260 R 365044 CDS YP_981976.1 121604647 4689391 1847696..1847941 1 NC_008781.1 KEGG: mac:MA0437 transposase; transposase 1847941 4689391 Pnap_1745 Polaromonas naphthalenivorans CJ2 transposase YP_981976.1 1847696 D 365044 CDS YP_981977.1 121604648 4689555 1847997..1848971 1 NC_008781.1 PFAM: Insertion element protein; KEGG: neu:NE1698 hypothetical protein; insertion element protein 1848971 4689555 Pnap_1746 Polaromonas naphthalenivorans CJ2 insertion element protein YP_981977.1 1847997 D 365044 CDS YP_981978.1 121604649 4688853 complement(1855409..1856449) 1 NC_008781.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bxe:Bxe_C0485 putative transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1856449 4688853 Pnap_1747 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_981978.1 1855409 R 365044 CDS YP_981979.1 121604650 4688495 complement(1856821..1857888) 1 NC_008781.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_1212 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1857888 4688495 Pnap_1748 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_981979.1 1856821 R 365044 CDS YP_981980.1 121604651 4689171 complement(1858093..1859373) 1 NC_008781.1 PFAM: transposase, IS4 family protein; KEGG: bxe:Bxe_C0019 putative transposase; transposase, IS4 family protein 1859373 4689171 Pnap_1749 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_981980.1 1858093 R 365044 CDS YP_981981.1 121604652 4689775 1859498..1860886 1 NC_008781.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region; integrase catalytic subunit 1860886 4689775 Pnap_1750 Polaromonas naphthalenivorans CJ2 integrase catalytic subunit YP_981981.1 1859498 D 365044 CDS YP_981982.1 121604653 4687855 1861100..1862182 1 NC_008781.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase; transposase IS116/IS110/IS902 family protein 1862182 4687855 Pnap_1751 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_981982.1 1861100 D 365044 CDS YP_981983.1 121604654 4687228 complement(1862292..1863629) 1 NC_008781.1 KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 1863629 4687228 Pnap_1752 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_981983.1 1862292 R 365044 CDS YP_981984.1 121604655 4690038 complement(1863929..1864276) 1 NC_008781.1 KEGG: ccr:CC2592 ISCc1, transposase OrfB; ISCc1, transposase OrfB 1864276 4690038 Pnap_1753 Polaromonas naphthalenivorans CJ2 ISCc1, transposase OrfB YP_981984.1 1863929 R 365044 CDS YP_981985.1 121604656 4686352 complement(1864249..1864728) 1 NC_008781.1 KEGG: lpl:lp_3570 transposase (putative); transposase 1864728 4686352 Pnap_1754 Polaromonas naphthalenivorans CJ2 transposase YP_981985.1 1864249 R 365044 CDS YP_981986.1 121604657 4687244 complement(1864794..1865381) 1 NC_008781.1 PFAM: Peptidoglycan-binding LysM; KEGG: rme:Rmet_0917 peptidoglycan-binding LysM; peptidoglycan-binding LysM 1865381 4687244 Pnap_1755 Polaromonas naphthalenivorans CJ2 peptidoglycan-binding LysM YP_981986.1 1864794 R 365044 CDS YP_981987.1 121604658 4688636 complement(1865432..1866691) 1 NC_008781.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2697 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 1866691 4688636 Pnap_1756 Polaromonas naphthalenivorans CJ2 D-amino-acid dehydrogenase YP_981987.1 1865432 R 365044 CDS YP_981988.1 121604659 4689548 complement(1866807..1868159) 1 NC_008781.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1868159 4689548 Pnap_1757 Polaromonas naphthalenivorans CJ2 amidase YP_981988.1 1866807 R 365044 CDS YP_981989.1 121604660 4690005 1868306..1869058 1 NC_008781.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1869058 rpsB 4690005 rpsB Polaromonas naphthalenivorans CJ2 30S ribosomal protein S2 YP_981989.1 1868306 D 365044 CDS YP_981990.1 121604661 4689441 1869188..1870108 1 NC_008781.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1870108 tsf 4689441 tsf Polaromonas naphthalenivorans CJ2 elongation factor Ts YP_981990.1 1869188 D 365044 CDS YP_981991.1 121604662 4687629 1870170..1870880 1 NC_008781.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1870880 pyrH 4687629 pyrH Polaromonas naphthalenivorans CJ2 uridylate kinase YP_981991.1 1870170 D 365044 CDS YP_981992.1 121604663 4688066 1870953..1871513 1 NC_008781.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1871513 frr 4688066 frr Polaromonas naphthalenivorans CJ2 ribosome recycling factor YP_981992.1 1870953 D 365044 CDS YP_981993.1 121604664 4686435 1871542..1872264 1 NC_008781.1 KEGG: pol:Bpro_2691 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1872264 4686435 Pnap_1762 Polaromonas naphthalenivorans CJ2 undecaprenyl diphosphate synthase YP_981993.1 1871542 D 365044 CDS YP_981994.1 121604665 4686077 1872282..1873112 1 NC_008781.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pol:Bpro_2690 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1873112 4686077 Pnap_1763 Polaromonas naphthalenivorans CJ2 phosphatidate cytidylyltransferase YP_981994.1 1872282 D 365044 CDS YP_981995.1 121604666 4686134 1873138..1874325 1 NC_008781.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1874325 4686134 Pnap_1764 Polaromonas naphthalenivorans CJ2 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_981995.1 1873138 D 365044 CDS YP_981996.1 121604667 4686221 1874327..1875703 1 NC_008781.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: pol:Bpro_2688 peptidase M50, putative membrane-associated zinc metallopeptidase; putative membrane-associated zinc metalloprotease 1875703 4686221 Pnap_1765 Polaromonas naphthalenivorans CJ2 putative membrane-associated zinc metalloprotease YP_981996.1 1874327 D 365044 CDS YP_981997.1 121604668 4687264 1875718..1878018 1 NC_008781.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pol:Bpro_2687 surface antigen (D15); surface antigen (D15) 1878018 4687264 Pnap_1766 Polaromonas naphthalenivorans CJ2 surface antigen (D15) YP_981997.1 1875718 D 365044 CDS YP_981998.1 121604669 4688007 1878018..1878524 1 NC_008781.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: pol:Bpro_2686 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 1878524 4688007 Pnap_1767 Polaromonas naphthalenivorans CJ2 outer membrane chaperone Skp YP_981998.1 1878018 D 365044 CDS YP_981999.1 121604670 4687777 1878572..1879639 1 NC_008781.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1879639 lpxD 4687777 lpxD Polaromonas naphthalenivorans CJ2 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_981999.1 1878572 D 365044 CDS YP_982000.1 121604671 4687851 1879636..1880076 1 NC_008781.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1880076 fabZ 4687851 fabZ Polaromonas naphthalenivorans CJ2 (3R)-hydroxymyristoyl-ACP dehydratase YP_982000.1 1879636 D 365044 CDS YP_982001.1 121604672 4688443 1880088..1880900 1 NC_008781.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1880900 4688443 Pnap_1770 Polaromonas naphthalenivorans CJ2 UDP-N-acetylglucosamine acyltransferase YP_982001.1 1880088 D 365044 CDS YP_982002.1 121604673 4689427 1880908..1882104 1 NC_008781.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1882104 lpxB 4689427 lpxB Polaromonas naphthalenivorans CJ2 lipid-A-disaccharide synthase YP_982002.1 1880908 D 365044 CDS YP_982003.1 121604674 4689222 1882076..1882702 1 NC_008781.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1882702 rnhB 4689222 rnhB Polaromonas naphthalenivorans CJ2 ribonuclease HII YP_982003.1 1882076 D 365044 CDS YP_982004.1 121604675 4689082 1882699..1883478 1 NC_008781.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_2680 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1883478 4689082 Pnap_1773 Polaromonas naphthalenivorans CJ2 tRNA/rRNA methyltransferase SpoU YP_982004.1 1882699 D 365044 CDS YP_982005.1 121604676 4689857 1883634..1884815 1 NC_008781.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1884815 4689857 Pnap_1774 Polaromonas naphthalenivorans CJ2 carbamoyl phosphate synthase small subunit YP_982005.1 1883634 D 365044 CDS YP_982006.1 121604677 4689047 1884808..1888050 1 NC_008781.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: pol:Bpro_2678 carbamoyl-phosphate synthase, large subunit; carbamoyl-phosphate synthase large subunit 1888050 4689047 Pnap_1775 Polaromonas naphthalenivorans CJ2 carbamoyl-phosphate synthase large subunit YP_982006.1 1884808 D 365044 CDS YP_982007.1 121604678 4687899 1888171..1888647 1 NC_008781.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_2677 GreA/GreB family elongation factor; transcription elongation factor GreA 1888647 4687899 Pnap_1776 Polaromonas naphthalenivorans CJ2 transcription elongation factor GreA YP_982007.1 1888171 D 365044 CDS YP_982008.1 121604679 4690200 1888647..1889087 1 NC_008781.1 KEGG: pol:Bpro_2676 putative transmembrane protein; hypothetical protein 1889087 4690200 Pnap_1777 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982008.1 1888647 D 365044 CDS YP_982009.1 121604680 4686090 complement(1889136..1889981) 1 NC_008781.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1889981 4686090 Pnap_1778 Polaromonas naphthalenivorans CJ2 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_982009.1 1889136 R 365044 CDS YP_982010.1 121604681 4687036 complement(1890068..1890694) 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_2674 two component transcriptional regulator, LuxR family; response regulator receiver protein 1890694 4687036 Pnap_1779 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_982010.1 1890068 R 365044 CDS YP_982011.1 121604682 4686813 complement(1890741..1893311) 1 NC_008781.1 KEGG: pol:Bpro_2673 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 1893311 4686813 Pnap_1780 Polaromonas naphthalenivorans CJ2 multi-sensor signal transduction histidine kinase YP_982011.1 1890741 R 365044 CDS YP_982012.1 121604683 4687011 1893611..1896340 1 NC_008781.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1896340 aceE 4687011 aceE Polaromonas naphthalenivorans CJ2 pyruvate dehydrogenase subunit E1 YP_982012.1 1893611 D 365044 CDS YP_982013.1 121604684 4687542 1896383..1898089 1 NC_008781.1 KEGG: pol:Bpro_2671 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 1898089 4687542 Pnap_1782 Polaromonas naphthalenivorans CJ2 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_982013.1 1896383 D 365044 CDS YP_982014.1 121604685 4688446 1898086..1898676 1 NC_008781.1 PFAM: 20S proteasome, A and B subunits; KEGG: pol:Bpro_2670 20S proteasome, A and B subunits; 20S proteasome subunits A/B 1898676 4688446 Pnap_1783 Polaromonas naphthalenivorans CJ2 20S proteasome subunits A/B YP_982014.1 1898086 D 365044 CDS YP_982015.1 121604686 4690151 1898673..1900538 1 NC_008781.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pol:Bpro_2669 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 1900538 4690151 Pnap_1784 Polaromonas naphthalenivorans CJ2 dihydrolipoamide dehydrogenase YP_982015.1 1898673 D 365044 CDS YP_982016.1 121604687 4687788 complement(1900715..1901245) 1 NC_008781.1 KEGG: bxe:Bxe_B1463 hypothetical protein; hypothetical protein 1901245 4687788 Pnap_1785 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982016.1 1900715 R 365044 CDS YP_982017.1 121604688 4686180 1901287..1901733 1 NC_008781.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rfr:Rfer_2214 dihydrolipoamide dehydrogenase; pyridine nucleotide-disulfide oxidoreductase dimerisation region 1901733 4686180 Pnap_1786 Polaromonas naphthalenivorans CJ2 pyridine nucleotide-disulfide oxidoreductase dimerisation region YP_982017.1 1901287 D 365044 CDS YP_982018.1 121604689 4686156 complement(1901835..1902443) 1 NC_008781.1 PFAM: NLP/P60 protein; KEGG: pol:Bpro_2667 peptidace C40 NLP/P60; NLP/P60 protein 1902443 4686156 Pnap_1787 Polaromonas naphthalenivorans CJ2 NLP/P60 protein YP_982018.1 1901835 R 365044 CDS YP_982019.1 121604690 4689279 1902654..1903829 1 NC_008781.1 PFAM: NHL repeat containing protein; glucose sorbosone dehydrogenase; KEGG: pol:Bpro_2666 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 1903829 4689279 Pnap_1788 Polaromonas naphthalenivorans CJ2 glucose sorbosone dehydrogenase YP_982019.1 1902654 D 365044 CDS YP_982020.1 121604691 4687363 1903901..1904704 1 NC_008781.1 KEGG: pol:Bpro_2659 ABC-type transport system ipermease component; ABC transporter permease 1904704 4687363 Pnap_1789 Polaromonas naphthalenivorans CJ2 ABC transporter permease YP_982020.1 1903901 D 365044 CDS YP_982021.1 121604692 4688486 1904723..1905754 1 NC_008781.1 PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_2658 ABC-type transport system periplasmic component; hypothetical protein 1905754 4688486 Pnap_1790 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982021.1 1904723 D 365044 CDS YP_982022.1 121604693 4686685 1905751..1906464 1 NC_008781.1 KEGG: pol:Bpro_2657 hypothetical protein; hypothetical protein 1906464 4686685 Pnap_1791 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982022.1 1905751 D 365044 CDS YP_982023.1 121604694 4688387 1906461..1906763 1 NC_008781.1 KEGG: pol:Bpro_2656 hypothetical protein; hypothetical protein 1906763 4688387 Pnap_1792 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982023.1 1906461 D 365044 CDS YP_982024.1 121604695 4688761 complement(1906803..1907021) 1 NC_008781.1 KEGG: pol:Bpro_2655 hypothetical protein; hypothetical protein 1907021 4688761 Pnap_1793 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982024.1 1906803 R 365044 CDS YP_982025.1 121604696 4687672 1907260..1907784 1 NC_008781.1 KEGG: pol:Bpro_2652 hypothetical protein; hypothetical protein 1907784 4687672 Pnap_1794 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982025.1 1907260 D 365044 CDS YP_982026.1 121604697 4690017 1907781..1909058 1 NC_008781.1 KEGG: pol:Bpro_2651 putative heat shock protein; putative heat shock protein 1909058 4690017 Pnap_1795 Polaromonas naphthalenivorans CJ2 putative heat shock protein YP_982026.1 1907781 D 365044 CDS YP_982027.1 121604698 4689075 complement(1909102..1909881) 1 NC_008781.1 TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; glutaredoxin; Redoxin domain protein; KEGG: ava:Ava_4981 glutaredoxin-like region; glutaredoxin family protein 1909881 4689075 Pnap_1796 Polaromonas naphthalenivorans CJ2 glutaredoxin family protein YP_982027.1 1909102 R 365044 CDS YP_982028.1 121604699 4686198 1910038..1910532 1 NC_008781.1 KEGG: pol:Bpro_1203 hypothetical protein; hypothetical protein 1910532 4686198 Pnap_1797 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982028.1 1910038 D 365044 CDS YP_982029.1 121604700 4686418 1910653..1911135 1 NC_008781.1 KEGG: pol:Bpro_2648 hypothetical protein; hypothetical protein 1911135 4686418 Pnap_1798 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982029.1 1910653 D 365044 CDS YP_982030.1 121604701 4689499 1911362..1911958 1 NC_008781.1 KEGG: pol:Bpro_3875 hypothetical protein; hypothetical protein 1911958 4689499 Pnap_1799 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982030.1 1911362 D 365044 CDS YP_982031.1 121604702 4687935 1912039..1912662 1 NC_008781.1 PFAM: isochorismatase hydrolase; KEGG: pol:Bpro_2647 isochorismatase hydrolase; isochorismatase hydrolase 1912662 4687935 Pnap_1800 Polaromonas naphthalenivorans CJ2 isochorismatase hydrolase YP_982031.1 1912039 D 365044 CDS YP_982032.1 121604703 4686539 complement(1912698..1913099) 1 NC_008781.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_2640 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1913099 4686539 Pnap_1801 Polaromonas naphthalenivorans CJ2 glyoxalase/bleomycin resistance protein/dioxygenase YP_982032.1 1912698 R 365044 CDS YP_982033.1 121604704 4686528 complement(1913168..1913593) 1 NC_008781.1 KEGG: pol:Bpro_2637 hypothetical protein; hypothetical protein 1913593 4686528 Pnap_1802 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982033.1 1913168 R 365044 CDS YP_982034.1 121604705 4686254 complement(1913691..1915421) 1 NC_008781.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3826 ABC transporter related; ABC transporter 1915421 4686254 Pnap_1803 Polaromonas naphthalenivorans CJ2 ABC transporter YP_982034.1 1913691 R 365044 CDS YP_982035.1 121604706 4687608 1915717..1917630 1 NC_008781.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 1917630 prpE 4687608 prpE Polaromonas naphthalenivorans CJ2 propionyl-CoA synthetase YP_982035.1 1915717 D 365044 CDS YP_982036.1 121604707 4688308 complement(1917738..1918247) 1 NC_008781.1 KEGG: pol:Bpro_5569 ISSod10, transposase OrfB; ISSod10, transposase OrfB 1918247 4688308 Pnap_1805 Polaromonas naphthalenivorans CJ2 ISSod10, transposase OrfB YP_982036.1 1917738 R 365044 CDS YP_982037.1 121604708 4688949 complement(1918276..1918647) 1 NC_008781.1 KEGG: pol:Bpro_5570 transposase and inactivated derivative; transposase and inactivated derivative 1918647 4688949 Pnap_1806 Polaromonas naphthalenivorans CJ2 transposase and inactivated derivative YP_982037.1 1918276 R 365044 CDS YP_982038.1 121604709 4689328 complement(1918679..1919200) 1 NC_008781.1 KEGG: pol:Bpro_1991 hypothetical protein; hypothetical protein 1919200 4689328 Pnap_1807 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982038.1 1918679 R 365044 CDS YP_982039.1 121604710 4690065 complement(1919309..1921327) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1992 ABC transporter related; ABC transporter-like protein 1921327 4690065 Pnap_1808 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982039.1 1919309 R 365044 CDS YP_982040.1 121604711 4688794 complement(1921411..1922307) 1 NC_008781.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1922307 4688794 Pnap_1809 Polaromonas naphthalenivorans CJ2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_982040.1 1921411 R 365044 CDS YP_982041.1 121604712 4687659 complement(1922304..1923524) 1 NC_008781.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1923524 4687659 Pnap_1810 Polaromonas naphthalenivorans CJ2 succinyl-diaminopimelate desuccinylase YP_982041.1 1922304 R 365044 CDS YP_982042.1 121604713 4688663 complement(1923532..1924674) 1 NC_008781.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_1995 twitching motility protein; twitching motility protein 1924674 4688663 Pnap_1811 Polaromonas naphthalenivorans CJ2 twitching motility protein YP_982042.1 1923532 R 365044 CDS YP_982043.1 121604714 4689887 complement(1924731..1925558) 1 NC_008781.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1925558 dapD 4689887 dapD Polaromonas naphthalenivorans CJ2 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_982043.1 1924731 R 365044 CDS YP_982044.1 121604715 4687749 complement(1925570..1926778) 1 NC_008781.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 1926778 4687749 Pnap_1813 Polaromonas naphthalenivorans CJ2 succinyldiaminopimelate transaminase YP_982044.1 1925570 R 365044 CDS YP_982045.1 121604716 4687255 1927165..1930710 1 NC_008781.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: pol:Bpro_2594 chromosome segregation protein SMC; chromosome segregation protein SMC 1930710 4687255 Pnap_1814 Polaromonas naphthalenivorans CJ2 chromosome segregation protein SMC YP_982045.1 1927165 D 365044 CDS YP_982046.1 121604717 4687050 1930726..1931823 1 NC_008781.1 SMART: ZipA, C-terminal FtsZ-binding region; KEGG: pol:Bpro_2593 hypothetical protein; ZipA protein 1931823 4687050 Pnap_1815 Polaromonas naphthalenivorans CJ2 ZipA protein YP_982046.1 1930726 D 365044 CDS YP_982047.1 121604718 4689447 1931896..1934019 1 NC_008781.1 KEGG: pol:Bpro_2592 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like; DNA ligase 1934019 4689447 Pnap_1816 Polaromonas naphthalenivorans CJ2 DNA ligase YP_982047.1 1931896 D 365044 CDS YP_982048.1 121604719 4688072 complement(1934031..1934450) 1 NC_008781.1 PFAM: protein of unknown function DUF454; KEGG: xac:XAC0632 hypothetical protein; hypothetical protein 1934450 4688072 Pnap_1817 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982048.1 1934031 R 365044 CDS YP_982049.1 121604720 4688411 1934489..1935028 1 NC_008781.1 KEGG: pol:Bpro_2590 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 1935028 4688411 Pnap_1818 Polaromonas naphthalenivorans CJ2 peptide deformylase YP_982049.1 1934489 D 365044 CDS YP_982050.1 121604721 4686355 complement(1935055..1937649) 1 NC_008781.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1937649 4686355 Pnap_1819 Polaromonas naphthalenivorans CJ2 PII uridylyl-transferase YP_982050.1 1935055 R 365044 CDS YP_982051.1 121604722 4686989 complement(1937706..1938539) 1 NC_008781.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pol:Bpro_2587 methionine aminopeptidase, type I; methionine aminopeptidase 1938539 4686989 Pnap_1820 Polaromonas naphthalenivorans CJ2 methionine aminopeptidase YP_982051.1 1937706 R 365044 CDS YP_982052.1 121604723 4686717 1938768..1942790 1 NC_008781.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1942790 4686717 Pnap_1821 Polaromonas naphthalenivorans CJ2 phosphoribosylformylglycinamidine synthase YP_982052.1 1938768 D 365044 CDS YP_982053.1 121604724 4686749 1942861..1943106 1 NC_008781.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rco:RC1319 hypothetical protein; prevent-host-death family protein 1943106 4686749 Pnap_1822 Polaromonas naphthalenivorans CJ2 prevent-host-death family protein YP_982053.1 1942861 D 365044 CDS YP_982054.1 121604725 4686780 1943103..1943531 1 NC_008781.1 PFAM: PilT protein domain protein; KEGG: gvi:glr2382 plasmid stability protein StbB homolog; PilT domain-containing protein 1943531 4686780 Pnap_1823 Polaromonas naphthalenivorans CJ2 PilT domain-containing protein YP_982054.1 1943103 D 365044 CDS YP_982055.1 121604726 4686817 complement(1943648..1944124) 1 NC_008781.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 1944124 4686817 Pnap_1824 Polaromonas naphthalenivorans CJ2 putative transposase of insertion sequence ISRm10-1 YP_982055.1 1943648 R 365044 CDS YP_982056.1 121604727 4686868 complement(1944186..1944602) 1 NC_008781.1 KEGG: ana:alr1858 transposase; hypothetical protein 1944602 4686868 Pnap_1825 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982056.1 1944186 R 365044 CDS YP_982057.1 121604728 4687652 complement(1945022..1945921) 1 NC_008781.1 PFAM: Aldose 1-epimerase; KEGG: xom:XOO_0261 transglycolase; aldose 1-epimerase 1945921 4687652 Pnap_1826 Polaromonas naphthalenivorans CJ2 aldose 1-epimerase YP_982057.1 1945022 R 365044 CDS YP_982058.1 121604729 4687361 complement(1945960..1946649) 1 NC_008781.1 PFAM: OmpW family protein; KEGG: pha:PSHAa2155 protein W (OmpW); OmpW family protein 1946649 4687361 Pnap_1827 Polaromonas naphthalenivorans CJ2 OmpW family protein YP_982058.1 1945960 R 365044 CDS YP_982059.1 121604730 4687631 complement(1946669..1948285) 1 NC_008781.1 KEGG: bxe:Bxe_B0552 hypothetical protein; hypothetical protein 1948285 4687631 Pnap_1828 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982059.1 1946669 R 365044 CDS YP_982060.1 121604731 4688513 1948433..1949167 1 NC_008781.1 PFAM: protein of unknown function DUF1624; KEGG: rfr:Rfer_2413 protein of unknown function DUF1624; hypothetical protein 1949167 4688513 Pnap_1829 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982060.1 1948433 D 365044 CDS YP_982061.1 121604732 4688107 1949301..1951847 1 NC_008781.1 PFAM: ThiJ/PfpI domain protein; Catalase domain protein; KEGG: nmu:Nmul_A1515 catalase; catalase 1951847 4688107 Pnap_1830 Polaromonas naphthalenivorans CJ2 catalase YP_982061.1 1949301 D 365044 CDS YP_982062.1 121604733 4688239 complement(1951911..1952702) 1 NC_008781.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_2585 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1952702 4688239 Pnap_1831 Polaromonas naphthalenivorans CJ2 PpiC-type peptidyl-prolyl cis-trans isomerase YP_982062.1 1951911 R 365044 CDS YP_982063.1 121604734 4688261 complement(1952788..1953087) 1 NC_008781.1 PFAM: BolA family protein; KEGG: pol:Bpro_2584 BolA-like protein; BolA family protein 1953087 4688261 Pnap_1832 Polaromonas naphthalenivorans CJ2 BolA family protein YP_982063.1 1952788 R 365044 CDS YP_982064.1 121604735 4688429 1953201..1954307 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: noc:Noc_2198 transposase, IS605 OrfB; IS605 family transposase OrfB 1954307 4688429 Pnap_1833 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_982064.1 1953201 D 365044 CDS YP_982065.1 121604736 4689038 complement(1954320..1954946) 1 NC_008781.1 PFAM: Intracellular septation protein A; KEGG: pol:Bpro_2583 intracellular septation protein A; intracellular septation protein A 1954946 4689038 Pnap_1834 Polaromonas naphthalenivorans CJ2 intracellular septation protein A YP_982065.1 1954320 R 365044 CDS YP_982066.1 121604737 4688512 complement(1955019..1955429) 1 NC_008781.1 KEGG: pol:Bpro_2582 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 1955429 4688512 Pnap_1835 Polaromonas naphthalenivorans CJ2 methionine-R-sulfoxide reductase YP_982066.1 1955019 R 365044 CDS YP_982067.1 121604738 4687747 complement(1955463..1956956) 1 NC_008781.1 PFAM: protein of unknown function UPF0061; KEGG: pol:Bpro_2581 protein of unknown function UPF0061; hypothetical protein 1956956 4687747 Pnap_1836 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982067.1 1955463 R 365044 CDS YP_982068.1 121604739 4688912 1957151..1958776 1 NC_008781.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1958776 4688912 Pnap_1837 Polaromonas naphthalenivorans CJ2 long-chain-fatty-acid--CoA ligase YP_982068.1 1957151 D 365044 CDS YP_982069.1 121604740 4688986 1958853..1959806 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_2577 inner-membrane translocator; inner-membrane translocator 1959806 4688986 Pnap_1838 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_982069.1 1958853 D 365044 CDS YP_982070.1 121604741 4689316 1959812..1961116 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_2576 inner-membrane translocator; inner-membrane translocator 1961116 4689316 Pnap_1839 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_982070.1 1959812 D 365044 CDS YP_982071.1 121604742 4689036 1961113..1961913 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2575 ABC transporter related; ABC transporter-like protein 1961913 4689036 Pnap_1840 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982071.1 1961113 D 365044 CDS YP_982072.1 121604743 4690019 1961915..1962610 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2574 ABC transporter related; ABC transporter-like protein 1962610 4690019 Pnap_1841 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982072.1 1961915 D 365044 CDS YP_982073.1 121604744 4689797 1962822..1964921 1 NC_008781.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_2573 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 1964921 4689797 Pnap_1842 Polaromonas naphthalenivorans CJ2 3-hydroxyacyl-CoA dehydrogenase YP_982073.1 1962822 D 365044 CDS YP_982074.1 121604745 4689849 1964964..1966139 1 NC_008781.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1966139 4689849 Pnap_1843 Polaromonas naphthalenivorans CJ2 acetyl-CoA acetyltransferase YP_982074.1 1964964 D 365044 CDS YP_982075.1 121604746 4689030 1966374..1967165 1 NC_008781.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 1967165 4689030 Pnap_1844 Polaromonas naphthalenivorans CJ2 gluconate 5-dehydrogenase YP_982075.1 1966374 D 365044 CDS YP_982076.1 121604747 4689683 1967170..1967613 1 NC_008781.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2566 phenylacetic acid degradation-related protein; hypothetical protein 1967613 4689683 Pnap_1845 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982076.1 1967170 D 365044 CDS YP_982077.1 121604748 4689919 1967729..1968745 1 NC_008781.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_2565 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 1968745 4689919 Pnap_1846 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_982077.1 1967729 D 365044 CDS YP_982078.1 121604749 4689871 1968768..1970420 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_2564 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1970420 4689871 Pnap_1847 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_982078.1 1968768 D 365044 CDS YP_982079.1 121604750 4689663 1970452..1971399 1 NC_008781.1 KEGG: pol:Bpro_2563 putative glutathione S-transferase-related protein; putative glutathione S-transferase-like protein 1971399 4689663 Pnap_1848 Polaromonas naphthalenivorans CJ2 putative glutathione S-transferase-like protein YP_982079.1 1970452 D 365044 CDS YP_982080.1 121604751 4689473 1971396..1971845 1 NC_008781.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2562 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1971845 4689473 Pnap_1849 Polaromonas naphthalenivorans CJ2 N-acetyltransferase GCN5 YP_982080.1 1971396 D 365044 CDS YP_982081.1 121604752 4689433 complement(1971846..1972145) 1 NC_008781.1 hypothetical protein 1972145 4689433 Pnap_1850 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982081.1 1971846 R 365044 CDS YP_982082.1 121604753 4688885 1972603..1973391 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_2543 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 1973391 4688885 Pnap_1851 Polaromonas naphthalenivorans CJ2 two component LuxR family transcriptional regulator YP_982082.1 1972603 D 365044 CDS YP_982083.1 121604754 4688777 1973437..1973772 1 NC_008781.1 hypothetical protein 1973772 4688777 Pnap_1852 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982083.1 1973437 D 365044 CDS YP_982084.1 121604755 4688751 1973826..1974431 1 NC_008781.1 KEGG: pol:Bpro_2559 hypothetical protein; Fis family transcriptional regulator 1974431 4688751 Pnap_1853 Polaromonas naphthalenivorans CJ2 Fis family transcriptional regulator YP_982084.1 1973826 D 365044 CDS YP_982085.1 121604756 4688215 complement(1974599..1975828) 1 NC_008781.1 PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: serA; D-3-phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 1975828 4688215 Pnap_1854 Polaromonas naphthalenivorans CJ2 D-isomer specific 2-hydroxyacid dehydrogenase YP_982085.1 1974599 R 365044 CDS YP_982086.1 121604757 4688276 complement(1976450..1976899) 1 NC_008781.1 hypothetical protein 1976899 4688276 Pnap_1855 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982086.1 1976450 R 365044 CDS YP_982087.1 121604758 4687959 1977412..1980303 1 NC_008781.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1980303 sucA 4687959 sucA Polaromonas naphthalenivorans CJ2 2-oxoglutarate dehydrogenase E1 component YP_982087.1 1977412 D 365044 CDS YP_982088.1 121604759 4687010 1980352..1981614 1 NC_008781.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1981614 4687010 Pnap_1857 Polaromonas naphthalenivorans CJ2 dihydrolipoamide succinyltransferase YP_982088.1 1980352 D 365044 CDS YP_982089.1 121604760 4687284 1981645..1983114 1 NC_008781.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1983114 4687284 Pnap_1858 Polaromonas naphthalenivorans CJ2 dihydrolipoamide dehydrogenase YP_982089.1 1981645 D 365044 CDS YP_982090.1 121604761 4686655 1983134..1984237 1 NC_008781.1 PFAM: AFG1-family ATPase; KEGG: pol:Bpro_2621 AFG1-like ATPase; AFG1 family ATPase 1984237 4686655 Pnap_1859 Polaromonas naphthalenivorans CJ2 AFG1 family ATPase YP_982090.1 1983134 D 365044 CDS YP_982091.1 121604762 4686211 1984462..1984881 1 NC_008781.1 KEGG: pol:Bpro_2620 hypothetical protein; hypothetical protein 1984881 4686211 Pnap_1860 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982091.1 1984462 D 365044 CDS YP_982092.1 121604763 4686184 complement(1984891..1985649) 1 NC_008781.1 SMART: protein phosphatase 2C domain protein; KEGG: pol:Bpro_2619 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein 1985649 4686184 Pnap_1861 Polaromonas naphthalenivorans CJ2 protein phosphatase 2C domain-containing protein YP_982092.1 1984891 R 365044 CDS YP_982093.1 121604764 4686160 1985730..1985933 1 NC_008781.1 PFAM: protein of unknown function DUF465; KEGG: pol:Bpro_2618 protein of unknown function DUF465; hypothetical protein 1985933 4686160 Pnap_1862 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982093.1 1985730 D 365044 CDS YP_982094.1 121604765 4686469 1985933..1987939 1 NC_008781.1 SMART: helicase c2; KEGG: pol:Bpro_2617 helicase C2; helicase c2 1987939 4686469 Pnap_1863 Polaromonas naphthalenivorans CJ2 helicase c2 YP_982094.1 1985933 D 365044 CDS YP_982095.1 121604766 4686410 complement(1987902..1988726) 1 NC_008781.1 KEGG: pol:Bpro_2616 putative transmembrane protein; hypothetical protein 1988726 4686410 Pnap_1864 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982095.1 1987902 R 365044 CDS YP_982096.1 121604767 4686319 1988744..1989778 1 NC_008781.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_2615 pseudouridine synthase, RluD; RluA family pseudouridine synthase 1989778 4686319 Pnap_1865 Polaromonas naphthalenivorans CJ2 RluA family pseudouridine synthase YP_982096.1 1988744 D 365044 CDS YP_982097.1 121604768 4687064 1989882..1990547 1 NC_008781.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pol:Bpro_2614 putative transcriptional regulator; putative transcriptional regulator 1990547 4687064 Pnap_1866 Polaromonas naphthalenivorans CJ2 putative transcriptional regulator YP_982097.1 1989882 D 365044 CDS YP_982098.1 121604769 4688376 1990586..1992169 1 NC_008781.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_2613 pseudouridine synthase, Rsu; pseudouridine synthase 1992169 4688376 Pnap_1867 Polaromonas naphthalenivorans CJ2 pseudouridine synthase YP_982098.1 1990586 D 365044 CDS YP_982099.1 121604770 4688707 1992298..1992723 1 NC_008781.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1992723 ndk 4688707 ndk Polaromonas naphthalenivorans CJ2 nucleoside diphosphate kinase YP_982099.1 1992298 D 365044 CDS YP_982100.1 121604771 4687237 1992803..1993951 1 NC_008781.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: pol:Bpro_2611 hypothetical protein; radical SAM protein 1993951 4687237 Pnap_1869 Polaromonas naphthalenivorans CJ2 radical SAM protein YP_982100.1 1992803 D 365044 CDS YP_982101.1 121604772 4686092 1993948..1994754 1 NC_008781.1 KEGG: pol:Bpro_2610 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1994754 4686092 Pnap_1870 Polaromonas naphthalenivorans CJ2 type IV pilus biogenesis/stability protein PilW YP_982101.1 1993948 D 365044 CDS YP_982102.1 121604773 4686523 1994765..1995694 1 NC_008781.1 KEGG: pol:Bpro_2609 hypothetical protein; hypothetical protein 1995694 4686523 Pnap_1871 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982102.1 1994765 D 365044 CDS YP_982103.1 121604774 4688101 1995694..1996968 1 NC_008781.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1996968 ispG 4688101 ispG Polaromonas naphthalenivorans CJ2 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_982103.1 1995694 D 365044 CDS YP_982104.1 121604775 4689814 1996974..1998344 1 NC_008781.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1998344 hisS 4689814 hisS Polaromonas naphthalenivorans CJ2 histidyl-tRNA synthetase YP_982104.1 1996974 D 365044 CDS YP_982105.1 121604776 4689114 1998413..1999105 1 NC_008781.1 KEGG: pol:Bpro_2606 hypothetical protein; hypothetical protein 1999105 4689114 Pnap_1874 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982105.1 1998413 D 365044 CDS YP_982106.1 121604777 4686778 1999102..2000247 1 NC_008781.1 SMART: Pyrrolo-quinoline quinone; KEGG: pol:Bpro_2605 pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 2000247 4686778 Pnap_1875 Polaromonas naphthalenivorans CJ2 Pyrrolo-quinoline quinone YP_982106.1 1999102 D 365044 CDS YP_982107.1 121604778 4686341 2000282..2001619 1 NC_008781.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2001619 engA 4686341 engA Polaromonas naphthalenivorans CJ2 GTP-binding protein EngA YP_982107.1 2000282 D 365044 CDS YP_982108.1 121604779 4686093 2001676..2001945 1 NC_008781.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 2001945 hfq 4686093 hfq Polaromonas naphthalenivorans CJ2 RNA-binding protein Hfq YP_982108.1 2001676 D 365044 CDS YP_982109.1 121604780 4686476 2001963..2003114 1 NC_008781.1 PFAM: GTP-binding protein, HSR1-related; KEGG: pol:Bpro_2602 GTP-binding protein, HSR1-related; HSR1-like GTP-binding protein 2003114 4686476 Pnap_1878 Polaromonas naphthalenivorans CJ2 HSR1-like GTP-binding protein YP_982109.1 2001963 D 365044 CDS YP_982110.1 121604781 4686515 2003180..2004595 1 NC_008781.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pol:Bpro_2601 HflK protein; HflK protein 2004595 4686515 Pnap_1879 Polaromonas naphthalenivorans CJ2 HflK protein YP_982110.1 2003180 D 365044 CDS YP_982111.1 121604782 4686170 2004608..2005507 1 NC_008781.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pol:Bpro_2600 HflC protein; HflC protein 2005507 4686170 Pnap_1880 Polaromonas naphthalenivorans CJ2 HflC protein YP_982111.1 2004608 D 365044 CDS YP_982112.1 121604783 4686612 2005520..2005708 1 NC_008781.1 KEGG: pol:Bpro_2599 hypothetical protein; hypothetical protein 2005708 4686612 Pnap_1881 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982112.1 2005520 D 365044 CDS YP_982113.1 121604784 4686658 2005860..2007029 1 NC_008781.1 PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: pol:Bpro_2598 tRNA synthetase, class II (G, H, P and S); class II tRNA synthetase 2007029 4686658 Pnap_1882 Polaromonas naphthalenivorans CJ2 class II tRNA synthetase YP_982113.1 2005860 D 365044 CDS YP_982114.1 121604785 4687303 2007118..2008458 1 NC_008781.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2008458 4687303 Pnap_1883 Polaromonas naphthalenivorans CJ2 adenylosuccinate synthetase YP_982114.1 2007118 D 365044 CDS YP_982115.1 121604786 4687352 2008536..2009060 1 NC_008781.1 PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_2596 phosphoribosyltransferase; phosphoribosyltransferase 2009060 4687352 Pnap_1884 Polaromonas naphthalenivorans CJ2 phosphoribosyltransferase YP_982115.1 2008536 D 365044 CDS YP_982116.1 121604787 4687392 2009191..2010384 1 NC_008781.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: pol:Bpro_2595 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme; cystathionine beta-lyase 2010384 4687392 Pnap_1885 Polaromonas naphthalenivorans CJ2 cystathionine beta-lyase YP_982116.1 2009191 D 365044 CDS YP_982117.1 121604788 4687177 2010453..2010641 1 NC_008781.1 KEGG: rfr:Rfer_2230 hypothetical protein; hypothetical protein 2010641 4687177 Pnap_1886 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982117.1 2010453 D 365044 CDS YP_982118.1 121604789 4687894 complement(2010785..2011843) 1 NC_008781.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 2011843 4687894 Pnap_1887 Polaromonas naphthalenivorans CJ2 tRNA 2-selenouridine synthase YP_982118.1 2010785 R 365044 CDS YP_982119.1 121604790 4688720 complement(2011840..2012457) 1 NC_008781.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: pol:Bpro_3031 arylesterase; GDSL family lipase 2012457 4688720 Pnap_1888 Polaromonas naphthalenivorans CJ2 GDSL family lipase YP_982119.1 2011840 R 365044 CDS YP_982120.1 121604791 4688768 2012582..2013298 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2425 ABC transporter related; ABC transporter-like protein 2013298 4688768 Pnap_1889 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982120.1 2012582 D 365044 CDS YP_982121.1 121604792 4688655 2013429..2014190 1 NC_008781.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: pol:Bpro_3029 RNA methyltransferase TrmH, group 3; RNA methyltransferase 2014190 4688655 Pnap_1890 Polaromonas naphthalenivorans CJ2 RNA methyltransferase YP_982121.1 2013429 D 365044 CDS YP_982122.1 121604793 4689356 complement(2014293..2014553) 1 NC_008781.1 hypothetical protein 2014553 4689356 Pnap_1891 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982122.1 2014293 R 365044 CDS YP_982123.1 121604794 4689408 2014716..2015102 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: dar:Daro_1022 cytochrome c-552 precursor; class I cytochrome c 2015102 4689408 Pnap_1892 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_982123.1 2014716 D 365044 CDS YP_982124.1 121604795 4689255 complement(2015120..2015446) 1 NC_008781.1 KEGG: pol:Bpro_3006 hypothetical protein; hypothetical protein 2015446 4689255 Pnap_1893 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982124.1 2015120 R 365044 CDS YP_982125.1 121604796 4690165 complement(2015745..2016677) 1 NC_008781.1 PFAM: Ku domain protein; KEGG: pol:Bpro_3002 hypothetical protein; Ku domain-containing protein 2016677 4690165 Pnap_1894 Polaromonas naphthalenivorans CJ2 Ku domain-containing protein YP_982125.1 2015745 R 365044 CDS YP_982126.1 121604797 4689834 complement(2016680..2017294) 1 NC_008781.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pae:PA0355 protease PfpI; PfpI family intracellular peptidase 2017294 4689834 Pnap_1895 Polaromonas naphthalenivorans CJ2 PfpI family intracellular peptidase YP_982126.1 2016680 R 365044 CDS YP_982127.1 121604798 4689717 2017502..2017972 1 NC_008781.1 PFAM: CHRD domain containing protein; KEGG: pol:Bpro_3001 chordin; CHRD domain-containing protein 2017972 4689717 Pnap_1896 Polaromonas naphthalenivorans CJ2 CHRD domain-containing protein YP_982127.1 2017502 D 365044 CDS YP_982128.1 121604799 4689454 2018240..2020624 1 NC_008781.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rfr:Rfer_2734 radical SAM; radical SAM domain-containing protein 2020624 4689454 Pnap_1897 Polaromonas naphthalenivorans CJ2 radical SAM domain-containing protein YP_982128.1 2018240 D 365044 CDS YP_982129.1 121604800 4689117 complement(2020730..2021227) 1 NC_008781.1 PFAM: protein of unknown function DUF1294; KEGG: neu:NE0717 cold-shock DNA-binding domain; hypothetical protein 2021227 4689117 Pnap_1898 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982129.1 2020730 R 365044 CDS YP_982130.1 121604801 4689974 complement(2021584..2023119) 1 NC_008781.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dar:Daro_2666 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2023119 4689974 Pnap_1899 Polaromonas naphthalenivorans CJ2 filamentation induced by cAMP protein fic YP_982130.1 2021584 R 365044 CDS YP_982131.1 121604802 4689896 complement(2023210..2024109) 1 NC_008781.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_2993 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2024109 4689896 Pnap_1900 Polaromonas naphthalenivorans CJ2 L-carnitine dehydratase/bile acid-inducible protein F YP_982131.1 2023210 R 365044 CDS YP_982132.1 121604803 4689053 complement(2024260..2025444) 1 NC_008781.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 2025444 4689053 Pnap_1901 Polaromonas naphthalenivorans CJ2 4-hydroxybenzoate 3-monooxygenase YP_982132.1 2024260 R 365044 CDS YP_982133.1 121604804 4689058 2025605..2026426 1 NC_008781.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2991 transcriptional regulator, IclR family; beta-ketoadipate pathway transcription regulator 2026426 4689058 Pnap_1902 Polaromonas naphthalenivorans CJ2 beta-ketoadipate pathway transcription regulator YP_982133.1 2025605 D 365044 CDS YP_982134.1 121604805 4689008 complement(2026438..2027172) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2989 ABC transporter related; ABC transporter-like protein 2027172 4689008 Pnap_1903 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982134.1 2026438 R 365044 CDS YP_982135.1 121604806 4688974 complement(2027169..2027933) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2988 ABC transporter related; ABC transporter-like protein 2027933 4688974 Pnap_1904 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982135.1 2027169 R 365044 CDS YP_982136.1 121604807 4688451 complement(2027926..2028942) 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_2987 inner-membrane translocator; inner-membrane translocator 2028942 4688451 Pnap_1905 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_982136.1 2027926 R 365044 CDS YP_982137.1 121604808 4689017 complement(2028939..2029802) 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_1621 inner-membrane translocator; inner-membrane translocator 2029802 4689017 Pnap_1906 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_982137.1 2028939 R 365044 CDS YP_982138.1 121604809 4689049 complement(2029847..2031034) 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2984 twin-arginine translocation pathway signal; extracellular ligand-binding receptor 2031034 4689049 Pnap_1907 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_982138.1 2029847 R 365044 CDS YP_982139.1 121604810 4688475 complement(2031195..2031689) 1 NC_008781.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: pol:Bpro_2982 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 2031689 4688475 Pnap_1908 Polaromonas naphthalenivorans CJ2 flavodoxin/nitric oxide synthase YP_982139.1 2031195 R 365044 CDS YP_982140.1 121604811 4687558 complement(2032271..2032780) 1 NC_008781.1 KEGG: pol:Bpro_5569 ISSod10, transposase OrfB; ISSod10, transposase OrfB 2032780 4687558 Pnap_1909 Polaromonas naphthalenivorans CJ2 ISSod10, transposase OrfB YP_982140.1 2032271 R 365044 CDS YP_982141.1 121604812 4688254 complement(2032809..2033342) 1 NC_008781.1 KEGG: pol:Bpro_5570 transposase and inactivated derivative; transposase and inactivated derivative 2033342 4688254 Pnap_1910 Polaromonas naphthalenivorans CJ2 transposase and inactivated derivative YP_982141.1 2032809 R 365044 CDS YP_982142.1 121604813 4687985 complement(2033448..2034707) 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_2961 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 2034707 4687985 Pnap_1911 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_982142.1 2033448 R 365044 CDS YP_982143.1 121604814 4688502 complement(2034775..2035866) 1 NC_008781.1 PFAM: aminoglycoside phosphotransferase; KEGG: pol:Bpro_2960 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2035866 4688502 Pnap_1912 Polaromonas naphthalenivorans CJ2 aminoglycoside phosphotransferase YP_982143.1 2034775 R 365044 CDS YP_982144.1 121604815 4687523 complement(2035897..2036622) 1 NC_008781.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_2959 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 2036622 4687523 Pnap_1913 Polaromonas naphthalenivorans CJ2 CRP/FNR family transcriptional regulator YP_982144.1 2035897 R 365044 CDS YP_982145.1 121604816 4686893 complement(2036977..2037756) 1 NC_008781.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2037756 4686893 Pnap_1914 Polaromonas naphthalenivorans CJ2 enoyl-CoA hydratase YP_982145.1 2036977 R 365044 CDS YP_982146.1 121604817 4687060 complement(2037758..2039320) 1 NC_008781.1 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase 2039320 4687060 Pnap_1915 Polaromonas naphthalenivorans CJ2 3-hydroxyacyl-CoA dehydrogenase YP_982146.1 2037758 R 365044 CDS YP_982147.1 121604818 4686922 complement(2039336..2040343) 1 NC_008781.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_2956 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2040343 4686922 Pnap_1916 Polaromonas naphthalenivorans CJ2 D-isomer specific 2-hydroxyacid dehydrogenase YP_982147.1 2039336 R 365044 CDS YP_982148.1 121604819 4686797 complement(2040436..2040855) 1 NC_008781.1 KEGG: pol:Bpro_2955 hypothetical protein; hypothetical protein 2040855 4686797 Pnap_1917 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982148.1 2040436 R 365044 CDS YP_982149.1 121604820 4686755 complement(2040992..2041696) 1 NC_008781.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 2041696 4686755 Pnap_1918 Polaromonas naphthalenivorans CJ2 LexA repressor YP_982149.1 2040992 R 365044 CDS YP_982150.1 121604821 4686725 2041822..2042787 1 NC_008781.1 PFAM: Asparaginase/glutaminase; KEGG: pol:Bpro_2953 asparaginase; asparaginase 2042787 4686725 Pnap_1919 Polaromonas naphthalenivorans CJ2 asparaginase YP_982150.1 2041822 D 365044 CDS YP_982151.1 121604822 4686456 complement(2042834..2043490) 1 NC_008781.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2043490 adk 4686456 adk Polaromonas naphthalenivorans CJ2 adenylate kinase YP_982151.1 2042834 R 365044 CDS YP_982152.1 121604823 4686967 complement(2043646..2044428) 1 NC_008781.1 KEGG: pol:Bpro_2951 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 2044428 4686967 Pnap_1921 Polaromonas naphthalenivorans CJ2 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_982152.1 2043646 R 365044 CDS YP_982153.1 121604824 4686992 complement(2044436..2044618) 1 NC_008781.1 PFAM: protein of unknown function DUF343; KEGG: pol:Bpro_2950 protein of unknown function DUF343; hypothetical protein 2044618 4686992 Pnap_1922 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982153.1 2044436 R 365044 CDS YP_982154.1 121604825 4686265 complement(2044599..2045630) 1 NC_008781.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2045630 lpxK 4686265 lpxK Polaromonas naphthalenivorans CJ2 tetraacyldisaccharide 4'-kinase YP_982154.1 2044599 R 365044 CDS YP_982155.1 121604826 4686332 complement(2045673..2046107) 1 NC_008781.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2948 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2046107 4686332 Pnap_1924 Polaromonas naphthalenivorans CJ2 biopolymer transport protein ExbD/TolR YP_982155.1 2045673 R 365044 CDS YP_982156.1 121604827 4686284 complement(2046104..2046727) 1 NC_008781.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2947 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2046727 4686284 Pnap_1925 Polaromonas naphthalenivorans CJ2 MotA/TolQ/ExbB proton channel YP_982156.1 2046104 R 365044 CDS YP_982157.1 121604828 4686356 2047068..2048387 1 NC_008781.1 KEGG: pol:Bpro_2946 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit 2048387 4686356 Pnap_1926 Polaromonas naphthalenivorans CJ2 exodeoxyribonuclease VII large subunit YP_982157.1 2047068 D 365044 CDS YP_982158.1 121604829 4686335 2048446..2049027 1 NC_008781.1 PFAM: manganese and iron superoxide dismutase; KEGG: pol:Bpro_2945 superoxide dismutase; superoxide dismutase 2049027 4686335 Pnap_1927 Polaromonas naphthalenivorans CJ2 superoxide dismutase YP_982158.1 2048446 D 365044 CDS YP_982159.1 121604830 4686363 complement(2049097..2049591) 1 NC_008781.1 PFAM: protein of unknown function DUF192; KEGG: pol:Bpro_2944 protein of unknown function DUF192; hypothetical protein 2049591 4686363 Pnap_1928 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982159.1 2049097 R 365044 CDS YP_982160.1 121604831 4686375 complement(2049705..2050010) 1 NC_008781.1 KEGG: pol:Bpro_2943 TolA protein; TolA protein 2050010 4686375 Pnap_1929 Polaromonas naphthalenivorans CJ2 TolA protein YP_982160.1 2049705 R 365044 CDS YP_982161.1 121604832 4686391 2050235..2051488 1 NC_008781.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 2051488 4686391 Pnap_1930 Polaromonas naphthalenivorans CJ2 isocitrate dehydrogenase YP_982161.1 2050235 D 365044 CDS YP_982162.1 121604833 4686379 2051660..2051962 1 NC_008781.1 KEGG: bxe:Bxe_A3769 putative transposase; hypothetical protein 2051962 4686379 Pnap_1931 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982162.1 2051660 D 365044 CDS YP_982163.1 121604834 4686395 2052100..2052498 1 NC_008781.1 PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_0624 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 2052498 4686395 Pnap_1932 Polaromonas naphthalenivorans CJ2 RNP-1 like RNA-binding protein YP_982163.1 2052100 D 365044 CDS YP_982164.1 121604835 4686404 2052978..2053415 1 NC_008781.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2053415 clpS 4686404 clpS Polaromonas naphthalenivorans CJ2 ATP-dependent Clp protease adaptor protein ClpS YP_982164.1 2052978 D 365044 CDS YP_982165.1 121604836 4686405 2053496..2055832 1 NC_008781.1 KEGG: pol:Bpro_2940 ATPase AAA-2; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2055832 4686405 Pnap_1934 Polaromonas naphthalenivorans CJ2 ATP-dependent Clp protease ATP-binding protein ClpA YP_982165.1 2053496 D 365044 CDS YP_982166.1 121604837 4686104 2056001..2057449 1 NC_008781.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2057449 sbcB 4686104 sbcB Polaromonas naphthalenivorans CJ2 exonuclease I YP_982166.1 2056001 D 365044 CDS YP_982167.1 121604838 4686462 complement(2057497..2058675) 1 NC_008781.1 PFAM: TrkA-N domain protein; Saccharopine dehydrogenase; KEGG: mlo:mlr4469 hypothetical protein; saccharopine dehydrogenase 2058675 4686462 Pnap_1936 Polaromonas naphthalenivorans CJ2 saccharopine dehydrogenase YP_982167.1 2057497 R 365044 CDS YP_982168.1 121604839 4686470 2058816..2059247 1 NC_008781.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: mlo:mll4468 transcriptional regulator; AsnC family transcriptional regulator 2059247 4686470 Pnap_1937 Polaromonas naphthalenivorans CJ2 AsnC family transcriptional regulator YP_982168.1 2058816 D 365044 CDS YP_982169.1 121604840 4686484 complement(2059251..2059937) 1 NC_008781.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2938 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 2059937 4686484 Pnap_1938 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_982169.1 2059251 R 365044 CDS YP_982170.1 121604841 4686155 complement(2059939..2060889) 1 NC_008781.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_2937 rhodanese-like; rhodanese domain-containing protein 2060889 4686155 Pnap_1939 Polaromonas naphthalenivorans CJ2 rhodanese domain-containing protein YP_982170.1 2059939 R 365044 CDS YP_982171.1 121604842 4686522 2061041..2062342 1 NC_008781.1 TIGRFAM: esterase, PHB depolymerase family; PFAM: putative esterase; KEGG: bxe:Bxe_B2846 esterase, PHB depolymerase; PHB depolymerase family esterase 2062342 4686522 Pnap_1940 Polaromonas naphthalenivorans CJ2 PHB depolymerase family esterase YP_982171.1 2061041 D 365044 CDS YP_982172.1 121604843 4686165 complement(2062453..2062974) 1 NC_008781.1 KEGG: pol:Bpro_2538 hypothetical protein; hypothetical protein 2062974 4686165 Pnap_1941 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982172.1 2062453 R 365044 CDS YP_982173.1 121604844 4686173 2063159..2065495 1 NC_008781.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: pol:Bpro_2537 RNA binding S1; RNA-binding S1 domain-containing protein 2065495 4686173 Pnap_1942 Polaromonas naphthalenivorans CJ2 RNA-binding S1 domain-containing protein YP_982173.1 2063159 D 365044 CDS YP_982174.1 121604845 4686176 complement(2065635..2066771) 1 NC_008781.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2526 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2066771 4686176 Pnap_1943 Polaromonas naphthalenivorans CJ2 iron-containing alcohol dehydrogenase YP_982174.1 2065635 R 365044 CDS YP_982175.1 121604846 4686551 2066942..2067907 1 NC_008781.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pol:Bpro_2525 alpha/beta hydrolase fold-3; alpha/beta hydrolase domain-containing protein 2067907 4686551 Pnap_1944 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase domain-containing protein YP_982175.1 2066942 D 365044 CDS YP_982176.1 121604847 4687585 complement(2068883..2069836) 1 NC_008781.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: pol:Bpro_2521 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 2069836 4687585 Pnap_1946 Polaromonas naphthalenivorans CJ2 glycine cleavage T protein (aminomethyl transferase) YP_982176.1 2068883 R 365044 CDS YP_982177.1 121604848 4686599 2069925..2070932 1 NC_008781.1 PFAM: aminodeoxychorismate lyase; KEGG: pol:Bpro_2520 aminodeoxychorismate lyase; aminodeoxychorismate lyase 2070932 4686599 Pnap_1947 Polaromonas naphthalenivorans CJ2 aminodeoxychorismate lyase YP_982177.1 2069925 D 365044 CDS YP_982178.1 121604849 4686399 2070935..2071717 1 NC_008781.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2071717 tmk 4686399 tmk Polaromonas naphthalenivorans CJ2 thymidylate kinase YP_982178.1 2070935 D 365044 CDS YP_982179.1 121604850 4686638 2071714..2072835 1 NC_008781.1 KEGG: pol:Bpro_2518 DNA-directed DNA polymerase; DNA-directed DNA polymerase 2072835 4686638 Pnap_1949 Polaromonas naphthalenivorans CJ2 DNA-directed DNA polymerase YP_982179.1 2071714 D 365044 CDS YP_982180.1 121604851 4686633 2072859..2073239 1 NC_008781.1 PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ; type IV pilus assembly PilZ 2073239 4686633 Pnap_1950 Polaromonas naphthalenivorans CJ2 type IV pilus assembly PilZ YP_982180.1 2072859 D 365044 CDS YP_982181.1 121604852 4686651 2073271..2074068 1 NC_008781.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pol:Bpro_2516 TatD-related deoxyribonuclease; TatD family hydrolase 2074068 4686651 Pnap_1951 Polaromonas naphthalenivorans CJ2 TatD family hydrolase YP_982181.1 2073271 D 365044 CDS YP_982182.1 121604853 4686670 2074065..2074736 1 NC_008781.1 PFAM: Ankyrin; KEGG: pol:Bpro_2515 ankyrin; ankyrin 2074736 4686670 Pnap_1952 Polaromonas naphthalenivorans CJ2 ankyrin YP_982182.1 2074065 D 365044 CDS YP_982183.1 121604854 4686652 complement(2074750..2076126) 1 NC_008781.1 KEGG: rfr:Rfer_4122 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 2076126 4686652 Pnap_1953 Polaromonas naphthalenivorans CJ2 PAS/PAC sensor signal transduction histidine kinase YP_982183.1 2074750 R 365044 CDS YP_982184.1 121604855 4686672 complement(2076136..2077593) 1 NC_008781.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rfr:Rfer_4121 hydrogen:quinone oxidoreductase; nickel-dependent hydrogenase large subunit 2077593 4686672 Pnap_1954 Polaromonas naphthalenivorans CJ2 nickel-dependent hydrogenase large subunit YP_982184.1 2076136 R 365044 CDS YP_982185.1 121604856 4687278 complement(2077590..2078600) 1 NC_008781.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rfr:Rfer_4120 uptake hydrogenase accessory protein HupU; NADH ubiquinone oxidoreductase, 20 kDa subunit 2078600 4687278 Pnap_1955 Polaromonas naphthalenivorans CJ2 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_982185.1 2077590 R 365044 CDS YP_982186.1 121604857 4687044 complement(2078603..2080063) 1 NC_008781.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_3962 helix-turn-helix, fis-type; Fis family two component sigma-54 specific transcriptional regulator 2080063 4687044 Pnap_1956 Polaromonas naphthalenivorans CJ2 Fis family two component sigma-54 specific transcriptional regulator YP_982186.1 2078603 R 365044 CDS YP_982187.1 121604858 4687319 complement(2080060..2081868) 1 NC_008781.1 PFAM: Enoyl-CoA hydratase/isomerase; formyl transferase domain protein; KEGG: rme:Rmet_1541 formyl transferase-like protein; formyl transferase domain-containing protein 2081868 4687319 Pnap_1957 Polaromonas naphthalenivorans CJ2 formyl transferase domain-containing protein YP_982187.1 2080060 R 365044 CDS YP_982188.1 121604859 4687326 complement(2081865..2082398) 1 NC_008781.1 hypothetical protein 2082398 4687326 Pnap_1958 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982188.1 2081865 R 365044 CDS YP_982189.1 121604860 4687167 complement(2082421..2083485) 1 NC_008781.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rme:Rmet_1281 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2083485 4687167 Pnap_1959 Polaromonas naphthalenivorans CJ2 hydrogenase expression/formation protein HypE YP_982189.1 2082421 R 365044 CDS YP_982190.1 121604861 4687348 complement(2083482..2084627) 1 NC_008781.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rme:Rmet_1282 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 2084627 4687348 Pnap_1960 Polaromonas naphthalenivorans CJ2 hydrogenase expression/formation protein HypD YP_982190.1 2083482 R 365044 CDS YP_982191.1 121604862 4687181 complement(2084624..2084881) 1 NC_008781.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rme:Rmet_1283 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 2084881 4687181 Pnap_1961 Polaromonas naphthalenivorans CJ2 hydrogenase assembly chaperone HypC/HupF YP_982191.1 2084624 R 365044 CDS YP_982192.1 121604863 4686616 complement(2084872..2086089) 1 NC_008781.1 KEGG: rme:Rmet_1284 hydrogenase maturation protein HypF; hydrogenase maturation protein HypF 2086089 4686616 Pnap_1962 Polaromonas naphthalenivorans CJ2 hydrogenase maturation protein HypF YP_982192.1 2084872 R 365044 CDS YP_982193.1 121604864 4687201 complement(2086095..2087081) 1 NC_008781.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: rme:Rmet_1285 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2087081 4687201 Pnap_1963 Polaromonas naphthalenivorans CJ2 hydrogenase nickel incorporation protein HypB YP_982193.1 2086095 R 365044 CDS YP_982194.1 121604865 4687413 complement(2087094..2087441) 1 NC_008781.1 PFAM: hydrogenase expression/synthesis, HypA; KEGG: rme:Rmet_1286 hydrogenase nickel insertion protein HypA; hydrogenase expression/synthesis, HypA 2087441 4687413 Pnap_1964 Polaromonas naphthalenivorans CJ2 hydrogenase expression/synthesis, HypA YP_982194.1 2087094 R 365044 CDS YP_982195.1 121604866 4687391 complement(2087434..2088606) 1 NC_008781.1 KEGG: rme:Rmet_1287 hypothetical protein; hypothetical protein 2088606 4687391 Pnap_1965 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982195.1 2087434 R 365044 CDS YP_982196.1 121604867 4687188 complement(2088599..2089141) 1 NC_008781.1 KEGG: rme:Rmet_1288 HupJ, contains rubredoxin domain; hypothetical protein 2089141 4687188 Pnap_1966 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982196.1 2088599 R 365044 CDS YP_982197.1 121604868 4687435 complement(2089145..2089387) 1 NC_008781.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rme:Rmet_1289 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 2089387 4687435 Pnap_1967 Polaromonas naphthalenivorans CJ2 rubredoxin-type Fe(Cys)4 protein YP_982197.1 2089145 R 365044 CDS YP_982198.1 121604869 4687184 complement(2089384..2090250) 1 NC_008781.1 PFAM: HupH hydrogenase expression protein; KEGG: rme:Rmet_1290 HupH hydrogenase expression protein; HupH hydrogenase expression protein 2090250 4687184 Pnap_1968 Polaromonas naphthalenivorans CJ2 HupH hydrogenase expression protein YP_982198.1 2089384 R 365044 CDS YP_982199.1 121604870 4687441 complement(2090268..2090777) 1 NC_008781.1 PFAM: hydrogenase-1 expression HyaE; KEGG: rme:Rmet_1291 hydrogenase-1 expression HyaE; hydrogenase-1 expression HyaE 2090777 4687441 Pnap_1969 Polaromonas naphthalenivorans CJ2 hydrogenase-1 expression HyaE YP_982199.1 2090268 R 365044 CDS YP_982200.1 121604871 4687445 complement(2090800..2091126) 1 NC_008781.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rme:Rmet_1292 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 2091126 4687445 Pnap_1970 Polaromonas naphthalenivorans CJ2 hydrogenase assembly chaperone HypC/HupF YP_982200.1 2090800 R 365044 CDS YP_982201.1 121604872 4687448 complement(2091134..2091805) 1 NC_008781.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52, hydrogen uptake protein; KEGG: rme:Rmet_1293 hydrogenase expression/formation protein; hydrogenase expression/formation protein 2091805 4687448 Pnap_1971 Polaromonas naphthalenivorans CJ2 hydrogenase expression/formation protein YP_982201.1 2091134 R 365044 CDS YP_982202.1 121604873 4687224 complement(2091892..2092632) 1 NC_008781.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: rme:Rmet_1295 nickel-dependent hydrogenase b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 2092632 4687224 Pnap_1972 Polaromonas naphthalenivorans CJ2 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_982202.1 2091892 R 365044 CDS YP_982203.1 121604874 4687468 complement(2092648..2093238) 1 NC_008781.1 PFAM: HupE/UreJ protein; KEGG: rme:Rmet_1296 HupE/UreJ protein; HupE/UreJ protein 2093238 4687468 Pnap_1973 Polaromonas naphthalenivorans CJ2 HupE/UreJ protein YP_982203.1 2092648 R 365044 CDS YP_982204.1 121604875 4687192 complement(2093280..2095136) 1 NC_008781.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: rme:Rmet_1297 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit 2095136 4687192 Pnap_1974 Polaromonas naphthalenivorans CJ2 nickel-dependent hydrogenase large subunit YP_982204.1 2093280 R 365044 CDS YP_982205.1 121604876 4687491 complement(2095169..2096263) 1 NC_008781.1 KEGG: rme:Rmet_1298 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA 2096263 4687491 Pnap_1975 Polaromonas naphthalenivorans CJ2 hydrogenase (NiFe) small subunit HydA YP_982205.1 2095169 R 365044 CDS YP_982206.1 121604877 4687960 complement(2096724..2099024) 1 NC_008781.1 PFAM: von Willebrand factor, type A; KEGG: tbd:Tbd_2636 rubisco activation protein CbbO; von Willebrand factor type A domain-containing protein 2099024 4687960 Pnap_1976 Polaromonas naphthalenivorans CJ2 von Willebrand factor type A domain-containing protein YP_982206.1 2096724 R 365044 CDS YP_982207.1 121604878 4687494 complement(2099036..2099833) 1 NC_008781.1 PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: tbd:Tbd_2637 rubisco activation protein CbbQ; CbbQ/NirQ/NorQ C-terminal domain-containing protein 2099833 4687494 Pnap_1977 Polaromonas naphthalenivorans CJ2 CbbQ/NirQ/NorQ C-terminal domain-containing protein YP_982207.1 2099036 R 365044 CDS YP_982208.1 121604879 4688038 complement(2099886..2101265) 1 NC_008781.1 catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase 2101265 4688038 Pnap_1978 Polaromonas naphthalenivorans CJ2 ribulose bisphosphate carboxylase YP_982208.1 2099886 R 365044 CDS YP_982209.1 121604880 4687738 complement(2101392..2102309) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1394 transcriptional regulator, LysR family; LysR family transcriptional regulator 2102309 4687738 Pnap_1979 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_982209.1 2101392 R 365044 CDS YP_982210.1 121604881 4688088 2102443..2103204 1 NC_008781.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B2478 HAD-superfamily hydrolase, subfamily IA, variant3; HAD family hydrolase 2103204 4688088 Pnap_1980 Polaromonas naphthalenivorans CJ2 HAD family hydrolase YP_982210.1 2102443 D 365044 CDS YP_982211.1 121604882 4687764 2103214..2103924 1 NC_008781.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: bbr:BB4624 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 2103924 4687764 Pnap_1981 Polaromonas naphthalenivorans CJ2 ribulose-phosphate 3-epimerase YP_982211.1 2103214 D 365044 CDS YP_982212.1 121604883 4688089 2103968..2105062 1 NC_008781.1 PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: rfr:Rfer_1393 inositol phosphatase/fructose-1,6-bisphosphatase; inositol phosphatase/fructose-1,6-bisphosphatase 2105062 4688089 Pnap_1982 Polaromonas naphthalenivorans CJ2 inositol phosphatase/fructose-1,6-bisphosphatase YP_982212.1 2103968 D 365044 CDS YP_982213.1 121604884 4688105 2105150..2106034 1 NC_008781.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: rfr:Rfer_1392 phosphoribulokinase; phosphoribulokinase 2106034 4688105 Pnap_1983 Polaromonas naphthalenivorans CJ2 phosphoribulokinase YP_982213.1 2105150 D 365044 CDS YP_982214.1 121604885 4688110 2106056..2108137 1 NC_008781.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: tbd:Tbd_0159 transketolase; transketolase 2108137 4688110 Pnap_1984 Polaromonas naphthalenivorans CJ2 transketolase YP_982214.1 2106056 D 365044 CDS YP_982215.1 121604886 4688106 2108151..2108822 1 NC_008781.1 TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rme:Rmet_1514 phosphoglycolate phosphatase; phosphoglycolate phosphatase 2108822 4688106 Pnap_1985 Polaromonas naphthalenivorans CJ2 phosphoglycolate phosphatase YP_982215.1 2108151 D 365044 CDS YP_982216.1 121604887 4688157 2108893..2109909 1 NC_008781.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: pol:Bpro_4826 glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase 2109909 4688157 Pnap_1986 Polaromonas naphthalenivorans CJ2 glyceraldehyde-3-phosphate dehydrogenase YP_982216.1 2108893 D 365044 CDS YP_982217.1 121604888 4688160 2109906..2111108 1 NC_008781.1 PFAM: phosphoglycerate kinase; KEGG: pol:Bpro_4635 phosphoglycerate kinase; phosphoglycerate kinase 2111108 4688160 Pnap_1987 Polaromonas naphthalenivorans CJ2 phosphoglycerate kinase YP_982217.1 2109906 D 365044 CDS YP_982218.1 121604889 4687476 2111190..2112206 1 NC_008781.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 2112206 4687476 Pnap_1988 Polaromonas naphthalenivorans CJ2 fructose-1,6-bisphosphate aldolase YP_982218.1 2111190 D 365044 CDS YP_982219.1 121604890 4688194 complement(2112300..2113694) 1 NC_008781.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_C0670 putative transposase; integrase catalytic subunit 2113694 4688194 Pnap_1989 Polaromonas naphthalenivorans CJ2 integrase catalytic subunit YP_982219.1 2112300 R 365044 CDS YP_982220.1 121604891 4688217 complement(2113858..2114871) 1 NC_008781.1 KEGG: rfr:Rfer_2260 hypothetical protein; hypothetical protein 2114871 4688217 Pnap_1990 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982220.1 2113858 R 365044 CDS YP_982221.1 121604892 4688209 2114995..2116071 1 NC_008781.1 PFAM: phage integrase family protein; KEGG: rfr:Rfer_2261 phage integrase; phage integrase family protein 2116071 4688209 Pnap_1991 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_982221.1 2114995 D 365044 CDS YP_982222.1 121604893 4688710 2116186..2117121 1 NC_008781.1 KEGG: pol:Bpro_2457 putative signal peptide protein; putative signal peptide protein 2117121 4688710 Pnap_1992 Polaromonas naphthalenivorans CJ2 putative signal peptide protein YP_982222.1 2116186 D 365044 CDS YP_982223.1 121604894 4688229 2117340..2119529 1 NC_008781.1 PFAM: ThiJ/PfpI domain protein; Catalase domain protein; KEGG: pol:Bpro_2453 catalase; catalase 2119529 4688229 Pnap_1993 Polaromonas naphthalenivorans CJ2 catalase YP_982223.1 2117340 D 365044 CDS YP_982224.1 121604895 4688722 complement(2119577..2120503) 1 NC_008781.1 PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: pol:Bpro_2451 putative adenylate/guanylate cyclase; putative adenylate/guanylate cyclase 2120503 4688722 Pnap_1994 Polaromonas naphthalenivorans CJ2 putative adenylate/guanylate cyclase YP_982224.1 2119577 R 365044 CDS YP_982225.1 121604896 4688758 2120695..2121036 1 NC_008781.1 KEGG: pol:Bpro_2449 hypothetical protein; hypothetical protein 2121036 4688758 Pnap_1995 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982225.1 2120695 D 365044 CDS YP_982226.1 121604897 4688769 complement(2121074..2122033) 1 NC_008781.1 PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: pol:Bpro_2448 muramoyltetrapeptide carboxypeptidase; muramoyltetrapeptide carboxypeptidase 2122033 4688769 Pnap_1996 Polaromonas naphthalenivorans CJ2 muramoyltetrapeptide carboxypeptidase YP_982226.1 2121074 R 365044 CDS YP_982227.1 121604898 4688763 complement(2122054..2123289) 1 NC_008781.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pol:Bpro_2447 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase 2123289 4688763 Pnap_1997 Polaromonas naphthalenivorans CJ2 CMP/dCMP deaminase YP_982227.1 2122054 R 365044 CDS YP_982228.1 121604899 4688602 complement(2123355..2123603) 1 NC_008781.1 KEGG: pol:Bpro_2446 hypothetical protein; hypothetical protein 2123603 4688602 Pnap_1998 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982228.1 2123355 R 365044 CDS YP_982229.1 121604900 4688785 2123759..2124169 1 NC_008781.1 KEGG: rso:RS03692 hypothetical protein; hypothetical protein 2124169 4688785 Pnap_1999 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982229.1 2123759 D 365044 CDS YP_982230.1 121604901 4688797 complement(2124230..2125852) 1 NC_008781.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2125852 guaA 4688797 guaA Polaromonas naphthalenivorans CJ2 GMP synthase YP_982230.1 2124230 R 365044 CDS YP_982231.1 121604902 4688626 complement(2125933..2127402) 1 NC_008781.1 KEGG: pol:Bpro_2440 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 2127402 4688626 Pnap_2001 Polaromonas naphthalenivorans CJ2 inosine-5'-monophosphate dehydrogenase YP_982231.1 2125933 R 365044 CDS YP_982232.1 121604903 4688820 2127467..2128087 1 NC_008781.1 KEGG: pol:Bpro_2439 hypothetical protein; hypothetical protein 2128087 4688820 Pnap_2002 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982232.1 2127467 D 365044 CDS YP_982233.1 121604904 4688819 complement(2128109..2128474) 1 NC_008781.1 PFAM: protein of unknown function UPF0125; KEGG: pol:Bpro_2438 protein of unknown function UPF0125; hypothetical protein 2128474 4688819 Pnap_2003 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982233.1 2128109 R 365044 CDS YP_982234.1 121604905 4688620 complement(2128461..2128907) 1 NC_008781.1 PFAM: cyclase/dehydrase; KEGG: pol:Bpro_2437 cyclase/dehydrase; cyclase/dehydrase 2128907 4688620 Pnap_2004 Polaromonas naphthalenivorans CJ2 cyclase/dehydrase YP_982234.1 2128461 R 365044 CDS YP_982235.1 121604906 4688854 2128979..2129536 1 NC_008781.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2129536 smpB 4688854 smpB Polaromonas naphthalenivorans CJ2 SsrA-binding protein YP_982235.1 2128979 D 365044 CDS YP_982236.1 121604907 4688855 complement(2129568..2130695) 1 NC_008781.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase 2130695 4688855 Pnap_2006 Polaromonas naphthalenivorans CJ2 3-hydroxyisobutyryl-CoA hydrolase YP_982236.1 2129568 R 365044 CDS YP_982237.1 121604908 4688871 complement(2130692..2131567) 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_2430 protein of unknown function DUF6, transmembrane; hypothetical protein 2131567 4688871 Pnap_2007 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982237.1 2130692 R 365044 CDS YP_982238.1 121604909 4688872 complement(2131667..2133490) 1 NC_008781.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: rfr:Rfer_2137 GTP-binding protein TypA; GTP-binding protein TypA 2133490 4688872 Pnap_2008 Polaromonas naphthalenivorans CJ2 GTP-binding protein TypA YP_982238.1 2131667 R 365044 CDS YP_982239.1 121604910 4688897 complement(2133526..2134569) 1 NC_008781.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 2134569 truB 4688897 truB Polaromonas naphthalenivorans CJ2 tRNA pseudouridine synthase B YP_982239.1 2133526 R 365044 CDS YP_982240.1 121604911 4688184 complement(2134657..2135025) 1 NC_008781.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 2135025 rbfA 4688184 rbfA Polaromonas naphthalenivorans CJ2 ribosome-binding factor A YP_982240.1 2134657 R 365044 CDS YP_982241.1 121604912 4688672 complement(2135105..2138083) 1 NC_008781.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 2138083 infB 4688672 infB Polaromonas naphthalenivorans CJ2 translation initiation factor IF-2 YP_982241.1 2135105 R 365044 CDS YP_982242.1 121604913 4689359 complement(2138112..2139632) 1 NC_008781.1 KEGG: pol:Bpro_2425 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH, type 1, domain protein; NusA N-terminal domain protein; SMART: KH domain protein; NusA antitermination factor 2139632 4689359 Pnap_2012 Polaromonas naphthalenivorans CJ2 NusA antitermination factor YP_982242.1 2138112 R 365044 CDS YP_982243.1 121604914 4688678 complement(2139655..2140263) 1 NC_008781.1 PFAM: protein of unknown function DUF150; KEGG: pol:Bpro_2424 protein of unknown function DUF150; hypothetical protein 2140263 4688678 Pnap_2013 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982243.1 2139655 R 365044 CDS YP_982244.1 121604915 4689385 complement(2140465..2142069) 1 NC_008781.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2423 ABC transporter related; ABC transporter-like protein 2142069 4689385 Pnap_2014 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982244.1 2140465 R 365044 CDS YP_982245.1 121604916 4689394 complement(2142066..2143121) 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2422 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2143121 4689394 Pnap_2015 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_982245.1 2142066 R 365044 CDS YP_982246.1 121604917 4689097 complement(2143124..2144158) 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2421 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2144158 4689097 Pnap_2016 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_982246.1 2143124 R 365044 CDS YP_982247.1 121604918 4689397 complement(2144171..2145985) 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_2420 extracellular solute-binding protein, family 5; extracellular solute-binding protein 2145985 4689397 Pnap_2017 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_982247.1 2144171 R 365044 CDS YP_982248.1 121604919 4689162 2146098..2146895 1 NC_008781.1 KEGG: pol:Bpro_2419 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2146895 4689162 Pnap_2018 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_982248.1 2146098 D 365044 CDS YP_982249.1 121604920 4689180 2146979..2147866 1 NC_008781.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 2147866 4689180 Pnap_2019 Polaromonas naphthalenivorans CJ2 DNA ligase YP_982249.1 2146979 D 365044 CDS YP_982250.1 121604921 4689434 complement(2147972..2150305) 1 NC_008781.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pol:Bpro_2415 lysine decarboxylase; lysine decarboxylase 2150305 4689434 Pnap_2020 Polaromonas naphthalenivorans CJ2 lysine decarboxylase YP_982250.1 2147972 R 365044 CDS YP_982251.1 121604922 4689196 2150579..2151007 1 NC_008781.1 PFAM: protein of unknown function DUF107; KEGG: pol:Bpro_2414 protein of unknown function DUF107; hypothetical protein 2151007 4689196 Pnap_2021 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982251.1 2150579 D 365044 CDS YP_982252.1 121604923 4689526 2151078..2151989 1 NC_008781.1 PFAM: band 7 protein; KEGG: pol:Bpro_2413 band 7 protein; hypothetical protein 2151989 4689526 Pnap_2022 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982252.1 2151078 D 365044 CDS YP_982253.1 121604924 4689543 2152025..2152399 1 NC_008781.1 KEGG: pol:Bpro_2412 hypothetical protein; hypothetical protein 2152399 4689543 Pnap_2023 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982253.1 2152025 D 365044 CDS YP_982254.1 121604925 4687040 2152558..2152818 1 NC_008781.1 hypothetical protein 2152818 4687040 Pnap_2024 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982254.1 2152558 D 365044 CDS YP_982255.1 121604926 4689560 complement(2152815..2153819) 1 NC_008781.1 PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0302 aldo/keto reductase; aldo/keto reductase 2153819 4689560 Pnap_2025 Polaromonas naphthalenivorans CJ2 aldo/keto reductase YP_982255.1 2152815 R 365044 CDS YP_982256.1 121604927 4689276 complement(2153952..2154914) 1 NC_008781.1 PFAM: oxidoreductase domain protein; KEGG: rfr:Rfer_0329 oxidoreductase-like; oxidoreductase domain-containing protein 2154914 4689276 Pnap_2026 Polaromonas naphthalenivorans CJ2 oxidoreductase domain-containing protein YP_982256.1 2153952 R 365044 CDS YP_982257.1 121604928 4689564 complement(2154915..2155832) 1 NC_008781.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 2155832 4689564 Pnap_2027 Polaromonas naphthalenivorans CJ2 protocatechuate 4,5-dioxygenase subunit beta YP_982257.1 2154915 R 365044 CDS YP_982258.1 121604929 4689283 complement(2155833..2156285) 1 NC_008781.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 2156285 4689283 Pnap_2028 Polaromonas naphthalenivorans CJ2 protocatechuate 4,5-dioxygenase subunit alpha YP_982258.1 2155833 R 365044 CDS YP_982259.1 121604930 4689621 complement(2156289..2157227) 1 NC_008781.1 PFAM: amidohydrolase 2; KEGG: rfr:Rfer_0332 amidohydrolase 2; amidohydrolase 2 2157227 4689621 Pnap_2029 Polaromonas naphthalenivorans CJ2 amidohydrolase 2 YP_982259.1 2156289 R 365044 CDS YP_982260.1 121604931 4689634 complement(2157237..2158235) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065; hypothetical protein 2158235 4689634 Pnap_2030 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982260.1 2157237 R 365044 CDS YP_982261.1 121604932 4689288 complement(2158269..2158958) 1 NC_008781.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase; hypothetical protein 2158958 4689288 Pnap_2031 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982261.1 2158269 R 365044 CDS YP_982262.1 121604933 4689647 complement(2158962..2159990) 1 NC_008781.1 PFAM: amidohydrolase 2; KEGG: pol:Bpro_4320 amidohydrolase 2; amidohydrolase 2 2159990 4689647 Pnap_2032 Polaromonas naphthalenivorans CJ2 amidohydrolase 2 YP_982262.1 2158962 R 365044 CDS YP_982263.1 121604934 4689638 complement(2160000..2161169) 1 NC_008781.1 PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453; hypothetical protein 2161169 4689638 Pnap_2033 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982263.1 2160000 R 365044 CDS YP_982264.1 121604935 4690072 2161304..2162215 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0341 transcriptional regulator, LysR family; LysR family transcriptional regulator 2162215 4690072 Pnap_2034 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_982264.1 2161304 D 365044 CDS YP_982265.1 121604936 4690089 2162616..2163020 1 NC_008781.1 KEGG: dar:Daro_1481 hypothetical protein; hypothetical protein 2163020 4690089 Pnap_2035 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982265.1 2162616 D 365044 CDS YP_982266.1 121604937 4689553 2163047..2163877 1 NC_008781.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: dar:Daro_1477 molybdenum-binding protein, N-terminal:molybdenum-pterin binding protein; ModE family transcriptional regulator 2163877 4689553 Pnap_2036 Polaromonas naphthalenivorans CJ2 ModE family transcriptional regulator YP_982266.1 2163047 D 365044 CDS YP_982267.1 121604938 4690051 2163910..2164662 1 NC_008781.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: dar:Daro_1476 molybdenum ABC transporter, periplasmic binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 2164662 4690051 Pnap_2037 Polaromonas naphthalenivorans CJ2 molybdenum ABC transporter periplasmic molybdate-binding protein YP_982267.1 2163910 D 365044 CDS YP_982268.1 121604939 4690167 2164677..2165108 1 NC_008781.1 KEGG: rpc:RPC_4545 hypothetical protein; hypothetical protein 2165108 4690167 Pnap_2038 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982268.1 2164677 D 365044 CDS YP_982269.1 121604940 4690173 2165127..2165966 1 NC_008781.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: dar:Daro_1475 putative molybdenum utilization protein ModD; modD protein 2165966 4690173 Pnap_2039 Polaromonas naphthalenivorans CJ2 modD protein YP_982269.1 2165127 D 365044 CDS YP_982270.1 121604941 4689988 2166052..2166732 1 NC_008781.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1379 molybdenum ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit 2166732 4689988 Pnap_2040 Polaromonas naphthalenivorans CJ2 molybdate ABC transporter inner membrane subunit YP_982270.1 2166052 D 365044 CDS YP_982271.1 121604942 4688630 2166734..2167804 1 NC_008781.1 KEGG: mca:MCA1380 molybdenum ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 2167804 4688630 Pnap_2041 Polaromonas naphthalenivorans CJ2 molybdate ABC transporter ATPase YP_982271.1 2166734 D 365044 CDS YP_982272.1 121604943 4689884 complement(2167904..2168503) 1 NC_008781.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rfr:Rfer_1441 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein 2168503 4689884 Pnap_2042 Polaromonas naphthalenivorans CJ2 pyridoxamine 5'-phosphate oxidase-like protein YP_982272.1 2167904 R 365044 CDS YP_982273.1 121604944 4690025 complement(2168976..2170808) 1 NC_008781.1 PFAM: protein of unknown function DUF255; KEGG: tbd:Tbd_2727 hypothetical protein; hypothetical protein 2170808 4690025 Pnap_2043 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982273.1 2168976 R 365044 CDS YP_982274.1 121604945 4689975 complement(2171048..2171296) 1 NC_008781.1 KEGG: rfr:Rfer_3825 hypothetical protein; hypothetical protein 2171296 4689975 Pnap_2044 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982274.1 2171048 R 365044 CDS YP_982275.1 121604946 4689832 complement(2171388..2171699) 1 NC_008781.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: mca:MCA0586 Rieske 2Fe-2S family protein; Rieske (2Fe-2S) domain-containing protein 2171699 4689832 Pnap_2045 Polaromonas naphthalenivorans CJ2 Rieske (2Fe-2S) domain-containing protein YP_982275.1 2171388 R 365044 CDS YP_982276.1 121604947 4689915 complement(2171719..2173296) 1 NC_008781.1 KEGG: mca:MCA1608 hypothetical protein; hypothetical protein 2173296 4689915 Pnap_2046 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982276.1 2171719 R 365044 CDS YP_982277.1 121604948 4687037 complement(2173749..2174582) 1 NC_008781.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pol:Bpro_1988 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD-binding protein 2174582 4687037 Pnap_2047 Polaromonas naphthalenivorans CJ2 UBA/THIF-type NAD/FAD-binding protein YP_982277.1 2173749 R 365044 CDS YP_982278.1 121604949 4689798 complement(2174666..2175427) 1 NC_008781.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1986 tetratricopeptide TPR_2; hypothetical protein 2175427 4689798 Pnap_2048 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982278.1 2174666 R 365044 CDS YP_982279.1 121604950 4689738 complement(2175443..2175982) 1 NC_008781.1 TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1985 OmpA/MotB; OmpA domain-containing protein 2175982 4689738 Pnap_2049 Polaromonas naphthalenivorans CJ2 OmpA domain-containing protein YP_982279.1 2175443 R 365044 CDS YP_982280.1 121604951 4689778 complement(2176027..2177316) 1 NC_008781.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2177316 tolB 4689778 tolB Polaromonas naphthalenivorans CJ2 translocation protein TolB YP_982280.1 2176027 R 365044 CDS YP_982281.1 121604952 4689730 complement(2177331..2178173) 1 NC_008781.1 PFAM: glycosyl transferase, family 2; KEGG: hhe:HH0773 hypothetical protein; glycosyl transferase family protein 2178173 4689730 Pnap_2051 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_982281.1 2177331 R 365044 CDS YP_982282.1 121604953 4689707 complement(2178173..2178940) 1 NC_008781.1 PFAM: glycosyl transferase, family 2; KEGG: pol:Bpro_1982 glycosyl transferase, family 2; glycosyl transferase family protein 2178940 4689707 Pnap_2052 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_982282.1 2178173 R 365044 CDS YP_982283.1 121604954 4689305 2179137..2180354 1 NC_008781.1 PFAM: O-antigen polymerase; KEGG: pol:Bpro_1980 O-antigen polymerase; O-antigen polymerase 2180354 4689305 Pnap_2053 Polaromonas naphthalenivorans CJ2 O-antigen polymerase YP_982283.1 2179137 D 365044 CDS YP_982284.1 121604955 4689704 2180351..2182132 1 NC_008781.1 KEGG: pol:Bpro_1979 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 2182132 4689704 Pnap_2054 Polaromonas naphthalenivorans CJ2 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_982284.1 2180351 D 365044 CDS YP_982285.1 121604956 4689697 complement(2182134..2182733) 1 NC_008781.1 KEGG: pol:Bpro_2723 hypothetical protein; hypothetical protein 2182733 4689697 Pnap_2055 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982285.1 2182134 R 365044 CDS YP_982286.1 121604957 4689679 2183274..2184041 1 NC_008781.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2726 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 2184041 4689679 Pnap_2056 Polaromonas naphthalenivorans CJ2 polar amino acid ABC transporter inner membrane subunit YP_982286.1 2183274 D 365044 CDS YP_982287.1 121604958 4689994 2184019..2184750 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2727 ABC transporter related; ABC transporter-like protein 2184750 4689994 Pnap_2057 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982287.1 2184019 D 365044 CDS YP_982288.1 121604959 4689568 complement(2184867..2185079) 1 NC_008781.1 KEGG: pol:Bpro_2733 hypothetical protein; hypothetical protein 2185079 4689568 Pnap_2058 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982288.1 2184867 R 365044 CDS YP_982289.1 121604960 4689665 complement(2185082..2185444) 1 NC_008781.1 PFAM: translation initiation factor SUI1; KEGG: pol:Bpro_2734 translation initiation factor SUI1; translation initiation factor SUI1 2185444 4689665 Pnap_2059 Polaromonas naphthalenivorans CJ2 translation initiation factor SUI1 YP_982289.1 2185082 R 365044 CDS YP_982290.1 121604961 4689517 complement(2185487..2185918) 1 NC_008781.1 KEGG: pol:Bpro_1344 hypothetical protein; hypothetical protein 2185918 4689517 Pnap_2060 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982290.1 2185487 R 365044 CDS YP_982291.1 121604962 4689414 complement(2186115..2188547) 1 NC_008781.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pol:Bpro_2329 glycosyl transferase, family 51; glycosyl transferase family protein 2188547 4689414 Pnap_2061 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_982291.1 2186115 R 365044 CDS YP_982292.1 121604963 4689474 complement(2188620..2189198) 1 NC_008781.1 PFAM: protein of unknown function DUF937; KEGG: pcr:Pcryo_2016 hypothetical protein; hypothetical protein 2189198 4689474 Pnap_2062 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982292.1 2188620 R 365044 CDS YP_982293.1 121604964 4689390 2189265..2191829 1 NC_008781.1 KEGG: hypothetical protein; hypothetical protein 2191829 4689390 Pnap_2063 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982293.1 2189265 D 365044 CDS YP_982294.1 121604965 4689378 complement(2191953..2193182) 1 NC_008781.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pol:Bpro_2328 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2193182 4689378 Pnap_2064 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_982294.1 2191953 R 365044 CDS YP_982295.1 121604966 4689371 complement(2193229..2195289) 1 NC_008781.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pol:Bpro_2084 peptidoglycan glycosyltransferase; glycosyl transferase family protein 2195289 4689371 Pnap_2065 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_982295.1 2193229 R 365044 CDS YP_982296.1 121604967 4689772 2195568..2195780 1 NC_008781.1 hypothetical protein 2195780 4689772 Pnap_2066 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982296.1 2195568 D 365044 CDS YP_982297.1 121604968 4689770 complement(2195789..2196763) 1 NC_008781.1 PFAM: PfkB domain protein; KEGG: bcn:Bcen_6346 PfkB; ribokinase-like domain-containing protein 2196763 4689770 Pnap_2067 Polaromonas naphthalenivorans CJ2 ribokinase-like domain-containing protein YP_982297.1 2195789 R 365044 CDS YP_982298.1 121604969 4689885 complement(2196772..2198307) 1 NC_008781.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: bcn:Bcen_6467 altronate dehydratase; altronate dehydratase 2198307 4689885 Pnap_2068 Polaromonas naphthalenivorans CJ2 altronate dehydratase YP_982298.1 2196772 R 365044 CDS YP_982299.1 121604970 4689879 complement(2198348..2199496) 1 NC_008781.1 PFAM: Mannitol dehydrogenase, C-terminal domain; KEGG: atc:AGR_C_5101 altronate oxidoreductase; mannitol dehydrogenase domain-containing protein 2199496 4689879 Pnap_2069 Polaromonas naphthalenivorans CJ2 mannitol dehydrogenase domain-containing protein YP_982299.1 2198348 R 365044 CDS YP_982300.1 121604971 4689972 complement(2199502..2200512) 1 NC_008781.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bcn:Bcen_6469 alcohol dehydrogenase GroES-like; alcohol dehydrogenase 2200512 4689972 Pnap_2070 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_982300.1 2199502 R 365044 CDS YP_982301.1 121604972 4689878 complement(2200582..2201349) 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_1029 extracellular solute-binding protein, family 3; extracellular solute-binding protein 2201349 4689878 Pnap_2071 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_982301.1 2200582 R 365044 CDS YP_982302.1 121604973 4689858 complement(2201407..2202135) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3973 ABC transporter related; ABC transporter-like protein 2202135 4689858 Pnap_2072 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982302.1 2201407 R 365044 CDS YP_982303.1 121604974 4689845 complement(2202119..2202769) 1 NC_008781.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1031 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 2202769 4689845 Pnap_2073 Polaromonas naphthalenivorans CJ2 polar amino acid ABC transporter inner membrane subunit YP_982303.1 2202119 R 365044 CDS YP_982304.1 121604975 4689799 complement(2202782..2203465) 1 NC_008781.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1032 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 2203465 4689799 Pnap_2074 Polaromonas naphthalenivorans CJ2 polar amino acid ABC transporter inner membrane subunit YP_982304.1 2202782 R 365044 CDS YP_982305.1 121604976 4689951 2203710..2204477 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: atc:AGR_C_5113 hypothetical protein; GntR family transcriptional regulator 2204477 4689951 Pnap_2075 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_982305.1 2203710 D 365044 CDS YP_982306.1 121604977 4689970 complement(2204657..2205844) 1 NC_008781.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2746 aminotransferase, class I and II; GntR family transcriptional regulator 2205844 4689970 Pnap_2076 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_982306.1 2204657 R 365044 CDS YP_982307.1 121604978 4689942 2206425..2207804 1 NC_008781.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_5481 HNH endonuclease; HNH endonuclease 2207804 4689942 Pnap_2077 Polaromonas naphthalenivorans CJ2 HNH endonuclease YP_982307.1 2206425 D 365044 CDS YP_982308.1 121604979 4689672 2207801..2212558 1 NC_008781.1 PFAM: NAD-glutamate dehydrogenase; KEGG: rfr:Rfer_1509 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase 2212558 4689672 Pnap_2078 Polaromonas naphthalenivorans CJ2 NAD-glutamate dehydrogenase YP_982308.1 2207801 D 365044 CDS YP_982309.1 121604980 4689910 2212579..2213223 1 NC_008781.1 TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: pol:Bpro_2747 endonuclease III; endonuclease III 2213223 4689910 Pnap_2079 Polaromonas naphthalenivorans CJ2 endonuclease III YP_982309.1 2212579 D 365044 CDS YP_982310.1 121604981 4689898 2213352..2214290 1 NC_008781.1 PFAM: PfkB domain protein; KEGG: pol:Bpro_2756 PfkB; ribokinase-like domain-containing protein 2214290 4689898 Pnap_2080 Polaromonas naphthalenivorans CJ2 ribokinase-like domain-containing protein YP_982310.1 2213352 D 365044 CDS YP_982311.1 121604982 4689891 2214516..2216981 1 NC_008781.1 KEGG: pol:Bpro_2757 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing enzyme; pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; phosphoenolpyruvate synthase 2216981 4689891 Pnap_2081 Polaromonas naphthalenivorans CJ2 phosphoenolpyruvate synthase YP_982311.1 2214516 D 365044 CDS YP_982312.1 121604983 4689854 2216978..2217355 1 NC_008781.1 PFAM: CBS domain containing protein; KEGG: pol:Bpro_2758 putative signal-transduction protein with CBS domains; signal-transduction protein 2217355 4689854 Pnap_2082 Polaromonas naphthalenivorans CJ2 signal-transduction protein YP_982312.1 2216978 D 365044 CDS YP_982313.1 121604984 4689895 complement(2217363..2217839) 1 NC_008781.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 2217839 4689895 Pnap_2083 Polaromonas naphthalenivorans CJ2 putative transposase of insertion sequence ISRm10-1 YP_982313.1 2217363 R 365044 CDS YP_982314.1 121604985 4689841 complement(2217901..2218317) 1 NC_008781.1 KEGG: ana:alr1858 transposase; hypothetical protein 2218317 4689841 Pnap_2084 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982314.1 2217901 R 365044 CDS YP_982315.1 121604986 4689825 complement(2218691..2220379) 1 NC_008781.1 PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: gsu:GSU0716 hypothetical protein; peptidase C14, caspase catalytic subunit p20 2220379 4689825 Pnap_2085 Polaromonas naphthalenivorans CJ2 peptidase C14, caspase catalytic subunit p20 YP_982315.1 2218691 R 365044 CDS YP_982316.1 121604987 4689321 complement(2220408..2223599) 1 NC_008781.1 KEGG: mma:MM3064 hypothetical protein; hypothetical protein 2223599 4689321 Pnap_2086 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982316.1 2220408 R 365044 CDS YP_982317.1 121604988 4689344 complement(2223688..2226246) 1 NC_008781.1 KEGG: mma:MM3065 hypothetical protein; hypothetical protein 2226246 4689344 Pnap_2087 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982317.1 2223688 R 365044 CDS YP_982318.1 121604989 4689123 2226779..2227240 1 NC_008781.1 PFAM: UspA domain protein; KEGG: pol:Bpro_3368 UspA; UspA domain-containing protein 2227240 4689123 Pnap_2088 Polaromonas naphthalenivorans CJ2 UspA domain-containing protein YP_982318.1 2226779 D 365044 CDS YP_982319.1 121604990 4689337 2227230..2227520 1 NC_008781.1 KEGG: rfr:Rfer_3317 putative lipase; putative lipase 2227520 4689337 Pnap_2089 Polaromonas naphthalenivorans CJ2 putative lipase YP_982319.1 2227230 D 365044 CDS YP_982320.1 121604991 4689046 complement(2227577..2228383) 1 NC_008781.1 KEGG: rfr:Rfer_1542 hypothetical protein; hypothetical protein 2228383 4689046 Pnap_2090 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982320.1 2227577 R 365044 CDS YP_982321.1 121604992 4689091 2228535..2229446 1 NC_008781.1 PFAM: dienelactone hydrolase; KEGG: rfr:Rfer_3313 twin-arginine translocation pathway signal; carboxymethylenebutenolidase 2229446 4689091 Pnap_2091 Polaromonas naphthalenivorans CJ2 carboxymethylenebutenolidase YP_982321.1 2228535 D 365044 CDS YP_982322.1 121604993 4688996 2229525..2230631 1 NC_008781.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: bpm:BURPS1710b_3194 glycerophosphoryl diester phosphodiesterase family protein; glycerophosphoryl diester phosphodiesterase 2230631 4688996 Pnap_2092 Polaromonas naphthalenivorans CJ2 glycerophosphoryl diester phosphodiesterase YP_982322.1 2229525 D 365044 CDS YP_982323.1 121604994 4689001 2231037..2232458 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: reu:Reut_B3939 regulatory protein GntR, HTH:aminotransferase, class I and II; GntR family transcriptional regulator 2232458 4689001 Pnap_2093 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_982323.1 2231037 D 365044 CDS YP_982324.1 121604995 4688993 complement(2232468..2233757) 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I; class I cytochrome c 2233757 4688993 Pnap_2094 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_982324.1 2232468 R 365044 CDS YP_982325.1 121604996 4689917 complement(2233754..2234608) 1 NC_008781.1 KEGG: pol:Bpro_3448 putative cytochrome c; putative cytochrome c 2234608 4689917 Pnap_2095 Polaromonas naphthalenivorans CJ2 putative cytochrome c YP_982325.1 2233754 R 365044 CDS YP_982326.1 121604997 4688979 complement(2234605..2236053) 1 NC_008781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 2236053 4688979 Pnap_2096 Polaromonas naphthalenivorans CJ2 4Fe-4S ferredoxin YP_982326.1 2234605 R 365044 CDS YP_982327.1 121604998 4688971 complement(2236088..2237056) 1 NC_008781.1 hypothetical protein 2237056 4688971 Pnap_2097 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982327.1 2236088 R 365044 CDS YP_982328.1 121604999 4688928 complement(2237053..2238345) 1 NC_008781.1 PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_A1414 hypothetical protein; FAD dependent oxidoreductase 2238345 4688928 Pnap_2098 Polaromonas naphthalenivorans CJ2 FAD dependent oxidoreductase YP_982328.1 2237053 R 365044 CDS YP_982329.1 121605000 4687741 complement(2238402..2238689) 1 NC_008781.1 KEGG: bxe:Bxe_A1413 hypothetical protein; hypothetical protein 2238689 4687741 Pnap_2099 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982329.1 2238402 R 365044 CDS YP_982330.1 121605001 4688385 complement(2238733..2239935) 1 NC_008781.1 PFAM: glycosyl transferase, group 1; KEGG: bxe:Bxe_A1412 putative glycosyl transferases group 1; group 1 glycosyl transferase 2239935 4688385 Pnap_2100 Polaromonas naphthalenivorans CJ2 group 1 glycosyl transferase YP_982330.1 2238733 R 365044 CDS YP_982331.1 121605002 4688400 complement(2239928..2240953) 1 NC_008781.1 PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bxe:Bxe_A1411 putative thiamine-monophosphate kinase; AIR synthase-like protein 2240953 4688400 Pnap_2101 Polaromonas naphthalenivorans CJ2 AIR synthase-like protein YP_982331.1 2239928 R 365044 CDS YP_982332.1 121605003 4688775 complement(2240950..2241507) 1 NC_008781.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bxe:Bxe_A1410 hypothetical protein; N-acetyltransferase GCN5 2241507 4688775 Pnap_2102 Polaromonas naphthalenivorans CJ2 N-acetyltransferase GCN5 YP_982332.1 2240950 R 365044 CDS YP_982333.1 121605004 4688460 complement(2241520..2242608) 1 NC_008781.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bxe:Bxe_A1409 hypothetical protein; radical SAM domain-containing protein 2242608 4688460 Pnap_2103 Polaromonas naphthalenivorans CJ2 radical SAM domain-containing protein YP_982333.1 2241520 R 365044 CDS YP_982334.1 121605005 4688746 complement(2242571..2243632) 1 NC_008781.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bxe:Bxe_A1408 putative nitrilase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2243632 4688746 Pnap_2104 Polaromonas naphthalenivorans CJ2 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_982334.1 2242571 R 365044 CDS YP_982335.1 121605006 4688455 complement(2243647..2244129) 1 NC_008781.1 KEGG: bxe:Bxe_A1407 hypothetical protein; hypothetical protein 2244129 4688455 Pnap_2105 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982335.1 2243647 R 365044 CDS YP_982336.1 121605007 4689015 2244484..2245872 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: bxe:Bxe_A1406 transcriptional regulator, GntR family; GntR family transcriptional regulator 2245872 4689015 Pnap_2106 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_982336.1 2244484 D 365044 CDS YP_982337.1 121605008 4688716 complement(2246034..2247215) 1 NC_008781.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: bur:Bcep18194_B2976 benzoate membrane transport protein; benzoate transporter 2247215 4688716 Pnap_2107 Polaromonas naphthalenivorans CJ2 benzoate transporter YP_982337.1 2246034 R 365044 CDS YP_982338.1 121605009 4689067 complement(2247411..2248775) 1 NC_008781.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_B3938 general substrate transporter:major facilitator superfamily MFS_1; major facilitator superfamily transporter 2248775 4689067 Pnap_2108 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_982338.1 2247411 R 365044 CDS YP_982339.1 121605010 4689019 complement(2248850..2249629) 1 NC_008781.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase 2249629 benD 4689019 benD Polaromonas naphthalenivorans CJ2 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase YP_982339.1 2248850 R 365044 CDS YP_982340.1 121605011 4689084 complement(2249700..2250707) 1 NC_008781.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: pfl:PFL_3856 ring-hydroxylating dioxygenase, ferredoxin reductase subunit; FadD27 protein 2250707 4689084 Pnap_2110 Polaromonas naphthalenivorans CJ2 FadD27 protein YP_982340.1 2249700 R 365044 CDS YP_982341.1 121605012 4689071 complement(2250727..2251215) 1 NC_008781.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: cgb:cg2638 benzoate dioxygenase small subunit; 2-chlorobenzoate 1,2-dioxygenase 2251215 4689071 Pnap_2111 Polaromonas naphthalenivorans CJ2 2-chlorobenzoate 1,2-dioxygenase YP_982341.1 2250727 R 365044 CDS YP_982342.1 121605013 4689131 complement(2251226..2252617) 1 NC_008781.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: rme:Rmet_4882 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 2252617 4689131 Pnap_2112 Polaromonas naphthalenivorans CJ2 Rieske (2Fe-2S) domain-containing protein YP_982342.1 2251226 R 365044 CDS YP_982343.1 121605014 4689025 2252638..2252982 1 NC_008781.1 hypothetical protein 2252982 4689025 Pnap_2113 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982343.1 2252638 D 365044 CDS YP_982344.1 121605015 4688399 2253010..2253951 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2394 transcriptional regulator, LysR family; LysR family transcriptional regulator 2253951 4688399 Pnap_2114 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_982344.1 2253010 D 365044 CDS YP_982345.1 121605016 4688409 complement(2253952..2254410) 1 NC_008781.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: bxe:Bxe_C0584 hypothetical protein; hemerythrin-like metal-binding protein 2254410 4688409 Pnap_2115 Polaromonas naphthalenivorans CJ2 hemerythrin-like metal-binding protein YP_982345.1 2253952 R 365044 CDS YP_982346.1 121605017 4688420 complement(2254519..2255433) 1 NC_008781.1 PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; KEGG: rme:Rmet_1781 catechol 1,2-dioxygenase; intradiol ring-cleavage dioxygenase 2255433 4688420 Pnap_2116 Polaromonas naphthalenivorans CJ2 intradiol ring-cleavage dioxygenase YP_982346.1 2254519 R 365044 CDS YP_982347.1 121605018 4688345 complement(2255498..2256481) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4876 uncharacterized protein UPF0065; hypothetical protein 2256481 4688345 Pnap_2117 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982347.1 2255498 R 365044 CDS YP_982348.1 121605019 4688493 complement(2256523..2256801) 1 NC_008781.1 PFAM: Muconolactone delta-isomerase; KEGG: rme:Rmet_4877 muconolactone delta-isomerase; muconolactone delta-isomerase 2256801 4688493 Pnap_2118 Polaromonas naphthalenivorans CJ2 muconolactone delta-isomerase YP_982348.1 2256523 R 365044 CDS YP_982349.1 121605020 4688394 complement(2256813..2257997) 1 NC_008781.1 KEGG: rme:Rmet_4878 mandelate racemase/muconate lactonizing enzyme; TIGRFAM: muconate and chloromuconate cycloisomerases; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; muconate and chloromuconate cycloisomerase 2257997 4688394 Pnap_2119 Polaromonas naphthalenivorans CJ2 muconate and chloromuconate cycloisomerase YP_982349.1 2256813 R 365044 CDS YP_982350.1 121605021 4688458 2258122..2259000 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2482 transcriptional regulator, LysR family; LysR family transcriptional regulator 2259000 4688458 Pnap_2120 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_982350.1 2258122 D 365044 CDS YP_982351.1 121605022 4688320 complement(2259016..2259786) 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1857 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2259786 4688320 Pnap_2121 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold protein YP_982351.1 2259016 R 365044 CDS YP_982352.1 121605023 4688313 complement(2259895..2260404) 1 NC_008781.1 PFAM: regulatory protein, MarR; KEGG: reu:Reut_B3914 regulatory protein, MarR; MarR family transcriptional regulator 2260404 4688313 Pnap_2122 Polaromonas naphthalenivorans CJ2 MarR family transcriptional regulator YP_982352.1 2259895 R 365044 CDS YP_982353.1 121605024 4688314 2260531..2261298 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rpd:RPD_1541 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2261298 4688314 Pnap_2123 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_982353.1 2260531 D 365044 CDS YP_982354.1 121605025 4688299 2261463..2262245 1 NC_008781.1 TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_1542 naphthoate synthase; naphthoate synthase 2262245 4688299 Pnap_2124 Polaromonas naphthalenivorans CJ2 naphthoate synthase YP_982354.1 2261463 D 365044 CDS YP_982355.1 121605026 4688294 2262263..2263420 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_1543 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 2263420 4688294 Pnap_2125 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_982355.1 2262263 D 365044 CDS YP_982356.1 121605027 4688988 2263454..2265097 1 NC_008781.1 AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate; cyclohexanecarboxylate-CoA ligase 2265097 4688988 Pnap_2126 Polaromonas naphthalenivorans CJ2 cyclohexanecarboxylate-CoA ligase YP_982356.1 2263454 D 365044 CDS YP_982357.1 121605028 4688283 2265137..2266135 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4609 uncharacterized protein UPF0065; hypothetical protein 2266135 4688283 Pnap_2127 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982357.1 2265137 D 365044 CDS YP_982358.1 121605029 4688258 2266235..2267014 1 NC_008781.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA0650 cyclohex-1-ene-1-carboxyl-CoA hydratase; enoyl-CoA hydratase/isomerase 2267014 4688258 Pnap_2128 Polaromonas naphthalenivorans CJ2 enoyl-CoA hydratase/isomerase YP_982358.1 2266235 D 365044 CDS YP_982359.1 121605030 4688282 2267042..2268202 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rme:Rmet_5908 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase 2268202 4688282 Pnap_2129 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase YP_982359.1 2267042 D 365044 CDS YP_982360.1 121605031 4688249 2268251..2269435 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: eba:ebA2993 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2269435 4688249 Pnap_2130 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_982360.1 2268251 D 365044 CDS YP_982361.1 121605032 4688221 2269455..2270204 1 NC_008781.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: pol:Bpro_3143 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 2270204 4688221 Pnap_2131 Polaromonas naphthalenivorans CJ2 electron transfer flavoprotein subunit beta YP_982361.1 2269455 D 365044 CDS YP_982362.1 121605033 4687880 2270235..2271167 1 NC_008781.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: pol:Bpro_3142 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 2271167 4687880 Pnap_2132 Polaromonas naphthalenivorans CJ2 electron transfer flavoprotein subunit alpha YP_982362.1 2270235 D 365044 CDS YP_982363.1 121605034 4687893 2271368..2273371 1 NC_008781.1 TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK1485 acetoacetyl-CoA synthetase; acetoacetyl-CoA synthase 2273371 4687893 Pnap_2133 Polaromonas naphthalenivorans CJ2 acetoacetyl-CoA synthase YP_982363.1 2271368 D 365044 CDS YP_982364.1 121605035 4687794 2273368..2274405 1 NC_008781.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpd:RPD_1539 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 2274405 4687794 Pnap_2134 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_982364.1 2273368 D 365044 CDS YP_982365.1 121605036 4688051 2274412..2276472 1 NC_008781.1 PFAM: Enoyl-CoA hydratase/isomerase; FAD dependent oxidoreductase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: reu:Reut_B3873 enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 2276472 4688051 Pnap_2135 Polaromonas naphthalenivorans CJ2 3-hydroxyacyl-CoA dehydrogenase YP_982365.1 2274412 D 365044 CDS YP_982366.1 121605037 4688057 2276503..2277708 1 NC_008781.1 KEGG: pol:Bpro_1231 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase 2277708 4688057 Pnap_2136 Polaromonas naphthalenivorans CJ2 beta-ketoadipyl CoA thiolase YP_982366.1 2276503 D 365044 CDS YP_982367.1 121605038 4688218 complement(2278333..2279328) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0579 uncharacterized protein UPF0065; hypothetical protein 2279328 4688218 Pnap_2138 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982367.1 2278333 R 365044 CDS YP_982368.1 121605039 4688040 complement(2279372..2280244) 1 NC_008781.1 PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase; HpcH/HpaI aldolase 2280244 4688040 Pnap_2139 Polaromonas naphthalenivorans CJ2 HpcH/HpaI aldolase YP_982368.1 2279372 R 365044 CDS YP_982369.1 121605040 4687642 complement(2280237..2281622) 1 NC_008781.1 PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD; MmgE/PrpD family protein 2281622 4687642 Pnap_2140 Polaromonas naphthalenivorans CJ2 MmgE/PrpD family protein YP_982369.1 2280237 R 365044 CDS YP_982370.1 121605041 4687957 complement(2281725..2282906) 1 NC_008781.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0582 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2282906 4687957 Pnap_2141 Polaromonas naphthalenivorans CJ2 L-carnitine dehydratase/bile acid-inducible protein F YP_982370.1 2281725 R 365044 CDS YP_982371.1 121605042 4688328 complement(2282922..2284085) 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0583 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 2284085 4688328 Pnap_2142 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_982371.1 2282922 R 365044 CDS YP_982372.1 121605043 4687948 complement(2284112..2285014) 1 NC_008781.1 KEGG: pol:Bpro_0584 hypothetical protein; hypothetical protein 2285014 4687948 Pnap_2143 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982372.1 2284112 R 365044 CDS YP_982373.1 121605044 4688333 2285137..2286045 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0586 transcriptional regulator, LysR family; LysR family transcriptional regulator 2286045 4688333 Pnap_2144 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_982373.1 2285137 D 365044 CDS YP_982374.1 121605045 4688508 2286227..2286541 1 NC_008781.1 KEGG: pol:Bpro_2759 hypothetical protein; hypothetical protein 2286541 4688508 Pnap_2145 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982374.1 2286227 D 365044 CDS YP_982375.1 121605046 4688289 complement(2286558..2288015) 1 NC_008781.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2760 cobyric acid synthase CobQ; cobyric acid synthase CobQ 2288015 4688289 Pnap_2146 Polaromonas naphthalenivorans CJ2 cobyric acid synthase CobQ YP_982375.1 2286558 R 365044 CDS YP_982376.1 121605047 4688522 complement(2288012..2289055) 1 NC_008781.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2761 aminotransferase, class I and II; class I/II aminotransferase 2289055 4688522 Pnap_2147 Polaromonas naphthalenivorans CJ2 class I/II aminotransferase YP_982376.1 2288012 R 365044 CDS YP_982377.1 121605048 4688349 complement(2289055..2290038) 1 NC_008781.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: pol:Bpro_2762 cobalamin biosynthesis protein CobD; cobalamin biosynthesis protein CobD 2290038 4688349 Pnap_2148 Polaromonas naphthalenivorans CJ2 cobalamin biosynthesis protein CobD YP_982377.1 2289055 R 365044 CDS YP_982378.1 121605049 4688381 complement(2290046..2290738) 1 NC_008781.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: pol:Bpro_2763 cob(II)yrinic acid a,c-diamide reductase; cob(II)yrinic acid a,c-diamide reductase 2290738 4688381 Pnap_2149 Polaromonas naphthalenivorans CJ2 cob(II)yrinic acid a,c-diamide reductase YP_982378.1 2290046 R 365044 CDS YP_982379.1 121605050 4688342 complement(2290743..2291324) 1 NC_008781.1 KEGG: pol:Bpro_2764 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase 2291324 4688342 Pnap_2150 Polaromonas naphthalenivorans CJ2 cob(I)alamin adenosyltransferase YP_982379.1 2290743 R 365044 CDS YP_982380.1 121605051 4688353 complement(2291331..2292107) 1 NC_008781.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2765 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 2292107 4688353 Pnap_2151 Polaromonas naphthalenivorans CJ2 uroporphyrin-III C-methyltransferase YP_982380.1 2291331 R 365044 CDS YP_982381.1 121605052 4688370 complement(2292088..2292438) 1 NC_008781.1 KEGG: pol:Bpro_2766 hypothetical protein; hypothetical protein 2292438 4688370 Pnap_2152 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982381.1 2292088 R 365044 CDS YP_982382.1 121605053 4687649 complement(2292435..2293430) 1 NC_008781.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2767 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase 2293430 4687649 Pnap_2153 Polaromonas naphthalenivorans CJ2 precorrin-3B C(17)-methyltransferase YP_982382.1 2292435 R 365044 CDS YP_982383.1 121605054 4687564 complement(2293427..2294254) 1 NC_008781.1 KEGG: pol:Bpro_2768 hypothetical protein; hypothetical protein 2294254 4687564 Pnap_2154 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982383.1 2293427 R 365044 CDS YP_982384.1 121605055 4687550 complement(2294270..2294458) 1 NC_008781.1 hypothetical protein 2294458 4687550 Pnap_2155 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982384.1 2294270 R 365044 CDS YP_982385.1 121605056 4687519 complement(2294498..2294932) 1 NC_008781.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pol:Bpro_2769 cobalamin (vitamin B12) biosynthesis CbiG protein; cobalamin (vitamin B12) biosynthesis protein CbiG 2294932 4687519 Pnap_2156 Polaromonas naphthalenivorans CJ2 cobalamin (vitamin B12) biosynthesis protein CbiG YP_982385.1 2294498 R 365044 CDS YP_982386.1 121605057 4687526 complement(2294929..2295690) 1 NC_008781.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pol:Bpro_2773 cobalamin (vitamin B12) biosynthesis CbiG protein; cobalamin (vitamin B12) biosynthesis protein CbiG 2295690 4687526 Pnap_2157 Polaromonas naphthalenivorans CJ2 cobalamin (vitamin B12) biosynthesis protein CbiG YP_982386.1 2294929 R 365044 CDS YP_982387.1 121605058 4687473 complement(2295687..2296508) 1 NC_008781.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2774 precorrin-2 C20-methyltransferase; precorrin-2 C(20)-methyltransferase 2296508 4687473 Pnap_2158 Polaromonas naphthalenivorans CJ2 precorrin-2 C(20)-methyltransferase YP_982387.1 2295687 R 365044 CDS YP_982388.1 121605059 4687426 complement(2296505..2297815) 1 NC_008781.1 KEGG: pol:Bpro_2775 precorrin-6y C5,15-methyltransferase, subunit CbiE; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 2297815 4687426 Pnap_2159 Polaromonas naphthalenivorans CJ2 precorrin-6y C5,15-methyltransferase subunit CbiE YP_982388.1 2296505 R 365044 CDS YP_982389.1 121605060 4688324 complement(2297812..2298909) 1 NC_008781.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 2298909 cbiD 4688324 cbiD Polaromonas naphthalenivorans CJ2 cobalt-precorrin-6A synthase YP_982389.1 2297812 R 365044 CDS YP_982390.1 121605061 4687402 complement(2298906..2299592) 1 NC_008781.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: pol:Bpro_2777 precorrin-8X methylmutase CbiC/CobH; precorrin-8X methylmutase CbiC/CobH 2299592 4687402 Pnap_2161 Polaromonas naphthalenivorans CJ2 precorrin-8X methylmutase CbiC/CobH YP_982390.1 2298906 R 365044 CDS YP_982391.1 121605062 4687373 complement(2299589..2300554) 1 NC_008781.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mca:MCA2299 CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein 2300554 4687373 Pnap_2162 Polaromonas naphthalenivorans CJ2 cobalamin (vitamin B12) biosynthesis CbiX protein YP_982391.1 2299589 R 365044 CDS YP_982392.1 121605063 4687399 complement(2300551..2301375) 1 NC_008781.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_2779 precorrin-4 C11-methyltransferase; precorrin-4 C(11)-methyltransferase 2301375 4687399 Pnap_2163 Polaromonas naphthalenivorans CJ2 precorrin-4 C(11)-methyltransferase YP_982392.1 2300551 R 365044 CDS YP_982393.1 121605064 4686926 complement(2301958..2302923) 1 NC_008781.1 PFAM: Auxin Efflux Carrier; KEGG: eba:ebA5059 predicted permease; auxin efflux carrier 2302923 4686926 Pnap_2164 Polaromonas naphthalenivorans CJ2 auxin efflux carrier YP_982393.1 2301958 R 365044 CDS YP_982394.1 121605065 4686279 complement(2302953..2303852) 1 NC_008781.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0336 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 2303852 4686279 Pnap_2165 Polaromonas naphthalenivorans CJ2 6-phosphogluconate dehydrogenase YP_982394.1 2302953 R 365044 CDS YP_982395.1 121605066 4687335 complement(2304099..2305229) 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2411 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2305229 4687335 Pnap_2166 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_982395.1 2304099 R 365044 CDS YP_982396.1 121605067 4687272 complement(2305406..2305753) 1 NC_008781.1 KEGG: pol:Bpro_2410 hypothetical protein; hypothetical protein 2305753 4687272 Pnap_2167 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982396.1 2305406 R 365044 CDS YP_982397.1 121605068 4687665 complement(2305750..2306190) 1 NC_008781.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 2306190 4687665 Pnap_2168 Polaromonas naphthalenivorans CJ2 DNA polymerase III subunit chi YP_982397.1 2305750 R 365044 CDS YP_982398.1 121605069 4687656 complement(2306187..2307719) 1 NC_008781.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: pol:Bpro_2408 leucyl aminopeptidase; leucyl aminopeptidase 2307719 4687656 Pnap_2169 Polaromonas naphthalenivorans CJ2 leucyl aminopeptidase YP_982398.1 2306187 R 365044 CDS YP_982399.1 121605070 4687686 2307798..2308919 1 NC_008781.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pol:Bpro_2407 permease YjgP/YjgQ; permease 2308919 4687686 Pnap_2170 Polaromonas naphthalenivorans CJ2 permease YP_982399.1 2307798 D 365044 CDS YP_982400.1 121605071 4687609 2308916..2310055 1 NC_008781.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pol:Bpro_2406 permease YjgP/YjgQ; permease 2310055 4687609 Pnap_2171 Polaromonas naphthalenivorans CJ2 permease YP_982400.1 2308916 D 365044 CDS YP_982401.1 121605072 4687619 2310091..2310468 1 NC_008781.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: pol:Bpro_2405 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein 2310468 4687619 Pnap_2172 Polaromonas naphthalenivorans CJ2 cobalamin (vitamin B12) biosynthesis CbiX protein YP_982401.1 2310091 D 365044 CDS YP_982402.1 121605073 4687640 2310573..2311517 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2404 transcriptional regulator, LysR family; transcriptional regulator CysB-like protein 2311517 4687640 Pnap_2173 Polaromonas naphthalenivorans CJ2 transcriptional regulator CysB-like protein YP_982402.1 2310573 D 365044 CDS YP_982403.1 121605074 4687647 2311521..2312705 1 NC_008781.1 catalyzes the transfer of an amino moiety; putative aminotransferase 2312705 4687647 Pnap_2174 Polaromonas naphthalenivorans CJ2 putative aminotransferase YP_982403.1 2311521 D 365044 CDS YP_982404.1 121605075 4687611 2312796..2312954 1 NC_008781.1 KEGG: pol:Bpro_2400 hypothetical protein; hypothetical protein 2312954 4687611 Pnap_2175 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982404.1 2312796 D 365044 CDS YP_982405.1 121605076 4686918 complement(2313015..2316935) 1 NC_008781.1 KEGG: pol:Bpro_2399 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA 2316935 4686918 Pnap_2176 Polaromonas naphthalenivorans CJ2 ATP-dependent helicase HrpA YP_982405.1 2313015 R 365044 CDS YP_982406.1 121605077 4687042 2317118..2318470 1 NC_008781.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2318470 4687042 Pnap_2177 Polaromonas naphthalenivorans CJ2 N-acetylglutamate synthase YP_982406.1 2317118 D 365044 CDS YP_982407.1 121605078 4687262 complement(2318500..2319972) 1 NC_008781.1 KEGG: algE; outer membrane protein AlgE; hypothetical protein 2319972 4687262 Pnap_2178 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982407.1 2318500 R 365044 CDS YP_982408.1 121605079 4687073 complement(2320099..2320836) 1 NC_008781.1 hypothetical protein 2320836 4687073 Pnap_2179 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982408.1 2320099 R 365044 CDS YP_982409.1 121605080 4687019 complement(2320859..2323993) 1 NC_008781.1 PFAM: acriflavin resistance protein; KEGG: neu:NE0669 acriflavin resistance protein; acriflavin resistance protein 2323993 4687019 Pnap_2180 Polaromonas naphthalenivorans CJ2 acriflavin resistance protein YP_982409.1 2320859 R 365044 CDS YP_982410.1 121605081 4686889 complement(2324046..2324999) 1 NC_008781.1 KEGG: neu:NE0670 possible membrane fusion protein MtrC; hypothetical protein 2324999 4686889 Pnap_2181 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982410.1 2324046 R 365044 CDS YP_982411.1 121605082 4687020 complement(2325034..2325765) 1 NC_008781.1 KEGG: bxe:Bxe_B1750 hypothetical protein; hypothetical protein 2325765 4687020 Pnap_2182 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982411.1 2325034 R 365044 CDS YP_982412.1 121605083 4686869 complement(2325804..2328968) 1 NC_008781.1 PFAM: acriflavin resistance protein; KEGG: neu:NE0669 acriflavin resistance protein; acriflavin resistance protein 2328968 4686869 Pnap_2183 Polaromonas naphthalenivorans CJ2 acriflavin resistance protein YP_982412.1 2325804 R 365044 CDS YP_982413.1 121605084 4686913 complement(2329015..2329455) 1 NC_008781.1 hypothetical protein 2329455 4686913 Pnap_2184 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982413.1 2329015 R 365044 CDS YP_982414.1 121605085 4686839 2329588..2330295 1 NC_008781.1 PFAM: dienelactone hydrolase; KEGG: pol:Bpro_2392 phosphoribosyltransferase; dienelactone hydrolase 2330295 4686839 Pnap_2185 Polaromonas naphthalenivorans CJ2 dienelactone hydrolase YP_982414.1 2329588 D 365044 CDS YP_982415.1 121605086 4686894 2330308..2332356 1 NC_008781.1 PFAM: phosphoribosyltransferase; Erythromycin esterase; KEGG: pol:Bpro_2391 erythromycin esterase; erythromycin esterase 2332356 4686894 Pnap_2186 Polaromonas naphthalenivorans CJ2 erythromycin esterase YP_982415.1 2330308 D 365044 CDS YP_982416.1 121605087 4686760 complement(2332362..2333738) 1 NC_008781.1 PFAM: HI0933 family protein; KEGG: pol:Bpro_2266 HI0933-like protein; hypothetical protein 2333738 4686760 Pnap_2187 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982416.1 2332362 R 365044 CDS YP_982417.1 121605088 4686775 complement(2333971..2334360) 1 NC_008781.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: mag:amb3965 uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit; carboxymuconolactone decarboxylase 2334360 4686775 Pnap_2188 Polaromonas naphthalenivorans CJ2 carboxymuconolactone decarboxylase YP_982417.1 2333971 R 365044 CDS YP_982418.1 121605089 4686709 complement(2334372..2334764) 1 NC_008781.1 PFAM: regulatory protein, MerR; KEGG: sma:SAV6758 MerR-family transcriptional regulator; MerR family transcriptional regulator 2334764 4686709 Pnap_2189 Polaromonas naphthalenivorans CJ2 MerR family transcriptional regulator YP_982418.1 2334372 R 365044 CDS YP_982419.1 121605090 4686757 complement(2334845..2335282) 1 NC_008781.1 hypothetical protein 2335282 4686757 Pnap_2190 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982419.1 2334845 R 365044 CDS YP_982420.1 121605091 4686667 complement(2335320..2335736) 1 NC_008781.1 PFAM: regulatory protein, ArsR; KEGG: ttj:TTHA0156 hypothetical protein; regulatory protein ArsR 2335736 4686667 Pnap_2191 Polaromonas naphthalenivorans CJ2 regulatory protein ArsR YP_982420.1 2335320 R 365044 CDS YP_982421.1 121605092 4686698 complement(2335733..2336824) 1 NC_008781.1 hypothetical protein 2336824 4686698 Pnap_2192 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982421.1 2335733 R 365044 CDS YP_982422.1 121605093 4686636 complement(2337008..2340319) 1 NC_008781.1 PFAM: UvrD/REP helicase; KEGG: pol:Bpro_2265 UvrD/REP helicase; UvrD/REP helicase 2340319 4686636 Pnap_2193 Polaromonas naphthalenivorans CJ2 UvrD/REP helicase YP_982422.1 2337008 R 365044 CDS YP_982423.1 121605094 4686592 complement(2340316..2342883) 1 NC_008781.1 KEGG: pol:Bpro_2264 RecB family exonuclease-like; exonuclease-like protein 2342883 4686592 Pnap_2194 Polaromonas naphthalenivorans CJ2 exonuclease-like protein YP_982423.1 2340316 R 365044 CDS YP_982424.1 121605095 4686559 2343052..2343384 1 NC_008781.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_2263 thioredoxin; thioredoxin 2343384 4686559 Pnap_2195 Polaromonas naphthalenivorans CJ2 thioredoxin YP_982424.1 2343052 D 365044 CDS YP_982425.1 121605096 4686103 2343636..2344898 1 NC_008781.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2344898 rho 4686103 rho Polaromonas naphthalenivorans CJ2 transcription termination factor Rho YP_982425.1 2343636 D 365044 CDS YP_982426.1 121605097 4687425 2345074..2345367 1 NC_008781.1 PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; 50S ribosomal protein L31 2345367 4687425 Pnap_2197 Polaromonas naphthalenivorans CJ2 50S ribosomal protein L31 YP_982426.1 2345074 D 365044 CDS YP_982427.1 121605098 4686402 2345489..2347258 1 NC_008781.1 KEGG: pol:Bpro_2260 hypothetical protein; hypothetical protein 2347258 4686402 Pnap_2198 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982427.1 2345489 D 365044 CDS YP_982428.1 121605099 4686415 2347255..2348622 1 NC_008781.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pol:Bpro_2259 MATE efflux family protein; MATE efflux family protein 2348622 4686415 Pnap_2199 Polaromonas naphthalenivorans CJ2 MATE efflux family protein YP_982428.1 2347255 D 365044 CDS YP_982429.1 121605100 4686370 complement(2348610..2349956) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: pol:Bpro_2258 multi-sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 2349956 4686370 Pnap_2200 Polaromonas naphthalenivorans CJ2 PAS/PAC sensor signal transduction histidine kinase YP_982429.1 2348610 R 365044 CDS YP_982430.1 121605101 4686357 complement(2349953..2350681) 1 NC_008781.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2257 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2350681 4686357 Pnap_2201 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_982430.1 2349953 R 365044 CDS YP_982431.1 121605102 4686360 complement(2350678..2351382) 1 NC_008781.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pol:Bpro_2256 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 2351382 4686360 Pnap_2202 Polaromonas naphthalenivorans CJ2 phosphate uptake regulator PhoU YP_982431.1 2350678 R 365044 CDS YP_982432.1 121605103 4686340 complement(2351439..2352221) 1 NC_008781.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 2352221 pstB 4686340 pstB Polaromonas naphthalenivorans CJ2 phosphate transporter ATP-binding protein YP_982432.1 2351439 R 365044 CDS YP_982433.1 121605104 4686343 complement(2352265..2353137) 1 NC_008781.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 2353137 pstA 4686343 pstA Polaromonas naphthalenivorans CJ2 phosphate transporter permease subunit PtsA YP_982433.1 2352265 R 365044 CDS YP_982434.1 121605105 4686337 complement(2353134..2354099) 1 NC_008781.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2253 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease 2354099 4686337 Pnap_2205 Polaromonas naphthalenivorans CJ2 phosphate ABC transporter permease YP_982434.1 2353134 R 365044 CDS YP_982435.1 121605106 4686831 complement(2354232..2355275) 1 NC_008781.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2252 periplasmic phosphate binding protein; phosphate ABC transporter substrate-binding protein 2355275 4686831 Pnap_2206 Polaromonas naphthalenivorans CJ2 phosphate ABC transporter substrate-binding protein YP_982435.1 2354232 R 365044 CDS YP_982436.1 121605107 4686824 2355474..2355956 1 NC_008781.1 PFAM: beta-Ig-H3/fasciclin; KEGG: pol:Bpro_2251 beta-Ig-H3/fasciclin; beta-Ig-H3/fasciclin 2355956 4686824 Pnap_2207 Polaromonas naphthalenivorans CJ2 beta-Ig-H3/fasciclin YP_982436.1 2355474 D 365044 CDS YP_982437.1 121605108 4686820 2356086..2357240 1 NC_008781.1 KEGG: pol:Bpro_2250 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 2357240 4686820 Pnap_2208 Polaromonas naphthalenivorans CJ2 twin-arginine translocation pathway signal protein YP_982437.1 2356086 D 365044 CDS YP_982438.1 121605109 4686976 2357244..2358806 1 NC_008781.1 PFAM: Ppx/GppA phosphatase; KEGG: pol:Bpro_2249 Ppx/GppA phosphatase; Ppx/GppA phosphatase 2358806 4686976 Pnap_2209 Polaromonas naphthalenivorans CJ2 Ppx/GppA phosphatase YP_982438.1 2357244 D 365044 CDS YP_982439.1 121605110 4686936 2358878..2359438 1 NC_008781.1 KEGG: pol:Bpro_2248 hypothetical protein; hypothetical protein 2359438 4686936 Pnap_2210 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982439.1 2358878 D 365044 CDS YP_982440.1 121605111 4686427 complement(2359466..2359939) 1 NC_008781.1 PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_2247 putative phosphohistidine phosphatase, SixA; putative phosphohistidine phosphatase SixA 2359939 4686427 Pnap_2211 Polaromonas naphthalenivorans CJ2 putative phosphohistidine phosphatase SixA YP_982440.1 2359466 R 365044 CDS YP_982441.1 121605112 4686950 complement(2359946..2362051) 1 NC_008781.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2362051 4686950 Pnap_2212 Polaromonas naphthalenivorans CJ2 polyphosphate kinase YP_982441.1 2359946 R 365044 CDS YP_982442.1 121605113 4686270 complement(2362240..2363982) 1 NC_008781.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: pol:Bpro_2817 thiamine pyrophosphate enzyme-like TPP-binding; Fis family transcriptional regulator 2363982 4686270 Pnap_2213 Polaromonas naphthalenivorans CJ2 Fis family transcriptional regulator YP_982442.1 2362240 R 365044 CDS YP_982443.1 121605114 4686883 complement(2364006..2364308) 1 NC_008781.1 KEGG: pol:Bpro_2818 hypothetical protein; hypothetical protein 2364308 4686883 Pnap_2214 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982443.1 2364006 R 365044 CDS YP_982444.1 121605115 4686518 complement(2364420..2366882) 1 NC_008781.1 PFAM: MscS Mechanosensitive ion channel; KEGG: bbr:BB1859 hypothetical protein; mechanosensitive ion channel protein MscS 2366882 4686518 Pnap_2215 Polaromonas naphthalenivorans CJ2 mechanosensitive ion channel protein MscS YP_982444.1 2364420 R 365044 CDS YP_982445.1 121605116 4686800 complement(2366977..2368212) 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_2824 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2368212 4686800 Pnap_2216 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_982445.1 2366977 R 365044 CDS YP_982446.1 121605117 4689691 2368314..2369156 1 NC_008781.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: pol:Bpro_2825 transcriptional regulator, AraC family; AraC family transcriptional regulator 2369156 4689691 Pnap_2217 Polaromonas naphthalenivorans CJ2 AraC family transcriptional regulator YP_982446.1 2368314 D 365044 CDS YP_982447.1 121605118 4688671 complement(2369253..2370677) 1 NC_008781.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4051 probable coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase 2370677 4688671 Pnap_2218 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_982447.1 2369253 R 365044 CDS YP_982448.1 121605119 4687779 2370766..2371269 1 NC_008781.1 PFAM: CreA family protein; KEGG: eba:ebA3483 CreA protein; CreA family protein 2371269 4687779 Pnap_2219 Polaromonas naphthalenivorans CJ2 CreA family protein YP_982448.1 2370766 D 365044 CDS YP_982449.1 121605120 4687752 2371382..2372359 1 NC_008781.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: rfr:Rfer_0490 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein 2372359 4687752 Pnap_2220 Polaromonas naphthalenivorans CJ2 heat shock protein DnaJ domain-containing protein YP_982449.1 2371382 D 365044 CDS YP_982450.1 121605121 4690127 2372356..2372676 1 NC_008781.1 KEGG: dar:Daro_2064 bacterial regulatory proteins, MerR family; MerR family transcriptional regulator 2372676 4690127 Pnap_2221 Polaromonas naphthalenivorans CJ2 MerR family transcriptional regulator YP_982450.1 2372356 D 365044 CDS YP_982451.1 121605122 4689241 2372785..2373009 1 NC_008781.1 TIGRFAM: putative addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rfr:Rfer_3405 transcriptional regulator/antitoxin, MazE; putative addiction module antidote 2373009 4689241 Pnap_2222 Polaromonas naphthalenivorans CJ2 putative addiction module antidote YP_982451.1 2372785 D 365044 CDS YP_982452.1 121605123 4686251 2373006..2373410 1 NC_008781.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein; death-on-curing family protein 2373410 4686251 Pnap_2223 Polaromonas naphthalenivorans CJ2 death-on-curing family protein YP_982452.1 2373006 D 365044 CDS YP_982453.1 121605124 4686182 2373537..2374613 1 NC_008781.1 PFAM: Allergen V5/Tpx-1 family protein; KEGG: rfr:Rfer_4490 allergen V5/TPX-1 related; Allergen V5/Tpx-1 family protein 2374613 4686182 Pnap_2224 Polaromonas naphthalenivorans CJ2 Allergen V5/Tpx-1 family protein YP_982453.1 2373537 D 365044 CDS YP_982454.1 121605125 4687863 complement(2374721..2377324) 1 NC_008781.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2201 ATPase AAA-2; ATPase 2377324 4687863 Pnap_2225 Polaromonas naphthalenivorans CJ2 ATPase YP_982454.1 2374721 R 365044 CDS YP_982455.1 121605126 4689240 complement(2377463..2377936) 1 NC_008781.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: rfr:Rfer_1917 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE 2377936 4689240 Pnap_2226 Polaromonas naphthalenivorans CJ2 molybdopterin biosynthesis MoaE YP_982455.1 2377463 R 365044 CDS YP_982456.1 121605127 4686909 complement(2377942..2378193) 1 NC_008781.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: pol:Bpro_2194 thiamineS; molybdopterin converting factor subunit 1 2378193 4686909 Pnap_2227 Polaromonas naphthalenivorans CJ2 molybdopterin converting factor subunit 1 YP_982456.1 2377942 R 365044 CDS YP_982457.1 121605128 4687166 complement(2378207..2379466) 1 NC_008781.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: pol:Bpro_2193 MoeA-like, domain I and II; molybdenum cofactor synthesis domain-containing protein 2379466 4687166 Pnap_2228 Polaromonas naphthalenivorans CJ2 molybdenum cofactor synthesis domain-containing protein YP_982457.1 2378207 R 365044 CDS YP_982458.1 121605129 4690061 complement(2379506..2380042) 1 NC_008781.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: pol:Bpro_2192 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein MobB 2380042 4690061 Pnap_2229 Polaromonas naphthalenivorans CJ2 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_982458.1 2379506 R 365044 CDS YP_982459.1 121605130 4689090 complement(2380121..2381548) 1 NC_008781.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2381548 4689090 Pnap_2230 Polaromonas naphthalenivorans CJ2 threonine synthase YP_982459.1 2380121 R 365044 CDS YP_982460.1 121605131 4686870 complement(2381548..2382894) 1 NC_008781.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 2382894 4686870 Pnap_2231 Polaromonas naphthalenivorans CJ2 homoserine dehydrogenase YP_982460.1 2381548 R 365044 CDS YP_982461.1 121605132 4690071 complement(2382960..2384183) 1 NC_008781.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2384183 4690071 Pnap_2232 Polaromonas naphthalenivorans CJ2 aminotransferase AlaT YP_982461.1 2382960 R 365044 CDS YP_982462.1 121605133 4686054 2384380..2384772 1 NC_008781.1 PFAM: protein of unknown function DUF498; KEGG: pol:Bpro_2188 protein of unknown function DUF498; hypothetical protein 2384772 4686054 Pnap_2233 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982462.1 2384380 D 365044 CDS YP_982463.1 121605134 4686963 2384902..2385378 1 NC_008781.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_2187 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 2385378 4686963 Pnap_2234 Polaromonas naphthalenivorans CJ2 alkyl hydroperoxide reductase YP_982463.1 2384902 D 365044 CDS YP_982464.1 121605135 4687504 2385532..2387217 1 NC_008781.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: pol:Bpro_2186 PhoH-like protein; PhoH family protein 2387217 4687504 Pnap_2235 Polaromonas naphthalenivorans CJ2 PhoH family protein YP_982464.1 2385532 D 365044 CDS YP_982465.1 121605136 4686224 complement(2387875..2388540) 1 NC_008781.1 hypothetical protein 2388540 4686224 Pnap_2236 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982465.1 2387875 R 365044 CDS YP_982466.1 121605137 4689726 complement(2388552..2388932) 1 NC_008781.1 hypothetical protein 2388932 4689726 Pnap_2237 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982466.1 2388552 R 365044 CDS YP_982467.1 121605138 4687069 complement(2389151..2389708) 1 NC_008781.1 hypothetical protein 2389708 4687069 Pnap_2238 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982467.1 2389151 R 365044 CDS YP_982468.1 121605139 4688454 complement(2389705..2390202) 1 NC_008781.1 PFAM: glycoside hydrolase, family 24; KEGG: nmu:Nmul_A1445 glycoside hydrolase, family 24; glycoside hydrolase 2390202 4688454 Pnap_2239 Polaromonas naphthalenivorans CJ2 glycoside hydrolase YP_982468.1 2389705 R 365044 CDS YP_982469.1 121605140 4686237 complement(2390199..2390531) 1 NC_008781.1 hypothetical protein 2390531 4686237 Pnap_2240 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982469.1 2390199 R 365044 CDS YP_982470.1 121605141 4687513 complement(2390541..2390762) 1 NC_008781.1 KEGG: mca:MCA2677 hypothetical protein; hypothetical protein 2390762 4687513 Pnap_2241 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982470.1 2390541 R 365044 CDS YP_982471.1 121605142 4686195 complement(2390759..2392642) 1 NC_008781.1 KEGG: mca:MCA2676 hypothetical protein; hypothetical protein 2392642 4686195 Pnap_2242 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982471.1 2390759 R 365044 CDS YP_982472.1 121605143 4687298 complement(2392647..2393051) 1 NC_008781.1 KEGG: rso:RSc0878 hypothetical protein; hypothetical protein 2393051 4687298 Pnap_2243 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982472.1 2392647 R 365044 CDS YP_982473.1 121605144 4687848 complement(2393048..2393446) 1 NC_008781.1 KEGG: mca:MCA2674 hypothetical protein; hypothetical protein 2393446 4687848 Pnap_2244 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982473.1 2393048 R 365044 CDS YP_982474.1 121605145 4689193 complement(2393450..2394631) 1 NC_008781.1 KEGG: eba:ebA7239 hypothetical protein; hypothetical protein 2394631 4689193 Pnap_2245 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982474.1 2393450 R 365044 CDS YP_982475.1 121605146 4690020 complement(2394656..2398156) 1 NC_008781.1 KEGG: rso:RSc0875 putative transmembrane protein; hypothetical protein 2398156 4690020 Pnap_2246 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982475.1 2394656 R 365044 CDS YP_982476.1 121605147 4689190 complement(2398163..2398561) 1 NC_008781.1 KEGG: dps:DP1592 hypothetical protein; hypothetical protein 2398561 4689190 Pnap_2247 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982476.1 2398163 R 365044 CDS YP_982477.1 121605148 4688657 complement(2398582..2401326) 1 NC_008781.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sas:SAS0944 hypothetical protein; TP901 family phage tail tape measure protein 2401326 4688657 Pnap_2248 Polaromonas naphthalenivorans CJ2 TP901 family phage tail tape measure protein YP_982477.1 2398582 R 365044 CDS YP_982478.1 121605149 4689352 complement(2401432..2402190) 1 NC_008781.1 KEGG: xfa:XF0518 hypothetical protein; hypothetical protein 2402190 4689352 Pnap_2249 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982478.1 2401432 R 365044 CDS YP_982479.1 121605150 4687667 complement(2402222..2402641) 1 NC_008781.1 hypothetical protein 2402641 4687667 Pnap_2250 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982479.1 2402222 R 365044 CDS YP_982480.1 121605151 4686876 complement(2402642..2402950) 1 NC_008781.1 hypothetical protein 2402950 4686876 Pnap_2251 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982480.1 2402642 R 365044 CDS YP_982481.1 121605152 4687781 complement(2402989..2403351) 1 NC_008781.1 KEGG: stm:STM1034 putative RecA/RadA recombinase; putative RecA/RadA recombinase 2403351 4687781 Pnap_2252 Polaromonas naphthalenivorans CJ2 putative RecA/RadA recombinase YP_982481.1 2402989 R 365044 CDS YP_982482.1 121605153 4689710 complement(2403419..2405443) 1 NC_008781.1 PFAM: peptidase S14, ClpP; KEGG: stm:STM0912 ATP-dependent protease; peptidase S14, ClpP 2405443 4689710 Pnap_2253 Polaromonas naphthalenivorans CJ2 peptidase S14, ClpP YP_982482.1 2403419 R 365044 CDS YP_982483.1 121605154 4686591 complement(2405542..2407131) 1 NC_008781.1 TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: xfa:XF0510 hypothetical protein; lambda family phage portal protein 2407131 4686591 Pnap_2254 Polaromonas naphthalenivorans CJ2 lambda family phage portal protein YP_982483.1 2405542 R 365044 CDS YP_982484.1 121605155 4687434 complement(2407141..2407365) 1 NC_008781.1 KEGG: eci:UTI89_C5118 hypothetical protein; hypothetical protein 2407365 4687434 Pnap_2255 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982484.1 2407141 R 365044 CDS YP_982485.1 121605156 4686383 complement(2407418..2407771) 1 NC_008781.1 hypothetical protein 2407771 4686383 Pnap_2256 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982485.1 2407418 R 365044 CDS YP_982486.1 121605157 4687817 complement(2407771..2409948) 1 NC_008781.1 PFAM: phage terminase GpA; KEGG: hch:HCH_02894 bacteriophage tail assembly protein; phage terminase GpA 2409948 4687817 Pnap_2257 Polaromonas naphthalenivorans CJ2 phage terminase GpA YP_982486.1 2407771 R 365044 CDS YP_982487.1 121605158 4687913 complement(2409948..2410454) 1 NC_008781.1 KEGG: hch:HCH_02893 phage DNA packaging protein, Nu1 subunit of terminase; hypothetical protein 2410454 4687913 Pnap_2258 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982487.1 2409948 R 365044 CDS YP_982488.1 121605159 4688666 complement(2410582..2411361) 1 NC_008781.1 KEGG: xfa:XF0515 hypothetical protein; hypothetical protein 2411361 4688666 Pnap_2259 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982488.1 2410582 R 365044 CDS YP_982489.1 121605160 4689264 complement(2411367..2412200) 1 NC_008781.1 KEGG: bbr:BB1683 phage-related hypothetical protein; hypothetical protein 2412200 4689264 Pnap_2260 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982489.1 2411367 R 365044 CDS YP_982490.1 121605161 4690075 complement(2412209..2412550) 1 NC_008781.1 hypothetical protein 2412550 4690075 Pnap_2261 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982490.1 2412209 R 365044 CDS YP_982491.1 121605162 4690137 complement(2412633..2413163) 1 NC_008781.1 hypothetical protein 2413163 4690137 Pnap_2262 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982491.1 2412633 R 365044 CDS YP_982492.1 121605163 4689719 2413196..2413450 1 NC_008781.1 hypothetical protein 2413450 4689719 Pnap_2263 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982492.1 2413196 D 365044 CDS YP_982493.1 121605164 4689444 complement(2413945..2414508) 1 NC_008781.1 KEGG: bxe:Bxe_A3088 hypothetical protein; hypothetical protein 2414508 4689444 Pnap_2264 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982493.1 2413945 R 365044 CDS YP_982494.1 121605165 4688956 2414590..2415114 1 NC_008781.1 KEGG: ecc:c1410 hypothetical protein; hypothetical protein 2415114 4688956 Pnap_2265 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982494.1 2414590 D 365044 CDS YP_982495.1 121605166 4689720 2415186..2415707 1 NC_008781.1 hypothetical protein 2415707 4689720 Pnap_2266 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982495.1 2415186 D 365044 CDS YP_982496.1 121605167 4688098 2415752..2416297 1 NC_008781.1 KEGG: rpc:RPC_3570 sec-C metal-binding protein; hypothetical protein 2416297 4688098 Pnap_2267 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982496.1 2415752 D 365044 CDS YP_982497.1 121605168 4688691 2416574..2416837 1 NC_008781.1 hypothetical protein 2416837 4688691 Pnap_2268 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982497.1 2416574 D 365044 CDS YP_982498.1 121605169 4689744 2416834..2417316 1 NC_008781.1 hypothetical protein 2417316 4689744 Pnap_2269 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982498.1 2416834 D 365044 CDS YP_982499.1 121605170 4688309 2417313..2417594 1 NC_008781.1 hypothetical protein 2417594 4688309 Pnap_2270 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982499.1 2417313 D 365044 CDS YP_982500.1 121605171 4687268 2417591..2417752 1 NC_008781.1 hypothetical protein 2417752 4687268 Pnap_2271 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982500.1 2417591 D 365044 CDS YP_982501.1 121605172 4689612 2417764..2418123 1 NC_008781.1 hypothetical protein 2418123 4689612 Pnap_2272 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982501.1 2417764 D 365044 CDS YP_982502.1 121605173 4688186 2418120..2418347 1 NC_008781.1 hypothetical protein 2418347 4688186 Pnap_2273 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982502.1 2418120 D 365044 CDS YP_982503.1 121605174 4689011 2418344..2419057 1 NC_008781.1 hypothetical protein 2419057 4689011 Pnap_2274 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982503.1 2418344 D 365044 CDS YP_982504.1 121605175 4690168 2419102..2420919 1 NC_008781.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: bxe:Bxe_A3097 ParB-like partition protein; parB-like partition proteins 2420919 4690168 Pnap_2275 Polaromonas naphthalenivorans CJ2 parB-like partition proteins YP_982504.1 2419102 D 365044 CDS YP_982505.1 121605176 4690083 2420916..2421284 1 NC_008781.1 hypothetical protein 2421284 4690083 Pnap_2276 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982505.1 2420916 D 365044 CDS YP_982506.1 121605177 4689476 2421392..2421943 1 NC_008781.1 hypothetical protein 2421943 4689476 Pnap_2277 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982506.1 2421392 D 365044 CDS YP_982507.1 121605178 4688140 2422170..2422901 1 NC_008781.1 KEGG: hypothetical protein; hypothetical protein 2422901 4688140 Pnap_2278 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982507.1 2422170 D 365044 CDS YP_982508.1 121605179 4687501 2423183..2423695 1 NC_008781.1 hypothetical protein 2423695 4687501 Pnap_2279 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982508.1 2423183 D 365044 CDS YP_982509.1 121605180 4688865 2424001..2424351 1 NC_008781.1 KEGG: eba:ebA22 hypothetical protein; hypothetical protein 2424351 4688865 Pnap_2280 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982509.1 2424001 D 365044 CDS YP_982510.1 121605181 4690219 2424348..2424821 1 NC_008781.1 hypothetical protein 2424821 4690219 Pnap_2281 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982510.1 2424348 D 365044 CDS YP_982511.1 121605182 4689127 2424818..2425156 1 NC_008781.1 hypothetical protein 2425156 4689127 Pnap_2282 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982511.1 2424818 D 365044 CDS YP_982512.1 121605183 4688581 2425320..2426315 1 NC_008781.1 PFAM: phage integrase family protein; KEGG: nwi:Nwi_0831 phage integrase; phage integrase family protein 2426315 4688581 Pnap_2283 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_982512.1 2425320 D 365044 CDS YP_982513.1 121605184 4690119 complement(2426499..2427221) 1 NC_008781.1 KEGG: pol:Bpro_2184 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2427221 4690119 Pnap_2284 Polaromonas naphthalenivorans CJ2 DNA polymerase III subunit epsilon YP_982513.1 2426499 R 365044 CDS YP_982514.1 121605185 4686953 complement(2427248..2427586) 1 NC_008781.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pol:Bpro_2183 ferredoxin, 2Fe-2S type; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 2427586 4686953 Pnap_2285 Polaromonas naphthalenivorans CJ2 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_982514.1 2427248 R 365044 CDS YP_982515.1 121605186 4686886 complement(2427626..2429488) 1 NC_008781.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2429488 hscA 4686886 hscA Polaromonas naphthalenivorans CJ2 chaperone protein HscA YP_982515.1 2427626 R 365044 CDS YP_982516.1 121605187 4687895 complement(2429520..2430038) 1 NC_008781.1 TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: pol:Bpro_2181 co-chaperone Hsc20; co-chaperone Hsc20 2430038 4687895 Pnap_2287 Polaromonas naphthalenivorans CJ2 co-chaperone Hsc20 YP_982516.1 2429520 R 365044 CDS YP_982517.1 121605188 4687782 complement(2430136..2430459) 1 NC_008781.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: pol:Bpro_2180 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 2430459 4687782 Pnap_2288 Polaromonas naphthalenivorans CJ2 iron-sulfur cluster assembly protein IscA YP_982517.1 2430136 R 365044 CDS YP_982518.1 121605189 4687607 complement(2430496..2430897) 1 NC_008781.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: pol:Bpro_2179 FeS cluster assembly scaffold IscU; scaffold protein 2430897 4687607 Pnap_2289 Polaromonas naphthalenivorans CJ2 scaffold protein YP_982518.1 2430496 R 365044 CDS YP_982519.1 121605190 4687692 complement(2430965..2432182) 1 NC_008781.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pol:Bpro_2178 cysteine desulfurase IscS; cysteine desulfurase IscS 2432182 4687692 Pnap_2290 Polaromonas naphthalenivorans CJ2 cysteine desulfurase IscS YP_982519.1 2430965 R 365044 CDS YP_982520.1 121605191 4687433 complement(2432256..2432792) 1 NC_008781.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: pol:Bpro_2177 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 2432792 4687433 Pnap_2291 Polaromonas naphthalenivorans CJ2 BadM/Rrf2 family transcriptional regulator YP_982520.1 2432256 R 365044 CDS YP_982521.1 121605192 4686536 complement(2432803..2433054) 1 NC_008781.1 hypothetical protein 2433054 4686536 Pnap_2292 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982521.1 2432803 R 365044 CDS YP_982522.1 121605193 4688510 complement(2433142..2434104) 1 NC_008781.1 KEGG: xac:XAC3966 hypothetical protein; hypothetical protein 2434104 4688510 Pnap_2293 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982522.1 2433142 R 365044 CDS YP_982523.1 121605194 4690202 complement(2434112..2434363) 1 NC_008781.1 hypothetical protein 2434363 4690202 Pnap_2294 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982523.1 2434112 R 365044 CDS YP_982524.1 121605195 4689348 2434578..2435495 1 NC_008781.1 KEGG: tbd:Tbd_0731 hypothetical protein; hypothetical protein 2435495 4689348 Pnap_2295 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982524.1 2434578 D 365044 CDS YP_982525.1 121605196 4688727 complement(2435604..2436269) 1 NC_008781.1 PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_3008 DsbA oxidoreductase; DSBA oxidoreductase 2436269 4688727 Pnap_2296 Polaromonas naphthalenivorans CJ2 DSBA oxidoreductase YP_982525.1 2435604 R 365044 CDS YP_982526.1 121605197 4686201 2436399..2437757 1 NC_008781.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pol:Bpro_1210 beta-lactamase-like; beta-lactamase domain-containing protein 2437757 4686201 Pnap_2297 Polaromonas naphthalenivorans CJ2 beta-lactamase domain-containing protein YP_982526.1 2436399 D 365044 CDS YP_982527.1 121605198 4687208 complement(2437771..2438265) 1 NC_008781.1 PFAM: UspA domain protein; KEGG: pol:Bpro_1206 UspA; UspA domain-containing protein 2438265 4687208 Pnap_2298 Polaromonas naphthalenivorans CJ2 UspA domain-containing protein YP_982527.1 2437771 R 365044 CDS YP_982528.1 121605199 4688728 2438358..2439362 1 NC_008781.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_1201 putative alcohol dehydrogenase-like oxidoreductase protein; alcohol dehydrogenase 2439362 4688728 Pnap_2299 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_982528.1 2438358 D 365044 CDS YP_982529.1 121605200 4689608 2439538..2440191 1 NC_008781.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_1200 transport-associated; transporter 2440191 4689608 Pnap_2300 Polaromonas naphthalenivorans CJ2 transporter YP_982529.1 2439538 D 365044 CDS YP_982530.1 121605201 4687306 2440243..2440671 1 NC_008781.1 PFAM: heat shock protein Hsp20; KEGG: pol:Bpro_1199 heat shock protein HSP20; heat shock protein Hsp20 2440671 4687306 Pnap_2301 Polaromonas naphthalenivorans CJ2 heat shock protein Hsp20 YP_982530.1 2440243 D 365044 CDS YP_982531.1 121605202 4687687 2440683..2441414 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1942 ABC transporter related; ABC transporter-like protein 2441414 4687687 Pnap_2302 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982531.1 2440683 D 365044 CDS YP_982532.1 121605203 4689191 2441419..2443785 1 NC_008781.1 PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_1941 protein of unknown function DUF214; hypothetical protein 2443785 4689191 Pnap_2303 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982532.1 2441419 D 365044 CDS YP_982533.1 121605204 4688404 2443789..2444979 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rfr:Rfer_1940 secretion protein HlyD; RND family efflux transporter MFP subunit 2444979 4688404 Pnap_2304 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_982533.1 2443789 D 365044 CDS YP_982534.1 121605205 4687022 complement(2445028..2445954) 1 NC_008781.1 PFAM: UspA domain protein; KEGG: pol:Bpro_1168 UspA; UspA domain-containing protein 2445954 4687022 Pnap_2305 Polaromonas naphthalenivorans CJ2 UspA domain-containing protein YP_982534.1 2445028 R 365044 CDS YP_982535.1 121605206 4686362 2446087..2446554 1 NC_008781.1 PFAM: UspA domain protein; KEGG: pol:Bpro_4298 UspA; UspA domain-containing protein 2446554 4686362 Pnap_2306 Polaromonas naphthalenivorans CJ2 UspA domain-containing protein YP_982535.1 2446087 D 365044 CDS YP_982536.1 121605207 4689590 2446657..2447400 1 NC_008781.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_4047 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 2447400 4689590 Pnap_2307 Polaromonas naphthalenivorans CJ2 3-oxoacyl-(acyl-carrier-protein) reductase YP_982536.1 2446657 D 365044 CDS YP_982537.1 121605208 4686361 2447606..2448181 1 NC_008781.1 PFAM: Chromate transporter; KEGG: pol:Bpro_3026 chromate transporter; chromate transporter 2448181 4686361 Pnap_2308 Polaromonas naphthalenivorans CJ2 chromate transporter YP_982537.1 2447606 D 365044 CDS YP_982538.1 121605209 4686204 2448178..2448762 1 NC_008781.1 PFAM: Chromate transporter; KEGG: pol:Bpro_3027 chromate transporter; chromate transporter 2448762 4686204 Pnap_2309 Polaromonas naphthalenivorans CJ2 chromate transporter YP_982538.1 2448178 D 365044 CDS YP_982539.1 121605210 4687767 2448960..2450147 1 NC_008781.1 TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: bxe:Bxe_B1438 putative homocitrate synthase; homocitrate synthase 2450147 4687767 Pnap_2310 Polaromonas naphthalenivorans CJ2 homocitrate synthase YP_982539.1 2448960 D 365044 CDS YP_982540.1 121605211 4686941 2450144..2450941 1 NC_008781.1 TIGRFAM: serine O-acetyltransferase; KEGG: mca:MCA1830 serine acetyltransferase; serine O-acetyltransferase 2450941 4686941 Pnap_2311 Polaromonas naphthalenivorans CJ2 serine O-acetyltransferase YP_982540.1 2450144 D 365044 CDS YP_982541.1 121605212 4687015 2450947..2451288 1 NC_008781.1 associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage; nitrogenase stabilizing/protective protein 2451288 nifW 4687015 nifW Polaromonas naphthalenivorans CJ2 nitrogenase stabilizing/protective protein YP_982541.1 2450947 D 365044 CDS YP_982542.1 121605213 4688461 2451308..2452156 1 NC_008781.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: bxe:Bxe_B1436 electron transfer flavoprotein, fix A (beta subunit); electron transfer flavoprotein subunit beta 2452156 4688461 Pnap_2313 Polaromonas naphthalenivorans CJ2 electron transfer flavoprotein subunit beta YP_982542.1 2451308 D 365044 CDS YP_982543.1 121605214 4688958 2452153..2453268 1 NC_008781.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: bxe:Bxe_B1435 electron transfer flavoprotein FixB (alpha subunit); electron transfer flavoprotein subunit beta 2453268 4688958 Pnap_2314 Polaromonas naphthalenivorans CJ2 electron transfer flavoprotein subunit beta YP_982543.1 2452153 D 365044 CDS YP_982544.1 121605215 4689868 2453296..2454606 1 NC_008781.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: bxe:Bxe_B1434 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 2454606 4689868 Pnap_2315 Polaromonas naphthalenivorans CJ2 electron-transferring-flavoprotein dehydrogenase YP_982544.1 2453296 D 365044 CDS YP_982545.1 121605216 4689894 2454603..2454902 1 NC_008781.1 KEGG: bxe:Bxe_B1433 putative ferredoxin like protein; FixX; putative ferredoxin-like protein FixX 2454902 4689894 Pnap_2316 Polaromonas naphthalenivorans CJ2 putative ferredoxin-like protein FixX YP_982545.1 2454603 D 365044 CDS YP_982546.1 121605217 4689670 2454922..2455245 1 NC_008781.1 KEGG: mca:MCA0256 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S 2455245 4689670 Pnap_2317 Polaromonas naphthalenivorans CJ2 ferredoxin, 2Fe-2S YP_982546.1 2454922 D 365044 CDS YP_982547.1 121605218 4689426 2455242..2455721 1 NC_008781.1 KEGG: rpc:RPC_4469 tetratricopeptide TPR_2; hypothetical protein 2455721 4689426 Pnap_2318 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982547.1 2455242 D 365044 CDS YP_982548.1 121605219 4687898 complement(2455767..2456369) 1 NC_008781.1 PFAM: NifQ family protein; KEGG: bxe:Bxe_B1476 putative nitrogen fixation-related protein(NifQ); NifQ family protein 2456369 4687898 Pnap_2319 Polaromonas naphthalenivorans CJ2 NifQ family protein YP_982548.1 2455767 R 365044 CDS YP_982549.1 121605220 4687834 complement(2456382..2456690) 1 NC_008781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bxe:Bxe_B1475 hypothetical protein; 4Fe-4S ferredoxin 2456690 4687834 Pnap_2320 Polaromonas naphthalenivorans CJ2 4Fe-4S ferredoxin YP_982549.1 2456382 R 365044 CDS YP_982550.1 121605221 4688119 complement(2456711..2456911) 1 NC_008781.1 PFAM: protein of unknown function DUF683; KEGG: bxe:Bxe_B1474 hypothetical protein; hypothetical protein 2456911 4688119 Pnap_2321 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982550.1 2456711 R 365044 CDS YP_982551.1 121605222 4687651 complement(2456914..2457426) 1 NC_008781.1 PFAM: protein of unknown function DUF269; KEGG: bxe:Bxe_B1473 hypothetical protein; hypothetical protein 2457426 4687651 Pnap_2322 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982551.1 2456914 R 365044 CDS YP_982552.1 121605223 4686325 complement(2457423..2457833) 1 NC_008781.1 TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: bxe:Bxe_B1472 nitrogen fixation-related protein (NifX); nitrogen fixation protein NifX 2457833 4686325 Pnap_2323 Polaromonas naphthalenivorans CJ2 nitrogen fixation protein NifX YP_982552.1 2457423 R 365044 CDS YP_982553.1 121605224 4687720 complement(2457854..2459269) 1 NC_008781.1 functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN 2459269 4687720 Pnap_2324 Polaromonas naphthalenivorans CJ2 nitrogenase molybdenum-cofactor biosynthesis protein NifN YP_982553.1 2457854 R 365044 CDS YP_982554.1 121605225 4687799 complement(2459297..2460805) 1 NC_008781.1 functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE 2460805 4687799 Pnap_2325 Polaromonas naphthalenivorans CJ2 nitrogenase molybdenum-cofactor biosynthesis protein NifE YP_982554.1 2459297 R 365044 CDS YP_982555.1 121605226 4688435 2461213..2461749 1 NC_008781.1 PFAM: heat shock protein DnaJ domain protein; KEGG: syw:SYNW1328 hypothetical protein; heat shock protein DnaJ domain-containing protein 2461749 4688435 Pnap_2326 Polaromonas naphthalenivorans CJ2 heat shock protein DnaJ domain-containing protein YP_982555.1 2461213 D 365044 CDS YP_982556.1 121605227 4689514 complement(2462771..2463673) 1 NC_008781.1 PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: rfr:Rfer_1169 H+-transporting two-sector ATPase, gamma subunit; H+-transporting two-sector ATPase subunit gamma 2463673 4689514 Pnap_2328 Polaromonas naphthalenivorans CJ2 H+-transporting two-sector ATPase subunit gamma YP_982556.1 2462771 R 365044 CDS YP_982557.1 121605228 4687923 complement(2463670..2465232) 1 NC_008781.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 2465232 4687923 Pnap_2329 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit alpha YP_982557.1 2463670 R 365044 CDS YP_982558.1 121605229 4687023 complement(2465229..2466044) 1 NC_008781.1 PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: rfr:Rfer_1167 H+-transporting two-sector ATPase, B/B' subunit; H+-transporting two-sector ATPase subunit B/B' 2466044 4687023 Pnap_2330 Polaromonas naphthalenivorans CJ2 H+-transporting two-sector ATPase subunit B/B' YP_982558.1 2465229 R 365044 CDS YP_982559.1 121605230 4687645 complement(2466048..2466329) 1 NC_008781.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 2466329 4687645 Pnap_2331 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit C YP_982559.1 2466048 R 365044 CDS YP_982560.1 121605231 4689459 complement(2466371..2467081) 1 NC_008781.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 2467081 4689459 Pnap_2332 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit A YP_982560.1 2466371 R 365044 CDS YP_982561.1 121605232 4688355 complement(2467071..2467391) 1 NC_008781.1 KEGG: rfr:Rfer_1164 hypothetical protein; hypothetical protein 2467391 4688355 Pnap_2333 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982561.1 2467071 R 365044 CDS YP_982562.1 121605233 4687453 complement(2467378..2467713) 1 NC_008781.1 TIGRFAM: F0F1-ATPase subunit, putative; KEGG: rfr:Rfer_1163 F0F1-ATPase subunit, putative; F0F1-ATPase 2467713 4687453 Pnap_2334 Polaromonas naphthalenivorans CJ2 F0F1-ATPase YP_982562.1 2467378 R 365044 CDS YP_982563.1 121605234 4686423 complement(2467706..2468101) 1 NC_008781.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 2468101 4686423 Pnap_2335 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit epsilon YP_982563.1 2467706 R 365044 CDS YP_982564.1 121605235 4686297 complement(2468085..2469509) 1 NC_008781.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 2469509 4686297 Pnap_2336 Polaromonas naphthalenivorans CJ2 F0F1 ATP synthase subunit beta YP_982564.1 2468085 R 365044 CDS YP_982565.1 121605236 4686554 complement(2469780..2470259) 1 NC_008781.1 KEGG: rpa:RPA1927 hypothetical protein; hypothetical protein 2470259 4686554 Pnap_2337 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982565.1 2469780 R 365044 CDS YP_982566.1 121605237 4686187 complement(2470294..2472009) 1 NC_008781.1 PFAM: AAA ATPase, central domain protein; KEGG: mca:MCA0262 ATPase, AAA family; ATPase central domain-containing protein 2472009 4686187 Pnap_2338 Polaromonas naphthalenivorans CJ2 ATPase central domain-containing protein YP_982566.1 2470294 R 365044 CDS YP_982567.1 121605238 4686593 complement(2472032..2472520) 1 NC_008781.1 KEGG: bxe:Bxe_B1469 hypothetical protein; hypothetical protein 2472520 4686593 Pnap_2339 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982567.1 2472032 R 365044 CDS YP_982568.1 121605239 4686639 complement(2472569..2472808) 1 NC_008781.1 KEGG: mca:MCA0224 hypothetical protein; hypothetical protein 2472808 4686639 Pnap_2340 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982568.1 2472569 R 365044 CDS YP_982569.1 121605240 4686239 complement(2472836..2473153) 1 NC_008781.1 KEGG: bxe:Bxe_B1468 hypothetical protein; hypothetical protein 2473153 4686239 Pnap_2341 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982569.1 2472836 R 365044 CDS YP_982570.1 121605241 4686662 complement(2473156..2473503) 1 NC_008781.1 PFAM: ferredoxin; KEGG: rpe:RPE_1938 ferredoxin; ferredoxin 2473503 4686662 Pnap_2342 Polaromonas naphthalenivorans CJ2 ferredoxin YP_982570.1 2473156 R 365044 CDS YP_982571.1 121605242 4686247 complement(2473589..2475148) 1 NC_008781.1 KEGG: bxe:Bxe_B1467 nitrogenase, molybdenum-iron protein beta chain(NifK); TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase, component 1; nitrogenase molybdenum-iron protein subunit beta 2475148 4686247 Pnap_2343 Polaromonas naphthalenivorans CJ2 nitrogenase molybdenum-iron protein subunit beta YP_982571.1 2473589 R 365044 CDS YP_982572.1 121605243 4686692 complement(2475245..2476708) 1 NC_008781.1 KEGG: bxe:Bxe_B1466 nitrogenase, molybdenum-iron protein alpha chain(NifD); TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1; nitrogenase molybdenum-iron protein subunit alpha 2476708 4686692 Pnap_2344 Polaromonas naphthalenivorans CJ2 nitrogenase molybdenum-iron protein subunit alpha YP_982572.1 2475245 R 365044 CDS YP_982573.1 121605244 4687210 complement(2476797..2477687) 1 NC_008781.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase 2477687 nifH 4687210 nifH Polaromonas naphthalenivorans CJ2 nitrogenase reductase YP_982573.1 2476797 R 365044 CDS YP_982574.1 121605245 4687183 2478071..2478499 1 NC_008781.1 PFAM: globin; KEGG: bxe:Bxe_B1464 putative globin; globin 2478499 4687183 Pnap_2346 Polaromonas naphthalenivorans CJ2 globin YP_982574.1 2478071 D 365044 CDS YP_982575.1 121605246 4687155 2478554..2479162 1 NC_008781.1 KEGG: bxe:Bxe_B1463 hypothetical protein; hypothetical protein 2479162 4687155 Pnap_2347 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982575.1 2478554 D 365044 CDS YP_982576.1 121605247 4687034 2479183..2479632 1 NC_008781.1 PFAM: Ankyrin; KEGG: bxe:Bxe_B1462 putative ankyrin repeat protein; ankyrin 2479632 4687034 Pnap_2348 Polaromonas naphthalenivorans CJ2 ankyrin YP_982576.1 2479183 D 365044 CDS YP_982577.1 121605248 4687024 2479626..2481320 1 NC_008781.1 KEGG: mca:MCA0222 hypothetical protein; hypothetical protein 2481320 4687024 Pnap_2349 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982577.1 2479626 D 365044 CDS YP_982578.1 121605249 4687017 2481317..2482084 1 NC_008781.1 PFAM: Ankyrin; SMART: Rhodanese domain protein; KEGG: bxe:Bxe_B1461 putative ankyrin repeat protein; ankyrin 2482084 4687017 Pnap_2350 Polaromonas naphthalenivorans CJ2 ankyrin YP_982578.1 2481317 D 365044 CDS YP_982579.1 121605250 4686966 2482095..2482523 1 NC_008781.1 TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: bxe:Bxe_B1460 nitrogenase-associated protein; nitrogenase-associated protein 2482523 4686966 Pnap_2351 Polaromonas naphthalenivorans CJ2 nitrogenase-associated protein YP_982579.1 2482095 D 365044 CDS YP_982580.1 121605251 4686949 2482538..2482789 1 NC_008781.1 TIGRFAM: putative regulatory protein, FmdB family; KEGG: bxe:Bxe_B1459 hypothetical protein; FmdB family regulatory protein 2482789 4686949 Pnap_2352 Polaromonas naphthalenivorans CJ2 FmdB family regulatory protein YP_982580.1 2482538 D 365044 CDS YP_982581.1 121605252 4686925 2482789..2483226 1 NC_008781.1 PFAM: OsmC family protein; KEGG: lpp:lpp1954 hypothetical protein; OsmC family protein 2483226 4686925 Pnap_2353 Polaromonas naphthalenivorans CJ2 OsmC family protein YP_982581.1 2482789 D 365044 CDS YP_982582.1 121605253 4686860 2483223..2483468 1 NC_008781.1 hypothetical protein 2483468 4686860 Pnap_2354 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982582.1 2483223 D 365044 CDS YP_982583.1 121605254 4686847 complement(2483616..2483831) 1 NC_008781.1 KEGG: pol:Bpro_4893 hypothetical protein; hypothetical protein 2483831 4686847 Pnap_2355 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982583.1 2483616 R 365044 CDS YP_982584.1 121605255 4687332 complement(2483828..2484415) 1 NC_008781.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2484415 4687332 Pnap_2356 Polaromonas naphthalenivorans CJ2 RNA polymerase sigma factor YP_982584.1 2483828 R 365044 CDS YP_982585.1 121605256 4686857 2484477..2484995 1 NC_008781.1 PFAM: Redoxin domain protein; KEGG: tbd:Tbd_0272 thioredoxin family protein; redoxin domain-containing protein 2484995 4686857 Pnap_2357 Polaromonas naphthalenivorans CJ2 redoxin domain-containing protein YP_982585.1 2484477 D 365044 CDS YP_982586.1 121605257 4687168 2485143..2485427 1 NC_008781.1 KEGG: cvi:CV3512 probable signal peptide protein; putative signal peptide protein 2485427 4687168 Pnap_2358 Polaromonas naphthalenivorans CJ2 putative signal peptide protein YP_982586.1 2485143 D 365044 CDS YP_982587.1 121605258 4687423 2485433..2486368 1 NC_008781.1 PFAM: protein of unknown function DUF692; KEGG: cps:CPS_0811 hypothetical protein; hypothetical protein 2486368 4687423 Pnap_2359 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982587.1 2485433 D 365044 CDS YP_982588.1 121605259 4687219 2486365..2487150 1 NC_008781.1 KEGG: cps:CPS_0810 hypothetical protein; hypothetical protein 2487150 4687219 Pnap_2360 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982588.1 2486365 D 365044 CDS YP_982589.1 121605260 4687223 2487168..2487650 1 NC_008781.1 PFAM: DoxX family protein; KEGG: cps:CPS_0809 DoxD family protein; DoxX family protein 2487650 4687223 Pnap_2361 Polaromonas naphthalenivorans CJ2 DoxX family protein YP_982589.1 2487168 D 365044 CDS YP_982590.1 121605261 4687229 complement(2487776..2488543) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2780 ABC transporter related; ABC transporter-like protein 2488543 4687229 Pnap_2362 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982590.1 2487776 R 365044 CDS YP_982591.1 121605262 4687486 complement(2488567..2489586) 1 NC_008781.1 PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein; transport system permease 2489586 4687486 Pnap_2363 Polaromonas naphthalenivorans CJ2 transport system permease YP_982591.1 2488567 R 365044 CDS YP_982592.1 121605263 4687493 complement(2489583..2490449) 1 NC_008781.1 PFAM: periplasmic binding protein; KEGG: pol:Bpro_2782 periplasmic binding protein; periplasmic-binding protein 2490449 4687493 Pnap_2364 Polaromonas naphthalenivorans CJ2 periplasmic-binding protein YP_982592.1 2489583 R 365044 CDS YP_982593.1 121605264 4687740 complement(2490446..2491039) 1 NC_008781.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: pol:Bpro_2783 cobalbumin biosynthesis enzyme; cobalbumin biosynthesis protein 2491039 4687740 Pnap_2365 Polaromonas naphthalenivorans CJ2 cobalbumin biosynthesis protein YP_982593.1 2490446 R 365044 CDS YP_982594.1 121605265 4687728 complement(2491032..2491883) 1 NC_008781.1 PFAM: periplasmic binding protein; KEGG: pol:Bpro_2784 periplasmic binding protein; periplasmic-binding protein 2491883 4687728 Pnap_2366 Polaromonas naphthalenivorans CJ2 periplasmic-binding protein YP_982594.1 2491032 R 365044 CDS YP_982595.1 121605266 4687688 complement(2491876..2493210) 1 NC_008781.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2785 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 2493210 4687688 Pnap_2367 Polaromonas naphthalenivorans CJ2 cobyrinic acid a,c-diamide synthase YP_982595.1 2491876 R 365044 CDS YP_982596.1 121605267 4687676 complement(2493213..2495066) 1 NC_008781.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cvi:CV0494 probable outer membrane receptor protein; TonB-dependent receptor, plug 2495066 4687676 Pnap_2368 Polaromonas naphthalenivorans CJ2 TonB-dependent receptor, plug YP_982596.1 2493213 R 365044 CDS YP_982597.1 121605268 4687653 2495476..2495724 1 NC_008781.1 KEGG: pol:Bpro_2787 hypothetical protein; hypothetical protein 2495724 4687653 Pnap_2369 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982597.1 2495476 D 365044 CDS YP_982598.1 121605269 4687993 2495721..2496053 1 NC_008781.1 PFAM: protein of unknown function DUF710; KEGG: pol:Bpro_2788 protein of unknown function DUF710; hypothetical protein 2496053 4687993 Pnap_2370 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982598.1 2495721 D 365044 CDS YP_982599.1 121605270 4688062 2496363..2497178 1 NC_008781.1 PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_2628 protein of unknown function DUF81; hypothetical protein 2497178 4688062 Pnap_2371 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982599.1 2496363 D 365044 CDS YP_982600.1 121605271 4688077 complement(2497205..2497717) 1 NC_008781.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2497717 4688077 Pnap_2372 Polaromonas naphthalenivorans CJ2 ribonuclease activity regulator protein RraA YP_982600.1 2497205 R 365044 CDS YP_982601.1 121605272 4688102 2497957..2498361 1 NC_008781.1 PFAM: SWIB/MDM2 domain protein; KEGG: pol:Bpro_2811 SWIB complex, BAF60b; SWIB/MDM2 domain-containing protein 2498361 4688102 Pnap_2373 Polaromonas naphthalenivorans CJ2 SWIB/MDM2 domain-containing protein YP_982601.1 2497957 D 365044 CDS YP_982602.1 121605273 4688124 complement(2498541..2499395) 1 NC_008781.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: pol:Bpro_2174 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B 2499395 4688124 Pnap_2374 Polaromonas naphthalenivorans CJ2 extradiol ring-cleavage dioxygenase III subunit B YP_982602.1 2498541 R 365044 CDS YP_982603.1 121605274 4688156 2499733..2501466 1 NC_008781.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_2173 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase 2501466 4688156 Pnap_2375 Polaromonas naphthalenivorans CJ2 polyhydroxyalkanoate depolymerase YP_982603.1 2499733 D 365044 CDS YP_982604.1 121605275 4688207 2501515..2502210 1 NC_008781.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: pol:Bpro_2170 electron transport complex, RnfABCDGE type, B subunit; RnfABCDGE type electron transport complex subunit B 2502210 4688207 Pnap_2376 Polaromonas naphthalenivorans CJ2 RnfABCDGE type electron transport complex subunit B YP_982604.1 2501515 D 365044 CDS YP_982605.1 121605276 4688629 2502203..2505577 1 NC_008781.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mxa:MXAN_2317 sensory box histidine kinase/response regulator; multi-sensor hybrid histidine kinase 2505577 4688629 Pnap_2377 Polaromonas naphthalenivorans CJ2 multi-sensor hybrid histidine kinase YP_982605.1 2502203 D 365044 CDS YP_982606.1 121605277 4688730 complement(2505629..2506117) 1 NC_008781.1 KEGG: pol:Bpro_2168 lactoylglutathione lyase; lactoylglutathione lyase 2506117 4688730 Pnap_2378 Polaromonas naphthalenivorans CJ2 lactoylglutathione lyase YP_982606.1 2505629 R 365044 CDS YP_982607.1 121605278 4688428 complement(2506114..2508162) 1 NC_008781.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_2167 carbamoyl-phosphate synthase L chain, ATP-binding; acetyl-CoA carboxylase, biotin carboxylase 2508162 4688428 Pnap_2379 Polaromonas naphthalenivorans CJ2 acetyl-CoA carboxylase, biotin carboxylase YP_982607.1 2506114 R 365044 CDS YP_982608.1 121605279 4688527 complement(2508212..2508973) 1 NC_008781.1 PFAM: protein of unknown function DUF218; KEGG: rme:Rmet_4675 protein of unknown function DUF218; hypothetical protein 2508973 4688527 Pnap_2380 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982608.1 2508212 R 365044 CDS YP_982609.1 121605280 4688520 complement(2509011..2510543) 1 NC_008781.1 PFAM: carboxyl transferase; KEGG: pol:Bpro_2164 carboxyl transferase; carboxyl transferase 2510543 4688520 Pnap_2381 Polaromonas naphthalenivorans CJ2 carboxyl transferase YP_982609.1 2509011 R 365044 CDS YP_982610.1 121605281 4688516 complement(2510593..2511597) 1 NC_008781.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 2511597 4688516 Pnap_2382 Polaromonas naphthalenivorans CJ2 arginine/ornithine transport system ATPase YP_982610.1 2510593 R 365044 CDS YP_982611.1 121605282 4688506 complement(2511612..2513768) 1 NC_008781.1 MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 2513768 4688506 Pnap_2383 Polaromonas naphthalenivorans CJ2 methylmalonyl-CoA mutase YP_982611.1 2511612 R 365044 CDS YP_982612.1 121605283 4688494 2513937..2514572 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2160 transcriptional regulator, GntR family; GntR family transcriptional regulator 2514572 4688494 Pnap_2384 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_982612.1 2513937 D 365044 CDS YP_982613.1 121605284 4688474 complement(2514596..2516164) 1 NC_008781.1 PFAM: SpoVR family protein; KEGG: pol:Bpro_2159 SpoVR; SpoVR family protein 2516164 4688474 Pnap_2385 Polaromonas naphthalenivorans CJ2 SpoVR family protein YP_982613.1 2514596 R 365044 CDS YP_982614.1 121605285 4688464 complement(2516161..2517435) 1 NC_008781.1 PFAM: protein of unknown function DUF444; KEGG: pol:Bpro_2158 protein of unknown function DUF444; hypothetical protein 2517435 4688464 Pnap_2386 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982614.1 2516161 R 365044 CDS YP_982615.1 121605286 4688441 complement(2517498..2519420) 1 NC_008781.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: pol:Bpro_2157 putative serine protein kinase, PrkA; putative serine protein kinase PrkA 2519420 4688441 Pnap_2387 Polaromonas naphthalenivorans CJ2 putative serine protein kinase PrkA YP_982615.1 2517498 R 365044 CDS YP_982616.1 121605287 4688401 complement(2519610..2520623) 1 NC_008781.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_2153 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A 2520623 4688401 Pnap_2388 Polaromonas naphthalenivorans CJ2 tRNA-dihydrouridine synthase A YP_982616.1 2519610 R 365044 CDS YP_982617.1 121605288 4688378 2520806..2522605 1 NC_008781.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: pol:Bpro_2152 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 2522605 4688378 Pnap_2389 Polaromonas naphthalenivorans CJ2 peptidase M14, carboxypeptidase A YP_982617.1 2520806 D 365044 CDS YP_982618.1 121605289 4688776 2522783..2523172 1 NC_008781.1 KEGG: pol:Bpro_2151 hypothetical protein; hypothetical protein 2523172 4688776 Pnap_2390 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982618.1 2522783 D 365044 CDS YP_982619.1 121605290 4688778 complement(2523320..2524729) 1 NC_008781.1 KEGG: rfr:Rfer_2580 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase 2524729 4688778 Pnap_2391 Polaromonas naphthalenivorans CJ2 replicative DNA helicase YP_982619.1 2523320 R 365044 CDS YP_982620.1 121605291 4688798 complement(2524938..2525390) 1 NC_008781.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 2525390 rplI 4688798 rplI Polaromonas naphthalenivorans CJ2 50S ribosomal protein L9 YP_982620.1 2524938 R 365044 CDS YP_982621.1 121605292 4688826 complement(2525403..2525687) 1 NC_008781.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 2525687 rpsR 4688826 rpsR Polaromonas naphthalenivorans CJ2 30S ribosomal protein S18 YP_982621.1 2525403 R 365044 CDS YP_982622.1 121605293 4688616 complement(2525698..2526015) 1 NC_008781.1 KEGG: pol:Bpro_3036 putative primosomal replication protein; putative primosomal replication protein 2526015 4688616 Pnap_2394 Polaromonas naphthalenivorans CJ2 putative primosomal replication protein YP_982622.1 2525698 R 365044 CDS YP_982623.1 121605294 4688946 complement(2526064..2526429) 1 NC_008781.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2526429 rpsF 4688946 rpsF Polaromonas naphthalenivorans CJ2 30S ribosomal protein S6 YP_982623.1 2526064 R 365044 CDS YP_982624.1 121605295 4689815 complement(2526501..2528681) 1 NC_008781.1 PFAM: Na+/solute symporter; KEGG: pol:Bpro_3039 Na+/solute symporter; Na+/solute symporter 2528681 4689815 Pnap_2396 Polaromonas naphthalenivorans CJ2 Na+/solute symporter YP_982624.1 2526501 R 365044 CDS YP_982625.1 121605296 4686960 complement(2528684..2528944) 1 NC_008781.1 KEGG: pol:Bpro_3040 hypothetical protein; hypothetical protein 2528944 4686960 Pnap_2397 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982625.1 2528684 R 365044 CDS YP_982626.1 121605297 4686256 complement(2528931..2529794) 1 NC_008781.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_4146 tetratricopeptide TPR_2; hypothetical protein 2529794 4686256 Pnap_2398 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982626.1 2528931 R 365044 CDS YP_982627.1 121605298 4687043 complement(2529971..2532370) 1 NC_008781.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2532370 4687043 Pnap_2399 Polaromonas naphthalenivorans CJ2 phosphoenolpyruvate synthase YP_982627.1 2529971 R 365044 CDS YP_982628.1 121605299 4686867 2532550..2533371 1 NC_008781.1 PFAM: protein of unknown function DUF299; KEGG: pol:Bpro_3043 protein of unknown function DUF299; hypothetical protein 2533371 4686867 Pnap_2400 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982628.1 2532550 D 365044 CDS YP_982629.1 121605300 4686328 2533623..2534195 1 NC_008781.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_3044 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 2534195 4686328 Pnap_2401 Polaromonas naphthalenivorans CJ2 alkyl hydroperoxide reductase YP_982629.1 2533623 D 365044 CDS YP_982630.1 121605301 4686500 2534278..2535876 1 NC_008781.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin; KEGG: pol:Bpro_3045 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2535876 4686500 Pnap_2402 Polaromonas naphthalenivorans CJ2 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_982630.1 2534278 D 365044 CDS YP_982631.1 121605302 4686575 complement(2535955..2536257) 1 NC_008781.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: dar:Daro_1473 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 2536257 4686575 Pnap_2403 Polaromonas naphthalenivorans CJ2 antibiotic biosynthesis monooxygenase YP_982631.1 2535955 R 365044 CDS YP_982632.1 121605303 4686621 complement(2536335..2536979) 1 NC_008781.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: mca:MCA1303 glutathione S-transferase; glutathione S-transferase domain-containing protein 2536979 4686621 Pnap_2404 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_982632.1 2536335 R 365044 CDS YP_982633.1 121605304 4686770 2537271..2537618 1 NC_008781.1 KEGG: reu:Reut_C6168 hypothetical protein; hypothetical protein 2537618 4686770 Pnap_2405 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982633.1 2537271 D 365044 CDS YP_982634.1 121605305 4686840 2537615..2538601 1 NC_008781.1 KEGG: reu:Reut_C6169 putative poly-gamma-glutamate biosynthesis enzyme; putative poly-gamma-glutamate biosynthesis enzyme 2538601 4686840 Pnap_2406 Polaromonas naphthalenivorans CJ2 putative poly-gamma-glutamate biosynthesis enzyme YP_982634.1 2537615 D 365044 CDS YP_982635.1 121605306 4687013 2538902..2540155 1 NC_008781.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_2361 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 2540155 4687013 Pnap_2407 Polaromonas naphthalenivorans CJ2 DEAD/DEAH box helicase YP_982635.1 2538902 D 365044 CDS YP_982636.1 121605307 4686924 2540291..2542936 1 NC_008781.1 PFAM: pentapeptide repeat protein; KEGG: gvi:gll2892 hypothetical protein; pentapeptide repeat-containing protein 2542936 4686924 Pnap_2408 Polaromonas naphthalenivorans CJ2 pentapeptide repeat-containing protein YP_982636.1 2540291 D 365044 CDS YP_982637.1 121605308 4686892 2543124..2545781 1 NC_008781.1 PFAM: pentapeptide repeat protein; KEGG: tel:tll0709 hypothetical protein; pentapeptide repeat-containing protein 2545781 4686892 Pnap_2409 Polaromonas naphthalenivorans CJ2 pentapeptide repeat-containing protein YP_982637.1 2543124 D 365044 CDS YP_982638.1 121605309 4687002 2545878..2549153 1 NC_008781.1 PFAM: NHL repeat containing protein; KEGG: bur:Bcep18194_C7374 YadA/haemagluttinin like protein; NHL repeat-containing protein 2549153 4687002 Pnap_2410 Polaromonas naphthalenivorans CJ2 NHL repeat-containing protein YP_982638.1 2545878 D 365044 CDS YP_982639.1 121605310 4687053 complement(2549257..2549565) 1 NC_008781.1 KEGG: pol:Bpro_2360 hypothetical protein; hypothetical protein 2549565 4687053 Pnap_2411 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982639.1 2549257 R 365044 CDS YP_982640.1 121605311 4687027 complement(2549679..2550227) 1 NC_008781.1 PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_2358 DsbA oxidoreductase; DSBA oxidoreductase 2550227 4687027 Pnap_2412 Polaromonas naphthalenivorans CJ2 DSBA oxidoreductase YP_982640.1 2549679 R 365044 CDS YP_982641.1 121605312 4687321 2550396..2550608 1 NC_008781.1 hypothetical protein 2550608 4687321 Pnap_2413 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982641.1 2550396 D 365044 CDS YP_982642.1 121605313 4686973 complement(2550642..2551019) 1 NC_008781.1 KEGG: pol:Bpro_2356 hypothetical protein; hypothetical protein 2551019 4686973 Pnap_2414 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982642.1 2550642 R 365044 CDS YP_982643.1 121605314 4686938 complement(2551442..2551666) 1 NC_008781.1 PFAM: TOBE domain protein; KEGG: rfr:Rfer_1774 molybdenum-pterin binding domain; TOBE domain-containing protein 2551666 4686938 Pnap_2415 Polaromonas naphthalenivorans CJ2 TOBE domain-containing protein YP_982643.1 2551442 R 365044 CDS YP_982644.1 121605315 4686855 complement(2551777..2552589) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1775 ABC transporter related; ABC transporter-like protein 2552589 4686855 Pnap_2416 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982644.1 2551777 R 365044 CDS YP_982645.1 121605316 4686836 complement(2552599..2553501) 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1776 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2553501 4686836 Pnap_2417 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_982645.1 2552599 R 365044 CDS YP_982646.1 121605317 4687458 complement(2553523..2554686) 1 NC_008781.1 catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 2554686 4687458 Pnap_2418 Polaromonas naphthalenivorans CJ2 alkanesulfonate monooxygenase YP_982646.1 2553523 R 365044 CDS YP_982647.1 121605318 4687479 complement(2554706..2555755) 1 NC_008781.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_1778 ABC transporter, substrate-binding protein, aliphatic sulphonates; aliphatic sulfonates ABC transporter substrate-binding protein 2555755 4687479 Pnap_2419 Polaromonas naphthalenivorans CJ2 aliphatic sulfonates ABC transporter substrate-binding protein YP_982647.1 2554706 R 365044 CDS YP_982648.1 121605319 4687537 complement(2555781..2556803) 1 NC_008781.1 KEGG: reu:Reut_A1977 ABC transporter, substrate-binding protein, aliphatic sulphonates; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NLPA lipoprotein; Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3; aliphatic sulfonates ABC transporter substrate-binding protein 2556803 4687537 Pnap_2420 Polaromonas naphthalenivorans CJ2 aliphatic sulfonates ABC transporter substrate-binding protein YP_982648.1 2555781 R 365044 CDS YP_982649.1 121605320 4687702 complement(2556926..2557525) 1 NC_008781.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: rfr:Rfer_1780 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2557525 4687702 Pnap_2421 Polaromonas naphthalenivorans CJ2 NADPH-dependent FMN reductase YP_982649.1 2556926 R 365044 CDS YP_982650.1 121605321 4688329 complement(2557586..2558617) 1 NC_008781.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2345 thiosulphate-binding protein; sulfate ABC transporter substrate-binding protein 2558617 4688329 Pnap_2422 Polaromonas naphthalenivorans CJ2 sulfate ABC transporter substrate-binding protein YP_982650.1 2557586 R 365044 CDS YP_982651.1 121605322 4687639 2558764..2559045 1 NC_008781.1 PFAM: Fe(II) trafficking protein YggX; KEGG: pol:Bpro_2344 Fe(II) trafficking protein YggX; hypothetical protein 2559045 4687639 Pnap_2423 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982651.1 2558764 D 365044 CDS YP_982652.1 121605323 4687602 2559055..2560968 1 NC_008781.1 PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: pol:Bpro_2343 protein of unknown function DUF752; hypothetical protein 2560968 4687602 Pnap_2424 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982652.1 2559055 D 365044 CDS YP_982653.1 121605324 4688022 complement(2561038..2562273) 1 NC_008781.1 KEGG: pol:Bpro_2341 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2562273 4688022 Pnap_2425 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_982653.1 2561038 R 365044 CDS YP_982654.1 121605325 4688050 2562506..2563297 1 NC_008781.1 PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_2340 protein of unknown function DUF81; hypothetical protein 2563297 4688050 Pnap_2426 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982654.1 2562506 D 365044 CDS YP_982655.1 121605326 4688129 2563389..2565197 1 NC_008781.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pol:Bpro_2339 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like; nitrite/sulfite reductase hemoprotein subunit beta 2565197 4688129 Pnap_2427 Polaromonas naphthalenivorans CJ2 nitrite/sulfite reductase hemoprotein subunit beta YP_982655.1 2563389 D 365044 CDS YP_982656.1 121605327 4687909 2565236..2565637 1 NC_008781.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: pol:Bpro_2338 hypothetical protein; hypothetical protein 2565637 4687909 Pnap_2428 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982656.1 2565236 D 365044 CDS YP_982657.1 121605328 4688285 2565649..2566443 1 NC_008781.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pol:Bpro_2337 phosphoadenylyl-sulfate reductase (thioredoxin); phosphoadenylyl-sulfate reductase 2566443 4688285 Pnap_2429 Polaromonas naphthalenivorans CJ2 phosphoadenylyl-sulfate reductase YP_982657.1 2565649 D 365044 CDS YP_982658.1 121605329 4688302 2566440..2567393 1 NC_008781.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 2567393 4688302 Pnap_2430 Polaromonas naphthalenivorans CJ2 sulfate adenylyltransferase subunit 2 YP_982658.1 2566440 D 365044 CDS YP_982659.1 121605330 4688518 2567393..2568709 1 NC_008781.1 KEGG: pol:Bpro_2335 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; sulfate adenylyltransferase large subunit 2568709 4688518 Pnap_2431 Polaromonas naphthalenivorans CJ2 sulfate adenylyltransferase large subunit YP_982659.1 2567393 D 365044 CDS YP_982660.1 121605331 4688492 2568881..2569210 1 NC_008781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_2334 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 2569210 4688492 Pnap_2432 Polaromonas naphthalenivorans CJ2 4Fe-4S ferredoxin YP_982660.1 2568881 D 365044 CDS YP_982661.1 121605332 4688463 2569288..2570388 1 NC_008781.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_2333 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2570388 4688463 Pnap_2433 Polaromonas naphthalenivorans CJ2 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_982661.1 2569288 D 365044 CDS YP_982662.1 121605333 4689050 2570465..2571769 1 NC_008781.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: pol:Bpro_2332 permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 2571769 4689050 Pnap_2434 Polaromonas naphthalenivorans CJ2 cytosine/purines uracil thiamine allantoin permease YP_982662.1 2570465 D 365044 CDS YP_982663.1 121605334 4689073 complement(2571753..2572610) 1 NC_008781.1 KEGG: pol:Bpro_2331 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 2572610 4689073 Pnap_2435 Polaromonas naphthalenivorans CJ2 phosphomethylpyrimidine kinase YP_982663.1 2571753 R 365044 CDS YP_982664.1 121605335 4688479 2573052..2574605 1 NC_008781.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: pol:Bpro_2698 protein of unknown function UPF0031; carbohydrate kinase 2574605 4688479 Pnap_2436 Polaromonas naphthalenivorans CJ2 carbohydrate kinase YP_982664.1 2573052 D 365044 CDS YP_982665.1 121605336 4688481 complement(2574602..2575171) 1 NC_008781.1 PFAM: protein of unknown function YGGT; KEGG: pol:Bpro_2699 protein of unknown function YGGT; hypothetical protein 2575171 4688481 Pnap_2437 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982665.1 2574602 R 365044 CDS YP_982666.1 121605337 4688783 complement(2575213..2577372) 1 NC_008781.1 KEGG: pol:Bpro_2700 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; ribonuclease R 2577372 4688783 Pnap_2438 Polaromonas naphthalenivorans CJ2 ribonuclease R YP_982666.1 2575213 R 365044 CDS YP_982667.1 121605338 4689340 complement(2578044..2579429) 1 NC_008781.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 2579429 rimO 4689340 rimO Polaromonas naphthalenivorans CJ2 30S ribosomal protein S12 methylthiotransferase YP_982667.1 2578044 R 365044 CDS YP_982668.1 121605339 4688793 2579464..2581086 1 NC_008781.1 PFAM: Recombinase; KEGG: ppu:PP_3026 phage recombinase, putative; recombinase 2581086 4688793 Pnap_2440 Polaromonas naphthalenivorans CJ2 recombinase YP_982668.1 2579464 D 365044 CDS YP_982669.1 121605340 4688371 2581460..2581774 1 NC_008781.1 hypothetical protein 2581774 4688371 Pnap_2441 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982669.1 2581460 D 365044 CDS YP_982670.1 121605341 4688973 2581894..2583060 1 NC_008781.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_5696 AAA ATPase, central region; ATPase central domain-containing protein 2583060 4688973 Pnap_2442 Polaromonas naphthalenivorans CJ2 ATPase central domain-containing protein YP_982670.1 2581894 D 365044 CDS YP_982671.1 121605342 4688975 2583057..2585276 1 NC_008781.1 KEGG: pfo:Pfl_5697 hypothetical protein; hypothetical protein 2585276 4688975 Pnap_2443 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982671.1 2583057 D 365044 CDS YP_982672.1 121605343 4689034 2585330..2586121 1 NC_008781.1 KEGG: vpa:VP1081 hypothetical protein; ECF subfamily RNA polymerase sigma-24 factor 2586121 4689034 Pnap_2444 Polaromonas naphthalenivorans CJ2 ECF subfamily RNA polymerase sigma-24 factor YP_982672.1 2585330 D 365044 CDS YP_982673.1 121605344 4689102 2586118..2586711 1 NC_008781.1 KEGG: vpa:VP1082 hypothetical protein; hypothetical protein 2586711 4689102 Pnap_2445 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982673.1 2586118 D 365044 CDS YP_982674.1 121605345 4689128 2586714..2590139 1 NC_008781.1 PFAM: UvrD/REP helicase; protein of unknown function DUF955; KEGG: vpa:VP1083 putative ATP-dependent DNA helicase; UvrD/REP helicase 2590139 4689128 Pnap_2446 Polaromonas naphthalenivorans CJ2 UvrD/REP helicase YP_982674.1 2586714 D 365044 CDS YP_982675.1 121605346 4689132 2590232..2591161 1 NC_008781.1 KEGG: ana:alr7503 unknown protein; hypothetical protein 2591161 4689132 Pnap_2447 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982675.1 2590232 D 365044 CDS YP_982676.1 121605347 4689939 2591158..2592567 1 NC_008781.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ana:alr7504 unknown protein; UBA/THIF-type NAD/FAD-binding protein 2592567 4689939 Pnap_2448 Polaromonas naphthalenivorans CJ2 UBA/THIF-type NAD/FAD-binding protein YP_982676.1 2591158 D 365044 CDS YP_982677.1 121605348 4689790 2592632..2592910 1 NC_008781.1 KEGG: hne:HNE_2548 hypothetical protein; hypothetical protein 2592910 4689790 Pnap_2449 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982677.1 2592632 D 365044 CDS YP_982678.1 121605349 4689822 complement(2594155..2594577) 1 NC_008781.1 KEGG: rfr:Rfer_2538 hypothetical protein; hypothetical protein 2594577 4689822 Pnap_2450 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982678.1 2594155 R 365044 CDS YP_982679.1 121605350 4689173 complement(2595386..2596024) 1 NC_008781.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: eba:ebA1379 maleylpyruvate isomerase; maleylacetoacetate isomerase 2596024 4689173 Pnap_2452 Polaromonas naphthalenivorans CJ2 maleylacetoacetate isomerase YP_982679.1 2595386 R 365044 CDS YP_982680.1 121605351 4689861 complement(2596034..2596735) 1 NC_008781.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA1377 fumarylpyruvate hydrolase; fumarylacetoacetate (FAA) hydrolase 2596735 4689861 Pnap_2453 Polaromonas naphthalenivorans CJ2 fumarylacetoacetate (FAA) hydrolase YP_982680.1 2596034 R 365044 CDS YP_982681.1 121605352 4689045 complement(2596829..2597884) 1 NC_008781.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: eba:ebA1373 gentisate 1,2-dioxygenase; cupin 2597884 4689045 Pnap_2454 Polaromonas naphthalenivorans CJ2 cupin YP_982681.1 2596829 R 365044 CDS YP_982682.1 121605353 4689066 complement(2597903..2598493) 1 NC_008781.1 KEGG: dar:Daro_2767 hemerythrin HHE cation binding region; hemerythrin HHE cation-binding region 2598493 4689066 Pnap_2455 Polaromonas naphthalenivorans CJ2 hemerythrin HHE cation-binding region YP_982682.1 2597903 R 365044 CDS YP_982683.1 121605354 4689048 complement(2598530..2599243) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0990 ABC transporter related; ABC transporter-like protein 2599243 4689048 Pnap_2456 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982683.1 2598530 R 365044 CDS YP_982684.1 121605355 4689488 complement(2599246..2599998) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0989 ABC transporter related; ABC transporter-like protein 2599998 4689488 Pnap_2457 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982684.1 2599246 R 365044 CDS YP_982685.1 121605356 4689529 complement(2599995..2600951) 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_0988 inner-membrane translocator; inner-membrane translocator 2600951 4689529 Pnap_2458 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_982685.1 2599995 R 365044 CDS YP_982686.1 121605357 4689561 complement(2600948..2601874) 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_0987 inner-membrane translocator; inner-membrane translocator 2601874 4689561 Pnap_2459 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_982686.1 2600948 R 365044 CDS YP_982687.1 121605358 4689580 complement(2601874..2603046) 1 NC_008781.1 KEGG: pol:Bpro_0986 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2603046 4689580 Pnap_2460 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_982687.1 2601874 R 365044 CDS YP_982688.1 121605359 4689689 complement(2603082..2603396) 1 NC_008781.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B4721 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 2603396 4689689 Pnap_2461 Polaromonas naphthalenivorans CJ2 Rieske (2Fe-2S) domain-containing protein YP_982688.1 2603082 R 365044 CDS YP_982689.1 121605360 4689306 complement(2603406..2603735) 1 NC_008781.1 KEGG: pol:Bpro_0984 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 2603735 4689306 Pnap_2462 Polaromonas naphthalenivorans CJ2 aromatic-ring-hydroxylating dioxygenase subunit beta YP_982689.1 2603406 R 365044 CDS YP_982690.1 121605361 4689722 2604381..2605148 1 NC_008781.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 2605148 4689722 Pnap_2464 Polaromonas naphthalenivorans CJ2 ATP-binding domain-containing protein IstB YP_982690.1 2604381 D 365044 CDS YP_982691.1 121605362 4689860 complement(2605625..2606584) 1 NC_008781.1 PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase; proline dehydrogenase 2606584 4689860 Pnap_2465 Polaromonas naphthalenivorans CJ2 proline dehydrogenase YP_982691.1 2605625 R 365044 CDS YP_982692.1 121605363 4689882 complement(2606589..2607230) 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: transcriptional regulator, GntR family; GntR family transcriptional regulator 2607230 4689882 Pnap_2466 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_982692.1 2606589 R 365044 CDS YP_982693.1 121605364 4689923 complement(2607554..2608363) 1 NC_008781.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B4 IstB transposition helper protein; ATP-binding domain-containing protein IstB 2608363 4689923 Pnap_2467 Polaromonas naphthalenivorans CJ2 ATP-binding domain-containing protein IstB YP_982693.1 2607554 R 365044 CDS YP_982694.1 121605365 4690034 complement(2608360..2609904) 1 NC_008781.1 PFAM: Integrase, catalytic region; KEGG: mxa:MXAN_3613 transposase, IS21 family; integrase catalytic subunit 2609904 4690034 Pnap_2468 Polaromonas naphthalenivorans CJ2 integrase catalytic subunit YP_982694.1 2608360 R 365044 CDS YP_982695.1 121605366 4690211 complement(2609888..2610199) 1 NC_008781.1 hypothetical protein 2610199 4690211 Pnap_2469 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982695.1 2609888 R 365044 CDS YP_982696.1 121605367 4690128 complement(2610519..2610821) 1 NC_008781.1 KEGG: nha:Nham_2790 recombinase; recombinase 2610821 4690128 Pnap_2470 Polaromonas naphthalenivorans CJ2 recombinase YP_982696.1 2610519 R 365044 CDS YP_982697.1 121605368 4690093 complement(2610961..2611353) 1 NC_008781.1 PFAM: transposase IS3/IS911 family protein; KEGG: rfr:Rfer_3061 transposase IS3/IS911; transposase IS3/IS911 family protein 2611353 4690093 Pnap_2471 Polaromonas naphthalenivorans CJ2 transposase IS3/IS911 family protein YP_982697.1 2610961 R 365044 CDS YP_982698.1 121605369 4690069 complement(2611702..2612736) 1 NC_008781.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rfr:Rfer_2266 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 2612736 4690069 Pnap_2472 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_982698.1 2611702 R 365044 CDS YP_982699.1 121605370 4690042 2612897..2613175 1 NC_008781.1 KEGG: hypothetical protein; hypothetical protein 2613175 4690042 Pnap_2473 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982699.1 2612897 D 365044 CDS YP_982700.1 121605371 4689298 complement(2613247..2614116) 1 NC_008781.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA5616 probable maleylpyruvate isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 2614116 4689298 Pnap_2474 Polaromonas naphthalenivorans CJ2 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_982700.1 2613247 R 365044 CDS YP_982701.1 121605372 4689600 complement(2614388..2615392) 1 NC_008781.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: eba:ebA1373 gentisate 1,2-dioxygenase; cupin 2615392 4689600 Pnap_2476 Polaromonas naphthalenivorans CJ2 cupin YP_982701.1 2614388 R 365044 CDS YP_982702.1 121605373 4689603 complement(2615493..2616098) 1 NC_008781.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_C1190 glutathione S-transferase (BphK); glutathione S-transferase domain-containing protein 2616098 4689603 Pnap_2477 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_982702.1 2615493 R 365044 CDS YP_982703.1 121605374 4689576 complement(2616304..2616897) 1 NC_008781.1 PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_2632 DsbA oxidoreductase; DSBA oxidoreductase 2616897 4689576 Pnap_2478 Polaromonas naphthalenivorans CJ2 DSBA oxidoreductase YP_982703.1 2616304 R 365044 CDS YP_982704.1 121605375 4689269 complement(2617087..2618124) 1 NC_008781.1 PFAM: dihydrodipicolinate synthetase; KEGG: mmc:Mmcs_1629 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 2618124 4689269 Pnap_2479 Polaromonas naphthalenivorans CJ2 dihydrodipicolinate synthetase YP_982704.1 2617087 R 365044 CDS YP_982705.1 121605376 4689265 complement(2618182..2618817) 1 NC_008781.1 PFAM: OmpW family protein; KEGG: bxe:Bxe_C1185 outer membrane protein (porin), OmpW family; OmpW family protein 2618817 4689265 Pnap_2480 Polaromonas naphthalenivorans CJ2 OmpW family protein YP_982705.1 2618182 R 365044 CDS YP_982706.1 121605377 4689545 complement(2618892..2619800) 1 NC_008781.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmc:Mmcs_1630 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2619800 4689545 Pnap_2481 Polaromonas naphthalenivorans CJ2 glyoxalase/bleomycin resistance protein/dioxygenase YP_982706.1 2618892 R 365044 CDS YP_982707.1 121605378 4689246 complement(2619826..2621277) 1 NC_008781.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mll7197 dehydrogenase; aldehyde dehydrogenase 2621277 4689246 Pnap_2482 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_982707.1 2619826 R 365044 CDS YP_982708.1 121605379 4689496 complement(2621326..2622105) 1 NC_008781.1 Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 2622105 4689496 Pnap_2483 Polaromonas naphthalenivorans CJ2 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase YP_982708.1 2621326 R 365044 CDS YP_982709.1 121605380 4689198 complement(2622169..2622753) 1 NC_008781.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: ssn:SSO_2621 small terminal subunit of phenylpropionate dioxygenase; aromatic-ring-hydroxylating dioxygenase subunit beta 2622753 4689198 Pnap_2484 Polaromonas naphthalenivorans CJ2 aromatic-ring-hydroxylating dioxygenase subunit beta YP_982709.1 2622169 R 365044 CDS YP_982710.1 121605381 4689446 complement(2622768..2624111) 1 NC_008781.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: sbo:SBO_2562 large terminal subunit of phenylpropionate dioxygenase; ring hydroxylating dioxygenase subunit alpha 2624111 4689446 Pnap_2485 Polaromonas naphthalenivorans CJ2 ring hydroxylating dioxygenase subunit alpha YP_982710.1 2622768 R 365044 CDS YP_982711.1 121605382 4689178 complement(2624176..2624514) 1 NC_008781.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: reu:Reut_B4721 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 2624514 4689178 Pnap_2486 Polaromonas naphthalenivorans CJ2 Rieske (2Fe-2S) domain-containing protein YP_982711.1 2624176 R 365044 CDS YP_982712.1 121605383 4689395 complement(2624524..2625009) 1 NC_008781.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: pol:Bpro_0984 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 2625009 4689395 Pnap_2487 Polaromonas naphthalenivorans CJ2 aromatic-ring-hydroxylating dioxygenase subunit beta YP_982712.1 2624524 R 365044 CDS YP_982713.1 121605384 4689077 complement(2625012..2626274) 1 NC_008781.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0983 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 2626274 4689077 Pnap_2488 Polaromonas naphthalenivorans CJ2 Rieske (2Fe-2S) domain-containing protein YP_982713.1 2625012 R 365044 CDS YP_982714.1 121605385 4689106 complement(2626320..2627306) 1 NC_008781.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_0980 oxidoreductase FAD-binding region; oxidoreductase FAD-binding subunit 2627306 4689106 Pnap_2489 Polaromonas naphthalenivorans CJ2 oxidoreductase FAD-binding subunit YP_982714.1 2626320 R 365044 CDS YP_982715.1 121605386 4689134 2627423..2628379 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0979 transcriptional regulator, LysR family; LysR family transcriptional regulator 2628379 4689134 Pnap_2490 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_982715.1 2627423 D 365044 CDS YP_982716.1 121605387 4689368 2628931..2629539 1 NC_008781.1 hypothetical protein 2629539 4689368 Pnap_2491 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982716.1 2628931 D 365044 CDS YP_982717.1 121605388 4689143 2629576..2630334 1 NC_008781.1 hypothetical protein 2630334 4689143 Pnap_2492 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982717.1 2629576 D 365044 CDS YP_982718.1 121605389 4689346 2630331..2630942 1 NC_008781.1 hypothetical protein 2630942 4689346 Pnap_2493 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982718.1 2630331 D 365044 CDS YP_982719.1 121605390 4688948 2630954..2631538 1 NC_008781.1 PFAM: Lytic transglycosylase, catalytic; KEGG: xfa:XFa0002 conjugal transfer protein; lytic transglycosylase catalytic subunit 2631538 4688948 Pnap_2494 Polaromonas naphthalenivorans CJ2 lytic transglycosylase catalytic subunit YP_982719.1 2630954 D 365044 CDS YP_982720.1 121605391 4688941 complement(2631468..2632022) 1 NC_008781.1 hypothetical protein 2632022 4688941 Pnap_2495 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982720.1 2631468 R 365044 CDS YP_982721.1 121605392 4688665 complement(2632055..2632411) 1 NC_008781.1 hypothetical protein 2632411 4688665 Pnap_2496 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982721.1 2632055 R 365044 CDS YP_982722.1 121605393 4688883 2632633..2633598 1 NC_008781.1 PFAM: type II secretion system protein E; KEGG: dps:DPPB12 probable conjugal transfer protein TrbB; type II secretion system protein E 2633598 4688883 Pnap_2497 Polaromonas naphthalenivorans CJ2 type II secretion system protein E YP_982722.1 2632633 D 365044 CDS YP_982723.1 121605394 4688875 2633963..2634217 1 NC_008781.1 hypothetical protein 2634217 4688875 Pnap_2498 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982723.1 2633963 D 365044 CDS YP_982724.1 121605395 4686219 2634497..2635378 1 NC_008781.1 KEGG: tbd:Tbd_0930 hypothetical protein; hypothetical protein 2635378 4686219 Pnap_2499 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982724.1 2634497 D 365044 CDS YP_982725.1 121605396 4688006 complement(2635393..2635536) 1 NC_008781.1 KEGG: eba:ebB17 hypothetical protein; hypothetical protein 2635536 4688006 Pnap_2500 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982725.1 2635393 R 365044 CDS YP_982726.1 121605397 4688682 2635951..2636292 1 NC_008781.1 PFAM: Conjugal transfer protein TrbC; KEGG: ret:RHE_PA00177 conjugal transfer protein C; conjugal transfer protein TrbC 2636292 4688682 Pnap_2501 Polaromonas naphthalenivorans CJ2 conjugal transfer protein TrbC YP_982726.1 2635951 D 365044 CDS YP_982727.1 121605398 4689500 2636319..2636642 1 NC_008781.1 PFAM: Conjugal transfer TrbD family protein; KEGG: atc:AGR_pTi_85 probable TrbD gene; conjugal transfer TrbD family protein 2636642 4689500 Pnap_2502 Polaromonas naphthalenivorans CJ2 conjugal transfer TrbD family protein YP_982727.1 2636319 D 365044 CDS YP_982728.1 121605399 4689677 2636646..2639090 1 NC_008781.1 PFAM: CagE, TrbE, VirB component of type IV transporter system; SMART: AAA ATPase; KEGG: nha:Nham_4566 type IV secretion/conjugal transfer ATPase, VirB4 family; CagE, TrbE, VirB component of type IV transporter system 2639090 4689677 Pnap_2503 Polaromonas naphthalenivorans CJ2 CagE, TrbE, VirB component of type IV transporter system YP_982728.1 2636646 D 365044 CDS YP_982729.1 121605400 4689125 2639249..2639950 1 NC_008781.1 KEGG: nha:Nham_4565 conjugal transfer protein TrbJ; conjugal transfer protein TrbJ 2639950 4689125 Pnap_2504 Polaromonas naphthalenivorans CJ2 conjugal transfer protein TrbJ YP_982729.1 2639249 D 365044 CDS YP_982730.1 121605401 4688367 2639965..2641590 1 NC_008781.1 KEGG: bms:BRA0366 trbL protein; Type IV secretory pathway TrbL components-like protein 2641590 4688367 Pnap_2505 Polaromonas naphthalenivorans CJ2 Type IV secretory pathway TrbL components-like protein YP_982730.1 2639965 D 365044 CDS YP_982731.1 121605402 4687850 2641600..2643099 1 NC_008781.1 hypothetical protein 2643099 4687850 Pnap_2506 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982731.1 2641600 D 365044 CDS YP_982732.1 121605403 4686314 complement(2643196..2644107) 1 NC_008781.1 hypothetical protein 2644107 4686314 Pnap_2507 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982732.1 2643196 R 365044 CDS YP_982733.1 121605404 4686068 complement(2644104..2645297) 1 NC_008781.1 hypothetical protein 2645297 4686068 Pnap_2508 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982733.1 2644104 R 365044 CDS YP_982734.1 121605405 4686081 2645366..2646019 1 NC_008781.1 PFAM: Conjugal transfer protein; KEGG: nha:Nham_4562 conjugal transfer protein; conjugal transfer protein 2646019 4686081 Pnap_2509 Polaromonas naphthalenivorans CJ2 conjugal transfer protein YP_982734.1 2645366 D 365044 CDS YP_982735.1 121605406 4686099 2646379..2647161 1 NC_008781.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bam:Bamb_6630 conjugal transfer protein TrbG/VirB9/CagX; conjugal transfer protein TrbG/VirB9/CagX 2647161 4686099 Pnap_2510 Polaromonas naphthalenivorans CJ2 conjugal transfer protein TrbG/VirB9/CagX YP_982735.1 2646379 D 365044 CDS YP_982736.1 121605407 4686117 2647158..2648630 1 NC_008781.1 PFAM: conjugation TrbI family protein; KEGG: ret:RHE_PA00169 conjugal transfer protein I; conjugation TrbI family protein 2648630 4686117 Pnap_2511 Polaromonas naphthalenivorans CJ2 conjugation TrbI family protein YP_982736.1 2647158 D 365044 CDS YP_982737.1 121605408 4686135 complement(2648780..2649514) 1 NC_008781.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rfr:Rfer_1597 cytochrome c biogenesis protein, transmembrane protein; cytochrome c biogenesis protein transmembrane subunit 2649514 4686135 Pnap_2512 Polaromonas naphthalenivorans CJ2 cytochrome c biogenesis protein transmembrane subunit YP_982737.1 2648780 R 365044 CDS YP_982738.1 121605409 4686533 complement(2649527..2649907) 1 NC_008781.1 PFAM: Thioredoxin domain; KEGG: rfr:Rfer_1598 hypothetical protein; thioredoxin domain-containing protein 2649907 4686533 Pnap_2513 Polaromonas naphthalenivorans CJ2 thioredoxin domain-containing protein YP_982738.1 2649527 R 365044 CDS YP_982739.1 121605410 4686214 2650031..2650564 1 NC_008781.1 KEGG: pol:Bpro_5539 transposase, IS204/IS1001/IS1096/IS1165; hypothetical protein 2650564 4686214 Pnap_2514 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982739.1 2650031 D 365044 CDS YP_982740.1 121605411 4687222 2650603..2651211 1 NC_008781.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_5551 transcriptional regulator, TetR family; TetR family transcriptional regulator 2651211 4687222 Pnap_2515 Polaromonas naphthalenivorans CJ2 TetR family transcriptional regulator YP_982740.1 2650603 D 365044 CDS YP_982741.1 121605412 4688092 2651284..2651871 1 NC_008781.1 KEGG: pol:Bpro_5552 late embryogenesis abundant protein; late embryogenesis abundant protein 2651871 4688092 Pnap_2516 Polaromonas naphthalenivorans CJ2 late embryogenesis abundant protein YP_982741.1 2651284 D 365044 CDS YP_982742.1 121605413 4689403 2651981..2652427 1 NC_008781.1 KEGG: pol:Bpro_5553 hypothetical protein; hypothetical protein 2652427 4689403 Pnap_2517 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982742.1 2651981 D 365044 CDS YP_982743.1 121605414 4690032 2652625..2653311 1 NC_008781.1 KEGG: pol:Bpro_5554 hypothetical protein; hypothetical protein 2653311 4690032 Pnap_2518 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982743.1 2652625 D 365044 CDS YP_982744.1 121605415 4689816 2653326..2655074 1 NC_008781.1 PFAM: ABC-1 domain protein; KEGG: pol:Bpro_5555 ABC-1; hypothetical protein 2655074 4689816 Pnap_2519 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982744.1 2653326 D 365044 CDS YP_982745.1 121605416 4689686 complement(2655495..2657105) 1 NC_008781.1 PFAM: transposase IS66; KEGG: reu:Reut_C6183 transposase IS66; transposase IS66 2657105 4689686 Pnap_2521 Polaromonas naphthalenivorans CJ2 transposase IS66 YP_982745.1 2655495 R 365044 CDS YP_982746.1 121605417 4687658 complement(2657188..2657541) 1 NC_008781.1 PFAM: IS66 Orf2 family protein; KEGG: reu:Reut_C6378 IS66 Orf2 like; IS66 Orf2 family protein 2657541 4687658 Pnap_2522 Polaromonas naphthalenivorans CJ2 IS66 Orf2 family protein YP_982746.1 2657188 R 365044 CDS YP_982747.1 121605418 4690178 complement(2657529..2657966) 1 NC_008781.1 PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_0340 transposase IS3/IS911; transposase IS3/IS911 family protein 2657966 4690178 Pnap_2523 Polaromonas naphthalenivorans CJ2 transposase IS3/IS911 family protein YP_982747.1 2657529 R 365044 CDS YP_982748.1 121605419 4686053 2659689..2660465 1 NC_008781.1 required for the use of phosphonates and phosphite as phosphorus sources; carbon-phosphorus lyase complex accessory protein 2660465 phnP 4686053 phnP Polaromonas naphthalenivorans CJ2 carbon-phosphorus lyase complex accessory protein YP_982748.1 2659689 D 365044 CDS YP_982749.1 121605420 4686349 2660462..2661322 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: tcx:Tcr_2091 hypothetical protein; hypothetical protein 2661322 4686349 Pnap_2525 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982749.1 2660462 D 365044 CDS YP_982750.1 121605421 4686380 complement(2661429..2661728) 1 NC_008781.1 hypothetical protein 2661728 4686380 Pnap_2526 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982750.1 2661429 R 365044 CDS YP_982751.1 121605422 4686101 2661836..2662453 1 NC_008781.1 hypothetical protein 2662453 4686101 Pnap_2527 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982751.1 2661836 D 365044 CDS YP_982752.1 121605423 4686472 2662475..2663851 1 NC_008781.1 hypothetical protein 2663851 4686472 Pnap_2528 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982752.1 2662475 D 365044 CDS YP_982753.1 121605424 4686137 2664051..2665205 1 NC_008781.1 PFAM: domain of unknown function DUF1738; KEGG: reu:Reut_D6521 toprim; hypothetical protein 2665205 4686137 Pnap_2529 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982753.1 2664051 D 365044 CDS YP_982754.1 121605425 4686167 2665222..2667207 1 NC_008781.1 PFAM: TRAG family protein; KEGG: mlo:mlr6395 conjugal transfer protein traG; TRAG family protein 2667207 4686167 Pnap_2530 Polaromonas naphthalenivorans CJ2 TRAG family protein YP_982754.1 2665222 D 365044 CDS YP_982755.1 121605426 4686189 2667227..2667751 1 NC_008781.1 KEGG: ppr:PBPRB1620 hypothetical conjugal transfer protein TraF; conjugal transfer protein TraF 2667751 4686189 Pnap_2531 Polaromonas naphthalenivorans CJ2 conjugal transfer protein TraF YP_982755.1 2667227 D 365044 CDS YP_982756.1 121605427 4686509 complement(2667794..2668369) 1 NC_008781.1 hypothetical protein 2668369 4686509 Pnap_2532 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982756.1 2667794 R 365044 CDS YP_982757.1 121605428 4689979 complement(2668994..2670973) 1 NC_008781.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: gme:Gmet_A3574 relaxase/mobilization nuclease domain; relaxase/mobilization nuclease family protein 2670973 4689979 Pnap_2533 Polaromonas naphthalenivorans CJ2 relaxase/mobilization nuclease family protein YP_982757.1 2668994 R 365044 CDS YP_982758.1 121605429 4690226 2671629..2671898 1 NC_008781.1 hypothetical protein 2671898 4690226 Pnap_2534 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982758.1 2671629 D 365044 CDS YP_982759.1 121605430 4689955 2671898..2672176 1 NC_008781.1 KEGG: hypothetical protein; hypothetical protein 2672176 4689955 Pnap_2535 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982759.1 2671898 D 365044 CDS YP_982760.1 121605431 4690206 complement(2673124..2673738) 1 NC_008781.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: pol:Bpro_2702 polyhydroxyalkanoate synthesis repressor PhaR; polyhydroxyalkonate synthesis repressor PhaR 2673738 4690206 Pnap_2536 Polaromonas naphthalenivorans CJ2 polyhydroxyalkonate synthesis repressor PhaR YP_982760.1 2673124 R 365044 CDS YP_982761.1 121605432 4689692 complement(2674053..2676323) 1 NC_008781.1 KEGG: pol:Bpro_2703 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 2676323 4689692 Pnap_2537 Polaromonas naphthalenivorans CJ2 (p)ppGpp synthetase I SpoT/RelA YP_982761.1 2674053 R 365044 CDS YP_982762.1 121605433 4686052 complement(2676354..2677274) 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_2704 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2677274 4686052 Pnap_2538 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold protein YP_982762.1 2676354 R 365044 CDS YP_982763.1 121605434 4686072 2677400..2678182 1 NC_008781.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 2678182 4686072 Pnap_2539 Polaromonas naphthalenivorans CJ2 3-hydroxybutyrate dehydrogenase YP_982763.1 2677400 D 365044 CDS YP_982764.1 121605435 4686350 complement(2678219..2679064) 1 NC_008781.1 PFAM: N-formylglutamate amidohydrolase; KEGG: pol:Bpro_2708 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 2679064 4686350 Pnap_2540 Polaromonas naphthalenivorans CJ2 N-formylglutamate amidohydrolase YP_982764.1 2678219 R 365044 CDS YP_982765.1 121605436 4686388 2679318..2679908 1 NC_008781.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: pol:Bpro_2709 OmpA-like transmembrane region; OmpA domain-containing protein 2679908 4686388 Pnap_2541 Polaromonas naphthalenivorans CJ2 OmpA domain-containing protein YP_982765.1 2679318 D 365044 CDS YP_982766.1 121605437 4686499 2680164..2680613 1 NC_008781.1 PFAM: transmembrane pair domain protein; KEGG: pol:Bpro_2711 transmembrane pair; transmembrane pair domain-containing protein 2680613 4686499 Pnap_2542 Polaromonas naphthalenivorans CJ2 transmembrane pair domain-containing protein YP_982766.1 2680164 D 365044 CDS YP_982767.1 121605438 4686461 complement(2680622..2681437) 1 NC_008781.1 PFAM: metallophosphoesterase; KEGG: rfr:Rfer_2358 metallophosphoesterase; metallophosphoesterase 2681437 4686461 Pnap_2543 Polaromonas naphthalenivorans CJ2 metallophosphoesterase YP_982767.1 2680622 R 365044 CDS YP_982768.1 121605439 4686438 complement(2681445..2682416) 1 NC_008781.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: bpa:BPP3398 hypothetical protein; diacylglycerol kinase catalytic subunit 2682416 4686438 Pnap_2544 Polaromonas naphthalenivorans CJ2 diacylglycerol kinase catalytic subunit YP_982768.1 2681445 R 365044 CDS YP_982769.1 121605440 4686147 complement(2682441..2683166) 1 NC_008781.1 PFAM: protein of unknown function DUF541; KEGG: pol:Bpro_2712 protein of unknown function DUF541; hypothetical protein 2683166 4686147 Pnap_2545 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982769.1 2682441 R 365044 CDS YP_982770.1 121605441 4686203 2683542..2684279 1 NC_008781.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 2684279 ompR 4686203 ompR Polaromonas naphthalenivorans CJ2 osmolarity response regulator YP_982770.1 2683542 D 365044 CDS YP_982771.1 121605442 4686572 2684388..2685764 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_2714 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2685764 4686572 Pnap_2547 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_982771.1 2684388 D 365044 CDS YP_982772.1 121605443 4686223 complement(2685857..2686357) 1 NC_008781.1 KEGG: pol:Bpro_2715 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 2686357 4686223 Pnap_2548 Polaromonas naphthalenivorans CJ2 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_982772.1 2685857 R 365044 CDS YP_982773.1 121605444 4686630 complement(2686391..2687119) 1 NC_008781.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: pol:Bpro_2716 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2687119 4686630 Pnap_2549 Polaromonas naphthalenivorans CJ2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_982773.1 2686391 R 365044 CDS YP_982774.1 121605445 4687000 2687152..2690637 1 NC_008781.1 KEGG: pol:Bpro_2717 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 2690637 4687000 Pnap_2550 Polaromonas naphthalenivorans CJ2 transcription-repair coupling factor YP_982774.1 2687152 D 365044 CDS YP_982775.1 121605446 4687137 2690686..2690994 1 NC_008781.1 KEGG: pol:Bpro_2718 virulence-associated protein VapB-like; virulence-associated protein VapB-like protein 2690994 4687137 Pnap_2551 Polaromonas naphthalenivorans CJ2 virulence-associated protein VapB-like protein YP_982775.1 2690686 D 365044 CDS YP_982776.1 121605447 4686887 2690991..2691449 1 NC_008781.1 PFAM: PilT protein domain protein; KEGG: pol:Bpro_2719 PilT protein-like; PilT domain-containing protein 2691449 4686887 Pnap_2552 Polaromonas naphthalenivorans CJ2 PilT domain-containing protein YP_982776.1 2690991 D 365044 CDS YP_982777.1 121605448 4687394 2691446..2691709 1 NC_008781.1 hypothetical protein 2691709 4687394 Pnap_2553 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982777.1 2691446 D 365044 CDS YP_982778.1 121605449 4686958 2691768..2692478 1 NC_008781.1 KEGG: pol:Bpro_2720 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; phosphoserine phosphatase SerB 2692478 4686958 Pnap_2554 Polaromonas naphthalenivorans CJ2 phosphoserine phosphatase SerB YP_982778.1 2691768 D 365044 CDS YP_982779.1 121605450 4687172 complement(2692491..2693828) 1 NC_008781.1 KEGG: rfr:Rfer_3211 hypothetical protein; hypothetical protein 2693828 4687172 Pnap_2555 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982779.1 2692491 R 365044 CDS YP_982780.1 121605451 4687401 complement(2693915..2694235) 1 NC_008781.1 SMART: HNH nuclease; KEGG: pol:Bpro_2722 HNH nuclease; HNH nuclease 2694235 4687401 Pnap_2556 Polaromonas naphthalenivorans CJ2 HNH nuclease YP_982780.1 2693915 R 365044 CDS YP_982781.1 121605452 4687420 2694363..2694839 1 NC_008781.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: pol:Bpro_3046 bacterioferritin; bacterioferritin 2694839 4687420 Pnap_2557 Polaromonas naphthalenivorans CJ2 bacterioferritin YP_982781.1 2694363 D 365044 CDS YP_982782.1 121605453 4687234 2695115..2697397 1 NC_008781.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pol:Bpro_3047 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2697397 4687234 Pnap_2558 Polaromonas naphthalenivorans CJ2 TonB-dependent siderophore receptor YP_982782.1 2695115 D 365044 CDS YP_982783.1 121605454 4687466 2697480..2698163 1 NC_008781.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pol:Bpro_3048 2OG-Fe(II) oxygenase; putative hydroxylase 2698163 4687466 Pnap_2559 Polaromonas naphthalenivorans CJ2 putative hydroxylase YP_982783.1 2697480 D 365044 CDS YP_982784.1 121605455 4687698 2698160..2699350 1 NC_008781.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3049 FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 2699350 4687698 Pnap_2560 Polaromonas naphthalenivorans CJ2 FMN-dependent alpha-hydroxy acid dehydrogenase YP_982784.1 2698160 D 365044 CDS YP_982785.1 121605456 4687711 2699606..2700808 1 NC_008781.1 KEGG: pae:PA4370 putative iron-regulated protein; putative iron-regulated protein 2700808 4687711 Pnap_2561 Polaromonas naphthalenivorans CJ2 putative iron-regulated protein YP_982785.1 2699606 D 365044 CDS YP_982786.1 121605457 4687971 2700819..2702246 1 NC_008781.1 PFAM: protein of unknown function DUF1111; KEGG: pfo:Pfl_4489 protein of unknown function DUF1111; hypothetical protein 2702246 4687971 Pnap_2562 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982786.1 2700819 D 365044 CDS YP_982787.1 121605458 4687996 2702243..2703352 1 NC_008781.1 KEGG: rsp:RSP_1544 hypothetical signal peptide protein; periplasmic lipoprotein-like protein 2703352 4687996 Pnap_2563 Polaromonas naphthalenivorans CJ2 periplasmic lipoprotein-like protein YP_982787.1 2702243 D 365044 CDS YP_982788.1 121605459 4687987 2703358..2704515 1 NC_008781.1 PFAM: Uncharacterised conserved protein UCP028101; KEGG: dar:Daro_1057 twin-arginine translocation pathway signal; hypothetical protein 2704515 4687987 Pnap_2564 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982788.1 2703358 D 365044 CDS YP_982789.1 121605460 4688010 complement(2704756..2704998) 1 NC_008781.1 hypothetical protein 2704998 4688010 Pnap_2565 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982789.1 2704756 R 365044 CDS YP_982790.1 121605461 4687734 2705159..2705428 1 NC_008781.1 hypothetical protein 2705428 4687734 Pnap_2566 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982790.1 2705159 D 365044 CDS YP_982791.1 121605462 4688074 2705572..2705805 1 NC_008781.1 KEGG: pol:Bpro_3050 hypothetical protein; hypothetical protein 2705805 4688074 Pnap_2567 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982791.1 2705572 D 365044 CDS YP_982792.1 121605463 4687809 2705873..2706643 1 NC_008781.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pol:Bpro_3051 TonB-like; TonB family protein 2706643 4687809 Pnap_2568 Polaromonas naphthalenivorans CJ2 TonB family protein YP_982792.1 2705873 D 365044 CDS YP_982793.1 121605464 4688114 2706666..2707394 1 NC_008781.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_3052 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2707394 4688114 Pnap_2569 Polaromonas naphthalenivorans CJ2 MotA/TolQ/ExbB proton channel YP_982793.1 2706666 D 365044 CDS YP_982794.1 121605465 4688146 2707397..2707807 1 NC_008781.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_3053 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2707807 4688146 Pnap_2570 Polaromonas naphthalenivorans CJ2 biopolymer transport protein ExbD/TolR YP_982794.1 2707397 D 365044 CDS YP_982795.1 121605466 4688151 2707819..2708022 1 NC_008781.1 KEGG: pol:Bpro_3054 hypothetical protein; hypothetical protein 2708022 4688151 Pnap_2571 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982795.1 2707819 D 365044 CDS YP_982796.1 121605467 4687876 complement(2708202..2708609) 1 NC_008781.1 PFAM: protein of unknown function DUF336; KEGG: pol:Bpro_3055 protein of unknown function DUF336; hypothetical protein 2708609 4687876 Pnap_2572 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982796.1 2708202 R 365044 CDS YP_982797.1 121605468 4688717 2708817..2709509 1 NC_008781.1 PFAM: protein of unknown function UPF0005; KEGG: pol:Bpro_3056 protein of unknown function UPF0005; hypothetical protein 2709509 4688717 Pnap_2573 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982797.1 2708817 D 365044 CDS YP_982798.1 121605469 4687903 2709588..2710121 1 NC_008781.1 KEGG: pol:Bpro_5570 transposase and inactivated derivative; transposase and inactivated derivative 2710121 4687903 Pnap_2574 Polaromonas naphthalenivorans CJ2 transposase and inactivated derivative YP_982798.1 2709588 D 365044 CDS YP_982799.1 121605470 4688538 2710126..2710659 1 NC_008781.1 KEGG: pol:Bpro_5569 ISSod10, transposase OrfB; ISSod10, transposase OrfB 2710659 4688538 Pnap_2575 Polaromonas naphthalenivorans CJ2 ISSod10, transposase OrfB YP_982799.1 2710126 D 365044 CDS YP_982800.1 121605471 4688529 complement(2710747..2712219) 1 NC_008781.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 2712219 rumA 4688529 rumA Polaromonas naphthalenivorans CJ2 23S rRNA 5-methyluridine methyltransferase YP_982800.1 2710747 R 365044 CDS YP_982801.1 121605472 4688476 complement(2712352..2713257) 1 NC_008781.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: pol:Bpro_3059 peptidase M23B; peptidase M23B 2713257 4688476 Pnap_2577 Polaromonas naphthalenivorans CJ2 peptidase M23B YP_982801.1 2712352 R 365044 CDS YP_982802.1 121605473 4688449 complement(2713322..2714185) 1 NC_008781.1 KEGG: pol:Bpro_3060 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 2714185 4688449 Pnap_2578 Polaromonas naphthalenivorans CJ2 protein-L-isoaspartate O-methyltransferase YP_982802.1 2713322 R 365044 CDS YP_982803.1 121605474 4688765 complement(2714200..2714985) 1 NC_008781.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 2714985 surE 4688765 surE Polaromonas naphthalenivorans CJ2 stationary phase survival protein SurE YP_982803.1 2714200 R 365044 CDS YP_982804.1 121605475 4688790 2715138..2716112 1 NC_008781.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_2783 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 2716112 4688790 Pnap_2580 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_982804.1 2715138 D 365044 CDS YP_982805.1 121605476 4688372 complement(2716135..2716974) 1 NC_008781.1 KEGG: pol:Bpro_2243 hypothetical protein; hypothetical protein 2716974 4688372 Pnap_2581 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982805.1 2716135 R 365044 CDS YP_982806.1 121605477 4688619 complement(2717087..2717443) 1 NC_008781.1 KEGG: pol:Bpro_2242 hypothetical protein; hypothetical protein 2717443 4688619 Pnap_2582 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982806.1 2717087 R 365044 CDS YP_982807.1 121605478 4688810 complement(2717544..2718482) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pfo:Pfl_1954 transcriptional regulator, LysR family; LysR family transcriptional regulator 2718482 4688810 Pnap_2583 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_982807.1 2717544 R 365044 CDS YP_982808.1 121605479 4688627 2718543..2719535 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: zmo:ZMO0867 nucleoside-diphosphate-sugar epimerase; NAD-dependent epimerase/dehydratase 2719535 4688627 Pnap_2584 Polaromonas naphthalenivorans CJ2 NAD-dependent epimerase/dehydratase YP_982808.1 2718543 D 365044 CDS YP_982809.1 121605480 4688851 complement(2719578..2720318) 1 NC_008781.1 PFAM: NADPH-dependent FMN reductase; KEGG: pol:Bpro_2220 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2720318 4688851 Pnap_2585 Polaromonas naphthalenivorans CJ2 NADPH-dependent FMN reductase YP_982809.1 2719578 R 365044 CDS YP_982810.1 121605481 4688646 complement(2720305..2720736) 1 NC_008781.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pol:Bpro_2219 arsenate reductase; arsenate reductase 2720736 4688646 Pnap_2586 Polaromonas naphthalenivorans CJ2 arsenate reductase YP_982810.1 2720305 R 365044 CDS YP_982811.1 121605482 4688661 2720818..2721171 1 NC_008781.1 SMART: regulatory protein, ArsR; KEGG: pol:Bpro_2218 transcriptional regulator, ArsR family; regulatory protein ArsR 2721171 4688661 Pnap_2587 Polaromonas naphthalenivorans CJ2 regulatory protein ArsR YP_982811.1 2720818 D 365044 CDS YP_982812.1 121605483 4688878 2721267..2721770 1 NC_008781.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pol:Bpro_2216 protein tyrosine phosphatase; protein tyrosine phosphatase 2721770 4688878 Pnap_2588 Polaromonas naphthalenivorans CJ2 protein tyrosine phosphatase YP_982812.1 2721267 D 365044 CDS YP_982813.1 121605484 4688651 2721797..2722849 1 NC_008781.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sde:Sde_3779 arsenical pump membrane protein, putative; arsenical-resistance protein 2722849 4688651 Pnap_2589 Polaromonas naphthalenivorans CJ2 arsenical-resistance protein YP_982813.1 2721797 D 365044 CDS YP_982814.1 121605485 4688932 complement(2722921..2723442) 1 NC_008781.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2214 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2723442 4688932 Pnap_2590 Polaromonas naphthalenivorans CJ2 N-acetyltransferase GCN5 YP_982814.1 2722921 R 365044 CDS YP_982815.1 121605486 4688688 2723682..2725073 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2826 secretion protein HlyD; RND family efflux transporter MFP subunit 2725073 4688688 Pnap_2591 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_982815.1 2723682 D 365044 CDS YP_982816.1 121605487 4688945 2725070..2728396 1 NC_008781.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2827 acriflavin resistance protein; acriflavin resistance protein 2728396 4688945 Pnap_2592 Polaromonas naphthalenivorans CJ2 acriflavin resistance protein YP_982816.1 2725070 D 365044 CDS YP_982817.1 121605488 4689349 2729231..2732449 1 NC_008781.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2828 acriflavin resistance protein; acriflavin resistance protein 2732449 4689349 Pnap_2593 Polaromonas naphthalenivorans CJ2 acriflavin resistance protein YP_982817.1 2729231 D 365044 CDS YP_982818.1 121605489 4689161 2732458..2733891 1 NC_008781.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2829 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 2733891 4689161 Pnap_2594 Polaromonas naphthalenivorans CJ2 RND efflux system outer membrane lipoprotein YP_982818.1 2732458 D 365044 CDS YP_982819.1 121605490 4689095 2734486..2734878 1 NC_008781.1 hypothetical protein 2734878 4689095 Pnap_2595 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982819.1 2734486 D 365044 CDS YP_982820.1 121605491 4689366 2734884..2735189 1 NC_008781.1 KEGG: sde:Sde_0641 hypothetical protein; hypothetical protein 2735189 4689366 Pnap_2596 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982820.1 2734884 D 365044 CDS YP_982821.1 121605492 4689405 complement(2735254..2735811) 1 NC_008781.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ade:Adeh_3972 rare lipoprotein A; rare lipoprotein A 2735811 4689405 Pnap_2597 Polaromonas naphthalenivorans CJ2 rare lipoprotein A YP_982821.1 2735254 R 365044 CDS YP_982822.1 121605493 4689424 2735835..2736122 1 NC_008781.1 hypothetical protein 2736122 4689424 Pnap_2598 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982822.1 2735835 D 365044 CDS YP_982823.1 121605494 4690195 2736710..2737114 1 NC_008781.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vch:VCA0890 glyoxylase I family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2737114 4690195 Pnap_2600 Polaromonas naphthalenivorans CJ2 glyoxalase/bleomycin resistance protein/dioxygenase YP_982823.1 2736710 D 365044 CDS YP_982824.1 121605495 4689192 complement(2737166..2738164) 1 NC_008781.1 PFAM: PfkB domain protein; KEGG: pol:Bpro_3202 PfkB; ribokinase-like domain-containing protein 2738164 4689192 Pnap_2601 Polaromonas naphthalenivorans CJ2 ribokinase-like domain-containing protein YP_982824.1 2737166 R 365044 CDS YP_982825.1 121605496 4689450 2738295..2739293 1 NC_008781.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_1903 periplasmic binding protein/LacI transcriptional regulator; periplasmic-binding protein/LacI transcriptional regulator 2739293 4689450 Pnap_2602 Polaromonas naphthalenivorans CJ2 periplasmic-binding protein/LacI transcriptional regulator YP_982825.1 2738295 D 365044 CDS YP_982826.1 121605497 4689249 2739467..2740474 1 NC_008781.1 PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type; porin 2740474 4689249 Pnap_2603 Polaromonas naphthalenivorans CJ2 porin YP_982826.1 2739467 D 365044 CDS YP_982827.1 121605498 4689268 2740617..2741570 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_1902 inner-membrane translocator; inner-membrane translocator 2741570 4689268 Pnap_2604 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_982827.1 2740617 D 365044 CDS YP_982828.1 121605499 4689559 2741570..2742361 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1901 ABC transporter related; ABC transporter-like protein 2742361 4689559 Pnap_2605 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982828.1 2741570 D 365044 CDS YP_982829.1 121605500 4689254 2742388..2742840 1 NC_008781.1 PFAM: RbsD or FucU transport; KEGG: pol:Bpro_3206 RbsD or FucU transport; transporter 2742840 4689254 Pnap_2606 Polaromonas naphthalenivorans CJ2 transporter YP_982829.1 2742388 D 365044 CDS YP_982830.1 121605501 4689598 2742837..2744051 1 NC_008781.1 PFAM: ROK family protein; KEGG: pol:Bpro_3207 hypothetical protein; ROK family protein 2744051 4689598 Pnap_2607 Polaromonas naphthalenivorans CJ2 ROK family protein YP_982830.1 2742837 D 365044 CDS YP_982831.1 121605502 4689602 2744275..2745276 1 NC_008781.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_3203 periplasmic binding protein/LacI transcriptional regulator; periplasmic-binding protein/LacI transcriptional regulator 2745276 4689602 Pnap_2608 Polaromonas naphthalenivorans CJ2 periplasmic-binding protein/LacI transcriptional regulator YP_982831.1 2744275 D 365044 CDS YP_982832.1 121605503 4690087 complement(2745429..2746760) 1 NC_008781.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 2746760 glmM 4690087 glmM Polaromonas naphthalenivorans CJ2 phosphoglucosamine mutase YP_982832.1 2745429 R 365044 CDS YP_982833.1 121605504 4687421 complement(2746904..2747755) 1 NC_008781.1 KEGG: pol:Bpro_2851 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 2747755 4687421 Pnap_2610 Polaromonas naphthalenivorans CJ2 dihydropteroate synthase YP_982833.1 2746904 R 365044 CDS YP_982834.1 121605505 4690067 complement(2747862..2749790) 1 NC_008781.1 KEGG: pol:Bpro_2852 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 2749790 4690067 Pnap_2611 Polaromonas naphthalenivorans CJ2 ATP-dependent metalloprotease FtsH YP_982834.1 2747862 R 365044 CDS YP_982835.1 121605506 4690099 complement(2749940..2750677) 1 NC_008781.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_2853 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 2750677 4690099 Pnap_2612 Polaromonas naphthalenivorans CJ2 ribosomal RNA methyltransferase RrmJ/FtsJ YP_982835.1 2749940 R 365044 CDS YP_982836.1 121605507 4690100 2750719..2751195 1 NC_008781.1 PFAM: protein of unknown function UPF0044; KEGG: pol:Bpro_2854 protein of unknown function UPF0044; hypothetical protein 2751195 4690100 Pnap_2613 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982836.1 2750719 D 365044 CDS YP_982837.1 121605508 4690116 2751305..2753362 1 NC_008781.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: pol:Bpro_2855 oligopeptidase A; oligopeptidase A 2753362 4690116 Pnap_2614 Polaromonas naphthalenivorans CJ2 oligopeptidase A YP_982837.1 2751305 D 365044 CDS YP_982838.1 121605509 4690110 2753386..2754075 1 NC_008781.1 PFAM: glutaredoxin; KEGG: pol:Bpro_2856 glutaredoxin; glutaredoxin 2754075 4690110 Pnap_2615 Polaromonas naphthalenivorans CJ2 glutaredoxin YP_982838.1 2753386 D 365044 CDS YP_982839.1 121605510 4690109 complement(2754113..2754862) 1 NC_008781.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2754862 4690109 Pnap_2616 Polaromonas naphthalenivorans CJ2 ribose-5-phosphate isomerase A YP_982839.1 2754113 R 365044 CDS YP_982840.1 121605511 4690113 2754928..2755980 1 NC_008781.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2755980 4690113 Pnap_2617 Polaromonas naphthalenivorans CJ2 dihydroorotate dehydrogenase 2 YP_982840.1 2754928 D 365044 CDS YP_982841.1 121605512 4690122 2756243..2757214 1 NC_008781.1 hypothetical protein 2757214 4690122 Pnap_2618 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982841.1 2756243 D 365044 CDS YP_982842.1 121605513 4690144 2757211..2757990 1 NC_008781.1 hypothetical protein 2757990 4690144 Pnap_2619 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982842.1 2757211 D 365044 CDS YP_982843.1 121605514 4690121 complement(2758057..2758314) 1 NC_008781.1 hypothetical protein 2758314 4690121 Pnap_2620 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982843.1 2758057 R 365044 CDS YP_982844.1 121605515 4690135 2758394..2758990 1 NC_008781.1 PFAM: 3'-5' exonuclease; KEGG: pol:Bpro_2737 3'-5' exonuclease; 3'-5' exonuclease 2758990 4690135 Pnap_2621 Polaromonas naphthalenivorans CJ2 3'-5' exonuclease YP_982844.1 2758394 D 365044 CDS YP_982845.1 121605516 4690125 complement(2759051..2759689) 1 NC_008781.1 KEGG: pol:Bpro_2033 hypothetical protein; hypothetical protein 2759689 4690125 Pnap_2622 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982845.1 2759051 R 365044 CDS YP_982846.1 121605517 4690174 2759782..2761035 1 NC_008781.1 KEGG: pol:Bpro_2909 putative uncharacterized conserved protein; hypothetical protein 2761035 4690174 Pnap_2623 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982846.1 2759782 D 365044 CDS YP_982847.1 121605518 4689866 complement(2761157..2762200) 1 NC_008781.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_0584 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 2762200 4689866 Pnap_2624 Polaromonas naphthalenivorans CJ2 helix-turn-helix domain-containing protein YP_982847.1 2761157 R 365044 CDS YP_982848.1 121605519 4690197 2762407..2763798 1 NC_008781.1 TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: rfr:Rfer_0585 amino acid permease-associated protein; ethanolamine transporter 2763798 4690197 Pnap_2625 Polaromonas naphthalenivorans CJ2 ethanolamine transporter YP_982848.1 2762407 D 365044 CDS YP_982849.1 121605520 4689853 2763806..2765203 1 NC_008781.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: rfr:Rfer_0586 ethanolamine ammonia lyase large subunit; ethanolamine ammonia lyase large subunit 2765203 4689853 Pnap_2626 Polaromonas naphthalenivorans CJ2 ethanolamine ammonia lyase large subunit YP_982849.1 2763806 D 365044 CDS YP_982850.1 121605521 4690035 2765226..2766086 1 NC_008781.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 2766086 4690035 Pnap_2627 Polaromonas naphthalenivorans CJ2 ethanolamine ammonia-lyase small subunit YP_982850.1 2765226 D 365044 CDS YP_982851.1 121605522 4689953 complement(2766092..2768716) 1 NC_008781.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2768716 alaS 4689953 alaS Polaromonas naphthalenivorans CJ2 alanyl-tRNA synthetase YP_982851.1 2766092 R 365044 CDS YP_982852.1 121605523 4689830 complement(2768789..2770180) 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rfr:Rfer_0591 transcriptional regulator, GntR family; GntR family transcriptional regulator 2770180 4689830 Pnap_2629 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_982852.1 2768789 R 365044 CDS YP_982853.1 121605524 4689982 2770364..2771656 1 NC_008781.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: rfr:Rfer_0592 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase 2771656 4689982 Pnap_2630 Polaromonas naphthalenivorans CJ2 4-aminobutyrate aminotransferase YP_982853.1 2770364 D 365044 CDS YP_982854.1 121605525 4689838 2771720..2772796 1 NC_008781.1 KEGG: rfr:Rfer_0593 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 2772796 4689838 Pnap_2631 Polaromonas naphthalenivorans CJ2 spermidine/putrescine ABC transporter ATPase YP_982854.1 2771720 D 365044 CDS YP_982855.1 121605526 4689935 2772865..2773896 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_0594 extracellular solute-binding protein, family 1; extracellular solute-binding protein 2773896 4689935 Pnap_2632 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_982855.1 2772865 D 365044 CDS YP_982856.1 121605527 4689944 2773927..2775198 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0595 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2775198 4689944 Pnap_2633 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_982856.1 2773927 D 365044 CDS YP_982857.1 121605528 4689802 2775206..2776033 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0596 binding-protein-dependent transport systems inner membrane component; Fis family transcriptional regulator 2776033 4689802 Pnap_2634 Polaromonas naphthalenivorans CJ2 Fis family transcriptional regulator YP_982857.1 2775206 D 365044 CDS YP_982858.1 121605529 4689749 2776062..2777009 1 NC_008781.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rfr:Rfer_0597 agmatinase, putative; putative agmatinase 2777009 4689749 Pnap_2635 Polaromonas naphthalenivorans CJ2 putative agmatinase YP_982858.1 2776062 D 365044 CDS YP_982859.1 121605530 4689754 2777124..2778590 1 NC_008781.1 KEGG: pol:Bpro_2917 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase 2778590 4689754 Pnap_2636 Polaromonas naphthalenivorans CJ2 succinate-semialdehyde dehydrogenase YP_982859.1 2777124 D 365044 CDS YP_982860.1 121605531 4689743 complement(2778556..2780832) 1 NC_008781.1 PFAM: FMN-binding domain protein; KEGG: sil:SPO1521 regulatory protein, putative; FMN-binding domain-containing protein 2780832 4689743 Pnap_2637 Polaromonas naphthalenivorans CJ2 FMN-binding domain-containing protein YP_982860.1 2778556 R 365044 CDS YP_982861.1 121605532 4689727 complement(2780837..2781871) 1 NC_008781.1 PFAM: ApbE family lipoprotein; KEGG: det:DET1595 ApbE/NosX family protein; ApbE family lipoprotein 2781871 4689727 Pnap_2638 Polaromonas naphthalenivorans CJ2 ApbE family lipoprotein YP_982861.1 2780837 R 365044 CDS YP_982862.1 121605533 4689740 2782142..2782630 1 NC_008781.1 hypothetical protein 2782630 4689740 Pnap_2639 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982862.1 2782142 D 365044 CDS YP_982863.1 121605534 4689714 complement(2782616..2783233) 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bja:blr5281 two-component response regulator; two component LuxR family transcriptional regulator 2783233 4689714 Pnap_2640 Polaromonas naphthalenivorans CJ2 two component LuxR family transcriptional regulator YP_982863.1 2782616 R 365044 CDS YP_982864.1 121605535 4689304 complement(2783244..2784650) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: bja:blr5280 similar to two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2784650 4689304 Pnap_2641 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_982864.1 2783244 R 365044 CDS YP_982865.1 121605536 4689684 complement(2784733..2785296) 1 NC_008781.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: gox:GOX0713 hypothetical protein; Sel1 domain-containing protein 2785296 4689684 Pnap_2642 Polaromonas naphthalenivorans CJ2 Sel1 domain-containing protein YP_982865.1 2784733 R 365044 CDS YP_982866.1 121605537 4689731 2785967..2787208 1 NC_008781.1 PFAM: phage integrase family protein; KEGG: tbd:Tbd_0943 putative integrase prophage protein; phage integrase family protein 2787208 4689731 Pnap_2643 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_982866.1 2785967 D 365044 CDS YP_982867.1 121605538 4689675 2787221..2787424 1 NC_008781.1 PFAM: YcfA family protein; KEGG: gox:GOX2706 hypothetical protein; hypothetical protein 2787424 4689675 Pnap_2644 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982867.1 2787221 D 365044 CDS YP_982868.1 121605539 4689275 2787439..2787852 1 NC_008781.1 PFAM: protein of unknown function UPF0150; KEGG: bpa:BPP3142 hypothetical protein; hypothetical protein 2787852 4689275 Pnap_2645 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982868.1 2787439 D 365044 CDS YP_982869.1 121605540 4689540 2787960..2788490 1 NC_008781.1 hypothetical protein 2788490 4689540 Pnap_2646 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982869.1 2787960 D 365044 CDS YP_982870.1 121605541 4689225 2788573..2788872 1 NC_008781.1 PFAM: Prophage CP4-57 regulatory; KEGG: cvi:CV3853 hypothetical protein; phage transcriptional regulator AlpA 2788872 4689225 Pnap_2647 Polaromonas naphthalenivorans CJ2 phage transcriptional regulator AlpA YP_982870.1 2788573 D 365044 CDS YP_982871.1 121605542 4689213 2788963..2789250 1 NC_008781.1 KEGG: rso:RSc1868 hypothetical protein; hypothetical protein 2789250 4689213 Pnap_2648 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982871.1 2788963 D 365044 CDS YP_982872.1 121605543 4689219 2789247..2789873 1 NC_008781.1 hypothetical protein 2789873 4689219 Pnap_2649 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982872.1 2789247 D 365044 CDS YP_982873.1 121605544 4689460 2789870..2790214 1 NC_008781.1 hypothetical protein 2790214 4689460 Pnap_2650 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982873.1 2789870 D 365044 CDS YP_982874.1 121605545 4689158 2790211..2790573 1 NC_008781.1 hypothetical protein 2790573 4689158 Pnap_2651 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982874.1 2790211 D 365044 CDS YP_982875.1 121605546 4689413 2790566..2793007 1 NC_008781.1 KEGG: rfr:Rfer_1359 conserved hypothetical membrane spanning protein; hypothetical protein 2793007 4689413 Pnap_2652 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982875.1 2790566 D 365044 CDS YP_982876.1 121605547 4689026 2793004..2793540 1 NC_008781.1 KEGG: rfr:Rfer_1358 hypothetical protein; hypothetical protein 2793540 4689026 Pnap_2653 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982876.1 2793004 D 365044 CDS YP_982877.1 121605548 4689409 2793709..2794143 1 NC_008781.1 hypothetical protein 2794143 4689409 Pnap_2654 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982877.1 2793709 D 365044 CDS YP_982878.1 121605549 4689037 2794661..2795299 1 NC_008781.1 KEGG: tbd:Tbd_2679 hypothetical protein; hypothetical protein 2795299 4689037 Pnap_2655 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982878.1 2794661 D 365044 CDS YP_982879.1 121605550 4689044 complement(2795491..2798238) 1 NC_008781.1 KEGG: mfa:Mfla_2628 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 2798238 4689044 Pnap_2656 Polaromonas naphthalenivorans CJ2 multi-sensor signal transduction histidine kinase YP_982879.1 2795491 R 365044 CDS YP_982880.1 121605551 4689059 complement(2798320..2798958) 1 NC_008781.1 KEGG: pol:Bpro_1906 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2798958 4689059 Pnap_2657 Polaromonas naphthalenivorans CJ2 3-oxoacid CoA-transferase subunit B YP_982880.1 2798320 R 365044 CDS YP_982881.1 121605552 4689085 complement(2798961..2799779) 1 NC_008781.1 KEGG: pol:Bpro_1905 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2799779 4689085 Pnap_2658 Polaromonas naphthalenivorans CJ2 3-oxoacid CoA-transferase subunit A YP_982881.1 2798961 R 365044 CDS YP_982882.1 121605553 4689079 2799890..2800444 1 NC_008781.1 KEGG: pol:Bpro_1904 transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein, LuxR; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 2800444 4689079 Pnap_2659 Polaromonas naphthalenivorans CJ2 putative PAS/PAC sensor protein YP_982882.1 2799890 D 365044 CDS YP_982883.1 121605554 4689094 complement(2800514..2800873) 1 NC_008781.1 KEGG: pol:Bpro_1902 ribosomal subunit interface protein, putative; ribosomal subunit Interface protein 2800873 4689094 Pnap_2660 Polaromonas naphthalenivorans CJ2 ribosomal subunit Interface protein YP_982883.1 2800514 R 365044 CDS YP_982884.1 121605555 4689387 complement(2801163..2801540) 1 NC_008781.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_1901 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 2801540 4689387 Pnap_2661 Polaromonas naphthalenivorans CJ2 carboxymuconolactone decarboxylase YP_982884.1 2801163 R 365044 CDS YP_982885.1 121605556 4689078 2801729..2803189 1 NC_008781.1 PFAM: Catalase domain protein; KEGG: neu:NE1886 catalase; catalase 2803189 4689078 Pnap_2662 Polaromonas naphthalenivorans CJ2 catalase YP_982885.1 2801729 D 365044 CDS YP_982886.1 121605557 4689110 complement(2803229..2804236) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5382 uncharacterized protein UPF0065; hypothetical protein 2804236 4689110 Pnap_2663 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982886.1 2803229 R 365044 CDS YP_982887.1 121605558 4689112 complement(2804552..2805994) 1 NC_008781.1 PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2844 aldehyde dehydrogenase; aldehyde dehydrogenase 2805994 4689112 Pnap_2664 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_982887.1 2804552 R 365044 CDS YP_982888.1 121605559 4689089 complement(2806029..2807027) 1 NC_008781.1 PFAM: protein of unknown function DUF1238; KEGG: mlo:mll5655 hypothetical protein; hypothetical protein 2807027 4689089 Pnap_2665 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982888.1 2806029 R 365044 CDS YP_982889.1 121605560 4689109 complement(2807062..2808801) 1 NC_008781.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2808801 4689109 Pnap_2666 Polaromonas naphthalenivorans CJ2 dihydroxy-acid dehydratase YP_982889.1 2807062 R 365044 CDS YP_982890.1 121605561 4689124 2808985..2809947 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0457 transcriptional regulator, LysR family; LysR family transcriptional regulator 2809947 4689124 Pnap_2667 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_982890.1 2808985 D 365044 CDS YP_982891.1 121605562 4689373 2810081..2810689 1 NC_008781.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; KEGG: pol:Bpro_1899 uncharacterised peroxidase-related; peroxidase-like protein 2810689 4689373 Pnap_2668 Polaromonas naphthalenivorans CJ2 peroxidase-like protein YP_982891.1 2810081 D 365044 CDS YP_982892.1 121605563 4689135 2810727..2811023 1 NC_008781.1 hypothetical protein 2811023 4689135 Pnap_2669 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982892.1 2810727 D 365044 CDS YP_982893.1 121605564 4689126 2811241..2813064 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mfa:Mfla_2537 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2813064 4689126 Pnap_2670 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_982893.1 2811241 D 365044 CDS YP_982894.1 121605565 4689111 2813061..2813783 1 NC_008781.1 PFAM: response regulator receiver; KEGG: plt:Plut_1025 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2813783 4689111 Pnap_2671 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_982894.1 2813061 D 365044 CDS YP_982895.1 121605566 4689954 complement(2813820..2815052) 1 NC_008781.1 PFAM: beta-ketoacyl synthase; KEGG: dar:Daro_4170 beta-ketoacyl synthase; beta-ketoacyl synthase 2815052 4689954 Pnap_2672 Polaromonas naphthalenivorans CJ2 beta-ketoacyl synthase YP_982895.1 2813820 R 365044 CDS YP_982896.1 121605567 4689842 complement(2815049..2815357) 1 NC_008781.1 PFAM: phosphopantetheine-binding; KEGG: sil:SPO1931 acyl carrier protein, putative; phosphopantetheine-binding protein 2815357 4689842 Pnap_2673 Polaromonas naphthalenivorans CJ2 phosphopantetheine-binding protein YP_982896.1 2815049 R 365044 CDS YP_982897.1 121605568 4689875 complement(2815354..2816685) 1 NC_008781.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pmt:PMT0413 NAD binding site; FAD dependent oxidoreductase 2816685 4689875 Pnap_2674 Polaromonas naphthalenivorans CJ2 FAD dependent oxidoreductase YP_982897.1 2815354 R 365044 CDS YP_982898.1 121605569 4689948 complement(2816682..2817443) 1 NC_008781.1 KEGG: cch:Cag_0252 hypothetical protein; hypothetical protein 2817443 4689948 Pnap_2675 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982898.1 2816682 R 365044 CDS YP_982899.1 121605570 4689792 complement(2817440..2818504) 1 NC_008781.1 PFAM: chalcone and stilbene synthases domain protein; Chalcone and stilbene synthases domain protein; FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: sru:SRU_1395 chalcone synthase, putative; chalcone/stilbene synthase domain-containing protein 2818504 4689792 Pnap_2676 Polaromonas naphthalenivorans CJ2 chalcone/stilbene synthase domain-containing protein YP_982899.1 2817440 R 365044 CDS YP_982900.1 121605571 4689899 complement(2818707..2819129) 1 NC_008781.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_1898 thioesterase superfamily; thioesterase superfamily protein 2819129 4689899 Pnap_2677 Polaromonas naphthalenivorans CJ2 thioesterase superfamily protein YP_982900.1 2818707 R 365044 CDS YP_982901.1 121605572 4689805 complement(2819161..2820126) 1 NC_008781.1 KEGG: pol:Bpro_1897 protein of unknown function DUF6, transmembrane; hypothetical protein 2820126 4689805 Pnap_2678 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982901.1 2819161 R 365044 CDS YP_982902.1 121605573 4689956 2820297..2821982 1 NC_008781.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pol:Bpro_1895 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 2821982 4689956 Pnap_2679 Polaromonas naphthalenivorans CJ2 electron-transferring-flavoprotein dehydrogenase YP_982902.1 2820297 D 365044 CDS YP_982903.1 121605574 4689886 complement(2822147..2823571) 1 NC_008781.1 PFAM: sugar transferase; KEGG: pol:Bpro_1875 sugar transferase; sugar transferase 2823571 4689886 Pnap_2680 Polaromonas naphthalenivorans CJ2 sugar transferase YP_982903.1 2822147 R 365044 CDS YP_982904.1 121605575 4689188 complement(2823564..2824352) 1 NC_008781.1 PFAM: regulatory protein, LuxR; KEGG: pol:Bpro_1874 transcriptional regulator, LuxR family; response regulator receiver protein 2824352 4689188 Pnap_2681 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_982904.1 2823564 R 365044 CDS YP_982905.1 121605576 4689876 2824582..2825103 1 NC_008781.1 hypothetical protein 2825103 4689876 Pnap_2682 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982905.1 2824582 D 365044 CDS YP_982906.1 121605577 4689848 2825394..2826548 1 NC_008781.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: pol:Bpro_1868 glycine cleavage system T protein; glycine cleavage system T protein 2826548 4689848 Pnap_2683 Polaromonas naphthalenivorans CJ2 glycine cleavage system T protein YP_982906.1 2825394 D 365044 CDS YP_982907.1 121605578 4690021 2826596..2826967 1 NC_008781.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: pol:Bpro_1867 glycine cleavage system H protein; glycine cleavage system H protein 2826967 4690021 Pnap_2684 Polaromonas naphthalenivorans CJ2 glycine cleavage system H protein YP_982907.1 2826596 D 365044 CDS YP_982908.1 121605579 4689913 2826983..2829877 1 NC_008781.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 2829877 4689913 Pnap_2685 Polaromonas naphthalenivorans CJ2 glycine dehydrogenase YP_982908.1 2826983 D 365044 CDS YP_982909.1 121605580 4689847 2830005..2830406 1 NC_008781.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_1864 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2830406 4689847 Pnap_2686 Polaromonas naphthalenivorans CJ2 FKBP-type peptidylprolyl isomerase YP_982909.1 2830005 D 365044 CDS YP_982910.1 121605581 4689873 complement(2830433..2831308) 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1863 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2831308 4689873 Pnap_2687 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold protein YP_982910.1 2830433 R 365044 CDS YP_982911.1 121605582 4689980 complement(2831381..2833150) 1 NC_008781.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_4855 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 2833150 4689980 Pnap_2688 Polaromonas naphthalenivorans CJ2 integral membrane sensor hybrid histidine kinase YP_982911.1 2831381 R 365044 CDS YP_982912.1 121605583 4689967 complement(2833150..2833824) 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: corR; DNA-binding response regulator CorR; two component LuxR family transcriptional regulator 2833824 4689967 Pnap_2689 Polaromonas naphthalenivorans CJ2 two component LuxR family transcriptional regulator YP_982912.1 2833150 R 365044 CDS YP_982913.1 121605584 4689932 complement(2833808..2835136) 1 NC_008781.1 KEGG: mbo:Mb1015 possible conserved exported protein; secreted hydrolase-like protein 2835136 4689932 Pnap_2690 Polaromonas naphthalenivorans CJ2 secreted hydrolase-like protein YP_982913.1 2833808 R 365044 CDS YP_982914.1 121605585 4689925 complement(2835215..2835682) 1 NC_008781.1 KEGG: cps:CPS_4930 cytochrome c family protein; cytochrome c family protein 2835682 4689925 Pnap_2691 Polaromonas naphthalenivorans CJ2 cytochrome c family protein YP_982914.1 2835215 R 365044 CDS YP_982915.1 121605586 4689921 complement(2835692..2836918) 1 NC_008781.1 PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: reu:Reut_A3083 twin-arginine translocation pathway signal; molybdopterin-binding oxidoreductase 2836918 4689921 Pnap_2692 Polaromonas naphthalenivorans CJ2 molybdopterin-binding oxidoreductase YP_982915.1 2835692 R 365044 CDS YP_982916.1 121605587 4689924 2837186..2838295 1 NC_008781.1 KEGG: syn:slr0708 periplasmic protein, function unknown; hypothetical protein 2838295 4689924 Pnap_2693 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982916.1 2837186 D 365044 CDS YP_982917.1 121605588 4689892 2838345..2839193 1 NC_008781.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: bja:blr6160 hypothetical protein; molybdopterin dehydrogenase 2839193 4689892 Pnap_2694 Polaromonas naphthalenivorans CJ2 molybdopterin dehydrogenase YP_982917.1 2838345 D 365044 CDS YP_982918.1 121605589 4689909 2839190..2841901 1 NC_008781.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bja:blr6161 putative dehydrogenase; molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase 2841901 4689909 Pnap_2695 Polaromonas naphthalenivorans CJ2 molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase YP_982918.1 2839190 D 365044 CDS YP_982919.1 121605590 4689784 2841905..2842894 1 NC_008781.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bja:blr3881 hypothetical protein; antibiotic biosynthesis monooxygenase 2842894 4689784 Pnap_2696 Polaromonas naphthalenivorans CJ2 antibiotic biosynthesis monooxygenase YP_982919.1 2841905 D 365044 CDS YP_982920.1 121605591 4689846 2842941..2843963 1 NC_008781.1 PFAM: protein of unknown function DUF182; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0866 protein of unknown function DUF182; hypothetical protein 2843963 4689846 Pnap_2697 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982920.1 2842941 D 365044 CDS YP_982921.1 121605592 4689874 2843963..2844487 1 NC_008781.1 KEGG: pol:Bpro_3555 hypothetical protein; hypothetical protein 2844487 4689874 Pnap_2698 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982921.1 2843963 D 365044 CDS YP_982922.1 121605593 4689788 complement(2844524..2845408) 1 NC_008781.1 PFAM: NUDIX hydrolase; KEGG: bja:bll5330 hypothetical protein; NUDIX hydrolase 2845408 4689788 Pnap_2699 Polaromonas naphthalenivorans CJ2 NUDIX hydrolase YP_982922.1 2844524 R 365044 CDS YP_982923.1 121605594 4689785 complement(2845485..2847065) 1 NC_008781.1 PFAM: coenzyme A transferase; KEGG: ecc:c5300 putative acetyl-CoA:acetoacetyl-CoA transferase; coenzyme A transferase 2847065 4689785 Pnap_2700 Polaromonas naphthalenivorans CJ2 coenzyme A transferase YP_982923.1 2845485 R 365044 CDS YP_982924.1 121605595 4689810 complement(2847380..2848540) 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bja:blr3304 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2848540 4689810 Pnap_2701 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_982924.1 2847380 R 365044 CDS YP_982925.1 121605596 4689839 complement(2848704..2849531) 1 NC_008781.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll3656 hypothetical protein; xylose isomerase domain-containing protein 2849531 4689839 Pnap_2702 Polaromonas naphthalenivorans CJ2 xylose isomerase domain-containing protein YP_982925.1 2848704 R 365044 CDS YP_982926.1 121605597 4689808 complement(2849546..2850172) 1 NC_008781.1 PFAM: NIPSNAP family containing protein; KEGG: bja:bll3657 hypothetical protein; NIPSNAP family protein 2850172 4689808 Pnap_2703 Polaromonas naphthalenivorans CJ2 NIPSNAP family protein YP_982926.1 2849546 R 365044 CDS YP_982927.1 121605598 4689811 complement(2850228..2851976) 1 NC_008781.1 proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase 2851976 4689811 Pnap_2704 Polaromonas naphthalenivorans CJ2 putative FAD-binding dehydrogenase YP_982927.1 2850228 R 365044 CDS YP_982928.1 121605599 4689807 complement(2852089..2852943) 1 NC_008781.1 PFAM: regulatory proteins, IclR; KEGG: bja:blr3665 transcriptional regulatory protein; regulatory proteins, IclR 2852943 4689807 Pnap_2705 Polaromonas naphthalenivorans CJ2 regulatory proteins, IclR YP_982928.1 2852089 R 365044 CDS YP_982929.1 121605600 4689806 2853055..2853849 1 NC_008781.1 PFAM: Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: bja:blr3858 putative shikimate 5-dehydrogenase; shikimate dehydrogenase 2853849 4689806 Pnap_2706 Polaromonas naphthalenivorans CJ2 shikimate dehydrogenase YP_982929.1 2853055 D 365044 CDS YP_982930.1 121605601 4689796 2853851..2855593 1 NC_008781.1 proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase 2855593 4689796 Pnap_2707 Polaromonas naphthalenivorans CJ2 putative FAD-binding dehydrogenase YP_982930.1 2853851 D 365044 CDS YP_982931.1 121605602 4689789 complement(2855737..2856690) 1 NC_008781.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: rme:Rmet_4017 transcriptional regulator, AraC family; AraC family transcriptional regulator 2856690 4689789 Pnap_2708 Polaromonas naphthalenivorans CJ2 AraC family transcriptional regulator YP_982931.1 2855737 R 365044 CDS YP_982932.1 121605603 4689039 2856788..2857618 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:blr3672 oxidoreductase; short-chain dehydrogenase/reductase SDR 2857618 4689039 Pnap_2709 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_982932.1 2856788 D 365044 CDS YP_982933.1 121605604 4689028 2857641..2859347 1 NC_008781.1 proposed role in polysaccahride synthesis; putative succinate dehydrogenase 2859347 4689028 Pnap_2710 Polaromonas naphthalenivorans CJ2 putative succinate dehydrogenase YP_982933.1 2857641 D 365044 CDS YP_982934.1 121605605 4689057 2859344..2859694 1 NC_008781.1 PFAM: NIPSNAP family containing protein; KEGG: rme:Rmet_5493 NIPSNAP domain protein; NIPSNAP family protein 2859694 4689057 Pnap_2711 Polaromonas naphthalenivorans CJ2 NIPSNAP family protein YP_982934.1 2859344 D 365044 CDS YP_982935.1 121605606 4689074 2859808..2860668 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mlo:mlr5879 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2860668 4689074 Pnap_2712 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_982935.1 2859808 D 365044 CDS YP_982936.1 121605607 4688989 2860727..2861578 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: bpa:BPP2196 putative ABC transport system, membrane protein; inner-membrane translocator 2861578 4688989 Pnap_2713 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_982936.1 2860727 D 365044 CDS YP_982937.1 121605608 4688976 2861593..2862648 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: rpd:RPD_0052 inner-membrane translocator; inner-membrane translocator 2862648 4688976 Pnap_2714 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_982937.1 2861593 D 365044 CDS YP_982938.1 121605609 4689014 2862661..2863380 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr1066 ABC transporter ATP-binding protein; ABC transporter-like protein 2863380 4689014 Pnap_2715 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982938.1 2862661 D 365044 CDS YP_982939.1 121605610 4688980 2863377..2864081 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_3678 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 2864081 4688980 Pnap_2716 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982939.1 2863377 D 365044 CDS YP_982940.1 121605611 4688962 2864153..2865343 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_C6330 twin-arginine translocation pathway signal; extracellular ligand-binding receptor 2865343 4688962 Pnap_2717 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_982940.1 2864153 D 365044 CDS YP_982941.1 121605612 4688966 2865353..2865766 1 NC_008781.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: sit:TM1040_3469 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 2865766 4688966 Pnap_2718 Polaromonas naphthalenivorans CJ2 5-carboxymethyl-2-hydroxymuconate isomerase YP_982941.1 2865353 D 365044 CDS YP_982942.1 121605613 4688955 2865784..2866677 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: bja:blr3666 nucleoside-diphosphate-sugar epimerase; NAD-dependent epimerase/dehydratase 2866677 4688955 Pnap_2719 Polaromonas naphthalenivorans CJ2 NAD-dependent epimerase/dehydratase YP_982942.1 2865784 D 365044 CDS YP_982943.1 121605614 4688677 2866831..2867658 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:blr3672 oxidoreductase; short-chain dehydrogenase/reductase SDR 2867658 4688677 Pnap_2720 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_982943.1 2866831 D 365044 CDS YP_982944.1 121605615 4688909 complement(2867949..2868296) 1 NC_008781.1 SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: hch:HCH_00421 predicted protein tyrosine phosphatase; low molecular weight phosphotyrosine protein phosphatase 2868296 4688909 Pnap_2721 Polaromonas naphthalenivorans CJ2 low molecular weight phosphotyrosine protein phosphatase YP_982944.1 2867949 R 365044 CDS YP_982945.1 121605616 4688913 complement(2868502..2868906) 1 NC_008781.1 hypothetical protein 2868906 4688913 Pnap_2722 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982945.1 2868502 R 365044 CDS YP_982946.1 121605617 4688674 2869303..2870148 1 NC_008781.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_B1481 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2870148 4688674 Pnap_2723 Polaromonas naphthalenivorans CJ2 N-acetyltransferase GCN5 YP_982946.1 2869303 D 365044 CDS YP_982947.1 121605618 4688346 complement(2870260..2871228) 1 NC_008781.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0281 ferredoxin; ferredoxin 2871228 4688346 Pnap_2724 Polaromonas naphthalenivorans CJ2 ferredoxin YP_982947.1 2870260 R 365044 CDS YP_982948.1 121605619 4688645 complement(2871239..2872303) 1 NC_008781.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_0280 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein 2872303 4688645 Pnap_2725 Polaromonas naphthalenivorans CJ2 Rieske (2Fe-2S) domain-containing protein YP_982948.1 2871239 R 365044 CDS YP_982949.1 121605620 4688356 complement(2872348..2873055) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3380 ABC transporter related; ABC transporter-like protein 2873055 4688356 Pnap_2726 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982949.1 2872348 R 365044 CDS YP_982950.1 121605621 4688361 complement(2873048..2873839) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3381 ABC transporter related; ABC transporter-like protein 2873839 4688361 Pnap_2727 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_982950.1 2873048 R 365044 CDS YP_982951.1 121605622 4688392 complement(2873836..2874804) 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_3382 inner-membrane translocator; inner-membrane translocator 2874804 4688392 Pnap_2728 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_982951.1 2873836 R 365044 CDS YP_982952.1 121605623 4688374 complement(2874806..2875678) 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0289 inner-membrane translocator; inner-membrane translocator 2875678 4688374 Pnap_2729 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_982952.1 2874806 R 365044 CDS YP_982953.1 121605624 4688368 complement(2875700..2876872) 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0288 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2876872 4688368 Pnap_2730 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_982953.1 2875700 R 365044 CDS YP_982954.1 121605625 4688388 complement(2876938..2877723) 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_3386 transcriptional regulator, GntR family; GntR family transcriptional regulator 2877723 4688388 Pnap_2731 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_982954.1 2876938 R 365044 CDS YP_982955.1 121605626 4688397 2878069..2878350 1 NC_008781.1 KEGG: rfr:Rfer_1808 hypothetical protein; hypothetical protein 2878350 4688397 Pnap_2732 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982955.1 2878069 D 365044 CDS YP_982956.1 121605627 4689284 complement(2878437..2879285) 1 NC_008781.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit beta 2879285 4689284 Pnap_2733 Polaromonas naphthalenivorans CJ2 protocatechuate 4,5-dioxygenase subunit beta YP_982956.1 2878437 R 365044 CDS YP_982957.1 121605628 4688427 complement(2879315..2879680) 1 NC_008781.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase subunit alpha 2879680 4688427 Pnap_2734 Polaromonas naphthalenivorans CJ2 protocatechuate 4,5-dioxygenase subunit alpha YP_982957.1 2879315 R 365044 CDS YP_982958.1 121605629 4688434 2879773..2880690 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0296 transcriptional regulator, LysR family; LysR family transcriptional regulator 2880690 4688434 Pnap_2735 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_982958.1 2879773 D 365044 CDS YP_982959.1 121605630 4688426 2881012..2881785 1 NC_008781.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_4070 ferredoxin--NADP(+) reductase; ferredoxin--NADP(+) reductase 2881785 4688426 Pnap_2736 Polaromonas naphthalenivorans CJ2 ferredoxin--NADP(+) reductase YP_982959.1 2881012 D 365044 CDS YP_982960.1 121605631 4688442 complement(2881969..2882757) 1 NC_008781.1 KEGG: rso:RS03699 hypothetical protein; hypothetical protein 2882757 4688442 Pnap_2737 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982960.1 2881969 R 365044 CDS YP_982961.1 121605632 4688430 complement(2882777..2883850) 1 NC_008781.1 KEGG: bcn:Bcen_1168 hypothetical protein; hypothetical protein 2883850 4688430 Pnap_2738 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982961.1 2882777 R 365044 CDS YP_982962.1 121605633 4688452 complement(2883968..2885317) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_01435 signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2885317 4688452 Pnap_2739 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_982962.1 2883968 R 365044 CDS YP_982963.1 121605634 4688472 complement(2885314..2886009) 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_01436 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two component transcriptional regulator 2886009 4688472 Pnap_2740 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_982963.1 2885314 R 365044 CDS YP_982964.1 121605635 4688471 complement(2886108..2886578) 1 NC_008781.1 hypothetical protein 2886578 4688471 Pnap_2741 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982964.1 2886108 R 365044 CDS YP_982965.1 121605636 4688480 complement(2886787..2887191) 1 NC_008781.1 PFAM: Class I peptide chain release factor; KEGG: pol:Bpro_1858 class I peptide chain release factor; peptidyl-tRNA hydrolase domain-containing protein 2887191 4688480 Pnap_2742 Polaromonas naphthalenivorans CJ2 peptidyl-tRNA hydrolase domain-containing protein YP_982965.1 2886787 R 365044 CDS YP_982966.1 121605637 4688478 2887270..2887953 1 NC_008781.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_4494 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase 2887953 4688478 Pnap_2743 Polaromonas naphthalenivorans CJ2 HAD family hydrolase YP_982966.1 2887270 D 365044 CDS YP_982967.1 121605638 4688489 complement(2888079..2889083) 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bpa:BPP2663 short chain dehydrogenase; short chain dehydrogenase 2889083 4688489 Pnap_2744 Polaromonas naphthalenivorans CJ2 short chain dehydrogenase YP_982967.1 2888079 R 365044 CDS YP_982968.1 121605639 4688496 complement(2889188..2890285) 1 NC_008781.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2890285 4688496 Pnap_2745 Polaromonas naphthalenivorans CJ2 chorismate synthase YP_982968.1 2889188 R 365044 CDS YP_982969.1 121605640 4688737 2890549..2891454 1 NC_008781.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: pcr:Pcryo_0924 transcriptional regulator-like; helix-turn-helix, type 11 domain-containing protein 2891454 4688737 Pnap_2746 Polaromonas naphthalenivorans CJ2 helix-turn-helix, type 11 domain-containing protein YP_982969.1 2890549 D 365044 CDS YP_982970.1 121605641 4688377 2891628..2891936 1 NC_008781.1 PFAM: protein of unknown function UPF0153; KEGG: hpj:jhp0701 hypothetical protein; hypothetical protein 2891936 4688377 Pnap_2747 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982970.1 2891628 D 365044 CDS YP_982971.1 121605642 4688711 2891992..2892852 1 NC_008781.1 KEGG: aci:ACIAD1443 hypothetical protein; hypothetical protein 2892852 4688711 Pnap_2748 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982971.1 2891992 D 365044 CDS YP_982972.1 121605643 4688386 2892985..2893512 1 NC_008781.1 hypothetical protein 2893512 4688386 Pnap_2749 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982972.1 2892985 D 365044 CDS YP_982973.1 121605644 4688393 2893505..2895325 1 NC_008781.1 KEGG: aci:ACIAD1444 hypothetical protein; hypothetical protein 2895325 4688393 Pnap_2750 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982973.1 2893505 D 365044 CDS YP_982974.1 121605645 4688488 2895322..2896971 1 NC_008781.1 PFAM: GTP-binding protein, HSR1-related; KEGG: ilo:IL0535 protein containing N-terminal predicted GTPase domain; HSR1-like GTP-binding protein 2896971 4688488 Pnap_2751 Polaromonas naphthalenivorans CJ2 HSR1-like GTP-binding protein YP_982974.1 2895322 D 365044 CDS YP_982975.1 121605646 4688484 2897176..2898150 1 NC_008781.1 KEGG: mca:MCA0729 hypothetical protein; hypothetical protein 2898150 4688484 Pnap_2752 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982975.1 2897176 D 365044 CDS YP_982976.1 121605647 4688696 2898212..2898601 1 NC_008781.1 KEGG: rpe:RPE_2166 hypothetical protein; hypothetical protein 2898601 4688696 Pnap_2753 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982976.1 2898212 D 365044 CDS YP_982977.1 121605648 4688395 2898696..2899121 1 NC_008781.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_1841 cupin 2, conserved barrel; cupin 2899121 4688395 Pnap_2754 Polaromonas naphthalenivorans CJ2 cupin YP_982977.1 2898696 D 365044 CDS YP_982978.1 121605649 4688406 complement(2899137..2899793) 1 NC_008781.1 KEGG: pol:Bpro_1840 glutathione S-transferase-like; glutathione S-transferase-like protein 2899793 4688406 Pnap_2755 Polaromonas naphthalenivorans CJ2 glutathione S-transferase-like protein YP_982978.1 2899137 R 365044 CDS YP_982979.1 121605650 4688444 2899971..2901200 1 NC_008781.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_1839 intracellular polyhydroxyalkanoate depolymerase; polyhydroxyalkanoate depolymerase 2901200 4688444 Pnap_2756 Polaromonas naphthalenivorans CJ2 polyhydroxyalkanoate depolymerase YP_982979.1 2899971 D 365044 CDS YP_982980.1 121605651 4688514 complement(2901240..2901695) 1 NC_008781.1 PFAM: CBS domain containing protein; KEGG: pol:Bpro_1837 CBS domain; hypothetical protein 2901695 4688514 Pnap_2757 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982980.1 2901240 R 365044 CDS YP_982981.1 121605652 4688466 2901877..2903232 1 NC_008781.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 2903232 4688466 Pnap_2758 Polaromonas naphthalenivorans CJ2 O-acetylhomoserine aminocarboxypropyltransferase YP_982981.1 2901877 D 365044 CDS YP_982982.1 121605653 4688500 2903232..2904050 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_3159 alpha/beta hydrolase; alpha/beta hydrolase fold protein 2904050 4688500 Pnap_2759 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold protein YP_982982.1 2903232 D 365044 CDS YP_982983.1 121605654 4688422 complement(2904096..2905004) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bpa:BPP2885 probable LysR-family transcriptional regulator; LysR family transcriptional regulator 2905004 4688422 Pnap_2760 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_982983.1 2904096 R 365044 CDS YP_982984.1 121605655 4688300 2905126..2906502 1 NC_008781.1 PFAM: protein of unknown function DUF1446; KEGG: bbr:BB3206 hypothetical protein; hypothetical protein 2906502 4688300 Pnap_2761 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982984.1 2905126 D 365044 CDS YP_982985.1 121605656 4687924 2906499..2906864 1 NC_008781.1 KEGG: bbr:BB3205 hypothetical protein; hypothetical protein 2906864 4687924 Pnap_2762 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982985.1 2906499 D 365044 CDS YP_982986.1 121605657 4687921 2906898..2907866 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5882 uncharacterized protein UPF0065; hypothetical protein 2907866 4687921 Pnap_2763 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982986.1 2906898 D 365044 CDS YP_982987.1 121605658 4688253 complement(2907905..2909140) 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB 2909140 4688253 Pnap_2764 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_982987.1 2907905 R 365044 CDS YP_982988.1 121605659 4688243 complement(2909418..2910275) 1 NC_008781.1 PFAM: Silent information regulator protein Sir2; KEGG: dar:Daro_0006 silent information regulator protein Sir2; silent information regulator protein Sir2 2910275 4688243 Pnap_2765 Polaromonas naphthalenivorans CJ2 silent information regulator protein Sir2 YP_982988.1 2909418 R 365044 CDS YP_982989.1 121605660 4688252 complement(2910333..2910626) 1 NC_008781.1 KEGG: rso:RSc0133 hypothetical protein; hypothetical protein 2910626 4688252 Pnap_2766 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982989.1 2910333 R 365044 CDS YP_982990.1 121605661 4687915 complement(2910657..2912042) 1 NC_008781.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: pol:Bpro_1506 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 2912042 4687915 Pnap_2767 Polaromonas naphthalenivorans CJ2 FAD linked oxidase domain-containing protein YP_982990.1 2910657 R 365044 CDS YP_982991.1 121605662 4687906 complement(2912202..2912594) 1 NC_008781.1 KEGG: pol:Bpro_1834 hypothetical protein; hypothetical protein 2912594 4687906 Pnap_2768 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982991.1 2912202 R 365044 CDS YP_982992.1 121605663 4687887 complement(2912679..2913893) 1 NC_008781.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_1830 ribonuclease BN, putative; putative ribonuclease BN 2913893 4687887 Pnap_2769 Polaromonas naphthalenivorans CJ2 putative ribonuclease BN YP_982992.1 2912679 R 365044 CDS YP_982993.1 121605664 4687870 2913914..2914306 1 NC_008781.1 KEGG: pol:Bpro_1829 membrane protein-like; membrane protein 2914306 4687870 Pnap_2770 Polaromonas naphthalenivorans CJ2 membrane protein YP_982993.1 2913914 D 365044 CDS YP_982994.1 121605665 4687884 2914303..2915811 1 NC_008781.1 PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_1828 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 2915811 4687884 Pnap_2771 Polaromonas naphthalenivorans CJ2 FAD linked oxidase domain-containing protein YP_982994.1 2914303 D 365044 CDS YP_982995.1 121605666 4687842 2915860..2916690 1 NC_008781.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 2916690 thyA 4687842 thyA Polaromonas naphthalenivorans CJ2 thymidylate synthase YP_982995.1 2915860 D 365044 CDS YP_982996.1 121605667 4687860 2916690..2917190 1 NC_008781.1 PFAM: dihydrofolate reductase region; KEGG: pol:Bpro_1822 dihydrofolate reductase; dihydrofolate reductase 2917190 4687860 Pnap_2773 Polaromonas naphthalenivorans CJ2 dihydrofolate reductase YP_982996.1 2916690 D 365044 CDS YP_982997.1 121605668 4687867 2917187..2918221 1 NC_008781.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO0471 hypothetical dioxygenase; 2-nitropropane dioxygenase 2918221 4687867 Pnap_2774 Polaromonas naphthalenivorans CJ2 2-nitropropane dioxygenase YP_982997.1 2917187 D 365044 CDS YP_982998.1 121605669 4687835 2918347..2918928 1 NC_008781.1 KEGG: pol:Bpro_1821 putative transmembrane protein; hypothetical protein 2918928 4687835 Pnap_2775 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_982998.1 2918347 D 365044 CDS YP_982999.1 121605670 4687832 2918973..2919755 1 NC_008781.1 KEGG: pol:Bpro_1820 exodeoxyribonuclease III (xth); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 2919755 4687832 Pnap_2776 Polaromonas naphthalenivorans CJ2 exodeoxyribonuclease III Xth YP_982999.1 2918973 D 365044 CDS YP_983000.1 121605671 4687830 complement(2919802..2921352) 1 NC_008781.1 KEGG: pol:Bpro_1810 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 2921352 4687830 Pnap_2777 Polaromonas naphthalenivorans CJ2 nitrogen metabolism transcriptional regulator NtrC YP_983000.1 2919802 R 365044 CDS YP_983001.1 121605672 4687792 complement(2921411..2922508) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1809 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase NtrB 2922508 4687792 Pnap_2778 Polaromonas naphthalenivorans CJ2 signal transduction histidine kinase NtrB YP_983001.1 2921411 R 365044 CDS YP_983002.1 121605673 4687793 complement(2922531..2923049) 1 NC_008781.1 KEGG: pol:Bpro_1808 conserved hypothetical signal peptide protein; putative signal peptide protein 2923049 4687793 Pnap_2779 Polaromonas naphthalenivorans CJ2 putative signal peptide protein YP_983002.1 2922531 R 365044 CDS YP_983003.1 121605674 4687597 complement(2923247..2924662) 1 NC_008781.1 KEGG: pol:Bpro_1807 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; glutamine synthetase 2924662 4687597 Pnap_2780 Polaromonas naphthalenivorans CJ2 glutamine synthetase YP_983003.1 2923247 R 365044 CDS YP_983004.1 121605675 4687763 complement(2924892..2925800) 1 NC_008781.1 PFAM: molybdopterin binding domain; KEGG: pol:Bpro_1806 molybdopterin binding domain; molybdopterin-binding domain-containing protein 2925800 4687763 Pnap_2781 Polaromonas naphthalenivorans CJ2 molybdopterin-binding domain-containing protein YP_983004.1 2924892 R 365044 CDS YP_983005.1 121605676 4687217 complement(2925818..2926726) 1 NC_008781.1 KEGG: pol:Bpro_1805 putative transmembrane protein; hypothetical protein 2926726 4687217 Pnap_2782 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983005.1 2925818 R 365044 CDS YP_983006.1 121605677 4687618 complement(2926734..2927699) 1 NC_008781.1 KEGG: pol:Bpro_1804 hypothetical protein; hypothetical protein 2927699 4687618 Pnap_2783 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983006.1 2926734 R 365044 CDS YP_983007.1 121605678 4687614 complement(2927705..2928586) 1 NC_008781.1 PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1803 polysaccharide deacetylase; polysaccharide deacetylase 2928586 4687614 Pnap_2784 Polaromonas naphthalenivorans CJ2 polysaccharide deacetylase YP_983007.1 2927705 R 365044 CDS YP_983008.1 121605679 4687606 complement(2928552..2929577) 1 NC_008781.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pol:Bpro_1802 hypothetical protein; hypothetical protein 2929577 4687606 Pnap_2785 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983008.1 2928552 R 365044 CDS YP_983009.1 121605680 4687633 complement(2929717..2930451) 1 NC_008781.1 PFAM: pseudouridine synthase; KEGG: pol:Bpro_1800 pseudouridine synthase, Rsu; pseudouridine synthase 2930451 4687633 Pnap_2786 Polaromonas naphthalenivorans CJ2 pseudouridine synthase YP_983009.1 2929717 R 365044 CDS YP_983010.1 121605681 4689897 complement(2930913..2931578) 1 NC_008781.1 KEGG: pol:Bpro_1798 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 2931578 4689897 Pnap_2787 Polaromonas naphthalenivorans CJ2 phosphoglycolate phosphatase YP_983010.1 2930913 R 365044 CDS YP_983011.1 121605682 4687621 complement(2931624..2932340) 1 NC_008781.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2932340 4687621 Pnap_2788 Polaromonas naphthalenivorans CJ2 3-demethylubiquinone-9 3-methyltransferase YP_983011.1 2931624 R 365044 CDS YP_983012.1 121605683 4687637 complement(2932409..2933041) 1 NC_008781.1 PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1796 OmpA/MotB; OmpA/MotB domain-containing protein 2933041 4687637 Pnap_2789 Polaromonas naphthalenivorans CJ2 OmpA/MotB domain-containing protein YP_983012.1 2932409 R 365044 CDS YP_983013.1 121605684 4687620 2933298..2935967 1 NC_008781.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2935967 4687620 Pnap_2790 Polaromonas naphthalenivorans CJ2 DNA gyrase subunit A YP_983013.1 2933298 D 365044 CDS YP_983014.1 121605685 4687643 2935964..2936536 1 NC_008781.1 KEGG: pol:Bpro_1794 hypothetical protein; hypothetical protein 2936536 4687643 Pnap_2791 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983014.1 2935964 D 365044 CDS YP_983015.1 121605686 4687670 2936533..2937639 1 NC_008781.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2937639 4687670 Pnap_2792 Polaromonas naphthalenivorans CJ2 phosphoserine aminotransferase YP_983015.1 2936533 D 365044 CDS YP_983016.1 121605687 4687700 2937641..2938723 1 NC_008781.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pol:Bpro_1792 chorismate mutase; chorismate mutase 2938723 4687700 Pnap_2793 Polaromonas naphthalenivorans CJ2 chorismate mutase YP_983016.1 2937641 D 365044 CDS YP_983017.1 121605688 4688396 2938786..2939664 1 NC_008781.1 PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pol:Bpro_1791 prephenate dehydrogenase; prephenate dehydrogenase 2939664 4688396 Pnap_2794 Polaromonas naphthalenivorans CJ2 prephenate dehydrogenase YP_983017.1 2938786 D 365044 CDS YP_983018.1 121605689 4687699 2939676..2941679 1 NC_008781.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase 2941679 4687699 Pnap_2795 Polaromonas naphthalenivorans CJ2 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase YP_983018.1 2939676 D 365044 CDS YP_983019.1 121605690 4687706 2941847..2943532 1 NC_008781.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2943532 rpsA 4687706 rpsA Polaromonas naphthalenivorans CJ2 30S ribosomal protein S1 YP_983019.1 2941847 D 365044 CDS YP_983020.1 121605691 4687701 2943607..2943921 1 NC_008781.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_1788 integration host factor, beta subunit; integration host factor subunit beta 2943921 4687701 Pnap_2797 Polaromonas naphthalenivorans CJ2 integration host factor subunit beta YP_983020.1 2943607 D 365044 CDS YP_983021.1 121605692 4687718 2943982..2944269 1 NC_008781.1 KEGG: pol:Bpro_1787 hypothetical protein; hypothetical protein 2944269 4687718 Pnap_2798 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983021.1 2943982 D 365044 CDS YP_983022.1 121605693 4688517 2944259..2945404 1 NC_008781.1 SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1786 tetratricopeptide region; hypothetical protein 2945404 4688517 Pnap_2799 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983022.1 2944259 D 365044 CDS YP_983023.1 121605694 4687641 2945424..2946371 1 NC_008781.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: pol:Bpro_1785 RfaE bifunctional protein, domain I; bifunctional protein RfaE 2946371 4687641 Pnap_2800 Polaromonas naphthalenivorans CJ2 bifunctional protein RfaE YP_983023.1 2945424 D 365044 CDS YP_983024.1 121605695 4688421 2946405..2947412 1 NC_008781.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: pol:Bpro_1784 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 2947412 4688421 Pnap_2801 Polaromonas naphthalenivorans CJ2 ADP-L-glycero-D-manno-heptose-6-epimerase YP_983024.1 2946405 D 365044 CDS YP_983025.1 121605696 4688362 2947555..2947914 1 NC_008781.1 KEGG: pol:Bpro_1783 hypothetical protein; hypothetical protein 2947914 4688362 Pnap_2802 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983025.1 2947555 D 365044 CDS YP_983026.1 121605697 4687635 complement(2947986..2948723) 1 NC_008781.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2948723 fabG 4687635 fabG Polaromonas naphthalenivorans CJ2 3-ketoacyl-ACP reductase YP_983026.1 2947986 R 365044 CDS YP_983027.1 121605698 4687599 complement(2948838..2950016) 1 NC_008781.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 2950016 4687599 Pnap_2804 Polaromonas naphthalenivorans CJ2 acetyl-CoA acetyltransferase YP_983027.1 2948838 R 365044 CDS YP_983028.1 121605699 4687673 complement(2950129..2951892) 1 NC_008781.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pol:Bpro_2139 poly(R)-hydroxyalkanoic acid synthase, class I; poly(R)-hydroxyalkanoic acid synthase 2951892 4687673 Pnap_2805 Polaromonas naphthalenivorans CJ2 poly(R)-hydroxyalkanoic acid synthase YP_983028.1 2950129 R 365044 CDS YP_983029.1 121605700 4687571 complement(2952242..2953072) 1 NC_008781.1 PFAM: protein of unknown function DUF152; KEGG: pol:Bpro_2137 protein of unknown function DUF152; hypothetical protein 2953072 4687571 Pnap_2806 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983029.1 2952242 R 365044 CDS YP_983030.1 121605701 4687567 complement(2953075..2953725) 1 NC_008781.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2136 maleylacetoacetate isomerase; maleylacetoacetate isomerase 2953725 4687567 Pnap_2807 Polaromonas naphthalenivorans CJ2 maleylacetoacetate isomerase YP_983030.1 2953075 R 365044 CDS YP_983031.1 121605702 4687552 complement(2953780..2954397) 1 NC_008781.1 KEGG: noc:Noc_0134 hypothetical protein; hypothetical protein 2954397 4687552 Pnap_2808 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983031.1 2953780 R 365044 CDS YP_983032.1 121605703 4687539 complement(2954452..2955315) 1 NC_008781.1 hypothetical protein 2955315 4687539 Pnap_2809 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983032.1 2954452 R 365044 CDS YP_983033.1 121605704 4687551 complement(2955312..2955869) 1 NC_008781.1 hypothetical protein 2955869 4687551 Pnap_2810 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983033.1 2955312 R 365044 CDS YP_983034.1 121605705 4687375 complement(2955913..2956662) 1 NC_008781.1 KEGG: noc:Noc_1486 ABC-type phosphate/phosphonate transport system periplasmic component; phosphate/phosphonate ABC transporter periplasmic protein 2956662 4687375 Pnap_2811 Polaromonas naphthalenivorans CJ2 phosphate/phosphonate ABC transporter periplasmic protein YP_983034.1 2955913 R 365044 CDS YP_983035.1 121605706 4687650 complement(2956659..2957159) 1 NC_008781.1 KEGG: noc:Noc_1487 PAS domain protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 2957159 4687650 Pnap_2812 Polaromonas naphthalenivorans CJ2 putative PAS/PAC sensor protein YP_983035.1 2956659 R 365044 CDS YP_983036.1 121605707 4687431 complement(2957170..2957532) 1 NC_008781.1 PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 Roadblock/LC7; roadblock/LC7 family protein 2957532 4687431 Pnap_2813 Polaromonas naphthalenivorans CJ2 roadblock/LC7 family protein YP_983036.1 2957170 R 365044 CDS YP_983037.1 121605708 4686854 2957772..2958074 1 NC_008781.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pol:Bpro_2130 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 2958074 4686854 Pnap_2814 Polaromonas naphthalenivorans CJ2 antibiotic biosynthesis monooxygenase YP_983037.1 2957772 D 365044 CDS YP_983038.1 121605709 4686848 2958159..2959199 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2127 uncharacterized protein UPF0065; hypothetical protein 2959199 4686848 Pnap_2815 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983038.1 2958159 D 365044 CDS YP_983039.1 121605710 4686858 2959237..2959932 1 NC_008781.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_2124 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 2959932 4686858 Pnap_2816 Polaromonas naphthalenivorans CJ2 fumarylacetoacetate (FAA) hydrolase YP_983039.1 2959237 D 365044 CDS YP_983040.1 121605711 4686862 2960064..2960669 1 NC_008781.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_2117 NUDIX hydrolase; NUDIX hydrolase 2960669 4686862 Pnap_2817 Polaromonas naphthalenivorans CJ2 NUDIX hydrolase YP_983040.1 2960064 D 365044 CDS YP_983041.1 121605712 4686852 2960751..2961806 1 NC_008781.1 Required for efficient pilin antigenic variation; recombination associated protein 2961806 rdgC 4686852 rdgC Polaromonas naphthalenivorans CJ2 recombination associated protein YP_983041.1 2960751 D 365044 CDS YP_983042.1 121605713 4686837 2961933..2962265 1 NC_008781.1 KEGG: pol:Bpro_3013 hypothetical protein; hypothetical protein 2962265 4686837 Pnap_2819 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983042.1 2961933 D 365044 CDS YP_983043.1 121605714 4686865 complement(2962333..2963691) 1 NC_008781.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0682 helix-turn-helix, fis-type; sigma-54 dependent trancsriptional regulator 2963691 4686865 Pnap_2820 Polaromonas naphthalenivorans CJ2 sigma-54 dependent trancsriptional regulator YP_983043.1 2962333 R 365044 CDS YP_983044.1 121605715 4686871 2964057..2964704 1 NC_008781.1 PFAM: beta-lactamase domain protein; KEGG: mfa:Mfla_1733 beta-lactamase-like protein; beta-lactamase domain-containing protein 2964704 4686871 Pnap_2821 Polaromonas naphthalenivorans CJ2 beta-lactamase domain-containing protein YP_983044.1 2964057 D 365044 CDS YP_983045.1 121605716 4686878 2964742..2966166 1 NC_008781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_1934 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 2966166 4686878 Pnap_2822 Polaromonas naphthalenivorans CJ2 4Fe-4S ferredoxin YP_983045.1 2964742 D 365044 CDS YP_983046.1 121605717 4686841 2966499..2967395 1 NC_008781.1 KEGG: rpc:RPC_1203 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like; dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein 2967395 4686841 Pnap_2823 Polaromonas naphthalenivorans CJ2 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein YP_983046.1 2966499 D 365044 CDS YP_983047.1 121605718 4686890 2967509..2968369 1 NC_008781.1 PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_B0675 putative metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 2968369 4686890 Pnap_2824 Polaromonas naphthalenivorans CJ2 beta-lactamase domain-containing protein YP_983047.1 2967509 D 365044 CDS YP_983048.1 121605719 4686880 complement(2968451..2969440) 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: bmb:BruAb2_0829 cytochrome c family protein; class I cytochrome c 2969440 4686880 Pnap_2825 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_983048.1 2968451 R 365044 CDS YP_983049.1 121605720 4686902 complement(2969564..2969902) 1 NC_008781.1 PFAM: regulatory protein, ArsR; KEGG: tel:tll0769 transcriptional regulator; regulatory protein ArsR 2969902 4686902 Pnap_2826 Polaromonas naphthalenivorans CJ2 regulatory protein ArsR YP_983049.1 2969564 R 365044 CDS YP_983050.1 121605721 4686882 2970068..2971126 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bte:BTH_II0059 efflux transporter, RND family, MFP subunit, putative; RND family efflux transporter MFP subunit 2971126 4686882 Pnap_2827 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_983050.1 2970068 D 365044 CDS YP_983051.1 121605722 4687353 2971128..2974367 1 NC_008781.1 PFAM: acriflavin resistance protein; KEGG: bte:BTH_II0058 transporter, AcrB/D/F family; acriflavin resistance protein 2974367 4687353 Pnap_2828 Polaromonas naphthalenivorans CJ2 acriflavin resistance protein YP_983051.1 2971128 D 365044 CDS YP_983052.1 121605723 4686915 2974371..2974580 1 NC_008781.1 KEGG: bte:BTH_II0057 hypothetical protein; hypothetical protein 2974580 4686915 Pnap_2829 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983052.1 2974371 D 365044 CDS YP_983053.1 121605724 4686921 2974594..2975961 1 NC_008781.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bte:BTH_II0056 probable porin (omp) abc transporter protein; TolC family type I secretion outer membrane protein 2975961 4686921 Pnap_2830 Polaromonas naphthalenivorans CJ2 TolC family type I secretion outer membrane protein YP_983053.1 2974594 D 365044 CDS YP_983054.1 121605725 4686930 2975999..2977270 1 NC_008781.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_3759 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2977270 4686930 Pnap_2831 Polaromonas naphthalenivorans CJ2 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_983054.1 2975999 D 365044 CDS YP_983055.1 121605726 4686908 2977310..2977639 1 NC_008781.1 PFAM: Rhodanese domain protein; KEGG: vfi:VFA0125 rhodanese-related sulfurtransferase; rhodanese domain-containing protein 2977639 4686908 Pnap_2832 Polaromonas naphthalenivorans CJ2 rhodanese domain-containing protein YP_983055.1 2977310 D 365044 CDS YP_983056.1 121605727 4686955 2977659..2978135 1 NC_008781.1 PFAM: OsmC family protein; KEGG: bur:Bcep18194_B1521 hypothetical protein; OsmC family protein 2978135 4686955 Pnap_2833 Polaromonas naphthalenivorans CJ2 OsmC family protein YP_983056.1 2977659 D 365044 CDS YP_983057.1 121605728 4686948 2978132..2978512 1 NC_008781.1 PFAM: Rhodanese domain protein; KEGG: noc:Noc_2007 metallo-beta-lactamase family protein; rhodanese domain-containing protein 2978512 4686948 Pnap_2834 Polaromonas naphthalenivorans CJ2 rhodanese domain-containing protein YP_983057.1 2978132 D 365044 CDS YP_983058.1 121605729 4686904 complement(2978727..2979464) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3625 ABC transporter related; ABC transporter-like protein 2979464 4686904 Pnap_2835 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983058.1 2978727 R 365044 CDS YP_983059.1 121605730 4686947 complement(2979461..2980654) 1 NC_008781.1 PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3624 protein of unknown function DUF214; hypothetical protein 2980654 4686947 Pnap_2836 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983059.1 2979461 R 365044 CDS YP_983060.1 121605731 4686935 complement(2980651..2981871) 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3623 secretion protein HlyD; RND family efflux transporter MFP subunit 2981871 4686935 Pnap_2837 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_983060.1 2980651 R 365044 CDS YP_983061.1 121605732 4686956 complement(2981868..2982428) 1 NC_008781.1 KEGG: rfr:Rfer_3622 transcriptional regulator, TetR family; hypothetical protein 2982428 4686956 Pnap_2838 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983061.1 2981868 R 365044 CDS YP_983062.1 121605733 4686929 complement(2982442..2983362) 1 NC_008781.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_3644 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 2983362 4686929 Pnap_2839 Polaromonas naphthalenivorans CJ2 cation diffusion facilitator family transporter YP_983062.1 2982442 R 365044 CDS YP_983063.1 121605734 4686977 complement(2983540..2983959) 1 NC_008781.1 hypothetical protein 2983959 4686977 Pnap_2840 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983063.1 2983540 R 365044 CDS YP_983064.1 121605735 4689968 complement(2984212..2985534) 1 NC_008781.1 KEGG: eba:ebA6677 hypothetical protein; hypothetical protein 2985534 4689968 Pnap_2842 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983064.1 2984212 R 365044 CDS YP_983065.1 121605736 4686970 complement(2985977..2986216) 1 NC_008781.1 PFAM: glutaredoxin; KEGG: rfr:Rfer_3642 thiol-disulfide isomerase and thioredoxins; glutaredoxin 2986216 4686970 Pnap_2843 Polaromonas naphthalenivorans CJ2 glutaredoxin YP_983065.1 2985977 R 365044 CDS YP_983066.1 121605737 4686965 complement(2986274..2987320) 1 NC_008781.1 PFAM: permease; KEGG: rfr:Rfer_3641 permease; permease 2987320 4686965 Pnap_2844 Polaromonas naphthalenivorans CJ2 permease YP_983066.1 2986274 R 365044 CDS YP_983067.1 121605738 4686974 complement(2987489..2988013) 1 NC_008781.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_3639 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 2988013 4686974 Pnap_2845 Polaromonas naphthalenivorans CJ2 ECF subfamily RNA polymerase sigma-24 factor YP_983067.1 2987489 R 365044 CDS YP_983068.1 121605739 4686952 2988235..2988486 1 NC_008781.1 KEGG: mma:MM2981 type I restriction-modification system specificity subunit; hypothetical protein 2988486 4686952 Pnap_2846 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983068.1 2988235 D 365044 CDS YP_983069.1 121605740 4690040 complement(2988838..2989326) 1 NC_008781.1 PFAM: regulatory protein, MerR; KEGG: pol:Bpro_2109 transcriptional regulator, MerR family; MerR family transcriptional regulator 2989326 4690040 Pnap_2847 Polaromonas naphthalenivorans CJ2 MerR family transcriptional regulator YP_983069.1 2988838 R 365044 CDS YP_983070.1 121605741 4687063 complement(2989392..2989763) 1 NC_008781.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2989763 ihfA 4687063 ihfA Polaromonas naphthalenivorans CJ2 integration host factor subunit alpha YP_983070.1 2989392 R 365044 CDS YP_983071.1 121605742 4687058 complement(2989814..2992240) 1 NC_008781.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2992240 pheT 4687058 pheT Polaromonas naphthalenivorans CJ2 phenylalanyl-tRNA synthetase subunit beta YP_983071.1 2989814 R 365044 CDS YP_983072.1 121605743 4687308 complement(2992275..2993339) 1 NC_008781.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2993339 pheS 4687308 pheS Polaromonas naphthalenivorans CJ2 phenylalanyl-tRNA synthetase subunit alpha YP_983072.1 2992275 R 365044 CDS YP_983073.1 121605744 4687077 complement(2993513..2993872) 1 NC_008781.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2993872 rplT 4687077 rplT Polaromonas naphthalenivorans CJ2 50S ribosomal protein L20 YP_983073.1 2993513 R 365044 CDS YP_983074.1 121605745 4687592 complement(2993897..2994100) 1 NC_008781.1 PFAM: ribosomal protein L35; KEGG: pol:Bpro_2104 ribosomal protein L35; 50S ribosomal protein L35 2994100 rpmI 4687592 rpmI Polaromonas naphthalenivorans CJ2 50S ribosomal protein L35 YP_983074.1 2993897 R 365044 CDS YP_983075.1 121605746 4687067 complement(2994336..2994860) 1 NC_008781.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: pol:Bpro_2103 translation initiation factor IF-3; translation initiation factor IF-3 2994860 4687067 Pnap_2853 Polaromonas naphthalenivorans CJ2 translation initiation factor IF-3 YP_983075.1 2994336 R 365044 CDS YP_983076.1 121605747 4687071 complement(2995021..2996928) 1 NC_008781.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2996928 thrS 4687071 thrS Polaromonas naphthalenivorans CJ2 threonyl-tRNA synthetase YP_983076.1 2995021 R 365044 CDS YP_983077.1 121605748 4686923 complement(2997030..2998349) 1 NC_008781.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: pol:Bpro_2101 isocitrate lyase; isocitrate lyase 2998349 4686923 Pnap_2855 Polaromonas naphthalenivorans CJ2 isocitrate lyase YP_983077.1 2997030 R 365044 CDS YP_983078.1 121605749 4690184 complement(2998746..2999048) 1 NC_008781.1 KEGG: noc:Noc_1587 transposase; hypothetical protein 2999048 4690184 Pnap_2857 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983078.1 2998746 R 365044 CDS YP_983079.1 121605750 4686903 2999145..3000119 1 NC_008781.1 PFAM: Insertion element protein; KEGG: neu:NE1698 hypothetical protein; insertion element protein 3000119 4686903 Pnap_2858 Polaromonas naphthalenivorans CJ2 insertion element protein YP_983079.1 2999145 D 365044 CDS YP_983080.1 121605751 4686942 complement(3000503..3001363) 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0355 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3001363 4686942 Pnap_2859 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_983080.1 3000503 R 365044 CDS YP_983081.1 121605752 4686937 complement(3001374..3002291) 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0354 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3002291 4686937 Pnap_2860 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_983081.1 3001374 R 365044 CDS YP_983082.1 121605753 4686946 complement(3002308..3003408) 1 NC_008781.1 KEGG: rfr:Rfer_0353 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 3003408 4686946 Pnap_2861 Polaromonas naphthalenivorans CJ2 spermidine/putrescine ABC transporter ATPase YP_983082.1 3002308 R 365044 CDS YP_983083.1 121605754 4687075 complement(3003498..3004658) 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_0352 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3004658 4687075 Pnap_2862 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_983083.1 3003498 R 365044 CDS YP_983084.1 121605755 4686875 complement(3004789..3006186) 1 NC_008781.1 PFAM: aminotransferase class-III; KEGG: rfr:Rfer_0351 aminotransferase class-III; putative aminotransferase 3006186 4686875 Pnap_2863 Polaromonas naphthalenivorans CJ2 putative aminotransferase YP_983084.1 3004789 R 365044 CDS YP_983085.1 121605756 4686815 complement(3006230..3007609) 1 NC_008781.1 PFAM: glutamine synthetase, catalytic region; KEGG: rfr:Rfer_0350 glutamate--ammonia ligase; glutamate--ammonia ligase 3007609 4686815 Pnap_2864 Polaromonas naphthalenivorans CJ2 glutamate--ammonia ligase YP_983085.1 3006230 R 365044 CDS YP_983086.1 121605757 4686788 complement(3007659..3008429) 1 NC_008781.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: cvi:CV2023 probable amidophosphoribosyltransferase; peptidase C26 3008429 4686788 Pnap_2865 Polaromonas naphthalenivorans CJ2 peptidase C26 YP_983086.1 3007659 R 365044 CDS YP_983087.1 121605758 4686796 3008642..3010120 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rfr:Rfer_0348 transcriptional regulator, GntR family; GntR family transcriptional regulator 3010120 4686796 Pnap_2866 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_983087.1 3008642 D 365044 CDS YP_983088.1 121605759 4686799 3010329..3010832 1 NC_008781.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY3675 hypothetical protein; N-acetyltransferase GCN5 3010832 4686799 Pnap_2867 Polaromonas naphthalenivorans CJ2 N-acetyltransferase GCN5 YP_983088.1 3010329 D 365044 CDS YP_983089.1 121605760 4690176 3011364..3012326 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_2099 protein of unknown function DUF6, transmembrane; hypothetical protein 3012326 4690176 Pnap_2869 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983089.1 3011364 D 365044 CDS YP_983090.1 121605761 4686762 complement(3012354..3013874) 1 NC_008781.1 catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 3013874 4686762 Pnap_2870 Polaromonas naphthalenivorans CJ2 malonyl-CoA synthase YP_983090.1 3012354 R 365044 CDS YP_983091.1 121605762 4686746 complement(3013912..3014694) 1 NC_008781.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_2093 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3014694 4686746 Pnap_2871 Polaromonas naphthalenivorans CJ2 enoyl-CoA hydratase/isomerase YP_983091.1 3013912 R 365044 CDS YP_983092.1 121605763 4686739 complement(3014719..3015723) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2092 twin-arginine translocation pathway signal; hypothetical protein 3015723 4686739 Pnap_2872 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983092.1 3014719 R 365044 CDS YP_983093.1 121605764 4686741 complement(3015771..3017258) 1 NC_008781.1 PFAM: Malonyl-CoA decarboxylase; KEGG: pol:Bpro_2091 malonyl-CoA decarboxylase; malonyl-CoA decarboxylase 3017258 4686741 Pnap_2873 Polaromonas naphthalenivorans CJ2 malonyl-CoA decarboxylase YP_983093.1 3015771 R 365044 CDS YP_983094.1 121605765 4686735 complement(3017362..3018177) 1 NC_008781.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3018177 4686735 Pnap_2874 Polaromonas naphthalenivorans CJ2 prolipoprotein diacylglyceryl transferase YP_983094.1 3017362 R 365044 CDS YP_983095.1 121605766 4686731 complement(3018244..3022029) 1 NC_008781.1 KEGG: bxe:Bxe_B1311 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 3022029 4686731 Pnap_2875 Polaromonas naphthalenivorans CJ2 multi-sensor hybrid histidine kinase YP_983095.1 3018244 R 365044 CDS YP_983096.1 121605767 4686734 complement(3022209..3023141) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2053 transcriptional regulator, LysR family; LysR family transcriptional regulator 3023141 4686734 Pnap_2876 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_983096.1 3022209 R 365044 CDS YP_983097.1 121605768 4686715 3023247..3024941 1 NC_008781.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 3024941 4686715 Pnap_2877 Polaromonas naphthalenivorans CJ2 dihydroxy-acid dehydratase YP_983097.1 3023247 D 365044 CDS YP_983098.1 121605769 4686732 complement(3025051..3025317) 1 NC_008781.1 KEGG: pol:Bpro_2051 hypothetical protein; hypothetical protein 3025317 4686732 Pnap_2878 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983098.1 3025051 R 365044 CDS YP_983099.1 121605770 4686712 3025421..3025741 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_2050 cytochrome c, class I; class I cytochrome c 3025741 4686712 Pnap_2879 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_983099.1 3025421 D 365044 CDS YP_983100.1 121605771 4686703 complement(3025862..3027856) 1 NC_008781.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_2049 acetate--CoA ligase; acetate--CoA ligase 3027856 4686703 Pnap_2880 Polaromonas naphthalenivorans CJ2 acetate--CoA ligase YP_983100.1 3025862 R 365044 CDS YP_983101.1 121605772 4686701 3028015..3028617 1 NC_008781.1 PFAM: Uncharacterized protein UPF0114; KEGG: pol:Bpro_2048 uncharacterized protein UPF0114; hypothetical protein 3028617 4686701 Pnap_2881 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983101.1 3028015 D 365044 CDS YP_983102.1 121605773 4686683 complement(3028690..3030081) 1 NC_008781.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 3030081 fumC 4686683 fumC Polaromonas naphthalenivorans CJ2 fumarate hydratase YP_983102.1 3028690 R 365044 CDS YP_983103.1 121605774 4686690 3030185..3031735 1 NC_008781.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: pol:Bpro_2046 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 3031735 4686690 Pnap_2883 Polaromonas naphthalenivorans CJ2 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha YP_983103.1 3030185 D 365044 CDS YP_983104.1 121605775 4686624 3031762..3032580 1 NC_008781.1 KEGG: pol:Bpro_2045 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase 3032580 4686624 Pnap_2884 Polaromonas naphthalenivorans CJ2 glutamate racemase YP_983104.1 3031762 D 365044 CDS YP_983105.1 121605776 4686570 complement(3032674..3034161) 1 NC_008781.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2037 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 3034161 4686570 Pnap_2885 Polaromonas naphthalenivorans CJ2 RND efflux system outer membrane lipoprotein YP_983105.1 3032674 R 365044 CDS YP_983106.1 121605777 4686561 complement(3034154..3037327) 1 NC_008781.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2036 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family protein 3037327 4686561 Pnap_2886 Polaromonas naphthalenivorans CJ2 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_983106.1 3034154 R 365044 CDS YP_983107.1 121605778 4686144 complement(3037340..3038632) 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2035 secretion protein HlyD; RND family efflux transporter MFP subunit 3038632 4686144 Pnap_2887 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_983107.1 3037340 R 365044 CDS YP_983108.1 121605779 4686493 3038786..3039481 1 NC_008781.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; KEGG: pol:Bpro_2034 transcriptional regulator, TetR family; TetR family transcriptional regulator 3039481 4686493 Pnap_2888 Polaromonas naphthalenivorans CJ2 TetR family transcriptional regulator YP_983108.1 3038786 D 365044 CDS YP_983109.1 121605780 4690161 complement(3039653..3040921) 1 NC_008781.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 3040921 4690161 Pnap_2889 Polaromonas naphthalenivorans CJ2 aspartate kinase YP_983109.1 3039653 R 365044 CDS YP_983110.1 121605781 4686114 complement(3041066..3042052) 1 NC_008781.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: pol:Bpro_2861 tRNA(Ile)-lysidine synthetase-like; tRNA(Ile)-lysidine synthetase 3042052 4686114 Pnap_2890 Polaromonas naphthalenivorans CJ2 tRNA(Ile)-lysidine synthetase YP_983110.1 3041066 R 365044 CDS YP_983111.1 121605782 4687483 complement(3042078..3043058) 1 NC_008781.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit; KEGG: pol:Bpro_2863 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 3043058 4687483 Pnap_2891 Polaromonas naphthalenivorans CJ2 acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_983111.1 3042078 R 365044 CDS YP_983112.1 121605783 4686409 complement(3043121..3043861) 1 NC_008781.1 PFAM: HhH-GPD family protein; KEGG: pol:Bpro_2864 HhH-GPD; HhH-GPD family protein 3043861 4686409 Pnap_2892 Polaromonas naphthalenivorans CJ2 HhH-GPD family protein YP_983112.1 3043121 R 365044 CDS YP_983113.1 121605784 4686267 complement(3043914..3045305) 1 NC_008781.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 3045305 cysS 4686267 cysS Polaromonas naphthalenivorans CJ2 cysteinyl-tRNA synthetase YP_983113.1 3043914 R 365044 CDS YP_983114.1 121605785 4686315 3045614..3046180 1 NC_008781.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_2866 tetratricopeptide TPR_2; hypothetical protein 3046180 4686315 Pnap_2894 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983114.1 3045614 D 365044 CDS YP_983115.1 121605786 4686100 3046215..3046823 1 NC_008781.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pol:Bpro_2867 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3046823 4686100 Pnap_2895 Polaromonas naphthalenivorans CJ2 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_983115.1 3046215 D 365044 CDS YP_983116.1 121605787 4686856 3046842..3047351 1 NC_008781.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pol:Bpro_2868 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3047351 4686856 Pnap_2896 Polaromonas naphthalenivorans CJ2 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_983116.1 3046842 D 365044 CDS YP_983117.1 121605788 4689961 3047386..3048186 1 NC_008781.1 PFAM: metallophosphoesterase; KEGG: pol:Bpro_2869 metallophosphoesterase; metallophosphoesterase 3048186 4689961 Pnap_2897 Polaromonas naphthalenivorans CJ2 metallophosphoesterase YP_983117.1 3047386 D 365044 CDS YP_983118.1 121605789 4689978 3048197..3048967 1 NC_008781.1 PFAM: protein of unknown function DUF980; KEGG: pol:Bpro_2870 protein of unknown function DUF980; hypothetical protein 3048967 4689978 Pnap_2898 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983118.1 3048197 D 365044 CDS YP_983119.1 121605790 4686274 complement(3049003..3050004) 1 NC_008781.1 KEGG: eba:p1B295 N6 adenine-specific DNA methyltransferase protein, N12 class; N6 adenine-specific DNA methyltransferase protein, N12 class 3050004 4686274 Pnap_2899 Polaromonas naphthalenivorans CJ2 N6 adenine-specific DNA methyltransferase protein, N12 class YP_983119.1 3049003 R 365044 CDS YP_983120.1 121605791 4689997 3050231..3050704 1 NC_008781.1 KEGG: mma:MM3343 transposase; transposase 3050704 4689997 Pnap_2900 Polaromonas naphthalenivorans CJ2 transposase YP_983120.1 3050231 D 365044 CDS YP_983121.1 121605792 4689315 3050701..3051363 1 NC_008781.1 KEGG: mma:MM3344 transposase; transposase 3051363 4689315 Pnap_2901 Polaromonas naphthalenivorans CJ2 transposase YP_983121.1 3050701 D 365044 CDS YP_983122.1 121605793 4688024 complement(3051342..3053207) 1 NC_008781.1 KEGG: eba:p1B295 N6 adenine-specific DNA methyltransferase protein, N12 class; N6 adenine-specific DNA methyltransferase protein, N12 class 3053207 4688024 Pnap_2902 Polaromonas naphthalenivorans CJ2 N6 adenine-specific DNA methyltransferase protein, N12 class YP_983122.1 3051342 R 365044 CDS YP_983123.1 121605794 4687963 complement(3053347..3056193) 1 NC_008781.1 KEGG: pol:Bpro_2871 hypothetical protein; hypothetical protein 3056193 4687963 Pnap_2903 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983123.1 3053347 R 365044 CDS YP_983124.1 121605795 4687693 complement(3056407..3060303) 1 NC_008781.1 PFAM: protein of unknown function DUF748; KEGG: pol:Bpro_2872 protein of unknown function DUF748; hypothetical protein 3060303 4687693 Pnap_2904 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983124.1 3056407 R 365044 CDS YP_983125.1 121605796 4688465 3060384..3060716 1 NC_008781.1 hypothetical protein 3060716 4688465 Pnap_2905 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983125.1 3060384 D 365044 CDS YP_983126.1 121605797 4686790 3061067..3061987 1 NC_008781.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_2873 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 3061987 4686790 Pnap_2906 Polaromonas naphthalenivorans CJ2 lytic transglycosylase catalytic subunit YP_983126.1 3061067 D 365044 CDS YP_983127.1 121605798 4687176 3062218..3063462 1 NC_008781.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3063462 glyA 4687176 glyA Polaromonas naphthalenivorans CJ2 serine hydroxymethyltransferase YP_983127.1 3062218 D 365044 CDS YP_983128.1 121605799 4690000 3063563..3064012 1 NC_008781.1 PFAM: ATP-cone domain protein; KEGG: pol:Bpro_2875 protein of unknown function DUF193; transcriptional regulator NrdR 3064012 nrdR 4690000 nrdR Polaromonas naphthalenivorans CJ2 transcriptional regulator NrdR YP_983128.1 3063563 D 365044 CDS YP_983129.1 121605800 4689351 3064116..3064682 1 NC_008781.1 KEGG: pol:Bpro_2877 methylation; pilus assembly protein 3064682 4689351 Pnap_2909 Polaromonas naphthalenivorans CJ2 pilus assembly protein YP_983129.1 3064116 D 365044 CDS YP_983130.1 121605801 4690097 3064673..3065251 1 NC_008781.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV; type IV pilus modification protein PilV 3065251 4690097 Pnap_2910 Polaromonas naphthalenivorans CJ2 type IV pilus modification protein PilV YP_983130.1 3064673 D 365044 CDS YP_983131.1 121605802 4690102 3065238..3066065 1 NC_008781.1 KEGG: bps:BPSL2754 putative membrane protein; Tfp pilus assembly protein PilW-like protein 3066065 4690102 Pnap_2911 Polaromonas naphthalenivorans CJ2 Tfp pilus assembly protein PilW-like protein YP_983131.1 3065238 D 365044 CDS YP_983132.1 121605803 4689425 3066072..3066869 1 NC_008781.1 Tfp pilus assembly protein PilX-like protein 3066869 4689425 Pnap_2912 Polaromonas naphthalenivorans CJ2 Tfp pilus assembly protein PilX-like protein YP_983132.1 3066072 D 365044 CDS YP_983133.1 121605804 4688635 3066903..3070349 1 NC_008781.1 KEGG: pae:PA4554 type 4 fimbrial biogenesis protein PilY1; type 4 fimbrial biogenesis protein PilY1 3070349 4688635 Pnap_2913 Polaromonas naphthalenivorans CJ2 type 4 fimbrial biogenesis protein PilY1 YP_983133.1 3066903 D 365044 CDS YP_983134.1 121605805 4686463 3070371..3070805 1 NC_008781.1 KEGG: xcv:XCV2814 type IV pilin PilE; type IV pilin PilE 3070805 4686463 Pnap_2914 Polaromonas naphthalenivorans CJ2 type IV pilin PilE YP_983134.1 3070371 D 365044 CDS YP_983135.1 121605806 4688738 3070810..3071922 1 NC_008781.1 KEGG: pol:Bpro_2883 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 3071922 4688738 Pnap_2915 Polaromonas naphthalenivorans CJ2 riboflavin biosynthesis protein RibD YP_983135.1 3070810 D 365044 CDS YP_983136.1 121605807 4688861 3072033..3072692 1 NC_008781.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3072692 4688861 Pnap_2916 Polaromonas naphthalenivorans CJ2 riboflavin synthase subunit alpha YP_983136.1 3072033 D 365044 CDS YP_983137.1 121605808 4690001 3072689..3073795 1 NC_008781.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: pol:Bpro_2885 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3073795 4690001 Pnap_2917 Polaromonas naphthalenivorans CJ2 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_983137.1 3072689 D 365044 CDS YP_983138.1 121605809 4689375 3073820..3074284 1 NC_008781.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 3074284 ribH 4689375 ribH Polaromonas naphthalenivorans CJ2 6,7-dimethyl-8-ribityllumazine synthase YP_983138.1 3073820 D 365044 CDS YP_983139.1 121605810 4688205 3074319..3074840 1 NC_008781.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 3074840 nusB 4688205 nusB Polaromonas naphthalenivorans CJ2 transcription antitermination protein NusB YP_983139.1 3074319 D 365044 CDS YP_983140.1 121605811 4689511 3074869..3076065 1 NC_008781.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2888 aminotransferase, class I and II; aminotransferase 3076065 4689511 Pnap_2920 Polaromonas naphthalenivorans CJ2 aminotransferase YP_983140.1 3074869 D 365044 CDS YP_983141.1 121605812 4688936 3076196..3076651 1 NC_008781.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2889 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 3076651 4688936 Pnap_2921 Polaromonas naphthalenivorans CJ2 thioesterase superfamily protein YP_983141.1 3076196 D 365044 CDS YP_983142.1 121605813 4686488 3076667..3077359 1 NC_008781.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2890 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3077359 4686488 Pnap_2922 Polaromonas naphthalenivorans CJ2 MotA/TolQ/ExbB proton channel YP_983142.1 3076667 D 365044 CDS YP_983143.1 121605814 4688264 3077378..3077812 1 NC_008781.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2891 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 3077812 4688264 Pnap_2923 Polaromonas naphthalenivorans CJ2 biopolymer transport protein ExbD/TolR YP_983143.1 3077378 D 365044 CDS YP_983144.1 121605815 4690044 3077846..3079111 1 NC_008781.1 TIGRFAM: TonB family protein; PFAM: TolA family protein; KEGG: pol:Bpro_2892 TonB-like; TonB family protein 3079111 4690044 Pnap_2924 Polaromonas naphthalenivorans CJ2 TonB family protein YP_983144.1 3077846 D 365044 CDS YP_983145.1 121605816 4689633 complement(3079179..3082700) 1 NC_008781.1 KEGG: pol:Bpro_2893 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 3082700 4689633 Pnap_2925 Polaromonas naphthalenivorans CJ2 DNA polymerase III subunit alpha YP_983145.1 3079179 R 365044 CDS YP_983146.1 121605817 4687657 3082781..3083542 1 NC_008781.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_2894 rhodanese-like; rhodanese superfamily protein 3083542 4687657 Pnap_2926 Polaromonas naphthalenivorans CJ2 rhodanese superfamily protein YP_983146.1 3082781 D 365044 CDS YP_983147.1 121605818 4689000 3083587..3084900 1 NC_008781.1 PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein; hypothetical protein 3084900 4689000 Pnap_2927 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983147.1 3083587 D 365044 CDS YP_983148.1 121605819 4689578 complement(3084902..3085816) 1 NC_008781.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_2897 pirin-like; pirin domain-containing protein 3085816 4689578 Pnap_2928 Polaromonas naphthalenivorans CJ2 pirin domain-containing protein YP_983148.1 3084902 R 365044 CDS YP_983149.1 121605820 4688653 complement(3085874..3086455) 1 NC_008781.1 KEGG: pol:Bpro_2899 putative flavodoxin; putative flavodoxin 3086455 4688653 Pnap_2929 Polaromonas naphthalenivorans CJ2 putative flavodoxin YP_983149.1 3085874 R 365044 CDS YP_983150.1 121605821 4686643 complement(3086452..3086865) 1 NC_008781.1 PFAM: DoxX family protein; KEGG: pol:Bpro_2900 DoxX; DoxX family protein 3086865 4686643 Pnap_2930 Polaromonas naphthalenivorans CJ2 DoxX family protein YP_983150.1 3086452 R 365044 CDS YP_983151.1 121605822 4687470 complement(3086981..3087682) 1 NC_008781.1 PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_2901 pirin-like; pirin domain-containing protein 3087682 4687470 Pnap_2931 Polaromonas naphthalenivorans CJ2 pirin domain-containing protein YP_983151.1 3086981 R 365044 CDS YP_983152.1 121605823 4688127 3087792..3088745 1 NC_008781.1 PFAM: regulatory protein, LysR; helix-turn-helix, Fis-type; LysR, substrate-binding; KEGG: pol:Bpro_2902 transcriptional regulator, LysR family; LysR family transcriptional regulator 3088745 4688127 Pnap_2932 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_983152.1 3087792 D 365044 CDS YP_983153.1 121605824 4689088 3088807..3089958 1 NC_008781.1 KEGG: pol:Bpro_2903 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3089958 4689088 Pnap_2933 Polaromonas naphthalenivorans CJ2 FAD dependent oxidoreductase YP_983153.1 3088807 D 365044 CDS YP_983154.1 121605825 4690190 3089971..3090954 1 NC_008781.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: pol:Bpro_2904 glutamate--tRNA ligase; glutamate--tRNA ligase 3090954 4690190 Pnap_2934 Polaromonas naphthalenivorans CJ2 glutamate--tRNA ligase YP_983154.1 3089971 D 365044 CDS YP_983155.1 121605826 4689690 3090927..3091787 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRB0783 hypothetical protein; hypothetical protein 3091787 4689690 Pnap_2935 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983155.1 3090927 D 365044 CDS YP_983156.1 121605827 4687612 3091819..3092559 1 NC_008781.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3092559 trmB 4687612 trmB Polaromonas naphthalenivorans CJ2 tRNA (guanine-N(7)-)-methyltransferase YP_983156.1 3091819 D 365044 CDS YP_983157.1 121605828 4690058 3092556..3093464 1 NC_008781.1 PFAM: pseudouridine synthase; KEGG: pol:Bpro_2906 pseudouridine synthase; pseudouridine synthase 3093464 4690058 Pnap_2937 Polaromonas naphthalenivorans CJ2 pseudouridine synthase YP_983157.1 3092556 D 365044 CDS YP_983158.1 121605829 4686376 complement(3093570..3094691) 1 NC_008781.1 PFAM: transglutaminase domain protein; KEGG: pol:Bpro_2907 hypothetical protein; transglutaminase domain-containing protein 3094691 4686376 Pnap_2938 Polaromonas naphthalenivorans CJ2 transglutaminase domain-containing protein YP_983158.1 3093570 R 365044 CDS YP_983159.1 121605830 4686205 complement(3094865..3095404) 1 NC_008781.1 PFAM: Redoxin domain protein; KEGG: pol:Bpro_2908 thiol-disulfide isomerase and thioredoxins-like; redoxin domain-containing protein 3095404 4686205 Pnap_2939 Polaromonas naphthalenivorans CJ2 redoxin domain-containing protein YP_983159.1 3094865 R 365044 CDS YP_983160.1 121605831 4686371 complement(3095505..3097034) 1 NC_008781.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_1632 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase 3097034 4686371 Pnap_2940 Polaromonas naphthalenivorans CJ2 3-hydroxybutyryl-CoA dehydrogenase YP_983160.1 3095505 R 365044 CDS YP_983161.1 121605832 4686897 complement(3097031..3097825) 1 NC_008781.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3097825 4686897 Pnap_2941 Polaromonas naphthalenivorans CJ2 enoyl-CoA hydratase/isomerase YP_983161.1 3097031 R 365044 CDS YP_983162.1 121605833 4686607 complement(3097825..3099108) 1 NC_008781.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: pol:Bpro_1630 oxidoreductase FAD/NAD(P)-binding; FadD27 protein 3099108 4686607 Pnap_2942 Polaromonas naphthalenivorans CJ2 FadD27 protein YP_983162.1 3097825 R 365044 CDS YP_983163.1 121605834 4687318 complement(3099265..3100692) 1 NC_008781.1 KEGG: pol:Bpro_1629 benzoyl-CoA oxygenase component B; benzoyl-CoA oxygenase component B 3100692 4687318 Pnap_2943 Polaromonas naphthalenivorans CJ2 benzoyl-CoA oxygenase component B YP_983163.1 3099265 R 365044 CDS YP_983164.1 121605835 4687218 complement(3100797..3102455) 1 NC_008781.1 cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; benzoyl-CoA-dihydrodiol lyase 3102455 4687218 Pnap_2944 Polaromonas naphthalenivorans CJ2 benzoyl-CoA-dihydrodiol lyase YP_983164.1 3100797 R 365044 CDS YP_983165.1 121605836 4687826 complement(3102572..3103546) 1 NC_008781.1 consists of N-terminal helix-turn-helix domain and C-terminal shikimate kinase-like domain which may bind benzoyl-CoA; controls inducible expression of the bzd catabolic operon that is involved in the anaerobic catabolism of benzoate; anaerobic benzoate catabolism transcriptional regulator 3103546 4687826 Pnap_2945 Polaromonas naphthalenivorans CJ2 anaerobic benzoate catabolism transcriptional regulator YP_983165.1 3102572 R 365044 CDS YP_983166.1 121605837 4689509 3103634..3104101 1 NC_008781.1 KEGG: pol:Bpro_1626 hypothetical protein; hypothetical protein 3104101 4689509 Pnap_2946 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983166.1 3103634 D 365044 CDS YP_983167.1 121605838 4689611 3104122..3105693 1 NC_008781.1 PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_1625 aldehyde dehydrogenase; aldehyde dehydrogenase 3105693 4689611 Pnap_2947 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_983167.1 3104122 D 365044 CDS YP_983168.1 121605839 4687994 3105719..3107302 1 NC_008781.1 TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_1624 benzoate-CoA ligase family; benzoate-CoA ligase family 3107302 4687994 Pnap_2948 Polaromonas naphthalenivorans CJ2 benzoate-CoA ligase family YP_983168.1 3105719 D 365044 CDS YP_983169.1 121605840 4686225 3107299..3108114 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0215 alpha/beta hydrolase; alpha/beta hydrolase fold protein 3108114 4686225 Pnap_2949 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold protein YP_983169.1 3107299 D 365044 CDS YP_983170.1 121605841 4688197 3108111..3109274 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0214 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3109274 4688197 Pnap_2950 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_983170.1 3108111 D 365044 CDS YP_983171.1 121605842 4689027 3109415..3110362 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0213 inner-membrane translocator; inner-membrane translocator 3110362 4689027 Pnap_2951 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_983171.1 3109415 D 365044 CDS YP_983172.1 121605843 4686758 3110359..3111360 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_0212 inner-membrane translocator; inner-membrane translocator 3111360 4686758 Pnap_2952 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_983172.1 3110359 D 365044 CDS YP_983173.1 121605844 4686181 3111347..3112123 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0211 ABC transporter related; ABC transporter-like protein 3112123 4686181 Pnap_2953 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983173.1 3111347 D 365044 CDS YP_983174.1 121605845 4686979 3112125..3112844 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0210 ABC transporter related; ABC transporter-like protein 3112844 4686979 Pnap_2954 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983174.1 3112125 D 365044 CDS YP_983175.1 121605846 4690046 complement(3113605..3116034) 1 NC_008781.1 KEGG: pol:Bpro_2032 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 3116034 4690046 Pnap_2955 Polaromonas naphthalenivorans CJ2 ATP-dependent protease La YP_983175.1 3113605 R 365044 CDS YP_983176.1 121605847 4689266 complement(3116153..3117418) 1 NC_008781.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 3117418 clpX 4689266 clpX Polaromonas naphthalenivorans CJ2 ATP-dependent protease ATP-binding subunit ClpX YP_983176.1 3116153 R 365044 CDS YP_983177.1 121605848 4688618 complement(3117555..3118205) 1 NC_008781.1 KEGG: pol:Bpro_2030 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 3118205 4688618 Pnap_2957 Polaromonas naphthalenivorans CJ2 ATP-dependent Clp protease, proteolytic subunit ClpP YP_983177.1 3117555 R 365044 CDS YP_983178.1 121605849 4687966 complement(3118303..3119613) 1 NC_008781.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 3119613 tig 4687966 tig Polaromonas naphthalenivorans CJ2 trigger factor YP_983178.1 3118303 R 365044 CDS YP_983179.1 121605850 4689501 complement(3119932..3123147) 1 NC_008781.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2028 acriflavin resistance protein; acriflavin resistance protein 3123147 4689501 Pnap_2959 Polaromonas naphthalenivorans CJ2 acriflavin resistance protein YP_983179.1 3119932 R 365044 CDS YP_983180.1 121605851 4686485 complement(3123155..3124318) 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_2027 secretion protein HlyD; RND family efflux transporter MFP subunit 3124318 4686485 Pnap_2960 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_983180.1 3123155 R 365044 CDS YP_983181.1 121605852 4688902 3124416..3125309 1 NC_008781.1 PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2018 squalene/phytoene synthase; squalene/phytoene synthase 3125309 4688902 Pnap_2961 Polaromonas naphthalenivorans CJ2 squalene/phytoene synthase YP_983181.1 3124416 D 365044 CDS YP_983182.1 121605853 4687305 complement(3125367..3126737) 1 NC_008781.1 KEGG: neu:NE2521 hypothetical protein; hypothetical protein 3126737 4687305 Pnap_2962 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983182.1 3125367 R 365044 CDS YP_983183.1 121605854 4688270 complement(3126737..3128818) 1 NC_008781.1 KEGG: neu:NE2520 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 3128818 4688270 Pnap_2963 Polaromonas naphthalenivorans CJ2 ATP-dependent DNA helicase RecQ YP_983183.1 3126737 R 365044 CDS YP_983184.1 121605855 4689238 3129092..3129973 1 NC_008781.1 PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2017 squalene/phytoene synthase; squalene/phytoene synthase 3129973 4689238 Pnap_2964 Polaromonas naphthalenivorans CJ2 squalene/phytoene synthase YP_983184.1 3129092 D 365044 CDS YP_983185.1 121605856 4687814 3129978..3131249 1 NC_008781.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: pol:Bpro_2016 amine oxidase; amine oxidase 3131249 4687814 Pnap_2965 Polaromonas naphthalenivorans CJ2 amine oxidase YP_983185.1 3129978 D 365044 CDS YP_983186.1 121605857 4688247 complement(3131483..3132283) 1 NC_008781.1 PFAM: MltA-interacting MipA family protein; KEGG: rso:RSc2284 putative transmembrane protein; MltA-interacting MipA family protein 3132283 4688247 Pnap_2966 Polaromonas naphthalenivorans CJ2 MltA-interacting MipA family protein YP_983186.1 3131483 R 365044 CDS YP_983187.1 121605858 4688296 complement(3132343..3135441) 1 NC_008781.1 PFAM: acriflavin resistance protein; KEGG: rso:RS03086 probable transporter transmembrane protein; acriflavin resistance protein 3135441 4688296 Pnap_2967 Polaromonas naphthalenivorans CJ2 acriflavin resistance protein YP_983187.1 3132343 R 365044 CDS YP_983188.1 121605859 4686980 complement(3135438..3136679) 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RS03087 putative cation-efflux system signal peptide protein; RND family efflux transporter MFP subunit 3136679 4686980 Pnap_2968 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_983188.1 3135438 R 365044 CDS YP_983189.1 121605860 4687487 complement(3136676..3138241) 1 NC_008781.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS05806 putative outer membrane lipoprotein; RND efflux system outer membrane lipoprotein 3138241 4687487 Pnap_2969 Polaromonas naphthalenivorans CJ2 RND efflux system outer membrane lipoprotein YP_983189.1 3136676 R 365044 CDS YP_983190.1 121605861 4690009 3138524..3139216 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS03088 probable two-component response regulator transcription regulator protein; two component transcriptional regulator 3139216 4690009 Pnap_2970 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_983190.1 3138524 D 365044 CDS YP_983191.1 121605862 4690036 3139238..3140326 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rso:RS03089 probable two-component transmembrane sensor kinase transcription regulator protein; integral membrane sensor signal transduction histidine kinase 3140326 4690036 Pnap_2971 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_983191.1 3139238 D 365044 CDS YP_983192.1 121605863 4688647 complement(3140528..3141223) 1 NC_008781.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_2014 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase 3141223 4688647 Pnap_2972 Polaromonas naphthalenivorans CJ2 HAD family hydrolase YP_983192.1 3140528 R 365044 CDS YP_983193.1 121605864 4687235 3141244..3142347 1 NC_008781.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 3142347 hemH 4687235 hemH Polaromonas naphthalenivorans CJ2 ferrochelatase YP_983193.1 3141244 D 365044 CDS YP_983194.1 121605865 4688830 complement(3142370..3143095) 1 NC_008781.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tpa:TP0407 phosphoglycolate phosphatase (gph-1); hydrolase 3143095 4688830 Pnap_2974 Polaromonas naphthalenivorans CJ2 hydrolase YP_983194.1 3142370 R 365044 CDS YP_983195.1 121605866 4689635 3143199..3143789 1 NC_008781.1 KEGG: nmu:Nmul_A2145 hypothetical protein; hypothetical protein 3143789 4689635 Pnap_2975 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983195.1 3143199 D 365044 CDS YP_983196.1 121605867 4688171 complement(3143921..3144397) 1 NC_008781.1 PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_3543 MaoC-like dehydratase; dehydratase 3144397 4688171 Pnap_2976 Polaromonas naphthalenivorans CJ2 dehydratase YP_983196.1 3143921 R 365044 CDS YP_983197.1 121605868 4689108 complement(3144466..3145704) 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3544 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3145704 4689108 Pnap_2977 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_983197.1 3144466 R 365044 CDS YP_983198.1 121605869 4687371 complement(3145697..3146209) 1 NC_008781.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3545 transcriptional regulator, MarR family; MarR family transcriptional regulator 3146209 4687371 Pnap_2978 Polaromonas naphthalenivorans CJ2 MarR family transcriptional regulator YP_983198.1 3145697 R 365044 CDS YP_983199.1 121605870 4686095 3146260..3146808 1 NC_008781.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3546 phenylacetic acid degradation-related protein; hypothetical protein 3146808 4686095 Pnap_2979 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983199.1 3146260 D 365044 CDS YP_983200.1 121605871 4686696 complement(3146840..3147553) 1 NC_008781.1 KEGG: rfr:Rfer_0082 hypothetical protein; hypothetical protein 3147553 4686696 Pnap_2980 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983200.1 3146840 R 365044 CDS YP_983201.1 121605872 4687386 complement(3147566..3149335) 1 NC_008781.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: pol:Bpro_2822 peptidoglycan-binding domain 1; peptidoglycan-binding domain-containing protein 3149335 4687386 Pnap_2981 Polaromonas naphthalenivorans CJ2 peptidoglycan-binding domain-containing protein YP_983201.1 3147566 R 365044 CDS YP_983202.1 121605873 4688341 3149396..3150688 1 NC_008781.1 PFAM: protein of unknown function DUF1504; KEGG: nmu:Nmul_A2290 protein of unknown function DUF1504; hypothetical protein 3150688 4688341 Pnap_2982 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983202.1 3149396 D 365044 CDS YP_983203.1 121605874 4686700 complement(3150704..3151708) 1 NC_008781.1 PFAM: sodium/calcium exchanger membrane region; KEGG: rfr:Rfer_3080 sodium/calcium exchanger membrane protein; sodium/calcium exchanger membrane region 3151708 4686700 Pnap_2983 Polaromonas naphthalenivorans CJ2 sodium/calcium exchanger membrane region YP_983203.1 3150704 R 365044 CDS YP_983204.1 121605875 4687279 3151815..3152225 1 NC_008781.1 KEGG: pol:Bpro_3549 glyoxalase I; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 3152225 4687279 Pnap_2984 Polaromonas naphthalenivorans CJ2 lactoylglutathione lyase YP_983204.1 3151815 D 365044 CDS YP_983205.1 121605876 4687544 complement(3152447..3153109) 1 NC_008781.1 KEGG: pol:Bpro_3550 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 3153109 4687544 Pnap_2985 Polaromonas naphthalenivorans CJ2 2-dehydro-3-deoxyphosphogluconate aldolase YP_983205.1 3152447 R 365044 CDS YP_983206.1 121605877 4687953 complement(3153100..3154941) 1 NC_008781.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 3154941 4687953 Pnap_2986 Polaromonas naphthalenivorans CJ2 phosphogluconate dehydratase YP_983206.1 3153100 R 365044 CDS YP_983207.1 121605878 4686798 complement(3155152..3155691) 1 NC_008781.1 PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_3552 OmpA/MotB; OmpA/MotB domain-containing protein 3155691 4686798 Pnap_2987 Polaromonas naphthalenivorans CJ2 OmpA/MotB domain-containing protein YP_983207.1 3155152 R 365044 CDS YP_983208.1 121605879 4688721 3155733..3156344 1 NC_008781.1 PFAM: ChaC family protein; KEGG: pol:Bpro_3553 ChaC-like protein; ChaC family protein 3156344 4688721 Pnap_2988 Polaromonas naphthalenivorans CJ2 ChaC family protein YP_983208.1 3155733 D 365044 CDS YP_983209.1 121605880 4688886 3156360..3157007 1 NC_008781.1 KEGG: pol:Bpro_3559 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase 3157007 4688886 Pnap_2989 Polaromonas naphthalenivorans CJ2 pyridoxamine 5'-phosphate oxidase YP_983209.1 3156360 D 365044 CDS YP_983210.1 121605881 4689946 complement(3157012..3157515) 1 NC_008781.1 KEGG: pol:Bpro_3560 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3157515 4689946 Pnap_2990 Polaromonas naphthalenivorans CJ2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_983210.1 3157012 R 365044 CDS YP_983211.1 121605882 4689718 complement(3157531..3159153) 1 NC_008781.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: pol:Bpro_3561 poly(A) polymerase; poly(A) polymerase 3159153 4689718 Pnap_2991 Polaromonas naphthalenivorans CJ2 poly(A) polymerase YP_983211.1 3157531 R 365044 CDS YP_983212.1 121605883 4689289 complement(3159276..3159983) 1 NC_008781.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_3562 HAD-superfamily subfamily IB, PSPase-like; HAD family hydrolase 3159983 4689289 Pnap_2992 Polaromonas naphthalenivorans CJ2 HAD family hydrolase YP_983212.1 3159276 R 365044 CDS YP_983213.1 121605884 4689229 complement(3159980..3160687) 1 NC_008781.1 PFAM: Chromosomal replication initiator, DnaA; KEGG: pol:Bpro_3564 chromosomal replication initiator, DnaA; chromosomal replication initiator DnaA 3160687 4689229 Pnap_2993 Polaromonas naphthalenivorans CJ2 chromosomal replication initiator DnaA YP_983213.1 3159980 R 365044 CDS YP_983214.1 121605885 4688637 3160968..3162005 1 NC_008781.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3162005 4688637 Pnap_2994 Polaromonas naphthalenivorans CJ2 phosphoribosylaminoimidazole synthetase YP_983214.1 3160968 D 365044 CDS YP_983215.1 121605886 4688780 3162440..3162856 1 NC_008781.1 hypothetical protein 3162856 4688780 Pnap_2995 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983215.1 3162440 D 365044 CDS YP_983216.1 121605887 4688131 3162881..3163354 1 NC_008781.1 KEGG: mma:MM3343 transposase; transposase 3163354 4688131 Pnap_2996 Polaromonas naphthalenivorans CJ2 transposase YP_983216.1 3162881 D 365044 CDS YP_983217.1 121605888 4687800 3163351..3164013 1 NC_008781.1 KEGG: mma:MM3344 transposase; transposase 3164013 4687800 Pnap_2997 Polaromonas naphthalenivorans CJ2 transposase YP_983217.1 3163351 D 365044 CDS YP_983218.1 121605889 4686149 3164670..3165047 1 NC_008781.1 PFAM: protein of unknown function DUF891; KEGG: xfa:XFa0034 hypothetical protein; hypothetical protein 3165047 4686149 Pnap_2998 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983218.1 3164670 D 365044 CDS YP_983219.1 121605890 4686519 3165028..3165363 1 NC_008781.1 PFAM: helix-turn-helix domain protein; KEGG: nmu:Nmul_D2814 transcriptional regulator, XRE family; XRE family transcriptional regulator 3165363 4686519 Pnap_2999 Polaromonas naphthalenivorans CJ2 XRE family transcriptional regulator YP_983219.1 3165028 D 365044 CDS YP_983220.1 121605891 4687439 3165551..3166744 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3567 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3166744 4687439 Pnap_3000 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_983220.1 3165551 D 365044 CDS YP_983221.1 121605892 4688073 3166898..3167506 1 NC_008781.1 PFAM: isochorismatase hydrolase; KEGG: rfr:Rfer_2520 isochorismatase hydrolase; isochorismatase hydrolase 3167506 4688073 Pnap_3001 Polaromonas naphthalenivorans CJ2 isochorismatase hydrolase YP_983221.1 3166898 D 365044 CDS YP_983222.1 121605893 4689384 3167503..3168513 1 NC_008781.1 PFAM: ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_2523 transcriptional regulator, AraC family; AraC family transcriptional regulator 3168513 4689384 Pnap_3002 Polaromonas naphthalenivorans CJ2 AraC family transcriptional regulator YP_983222.1 3167503 D 365044 CDS YP_983223.1 121605894 4686264 complement(3168561..3169412) 1 NC_008781.1 KEGG: pol:Bpro_3568 hypothetical protein; hypothetical protein 3169412 4686264 Pnap_3003 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983223.1 3168561 R 365044 CDS YP_983224.1 121605895 4688985 complement(3169507..3171072) 1 NC_008781.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: pol:Bpro_3569 integral membrane protein MviN; integral membrane protein MviN 3171072 4688985 Pnap_3004 Polaromonas naphthalenivorans CJ2 integral membrane protein MviN YP_983224.1 3169507 R 365044 CDS YP_983225.1 121605896 4688030 3171334..3173451 1 NC_008781.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: reu:Reut_B4866 TonB-dependent receptor; TonB-dependent receptor 3173451 4688030 Pnap_3005 Polaromonas naphthalenivorans CJ2 TonB-dependent receptor YP_983225.1 3171334 D 365044 CDS YP_983226.1 121605897 4686805 3173509..3174177 1 NC_008781.1 PFAM: Ankyrin; KEGG: reu:Reut_B5420 ankyrin; ankyrin 3174177 4686805 Pnap_3006 Polaromonas naphthalenivorans CJ2 ankyrin YP_983226.1 3173509 D 365044 CDS YP_983227.1 121605898 4689606 3174400..3176121 1 NC_008781.1 PFAM: Pyrrolo-quinoline quinone; KEGG: reu:Reut_B5419 pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 3176121 4689606 Pnap_3007 Polaromonas naphthalenivorans CJ2 Pyrrolo-quinoline quinone YP_983227.1 3174400 D 365044 CDS YP_983228.1 121605899 4686354 3176155..3176745 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: reu:Reut_B5418 cytochrome c, class I; class I cytochrome c 3176745 4686354 Pnap_3008 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_983228.1 3176155 D 365044 CDS YP_983229.1 121605900 4687546 3176867..3177187 1 NC_008781.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3177187 rpsT 4687546 rpsT Polaromonas naphthalenivorans CJ2 30S ribosomal protein S20 YP_983229.1 3176867 D 365044 CDS YP_983230.1 121605901 4686396 complement(3177325..3177645) 1 NC_008781.1 KEGG: pol:Bpro_3571 hypothetical protein; hypothetical protein 3177645 4686396 Pnap_3010 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983230.1 3177325 R 365044 CDS YP_983231.1 121605902 4686345 3177886..3179100 1 NC_008781.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 3179100 4686345 Pnap_3011 Polaromonas naphthalenivorans CJ2 acetylornithine aminotransferase YP_983231.1 3177886 D 365044 CDS YP_983232.1 121605903 4686497 3179110..3180039 1 NC_008781.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 3180039 4686497 Pnap_3012 Polaromonas naphthalenivorans CJ2 ornithine carbamoyltransferase YP_983232.1 3179110 D 365044 CDS YP_983233.1 121605904 4686236 3180309..3181829 1 NC_008781.1 PFAM: aldehyde dehydrogenase; KEGG: eba:ebA2242 aldehyde dehydrogenase; aldehyde dehydrogenase 3181829 4686236 Pnap_3013 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_983233.1 3180309 D 365044 CDS YP_983234.1 121605905 4687116 3181950..3182744 1 NC_008781.1 KEGG: dar:Daro_0143 hypothetical protein; hypothetical protein 3182744 4687116 Pnap_3014 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983234.1 3181950 D 365044 CDS YP_983235.1 121605906 4686928 3182741..3183742 1 NC_008781.1 KEGG: dar:Daro_0142 hypothetical protein; hypothetical protein 3183742 4686928 Pnap_3015 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983235.1 3182741 D 365044 CDS YP_983236.1 121605907 4687198 3183791..3184156 1 NC_008781.1 KEGG: gka:GK3199 hypothetical protein; hypothetical protein 3184156 4687198 Pnap_3016 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983236.1 3183791 D 365044 CDS YP_983237.1 121605908 4687964 complement(3184175..3184927) 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_3587 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3184927 4687964 Pnap_3017 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_983237.1 3184175 R 365044 CDS YP_983238.1 121605909 4687813 3185135..3185806 1 NC_008781.1 PFAM: cyclase family protein; KEGG: bbr:BB3259 hypothetical protein; cyclase family protein 3185806 4687813 Pnap_3018 Polaromonas naphthalenivorans CJ2 cyclase family protein YP_983238.1 3185135 D 365044 CDS YP_983239.1 121605910 4688159 3185827..3187104 1 NC_008781.1 TIGRFAM: kynureninase; PFAM: aminotransferase, class V; KEGG: pol:Bpro_3589 kynureninase; kynureninase 3187104 4688159 Pnap_3019 Polaromonas naphthalenivorans CJ2 kynureninase YP_983239.1 3185827 D 365044 CDS YP_983240.1 121605911 4688573 3187106..3187954 1 NC_008781.1 PFAM: tryptophan 2,3-dioxygenase; KEGG: pol:Bpro_3590 tryptophan 2,3-dioxygenase; tryptophan 2,3-dioxygenase 3187954 4688573 Pnap_3020 Polaromonas naphthalenivorans CJ2 tryptophan 2,3-dioxygenase YP_983240.1 3187106 D 365044 CDS YP_983241.1 121605912 4688347 3188242..3188862 1 NC_008781.1 PFAM: protein of unknown function DUF1449; KEGG: tbd:Tbd_2219 hypothetical protein; hypothetical protein 3188862 4688347 Pnap_3021 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983241.1 3188242 D 365044 CDS YP_983242.1 121605913 4688638 3188888..3190600 1 NC_008781.1 PFAM: band 7 protein; KEGG: stm:STM3199 hypothetical protein; hypothetical protein 3190600 4688638 Pnap_3022 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983242.1 3188888 D 365044 CDS YP_983243.1 121605914 4689363 complement(3190704..3191981) 1 NC_008781.1 PFAM: monooxygenase, FAD-binding; KEGG: pol:Bpro_3591 salicylate 1-monooxygenase; FAD-binding monooxygenase 3191981 4689363 Pnap_3023 Polaromonas naphthalenivorans CJ2 FAD-binding monooxygenase YP_983243.1 3190704 R 365044 CDS YP_983244.1 121605915 4689175 complement(3192052..3195021) 1 NC_008781.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 3195021 4689175 Pnap_3024 Polaromonas naphthalenivorans CJ2 aconitate hydratase YP_983244.1 3192052 R 365044 CDS YP_983245.1 121605916 4689226 3195100..3196515 1 NC_008781.1 PFAM: peptidase U32; KEGG: cvi:CV1955 probable protease; peptidase U32 3196515 4689226 Pnap_3025 Polaromonas naphthalenivorans CJ2 peptidase U32 YP_983245.1 3195100 D 365044 CDS YP_983246.1 121605917 4689582 3196512..3196742 1 NC_008781.1 KEGG: rpc:RPC_4373 hypothetical protein; hypothetical protein 3196742 4689582 Pnap_3026 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983246.1 3196512 D 365044 CDS YP_983247.1 121605918 4690045 complement(3196850..3199465) 1 NC_008781.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 3199465 4690045 Pnap_3027 Polaromonas naphthalenivorans CJ2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_983247.1 3196850 R 365044 CDS YP_983248.1 121605919 4690157 complement(3199540..3200211) 1 NC_008781.1 KEGG: pol:Bpro_3596 hypothetical protein; hypothetical protein 3200211 4690157 Pnap_3028 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983248.1 3199540 R 365044 CDS YP_983249.1 121605920 4690192 complement(3200241..3201230) 1 NC_008781.1 PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase; HpcH/HpaI aldolase 3201230 4690192 Pnap_3029 Polaromonas naphthalenivorans CJ2 HpcH/HpaI aldolase YP_983249.1 3200241 R 365044 CDS YP_983250.1 121605921 4689791 complement(3201325..3202311) 1 NC_008781.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 3202311 4689791 Pnap_3030 Polaromonas naphthalenivorans CJ2 malate dehydrogenase YP_983250.1 3201325 R 365044 CDS YP_983251.1 121605922 4689758 3202526..3203386 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pol:Bpro_3599 transcriptional regulator, GntR family; UbiC transcription regulator-associated domain-containing protein 3203386 4689758 Pnap_3031 Polaromonas naphthalenivorans CJ2 UbiC transcription regulator-associated domain-containing protein YP_983251.1 3202526 D 365044 CDS YP_983252.1 121605923 4689307 3203516..3203962 1 NC_008781.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pol:Bpro_3600 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 3203962 4689307 Pnap_3032 Polaromonas naphthalenivorans CJ2 succinate dehydrogenase, cytochrome b subunit YP_983252.1 3203516 D 365044 CDS YP_983253.1 121605924 4689591 3204039..3204404 1 NC_008781.1 KEGG: pol:Bpro_3601 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 3204404 4689591 Pnap_3033 Polaromonas naphthalenivorans CJ2 succinate dehydrogenase, cytochrome b subunit YP_983253.1 3204039 D 365044 CDS YP_983254.1 121605925 4689527 3204466..3206259 1 NC_008781.1 KEGG: pol:Bpro_3602 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase, flavoprotein subunit 3206259 4689527 Pnap_3034 Polaromonas naphthalenivorans CJ2 succinate dehydrogenase, flavoprotein subunit YP_983254.1 3204466 D 365044 CDS YP_983255.1 121605926 4689361 3206303..3207007 1 NC_008781.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: pol:Bpro_3603 succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 3207007 4689361 Pnap_3035 Polaromonas naphthalenivorans CJ2 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_983255.1 3206303 D 365044 CDS YP_983256.1 121605927 4690012 3207030..3207338 1 NC_008781.1 PFAM: protein of unknown function DUF339; KEGG: pol:Bpro_3604 protein of unknown function DUF339; hypothetical protein 3207338 4690012 Pnap_3036 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983256.1 3207030 D 365044 CDS YP_983257.1 121605928 4689330 3207373..3208683 1 NC_008781.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3208683 gltA 4689330 gltA Polaromonas naphthalenivorans CJ2 type II citrate synthase YP_983257.1 3207373 D 365044 CDS YP_983258.1 121605929 4688959 3208913..3209878 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3607 transcriptional regulator, LysR family; LysR family transcriptional regulator 3209878 4688959 Pnap_3038 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_983258.1 3208913 D 365044 CDS YP_983259.1 121605930 4688815 3209909..3211360 1 NC_008781.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 3211360 4688815 Pnap_3039 Polaromonas naphthalenivorans CJ2 isopropylmalate isomerase large subunit YP_983259.1 3209909 D 365044 CDS YP_983260.1 121605931 4688424 3211375..3212025 1 NC_008781.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 3212025 leuD 4688424 leuD Polaromonas naphthalenivorans CJ2 isopropylmalate isomerase small subunit YP_983260.1 3211375 D 365044 CDS YP_983261.1 121605932 4688483 3212099..3213169 1 NC_008781.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3213169 4688483 Pnap_3041 Polaromonas naphthalenivorans CJ2 3-isopropylmalate dehydrogenase YP_983261.1 3212099 D 365044 CDS YP_983262.1 121605933 4688482 3213429..3214568 1 NC_008781.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3214568 4688482 Pnap_3042 Polaromonas naphthalenivorans CJ2 aspartate-semialdehyde dehydrogenase YP_983262.1 3213429 D 365044 CDS YP_983263.1 121605934 4688280 3214820..3217432 1 NC_008781.1 KEGG: pol:Bpro_3613 putative transmembrane protein; hypothetical protein 3217432 4688280 Pnap_3043 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983263.1 3214820 D 365044 CDS YP_983264.1 121605935 4688232 3217475..3218269 1 NC_008781.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 3218269 truA 4688232 truA Polaromonas naphthalenivorans CJ2 tRNA pseudouridine synthase A YP_983264.1 3217475 D 365044 CDS YP_983265.1 121605936 4687214 3218266..3218991 1 NC_008781.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: pol:Bpro_3615 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase 3218991 4687214 Pnap_3045 Polaromonas naphthalenivorans CJ2 phosphoribosylanthranilate isomerase YP_983265.1 3218266 D 365044 CDS YP_983266.1 121605937 4687617 3218969..3220273 1 NC_008781.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 3220273 4687617 Pnap_3046 Polaromonas naphthalenivorans CJ2 tryptophan synthase subunit beta YP_983266.1 3218969 D 365044 CDS YP_983267.1 121605938 4688339 3220270..3221088 1 NC_008781.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 3221088 trpA 4688339 trpA Polaromonas naphthalenivorans CJ2 tryptophan synthase subunit alpha YP_983267.1 3220270 D 365044 CDS YP_983268.1 121605939 4687934 3221248..3222120 1 NC_008781.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: pol:Bpro_3618 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta 3222120 4687934 Pnap_3048 Polaromonas naphthalenivorans CJ2 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_983268.1 3221248 D 365044 CDS YP_983269.1 121605940 4687215 3222216..3222920 1 NC_008781.1 PFAM: peptidase S16, lon domain protein; KEGG: pol:Bpro_3619 peptidase S16, lon-like; peptidase S16, lon domain-containing protein 3222920 4687215 Pnap_3049 Polaromonas naphthalenivorans CJ2 peptidase S16, lon domain-containing protein YP_983269.1 3222216 D 365044 CDS YP_983270.1 121605941 4687535 3223068..3224633 1 NC_008781.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3224633 lysS 4687535 lysS Polaromonas naphthalenivorans CJ2 lysyl-tRNA synthetase YP_983270.1 3223068 D 365044 CDS YP_983271.1 121605942 4687454 3224962..3225579 1 NC_008781.1 KEGG: hypothetical protein; hypothetical protein 3225579 4687454 Pnap_3051 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983271.1 3224962 D 365044 CDS YP_983272.1 121605943 4686964 complement(3225668..3226852) 1 NC_008781.1 PFAM: Patatin; KEGG: pol:Bpro_3621 patatin; patatin 3226852 4686964 Pnap_3052 Polaromonas naphthalenivorans CJ2 patatin YP_983272.1 3225668 R 365044 CDS YP_983273.1 121605944 4687294 complement(3226937..3228868) 1 NC_008781.1 KEGG: bba:Bd3647 predicted membrane protein; hypothetical protein 3228868 4687294 Pnap_3053 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983273.1 3226937 R 365044 CDS YP_983274.1 121605945 4687261 3228912..3229223 1 NC_008781.1 hypothetical protein 3229223 4687261 Pnap_3054 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983274.1 3228912 D 365044 CDS YP_983275.1 121605946 4686846 3229220..3229729 1 NC_008781.1 PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_3622 protein of unknown function DUF45; hypothetical protein 3229729 4686846 Pnap_3055 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983275.1 3229220 D 365044 CDS YP_983276.1 121605947 4686781 complement(3229752..3230810) 1 NC_008781.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: pol:Bpro_3630 glycoside hydrolase, family 3-like; glycoside hydrolase family protein 3230810 4686781 Pnap_3056 Polaromonas naphthalenivorans CJ2 glycoside hydrolase family protein YP_983276.1 3229752 R 365044 CDS YP_983277.1 121605948 4686695 complement(3230876..3231268) 1 NC_008781.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 3231268 acpS 4686695 acpS Polaromonas naphthalenivorans CJ2 4'-phosphopantetheinyl transferase YP_983277.1 3230876 R 365044 CDS YP_983278.1 121605949 4687055 complement(3231268..3232098) 1 NC_008781.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 3232098 4687055 Pnap_3058 Polaromonas naphthalenivorans CJ2 pyridoxine 5'-phosphate synthase YP_983278.1 3231268 R 365044 CDS YP_983279.1 121605950 4686197 complement(3232123..3232872) 1 NC_008781.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: pol:Bpro_3633 DNA repair protein RecO; DNA repair protein RecO 3232872 4686197 Pnap_3059 Polaromonas naphthalenivorans CJ2 DNA repair protein RecO YP_983279.1 3232123 R 365044 CDS YP_983280.1 121605951 4688924 complement(3232921..3233994) 1 NC_008781.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; Miro domain protein; KEGG: pol:Bpro_3634 GTP-binding protein Era; GTP-binding protein Era 3233994 4688924 Pnap_3060 Polaromonas naphthalenivorans CJ2 GTP-binding protein Era YP_983280.1 3232921 R 365044 CDS YP_983281.1 121605952 4689865 complement(3234050..3234751) 1 NC_008781.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 3234751 rnc 4689865 rnc Polaromonas naphthalenivorans CJ2 ribonuclease III YP_983281.1 3234050 R 365044 CDS YP_983282.1 121605953 4689310 complement(3234752..3235093) 1 NC_008781.1 KEGG: pol:Bpro_3636 putative transmembrane protein; hypothetical protein 3235093 4689310 Pnap_3062 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983282.1 3234752 R 365044 CDS YP_983283.1 121605954 4689092 complement(3235163..3236140) 1 NC_008781.1 KEGG: pol:Bpro_3637 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 3236140 4689092 Pnap_3063 Polaromonas naphthalenivorans CJ2 signal peptidase I YP_983283.1 3235163 R 365044 CDS YP_983284.1 121605955 4687604 complement(3236140..3237951) 1 NC_008781.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3237951 4687604 Pnap_3064 Polaromonas naphthalenivorans CJ2 GTP-binding protein LepA YP_983284.1 3236140 R 365044 CDS YP_983285.1 121605956 4686807 complement(3238292..3239767) 1 NC_008781.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pol:Bpro_3640 peptidase S1C, Do; protease Do 3239767 4686807 Pnap_3065 Polaromonas naphthalenivorans CJ2 protease Do YP_983285.1 3238292 R 365044 CDS YP_983286.1 121605957 4686385 complement(3239890..3240933) 1 NC_008781.1 KEGG: pol:Bpro_3641 putative sigma E regulatory protein, MucB/RseB; putative sigma E regulatory protein, MucB/RseB 3240933 4686385 Pnap_3066 Polaromonas naphthalenivorans CJ2 putative sigma E regulatory protein, MucB/RseB YP_983286.1 3239890 R 365044 CDS YP_983287.1 121605958 4686424 complement(3240935..3241576) 1 NC_008781.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: pol:Bpro_3642 anti sigma-E protein, RseA, Burkholderiaceae specific; anti sigma-E protein RseA 3241576 4686424 Pnap_3067 Polaromonas naphthalenivorans CJ2 anti sigma-E protein RseA YP_983287.1 3240935 R 365044 CDS YP_983288.1 121605959 4686161 complement(3241659..3242294) 1 NC_008781.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 3242294 4686161 Pnap_3068 Polaromonas naphthalenivorans CJ2 RNA polymerase sigma factor RpoE YP_983288.1 3241659 R 365044 CDS YP_983289.1 121605960 4686246 complement(3242291..3242827) 1 NC_008781.1 KEGG: pol:Bpro_3644 hypothetical protein; hypothetical protein 3242827 4686246 Pnap_3069 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983289.1 3242291 R 365044 CDS YP_983290.1 121605961 4687056 complement(3242874..3244118) 1 NC_008781.1 PFAM: beta-ketoacyl synthase; KEGG: pol:Bpro_3645 beta-ketoacyl synthase; beta-ketoacyl synthase 3244118 4687056 Pnap_3070 Polaromonas naphthalenivorans CJ2 beta-ketoacyl synthase YP_983290.1 3242874 R 365044 CDS YP_983291.1 121605962 4687330 complement(3244195..3244434) 1 NC_008781.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 3244434 acpP 4687330 acpP Polaromonas naphthalenivorans CJ2 acyl carrier protein YP_983291.1 3244195 R 365044 CDS YP_983292.1 121605963 4687404 complement(3244600..3245346) 1 NC_008781.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_3647 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 3245346 4687404 Pnap_3072 Polaromonas naphthalenivorans CJ2 3-oxoacyl-(acyl-carrier-protein) reductase YP_983292.1 3244600 R 365044 CDS YP_983293.1 121605964 4687730 complement(3245343..3246293) 1 NC_008781.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: pol:Bpro_3648 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 3246293 4687730 Pnap_3073 Polaromonas naphthalenivorans CJ2 malonyl CoA-acyl carrier protein transacylase YP_983293.1 3245343 R 365044 CDS YP_983294.1 121605965 4687823 complement(3246384..3247028) 1 NC_008781.1 KEGG: abo:ABO_1914 hypothetical protein; hypothetical protein 3247028 4687823 Pnap_3074 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983294.1 3246384 R 365044 CDS YP_983295.1 121605966 4688185 complement(3247006..3248391) 1 NC_008781.1 KEGG: BNR/Asp-box repeat protein; BNR/Asp-box repeat-containing protein 3248391 4688185 Pnap_3075 Polaromonas naphthalenivorans CJ2 BNR/Asp-box repeat-containing protein YP_983295.1 3247006 R 365044 CDS YP_983296.1 121605967 4688543 complement(3248444..3249421) 1 NC_008781.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 3249421 4688543 Pnap_3076 Polaromonas naphthalenivorans CJ2 3-oxoacyl-ACP synthase YP_983296.1 3248444 R 365044 CDS YP_983297.1 121605968 4688805 complement(3249426..3250538) 1 NC_008781.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 3250538 4688805 Pnap_3077 Polaromonas naphthalenivorans CJ2 putative glycerol-3-phosphate acyltransferase PlsX YP_983297.1 3249426 R 365044 CDS YP_983298.1 121605969 4688670 complement(3250623..3250805) 1 NC_008781.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 3250805 rpmF 4688670 rpmF Polaromonas naphthalenivorans CJ2 50S ribosomal protein L32 YP_983298.1 3250623 R 365044 CDS YP_983299.1 121605970 4689386 complement(3251028..3251582) 1 NC_008781.1 PFAM: protein of unknown function DUF177; KEGG: pol:Bpro_3653 protein of unknown function DUF177; hypothetical protein 3251582 4689386 Pnap_3079 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983299.1 3251028 R 365044 CDS YP_983300.1 121605971 4689179 3251608..3252279 1 NC_008781.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pol:Bpro_3654 maf protein; maf protein 3252279 4689179 Pnap_3080 Polaromonas naphthalenivorans CJ2 maf protein YP_983300.1 3251608 D 365044 CDS YP_983301.1 121605972 4689237 3252276..3253040 1 NC_008781.1 KEGG: pol:Bpro_3655 putative transmembrane protein; hypothetical protein 3253040 4689237 Pnap_3081 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983301.1 3252276 D 365044 CDS YP_983302.1 121605973 4689592 complement(3253111..3254193) 1 NC_008781.1 PFAM: peptidase S49; KEGG: pol:Bpro_3656 peptidase S49; peptidase S49 3254193 4689592 Pnap_3082 Polaromonas naphthalenivorans CJ2 peptidase S49 YP_983302.1 3253111 R 365044 CDS YP_983303.1 121605974 4690066 complement(3254215..3254580) 1 NC_008781.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3657 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 3254580 4690066 Pnap_3083 Polaromonas naphthalenivorans CJ2 Rieske (2Fe-2S) domain-containing protein YP_983303.1 3254215 R 365044 CDS YP_983304.1 121605975 4690160 complement(3254596..3255255) 1 NC_008781.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_3658 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 3255255 4690160 Pnap_3084 Polaromonas naphthalenivorans CJ2 HAD family hydrolase YP_983304.1 3254596 R 365044 CDS YP_983305.1 121605976 4690198 complement(3255310..3256506) 1 NC_008781.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_3659 pseudouridine synthase, RluD; RluA family pseudouridine synthase 3256506 4690198 Pnap_3085 Polaromonas naphthalenivorans CJ2 RluA family pseudouridine synthase YP_983305.1 3255310 R 365044 CDS YP_983306.1 121605977 4689936 3257099..3260329 1 NC_008781.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pol:Bpro_3660 ribonuclease, Rne/Rng family; ribonuclease 3260329 4689936 Pnap_3086 Polaromonas naphthalenivorans CJ2 ribonuclease YP_983306.1 3257099 D 365044 CDS YP_983307.1 121605978 4689752 complement(3260572..3261861) 1 NC_008781.1 PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein; HemY domain-containing protein 3261861 4689752 Pnap_3087 Polaromonas naphthalenivorans CJ2 HemY domain-containing protein YP_983307.1 3260572 R 365044 CDS YP_983308.1 121605979 4689706 complement(3261894..3263054) 1 NC_008781.1 PFAM: protein of unknown function DUF513, hemX; KEGG: rfr:Rfer_1717 protein of unknown function DUF513, HemX; hypothetical protein 3263054 4689706 Pnap_3088 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983308.1 3261894 R 365044 CDS YP_983309.1 121605980 4689567 complement(3263051..3263914) 1 NC_008781.1 KEGG: rfr:Rfer_1716 uroporphyrinogen III synthase; uroporphyrinogen III synthase 3263914 4689567 Pnap_3089 Polaromonas naphthalenivorans CJ2 uroporphyrinogen III synthase YP_983309.1 3263051 R 365044 CDS YP_983310.1 121605981 4689032 complement(3263928..3264923) 1 NC_008781.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 3264923 hemC 4689032 hemC Polaromonas naphthalenivorans CJ2 porphobilinogen deaminase YP_983310.1 3263928 R 365044 CDS YP_983311.1 121605982 4689093 3264965..3267913 1 NC_008781.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 3267913 4689093 Pnap_3091 Polaromonas naphthalenivorans CJ2 phosphoenolpyruvate carboxylase YP_983311.1 3264965 D 365044 CDS YP_983312.1 121605983 4690018 3268035..3268295 1 NC_008781.1 KEGG: pol:Bpro_3666 hypothetical protein; hypothetical protein 3268295 4690018 Pnap_3092 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983312.1 3268035 D 365044 CDS YP_983313.1 121605984 4689335 3268301..3276496 1 NC_008781.1 PFAM: putative carbohydrate binding; glycosyltransferase 36; KEGG: pol:Bpro_3667 cyclic beta 1-2 glucan synthetase; glycosyltransferase 3276496 4689335 Pnap_3093 Polaromonas naphthalenivorans CJ2 glycosyltransferase YP_983313.1 3268301 D 365044 CDS YP_983314.1 121605985 4688977 3276710..3278569 1 NC_008781.1 KEGG: reu:Reut_B4946 hypothetical protein; hypothetical protein 3278569 4688977 Pnap_3094 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983314.1 3276710 D 365044 CDS YP_983315.1 121605986 4688809 complement(3278708..3279889) 1 NC_008781.1 PFAM: protein of unknown function UPF0118; KEGG: pol:Bpro_3669 protein of unknown function UPF0118; hypothetical protein 3279889 4688809 Pnap_3095 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983315.1 3278708 R 365044 CDS YP_983316.1 121605987 4688415 complement(3280035..3280778) 1 NC_008781.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: pol:Bpro_3670 transcriptional regulator, LytR/AlgR family; response regulator receiver protein 3280778 4688415 Pnap_3096 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_983316.1 3280035 R 365044 CDS YP_983317.1 121605988 4688515 complement(3280775..3281893) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: pol:Bpro_3671 histidine kinase internal region; histidine kinase 3281893 4688515 Pnap_3097 Polaromonas naphthalenivorans CJ2 histidine kinase YP_983317.1 3280775 R 365044 CDS YP_983318.1 121605989 4688704 3282049..3283458 1 NC_008781.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 3283458 4688704 Pnap_3098 Polaromonas naphthalenivorans CJ2 argininosuccinate lyase YP_983318.1 3282049 D 365044 CDS YP_983319.1 121605990 4688307 complement(3283530..3283811) 1 NC_008781.1 KEGG: bbr:BB2140 hypothetical protein; hypothetical protein 3283811 4688307 Pnap_3099 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983319.1 3283530 R 365044 CDS YP_983320.1 121605991 4688263 complement(3283786..3284064) 1 NC_008781.1 PFAM: protein of unknown function DUF497; KEGG: yps:YPTB1901 hypothetical protein; hypothetical protein 3284064 4688263 Pnap_3100 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983320.1 3283786 R 365044 CDS YP_983321.1 121605992 4688142 3284094..3284378 1 NC_008781.1 hypothetical protein 3284378 4688142 Pnap_3101 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983321.1 3284094 D 365044 CDS YP_983322.1 121605993 4688008 3284543..3285088 1 NC_008781.1 TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin; phasin family protein 3285088 4688008 Pnap_3102 Polaromonas naphthalenivorans CJ2 phasin family protein YP_983322.1 3284543 D 365044 CDS YP_983323.1 121605994 4687705 3285215..3286867 1 NC_008781.1 KEGG: pol:Bpro_2832 hypothetical protein; hypothetical protein 3286867 4687705 Pnap_3103 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983323.1 3285215 D 365044 CDS YP_983324.1 121605995 4688335 3286937..3288106 1 NC_008781.1 SMART: AAA ATPase; KEGG: pol:Bpro_0407 hypothetical protein; ATPase AAA 3288106 4688335 Pnap_3104 Polaromonas naphthalenivorans CJ2 ATPase AAA YP_983324.1 3286937 D 365044 CDS YP_983325.1 121605996 4687638 3288249..3288908 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_3674 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3288908 4687638 Pnap_3105 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_983325.1 3288249 D 365044 CDS YP_983326.1 121605997 4687630 3288905..3290257 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_3675 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3290257 4687630 Pnap_3106 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_983326.1 3288905 D 365044 CDS YP_983327.1 121605998 4687541 3290336..3291850 1 NC_008781.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pol:Bpro_3676 peptidase S1C, Do; protease Do 3291850 4687541 Pnap_3107 Polaromonas naphthalenivorans CJ2 protease Do YP_983327.1 3290336 D 365044 CDS YP_983328.1 121605999 4687236 3292192..3293274 1 NC_008781.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pae:PA4797 probable transposase; transposase IS116/IS110/IS902 family protein 3293274 4687236 Pnap_3108 Polaromonas naphthalenivorans CJ2 transposase IS116/IS110/IS902 family protein YP_983328.1 3292192 D 365044 CDS YP_983329.1 121606000 4686901 complement(3294034..3294636) 1 NC_008781.1 hypothetical protein 3294636 4686901 Pnap_3109 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983329.1 3294034 R 365044 CDS YP_983330.1 121606001 4687041 3294896..3300895 1 NC_008781.1 PFAM: alpha-2-macroglobulin domain protein; KEGG: reu:Reut_A3385 alpha-2-macroglobulin, N-terminal; alpha-2-macroglobulin domain-containing protein 3300895 4687041 Pnap_3110 Polaromonas naphthalenivorans CJ2 alpha-2-macroglobulin domain-containing protein YP_983330.1 3294896 D 365044 CDS YP_983331.1 121606002 4687263 3301453..3302793 1 NC_008781.1 KEGG: ava:Ava_4845 parallel beta-helix repeat; hypothetical protein 3302793 4687263 Pnap_3111 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983331.1 3301453 D 365044 CDS YP_983332.1 121606003 4686912 complement(3302934..3303620) 1 NC_008781.1 hypothetical protein 3303620 4686912 Pnap_3112 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983332.1 3302934 R 365044 CDS YP_983333.1 121606004 4686806 complement(3303799..3304680) 1 NC_008781.1 KEGG: sgl:SG2354 hypothetical protein; hypothetical protein 3304680 4686806 Pnap_3113 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983333.1 3303799 R 365044 CDS YP_983334.1 121606005 4689489 complement(3305181..3306287) 1 NC_008781.1 KEGG: aba:Acid345_4387 hypothetical protein; hypothetical protein 3306287 4689489 Pnap_3115 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983334.1 3305181 R 365044 CDS YP_983335.1 121606006 4687136 complement(3306301..3306969) 1 NC_008781.1 PFAM: sugar transferase; KEGG: eba:ebA5903 probable sugar transferase, WBGY; sugar transferase 3306969 4687136 Pnap_3116 Polaromonas naphthalenivorans CJ2 sugar transferase YP_983335.1 3306301 R 365044 CDS YP_983336.1 121606007 4687133 complement(3306972..3308171) 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: eba:ebA5901 predicted nucleoside-diphosphate sugar epimerase; polysaccharide biosynthesis protein CapD 3308171 4687133 Pnap_3117 Polaromonas naphthalenivorans CJ2 polysaccharide biosynthesis protein CapD YP_983336.1 3306972 R 365044 CDS YP_983337.1 121606008 4687127 complement(3308168..3309304) 1 NC_008781.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sat:SYN_01128 nucleotide-sugar aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 3309304 4687127 Pnap_3118 Polaromonas naphthalenivorans CJ2 DegT/DnrJ/EryC1/StrS aminotransferase YP_983337.1 3308168 R 365044 CDS YP_983338.1 121606009 4687138 complement(3309376..3310614) 1 NC_008781.1 PFAM: glycosyl transferase, group 1; KEGG: cvi:CV4119 probable glycosyltransferase; group 1 glycosyl transferase 3310614 4687138 Pnap_3119 Polaromonas naphthalenivorans CJ2 group 1 glycosyl transferase YP_983338.1 3309376 R 365044 CDS YP_983339.1 121606010 4688812 complement(3310835..3311953) 1 NC_008781.1 PFAM: glycosyl transferase, group 1; KEGG: pae:PA3149 probable glycosyltransferase WbpH; group 1 glycosyl transferase 3311953 4688812 Pnap_3120 Polaromonas naphthalenivorans CJ2 group 1 glycosyl transferase YP_983339.1 3310835 R 365044 CDS YP_983340.1 121606011 4687121 complement(3312222..3313508) 1 NC_008781.1 KEGG: pae:PA3154 B-band O-antigen polymerase; hypothetical protein 3313508 4687121 Pnap_3121 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983340.1 3312222 R 365044 CDS YP_983341.1 121606012 4687156 complement(3313711..3314853) 1 NC_008781.1 KEGG: pae:PA3150 LPS biosynthesis protein WbpG; LPS biosynthesis protein WbpG 3314853 4687156 Pnap_3122 Polaromonas naphthalenivorans CJ2 LPS biosynthesis protein WbpG YP_983341.1 3313711 R 365044 CDS YP_983342.1 121606013 4686105 complement(3314854..3315615) 1 NC_008781.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3315615 4686105 Pnap_3123 Polaromonas naphthalenivorans CJ2 imidazole glycerol phosphate synthase subunit HisF YP_983342.1 3314854 R 365044 CDS YP_983343.1 121606014 4687153 complement(3315617..3316225) 1 NC_008781.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: mmp:MMP1082 similar to bacterial imidazoleglycerol-phosphate synthase, amidotransferase subunit; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3316225 4687153 Pnap_3124 Polaromonas naphthalenivorans CJ2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_983343.1 3315617 R 365044 CDS YP_983344.1 121606015 4687152 complement(3316222..3317481) 1 NC_008781.1 PFAM: polysaccharide biosynthesis protein; KEGG: pae:PA3153 O-antigen translocase; polysaccharide biosynthesis protein 3317481 4687152 Pnap_3125 Polaromonas naphthalenivorans CJ2 polysaccharide biosynthesis protein YP_983344.1 3316222 R 365044 CDS YP_983345.1 121606016 4690159 complement(3317478..3318584) 1 NC_008781.1 PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pae:PA3155 probable aminotransferase WbpE; DegT/DnrJ/EryC1/StrS aminotransferase 3318584 4690159 Pnap_3126 Polaromonas naphthalenivorans CJ2 DegT/DnrJ/EryC1/StrS aminotransferase YP_983345.1 3317478 R 365044 CDS YP_983346.1 121606017 4687147 3319086..3319460 1 NC_008781.1 hypothetical protein 3319460 4687147 Pnap_3127 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983346.1 3319086 D 365044 CDS YP_983347.1 121606018 4687150 complement(3319500..3320084) 1 NC_008781.1 KEGG: pae:PA3156 probable acetyltransferase WbpD; putative acetyltransferase WbpD 3320084 4687150 Pnap_3128 Polaromonas naphthalenivorans CJ2 putative acetyltransferase WbpD YP_983347.1 3319500 R 365044 CDS YP_983348.1 121606019 4687151 complement(3320081..3321028) 1 NC_008781.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pae:PA3158 probable oxidoreductase WpbB; oxidoreductase domain-containing protein 3321028 4687151 Pnap_3129 Polaromonas naphthalenivorans CJ2 oxidoreductase domain-containing protein YP_983348.1 3320081 R 365044 CDS YP_983349.1 121606020 4687143 complement(3321046..3322347) 1 NC_008781.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: msu:MS1501 WecC protein; UDP-glucose/GDP-mannose dehydrogenase 3322347 4687143 Pnap_3130 Polaromonas naphthalenivorans CJ2 UDP-glucose/GDP-mannose dehydrogenase YP_983349.1 3321046 R 365044 CDS YP_983350.1 121606021 4686242 complement(3322406..3323509) 1 NC_008781.1 PFAM: glycosyl transferase, family 4; KEGG: eba:ebA6781 putative glycosyl transferase, family 4; glycosyl transferase family protein 3323509 4686242 Pnap_3131 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_983350.1 3322406 R 365044 CDS YP_983351.1 121606022 4687286 complement(3323588..3325831) 1 NC_008781.1 TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: rso:RSp1018 eps I polysaccharide export transmembrane protein; exopolysaccharide transport family protein 3325831 4687286 Pnap_3132 Polaromonas naphthalenivorans CJ2 exopolysaccharide transport family protein YP_983351.1 3323588 R 365044 CDS YP_983352.1 121606023 4687135 complement(3325841..3327094) 1 NC_008781.1 PFAM: polysaccharide export protein; KEGG: bcn:Bcen_4169 polysaccharide export protein; polysaccharide export protein 3327094 4687135 Pnap_3133 Polaromonas naphthalenivorans CJ2 polysaccharide export protein YP_983352.1 3325841 R 365044 CDS YP_983353.1 121606024 4687134 complement(3327333..3327881) 1 NC_008781.1 PFAM: transcription antitermination protein NusG; KEGG: cbu:CBU_0826 transcriptional antitermination protein, putative; NusG antitermination factor 3327881 4687134 Pnap_3134 Polaromonas naphthalenivorans CJ2 NusG antitermination factor YP_983353.1 3327333 R 365044 CDS YP_983354.1 121606025 4687131 3328325..3329098 1 NC_008781.1 putative methyl-accepting chemotaxis sensory transducer 3329098 4687131 Pnap_3135 Polaromonas naphthalenivorans CJ2 putative methyl-accepting chemotaxis sensory transducer YP_983354.1 3328325 D 365044 CDS YP_983355.1 121606026 4687129 3329103..3329639 1 NC_008781.1 KEGG: nha:Nham_3622 OmpA/MotB; hypothetical protein 3329639 4687129 Pnap_3136 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983355.1 3329103 D 365044 CDS YP_983356.1 121606027 4687145 3329672..3331246 1 NC_008781.1 PFAM: Peptidoglycan-binding domain 1 protein; extracellular solute-binding protein, family 1; KEGG: sde:Sde_1367 transcription factor jumonji, JmjC; extracellular solute-binding protein 3331246 4687145 Pnap_3137 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_983356.1 3329672 D 365044 CDS YP_983357.1 121606028 4687130 3331248..3332120 1 NC_008781.1 hypothetical protein 3332120 4687130 Pnap_3138 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983357.1 3331248 D 365044 CDS YP_983358.1 121606029 4687128 3332176..3332886 1 NC_008781.1 PFAM: PspA/IM30 family protein; KEGG: ava:Ava_0161 phage shock protein A, PspA; phage shock protein A, PspA 3332886 4687128 Pnap_3139 Polaromonas naphthalenivorans CJ2 phage shock protein A, PspA YP_983358.1 3332176 D 365044 CDS YP_983359.1 121606030 4687291 3332905..3334758 1 NC_008781.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_5695 ATPase, AAA family; ATPase central domain-containing protein 3334758 4687291 Pnap_3140 Polaromonas naphthalenivorans CJ2 ATPase central domain-containing protein YP_983359.1 3332905 D 365044 CDS YP_983360.1 121606031 4687126 3334793..3335251 1 NC_008781.1 hypothetical protein 3335251 4687126 Pnap_3141 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983360.1 3334793 D 365044 CDS YP_983361.1 121606032 4687123 3335287..3337515 1 NC_008781.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; Penicillin-binding domain protein; KEGG: rme:Rmet_3529 penicillin-binding protein 1C; penicillin-binding protein 1C 3337515 4687123 Pnap_3142 Polaromonas naphthalenivorans CJ2 penicillin-binding protein 1C YP_983361.1 3335287 D 365044 CDS YP_983362.1 121606033 4687139 complement(3337543..3338028) 1 NC_008781.1 PFAM: regulatory protein, MarR; KEGG: bja:bll0108 transcriptional regulatory protein; MarR family transcriptional regulator 3338028 4687139 Pnap_3143 Polaromonas naphthalenivorans CJ2 MarR family transcriptional regulator YP_983362.1 3337543 R 365044 CDS YP_983363.1 121606034 4686632 3338173..3339375 1 NC_008781.1 catalyzes the formation of catechol from salicylate; salicylate hydroxylase 3339375 4686632 Pnap_3144 Polaromonas naphthalenivorans CJ2 salicylate hydroxylase YP_983363.1 3338173 D 365044 CDS YP_983364.1 121606035 4686434 3339416..3340471 1 NC_008781.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: eba:ebA1373 gentisate 1,2-dioxygenase; cupin 3340471 4686434 Pnap_3145 Polaromonas naphthalenivorans CJ2 cupin YP_983364.1 3339416 D 365044 CDS YP_983365.1 121606036 4686229 3340503..3341210 1 NC_008781.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA1377 fumarylpyruvate hydrolase; fumarylacetoacetate (FAA) hydrolase 3341210 4686229 Pnap_3146 Polaromonas naphthalenivorans CJ2 fumarylacetoacetate (FAA) hydrolase YP_983365.1 3340503 D 365044 CDS YP_983366.1 121606037 4687109 3341221..3341859 1 NC_008781.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: eba:ebA1379 maleylpyruvate isomerase; maleylacetoacetate isomerase 3341859 4687109 Pnap_3147 Polaromonas naphthalenivorans CJ2 maleylacetoacetate isomerase YP_983366.1 3341221 D 365044 CDS YP_983367.1 121606038 4687124 3341965..3342975 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1232 uncharacterized protein UPF0065; hypothetical protein 3342975 4687124 Pnap_3148 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983367.1 3341965 D 365044 CDS YP_983368.1 121606039 4687122 complement(3343039..3344229) 1 NC_008781.1 KEGG: rme:Rmet_1779 hypothetical protein; hypothetical protein 3344229 4687122 Pnap_3149 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983368.1 3343039 R 365044 CDS YP_983369.1 121606040 4687141 3344460..3344774 1 NC_008781.1 hypothetical protein 3344774 4687141 Pnap_3150 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983369.1 3344460 D 365044 CDS YP_983370.1 121606041 4687115 3344977..3346044 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcn:Bcen_3232 transposase, IS605 OrfB; IS605 family transposase OrfB 3346044 4687115 Pnap_3151 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_983370.1 3344977 D 365044 CDS YP_983371.1 121606042 4687117 complement(3346232..3348265) 1 NC_008781.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: eba:ebA4169 bacterial type II secretion system protein E; type II secretion system protein E 3348265 4687117 Pnap_3152 Polaromonas naphthalenivorans CJ2 type II secretion system protein E YP_983371.1 3346232 R 365044 CDS YP_983372.1 121606043 4687118 complement(3348418..3350472) 1 NC_008781.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: eba:ebA4169 bacterial type II secretion system protein E; type II secretion system protein E 3350472 4687118 Pnap_3153 Polaromonas naphthalenivorans CJ2 type II secretion system protein E YP_983372.1 3348418 R 365044 CDS YP_983373.1 121606044 4687146 3350664..3351809 1 NC_008781.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3678 L-lactate dehydrogenase (cytochrome); L-lactate dehydrogenase (cytochrome) 3351809 4687146 Pnap_3154 Polaromonas naphthalenivorans CJ2 L-lactate dehydrogenase (cytochrome) YP_983373.1 3350664 D 365044 CDS YP_983374.1 121606045 4687120 3351857..3352429 1 NC_008781.1 KEGG: cps:CPS_2852 hypothetical protein; hypothetical protein 3352429 4687120 Pnap_3155 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983374.1 3351857 D 365044 CDS YP_983375.1 121606046 4687111 complement(3352551..3353468) 1 NC_008781.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_3695 cytochrome c, class I; class I cytochrome c 3353468 4687111 Pnap_3156 Polaromonas naphthalenivorans CJ2 class I cytochrome c YP_983375.1 3352551 R 365044 CDS YP_983376.1 121606047 4687107 complement(3353651..3354472) 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; KEGG: aci:ACIAD2748 putative peroxidase/hydrolase; alpha/beta hydrolase fold protein 3354472 4687107 Pnap_3157 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold protein YP_983376.1 3353651 R 365044 CDS YP_983377.1 121606048 4687110 complement(3354608..3355420) 1 NC_008781.1 hypothetical protein 3355420 4687110 Pnap_3158 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983377.1 3354608 R 365044 CDS YP_983378.1 121606049 4687300 3355544..3356839 1 NC_008781.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: pol:Bpro_3696 DNA-directed DNA polymerase; DNA-directed DNA polymerase 3356839 4687300 Pnap_3159 Polaromonas naphthalenivorans CJ2 DNA-directed DNA polymerase YP_983378.1 3355544 D 365044 CDS YP_983379.1 121606050 4687072 3357058..3358227 1 NC_008781.1 KEGG: pol:Bpro_0151 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 3358227 4687072 Pnap_3160 Polaromonas naphthalenivorans CJ2 PAS/PAC sensor signal transduction histidine kinase YP_983379.1 3357058 D 365044 CDS YP_983380.1 121606051 4687057 3358351..3359277 1 NC_008781.1 KEGG: xac:XAC2710 hypothetical protein; hypothetical protein 3359277 4687057 Pnap_3161 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983380.1 3358351 D 365044 CDS YP_983381.1 121606052 4687307 3359312..3359755 1 NC_008781.1 PFAM: globin; KEGG: hne:HNE_2581 protozoan/cyanobacterial globin family protein; globin 3359755 4687307 Pnap_3162 Polaromonas naphthalenivorans CJ2 globin YP_983381.1 3359312 D 365044 CDS YP_983382.1 121606053 4687012 3359768..3360424 1 NC_008781.1 KEGG: psp:PSPPH_3940 hypothetical protein; hypothetical protein 3360424 4687012 Pnap_3163 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983382.1 3359768 D 365044 CDS YP_983383.1 121606054 4687014 complement(3360482..3361327) 1 NC_008781.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3361327 queF 4687014 queF Polaromonas naphthalenivorans CJ2 7-cyano-7-deazaguanine reductase YP_983383.1 3360482 R 365044 CDS YP_983384.1 121606055 4686985 complement(3361344..3362252) 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3711 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3362252 4686985 Pnap_3165 Polaromonas naphthalenivorans CJ2 alpha/beta hydrolase fold protein YP_983384.1 3361344 R 365044 CDS YP_983385.1 121606056 4686227 complement(3362329..3363105) 1 NC_008781.1 PFAM: protein of unknown function DUF328; KEGG: pol:Bpro_3713 protein of unknown function DUF328; hypothetical protein 3363105 4686227 Pnap_3166 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983385.1 3362329 R 365044 CDS YP_983386.1 121606057 4686983 complement(3363200..3364087) 1 NC_008781.1 KEGG: pol:Bpro_3277 hypothetical protein; hypothetical protein 3364087 4686983 Pnap_3167 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983386.1 3363200 R 365044 CDS YP_983387.1 121606058 4686558 complement(3364407..3365279) 1 NC_008781.1 KEGG: pol:Bpro_3277 hypothetical protein; hypothetical protein 3365279 4686558 Pnap_3168 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983387.1 3364407 R 365044 CDS YP_983388.1 121606059 4687199 3365468..3368407 1 NC_008781.1 TIGRFAM: valyl-tRNA synthetase; KEGG: pol:Bpro_3721 valyl-tRNA synthetase; valyl-tRNA synthetase 3368407 4687199 Pnap_3169 Polaromonas naphthalenivorans CJ2 valyl-tRNA synthetase YP_983388.1 3365468 D 365044 CDS YP_983389.1 121606060 4687076 complement(3368456..3368689) 1 NC_008781.1 PFAM: SirA family protein; KEGG: pol:Bpro_3724 SirA-like; SirA family protein 3368689 4687076 Pnap_3170 Polaromonas naphthalenivorans CJ2 SirA family protein YP_983389.1 3368456 R 365044 CDS YP_983390.1 121606061 4687190 complement(3368761..3369294) 1 NC_008781.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3725 NUDIX hydrolase; NUDIX hydrolase 3369294 4687190 Pnap_3171 Polaromonas naphthalenivorans CJ2 NUDIX hydrolase YP_983390.1 3368761 R 365044 CDS YP_983391.1 121606062 4686605 complement(3369388..3370290) 1 NC_008781.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 3370290 cysM 4686605 cysM Polaromonas naphthalenivorans CJ2 cysteine synthase B YP_983391.1 3369388 R 365044 CDS YP_983392.1 121606063 4687380 complement(3370434..3371858) 1 NC_008781.1 PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: ecc:c3804 hypothetical protein YdcM; transposase, IS605 OrfB 3371858 4687380 Pnap_3173 Polaromonas naphthalenivorans CJ2 transposase, IS605 OrfB YP_983392.1 3370434 R 365044 CDS YP_983393.1 121606064 4689220 complement(3372081..3372644) 1 NC_008781.1 PFAM: NUDIX hydrolase; KEGG: spt:SPA0759 putative O-antigen biosynthesis protein; NUDIX hydrolase 3372644 4689220 Pnap_3174 Polaromonas naphthalenivorans CJ2 NUDIX hydrolase YP_983393.1 3372081 R 365044 CDS YP_983394.1 121606065 4687408 complement(3372644..3373549) 1 NC_008781.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: rso:RSc2237 probable UTP--glucose-1-phosphate uridylyltransferase protein; UTP-glucose-1-phosphate uridylyltransferase GalU 3373549 4687408 Pnap_3175 Polaromonas naphthalenivorans CJ2 UTP-glucose-1-phosphate uridylyltransferase GalU YP_983394.1 3372644 R 365044 CDS YP_983395.1 121606066 4687197 complement(3373776..3375146) 1 NC_008781.1 PFAM: sugar transferase; KEGG: eba:ebA1531 colanic biosynthesis UDP-glucose lipid carrier transferase; sugar transferase 3375146 4687197 Pnap_3176 Polaromonas naphthalenivorans CJ2 sugar transferase YP_983395.1 3373776 R 365044 CDS YP_983396.1 121606067 4687202 complement(3375128..3375493) 1 NC_008781.1 hypothetical protein 3375493 4687202 Pnap_3177 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983396.1 3375128 R 365044 CDS YP_983397.1 121606068 4687340 complement(3375518..3376765) 1 NC_008781.1 PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_5856 glycosyl transferase, group 1; putative glycosyl transferase 3376765 4687340 Pnap_3178 Polaromonas naphthalenivorans CJ2 putative glycosyl transferase YP_983397.1 3375518 R 365044 CDS YP_983398.1 121606069 4687410 complement(3376984..3378072) 1 NC_008781.1 PFAM: acyltransferase 3; KEGG: rsp:RSP_4028 acyltransferase 3 family; acyltransferase 3 3378072 4687410 Pnap_3179 Polaromonas naphthalenivorans CJ2 acyltransferase 3 YP_983398.1 3376984 R 365044 CDS YP_983399.1 121606070 4686075 complement(3378331..3379461) 1 NC_008781.1 KEGG: eli:ELI_01380 hypothetical protein; hypothetical protein 3379461 4686075 Pnap_3180 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983399.1 3378331 R 365044 CDS YP_983400.1 121606071 4687232 complement(3379469..3380281) 1 NC_008781.1 PFAM: glycosyl transferase, family 2; KEGG: bxe:Bxe_C1077 putative glycosyltransferase; glycosyl transferase family protein 3380281 4687232 Pnap_3181 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_983400.1 3379469 R 365044 CDS YP_983401.1 121606072 4687436 complement(3380274..3380831) 1 NC_008781.1 KEGG: bxe:Bxe_C1078 putative acetyltransferase; putative acetyltransferase 3380831 4687436 Pnap_3182 Polaromonas naphthalenivorans CJ2 putative acetyltransferase YP_983401.1 3380274 R 365044 CDS YP_983402.1 121606073 4687446 complement(3380828..3381985) 1 NC_008781.1 PFAM: glycosyl transferase, group 1; KEGG: bxe:Bxe_A3856 putative transferase; group 1 glycosyl transferase 3381985 4687446 Pnap_3183 Polaromonas naphthalenivorans CJ2 group 1 glycosyl transferase YP_983402.1 3380828 R 365044 CDS YP_983403.1 121606074 4686617 complement(3382000..3382671) 1 NC_008781.1 KEGG: sha:SH2127 hypothetical protein; hypothetical protein 3382671 4686617 Pnap_3184 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983403.1 3382000 R 365044 CDS YP_983404.1 121606075 4686576 complement(3382668..3383468) 1 NC_008781.1 PFAM: glycosyl transferase, family 2; KEGG: eli:ELI_12215 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 3383468 4686576 Pnap_3185 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_983404.1 3382668 R 365044 CDS YP_983405.1 121606076 4687490 complement(3383458..3384711) 1 NC_008781.1 KEGG: eli:ELI_12240 hypothetical protein; hypothetical protein 3384711 4687490 Pnap_3186 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983405.1 3383458 R 365044 CDS YP_983406.1 121606077 4687954 complement(3384782..3385783) 1 NC_008781.1 PFAM: glycosyl transferase, family 2; KEGG: ava:Ava_0268 glycosyl transferase, family 2; glycosyl transferase family protein 3385783 4687954 Pnap_3187 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_983406.1 3384782 R 365044 CDS YP_983407.1 121606078 4686603 complement(3385877..3386767) 1 NC_008781.1 exopolysaccharide biosynthesis protein-like protein 3386767 4686603 Pnap_3188 Polaromonas naphthalenivorans CJ2 exopolysaccharide biosynthesis protein-like protein YP_983407.1 3385877 R 365044 CDS YP_983408.1 121606079 4687717 complement(3386777..3388117) 1 NC_008781.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cch:Cag_0665 probable polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3388117 4687717 Pnap_3189 Polaromonas naphthalenivorans CJ2 polysaccharide biosynthesis protein YP_983408.1 3386777 R 365044 CDS YP_983409.1 121606080 4686384 complement(3388472..3389575) 1 NC_008781.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_1237 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 3389575 4686384 Pnap_3190 Polaromonas naphthalenivorans CJ2 GDP-mannose 4,6-dehydratase YP_983409.1 3388472 R 365044 CDS YP_983410.1 121606081 4686620 complement(3389657..3390631) 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_1235 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3390631 4686620 Pnap_3191 Polaromonas naphthalenivorans CJ2 NAD-dependent epimerase/dehydratase YP_983410.1 3389657 R 365044 CDS YP_983411.1 121606082 4686532 complement(3390641..3392101) 1 NC_008781.1 KEGG: pfl:PFL_5483 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 3392101 4686532 Pnap_3192 Polaromonas naphthalenivorans CJ2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_983411.1 3390641 R 365044 CDS YP_983412.1 121606083 4686549 complement(3392217..3392969) 1 NC_008781.1 KEGG: rfr:Rfer_2675 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 3392969 4686549 Pnap_3193 Polaromonas naphthalenivorans CJ2 undecaprenyl diphosphate synthase YP_983412.1 3392217 R 365044 CDS YP_983413.1 121606084 4686276 complement(3392976..3395219) 1 NC_008781.1 TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: rso:RSp1018 eps I polysaccharide export transmembrane protein; exopolysaccharide transport family protein 3395219 4686276 Pnap_3194 Polaromonas naphthalenivorans CJ2 exopolysaccharide transport family protein YP_983413.1 3392976 R 365044 CDS YP_983414.1 121606085 4690142 complement(3395231..3395674) 1 NC_008781.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ade:Adeh_4276 tyrosine phosphatase; protein tyrosine phosphatase 3395674 4690142 Pnap_3195 Polaromonas naphthalenivorans CJ2 protein tyrosine phosphatase YP_983414.1 3395231 R 365044 CDS YP_983415.1 121606086 4686085 complement(3395688..3396863) 1 NC_008781.1 PFAM: polysaccharide export protein; KEGG: bam:Bamb_6483 polysaccharide export protein; polysaccharide export protein 3396863 4686085 Pnap_3196 Polaromonas naphthalenivorans CJ2 polysaccharide export protein YP_983415.1 3395688 R 365044 CDS YP_983416.1 121606087 4686143 complement(3396883..3397122) 1 NC_008781.1 hypothetical protein 3397122 4686143 Pnap_3197 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983416.1 3396883 R 365044 CDS YP_983417.1 121606088 4686179 complement(3397174..3397728) 1 NC_008781.1 PFAM: transcription antitermination protein NusG; KEGG: neu:NE0468 putative transcriptional activator; NusG antitermination factor 3397728 4686179 Pnap_3198 Polaromonas naphthalenivorans CJ2 NusG antitermination factor YP_983417.1 3397174 R 365044 CDS YP_983418.1 121606089 4686164 complement(3398067..3399413) 1 NC_008781.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pol:Bpro_1519 protein of unknown function DUF21; hypothetical protein 3399413 4686164 Pnap_3199 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983418.1 3398067 R 365044 CDS YP_983419.1 121606090 4686439 3399429..3400286 1 NC_008781.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3400286 apaH 4686439 apaH Polaromonas naphthalenivorans CJ2 diadenosine tetraphosphatase YP_983419.1 3399429 D 365044 CDS YP_983420.1 121606091 4686511 complement(3400343..3401272) 1 NC_008781.1 PFAM: ribonuclease BN; KEGG: pol:Bpro_1517 ribonuclease BN; ribonuclease BN 3401272 4686511 Pnap_3201 Polaromonas naphthalenivorans CJ2 ribonuclease BN YP_983420.1 3400343 R 365044 CDS YP_983421.1 121606092 4686157 complement(3401389..3402852) 1 NC_008781.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_1516 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 3402852 4686157 Pnap_3202 Polaromonas naphthalenivorans CJ2 DEAD/DEAH box helicase YP_983421.1 3401389 R 365044 CDS YP_983422.1 121606093 4688782 complement(3403056..3403988) 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: pol:Bpro_3789 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3403988 4688782 Pnap_3203 Polaromonas naphthalenivorans CJ2 NAD-dependent epimerase/dehydratase YP_983422.1 3403056 R 365044 CDS YP_983423.1 121606094 4688556 3404051..3405091 1 NC_008781.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 3405091 4688556 Pnap_3204 Polaromonas naphthalenivorans CJ2 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_983423.1 3404051 D 365044 CDS YP_983424.1 121606095 4688575 complement(3405191..3405910) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3793 ABC transporter related; ABC transporter-like protein 3405910 4688575 Pnap_3205 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983424.1 3405191 R 365044 CDS YP_983425.1 121606096 4687927 complement(3405924..3406691) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3794 ABC transporter related; ABC transporter-like protein 3406691 4687927 Pnap_3206 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983425.1 3405924 R 365044 CDS YP_983426.1 121606097 4688389 complement(3406703..3407815) 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_3795 inner-membrane translocator; inner-membrane translocator 3407815 4688389 Pnap_3207 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_983426.1 3406703 R 365044 CDS YP_983427.1 121606098 4688715 complement(3407851..3408780) 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_3796 inner-membrane translocator; inner-membrane translocator 3408780 4688715 Pnap_3208 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_983427.1 3407851 R 365044 CDS YP_983428.1 121606099 4688281 complement(3409037..3410335) 1 NC_008781.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_3797 AAA ATPase, central region; recombination factor protein RarA 3410335 4688281 Pnap_3209 Polaromonas naphthalenivorans CJ2 recombination factor protein RarA YP_983428.1 3409037 R 365044 CDS YP_983429.1 121606100 4688234 complement(3410387..3411037) 1 NC_008781.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rfr:Rfer_3177 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 3411037 4688234 Pnap_3210 Polaromonas naphthalenivorans CJ2 outer membrane lipoprotein carrier protein LolA YP_983429.1 3410387 R 365044 CDS YP_983430.1 121606101 4687920 complement(3411043..3413499) 1 NC_008781.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: pol:Bpro_3799 cell divisionFtsK/SpoIIIE; cell division protein FtsK 3413499 4687920 Pnap_3211 Polaromonas naphthalenivorans CJ2 cell division protein FtsK YP_983430.1 3411043 R 365044 CDS YP_983431.1 121606102 4688256 complement(3413578..3414267) 1 NC_008781.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pol:Bpro_3800 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 3414267 4688256 Pnap_3212 Polaromonas naphthalenivorans CJ2 CRP/FNR family transcriptional regulator YP_983431.1 3413578 R 365044 CDS YP_983432.1 121606103 4687914 3414439..3415383 1 NC_008781.1 KEGG: pol:Bpro_3801 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 3415383 4687914 Pnap_3213 Polaromonas naphthalenivorans CJ2 thioredoxin reductase YP_983432.1 3414439 D 365044 CDS YP_983433.1 121606104 4687886 3415576..3415809 1 NC_008781.1 required for 70S ribosome assembly; 50S ribosomal protein L28 3415809 rpmB 4687886 rpmB Polaromonas naphthalenivorans CJ2 50S ribosomal protein L28 YP_983433.1 3415576 D 365044 CDS YP_983434.1 121606105 4688143 3415821..3415988 1 NC_008781.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3415988 rpmG 4688143 rpmG Polaromonas naphthalenivorans CJ2 50S ribosomal protein L33 YP_983434.1 3415821 D 365044 CDS YP_983435.1 121606106 4688183 complement(3416221..3417420) 1 NC_008781.1 PFAM: fatty acid desaturase; KEGG: pol:Bpro_3804 fatty acid desaturase; fatty acid desaturase 3417420 4688183 Pnap_3216 Polaromonas naphthalenivorans CJ2 fatty acid desaturase YP_983435.1 3416221 R 365044 CDS YP_983436.1 121606107 4687877 complement(3417600..3418853) 1 NC_008781.1 PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun); Fmu (Sun) domain-containing protein 3418853 4687877 Pnap_3217 Polaromonas naphthalenivorans CJ2 Fmu (Sun) domain-containing protein YP_983436.1 3417600 R 365044 CDS YP_983437.1 121606108 4688348 3418908..3419144 1 NC_008781.1 PFAM: protein of unknown function DUF1653; KEGG: pol:Bpro_3807 protein of unknown function DUF1653; hypothetical protein 3419144 4688348 Pnap_3218 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983437.1 3418908 D 365044 CDS YP_983438.1 121606109 4687774 3419182..3420798 1 NC_008781.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 3420798 prfC 4687774 prfC Polaromonas naphthalenivorans CJ2 peptide chain release factor 3 YP_983438.1 3419182 D 365044 CDS YP_983439.1 121606110 4688032 complement(3420872..3421795) 1 NC_008781.1 KEGG: pol:Bpro_3822 hypothetical protein; hypothetical protein 3421795 4688032 Pnap_3220 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983439.1 3420872 R 365044 CDS YP_983440.1 121606111 4688046 complement(3421845..3422312) 1 NC_008781.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_3830 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 3422312 4688046 Pnap_3221 Polaromonas naphthalenivorans CJ2 AsnC family transcriptional regulator YP_983440.1 3421845 R 365044 CDS YP_983441.1 121606112 4688080 complement(3422342..3422938) 1 NC_008781.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 3422938 purN 4688080 purN Polaromonas naphthalenivorans CJ2 phosphoribosylglycinamide formyltransferase YP_983441.1 3422342 R 365044 CDS YP_983442.1 121606113 4687821 3422957..3423619 1 NC_008781.1 PFAM: protein of unknown function DUF480; KEGG: pol:Bpro_3844 protein of unknown function DUF480; hypothetical protein 3423619 4687821 Pnap_3223 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983442.1 3422957 D 365044 CDS YP_983443.1 121606114 4688000 3423672..3424853 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3845 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3424853 4688000 Pnap_3224 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_983443.1 3423672 D 365044 CDS YP_983444.1 121606115 4687625 3424881..3425996 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3846 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3425996 4687625 Pnap_3225 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_983444.1 3424881 D 365044 CDS YP_983445.1 121606116 4688525 complement(3426001..3426945) 1 NC_008781.1 PFAM: protein of unknown function UPF0187; KEGG: pcr:Pcryo_1229 protein of unknown function UPF0187; hypothetical protein 3426945 4688525 Pnap_3226 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983445.1 3426001 R 365044 CDS YP_983446.1 121606117 4687690 complement(3427025..3427582) 1 NC_008781.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_3847 HNH endonuclease; HNH endonuclease 3427582 4687690 Pnap_3227 Polaromonas naphthalenivorans CJ2 HNH endonuclease YP_983446.1 3427025 R 365044 CDS YP_983447.1 121606118 4687724 3427741..3428766 1 NC_008781.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 3428766 4687724 Pnap_3228 Polaromonas naphthalenivorans CJ2 bifunctional riboflavin kinase/FMN adenylyltransferase YP_983447.1 3427741 D 365044 CDS YP_983448.1 121606119 4687510 3428883..3431717 1 NC_008781.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: pol:Bpro_3849 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 3431717 4687510 Pnap_3229 Polaromonas naphthalenivorans CJ2 isoleucyl-tRNA synthetase YP_983448.1 3428883 D 365044 CDS YP_983449.1 121606120 4687543 3431717..3432256 1 NC_008781.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3432256 lspA 4687543 lspA Polaromonas naphthalenivorans CJ2 lipoprotein signal peptidase YP_983449.1 3431717 D 365044 CDS YP_983450.1 121606121 4687227 3432368..3434026 1 NC_008781.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; KEGG: pol:Bpro_3851 Na/Pi cotransporter II-related; Na/Pi-cotransporter II-like protein 3434026 4687227 Pnap_3231 Polaromonas naphthalenivorans CJ2 Na/Pi-cotransporter II-like protein YP_983450.1 3432368 D 365044 CDS YP_983451.1 121606122 4687377 complement(3434114..3435109) 1 NC_008781.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_3853 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 3435109 4687377 Pnap_3232 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_983451.1 3434114 R 365044 CDS YP_983452.1 121606123 4687359 3435254..3436153 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_1426 protein of unknown function DUF6, transmembrane; hypothetical protein 3436153 4687359 Pnap_3233 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983452.1 3435254 D 365044 CDS YP_983453.1 121606124 4686990 complement(3436166..3436555) 1 NC_008781.1 hypothetical protein 3436555 4686990 Pnap_3234 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983453.1 3436166 R 365044 CDS YP_983454.1 121606125 4686910 complement(3436555..3437349) 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_3876 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3437349 4686910 Pnap_3235 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_983454.1 3436555 R 365044 CDS YP_983455.1 121606126 4687356 complement(3437384..3438361) 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; Protein of unknown function DUF250; KEGG: pol:Bpro_3877 protein of unknown function DUF6, transmembrane; hypothetical protein 3438361 4687356 Pnap_3236 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983455.1 3437384 R 365044 CDS YP_983456.1 121606127 4686968 complement(3438555..3440066) 1 NC_008781.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane; hypothetical protein 3440066 4686968 Pnap_3237 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983456.1 3438555 R 365044 CDS YP_983457.1 121606128 4686975 complement(3440079..3440567) 1 NC_008781.1 PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468; hypothetical protein 3440567 4686975 Pnap_3238 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983457.1 3440079 R 365044 CDS YP_983458.1 121606129 4687568 complement(3440725..3442527) 1 NC_008781.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_3882 type II secretion system protein E; type II secretion system protein E 3442527 4687568 Pnap_3239 Polaromonas naphthalenivorans CJ2 type II secretion system protein E YP_983458.1 3440725 R 365044 CDS YP_983459.1 121606130 4687028 complement(3442569..3443336) 1 NC_008781.1 KEGG: pol:Bpro_3883 hypothetical protein; hypothetical protein 3443336 4687028 Pnap_3240 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983459.1 3442569 R 365044 CDS YP_983460.1 121606131 4687005 complement(3443394..3444473) 1 NC_008781.1 KEGG: rfr:Rfer_4383 hypothetical protein; hypothetical protein 3444473 4687005 Pnap_3241 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983460.1 3443394 R 365044 CDS YP_983461.1 121606132 4686934 complement(3444460..3444957) 1 NC_008781.1 KEGG: pol:Bpro_3884 hypothetical protein; hypothetical protein 3444957 4686934 Pnap_3242 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983461.1 3444460 R 365044 CDS YP_983462.1 121606133 4686814 complement(3444951..3445799) 1 NC_008781.1 PFAM: TatD-related deoxyribonuclease; KEGG: pol:Bpro_3885 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease 3445799 4686814 Pnap_3243 Polaromonas naphthalenivorans CJ2 TatD-like deoxyribonuclease YP_983462.1 3444951 R 365044 CDS YP_983463.1 121606134 4686252 3446078..3447043 1 NC_008781.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: pol:Bpro_3890 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap 3447043 4686252 Pnap_3244 Polaromonas naphthalenivorans CJ2 peptidase S1 and S6, chymotrypsin/Hap YP_983463.1 3446078 D 365044 CDS YP_983464.1 121606135 4686811 3447056..3448075 1 NC_008781.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: pol:Bpro_3891 ATPase associated with various cellular activities, AAA_3; ATPase 3448075 4686811 Pnap_3245 Polaromonas naphthalenivorans CJ2 ATPase YP_983464.1 3447056 D 365044 CDS YP_983465.1 121606136 4686713 3448192..3449178 1 NC_008781.1 PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3892 protein of unknown function DUF58; hypothetical protein 3449178 4686713 Pnap_3246 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983465.1 3448192 D 365044 CDS YP_983466.1 121606137 4686697 3449200..3450264 1 NC_008781.1 PFAM: von Willebrand factor, type A; KEGG: pol:Bpro_3893 von Willebrand factor, type A; von Willebrand factor type A domain-containing protein 3450264 4686697 Pnap_3247 Polaromonas naphthalenivorans CJ2 von Willebrand factor type A domain-containing protein YP_983466.1 3449200 D 365044 CDS YP_983467.1 121606138 4686601 complement(3450401..3450598) 1 NC_008781.1 hypothetical protein 3450598 4686601 Pnap_3248 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983467.1 3450401 R 365044 CDS YP_983468.1 121606139 4686641 complement(3450652..3451803) 1 NC_008781.1 PFAM: Patatin; KEGG: rfr:Rfer_2026 patatin; patatin 3451803 4686641 Pnap_3249 Polaromonas naphthalenivorans CJ2 patatin YP_983468.1 3450652 R 365044 CDS YP_983469.1 121606140 4687302 complement(3451885..3453219) 1 NC_008781.1 KEGG: pol:Bpro_3894 hypothetical protein; hypothetical protein 3453219 4687302 Pnap_3250 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983469.1 3451885 R 365044 CDS YP_983470.1 121606141 4686535 complement(3453255..3454007) 1 NC_008781.1 KEGG: pol:Bpro_3895 hypothetical protein; hypothetical protein 3454007 4686535 Pnap_3251 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983470.1 3453255 R 365044 CDS YP_983471.1 121606142 4686177 complement(3454056..3454655) 1 NC_008781.1 KEGG: pol:Bpro_3896 hypothetical protein; hypothetical protein 3454655 4686177 Pnap_3252 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983471.1 3454056 R 365044 CDS YP_983472.1 121606143 4686457 complement(3454695..3454970) 1 NC_008781.1 PFAM: heat shock protein DnaJ domain protein; KEGG: pol:Bpro_3897 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein 3454970 4686457 Pnap_3253 Polaromonas naphthalenivorans CJ2 heat shock protein DnaJ domain-containing protein YP_983472.1 3454695 R 365044 CDS YP_983473.1 121606144 4686459 3455260..3455757 1 NC_008781.1 KEGG: pol:Bpro_4753 mucin-associated surface protein (MASP); mucin-associated surface protein 3455757 4686459 Pnap_3254 Polaromonas naphthalenivorans CJ2 mucin-associated surface protein YP_983473.1 3455260 D 365044 CDS YP_983474.1 121606145 4686888 complement(3455851..3456807) 1 NC_008781.1 KEGG: rfr:Rfer_3231 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system ATP-binding protein 3456807 4686888 Pnap_3255 Polaromonas naphthalenivorans CJ2 lipoprotein releasing system ATP-binding protein YP_983474.1 3455851 R 365044 CDS YP_983475.1 121606146 4686972 complement(3456800..3458056) 1 NC_008781.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_1014 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 3458056 4686972 Pnap_3256 Polaromonas naphthalenivorans CJ2 LolC/E family lipoprotein releasing system, transmembrane protein YP_983475.1 3456800 R 365044 CDS YP_983476.1 121606147 4686289 3458115..3459065 1 NC_008781.1 KEGG: pol:Bpro_1013 hypothetical protein; hypothetical protein 3459065 4686289 Pnap_3257 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983476.1 3458115 D 365044 CDS YP_983477.1 121606148 4686208 3459112..3460854 1 NC_008781.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: pol:Bpro_1012 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 3460854 4686208 Pnap_3258 Polaromonas naphthalenivorans CJ2 single-stranded-DNA-specific exonuclease RecJ YP_983477.1 3459112 D 365044 CDS YP_983478.1 121606149 4690080 complement(3461143..3462267) 1 NC_008781.1 KEGG: eba:ebA3407 predicted TRAP-type uncharacterized transport system protein, periplasmic component; TRAP-type transport system periplasmic protein 3462267 4690080 Pnap_3259 Polaromonas naphthalenivorans CJ2 TRAP-type transport system periplasmic protein YP_983478.1 3461143 R 365044 CDS YP_983479.1 121606150 4687712 complement(3462300..3462698) 1 NC_008781.1 hypothetical protein 3462698 4687712 Pnap_3260 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983479.1 3462300 R 365044 CDS YP_983480.1 121606151 4687736 complement(3462748..3465753) 1 NC_008781.1 KEGG: gvi:glr0982 hypothetical protein; hypothetical protein 3465753 4687736 Pnap_3261 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983480.1 3462748 R 365044 CDS YP_983481.1 121606152 4687628 complement(3465901..3467301) 1 NC_008781.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: eba:p2A75 hypothetical protein; filamentation induced by cAMP protein fic 3467301 4687628 Pnap_3262 Polaromonas naphthalenivorans CJ2 filamentation induced by cAMP protein fic YP_983481.1 3465901 R 365044 CDS YP_983482.1 121606153 4687671 complement(3467481..3469133) 1 NC_008781.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cfe:CF0624 DNA polymerase III epsilon chain; exonuclease 3469133 4687671 Pnap_3263 Polaromonas naphthalenivorans CJ2 exonuclease YP_983482.1 3467481 R 365044 CDS YP_983483.1 121606154 4687981 complement(3469136..3470494) 1 NC_008781.1 KEGG: tde:TDE0593 internalin-related protein; hypothetical protein 3470494 4687981 Pnap_3264 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983483.1 3469136 R 365044 CDS YP_983484.1 121606155 4688011 complement(3470542..3470772) 1 NC_008781.1 hypothetical protein 3470772 4688011 Pnap_3265 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983484.1 3470542 R 365044 CDS YP_983485.1 121606156 4687999 3470808..3471476 1 NC_008781.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_0022 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 3471476 4687999 Pnap_3266 Polaromonas naphthalenivorans CJ2 CRP/FNR family transcriptional regulator YP_983485.1 3470808 D 365044 CDS YP_983486.1 121606157 4687995 3471579..3471770 1 NC_008781.1 KEGG: rfr:Rfer_0021 hypothetical protein; hypothetical protein 3471770 4687995 Pnap_3267 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983486.1 3471579 D 365044 CDS YP_983487.1 121606158 4688037 3471912..3473015 1 NC_008781.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1011 ABC transporter related; ABC transporter-like protein 3473015 4688037 Pnap_3268 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983487.1 3471912 D 365044 CDS YP_983488.1 121606159 4688023 3473086..3474375 1 NC_008781.1 KEGG: pol:Bpro_1010 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 3474375 4688023 Pnap_3269 Polaromonas naphthalenivorans CJ2 twin-arginine translocation pathway signal protein YP_983488.1 3473086 D 365044 CDS YP_983489.1 121606160 4687452 3474402..3475316 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1009 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3475316 4687452 Pnap_3270 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_983489.1 3474402 D 365044 CDS YP_983490.1 121606161 4688053 3475319..3476203 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1008 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3476203 4688053 Pnap_3271 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_983490.1 3475319 D 365044 CDS YP_983491.1 121606162 4688076 3476200..3476910 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1007 transcriptional regulator, GntR family; GntR family transcriptional regulator 3476910 4688076 Pnap_3272 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_983491.1 3476200 D 365044 CDS YP_983492.1 121606163 4688067 3476919..3477674 1 NC_008781.1 PFAM: Asp/Glu racemase; KEGG: pol:Bpro_1006 Asp/Glu racemase; Asp/Glu racemase 3477674 4688067 Pnap_3273 Polaromonas naphthalenivorans CJ2 Asp/Glu racemase YP_983492.1 3476919 D 365044 CDS YP_983493.1 121606164 4688139 3477743..3478606 1 NC_008781.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pol:Bpro_1005 PHP-like; phosphotransferase domain-containing protein 3478606 4688139 Pnap_3274 Polaromonas naphthalenivorans CJ2 phosphotransferase domain-containing protein YP_983493.1 3477743 D 365044 CDS YP_983494.1 121606165 4687795 3478603..3479508 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_1004 putative transmembrane protein; hypothetical protein 3479508 4687795 Pnap_3275 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983494.1 3478603 D 365044 CDS YP_983495.1 121606166 4688081 3479519..3480154 1 NC_008781.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_1003 SUA5/YciO/YrdC/YwlC; Sua5/YciO/YrdC/YwlC family protein 3480154 4688081 Pnap_3276 Polaromonas naphthalenivorans CJ2 Sua5/YciO/YrdC/YwlC family protein YP_983495.1 3479519 D 365044 CDS YP_983496.1 121606167 4688154 3480188..3480856 1 NC_008781.1 PFAM: peptidase M50; KEGG: rfr:Rfer_3239 peptidase M50; peptidase M50 3480856 4688154 Pnap_3277 Polaromonas naphthalenivorans CJ2 peptidase M50 YP_983496.1 3480188 D 365044 CDS YP_983497.1 121606168 4687873 3480892..3482211 1 NC_008781.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3482211 4687873 Pnap_3278 Polaromonas naphthalenivorans CJ2 tryptophanyl-tRNA synthetase YP_983497.1 3480892 D 365044 CDS YP_983498.1 121606169 4688179 complement(3482291..3482476) 1 NC_008781.1 PFAM: CsbD family protein; KEGG: nmu:Nmul_A1602 CsbD-like; CsbD family protein 3482476 4688179 Pnap_3279 Polaromonas naphthalenivorans CJ2 CsbD family protein YP_983498.1 3482291 R 365044 CDS YP_983499.1 121606170 4688165 complement(3482574..3483314) 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_2270 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3483314 4688165 Pnap_3280 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_983499.1 3482574 R 365044 CDS YP_983500.1 121606171 4688201 complement(3483311..3485353) 1 NC_008781.1 KEGG: rfr:Rfer_2271 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 3485353 4688201 Pnap_3281 Polaromonas naphthalenivorans CJ2 PAS/PAC sensor hybrid histidine kinase YP_983500.1 3483311 R 365044 CDS YP_983501.1 121606172 4688204 3485535..3487175 1 NC_008781.1 PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA3433 acyl-CoA synthase; AMP-dependent synthetase and ligase 3487175 4688204 Pnap_3282 Polaromonas naphthalenivorans CJ2 AMP-dependent synthetase and ligase YP_983501.1 3485535 D 365044 CDS YP_983502.1 121606173 4688578 3487298..3488983 1 NC_008781.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pol:Bpro_1895 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 3488983 4688578 Pnap_3283 Polaromonas naphthalenivorans CJ2 electron-transferring-flavoprotein dehydrogenase YP_983502.1 3487298 D 365044 CDS YP_983503.1 121606174 4688719 3489028..3489504 1 NC_008781.1 PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_C6351 MaoC-like dehydratase; dehydratase 3489504 4688719 Pnap_3284 Polaromonas naphthalenivorans CJ2 dehydratase YP_983503.1 3489028 D 365044 CDS YP_983504.1 121606175 4688226 3489541..3491322 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2268 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3491322 4688226 Pnap_3285 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_983504.1 3489541 D 365044 CDS YP_983505.1 121606176 4688079 3491392..3491709 1 NC_008781.1 PFAM: protein of unknown function DUF485; KEGG: dar:Daro_4011 protein of unknown function DUF485; hypothetical protein 3491709 4688079 Pnap_3286 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983505.1 3491392 D 365044 CDS YP_983506.1 121606177 4688566 3491706..3493382 1 NC_008781.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 3493382 4688566 Pnap_3287 Polaromonas naphthalenivorans CJ2 acetate permease YP_983506.1 3491706 D 365044 CDS YP_983507.1 121606178 4688548 complement(3494949..3495995) 1 NC_008781.1 TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: bma:BMA2691 phage portal protein, PBSX family; PBSX family phage portal protein 3495995 4688548 Pnap_3288 Polaromonas naphthalenivorans CJ2 PBSX family phage portal protein YP_983507.1 3494949 R 365044 CDS YP_983508.1 121606179 4688549 complement(3495995..3497785) 1 NC_008781.1 PFAM: protein of unknown function DUF264; putative terminase ATPase subunit; KEGG: bps:BPSL0172 phage terminase, ATPase subunit; hypothetical protein 3497785 4688549 Pnap_3289 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983508.1 3495995 R 365044 CDS YP_983509.1 121606180 4688564 3497851..3498771 1 NC_008781.1 PFAM: phage capsid scaffolding; KEGG: xom:XOO_1608 phage-related capsid scaffold protein; phage capsid scaffolding 3498771 4688564 Pnap_3290 Polaromonas naphthalenivorans CJ2 phage capsid scaffolding YP_983509.1 3497851 D 365044 CDS YP_983510.1 121606181 4688544 3498821..3499828 1 NC_008781.1 TIGRFAM: phage major capsid protein, P2 family; PFAM: phage major capsid protein, P2; KEGG: rso:RSc1937 probable bacteriophage protein; P2 family phage major capsid protein 3499828 4688544 Pnap_3291 Polaromonas naphthalenivorans CJ2 P2 family phage major capsid protein YP_983510.1 3498821 D 365044 CDS YP_983511.1 121606182 4688580 3499834..3500616 1 NC_008781.1 PFAM: phage small terminase subunit; KEGG: rso:RSc1936 probable bacteriophage protein; phage small terminase subunit 3500616 4688580 Pnap_3292 Polaromonas naphthalenivorans CJ2 phage small terminase subunit YP_983511.1 3499834 D 365044 CDS YP_983512.1 121606183 4688532 3500647..3501111 1 NC_008781.1 PFAM: phage head completion; KEGG: bps:BPSL0168 phage head completion/stabilization protein; phage head completion 3501111 4688532 Pnap_3293 Polaromonas naphthalenivorans CJ2 phage head completion YP_983512.1 3500647 D 365044 CDS YP_983513.1 121606184 4688536 3501111..3501317 1 NC_008781.1 PFAM: phage tail X family protein; KEGG: spt:SPA2577 putative phage tail protein; phage tail X family protein 3501317 4688536 Pnap_3294 Polaromonas naphthalenivorans CJ2 phage tail X family protein YP_983513.1 3501111 D 365044 CDS YP_983514.1 121606185 4688577 3501321..3501539 1 NC_008781.1 hypothetical protein 3501539 4688577 Pnap_3295 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983514.1 3501321 D 365044 CDS YP_983515.1 121606186 4688572 3501536..3502048 1 NC_008781.1 KEGG: son:SO2973 prophage LambdaSo, lysozyme, putative; prophage LambdaSo, lysozyme 3502048 4688572 Pnap_3296 Polaromonas naphthalenivorans CJ2 prophage LambdaSo, lysozyme YP_983515.1 3501536 D 365044 CDS YP_983516.1 121606187 4688740 3502045..3502551 1 NC_008781.1 KEGG: pfl:PFL_2019 phage protein, putative; phage protein 3502551 4688740 Pnap_3297 Polaromonas naphthalenivorans CJ2 phage protein YP_983516.1 3502045 D 365044 CDS YP_983517.1 121606188 4688571 3502553..3502981 1 NC_008781.1 PFAM: P2 phage tail completion R family protein; KEGG: rso:RSc1929 probable tail completion-like protein; P2 phage tail completion R family protein 3502981 4688571 Pnap_3298 Polaromonas naphthalenivorans CJ2 P2 phage tail completion R family protein YP_983517.1 3502553 D 365044 CDS YP_983518.1 121606189 4688565 3502985..3503452 1 NC_008781.1 TIGRFAM: phage virion morphogenesis protein; PFAM: phage virion morphogenesis (putative tail completion) protein; KEGG: bps:BPSL0159 phage tail completion protein; phage virion morphogenesis protein 3503452 4688565 Pnap_3299 Polaromonas naphthalenivorans CJ2 phage virion morphogenesis protein YP_983518.1 3502985 D 365044 CDS YP_983519.1 121606190 4688568 3503525..3504178 1 NC_008781.1 PFAM: phage baseplate assembly protein V; KEGG: bps:BPSL0156 phage baseplate assembly protein; phage baseplate assembly protein V 3504178 4688568 Pnap_3300 Polaromonas naphthalenivorans CJ2 phage baseplate assembly protein V YP_983519.1 3503525 D 365044 CDS YP_983520.1 121606191 4688561 3504175..3504546 1 NC_008781.1 PFAM: GPW/gp25 family protein; KEGG: syf:Synpcc7942_0739 hypothetical protein; GPW/gp25 family protein 3504546 4688561 Pnap_3301 Polaromonas naphthalenivorans CJ2 GPW/gp25 family protein YP_983520.1 3504175 D 365044 CDS YP_983521.1 121606192 4688562 3504543..3505430 1 NC_008781.1 PFAM: Baseplate J family protein; KEGG: sit:TM1040_1291 baseplate J-like protein; baseplate J family protein 3505430 4688562 Pnap_3302 Polaromonas naphthalenivorans CJ2 baseplate J family protein YP_983521.1 3504543 D 365044 CDS YP_983522.1 121606193 4688741 3505423..3506100 1 NC_008781.1 TIGRFAM: phage tail protein I; KEGG: sit:TM1040_1290 phage tail protein I; phage tail protein I 3506100 4688741 Pnap_3303 Polaromonas naphthalenivorans CJ2 phage tail protein I YP_983522.1 3505423 D 365044 CDS YP_983523.1 121606194 4688560 3506107..3507903 1 NC_008781.1 hypothetical protein 3507903 4688560 Pnap_3304 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983523.1 3506107 D 365044 CDS YP_983524.1 121606195 4688554 3507908..3508645 1 NC_008781.1 KEGG: bte:BTH_II1774 serine protease, subtilase family; hypothetical protein 3508645 4688554 Pnap_3305 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983524.1 3507908 D 365044 CDS YP_983525.1 121606196 4688550 3508784..3510235 1 NC_008781.1 PFAM: phage Tail Collar domain protein; KEGG: sit:TM1040_1289 putative variable tail fibre protein; phage tail collar domain-containing protein 3510235 4688550 Pnap_3306 Polaromonas naphthalenivorans CJ2 phage tail collar domain-containing protein YP_983525.1 3508784 D 365044 CDS YP_983526.1 121606197 4688552 3510241..3510531 1 NC_008781.1 KEGG: bbr:BB3608 putative tail fiber assembly protein; hypothetical protein 3510531 4688552 Pnap_3307 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983526.1 3510241 D 365044 CDS YP_983527.1 121606198 4688553 3510544..3511719 1 NC_008781.1 PFAM: phage tail sheath protein; KEGG: yps:YPTB1841 putative bacteriophage P2 tail sheath protein; phage tail sheath protein 3511719 4688553 Pnap_3308 Polaromonas naphthalenivorans CJ2 phage tail sheath protein YP_983527.1 3510544 D 365044 CDS YP_983528.1 121606199 4688546 3511745..3512257 1 NC_008781.1 PFAM: phage major tail tube protein; KEGG: xom:XOO_1589 phage-related tail protein; phage major tail tube protein 3512257 4688546 Pnap_3309 Polaromonas naphthalenivorans CJ2 phage major tail tube protein YP_983528.1 3511745 D 365044 CDS YP_983529.1 121606200 4688547 3512319..3512561 1 NC_008781.1 KEGG: bxe:Bxe_A3076 hypothetical protein; hypothetical protein 3512561 4688547 Pnap_3310 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983529.1 3512319 D 365044 CDS YP_983530.1 121606201 4688545 3512593..3512949 1 NC_008781.1 PFAM: phage tail E family protein; KEGG: rso:RSc1916 probable phage-related protein; phage tail E family protein 3512949 4688545 Pnap_3311 Polaromonas naphthalenivorans CJ2 phage tail E family protein YP_983530.1 3512593 D 365044 CDS YP_983531.1 121606202 4688541 3512958..3513074 1 NC_008781.1 PFAM: phage P2 GpE family protein; KEGG: csa:Csal_1376 phage P2 GpE; phage P2 GpE family protein 3513074 4688541 Pnap_3312 Polaromonas naphthalenivorans CJ2 phage P2 GpE family protein YP_983531.1 3512958 D 365044 CDS YP_983532.1 121606203 4688542 3513109..3515700 1 NC_008781.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: spt:SPA2558 hypothetical protein; TP901 family phage tail tape measure protein 3515700 4688542 Pnap_3313 Polaromonas naphthalenivorans CJ2 TP901 family phage tail tape measure protein YP_983532.1 3513109 D 365044 CDS YP_983533.1 121606204 4688540 3515721..3516170 1 NC_008781.1 PFAM: phage P2 GpU family protein; KEGG: xom:XOO_1585 phage-related tail protein; phage P2 GpU family protein 3516170 4688540 Pnap_3314 Polaromonas naphthalenivorans CJ2 phage P2 GpU family protein YP_983533.1 3515721 D 365044 CDS YP_983534.1 121606205 4688539 3516176..3517210 1 NC_008781.1 PFAM: phage late control D family protein; KEGG: xcc:XCC2994 phage-related tail protein; phage late control D family protein 3517210 4688539 Pnap_3315 Polaromonas naphthalenivorans CJ2 phage late control D family protein YP_983534.1 3516176 D 365044 CDS YP_983535.1 121606206 4688537 complement(3517327..3517707) 1 NC_008781.1 SMART: helix-turn-helix domain protein; KEGG: yps:YPTB1870 putative prophage transcriptional regulator; XRE family transcriptional regulator 3517707 4688537 Pnap_3316 Polaromonas naphthalenivorans CJ2 XRE family transcriptional regulator YP_983535.1 3517327 R 365044 CDS YP_983536.1 121606207 4688535 3517738..3517989 1 NC_008781.1 hypothetical protein 3517989 4688535 Pnap_3317 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983536.1 3517738 D 365044 CDS YP_983537.1 121606208 4688625 3518384..3518809 1 NC_008781.1 PFAM: phage transcriptional activator, Ogr/delta; KEGG: bps:BPSL0138 hypothetical protein; phage transcriptional activator, Ogr/delta 3518809 4688625 Pnap_3319 Polaromonas naphthalenivorans CJ2 phage transcriptional activator, Ogr/delta YP_983537.1 3518384 D 365044 CDS YP_983538.1 121606209 4688423 3518806..3521694 1 NC_008781.1 KEGG: rso:RSc1898 hypothetical phage-related protein; phage-like protein 3521694 4688423 Pnap_3320 Polaromonas naphthalenivorans CJ2 phage-like protein YP_983538.1 3518806 D 365044 CDS YP_983539.1 121606210 4688531 3521742..3522446 1 NC_008781.1 hypothetical protein 3522446 4688531 Pnap_3321 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983539.1 3521742 D 365044 CDS YP_983540.1 121606211 4688530 3522468..3523019 1 NC_008781.1 KEGG: ecs:ECs2967 putative antirepressor protein; hypothetical protein 3523019 4688530 Pnap_3322 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983540.1 3522468 D 365044 CDS YP_983541.1 121606212 4688402 complement(3523122..3523514) 1 NC_008781.1 KEGG: eli:ELI_07220 hypothetical protein; hypothetical protein 3523514 4688402 Pnap_3323 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983541.1 3523122 R 365044 CDS YP_983542.1 121606213 4688739 complement(3523536..3523949) 1 NC_008781.1 hypothetical protein 3523949 4688739 Pnap_3324 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983542.1 3523536 R 365044 CDS YP_983543.1 121606214 4688557 3524305..3524925 1 NC_008781.1 hypothetical protein 3524925 4688557 Pnap_3325 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983543.1 3524305 D 365044 CDS YP_983544.1 121606215 4688784 3524922..3525419 1 NC_008781.1 hypothetical protein 3525419 4688784 Pnap_3326 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983544.1 3524922 D 365044 CDS YP_983545.1 121606216 4688828 3525416..3526450 1 NC_008781.1 KEGG: bbr:BB1683 phage-related hypothetical protein; hypothetical protein 3526450 4688828 Pnap_3327 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983545.1 3525416 D 365044 CDS YP_983546.1 121606217 4688606 3526465..3527712 1 NC_008781.1 KEGG: sde:Sde_3589 putative CheA signal transduction histidine kinases; hypothetical protein 3527712 4688606 Pnap_3328 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983546.1 3526465 D 365044 CDS YP_983547.1 121606218 4688795 3527712..3527978 1 NC_008781.1 hypothetical protein 3527978 4688795 Pnap_3329 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983547.1 3527712 D 365044 CDS YP_983548.1 121606219 4688350 3528270..3528686 1 NC_008781.1 hypothetical protein 3528686 4688350 Pnap_3330 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983548.1 3528270 D 365044 CDS YP_983549.1 121606220 4688911 3528683..3529627 1 NC_008781.1 PFAM: phage Gp37Gp68 family protein; KEGG: bpm:BURPS1710b_1658 GP38; phage Gp37Gp68 family protein 3529627 4688911 Pnap_3331 Polaromonas naphthalenivorans CJ2 phage Gp37Gp68 family protein YP_983549.1 3528683 D 365044 CDS YP_983550.1 121606221 4688940 3529624..3529881 1 NC_008781.1 KEGG: reu:Reut_B3669 hypothetical protein; hypothetical protein 3529881 4688940 Pnap_3332 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983550.1 3529624 D 365044 CDS YP_983551.1 121606222 4688942 3530357..3530581 1 NC_008781.1 PFAM: Prophage CP4-57 regulatory; KEGG: bte:BTH_II2006 prophage regulatory protein AlpA family protein; phage transcriptional regulator AlpA 3530581 4688942 Pnap_3333 Polaromonas naphthalenivorans CJ2 phage transcriptional regulator AlpA YP_983551.1 3530357 D 365044 CDS YP_983552.1 121606223 4688675 complement(3530589..3531785) 1 NC_008781.1 PFAM: phage integrase family protein; KEGG: pol:Bpro_0966 phage integrase; phage integrase family protein 3531785 4688675 Pnap_3334 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_983552.1 3530589 R 365044 CDS YP_983553.1 121606224 4689182 complement(3532055..3533389) 1 NC_008781.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 3533389 4689182 Pnap_3335 Polaromonas naphthalenivorans CJ2 seryl-tRNA synthetase YP_983553.1 3532055 R 365044 CDS YP_983554.1 121606225 4689357 complement(3533439..3534383) 1 NC_008781.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 3534383 4689357 Pnap_3336 Polaromonas naphthalenivorans CJ2 threonine dehydratase YP_983554.1 3533439 R 365044 CDS YP_983555.1 121606226 4689151 complement(3534390..3535385) 1 NC_008781.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3535385 ispH 4689151 ispH Polaromonas naphthalenivorans CJ2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_983555.1 3534390 R 365044 CDS YP_983556.1 121606227 4689148 complement(3535388..3535885) 1 NC_008781.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_0950 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 3535885 4689148 Pnap_3338 Polaromonas naphthalenivorans CJ2 FKBP-type peptidylprolyl isomerase YP_983556.1 3535388 R 365044 CDS YP_983557.1 121606228 4689149 3536089..3536763 1 NC_008781.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3536763 radC 4689149 radC Polaromonas naphthalenivorans CJ2 DNA repair protein RadC YP_983557.1 3536089 D 365044 CDS YP_983558.1 121606229 4689146 3536800..3537483 1 NC_008781.1 PFAM: Smr protein/MutS2; KEGG: pol:Bpro_0947 Smr protein/MutS2; Smr protein/MutS2 3537483 4689146 Pnap_3340 Polaromonas naphthalenivorans CJ2 Smr protein/MutS2 YP_983558.1 3536800 D 365044 CDS YP_983559.1 121606230 4689144 complement(3537567..3538394) 1 NC_008781.1 PFAM: regulatory protein, LuxR; KEGG: DNA-binding response regulator, LuxR family; response regulator receiver protein 3538394 4689144 Pnap_3341 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_983559.1 3537567 R 365044 CDS YP_983560.1 121606231 4689365 3538518..3538748 1 NC_008781.1 KEGG: rfr:Rfer_3961 hypothetical protein; hypothetical protein 3538748 4689365 Pnap_3342 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983560.1 3538518 D 365044 CDS YP_983561.1 121606232 4689166 complement(3538798..3539535) 1 NC_008781.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_1147 phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 3539535 4689166 Pnap_3343 Polaromonas naphthalenivorans CJ2 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_983561.1 3538798 R 365044 CDS YP_983562.1 121606233 4689061 complement(3539595..3540890) 1 NC_008781.1 KEGG: pol:Bpro_1146 allantoinase; allantoinase 3540890 4689061 Pnap_3344 Polaromonas naphthalenivorans CJ2 allantoinase YP_983562.1 3539595 R 365044 CDS YP_983563.1 121606234 4689140 complement(3540931..3541893) 1 NC_008781.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 3541893 pyrB 4689140 pyrB Polaromonas naphthalenivorans CJ2 aspartate carbamoyltransferase catalytic subunit YP_983563.1 3540931 R 365044 CDS YP_983564.1 121606235 4689043 complement(3541921..3542439) 1 NC_008781.1 PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_1144 phosphoribosyltransferase; phosphoribosyltransferase 3542439 4689043 Pnap_3346 Polaromonas naphthalenivorans CJ2 phosphoribosyltransferase YP_983564.1 3541921 R 365044 CDS YP_983565.1 121606236 4688895 complement(3542432..3542902) 1 NC_008781.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3542902 4688895 Pnap_3347 Polaromonas naphthalenivorans CJ2 Holliday junction resolvase-like protein YP_983565.1 3542432 R 365044 CDS YP_983566.1 121606237 4689181 complement(3542895..3543485) 1 NC_008781.1 PFAM: protein of unknown function DUF179; KEGG: pol:Bpro_1142 protein of unknown function DUF179; hypothetical protein 3543485 4689181 Pnap_3348 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983566.1 3542895 R 365044 CDS YP_983567.1 121606238 4689157 3543643..3545076 1 NC_008781.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: rfr:Rfer_1376 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase 3545076 4689157 Pnap_3349 Polaromonas naphthalenivorans CJ2 deoxyribodipyrimidine photo-lyase YP_983567.1 3543643 D 365044 CDS YP_983568.1 121606239 4689495 complement(3545135..3551047) 1 NC_008781.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: pol:Bpro_1140 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 3551047 4689495 Pnap_3350 Polaromonas naphthalenivorans CJ2 CheA signal transduction histidine kinase YP_983568.1 3545135 R 365044 CDS YP_983569.1 121606240 4689490 complement(3551103..3553382) 1 NC_008781.1 PFAM: chemotaxis sensory transducer; KEGG: pol:Bpro_1139 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3553382 4689490 Pnap_3351 Polaromonas naphthalenivorans CJ2 methyl-accepting chemotaxis sensory transducer YP_983569.1 3551103 R 365044 CDS YP_983570.1 121606241 4689505 complement(3553419..3553949) 1 NC_008781.1 KEGG: pol:Bpro_1138 CheW-like protein; putative CheW protein 3553949 4689505 Pnap_3352 Polaromonas naphthalenivorans CJ2 putative CheW protein YP_983570.1 3553419 R 365044 CDS YP_983571.1 121606242 4689248 complement(3553971..3554336) 1 NC_008781.1 PFAM: response regulator receiver; KEGG: pol:Bpro_1137 response regulator receiver domain protein (CheY-like); response regulator receiver protein 3554336 4689248 Pnap_3353 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_983571.1 3553971 R 365044 CDS YP_983572.1 121606243 4689617 complement(3554336..3554779) 1 NC_008781.1 PFAM: response regulator receiver; KEGG: pol:Bpro_1136 response regulator receiver domain protein (CheY-like); response regulator receiver protein 3554779 4689617 Pnap_3354 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_983572.1 3554336 R 365044 CDS YP_983573.1 121606244 4689278 complement(3554815..3554988) 1 NC_008781.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pol:Bpro_1135 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 3554988 4689278 Pnap_3355 Polaromonas naphthalenivorans CJ2 rubredoxin-type Fe(Cys)4 protein YP_983573.1 3554815 R 365044 CDS YP_983574.1 121606245 4689624 3555071..3556045 1 NC_008781.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: pol:Bpro_1134 putative phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase type-1 3556045 4689624 Pnap_3356 Polaromonas naphthalenivorans CJ2 phosphomethylpyrimidine kinase type-1 YP_983574.1 3555071 D 365044 CDS YP_983575.1 121606246 4689643 3556026..3557354 1 NC_008781.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3557354 4689643 Pnap_3357 Polaromonas naphthalenivorans CJ2 glutamate-1-semialdehyde aminotransferase YP_983575.1 3556026 D 365044 CDS YP_983576.1 121606247 4690068 complement(3557518..3559116) 1 NC_008781.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3559116 purH 4690068 purH Polaromonas naphthalenivorans CJ2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_983576.1 3557518 R 365044 CDS YP_983577.1 121606248 4690105 complement(3559172..3559408) 1 NC_008781.1 PFAM: helix-turn-helix, Fis-type; KEGG: pol:Bpro_1131 transcriptional regulator, fis family; Fis family transcriptional regulator 3559408 4690105 Pnap_3359 Polaromonas naphthalenivorans CJ2 Fis family transcriptional regulator YP_983577.1 3559172 R 365044 CDS YP_983578.1 121606249 4690133 complement(3559405..3560475) 1 NC_008781.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_1130 dihydrouridine synthase TIM-barrel protein nifR3; nifR3 family TIM-barrel protein 3560475 4690133 Pnap_3360 Polaromonas naphthalenivorans CJ2 nifR3 family TIM-barrel protein YP_983578.1 3559405 R 365044 CDS YP_983579.1 121606250 4690181 3560620..3561102 1 NC_008781.1 KEGG: pol:Bpro_1129 hypothetical protein; hypothetical protein 3561102 4690181 Pnap_3361 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983579.1 3560620 D 365044 CDS YP_983580.1 121606251 4690145 complement(3561099..3561854) 1 NC_008781.1 PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_1128 RNA-binding S4; RNA-binding S4 domain-containing protein 3561854 4690145 Pnap_3362 Polaromonas naphthalenivorans CJ2 RNA-binding S4 domain-containing protein YP_983580.1 3561099 R 365044 CDS YP_983581.1 121606252 4690146 complement(3562008..3563099) 1 NC_008781.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 3563099 4690146 Pnap_3363 Polaromonas naphthalenivorans CJ2 GTP-dependent nucleic acid-binding protein EngD YP_983581.1 3562008 R 365044 CDS YP_983582.1 121606253 4690030 complement(3563277..3565067) 1 NC_008781.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: bja:blr2848 probable sulphate transport protein; sulfate transporter 3565067 4690030 Pnap_3364 Polaromonas naphthalenivorans CJ2 sulfate transporter YP_983582.1 3563277 R 365044 CDS YP_983583.1 121606254 4689401 complement(3565067..3565975) 1 NC_008781.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: pol:Bpro_1126 MOSC-like beta barrel; MOSC domain-containing protein 3565975 4689401 Pnap_3365 Polaromonas naphthalenivorans CJ2 MOSC domain-containing protein YP_983583.1 3565067 R 365044 CDS YP_983584.1 121606255 4690050 3566037..3567170 1 NC_008781.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: pol:Bpro_1125 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3567170 4690050 Pnap_3366 Polaromonas naphthalenivorans CJ2 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_983584.1 3566037 D 365044 CDS YP_983585.1 121606256 4689821 3567211..3567948 1 NC_008781.1 KEGG: pol:Bpro_1124 putative thiol:disulphide interchange protein (periplasmic); putative thiol:disulfide interchange protein 3567948 4689821 Pnap_3367 Polaromonas naphthalenivorans CJ2 putative thiol:disulfide interchange protein YP_983585.1 3567211 D 365044 CDS YP_983586.1 121606257 4689901 3568092..3569894 1 NC_008781.1 PFAM: peptidase M61 domain protein; KEGG: pol:Bpro_1123 peptidase M61; peptidase M61 domain-containing protein 3569894 4689901 Pnap_3368 Polaromonas naphthalenivorans CJ2 peptidase M61 domain-containing protein YP_983586.1 3568092 D 365044 CDS YP_983587.1 121606258 4689916 3569980..3570768 1 NC_008781.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1122 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3570768 4689916 Pnap_3369 Polaromonas naphthalenivorans CJ2 enoyl-CoA hydratase/isomerase YP_983587.1 3569980 D 365044 CDS YP_983588.1 121606259 4689437 3571070..3571687 1 NC_008781.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: pol:Bpro_4730 channel protein, hemolysin III family; hemolysin III family channel protein 3571687 4689437 Pnap_3370 Polaromonas naphthalenivorans CJ2 hemolysin III family channel protein YP_983588.1 3571070 D 365044 CDS YP_983589.1 121606260 4689759 3571782..3572393 1 NC_008781.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: rso:RSc2905 putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase protein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3572393 4689759 Pnap_3371 Polaromonas naphthalenivorans CJ2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_983589.1 3571782 D 365044 CDS YP_983590.1 121606261 4689696 3572510..3572947 1 NC_008781.1 KEGG: pol:Bpro_1121 hypothetical protein; hypothetical protein 3572947 4689696 Pnap_3372 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983590.1 3572510 D 365044 CDS YP_983591.1 121606262 4689739 3573055..3574398 1 NC_008781.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3574398 4689739 Pnap_3373 Polaromonas naphthalenivorans CJ2 (dimethylallyl)adenosine tRNA methylthiotransferase YP_983591.1 3573055 D 365044 CDS YP_983592.1 121606263 4689800 3574388..3575851 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1119 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3575851 4689800 Pnap_3374 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_983592.1 3574388 D 365044 CDS YP_983593.1 121606264 4689627 3575835..3576548 1 NC_008781.1 KEGG: pol:Bpro_1118 hypothetical protein; hypothetical protein 3576548 4689627 Pnap_3375 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983593.1 3575835 D 365044 CDS YP_983594.1 121606265 4689228 3576545..3577933 1 NC_008781.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1117 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54 specific transcriptional regulator 3577933 4689228 Pnap_3376 Polaromonas naphthalenivorans CJ2 Fis family two component sigma-54 specific transcriptional regulator YP_983594.1 3576545 D 365044 CDS YP_983595.1 121606266 4689465 3578136..3579719 1 NC_008781.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 3579719 mdoG 4689465 mdoG Polaromonas naphthalenivorans CJ2 glucan biosynthesis protein G YP_983595.1 3578136 D 365044 CDS YP_983596.1 121606267 4689457 3579791..3581686 1 NC_008781.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 3581686 4689457 Pnap_3378 Polaromonas naphthalenivorans CJ2 glucosyltransferase MdoH YP_983596.1 3579791 D 365044 CDS YP_983597.1 121606268 4689398 complement(3581797..3583155) 1 NC_008781.1 KEGG: pol:Bpro_1114 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle protein 3583155 4689398 Pnap_3379 Polaromonas naphthalenivorans CJ2 signal recognition particle protein YP_983597.1 3581797 R 365044 CDS YP_983598.1 121606269 4689041 3583232..3584032 1 NC_008781.1 PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_1113 cytochrome c assembly protein; cytochrome c assembly protein 3584032 4689041 Pnap_3380 Polaromonas naphthalenivorans CJ2 cytochrome c assembly protein YP_983598.1 3583232 D 365044 CDS YP_983599.1 121606270 4689064 3584029..3584274 1 NC_008781.1 KEGG: pol:Bpro_1112 hypothetical protein; hypothetical protein 3584274 4689064 Pnap_3381 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983599.1 3584029 D 365044 CDS YP_983600.1 121606271 4689118 3584271..3585989 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1111 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3585989 4689118 Pnap_3382 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_983600.1 3584271 D 365044 CDS YP_983601.1 121606272 4689984 3585996..3587423 1 NC_008781.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: pol:Bpro_1110 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54 specific transcriptional regulator 3587423 4689984 Pnap_3383 Polaromonas naphthalenivorans CJ2 Fis family two component sigma-54 specific transcriptional regulator YP_983601.1 3585996 D 365044 CDS YP_983602.1 121606273 4689855 3587410..3588012 1 NC_008781.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pol:Bpro_1109 negative regulator of AmpC, AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase 3588012 4689855 Pnap_3384 Polaromonas naphthalenivorans CJ2 N-acetyl-anhydromuranmyl-L-alanine amidase YP_983602.1 3587410 D 365044 CDS YP_983603.1 121606274 4690010 3588421..3591324 1 NC_008781.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3591324 4690010 Pnap_3385 Polaromonas naphthalenivorans CJ2 ribonucleotide-diphosphate reductase subunit alpha YP_983603.1 3588421 D 365044 CDS YP_983604.1 121606275 4689029 3591482..3592645 1 NC_008781.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 3592645 4689029 Pnap_3386 Polaromonas naphthalenivorans CJ2 ribonucleotide-diphosphate reductase subunit beta YP_983604.1 3591482 D 365044 CDS YP_983605.1 121606276 4688987 3592855..3593415 1 NC_008781.1 KEGG: pol:Bpro_1105 histone protein; histone protein 3593415 4688987 Pnap_3387 Polaromonas naphthalenivorans CJ2 histone protein YP_983605.1 3592855 D 365044 CDS YP_983606.1 121606277 4689035 complement(3593544..3594467) 1 NC_008781.1 PFAM: PfkB domain protein; KEGG: pol:Bpro_1103 PfkB; ribokinase-like domain-containing protein 3594467 4689035 Pnap_3388 Polaromonas naphthalenivorans CJ2 ribokinase-like domain-containing protein YP_983606.1 3593544 R 365044 CDS YP_983607.1 121606278 4689081 complement(3594487..3595476) 1 NC_008781.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: pol:Bpro_1102 zinc finger/thioredoxin putative; Zinc finger-domain-containing protein 3595476 4689081 Pnap_3389 Polaromonas naphthalenivorans CJ2 Zinc finger-domain-containing protein YP_983607.1 3594487 R 365044 CDS YP_983608.1 121606279 4689604 complement(3595542..3596435) 1 NC_008781.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3596435 prmA 4689604 prmA Polaromonas naphthalenivorans CJ2 50S ribosomal protein L11 methyltransferase YP_983608.1 3595542 R 365044 CDS YP_983609.1 121606280 4688954 complement(3596557..3597906) 1 NC_008781.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_1100 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 3597906 4688954 Pnap_3391 Polaromonas naphthalenivorans CJ2 acetyl-CoA carboxylase, biotin carboxylase YP_983609.1 3596557 R 365044 CDS YP_983610.1 121606281 4688882 complement(3597980..3598426) 1 NC_008781.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pol:Bpro_1099 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 3598426 4688882 Pnap_3392 Polaromonas naphthalenivorans CJ2 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_983610.1 3597980 R 365044 CDS YP_983611.1 121606282 4688907 complement(3598762..3599280) 1 NC_008781.1 PFAM: Redoxin domain protein; KEGG: pol:Bpro_1098 thioredoxin family protein, putative; redoxin domain-containing protein 3599280 4688907 Pnap_3393 Polaromonas naphthalenivorans CJ2 redoxin domain-containing protein YP_983611.1 3598762 R 365044 CDS YP_983612.1 121606283 4688982 complement(3599299..3599895) 1 NC_008781.1 KEGG: pol:Bpro_1097 hypothetical protein; hypothetical protein 3599895 4688982 Pnap_3394 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983612.1 3599299 R 365044 CDS YP_983613.1 121606284 4687713 3600126..3601553 1 NC_008781.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1096 UDP-N-acetylmuramate; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 3601553 4687713 Pnap_3395 Polaromonas naphthalenivorans CJ2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_983613.1 3600126 D 365044 CDS YP_983614.1 121606285 4686490 complement(3601660..3602862) 1 NC_008781.1 KEGG: psb:Psyr_0912 DnaJ domain protein; DnaJ domain-containing protein 3602862 4686490 Pnap_3396 Polaromonas naphthalenivorans CJ2 DnaJ domain-containing protein YP_983614.1 3601660 R 365044 CDS YP_983615.1 121606286 4688731 complement(3602996..3603307) 1 NC_008781.1 KEGG: pol:Bpro_1095 hypothetical protein; hypothetical protein 3603307 4688731 Pnap_3397 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983615.1 3602996 R 365044 CDS YP_983616.1 121606287 4686280 complement(3603412..3604533) 1 NC_008781.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3604533 4686280 Pnap_3398 Polaromonas naphthalenivorans CJ2 phospho-2-dehydro-3-deoxyheptonate aldolase YP_983616.1 3603412 R 365044 CDS YP_983617.1 121606288 4689577 complement(3604781..3606307) 1 NC_008781.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: pol:Bpro_1093 peptidase U62, modulator of DNA gyrase; C69 family peptidase 3606307 4689577 Pnap_3399 Polaromonas naphthalenivorans CJ2 C69 family peptidase YP_983617.1 3604781 R 365044 CDS YP_983618.1 121606289 4688262 complement(3606344..3607498) 1 NC_008781.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pol:Bpro_1091 rod shape-determining protein RodA; rod shape-determining protein RodA 3607498 4688262 Pnap_3400 Polaromonas naphthalenivorans CJ2 rod shape-determining protein RodA YP_983618.1 3606344 R 365044 CDS YP_983619.1 121606290 4686877 3607693..3608277 1 NC_008781.1 PFAM: protein of unknown function UPF0227; KEGG: pol:Bpro_1090 protein of unknown function UPF0227; hypothetical protein 3608277 4686877 Pnap_3401 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983619.1 3607693 D 365044 CDS YP_983620.1 121606291 4686706 3608525..3609292 1 NC_008781.1 PFAM: putative transposase, IS891/IS1136/IS1341 family; KEGG: noc:Noc_1587 transposase; IS891/IS1136/IS1341 family transposase 3609292 4686706 Pnap_3402 Polaromonas naphthalenivorans CJ2 IS891/IS1136/IS1341 family transposase YP_983620.1 3608525 D 365044 CDS YP_983621.1 121606292 4686730 3609328..3610386 1 NC_008781.1 PFAM: transposase, IS4 family protein; KEGG: lpf:lpl2868 hypothetical protein; transposase, IS4 family protein 3610386 4686730 Pnap_3403 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_983621.1 3609328 D 365044 CDS YP_983622.1 121606293 4686789 3610407..3610697 1 NC_008781.1 PFAM: transposase, IS605 OrfB; KEGG: noc:Noc_1587 transposase; transposase, IS605 OrfB 3610697 4686789 Pnap_3404 Polaromonas naphthalenivorans CJ2 transposase, IS605 OrfB YP_983622.1 3610407 D 365044 CDS YP_983623.1 121606294 4686809 3610727..3612850 1 NC_008781.1 PFAM: ribonuclease II; KEGG: pol:Bpro_1089 ribonuclease II; ribonuclease II 3612850 4686809 Pnap_3405 Polaromonas naphthalenivorans CJ2 ribonuclease II YP_983623.1 3610727 D 365044 CDS YP_983624.1 121606295 4686900 3612874..3613788 1 NC_008781.1 TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like; TonB family protein 3613788 4686900 Pnap_3406 Polaromonas naphthalenivorans CJ2 TonB family protein YP_983624.1 3612874 D 365044 CDS YP_983625.1 121606296 4686945 3613839..3614699 1 NC_008781.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3614699 aroE 4686945 aroE Polaromonas naphthalenivorans CJ2 shikimate 5-dehydrogenase YP_983625.1 3613839 D 365044 CDS YP_983626.1 121606297 4687529 3614696..3615445 1 NC_008781.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51; KEGG: pol:Bpro_1086 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase 3615445 4687529 Pnap_3408 Polaromonas naphthalenivorans CJ2 monofunctional biosynthetic peptidoglycan transglycosylase YP_983626.1 3614696 D 365044 CDS YP_983627.1 121606298 4687553 3615531..3616079 1 NC_008781.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3616079 ruvC 4687553 ruvC Polaromonas naphthalenivorans CJ2 Holliday junction resolvase YP_983627.1 3615531 D 365044 CDS YP_983628.1 121606299 4687610 complement(3616093..3616269) 1 NC_008781.1 KEGG: pol:Bpro_1082 hypothetical protein; hypothetical protein 3616269 4687610 Pnap_3410 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983628.1 3616093 R 365044 CDS YP_983629.1 121606300 4688267 complement(3616303..3617226) 1 NC_008781.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3617226 lpxC 4688267 lpxC Polaromonas naphthalenivorans CJ2 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_983629.1 3616303 R 365044 CDS YP_983630.1 121606301 4688318 complement(3617374..3618558) 1 NC_008781.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: pol:Bpro_1080 cell division protein FtsZ; cell division protein FtsZ 3618558 4688318 Pnap_3412 Polaromonas naphthalenivorans CJ2 cell division protein FtsZ YP_983630.1 3617374 R 365044 CDS YP_983631.1 121606302 4686278 complement(3618700..3619929) 1 NC_008781.1 PFAM: cell division protein FtsA; KEGG: pol:Bpro_1079 cell division protein FtsA; cell division protein FtsA 3619929 4686278 Pnap_3413 Polaromonas naphthalenivorans CJ2 cell division protein FtsA YP_983631.1 3618700 R 365044 CDS YP_983632.1 121606303 4688567 complement(3619934..3620725) 1 NC_008781.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: pol:Bpro_1078 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein 3620725 4688567 Pnap_3414 Polaromonas naphthalenivorans CJ2 polypeptide-transport-associated domain-containing protein YP_983632.1 3619934 R 365044 CDS YP_983633.1 121606304 4688839 complement(3620734..3621711) 1 NC_008781.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 3621711 ddl 4688839 ddl Polaromonas naphthalenivorans CJ2 D-alanine--D-alanine ligase YP_983633.1 3620734 R 365044 CDS YP_983634.1 121606305 4688998 complement(3621708..3623144) 1 NC_008781.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3623144 murC 4688998 murC Polaromonas naphthalenivorans CJ2 UDP-N-acetylmuramate--L-alanine ligase YP_983634.1 3621708 R 365044 CDS YP_983635.1 121606306 4689673 complement(3623141..3624223) 1 NC_008781.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 3624223 murG 4689673 murG Polaromonas naphthalenivorans CJ2 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_983635.1 3623141 R 365044 CDS YP_983636.1 121606307 4689130 complement(3624220..3625485) 1 NC_008781.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: pol:Bpro_1074 cell cycle protein; cell division protein FtsW 3625485 4689130 Pnap_3418 Polaromonas naphthalenivorans CJ2 cell division protein FtsW YP_983636.1 3624220 R 365044 CDS YP_983637.1 121606308 4689472 complement(3625482..3626993) 1 NC_008781.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_3427 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 3626993 4689472 Pnap_3419 Polaromonas naphthalenivorans CJ2 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_983637.1 3625482 R 365044 CDS YP_983638.1 121606309 4689869 complement(3626990..3628168) 1 NC_008781.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 3628168 mraY 4689869 mraY Polaromonas naphthalenivorans CJ2 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_983638.1 3626990 R 365044 CDS YP_983639.1 121606310 4690185 complement(3628158..3629558) 1 NC_008781.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1071 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 3629558 4690185 Pnap_3421 Polaromonas naphthalenivorans CJ2 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_983639.1 3628158 R 365044 CDS YP_983640.1 121606311 4690049 complement(3629555..3631045) 1 NC_008781.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 3631045 murE 4690049 murE Polaromonas naphthalenivorans CJ2 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_983640.1 3629555 R 365044 CDS YP_983641.1 121606312 4689295 complement(3631051..3632787) 1 NC_008781.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_1069 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 3632787 4689295 Pnap_3423 Polaromonas naphthalenivorans CJ2 peptidoglycan glycosyltransferase YP_983641.1 3631051 R 365044 CDS YP_983642.1 121606313 4689642 complement(3632784..3633092) 1 NC_008781.1 PFAM: cell division protein FtsL; KEGG: pol:Bpro_1068 cell division protein, FtsL -like; cell division protein FtsL 3633092 4689642 Pnap_3424 Polaromonas naphthalenivorans CJ2 cell division protein FtsL YP_983642.1 3632784 R 365044 CDS YP_983643.1 121606314 4689596 complement(3633157..3634077) 1 NC_008781.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pol:Bpro_1067 methyltransferase; S-adenosyl-methyltransferase MraW 3634077 mraW 4689596 mraW Polaromonas naphthalenivorans CJ2 S-adenosyl-methyltransferase MraW YP_983643.1 3633157 R 365044 CDS YP_983644.1 121606315 4689277 complement(3634084..3634536) 1 NC_008781.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 3634536 4689277 Pnap_3426 Polaromonas naphthalenivorans CJ2 cell division protein MraZ YP_983644.1 3634084 R 365044 CDS YP_983645.1 121606316 4689532 complement(3635118..3636920) 1 NC_008781.1 KEGG: pol:Bpro_1065 hypothetical protein; hypothetical protein 3636920 4689532 Pnap_3427 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983645.1 3635118 R 365044 CDS YP_983646.1 121606317 4689247 complement(3636957..3637793) 1 NC_008781.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: pol:Bpro_1064 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 3637793 4689247 Pnap_3428 Polaromonas naphthalenivorans CJ2 TraR/DksA family transcriptional regulator YP_983646.1 3636957 R 365044 CDS YP_983647.1 121606318 4689235 complement(3638066..3639118) 1 NC_008781.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: pol:Bpro_1063 cobalamin synthesis protein, P47K; cobalamin synthesis protein, P47K 3639118 4689235 Pnap_3429 Polaromonas naphthalenivorans CJ2 cobalamin synthesis protein, P47K YP_983647.1 3638066 R 365044 CDS YP_983648.1 121606319 4689227 complement(3639268..3639594) 1 NC_008781.1 hypothetical protein 3639594 4689227 Pnap_3430 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983648.1 3639268 R 365044 CDS YP_983649.1 121606320 4689195 3639774..3641252 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: pol:Bpro_2661 transcriptional regulator, GntR family; GntR family transcriptional regulator 3641252 4689195 Pnap_3431 Polaromonas naphthalenivorans CJ2 GntR family transcriptional regulator YP_983649.1 3639774 D 365044 CDS YP_983650.1 121606321 4689416 complement(3641276..3642460) 1 NC_008781.1 SMART: PUA domain containing protein; KEGG: pol:Bpro_1062 putative SAM-dependent methyltransferase; PUA domain-containing protein 3642460 4689416 Pnap_3432 Polaromonas naphthalenivorans CJ2 PUA domain-containing protein YP_983650.1 3641276 R 365044 CDS YP_983651.1 121606322 4689170 complement(3642518..3643555) 1 NC_008781.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pol:Bpro_1060 phage integrase; phage integrase family protein 3643555 4689170 Pnap_3433 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_983651.1 3642518 R 365044 CDS YP_983652.1 121606323 4689138 complement(3643555..3644268) 1 NC_008781.1 PFAM: protein of unknown function DUF484; KEGG: pol:Bpro_1059 hypothetical protein; hypothetical protein 3644268 4689138 Pnap_3434 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983652.1 3643555 R 365044 CDS YP_983653.1 121606324 4689145 complement(3644328..3645215) 1 NC_008781.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 3645215 dapF 4689145 dapF Polaromonas naphthalenivorans CJ2 diaminopimelate epimerase YP_983653.1 3644328 R 365044 CDS YP_983654.1 121606325 4689152 complement(3645300..3646241) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0844 transcriptional regulator, LysR family; LysR family transcriptional regulator 3646241 4689152 Pnap_3436 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_983654.1 3645300 R 365044 CDS YP_983655.1 121606326 4688652 3646347..3647279 1 NC_008781.1 PFAM: dihydrodipicolinate synthetase; KEGG: mta:Moth_0631 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 3647279 4688652 Pnap_3437 Polaromonas naphthalenivorans CJ2 dihydrodipicolinate synthetase YP_983655.1 3646347 D 365044 CDS YP_983656.1 121606327 4688683 3647308..3648288 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4389 uncharacterized protein UPF0065; hypothetical protein 3648288 4688683 Pnap_3438 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983656.1 3647308 D 365044 CDS YP_983657.1 121606328 4688642 3648278..3648985 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: eca:ECA3767 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3648985 4688642 Pnap_3439 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_983657.1 3648278 D 365044 CDS YP_983658.1 121606329 4688841 3649010..3650176 1 NC_008781.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rfr:Rfer_0843 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 3650176 4688841 Pnap_3440 Polaromonas naphthalenivorans CJ2 mandelate racemase/muconate lactonizing protein YP_983658.1 3649010 D 365044 CDS YP_983659.1 121606330 4688796 3650287..3651921 1 NC_008781.1 PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: pol:Bpro_1055 beta-lactamase-like; beta-lactamase domain-containing protein 3651921 4688796 Pnap_3441 Polaromonas naphthalenivorans CJ2 beta-lactamase domain-containing protein YP_983659.1 3650287 D 365044 CDS YP_983660.1 121606331 4688533 3652048..3652905 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: pol:Bpro_1050 extracellular solute-binding protein, family 3; extracellular solute-binding protein 3652905 4688533 Pnap_3442 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_983660.1 3652048 D 365044 CDS YP_983661.1 121606332 4688433 complement(3652911..3653807) 1 NC_008781.1 PFAM: regulatory protein, LysR; KEGG: rfr:Rfer_3458 transcriptional regulator, LysR family; LysR family transcriptional regulator 3653807 4688433 Pnap_3443 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_983661.1 3652911 R 365044 CDS YP_983662.1 121606333 4688570 3653971..3654510 1 NC_008781.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rfr:Rfer_3459 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 3654510 4688570 Pnap_3444 Polaromonas naphthalenivorans CJ2 BadM/Rrf2 family transcriptional regulator YP_983662.1 3653971 D 365044 CDS YP_983663.1 121606334 4689399 3654925..3655842 1 NC_008781.1 KEGG: rfr:Rfer_3460 cysteine synthases; TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase A 3655842 4689399 Pnap_3445 Polaromonas naphthalenivorans CJ2 cysteine synthase A YP_983663.1 3654925 D 365044 CDS YP_983664.1 121606335 4688585 3655894..3657630 1 NC_008781.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_1049 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3657630 4688585 Pnap_3446 Polaromonas naphthalenivorans CJ2 FAD dependent oxidoreductase YP_983664.1 3655894 D 365044 CDS YP_983665.1 121606336 4688574 3657765..3658604 1 NC_008781.1 KEGG: pol:Bpro_1033 hypothetical protein; hypothetical protein 3658604 4688574 Pnap_3447 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983665.1 3657765 D 365044 CDS YP_983666.1 121606337 4688579 complement(3658760..3659635) 1 NC_008781.1 putative metalloprotease; heat shock protein HtpX 3659635 4688579 Pnap_3448 Polaromonas naphthalenivorans CJ2 heat shock protein HtpX YP_983666.1 3658760 R 365044 CDS YP_983667.1 121606338 4688576 complement(3659810..3660484) 1 NC_008781.1 KEGG: pol:Bpro_1031 putative transmembrane protein; hypothetical protein 3660484 4688576 Pnap_3449 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983667.1 3659810 R 365044 CDS YP_983668.1 121606339 4687766 complement(3660553..3661680) 1 NC_008781.1 KEGG: pol:Bpro_4967 hypothetical protein; hypothetical protein 3661680 4687766 Pnap_3450 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983668.1 3660553 R 365044 CDS YP_983669.1 121606340 4688175 complement(3661677..3662744) 1 NC_008781.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3662744 4688175 Pnap_3451 Polaromonas naphthalenivorans CJ2 dihydroorotase YP_983669.1 3661677 R 365044 CDS YP_983670.1 121606341 4688020 3662871..3663410 1 NC_008781.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rme:Rmet_1148 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 3663410 4688020 Pnap_3452 Polaromonas naphthalenivorans CJ2 tripartite ATP-independent periplasmic transporter DctQ YP_983670.1 3662871 D 365044 CDS YP_983671.1 121606342 4687716 3663407..3664705 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbr:BB2309 putative membrane permease; TRAP dicarboxylate transporter subunit DctM 3664705 4687716 Pnap_3453 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctM YP_983671.1 3663407 D 365044 CDS YP_983672.1 121606343 4687715 3664741..3665769 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rme:Rmet_1150 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 3665769 4687715 Pnap_3454 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctP YP_983672.1 3664741 D 365044 CDS YP_983673.1 121606344 4687457 complement(3665835..3666572) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3901 ABC transporter related; ABC transporter-like protein 3666572 4687457 Pnap_3455 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983673.1 3665835 R 365044 CDS YP_983674.1 121606345 4687481 complement(3666630..3667298) 1 NC_008781.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3902 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3667298 4687481 Pnap_3456 Polaromonas naphthalenivorans CJ2 polar amino acid ABC transporter inner membrane subunit YP_983674.1 3666630 R 365044 CDS YP_983675.1 121606346 4687370 complement(3667300..3667965) 1 NC_008781.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3903 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3667965 4687370 Pnap_3457 Polaromonas naphthalenivorans CJ2 polar amino acid ABC transporter inner membrane subunit YP_983675.1 3667300 R 365044 CDS YP_983676.1 121606347 4687112 complement(3668131..3669030) 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_3904 extracellular solute-binding protein, family 3; extracellular solute-binding protein 3669030 4687112 Pnap_3458 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_983676.1 3668131 R 365044 CDS YP_983677.1 121606348 4687108 complement(3669472..3670449) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3905 transcriptional regulator, LysR family; LysR family transcriptional regulator 3670449 4687108 Pnap_3459 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_983677.1 3669472 R 365044 CDS YP_983678.1 121606349 4687125 complement(3670569..3672434) 1 NC_008781.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3906 ABC transporter related; ABC transporter-like protein 3672434 4687125 Pnap_3460 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983678.1 3670569 R 365044 CDS YP_983679.1 121606350 4687113 3672511..3672897 1 NC_008781.1 PFAM: regulatory protein, MerR; KEGG: pfu:PF1985 hypothetical protein; regulatory protein MerR 3672897 4687113 Pnap_3461 Polaromonas naphthalenivorans CJ2 regulatory protein MerR YP_983679.1 3672511 D 365044 CDS YP_983680.1 121606351 4687149 3672894..3674261 1 NC_008781.1 hypothetical protein 3674261 4687149 Pnap_3462 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983680.1 3672894 D 365044 CDS YP_983681.1 121606352 4686668 3674299..3674766 1 NC_008781.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3907 thioesterase superfamily; thioesterase superfamily protein 3674766 4686668 Pnap_3463 Polaromonas naphthalenivorans CJ2 thioesterase superfamily protein YP_983681.1 3674299 D 365044 CDS YP_983682.1 121606353 4687157 3674875..3675405 1 NC_008781.1 PFAM: MgtC/SapB transporter; KEGG: pfo:Pfl_2532 MgtC/SapB transporter; MgtC/SapB transporter 3675405 4687157 Pnap_3464 Polaromonas naphthalenivorans CJ2 MgtC/SapB transporter YP_983682.1 3674875 D 365044 CDS YP_983683.1 121606354 4686240 complement(3675439..3675882) 1 NC_008781.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pol:Bpro_3909 hemerythrin HHE cation binding region; hemerythrin HHE cation-binding domain-containing protein 3675882 4686240 Pnap_3465 Polaromonas naphthalenivorans CJ2 hemerythrin HHE cation-binding domain-containing protein YP_983683.1 3675439 R 365044 CDS YP_983684.1 121606355 4686215 3676083..3677039 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: pol:Bpro_3910 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3677039 4686215 Pnap_3466 Polaromonas naphthalenivorans CJ2 NAD-dependent epimerase/dehydratase YP_983684.1 3676083 D 365044 CDS YP_983685.1 121606356 4686152 3677079..3677774 1 NC_008781.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_3912 protein of unknown function DUF1099; glutathione S-transferase domain-containing protein 3677774 4686152 Pnap_3467 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_983685.1 3677079 D 365044 CDS YP_983686.1 121606357 4686501 3677771..3679045 1 NC_008781.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: pol:Bpro_3914 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3679045 4686501 Pnap_3468 Polaromonas naphthalenivorans CJ2 metal dependent phosphohydrolase YP_983686.1 3677771 D 365044 CDS YP_983687.1 121606358 4686471 complement(3679050..3679616) 1 NC_008781.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3919 phenylacetic acid degradation-related protein; hypothetical protein 3679616 4686471 Pnap_3469 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983687.1 3679050 R 365044 CDS YP_983688.1 121606359 4686412 complement(3679661..3680185) 1 NC_008781.1 TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin; phasin family protein 3680185 4686412 Pnap_3470 Polaromonas naphthalenivorans CJ2 phasin family protein YP_983688.1 3679661 R 365044 CDS YP_983689.1 121606360 4686359 3680429..3681844 1 NC_008781.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: tcx:Tcr_0934 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 3681844 4686359 Pnap_3471 Polaromonas naphthalenivorans CJ2 phospholipase D/transphosphatidylase YP_983689.1 3680429 D 365044 CDS YP_983690.1 121606361 4686263 3682073..3683731 1 NC_008781.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dar:Daro_1762 L-lactate permease; L-lactate transport 3683731 4686263 Pnap_3472 Polaromonas naphthalenivorans CJ2 L-lactate transport YP_983690.1 3682073 D 365044 CDS YP_983691.1 121606362 4687132 complement(3683922..3684707) 1 NC_008781.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3684707 4687132 Pnap_3473 Polaromonas naphthalenivorans CJ2 enoyl-CoA hydratase YP_983691.1 3683922 R 365044 CDS YP_983692.1 121606363 4687484 complement(3684748..3685947) 1 NC_008781.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3685947 4687484 Pnap_3474 Polaromonas naphthalenivorans CJ2 acetyl-CoA acetyltransferase YP_983692.1 3684748 R 365044 CDS YP_983693.1 121606364 4688613 complement(3685970..3686491) 1 NC_008781.1 KEGG: pol:Bpro_3955 hypothetical protein; hypothetical protein 3686491 4688613 Pnap_3475 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983693.1 3685970 R 365044 CDS YP_983694.1 121606365 4689156 complement(3686493..3688925) 1 NC_008781.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_3956 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 3688925 4689156 Pnap_3476 Polaromonas naphthalenivorans CJ2 3-hydroxyacyl-CoA dehydrogenase YP_983694.1 3686493 R 365044 CDS YP_983695.1 121606366 4689687 complement(3688965..3690761) 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3957 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3690761 4689687 Pnap_3477 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_983695.1 3688965 R 365044 CDS YP_983696.1 121606367 4688405 complement(3690787..3691530) 1 NC_008781.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_3958 transcriptional regulator, TetR family; TetR family transcriptional regulator 3691530 4688405 Pnap_3478 Polaromonas naphthalenivorans CJ2 TetR family transcriptional regulator YP_983696.1 3690787 R 365044 CDS YP_983697.1 121606368 4687540 complement(3691760..3692680) 1 NC_008781.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 3692680 4687540 Pnap_3479 Polaromonas naphthalenivorans CJ2 acetylglutamate kinase YP_983697.1 3691760 R 365044 CDS YP_983698.1 121606369 4688555 complement(3692830..3694797) 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rme:Rmet_2723 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 3694797 4688555 Pnap_3480 Polaromonas naphthalenivorans CJ2 polysaccharide biosynthesis protein CapD YP_983698.1 3692830 R 365044 CDS YP_983699.1 121606370 4688754 complement(3694929..3695489) 1 NC_008781.1 PFAM: sugar transferase; KEGG: rfr:Rfer_1263 sugar transferase; sugar transferase 3695489 4688754 Pnap_3481 Polaromonas naphthalenivorans CJ2 sugar transferase YP_983699.1 3694929 R 365044 CDS YP_983700.1 121606371 4688551 complement(3695486..3696433) 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3696433 4688551 Pnap_3482 Polaromonas naphthalenivorans CJ2 NAD-dependent epimerase/dehydratase YP_983700.1 3695486 R 365044 CDS YP_983701.1 121606372 4687727 complement(3696603..3697760) 1 NC_008781.1 PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_2727 glycosyl transferase, group 1; group 1 glycosyl transferase 3697760 4687727 Pnap_3483 Polaromonas naphthalenivorans CJ2 group 1 glycosyl transferase YP_983701.1 3696603 R 365044 CDS YP_983702.1 121606373 4688558 complement(3697865..3698845) 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: noc:Noc_2167 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3698845 4688558 Pnap_3484 Polaromonas naphthalenivorans CJ2 NAD-dependent epimerase/dehydratase YP_983702.1 3697865 R 365044 CDS YP_983703.1 121606374 4688593 complement(3698864..3699796) 1 NC_008781.1 PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2174 glycosyl transferase, family 2; glycosyl transferase family protein 3699796 4688593 Pnap_3485 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_983703.1 3698864 R 365044 CDS YP_983704.1 121606375 4689023 complement(3699798..3701060) 1 NC_008781.1 KEGG: gme:Gmet_2175 hypothetical protein; hypothetical protein 3701060 4689023 Pnap_3486 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983704.1 3699798 R 365044 CDS YP_983705.1 121606376 4688617 complement(3701180..3702454) 1 NC_008781.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: dar:Daro_1271 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3702454 4688617 Pnap_3487 Polaromonas naphthalenivorans CJ2 polysaccharide biosynthesis protein YP_983705.1 3701180 R 365044 CDS YP_983706.1 121606377 4689141 complement(3702465..3703010) 1 NC_008781.1 KEGG: eba:ebA2275 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 3703010 4689141 Pnap_3488 Polaromonas naphthalenivorans CJ2 dTDP-4-dehydrorhamnose 3,5-epimerase YP_983706.1 3702465 R 365044 CDS YP_983707.1 121606378 4689150 complement(3703007..3703894) 1 NC_008781.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4018 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 3703894 4689150 Pnap_3489 Polaromonas naphthalenivorans CJ2 glucose-1-phosphate thymidylyltransferase YP_983707.1 3703007 R 365044 CDS YP_983708.1 121606379 4688838 complement(3703919..3704809) 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 3704809 4688838 Pnap_3490 Polaromonas naphthalenivorans CJ2 dTDP-4-dehydrorhamnose reductase YP_983708.1 3703919 R 365044 CDS YP_983709.1 121606380 4688559 complement(3704806..3705870) 1 NC_008781.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4022 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 3705870 4688559 Pnap_3491 Polaromonas naphthalenivorans CJ2 dTDP-glucose 4,6-dehydratase YP_983709.1 3704806 R 365044 CDS YP_983710.1 121606381 4688840 complement(3705956..3706807) 1 NC_008781.1 PFAM: lipopolysaccharide biosynthesis; KEGG: rfr:Rfer_1234 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein 3706807 4688840 Pnap_3492 Polaromonas naphthalenivorans CJ2 lipopolysaccharide biosynthesis protein YP_983710.1 3705956 R 365044 CDS YP_983711.1 121606382 4688649 3707218..3707559 1 NC_008781.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rme:Rmet_3677 histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 3707559 4688649 Pnap_3493 Polaromonas naphthalenivorans CJ2 histone family protein nucleoid-structuring protein H-NS YP_983711.1 3707218 D 365044 CDS YP_983712.1 121606383 4688673 complement(3707607..3709601) 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KR; KEGG: pol:Bpro_4023 male sterility-like; short chain dehydrogenase 3709601 4688673 Pnap_3494 Polaromonas naphthalenivorans CJ2 short chain dehydrogenase YP_983712.1 3707607 R 365044 CDS YP_983713.1 121606384 4688742 3709834..3710418 1 NC_008781.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated; poly(hydroxyalkanoate) granule-associated protein 3710418 4688742 Pnap_3495 Polaromonas naphthalenivorans CJ2 poly(hydroxyalkanoate) granule-associated protein YP_983713.1 3709834 D 365044 CDS YP_983714.1 121606385 4688569 3710603..3711274 1 NC_008781.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4025 transcriptional regulator, TetR family; TetR family transcriptional regulator 3711274 4688569 Pnap_3496 Polaromonas naphthalenivorans CJ2 TetR family transcriptional regulator YP_983714.1 3710603 D 365044 CDS YP_983715.1 121606386 4688856 3711299..3712105 1 NC_008781.1 KEGG: pol:Bpro_4026 hypothetical protein; hypothetical protein 3712105 4688856 Pnap_3497 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983715.1 3711299 D 365044 CDS YP_983716.1 121606387 4688582 complement(3712198..3713748) 1 NC_008781.1 PFAM: glycosyl transferase, family 39; KEGG: pol:Bpro_4028 glycosyl transferase, family 39; glycosyl transferase family protein 3713748 4688582 Pnap_3498 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_983716.1 3712198 R 365044 CDS YP_983717.1 121606388 4689154 complement(3713851..3714810) 1 NC_008781.1 PFAM: conserved hypothetical protein 374; KEGG: pol:Bpro_4029 conserved hypothetical protein 374; hypothetical protein 3714810 4689154 Pnap_3499 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983717.1 3713851 R 365044 CDS YP_983718.1 121606389 4688952 complement(3714807..3715718) 1 NC_008781.1 PFAM: UbiA prenyltransferase; KEGG: pol:Bpro_4030 UbiA prenyltransferase; UbiA prenyltransferase 3715718 4688952 Pnap_3500 Polaromonas naphthalenivorans CJ2 UbiA prenyltransferase YP_983718.1 3714807 R 365044 CDS YP_983719.1 121606390 4689147 3715798..3716922 1 NC_008781.1 KEGG: pol:Bpro_4033 putative zinc protease protein; putative zinc protease 3716922 4689147 Pnap_3501 Polaromonas naphthalenivorans CJ2 putative zinc protease YP_983719.1 3715798 D 365044 CDS YP_983720.1 121606391 4687838 complement(3716927..3719350) 1 NC_008781.1 KEGG: pol:Bpro_4197 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 3719350 4687838 Pnap_3502 Polaromonas naphthalenivorans CJ2 multi-sensor signal transduction histidine kinase YP_983720.1 3716927 R 365044 CDS YP_983721.1 121606392 4687973 3719646..3719978 1 NC_008781.1 TIGRFAM: putative polyhydroxyalkanoic acid system protein; KEGG: rfr:Rfer_3533 hypothetical protein; putative polyhydroxyalkanoic acid system protein 3719978 4687973 Pnap_3503 Polaromonas naphthalenivorans CJ2 putative polyhydroxyalkanoic acid system protein YP_983721.1 3719646 D 365044 CDS YP_983722.1 121606393 4688584 3719998..3720933 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4035 transcriptional regulator, LysR family; LysR family transcriptional regulator 3720933 4688584 Pnap_3504 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_983722.1 3719998 D 365044 CDS YP_983723.1 121606394 4688167 3720967..3722202 1 NC_008781.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4036 L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 3722202 4688167 Pnap_3505 Polaromonas naphthalenivorans CJ2 formyl-CoA transferase YP_983723.1 3720967 D 365044 CDS YP_983724.1 121606395 4688718 3722199..3723146 1 NC_008781.1 PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4037 pyruvate carboxyltransferase; pyruvate carboxyltransferase 3723146 4688718 Pnap_3506 Polaromonas naphthalenivorans CJ2 pyruvate carboxyltransferase YP_983724.1 3722199 D 365044 CDS YP_983725.1 121606396 4687719 3723143..3723535 1 NC_008781.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_4038 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3723535 4687719 Pnap_3507 Polaromonas naphthalenivorans CJ2 glyoxalase/bleomycin resistance protein/dioxygenase YP_983725.1 3723143 D 365044 CDS YP_983726.1 121606397 4688013 3723566..3724540 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4039 uncharacterized protein UPF0065; hypothetical protein 3724540 4688013 Pnap_3508 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983726.1 3723566 D 365044 CDS YP_983727.1 121606398 4687755 complement(3724629..3724883) 1 NC_008781.1 PFAM: acyl-coA-binding protein, ACBP; KEGG: pol:Bpro_4041 acyl-coA-binding protein, ACBP; acyl-CoA-binding protein 3724883 4687755 Pnap_3509 Polaromonas naphthalenivorans CJ2 acyl-CoA-binding protein YP_983727.1 3724629 R 365044 CDS YP_983728.1 121606399 4689142 3725024..3726592 1 NC_008781.1 PFAM: protein of unknown function UPF0089; KEGG: pol:Bpro_4042 protein of unknown function UPF0089; hypothetical protein 3726592 4689142 Pnap_3510 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983728.1 3725024 D 365044 CDS YP_983729.1 121606400 4688039 complement(3726664..3727431) 1 NC_008781.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 3727431 4688039 Pnap_3511 Polaromonas naphthalenivorans CJ2 pantothenate kinase YP_983729.1 3726664 R 365044 CDS YP_983730.1 121606401 4687879 complement(3727528..3728196) 1 NC_008781.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4045 transcriptional regulator, LuxR family; regulatory protein LuxR 3728196 4687879 Pnap_3512 Polaromonas naphthalenivorans CJ2 regulatory protein LuxR YP_983730.1 3727528 R 365044 CDS YP_983731.1 121606402 4689393 3728283..3729560 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: pol:Bpro_4046 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3729560 4689393 Pnap_3513 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_983731.1 3728283 D 365044 CDS YP_983732.1 121606403 4689443 3729570..3730598 1 NC_008781.1 KEGG: pol:Bpro_4047 response regulator receiver domain protein (CheY-like); response regulator receiver protein 3730598 4689443 Pnap_3514 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_983732.1 3729570 D 365044 CDS YP_983733.1 121606404 4689172 complement(3730601..3731848) 1 NC_008781.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_4048 glycine C-acetyltransferase; hypothetical protein 3731848 4689172 Pnap_3515 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983733.1 3730601 R 365044 CDS YP_983734.1 121606405 4687944 complement(3731994..3732434) 1 NC_008781.1 SMART: Rhodanese domain protein; KEGG: pol:Bpro_4049 rhodanese-like; rhodanese domain-containing protein 3732434 4687944 Pnap_3516 Polaromonas naphthalenivorans CJ2 rhodanese domain-containing protein YP_983734.1 3731994 R 365044 CDS YP_983735.1 121606406 4687497 3732622..3733533 1 NC_008781.1 PFAM: protein of unknown function DUF344; KEGG: pol:Bpro_4050 protein of unknown function DUF344; hypothetical protein 3733533 4687497 Pnap_3517 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983735.1 3732622 D 365044 CDS YP_983736.1 121606407 4687360 complement(3733659..3734381) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3709 ABC branched chain amino acid family transporter, ATPase subunit; ABC transporter-like protein 3734381 4687360 Pnap_3518 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983736.1 3733659 R 365044 CDS YP_983737.1 121606408 4689478 complement(3734397..3736328) 1 NC_008781.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A3708 ABC branched chain amino acid family transporter, fused ATPase and inner membrane subunit; ABC transporter-like protein 3736328 4689478 Pnap_3519 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983737.1 3734397 R 365044 CDS YP_983738.1 121606409 4687455 complement(3736332..3737207) 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A3707 ABC branched chain amino acid family transporter, inner membrane subunit; inner-membrane translocator 3737207 4687455 Pnap_3520 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_983738.1 3736332 R 365044 CDS YP_983739.1 121606410 4686210 complement(3737294..3738496) 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A3706 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; extracellular ligand-binding receptor 3738496 4686210 Pnap_3521 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_983739.1 3737294 R 365044 CDS YP_983740.1 121606411 4687463 3738758..3740191 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; Cache, type 2 domain protein; KEGG: rso:RSc0021 probable transmembrane sensor histidine kinase transcription regulator protein; integral membrane sensor signal transduction histidine kinase 3740191 4687463 Pnap_3522 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_983740.1 3738758 D 365044 CDS YP_983741.1 121606412 4686056 3740157..3740831 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bcn:Bcen_5187 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3740831 4686056 Pnap_3523 Polaromonas naphthalenivorans CJ2 two component LuxR family transcriptional regulator YP_983741.1 3740157 D 365044 CDS YP_983742.1 121606413 4686346 3741055..3744348 1 NC_008781.1 KEGG: pol:Bpro_4054 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit 3744348 4686346 Pnap_3524 Polaromonas naphthalenivorans CJ2 methylmalonyl-CoA mutase large subunit YP_983742.1 3741055 D 365044 CDS YP_983743.1 121606414 4686382 complement(3744469..3744630) 1 NC_008781.1 KEGG: rfr:Rfer_0521 hypothetical protein; hypothetical protein 3744630 4686382 Pnap_3525 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983743.1 3744469 R 365044 CDS YP_983744.1 121606415 4690107 complement(3744722..3745837) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4232 uncharacterized protein UPF0065; hypothetical protein 3745837 4690107 Pnap_3526 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983744.1 3744722 R 365044 CDS YP_983745.1 121606416 4689629 3746028..3746801 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4075 ABC transporter related; ABC transporter-like protein 3746801 4689629 Pnap_3527 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983745.1 3746028 D 365044 CDS YP_983746.1 121606417 4688100 3746804..3747508 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4076 ABC transporter related; ABC transporter-like protein 3747508 4688100 Pnap_3528 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983746.1 3746804 D 365044 CDS YP_983747.1 121606418 4688055 3747586..3748779 1 NC_008781.1 KEGG: rfr:Rfer_1077 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3748779 4688055 Pnap_3529 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_983747.1 3747586 D 365044 CDS YP_983748.1 121606419 4688762 3748864..3749748 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_4078 inner-membrane translocator; inner-membrane translocator 3749748 4688762 Pnap_3530 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_983748.1 3748864 D 365044 CDS YP_983749.1 121606420 4689186 3749753..3750775 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_4079 inner-membrane translocator; inner-membrane translocator 3750775 4689186 Pnap_3531 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_983749.1 3749753 D 365044 CDS YP_983750.1 121606421 4686178 3751272..3752324 1 NC_008781.1 PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type; porin 3752324 4686178 Pnap_3532 Polaromonas naphthalenivorans CJ2 porin YP_983750.1 3751272 D 365044 CDS YP_983751.1 121606422 4688660 complement(3752502..3753269) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4072 ABC transporter ATP-binding protein; ABC transporter-like protein 3753269 4688660 Pnap_3533 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983751.1 3752502 R 365044 CDS YP_983752.1 121606423 4687905 complement(3753282..3754169) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA4073 ABC transporter ATP binding protein; ABC transporter-like protein 3754169 4687905 Pnap_3534 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983752.1 3753282 R 365044 CDS YP_983753.1 121606424 4687327 complement(3754181..3755083) 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dipeptide ABC transporter, permease protein DppC, putative; binding-protein-dependent transport system inner membrane protein 3755083 4687327 Pnap_3535 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_983753.1 3754181 R 365044 CDS YP_983754.1 121606425 4687489 complement(3755080..3756147) 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA4075 ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein 3756147 4687489 Pnap_3536 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_983754.1 3755080 R 365044 CDS YP_983755.1 121606426 4689396 complement(3756188..3757858) 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 5; KEGG: eca:ECA4076 ABC transporter, substrate binding protein; extracellular solute-binding protein 3757858 4689396 Pnap_3537 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_983755.1 3756188 R 365044 CDS YP_983756.1 121606427 4686911 complement(3757843..3759045) 1 NC_008781.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: eca:ECA4077 putative mandelate racemase / muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 3759045 4686911 Pnap_3538 Polaromonas naphthalenivorans CJ2 mandelate racemase/muconate lactonizing protein YP_983756.1 3757843 R 365044 CDS YP_983757.1 121606428 4690224 3759311..3760093 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bcn:Bcen_0685 GntR-like; regulatory protein GntR 3760093 4690224 Pnap_3539 Polaromonas naphthalenivorans CJ2 regulatory protein GntR YP_983757.1 3759311 D 365044 CDS YP_983758.1 121606429 4690120 complement(3760209..3760844) 1 NC_008781.1 KEGG: pfo:Pfl_1042 hypothetical protein; hypothetical protein 3760844 4690120 Pnap_3540 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983758.1 3760209 R 365044 CDS YP_983759.1 121606430 4690215 complement(3760847..3762127) 1 NC_008781.1 KEGG: pfo:Pfl_1041 ATPase-like; ATPase-like protein 3762127 4690215 Pnap_3541 Polaromonas naphthalenivorans CJ2 ATPase-like protein YP_983759.1 3760847 R 365044 CDS YP_983760.1 121606431 4688122 complement(3762205..3763608) 1 NC_008781.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 3763608 4688122 Pnap_3542 Polaromonas naphthalenivorans CJ2 ATP-dependent RNA helicase DbpA YP_983760.1 3762205 R 365044 CDS YP_983761.1 121606432 4689976 3763736..3764557 1 NC_008781.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: bbr:BB3846 hypothetical protein; PA-phosphatase-like phosphoesterase 3764557 4689976 Pnap_3543 Polaromonas naphthalenivorans CJ2 PA-phosphatase-like phosphoesterase YP_983761.1 3763736 D 365044 CDS YP_983762.1 121606433 4686514 3764633..3766000 1 NC_008781.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: pol:Bpro_0643 pyridine nucleotide-disulphide oxidoreductase dimerisation region; pyridine nucleotide-disulfide oxidoreductase dimerisation region 3766000 4686514 Pnap_3544 Polaromonas naphthalenivorans CJ2 pyridine nucleotide-disulfide oxidoreductase dimerisation region YP_983762.1 3764633 D 365044 CDS YP_983763.1 121606434 4690212 3766053..3767573 1 NC_008781.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 3767573 4690212 Pnap_3545 Polaromonas naphthalenivorans CJ2 AMP nucleosidase YP_983763.1 3766053 D 365044 CDS YP_983764.1 121606435 4689382 3768484..3769917 1 NC_008781.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_3184 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 3769917 4689382 Pnap_3547 Polaromonas naphthalenivorans CJ2 RND efflux system outer membrane lipoprotein YP_983764.1 3768484 D 365044 CDS YP_983765.1 121606436 4689524 3769971..3771299 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3185 secretion protein HlyD; RND family efflux transporter MFP subunit 3771299 4689524 Pnap_3548 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_983765.1 3769971 D 365044 CDS YP_983766.1 121606437 4686537 3771296..3772063 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3186 ABC transporter related; ABC transporter-like protein 3772063 4686537 Pnap_3549 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983766.1 3771296 D 365044 CDS YP_983767.1 121606438 4689428 3772063..3773271 1 NC_008781.1 PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3187 protein of unknown function DUF214; hypothetical protein 3773271 4689428 Pnap_3550 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983767.1 3772063 D 365044 CDS YP_983768.1 121606439 4690056 complement(3773362..3773556) 1 NC_008781.1 hypothetical protein 3773556 4690056 Pnap_3551 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983768.1 3773362 R 365044 CDS YP_983769.1 121606440 4688705 complement(3773602..3774246) 1 NC_008781.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: tbd:Tbd_2707 hemolysin-like protein; hemolysin III family channel protein 3774246 4688705 Pnap_3552 Polaromonas naphthalenivorans CJ2 hemolysin III family channel protein YP_983769.1 3773602 R 365044 CDS YP_983770.1 121606441 4690027 3774351..3774656 1 NC_008781.1 hypothetical protein 3774656 4690027 Pnap_3553 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983770.1 3774351 D 365044 CDS YP_983771.1 121606442 4689004 3774687..3774983 1 NC_008781.1 hypothetical protein 3774983 4689004 Pnap_3554 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983771.1 3774687 D 365044 CDS YP_983772.1 121606443 4686097 3775123..3775515 1 NC_008781.1 hypothetical protein 3775515 4686097 Pnap_3555 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983772.1 3775123 D 365044 CDS YP_983773.1 121606444 4689018 3775783..3777276 1 NC_008781.1 PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_5089 transposase, IS4; transposase, IS4 family protein 3777276 4689018 Pnap_3556 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_983773.1 3775783 D 365044 CDS YP_983774.1 121606445 4688901 complement(3777739..3778959) 1 NC_008781.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 3778959 4688901 Pnap_3557 Polaromonas naphthalenivorans CJ2 6-phosphofructokinase YP_983774.1 3777739 R 365044 CDS YP_983775.1 121606446 4690131 complement(3779080..3780447) 1 NC_008781.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: plu:plu0744 hypothetical protein; filamentation induced by cAMP protein fic 3780447 4690131 Pnap_3558 Polaromonas naphthalenivorans CJ2 filamentation induced by cAMP protein fic YP_983775.1 3779080 R 365044 CDS YP_983776.1 121606447 4688686 complement(3780600..3781673) 1 NC_008781.1 KEGG: eba:ebA3407 predicted TRAP-type uncharacterized transport system protein, periplasmic component; TRAP-type transport system periplasmic protein 3781673 4688686 Pnap_3559 Polaromonas naphthalenivorans CJ2 TRAP-type transport system periplasmic protein YP_983776.1 3780600 R 365044 CDS YP_983777.1 121606448 4688910 complement(3781675..3782457) 1 NC_008781.1 SMART: zinc finger, RanBP2-type; KEGG: eba:ebA3408 hypothetical protein; CDGSH-type zinc finger protein 3782457 4688910 Pnap_3560 Polaromonas naphthalenivorans CJ2 CDGSH-type zinc finger protein YP_983777.1 3781675 R 365044 CDS YP_983778.1 121606449 4688210 3782983..3783696 1 NC_008781.1 PFAM: protein of unknown function DUF28; KEGG: pol:Bpro_2928 protein of unknown function DUF28; hypothetical protein 3783696 4688210 Pnap_3561 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983778.1 3782983 D 365044 CDS YP_983779.1 121606450 4687342 3783720..3784322 1 NC_008781.1 catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis; D-alanyl-D-alanine dipeptidase 3784322 4687342 Pnap_3562 Polaromonas naphthalenivorans CJ2 D-alanyl-D-alanine dipeptidase YP_983779.1 3783720 D 365044 CDS YP_983780.1 121606451 4686666 3784446..3785048 1 NC_008781.1 KEGG: rfr:Rfer_0376 hypothetical protein; hypothetical protein 3785048 4686666 Pnap_3563 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983780.1 3784446 D 365044 CDS YP_983781.1 121606452 4689389 3785185..3785418 1 NC_008781.1 KEGG: reu:Reut_A1356 hypothetical protein; hypothetical protein 3785418 4689389 Pnap_3564 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983781.1 3785185 D 365044 CDS YP_983782.1 121606453 4689022 3785458..3788070 1 NC_008781.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_0492 ATPase, E1-E2 type; HAD superfamily P-type ATPase 3788070 4689022 Pnap_3565 Polaromonas naphthalenivorans CJ2 HAD superfamily P-type ATPase YP_983782.1 3785458 D 365044 CDS YP_983783.1 121606454 4686738 3788204..3789949 1 NC_008781.1 PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase family protein; poly-beta-hydroxybutyrate polymerase domain-containing protein 3789949 4686738 Pnap_3566 Polaromonas naphthalenivorans CJ2 poly-beta-hydroxybutyrate polymerase domain-containing protein YP_983783.1 3788204 D 365044 CDS YP_983784.1 121606455 4690175 3790004..3790807 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA4568 putative enoyl-acyl carrier protein reductase; short-chain dehydrogenase/reductase SDR 3790807 4690175 Pnap_3567 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_983784.1 3790004 D 365044 CDS YP_983785.1 121606456 4686083 3790776..3792278 1 NC_008781.1 PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: sil:SPO0115 MaoC family protein/phosphate acetyl/butaryl transferase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase 3792278 4686083 Pnap_3568 Polaromonas naphthalenivorans CJ2 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase YP_983785.1 3790776 D 365044 CDS YP_983786.1 121606457 4688063 3792275..3793510 1 NC_008781.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: reu:Reut_A1203 acetate kinase; acetate kinase 3793510 4688063 Pnap_3569 Polaromonas naphthalenivorans CJ2 acetate kinase YP_983786.1 3792275 D 365044 CDS YP_983787.1 121606458 4690138 complement(3793633..3794739) 1 NC_008781.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_0636 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 3794739 4690138 Pnap_3570 Polaromonas naphthalenivorans CJ2 mechanosensitive ion channel protein MscS YP_983787.1 3793633 R 365044 CDS YP_983788.1 121606459 4686296 complement(3794748..3795953) 1 NC_008781.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3795953 purT 4686296 purT Polaromonas naphthalenivorans CJ2 phosphoribosylglycinamide formyltransferase 2 YP_983788.1 3794748 R 365044 CDS YP_983789.1 121606460 4686089 3796152..3796742 1 NC_008781.1 KEGG: pol:Bpro_1655 hypothetical protein; hypothetical protein 3796742 4686089 Pnap_3572 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983789.1 3796152 D 365044 CDS YP_983790.1 121606461 4690216 3796823..3797764 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0633 ABC transporter related; ABC transporter-like protein 3797764 4690216 Pnap_3573 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983790.1 3796823 D 365044 CDS YP_983791.1 121606462 4686644 3797761..3798615 1 NC_008781.1 TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0632 ABC-2 type transporter, NodJ family; ABC transporter 3798615 4686644 Pnap_3574 Polaromonas naphthalenivorans CJ2 ABC transporter YP_983791.1 3797761 D 365044 CDS YP_983792.1 121606463 4689245 3798759..3799784 1 NC_008781.1 PFAM: CheB methylesterase; KEGG: eba:ebA2148 chemotaxis response regulator containing a CheY-like receiver domain and a protein-glutamate methylesterase; CheB methylesterase 3799784 4689245 Pnap_3575 Polaromonas naphthalenivorans CJ2 CheB methylesterase YP_983792.1 3798759 D 365044 CDS YP_983793.1 121606464 4687753 complement(3799830..3800501) 1 NC_008781.1 KEGG: sme:SMc01549 hypothetical protein; hypothetical protein 3800501 4687753 Pnap_3576 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983793.1 3799830 R 365044 CDS YP_983794.1 121606465 4688743 3800883..3802121 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0150 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3802121 4688743 Pnap_3577 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_983794.1 3800883 D 365044 CDS YP_983795.1 121606466 4689420 complement(3802311..3802889) 1 NC_008781.1 PFAM: YceI family protein; KEGG: nma:NMA1457 periplasmic protein; hypothetical protein 3802889 4689420 Pnap_3578 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983795.1 3802311 R 365044 CDS YP_983796.1 121606467 4689267 complement(3802933..3803523) 1 NC_008781.1 PFAM: YceI family protein; KEGG: dar:Daro_2795 YceI; hypothetical protein 3803523 4689267 Pnap_3579 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983796.1 3802933 R 365044 CDS YP_983797.1 121606468 4690057 complement(3803569..3804087) 1 NC_008781.1 PFAM: cytochrome B561; KEGG: bpm:BURPS1710b_3379 cytochrome b561; cytochrome B561 3804087 4690057 Pnap_3580 Polaromonas naphthalenivorans CJ2 cytochrome B561 YP_983797.1 3803569 R 365044 CDS YP_983798.1 121606469 4690132 complement(3804273..3805244) 1 NC_008781.1 KEGG: pol:Bpro_0625 hypothetical protein; hypothetical protein 3805244 4690132 Pnap_3581 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983798.1 3804273 R 365044 CDS YP_983799.1 121606470 4690218 3805325..3806374 1 NC_008781.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 3806374 4690218 Pnap_3582 Polaromonas naphthalenivorans CJ2 serine/threonine protein kinase YP_983799.1 3805325 D 365044 CDS YP_983800.1 121606471 4690149 3806480..3807514 1 NC_008781.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: xac:XAC3367 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3807514 4690149 Pnap_3583 Polaromonas naphthalenivorans CJ2 ErfK/YbiS/YcfS/YnhG family protein YP_983800.1 3806480 D 365044 CDS YP_983801.1 121606472 4686526 3807558..3808082 1 NC_008781.1 PFAM: peptidase M23B; KEGG: xcv:XCV3487 putative metalloendopeptidase; peptidase M23B 3808082 4686526 Pnap_3584 Polaromonas naphthalenivorans CJ2 peptidase M23B YP_983801.1 3807558 D 365044 CDS YP_983802.1 121606473 4686595 complement(3808113..3808673) 1 NC_008781.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: eba:ebA2889 hypothetical protein; hypothetical protein 3808673 4686595 Pnap_3585 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983802.1 3808113 R 365044 CDS YP_983803.1 121606474 4686629 complement(3808670..3810247) 1 NC_008781.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: reu:Reut_B3942 hypothetical protein; peptidoglycan-binding domain-containing protein 3810247 4686629 Pnap_3586 Polaromonas naphthalenivorans CJ2 peptidoglycan-binding domain-containing protein YP_983803.1 3808670 R 365044 CDS YP_983804.1 121606475 4687328 complement(3810387..3812276) 1 NC_008781.1 molecular chaperone; heat shock protein 90 3812276 4687328 Pnap_3587 Polaromonas naphthalenivorans CJ2 heat shock protein 90 YP_983804.1 3810387 R 365044 CDS YP_983805.1 121606476 4687437 3812565..3813212 1 NC_008781.1 KEGG: ddi:DDB0204485 hypothetical protein; hypothetical protein 3813212 4687437 Pnap_3588 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983805.1 3812565 D 365044 CDS YP_983806.1 121606477 4687977 3813401..3814063 1 NC_008781.1 hypothetical protein 3814063 4687977 Pnap_3589 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983806.1 3813401 D 365044 CDS YP_983807.1 121606478 4688083 3814083..3814730 1 NC_008781.1 hypothetical protein 3814730 4688083 Pnap_3590 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983807.1 3814083 D 365044 CDS YP_983808.1 121606479 4688104 3814731..3815213 1 NC_008781.1 hypothetical protein 3815213 4688104 Pnap_3591 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983808.1 3814731 D 365044 CDS YP_983809.1 121606480 4688188 3815210..3816037 1 NC_008781.1 KEGG: ttj:TTHA0775 hypothetical protein; hypothetical protein 3816037 4688188 Pnap_3592 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983809.1 3815210 D 365044 CDS YP_983810.1 121606481 4688786 3816034..3818121 1 NC_008781.1 KEGG: dge:Dgeo_2435 hypothetical protein; hypothetical protein 3818121 4688786 Pnap_3593 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983810.1 3816034 D 365044 CDS YP_983811.1 121606482 4688600 complement(3818185..3819534) 1 NC_008781.1 PFAM: PGAP1 family protein; KEGG: rfr:Rfer_3545 PGAP1-like; PGAP1 family protein 3819534 4688600 Pnap_3594 Polaromonas naphthalenivorans CJ2 PGAP1 family protein YP_983811.1 3818185 R 365044 CDS YP_983812.1 121606483 4689354 complement(3819672..3820508) 1 NC_008781.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_0606 pseudouridine synthase, Rsu; pseudouridine synthase 3820508 4689354 Pnap_3595 Polaromonas naphthalenivorans CJ2 pseudouridine synthase YP_983812.1 3819672 R 365044 CDS YP_983813.1 121606484 4689243 3820620..3821177 1 NC_008781.1 KEGG: rso:RSc0361 probable transmembrane protein; hypothetical protein 3821177 4689243 Pnap_3596 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983813.1 3820620 D 365044 CDS YP_983814.1 121606485 4689563 complement(3821202..3821846) 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bja:blr5281 two-component response regulator; two component LuxR family transcriptional regulator 3821846 4689563 Pnap_3597 Polaromonas naphthalenivorans CJ2 two component LuxR family transcriptional regulator YP_983814.1 3821202 R 365044 CDS YP_983815.1 121606486 4690076 complement(3821843..3823162) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: mfa:Mfla_0814 signal transduction histidine kinase, glucose-6-phosphate specific; integral membrane sensor signal transduction histidine kinase 3823162 4690076 Pnap_3598 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_983815.1 3821843 R 365044 CDS YP_983816.1 121606487 4686589 3823415..3825883 1 NC_008781.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: mfa:Mfla_1253 TonB-dependent receptor; TonB-dependent receptor 3825883 4686589 Pnap_3599 Polaromonas naphthalenivorans CJ2 TonB-dependent receptor YP_983816.1 3823415 D 365044 CDS YP_983817.1 121606488 4688272 complement(3825987..3826694) 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bpm:BURPS1710b_1397 DNA-binding response regulator KdpE; two component transcriptional regulator 3826694 4688272 Pnap_3600 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_983817.1 3825987 R 365044 CDS YP_983818.1 121606489 4689999 complement(3826704..3829403) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; KEGG: dar:Daro_1080 ATP-binding region, ATPase-like:histidine kinase A, N-terminal:osmosensitive K+ channel His kinase sensor; osmosensitive K+ channel signal transduction histidine kinase 3829403 4689999 Pnap_3601 Polaromonas naphthalenivorans CJ2 osmosensitive K+ channel signal transduction histidine kinase YP_983818.1 3826704 R 365044 CDS YP_983819.1 121606490 4687290 complement(3829422..3830012) 1 NC_008781.1 KEGG: bbr:BB3919 potassium-transporting ATPase C chain; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K+ transporting ATPase, KdpC subunit; potassium-transporting ATPase C 3830012 4687290 Pnap_3602 Polaromonas naphthalenivorans CJ2 potassium-transporting ATPase C YP_983819.1 3829422 R 365044 CDS YP_983820.1 121606491 4690130 complement(3830032..3832110) 1 NC_008781.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_1086 ATPase, E1-E2 type:potassium-translocating P-type ATPase, B subunit; K+-transporting ATPase subunit B 3832110 4690130 Pnap_3603 Polaromonas naphthalenivorans CJ2 K+-transporting ATPase subunit B YP_983820.1 3830032 R 365044 CDS YP_983821.1 121606492 4686166 complement(3832130..3833929) 1 NC_008781.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 3833929 4686166 Pnap_3604 Polaromonas naphthalenivorans CJ2 potassium-transporting ATPase subunit A YP_983821.1 3832130 R 365044 CDS YP_983822.1 121606493 4690155 complement(3834319..3835026) 1 NC_008781.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pol:Bpro_0605 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 3835026 4690155 Pnap_3605 Polaromonas naphthalenivorans CJ2 CRP/FNR family transcriptional regulator YP_983822.1 3834319 R 365044 CDS YP_983823.1 121606494 4690177 3835164..3836351 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_4184 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3836351 4690177 Pnap_3606 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_983823.1 3835164 D 365044 CDS YP_983824.1 121606495 4690214 3836500..3838446 1 NC_008781.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_0604 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3838446 4690214 Pnap_3607 Polaromonas naphthalenivorans CJ2 AMP-dependent synthetase and ligase YP_983824.1 3836500 D 365044 CDS YP_983825.1 121606496 4690003 3838457..3839242 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3541 ABC transporter related; ABC transporter-like protein 3839242 4690003 Pnap_3608 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983825.1 3838457 D 365044 CDS YP_983826.1 121606497 4690029 3839380..3840309 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_0602 inner-membrane translocator; inner-membrane translocator 3840309 4690029 Pnap_3609 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_983826.1 3839380 D 365044 CDS YP_983827.1 121606498 4690048 3840336..3841412 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_0601 inner-membrane translocator; inner-membrane translocator 3841412 4690048 Pnap_3610 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_983827.1 3840336 D 365044 CDS YP_983828.1 121606499 4689735 3841496..3842824 1 NC_008781.1 KEGG: rfr:Rfer_3538 hypothetical protein; hypothetical protein 3842824 4689735 Pnap_3611 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983828.1 3841496 D 365044 CDS YP_983829.1 121606500 4689762 3842920..3843729 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3537 ABC transporter related; ABC transporter-like protein 3843729 4689762 Pnap_3612 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983829.1 3842920 D 365044 CDS YP_983830.1 121606501 4689012 3843815..3845065 1 NC_008781.1 KEGG: pol:Bpro_0598 putative phenylacetate-CoA ligase; putative phenylacetate-CoA ligase 3845065 4689012 Pnap_3613 Polaromonas naphthalenivorans CJ2 putative phenylacetate-CoA ligase YP_983830.1 3843815 D 365044 CDS YP_983831.1 121606502 4689585 3845161..3846150 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0597 uncharacterized protein UPF0065; hypothetical protein 3846150 4689585 Pnap_3614 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983831.1 3845161 D 365044 CDS YP_983832.1 121606503 4688413 complement(3846462..3846758) 1 NC_008781.1 KEGG: pol:Bpro_0595 hypothetical protein; hypothetical protein 3846758 4688413 Pnap_3615 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983832.1 3846462 R 365044 CDS YP_983833.1 121606504 4689296 3846894..3847646 1 NC_008781.1 KEGG: pol:Bpro_0594 hypothetical protein; hypothetical protein 3847646 4689296 Pnap_3616 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983833.1 3846894 D 365044 CDS YP_983834.1 121606505 4688241 3847744..3850212 1 NC_008781.1 catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase 3850212 4688241 Pnap_3617 Polaromonas naphthalenivorans CJ2 salicylyl-CoA 5-hydroxylase YP_983834.1 3847744 D 365044 CDS YP_983835.1 121606506 4687336 3850269..3850745 1 NC_008781.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_0592 transcriptional regulator, MarR family; MarR family transcriptional regulator 3850745 4687336 Pnap_3618 Polaromonas naphthalenivorans CJ2 MarR family transcriptional regulator YP_983835.1 3850269 D 365044 CDS YP_983836.1 121606507 4690170 3850742..3851596 1 NC_008781.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3851596 4690170 Pnap_3619 Polaromonas naphthalenivorans CJ2 enoyl-CoA hydratase YP_983836.1 3850742 D 365044 CDS YP_983837.1 121606508 4686777 3851624..3852805 1 NC_008781.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0590 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3852805 4686777 Pnap_3620 Polaromonas naphthalenivorans CJ2 acyl-CoA dehydrogenase domain-containing protein YP_983837.1 3851624 D 365044 CDS YP_983838.1 121606509 4689680 3852802..3854430 1 NC_008781.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_0589 benzoate-CoA ligase family; AMP-dependent synthetase and ligase 3854430 4689680 Pnap_3621 Polaromonas naphthalenivorans CJ2 AMP-dependent synthetase and ligase YP_983838.1 3852802 D 365044 CDS YP_983839.1 121606510 4686058 3854427..3854867 1 NC_008781.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_0588 thioesterase superfamily; thioesterase superfamily protein 3854867 4686058 Pnap_3622 Polaromonas naphthalenivorans CJ2 thioesterase superfamily protein YP_983839.1 3854427 D 365044 CDS YP_983840.1 121606511 4687515 3854864..3855259 1 NC_008781.1 PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_0587 endoribonuclease L-PSP; endoribonuclease L-PSP 3855259 4687515 Pnap_3623 Polaromonas naphthalenivorans CJ2 endoribonuclease L-PSP YP_983840.1 3854864 D 365044 CDS YP_983841.1 121606512 4686769 complement(3855560..3855940) 1 NC_008781.1 KEGG: pcr:Pcryo_0811 17 kDa surface antigen; hypothetical protein 3855940 4686769 Pnap_3624 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983841.1 3855560 R 365044 CDS YP_983842.1 121606513 4686069 3856726..3857034 1 NC_008781.1 hypothetical protein 3857034 4686069 Pnap_3625 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983842.1 3856726 D 365044 CDS YP_983843.1 121606514 4687460 3857378..3858097 1 NC_008781.1 SMART: cyclic nucleotide-binding; KEGG: pol:Bpro_0177 cyclic nucleotide-binding domain (cNMP-BD) protein; CRP/FNR family transcriptional regulator 3858097 4687460 Pnap_3626 Polaromonas naphthalenivorans CJ2 CRP/FNR family transcriptional regulator YP_983843.1 3857378 D 365044 CDS YP_983844.1 121606515 4688963 3858167..3858904 1 NC_008781.1 SMART: regulatory protein, Crp; KEGG: pol:Bpro_0177 cyclic nucleotide-binding domain (cNMP-BD) protein; CRP/FNR family transcriptional regulator 3858904 4688963 Pnap_3627 Polaromonas naphthalenivorans CJ2 CRP/FNR family transcriptional regulator YP_983844.1 3858167 D 365044 CDS YP_983845.1 121606516 4690008 complement(3858924..3859802) 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_2543 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3859802 4690008 Pnap_3628 Polaromonas naphthalenivorans CJ2 two component LuxR family transcriptional regulator YP_983845.1 3858924 R 365044 CDS YP_983846.1 121606517 4689376 complement(3860408..3861082) 1 NC_008781.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: pol:Bpro_4433 two component transcriptional regulator, fis family; two component Fis family transcriptional regulator 3861082 4689376 Pnap_3629 Polaromonas naphthalenivorans CJ2 two component Fis family transcriptional regulator YP_983846.1 3860408 R 365044 CDS YP_983847.1 121606518 4690073 complement(3861164..3863461) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4434 multi-sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3863461 4690073 Pnap_3630 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_983847.1 3861164 R 365044 CDS YP_983848.1 121606519 4689584 complement(3863458..3864117) 1 NC_008781.1 KEGG: pol:Bpro_4435 putative proline rich signal peptide protein; hypothetical protein 3864117 4689584 Pnap_3631 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983848.1 3863458 R 365044 CDS YP_983849.1 121606520 4689417 complement(3864077..3865429) 1 NC_008781.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_4436 sun protein; sun protein 3865429 4689417 Pnap_3632 Polaromonas naphthalenivorans CJ2 sun protein YP_983849.1 3864077 R 365044 CDS YP_983850.1 121606521 4687496 3865706..3866197 1 NC_008781.1 KEGG: eba:p2A365 transposase, fragment; transposase 3866197 4687496 Pnap_3633 Polaromonas naphthalenivorans CJ2 transposase YP_983850.1 3865706 D 365044 CDS YP_983851.1 121606522 4688004 3866305..3866535 1 NC_008781.1 KEGG: mac:MA0437 transposase; transposase 3866535 4688004 Pnap_3634 Polaromonas naphthalenivorans CJ2 transposase YP_983851.1 3866305 D 365044 CDS YP_983852.1 121606523 4686623 3866618..3867076 1 NC_008781.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein 3867076 4686623 Pnap_3635 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983852.1 3866618 D 365044 CDS YP_983853.1 121606524 4686305 3867096..3867572 1 NC_008781.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 3867572 4686305 Pnap_3636 Polaromonas naphthalenivorans CJ2 putative transposase of insertion sequence ISRm10-1 YP_983853.1 3867096 D 365044 CDS YP_983854.1 121606525 4686748 complement(3867580..3868599) 1 NC_008781.1 PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_4439 peptidase M48, Ste24p; peptidase M48, Ste24p 3868599 4686748 Pnap_3637 Polaromonas naphthalenivorans CJ2 peptidase M48, Ste24p YP_983854.1 3867580 R 365044 CDS YP_983855.1 121606526 4687329 complement(3868639..3869232) 1 NC_008781.1 PFAM: LemA family protein; KEGG: pol:Bpro_4440 LemA; LemA family protein 3869232 4687329 Pnap_3638 Polaromonas naphthalenivorans CJ2 LemA family protein YP_983855.1 3868639 R 365044 CDS YP_983856.1 121606527 4687837 complement(3869514..3873728) 1 NC_008781.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 3873728 4687837 Pnap_3639 Polaromonas naphthalenivorans CJ2 DNA-directed RNA polymerase subunit beta' YP_983856.1 3869514 R 365044 CDS YP_983857.1 121606528 4688631 complement(3873748..3877860) 1 NC_008781.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 3877860 rpoB 4688631 rpoB Polaromonas naphthalenivorans CJ2 DNA-directed RNA polymerase subunit beta YP_983857.1 3873748 R 365044 CDS YP_983858.1 121606529 4687937 complement(3878189..3878566) 1 NC_008781.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 3878566 rplL 4687937 rplL Polaromonas naphthalenivorans CJ2 50S ribosomal protein L7/L12 YP_983858.1 3878189 R 365044 CDS YP_983859.1 121606530 4687761 complement(3878653..3879204) 1 NC_008781.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 3879204 rplJ 4687761 rplJ Polaromonas naphthalenivorans CJ2 50S ribosomal protein L10 YP_983859.1 3878653 R 365044 CDS YP_983860.1 121606531 4689292 complement(3879473..3880168) 1 NC_008781.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 3880168 rplA 4689292 rplA Polaromonas naphthalenivorans CJ2 50S ribosomal protein L1 YP_983860.1 3879473 R 365044 CDS YP_983861.1 121606532 4688473 complement(3880165..3880599) 1 NC_008781.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 3880599 rplK 4688473 rplK Polaromonas naphthalenivorans CJ2 50S ribosomal protein L11 YP_983861.1 3880165 R 365044 CDS YP_983862.1 121606533 4687819 complement(3880776..3881372) 1 NC_008781.1 KEGG: pol:Bpro_4447 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; NusG antitermination factor 3881372 4687819 Pnap_3645 Polaromonas naphthalenivorans CJ2 NusG antitermination factor YP_983862.1 3880776 R 365044 CDS YP_983863.1 121606534 4688834 complement(3881372..3881755) 1 NC_008781.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 3881755 secE 4688834 secE Polaromonas naphthalenivorans CJ2 preprotein translocase subunit SecE YP_983863.1 3881372 R 365044 CDS YP_983864.1 121606535 4688893 complement(3881983..3883173) 1 NC_008781.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3883173 4688893 Pnap_3647 Polaromonas naphthalenivorans CJ2 elongation factor Tu YP_983864.1 3881983 R 365044 CDS YP_983865.1 121606536 4688811 complement(3883841..3884578) 1 NC_008781.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 3884578 4688811 Pnap_3648 Polaromonas naphthalenivorans CJ2 uracil-DNA glycosylase YP_983865.1 3883841 R 365044 CDS YP_983866.1 121606537 4686230 complement(3884593..3885384) 1 NC_008781.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; Indole-3-glycerol phosphate synthase 3885384 trpC 4686230 trpC Polaromonas naphthalenivorans CJ2 Indole-3-glycerol phosphate synthase YP_983866.1 3884593 R 365044 CDS YP_983867.1 121606538 4689060 complement(3885440..3886543) 1 NC_008781.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 3886543 trpD 4689060 trpD Polaromonas naphthalenivorans CJ2 anthranilate phosphoribosyltransferase YP_983867.1 3885440 R 365044 CDS YP_983868.1 121606539 4687840 complement(3886536..3887585) 1 NC_008781.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: pol:Bpro_4454 threonine aldolase; threonine aldolase 3887585 4687840 Pnap_3651 Polaromonas naphthalenivorans CJ2 threonine aldolase YP_983868.1 3886536 R 365044 CDS YP_983869.1 121606540 4688029 complement(3887643..3888227) 1 NC_008781.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 3888227 4688029 Pnap_3652 Polaromonas naphthalenivorans CJ2 anthranilate synthase component II YP_983869.1 3887643 R 365044 CDS YP_983870.1 121606541 4686096 complement(3888231..3888545) 1 NC_008781.1 PFAM: Chorismate mutase; KEGG: pol:Bpro_4456 chorismate mutase; chorismate mutase 3888545 4686096 Pnap_3653 Polaromonas naphthalenivorans CJ2 chorismate mutase YP_983870.1 3888231 R 365044 CDS YP_983871.1 121606542 4686190 complement(3888549..3890048) 1 NC_008781.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 3890048 4686190 Pnap_3654 Polaromonas naphthalenivorans CJ2 anthranilate synthase component I YP_983871.1 3888549 R 365044 CDS YP_983872.1 121606543 4687191 3890486..3891073 1 NC_008781.1 KEGG: pol:Bpro_4459 putative lipoprotein transmembrane; putative lipoprotein transmembrane 3891073 4687191 Pnap_3655 Polaromonas naphthalenivorans CJ2 putative lipoprotein transmembrane YP_983872.1 3890486 D 365044 CDS YP_983873.1 121606544 4687824 complement(3891106..3891810) 1 NC_008781.1 KEGG: pol:Bpro_4462 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 3891810 4687824 Pnap_3656 Polaromonas naphthalenivorans CJ2 phosphoglycolate phosphatase YP_983873.1 3891106 R 365044 CDS YP_983874.1 121606545 4687806 complement(3891980..3892651) 1 NC_008781.1 PFAM: Ketopantoate reductase ApbA/PanE, C-terminal domain protein; KEGG: pol:Bpro_0197 2-dehydropantoate 2-reductase; ketopantoate reductase ApbA/PanE 3892651 4687806 Pnap_3657 Polaromonas naphthalenivorans CJ2 ketopantoate reductase ApbA/PanE YP_983874.1 3891980 R 365044 CDS YP_983875.1 121606546 4687910 complement(3892712..3893251) 1 NC_008781.1 PFAM: cytochrome B561; KEGG: par:Psyc_2075 putative nickel-dependent hydrogenase cytochrome b-type subunit; cytochrome B561 3893251 4687910 Pnap_3658 Polaromonas naphthalenivorans CJ2 cytochrome B561 YP_983875.1 3892712 R 365044 CDS YP_983876.1 121606547 4689209 complement(3893288..3893545) 1 NC_008781.1 KEGG: psp:PSPPH_3452 hypothetical protein; hypothetical protein 3893545 4689209 Pnap_3659 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983876.1 3893288 R 365044 CDS YP_983877.1 121606548 4690158 complement(3893635..3894327) 1 NC_008781.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: pol:Bpro_4466 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 3894327 4690158 Pnap_3660 Polaromonas naphthalenivorans CJ2 ribulose-phosphate 3-epimerase YP_983877.1 3893635 R 365044 CDS YP_983878.1 121606549 4689694 3894409..3894837 1 NC_008781.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 3894837 apaG 4689694 apaG Polaromonas naphthalenivorans CJ2 ApaG protein YP_983878.1 3894409 D 365044 CDS YP_983879.1 121606550 4688639 3894860..3896824 1 NC_008781.1 KEGG: pol:Bpro_4468 putative site-specific recombinase transmembrane protein; putative site-specific recombinase transmembrane protein 3896824 4688639 Pnap_3662 Polaromonas naphthalenivorans CJ2 putative site-specific recombinase transmembrane protein YP_983879.1 3894860 D 365044 CDS YP_983880.1 121606551 4687246 3897027..3898286 1 NC_008781.1 PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4469 sodium/hydrogen exchanger; sodium/hydrogen exchanger 3898286 4687246 Pnap_3663 Polaromonas naphthalenivorans CJ2 sodium/hydrogen exchanger YP_983880.1 3897027 D 365044 CDS YP_983881.1 121606552 4686933 3898276..3899421 1 NC_008781.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 3899421 4686933 Pnap_3664 Polaromonas naphthalenivorans CJ2 carboxylate-amine ligase YP_983881.1 3898276 D 365044 CDS YP_983882.1 121606553 4689342 3899467..3900465 1 NC_008781.1 KEGG: pol:Bpro_4471 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 3900465 4689342 Pnap_3665 Polaromonas naphthalenivorans CJ2 thiamine-monophosphate kinase YP_983882.1 3899467 D 365044 CDS YP_983883.1 121606554 4690207 3900475..3901032 1 NC_008781.1 PFAM: phosphatidylglycerophosphatase A; KEGG: pol:Bpro_4475 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 3901032 4690207 Pnap_3666 Polaromonas naphthalenivorans CJ2 phosphatidylglycerophosphatase A YP_983883.1 3900475 D 365044 CDS YP_983884.1 121606555 4689350 3901029..3901550 1 NC_008781.1 PFAM: CinA domain protein; KEGG: pol:Bpro_4476 CinA-like; CinA domain-containing protein 3901550 4689350 Pnap_3667 Polaromonas naphthalenivorans CJ2 CinA domain-containing protein YP_983884.1 3901029 D 365044 CDS YP_983885.1 121606556 4687857 complement(3901561..3901839) 1 NC_008781.1 hypothetical protein 3901839 4687857 Pnap_3668 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983885.1 3901561 R 365044 CDS YP_983886.1 121606557 4686063 complement(3901845..3902288) 1 NC_008781.1 PFAM: OsmC family protein; KEGG: rru:Rru_A0580 OsmC-like protein; OsmC family protein 3902288 4686063 Pnap_3669 Polaromonas naphthalenivorans CJ2 OsmC family protein YP_983886.1 3901845 R 365044 CDS YP_983887.1 121606558 4687225 complement(3902406..3903191) 1 NC_008781.1 KEGG: rfr:Rfer_2633 spermidine synthase-like; spermidine synthase-like protein 3903191 4687225 Pnap_3670 Polaromonas naphthalenivorans CJ2 spermidine synthase-like protein YP_983887.1 3902406 R 365044 CDS YP_983888.1 121606559 4688168 complement(3903243..3904025) 1 NC_008781.1 PFAM: regulatory protein, Crp; KEGG: pol:Bpro_4529 putative transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 3904025 4688168 Pnap_3671 Polaromonas naphthalenivorans CJ2 CRP/FNR family transcriptional regulator YP_983888.1 3903243 R 365044 CDS YP_983889.1 121606560 4686327 complement(3904068..3904457) 1 NC_008781.1 hypothetical protein 3904457 4686327 Pnap_3672 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983889.1 3904068 R 365044 CDS YP_983890.1 121606561 4688337 3905089..3906210 1 NC_008781.1 KEGG: tte:TTE2411 S-layer homology domain; hypothetical protein 3906210 4688337 Pnap_3673 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983890.1 3905089 D 365044 CDS YP_983891.1 121606562 4690217 3906234..3906908 1 NC_008781.1 KEGG: pol:Bpro_1320 hypothetical protein; hypothetical protein 3906908 4690217 Pnap_3674 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983891.1 3906234 D 365044 CDS YP_983892.1 121606563 4688712 3907016..3907879 1 NC_008781.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2859 UbiE/COQ5 methyltransferase; type 11 methyltransferase 3907879 4688712 Pnap_3675 Polaromonas naphthalenivorans CJ2 type 11 methyltransferase YP_983892.1 3907016 D 365044 CDS YP_983893.1 121606564 4686244 complement(3908012..3910912) 1 NC_008781.1 KEGG: bxe:Bxe_A2123 putative chaperone protein, HscA/DnaK; putative chaperone protein, HscA/DnaK 3910912 4686244 Pnap_3676 Polaromonas naphthalenivorans CJ2 putative chaperone protein, HscA/DnaK YP_983893.1 3908012 R 365044 CDS YP_983894.1 121606565 4686455 complement(3910977..3912890) 1 NC_008781.1 KEGG: bxe:Bxe_A2124 putative molecular chaperone protein HspA/DnaK; putative molecular chaperone protein HspA/DnaK 3912890 4686455 Pnap_3677 Polaromonas naphthalenivorans CJ2 putative molecular chaperone protein HspA/DnaK YP_983894.1 3910977 R 365044 CDS YP_983895.1 121606566 4687786 complement(3912887..3913453) 1 NC_008781.1 KEGG: bte:BTH_II1321 hypothetical protein; hypothetical protein 3913453 4687786 Pnap_3678 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983895.1 3912887 R 365044 CDS YP_983896.1 121606567 4689258 3914029..3915252 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_1848 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3915252 4689258 Pnap_3679 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_983896.1 3914029 D 365044 CDS YP_983897.1 121606568 4689721 complement(3915375..3917612) 1 NC_008781.1 KEGG: cvi:CV3664 probable isocitrate dehydrogenase (NADP); TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase 3917612 4689721 Pnap_3680 Polaromonas naphthalenivorans CJ2 isocitrate dehydrogenase YP_983897.1 3915375 R 365044 CDS YP_983898.1 121606569 4689327 3917942..3918226 1 NC_008781.1 PFAM: SpoVT/AbrB domain protein; KEGG: mca:MCA1622 virulence-associated protein VagC, putative; SpoVT/AbrB domain-containing protein 3918226 4689327 Pnap_3681 Polaromonas naphthalenivorans CJ2 SpoVT/AbrB domain-containing protein YP_983898.1 3917942 D 365044 CDS YP_983899.1 121606570 4689021 3918230..3918634 1 NC_008781.1 PFAM: PilT protein domain protein; KEGG: mca:MCA1623 virulence associated protein VagD, putative; PilT domain-containing protein 3918634 4689021 Pnap_3682 Polaromonas naphthalenivorans CJ2 PilT domain-containing protein YP_983899.1 3918230 D 365044 CDS YP_983900.1 121606571 4686850 complement(3918792..3920984) 1 NC_008781.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 3920984 4686850 Pnap_3683 Polaromonas naphthalenivorans CJ2 malate synthase G YP_983900.1 3918792 R 365044 CDS YP_983901.1 121606572 4686298 complement(3921089..3921838) 1 NC_008781.1 KEGG: pol:Bpro_4516 haloacid dehalogenase, type II; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase 3921838 4686298 Pnap_3684 Polaromonas naphthalenivorans CJ2 haloacid dehalogenase YP_983901.1 3921089 R 365044 CDS YP_983902.1 121606573 4686073 3922034..3924268 1 NC_008781.1 PFAM: pyruvate carboxyltransferase; L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4514 pyruvate carboxyltransferase; pyruvate carboxyltransferase 3924268 4686073 Pnap_3685 Polaromonas naphthalenivorans CJ2 pyruvate carboxyltransferase YP_983902.1 3922034 D 365044 CDS YP_983903.1 121606574 4686106 3924324..3925019 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_1091 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3925019 4686106 Pnap_3686 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_983903.1 3924324 D 365044 CDS YP_983904.1 121606575 4686140 3925016..3926383 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: rfr:Rfer_1092 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3926383 4686140 Pnap_3687 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_983904.1 3925016 D 365044 CDS YP_983905.1 121606576 4686175 complement(3926429..3927475) 1 NC_008781.1 PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0342 aldo/keto reductase; aldo/keto reductase 3927475 4686175 Pnap_3688 Polaromonas naphthalenivorans CJ2 aldo/keto reductase YP_983905.1 3926429 R 365044 CDS YP_983906.1 121606577 4686207 3927720..3928970 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_1097 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3928970 4686207 Pnap_3689 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_983906.1 3927720 D 365044 CDS YP_983907.1 121606578 4686217 3929003..3930190 1 NC_008781.1 KEGG: cvi:CV3298 maltoporin precursor; maltoporin 3930190 4686217 Pnap_3690 Polaromonas naphthalenivorans CJ2 maltoporin YP_983907.1 3929003 D 365044 CDS YP_983908.1 121606579 4686228 3930293..3931174 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1096 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3931174 4686228 Pnap_3691 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_983908.1 3930293 D 365044 CDS YP_983909.1 121606580 4686238 3931164..3932033 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1095 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3932033 4686238 Pnap_3692 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_983909.1 3931164 D 365044 CDS YP_983910.1 121606581 4687343 3932040..3933113 1 NC_008781.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_1094 ABC transporter related; ABC transporter-like protein 3933113 4687343 Pnap_3693 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983910.1 3932040 D 365044 CDS YP_983911.1 121606582 4687387 3933207..3934673 1 NC_008781.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 3934673 4687387 Pnap_3694 Polaromonas naphthalenivorans CJ2 glucose-6-phosphate 1-dehydrogenase YP_983911.1 3933207 D 365044 CDS YP_983912.1 121606583 4687409 3934728..3935735 1 NC_008781.1 KEGG: eba:ebA584 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; glucokinase 3935735 4687409 Pnap_3695 Polaromonas naphthalenivorans CJ2 glucokinase YP_983912.1 3934728 D 365044 CDS YP_983913.1 121606584 4687221 3935812..3936072 1 NC_008781.1 KEGG: rfr:Rfer_0192 hypothetical protein; hypothetical protein 3936072 4687221 Pnap_3696 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983913.1 3935812 D 365044 CDS YP_983914.1 121606585 4688025 3936118..3937083 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4493 transcriptional regulator, LysR family; LysR family transcriptional regulator 3937083 4688025 Pnap_3697 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_983914.1 3936118 D 365044 CDS YP_983915.1 121606586 4688135 complement(3937189..3937824) 1 NC_008781.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_4492 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3937824 4688135 Pnap_3698 Polaromonas naphthalenivorans CJ2 lysine exporter protein LysE/YggA YP_983915.1 3937189 R 365044 CDS YP_983916.1 121606587 4688228 3937968..3938861 1 NC_008781.1 specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3938861 4688228 Pnap_3699 Polaromonas naphthalenivorans CJ2 chromosome replication initiation inhibitor protein YP_983916.1 3937968 D 365044 CDS YP_983917.1 121606588 4688605 complement(3939014..3939358) 1 NC_008781.1 PFAM: PsiF repeat protein; KEGG: reu:Reut_A0351 PsiF; PsiF repeat-containing protein 3939358 4688605 Pnap_3700 Polaromonas naphthalenivorans CJ2 PsiF repeat-containing protein YP_983917.1 3939014 R 365044 CDS YP_983918.1 121606589 4688689 3939548..3941224 1 NC_008781.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3941224 argS 4688689 argS Polaromonas naphthalenivorans CJ2 arginyl-tRNA synthetase YP_983918.1 3939548 D 365044 CDS YP_983919.1 121606590 4689421 3941267..3942136 1 NC_008781.1 PFAM: Sporulation domain protein; KEGG: pol:Bpro_4489 sporulation related; sporulation domain-containing protein 3942136 4689421 Pnap_3702 Polaromonas naphthalenivorans CJ2 sporulation domain-containing protein YP_983919.1 3941267 D 365044 CDS YP_983920.1 121606591 4689215 3942211..3942873 1 NC_008781.1 PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_4488 DsbA oxidoreductase; DSBA oxidoreductase 3942873 4689215 Pnap_3703 Polaromonas naphthalenivorans CJ2 DSBA oxidoreductase YP_983920.1 3942211 D 365044 CDS YP_983921.1 121606592 4689233 3943302..3944966 1 NC_008781.1 PFAM: surface antigen (D15); Polypeptide-transport-associated domain protein, ShlB-type; KEGG: par:Psyc_1782 putative heme-hemopexin utilization protein B; polypeptide-transport-associated domain-containing protein 3944966 4689233 Pnap_3704 Polaromonas naphthalenivorans CJ2 polypeptide-transport-associated domain-containing protein YP_983921.1 3943302 D 365044 CDS YP_983922.1 121606593 4689256 3945047..3948364 1 NC_008781.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Collagen triple helix repeat; filamentous haemagglutinin domain protein; KEGG: mlo:mlr0585 hypothetical glycine-rich protein; filamentous hemagglutinin outer membrane protein 3948364 4689256 Pnap_3705 Polaromonas naphthalenivorans CJ2 filamentous hemagglutinin outer membrane protein YP_983922.1 3945047 D 365044 CDS YP_983923.1 121606594 4689597 3948484..3949224 1 NC_008781.1 KEGG: par:Psyc_1780 hypothetical protein; hypothetical protein 3949224 4689597 Pnap_3706 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983923.1 3948484 D 365044 CDS YP_983924.1 121606595 4689286 3949373..3950488 1 NC_008781.1 PFAM: glycosyl transferase, family 2; KEGG: pcu:pc0452 hypothetical protein; glycosyl transferase family protein 3950488 4689286 Pnap_3707 Polaromonas naphthalenivorans CJ2 glycosyl transferase family protein YP_983924.1 3949373 D 365044 CDS YP_983925.1 121606596 4690052 3950655..3951299 1 NC_008781.1 PFAM: OstA family protein; KEGG: pol:Bpro_4487 OstA-like protein; OstA family protein 3951299 4690052 Pnap_3708 Polaromonas naphthalenivorans CJ2 OstA family protein YP_983925.1 3950655 D 365044 CDS YP_983926.1 121606597 4690187 3951304..3952101 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4486 ABC transporter related; ABC transporter-like protein 3952101 4690187 Pnap_3709 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_983926.1 3951304 D 365044 CDS YP_983927.1 121606598 4690023 3952112..3953677 1 NC_008781.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: pol:Bpro_4485 sigma-54 (RpoN); RNA polymerase sigma-54 subunit RpoN 3953677 4690023 Pnap_3710 Polaromonas naphthalenivorans CJ2 RNA polymerase sigma-54 subunit RpoN YP_983927.1 3952112 D 365044 CDS YP_983928.1 121606599 4689734 3953825..3955240 1 NC_008781.1 PFAM: putative RNA methylase; THUMP domain protein; KEGG: pol:Bpro_4484 putative RNA methylase; putative RNA methylase 3955240 4689734 Pnap_3711 Polaromonas naphthalenivorans CJ2 putative RNA methylase YP_983928.1 3953825 D 365044 CDS YP_983929.1 121606600 4689671 3955237..3955680 1 NC_008781.1 KEGG: pol:Bpro_4483 protein of unknown function DUF132; hypothetical protein 3955680 4689671 Pnap_3712 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983929.1 3955237 D 365044 CDS YP_983930.1 121606601 4689483 complement(3955720..3956163) 1 NC_008781.1 KEGG: bja:blr7500 hypothetical protein; hypothetical protein 3956163 4689483 Pnap_3713 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983930.1 3955720 R 365044 CDS YP_983931.1 121606602 4689052 complement(3956210..3956551) 1 NC_008781.1 hypothetical protein 3956551 4689052 Pnap_3714 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983931.1 3956210 R 365044 CDS YP_983932.1 121606603 4688814 complement(3956983..3957369) 1 NC_008781.1 PFAM: PilT protein domain protein; KEGG: tth:TTC0113 hypothetical protein; PilT domain-containing protein 3957369 4688814 Pnap_3715 Polaromonas naphthalenivorans CJ2 PilT domain-containing protein YP_983932.1 3956983 R 365044 CDS YP_983933.1 121606604 4688499 complement(3957366..3957611) 1 NC_008781.1 TIGRFAM: prevent-host-death family protein; KEGG: mag:amb1707 antitoxin of toxin-antitoxin stability system; prevent-host-death family protein 3957611 4688499 Pnap_3716 Polaromonas naphthalenivorans CJ2 prevent-host-death family protein YP_983933.1 3957366 R 365044 CDS YP_983934.1 121606605 4688316 complement(3957654..3958721) 1 NC_008781.1 TIGRFAM: cytidyltransferase-related domain; PFAM: NUDIX hydrolase; cytidylyltransferase; KEGG: syf:Synpcc7942_0205 cytidyltransferase-related; cytidyltransferase-like protein 3958721 4688316 Pnap_3717 Polaromonas naphthalenivorans CJ2 cytidyltransferase-like protein YP_983934.1 3957654 R 365044 CDS YP_983935.1 121606606 4688257 complement(3958729..3960429) 1 NC_008781.1 KEGG: ade:Adeh_0285 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; NAD+ synthetase 3960429 4688257 Pnap_3718 Polaromonas naphthalenivorans CJ2 NAD+ synthetase YP_983935.1 3958729 R 365044 CDS YP_983936.1 121606607 4687756 complement(3960443..3961636) 1 NC_008781.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 3961636 4687756 Pnap_3719 Polaromonas naphthalenivorans CJ2 nicotinate phosphoribosyltransferase YP_983936.1 3960443 R 365044 CDS YP_983937.1 121606608 4687683 complement(3961670..3962551) 1 NC_008781.1 KEGG: rpb:RPB_2359 hypothetical protein; hypothetical protein 3962551 4687683 Pnap_3720 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983937.1 3961670 R 365044 CDS YP_983938.1 121606609 4688436 3962683..3963375 1 NC_008781.1 PFAM: NUDIX hydrolase; KEGG: hch:HCH_06996 ADP-ribose pyrophosphatase; NUDIX hydrolase 3963375 4688436 Pnap_3721 Polaromonas naphthalenivorans CJ2 NUDIX hydrolase YP_983938.1 3962683 D 365044 CDS YP_983939.1 121606610 4687590 3963467..3964285 1 NC_008781.1 PFAM: SEC-C motif domain protein; KEGG: pol:Bpro_4482 sec-C motif; SecC motif-containing protein 3964285 4687590 Pnap_3722 Polaromonas naphthalenivorans CJ2 SecC motif-containing protein YP_983939.1 3963467 D 365044 CDS YP_983940.1 121606611 4686849 complement(3964419..3964844) 1 NC_008781.1 hypothetical protein 3964844 4686849 Pnap_3723 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983940.1 3964419 R 365044 CDS YP_983941.1 121606612 4687258 3965172..3966116 1 NC_008781.1 KEGG: xom:XOO_3993 ISXo7 transposase; ISXo7 transposase 3966116 4687258 Pnap_3724 Polaromonas naphthalenivorans CJ2 ISXo7 transposase YP_983941.1 3965172 D 365044 CDS YP_983942.1 121606613 4687216 complement(3966149..3966787) 1 NC_008781.1 KEGG: dar:Daro_0912 hypothetical protein; hypothetical protein 3966787 4687216 Pnap_3725 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983942.1 3966149 R 365044 CDS YP_983943.1 121606614 4686785 3967045..3968538 1 NC_008781.1 PFAM: Methyltransferase type 12; KEGG: rme:Rmet_2952 MCP methyltransferase, CheR-type; type 12 methyltransferase 3968538 4686785 Pnap_3726 Polaromonas naphthalenivorans CJ2 type 12 methyltransferase YP_983943.1 3967045 D 365044 CDS YP_983944.1 121606615 4686684 3968535..3969872 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rso:RSc2736 transmembrane sensor histidine kinase transcription regulator protein; integral membrane sensor signal transduction histidine kinase 3969872 4686684 Pnap_3727 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_983944.1 3968535 D 365044 CDS YP_983945.1 121606616 4686905 3969886..3971073 1 NC_008781.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rso:RSc2737 two component response regulator transcription regulator protein; response regulator receiver sensor signal transduction histidine kinase 3971073 4686905 Pnap_3728 Polaromonas naphthalenivorans CJ2 response regulator receiver sensor signal transduction histidine kinase YP_983945.1 3969886 D 365044 CDS YP_983946.1 121606617 4686231 3971077..3972048 1 NC_008781.1 PFAM: response regulator receiver; KEGG: reu:Reut_A2812 response regulator receiver; response regulator receiver protein 3972048 4686231 Pnap_3729 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_983946.1 3971077 D 365044 CDS YP_983947.1 121606618 4688231 complement(3972052..3972567) 1 NC_008781.1 KEGG: pol:Bpro_4477 hypothetical protein; hypothetical protein 3972567 4688231 Pnap_3730 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983947.1 3972052 R 365044 CDS YP_983948.1 121606619 4689565 3972724..3974526 1 NC_008781.1 KEGG: mfa:Mfla_1491 arsenite-activated ATPase (ArsA); TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase subunit ArsA 3974526 4689565 Pnap_3731 Polaromonas naphthalenivorans CJ2 arsenite-activated ATPase subunit ArsA YP_983948.1 3972724 D 365044 CDS YP_983949.1 121606620 4689769 3975145..3975963 1 NC_008781.1 PFAM: restriction endonuclease; KEGG: gme:Gmet_1797 DNA topoisomerase I:restriction endonuclease; restriction endonuclease 3975963 4689769 Pnap_3732 Polaromonas naphthalenivorans CJ2 restriction endonuclease YP_983949.1 3975145 D 365044 CDS YP_983950.1 121606621 4689338 3976150..3976341 1 NC_008781.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 3976341 4689338 Pnap_3733 Polaromonas naphthalenivorans CJ2 4-oxalocrotonate tautomerase YP_983950.1 3976150 D 365044 CDS YP_983951.1 121606622 4688706 3976376..3977173 1 NC_008781.1 PFAM: glutamine amidotransferase, class-II; KEGG: pol:Bpro_4539 glutamine amidotransferase, class-II; class-II glutamine amidotransferase 3977173 4688706 Pnap_3734 Polaromonas naphthalenivorans CJ2 class-II glutamine amidotransferase YP_983951.1 3976376 D 365044 CDS YP_983952.1 121606623 4686771 3977368..3978606 1 NC_008781.1 KEGG: bxe:Bxe_A2968 hypothetical protein; hypothetical protein 3978606 4686771 Pnap_3735 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983952.1 3977368 D 365044 CDS YP_983953.1 121606624 4686067 complement(3978626..3979579) 1 NC_008781.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3979579 4686067 Pnap_3736 Polaromonas naphthalenivorans CJ2 glutathione synthetase YP_983953.1 3978626 R 365044 CDS YP_983954.1 121606625 4686421 3980043..3981428 1 NC_008781.1 PFAM: zinc finger, SWIM domain protein; KEGG: hch:HCH_05567 protein containing SWIM Zn-chelating domain; zinc finger SWIM domain-containing protein 3981428 4686421 Pnap_3737 Polaromonas naphthalenivorans CJ2 zinc finger SWIM domain-containing protein YP_983954.1 3980043 D 365044 CDS YP_983955.1 121606626 4686503 3981425..3983011 1 NC_008781.1 KEGG: sma:SAV3459 hypothetical protein; hypothetical protein 3983011 4686503 Pnap_3738 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983955.1 3981425 D 365044 CDS YP_983956.1 121606627 4686527 3983014..3984111 1 NC_008781.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: hch:HCH_05565 MoxR-like ATPase; ATPase 3984111 4686527 Pnap_3739 Polaromonas naphthalenivorans CJ2 ATPase YP_983956.1 3983014 D 365044 CDS YP_983957.1 121606628 4686206 3984108..3986549 1 NC_008781.1 KEGG: hch:HCH_05564 hypothetical protein; hypothetical protein 3986549 4686206 Pnap_3740 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983957.1 3984108 D 365044 CDS YP_983958.1 121606629 4686606 3986657..3987010 1 NC_008781.1 KEGG: plu:plu3717 hypothetical protein; hypothetical protein 3987010 4686606 Pnap_3741 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983958.1 3986657 D 365044 CDS YP_983959.1 121606630 4686226 3987311..3988522 1 NC_008781.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: hch:HCH_05563 hypothetical protein; VWA containing CoxE family protein 3988522 4686226 Pnap_3742 Polaromonas naphthalenivorans CJ2 VWA containing CoxE family protein YP_983959.1 3987311 D 365044 CDS YP_983960.1 121606631 4686234 3988633..3989094 1 NC_008781.1 hypothetical protein 3989094 4686234 Pnap_3743 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983960.1 3988633 D 365044 CDS YP_983961.1 121606632 4687182 3989113..3989757 1 NC_008781.1 PFAM: Negative transcriptional regulator; KEGG: dar:Daro_0091 negative transcriptional regulator; FMN-binding negative transcriptional regulator 3989757 4687182 Pnap_3744 Polaromonas naphthalenivorans CJ2 FMN-binding negative transcriptional regulator YP_983961.1 3989113 D 365044 CDS YP_983962.1 121606633 4687384 complement(3989770..3990381) 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_1486 two component transcriptional regulator, LuxR family; response regulator receiver protein 3990381 4687384 Pnap_3745 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_983962.1 3989770 R 365044 CDS YP_983963.1 121606634 4687390 complement(3990405..3992384) 1 NC_008781.1 KEGG: rfr:Rfer_1485 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 3992384 4687390 Pnap_3746 Polaromonas naphthalenivorans CJ2 multi-sensor signal transduction histidine kinase YP_983963.1 3990405 R 365044 CDS YP_983964.1 121606635 4687220 3992400..3993464 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_1484 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 3993464 4687220 Pnap_3747 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctP YP_983964.1 3992400 D 365044 CDS YP_983965.1 121606636 4687946 3993618..3994964 1 NC_008781.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3994964 4687946 Pnap_3748 Polaromonas naphthalenivorans CJ2 C4-dicarboxylate transporter DctA YP_983965.1 3993618 D 365044 CDS YP_983966.1 121606637 4688111 complement(3995086..3996954) 1 NC_008781.1 PFAM: K+ potassium transporter; KEGG: pol:Bpro_4582 K+ potassium transporter; K+ potassium transporter 3996954 4688111 Pnap_3749 Polaromonas naphthalenivorans CJ2 K+ potassium transporter YP_983966.1 3995086 R 365044 CDS YP_983967.1 121606638 4688150 complement(3997270..3998565) 1 NC_008781.1 TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_4583 glutamate--cysteine ligase GshA; glutamate--cysteine ligase 3998565 4688150 Pnap_3750 Polaromonas naphthalenivorans CJ2 glutamate--cysteine ligase YP_983967.1 3997270 R 365044 CDS YP_983968.1 121606639 4688222 complement(3998795..4000087) 1 NC_008781.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 4000087 proA 4688222 proA Polaromonas naphthalenivorans CJ2 gamma-glutamyl phosphate reductase YP_983968.1 3998795 R 365044 CDS YP_983969.1 121606640 4688748 complement(4000110..4000652) 1 NC_008781.1 KEGG: pol:Bpro_4585 hypothetical protein; hypothetical protein 4000652 4688748 Pnap_3752 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983969.1 4000110 R 365044 CDS YP_983970.1 121606641 4688939 complement(4000750..4001154) 1 NC_008781.1 KEGG: rfr:Rfer_2344 hypothetical protein; hypothetical protein 4001154 4688939 Pnap_3753 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983970.1 4000750 R 365044 CDS YP_983971.1 121606642 4689404 complement(4001219..4001881) 1 NC_008781.1 PFAM: nitroreductase; KEGG: pol:Bpro_4587 nitroreductase; nitroreductase 4001881 4689404 Pnap_3754 Polaromonas naphthalenivorans CJ2 nitroreductase YP_983971.1 4001219 R 365044 CDS YP_983972.1 121606643 4689486 complement(4001932..4005486) 1 NC_008781.1 KEGG: pol:Bpro_4588 ribonucleoside reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit, N terminal domain protein; SMART: Hedgehog/intein hint domain protein; ribonucleoside-diphosphate reductase 4005486 4689486 Pnap_3755 Polaromonas naphthalenivorans CJ2 ribonucleoside-diphosphate reductase YP_983972.1 4001932 R 365044 CDS YP_983973.1 121606644 4689231 complement(4005777..4006469) 1 NC_008781.1 PFAM: carbonic anhydrase; KEGG: pol:Bpro_4590 carbonate dehydratase; carbonate dehydratase 4006469 4689231 Pnap_3756 Polaromonas naphthalenivorans CJ2 carbonate dehydratase YP_983973.1 4005777 R 365044 CDS YP_983974.1 121606645 4689546 complement(4006466..4007314) 1 NC_008781.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_4591 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 4007314 4689546 Pnap_3757 Polaromonas naphthalenivorans CJ2 PpiC-type peptidyl-prolyl cis-trans isomerase YP_983974.1 4006466 R 365044 CDS YP_983975.1 121606646 4689272 complement(4007311..4008105) 1 NC_008781.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: rfr:Rfer_2795 respiratory nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma 4008105 4689272 Pnap_3758 Polaromonas naphthalenivorans CJ2 respiratory nitrate reductase subunit gamma YP_983975.1 4007311 R 365044 CDS YP_983976.1 121606647 4689615 complement(4008102..4008809) 1 NC_008781.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: pol:Bpro_4593 nitrate reductase molybdenum cofactor assembly chaperone; nitrate reductase molybdenum cofactor assembly chaperone 4008809 4689615 Pnap_3759 Polaromonas naphthalenivorans CJ2 nitrate reductase molybdenum cofactor assembly chaperone YP_983976.1 4008102 R 365044 CDS YP_983977.1 121606648 4690062 complement(4008813..4010345) 1 NC_008781.1 TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4594 nitrate reductase, beta subunit; nitrate reductase subunit beta 4010345 4690062 Pnap_3760 Polaromonas naphthalenivorans CJ2 nitrate reductase subunit beta YP_983977.1 4008813 R 365044 CDS YP_983978.1 121606649 4690180 complement(4010342..4014172) 1 NC_008781.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pol:Bpro_4595 nitrate reductase, alpha subunit; nitrate reductase subunit alpha 4014172 4690180 Pnap_3761 Polaromonas naphthalenivorans CJ2 nitrate reductase subunit alpha YP_983978.1 4010342 R 365044 CDS YP_983979.1 121606650 4689930 complement(4014217..4015884) 1 NC_008781.1 KEGG: pol:Bpro_4596 nitrate/nitrite antiporter; nitrate/nitrite antiporter 4015884 4689930 Pnap_3762 Polaromonas naphthalenivorans CJ2 nitrate/nitrite antiporter YP_983979.1 4014217 R 365044 CDS YP_983980.1 121606651 4689748 complement(4015913..4017166) 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4597 major facilitator superfamily MFS_1; major facilitator superfamily transporter 4017166 4689748 Pnap_3763 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_983980.1 4015913 R 365044 CDS YP_983981.1 121606652 4689682 complement(4017350..4018048) 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_4598 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4018048 4689682 Pnap_3764 Polaromonas naphthalenivorans CJ2 two component LuxR family transcriptional regulator YP_983981.1 4017350 R 365044 CDS YP_983982.1 121606653 4689491 complement(4018199..4020115) 1 NC_008781.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_4599 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; multi-sensor signal transduction histidine kinase 4020115 4689491 Pnap_3765 Polaromonas naphthalenivorans CJ2 multi-sensor signal transduction histidine kinase YP_983982.1 4018199 R 365044 CDS YP_983983.1 121606654 4689343 4020475..4020720 1 NC_008781.1 hypothetical protein 4020720 4689343 Pnap_3766 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983983.1 4020475 D 365044 CDS YP_983984.1 121606655 4688969 complement(4020794..4021591) 1 NC_008781.1 hypothetical protein 4021591 4688969 Pnap_3767 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983984.1 4020794 R 365044 CDS YP_983985.1 121606656 4686277 4021683..4021886 1 NC_008781.1 KEGG: pol:Bpro_4831 integrase; integrase 4021886 4686277 Pnap_3768 Polaromonas naphthalenivorans CJ2 integrase YP_983985.1 4021683 D 365044 CDS YP_983986.1 121606657 4687748 complement(4022153..4023256) 1 NC_008781.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 4023256 holA 4687748 holA Polaromonas naphthalenivorans CJ2 DNA polymerase III subunit delta YP_983986.1 4022153 R 365044 CDS YP_983987.1 121606658 4687922 complement(4023280..4023705) 1 NC_008781.1 PFAM: regulatory protein, AsnC/Lrp family; Helix-turn-helix, type 11 domain protein; KEGG: pol:Bpro_0400 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4023705 4687922 Pnap_3770 Polaromonas naphthalenivorans CJ2 AsnC family transcriptional regulator YP_983987.1 4023280 R 365044 CDS YP_983988.1 121606659 4687762 4023833..4024930 1 NC_008781.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 4024930 4687762 Pnap_3771 Polaromonas naphthalenivorans CJ2 ornithine cyclodeaminase YP_983988.1 4023833 D 365044 CDS YP_983989.1 121606660 4687648 4024973..4025890 1 NC_008781.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pol:Bpro_4603 arginase; arginase 4025890 4687648 Pnap_3772 Polaromonas naphthalenivorans CJ2 arginase YP_983989.1 4024973 D 365044 CDS YP_983990.1 121606661 4688340 complement(4025904..4026581) 1 NC_008781.1 KEGG: rfr:Rfer_1939 hypothetical protein; hypothetical protein 4026581 4688340 Pnap_3773 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983990.1 4025904 R 365044 CDS YP_983991.1 121606662 4687595 complement(4026591..4027997) 1 NC_008781.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4027997 4687595 Pnap_3774 Polaromonas naphthalenivorans CJ2 coproporphyrinogen III oxidase YP_983991.1 4026591 R 365044 CDS YP_983992.1 121606663 4687547 4028139..4028936 1 NC_008781.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_1937 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 4028936 4687547 Pnap_3775 Polaromonas naphthalenivorans CJ2 CRP/FNR family transcriptional regulator YP_983992.1 4028139 D 365044 CDS YP_983993.1 121606664 4687259 complement(4029000..4029263) 1 NC_008781.1 KEGG: rfr:Rfer_1936 hypothetical protein; hypothetical protein 4029263 4687259 Pnap_3776 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983993.1 4029000 R 365044 CDS YP_983994.1 121606665 4686866 complement(4029315..4029575) 1 NC_008781.1 KEGG: rfr:Rfer_1935 hypothetical protein; hypothetical protein 4029575 4686866 Pnap_3777 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_983994.1 4029315 R 365044 CDS YP_983995.1 121606666 4686787 complement(4029590..4031056) 1 NC_008781.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 4031056 4686787 Pnap_3778 Polaromonas naphthalenivorans CJ2 4Fe-4S ferredoxin YP_983995.1 4029590 R 365044 CDS YP_983996.1 121606667 4686707 complement(4031105..4032025) 1 NC_008781.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: rfr:Rfer_1933 cytochrome c oxidase, cbb3-type, subunit III; cbb3-type cytochrome c oxidase subunit III 4032025 4686707 Pnap_3779 Polaromonas naphthalenivorans CJ2 cbb3-type cytochrome c oxidase subunit III YP_983996.1 4031105 R 365044 CDS YP_983997.1 121606668 4686833 complement(4032059..4032205) 1 NC_008781.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: rfr:Rfer_1932 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 4032205 4686833 Pnap_3780 Polaromonas naphthalenivorans CJ2 cbb3-type cytochrome oxidase subunit YP_983997.1 4032059 R 365044 CDS YP_983998.1 121606669 4689957 complement(4032221..4032847) 1 NC_008781.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 4032847 4689957 Pnap_3781 Polaromonas naphthalenivorans CJ2 cbb3-type cytochrome c oxidase subunit II YP_983998.1 4032221 R 365044 CDS YP_983999.1 121606670 4687025 complement(4032861..4034297) 1 NC_008781.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 4034297 4687025 Pnap_3782 Polaromonas naphthalenivorans CJ2 cbb3-type cytochrome c oxidase subunit I YP_983999.1 4032861 R 365044 CDS YP_984000.1 121606671 4690033 complement(4034364..4034504) 1 NC_008781.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rfr:Rfer_1929 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 4034504 4690033 Pnap_3783 Polaromonas naphthalenivorans CJ2 cbb3-type cytochrome oxidase maturation protein YP_984000.1 4034364 R 365044 CDS YP_984001.1 121606672 4686987 complement(4034501..4036828) 1 NC_008781.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_1927 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 4036828 4686987 Pnap_3784 Polaromonas naphthalenivorans CJ2 heavy metal translocating P-type ATPase YP_984001.1 4034501 R 365044 CDS YP_984002.1 121606673 4686295 complement(4036952..4037467) 1 NC_008781.1 PFAM: Rare lipoprotein B; KEGG: pol:Bpro_4604 rare lipoprotein B; rare lipoprotein B 4037467 4686295 Pnap_3785 Polaromonas naphthalenivorans CJ2 rare lipoprotein B YP_984002.1 4036952 R 365044 CDS YP_984003.1 121606674 4686290 complement(4037492..4040158) 1 NC_008781.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 4040158 leuS 4686290 leuS Polaromonas naphthalenivorans CJ2 leucyl-tRNA synthetase YP_984003.1 4037492 R 365044 CDS YP_984004.1 121606675 4686272 complement(4040254..4040700) 1 NC_008781.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_4606 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 4040700 4686272 Pnap_3787 Polaromonas naphthalenivorans CJ2 biopolymer transport protein ExbD/TolR YP_984004.1 4040254 R 365044 CDS YP_984005.1 121606676 4686084 complement(4040697..4041410) 1 NC_008781.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_4607 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4041410 4686084 Pnap_3788 Polaromonas naphthalenivorans CJ2 MotA/TolQ/ExbB proton channel YP_984005.1 4040697 R 365044 CDS YP_984006.1 121606677 4686324 complement(4041418..4042233) 1 NC_008781.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 4042233 4686324 Pnap_3789 Polaromonas naphthalenivorans CJ2 dihydrodipicolinate reductase YP_984006.1 4041418 R 365044 CDS YP_984007.1 121606678 4686344 complement(4042245..4042859) 1 NC_008781.1 PFAM: SmpA/OmlA domain protein; KEGG: pol:Bpro_4609 SmpA/OmlA; SmpA/OmlA domain-containing protein 4042859 4686344 Pnap_3790 Polaromonas naphthalenivorans CJ2 SmpA/OmlA domain-containing protein YP_984007.1 4042245 R 365044 CDS YP_984008.1 121606679 4686112 4042938..4043396 1 NC_008781.1 PFAM: ferric-uptake regulator; KEGG: pol:Bpro_4610 ferric uptake regulator, FUR family; ferric uptake regulator family protein 4043396 4686112 Pnap_3791 Polaromonas naphthalenivorans CJ2 ferric uptake regulator family protein YP_984008.1 4042938 D 365044 CDS YP_984009.1 121606680 4686111 complement(4043488..4044438) 1 NC_008781.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 4044438 4686111 Pnap_3792 Polaromonas naphthalenivorans CJ2 HPr kinase/phosphorylase YP_984009.1 4043488 R 365044 CDS YP_984010.1 121606681 4686250 complement(4044467..4044940) 1 NC_008781.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: pol:Bpro_4612 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 4044940 4686250 Pnap_3793 Polaromonas naphthalenivorans CJ2 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_984010.1 4044467 R 365044 CDS YP_984011.1 121606682 4686482 complement(4045148..4045480) 1 NC_008781.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: pol:Bpro_4613 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 4045480 4686482 Pnap_3794 Polaromonas naphthalenivorans CJ2 sigma 54 modulation protein/ribosomal protein S30EA YP_984011.1 4045148 R 365044 CDS YP_984012.1 121606683 4686508 4046126..4047136 1 NC_008781.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_4615 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 4047136 4686508 Pnap_3795 Polaromonas naphthalenivorans CJ2 magnesium and cobalt transport protein CorA YP_984012.1 4046126 D 365044 CDS YP_984013.1 121606684 4686132 complement(4047198..4047974) 1 NC_008781.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 4047974 4686132 Pnap_3796 Polaromonas naphthalenivorans CJ2 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_984013.1 4047198 R 365044 CDS YP_984014.1 121606685 4686613 complement(4048063..4049763) 1 NC_008781.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4543 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4049763 4686613 Pnap_3797 Polaromonas naphthalenivorans CJ2 AMP-dependent synthetase and ligase YP_984014.1 4048063 R 365044 CDS YP_984015.1 121606686 4686571 complement(4049925..4051349) 1 NC_008781.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: pol:Bpro_4544 NAD(P) transhydrogenase, beta subunit; NAD(P) transhydrogenase subunit beta 4051349 4686571 Pnap_3798 Polaromonas naphthalenivorans CJ2 NAD(P) transhydrogenase subunit beta YP_984015.1 4049925 R 365044 CDS YP_984016.1 121606687 4686249 complement(4051346..4051681) 1 NC_008781.1 KEGG: pol:Bpro_4545 NAD(P) transhydrogenase, subunit alpha part 2; NAD(P) transhydrogenase subunit alpha part 2 4051681 4686249 Pnap_3799 Polaromonas naphthalenivorans CJ2 NAD(P) transhydrogenase subunit alpha part 2 YP_984016.1 4051346 R 365044 CDS YP_984017.1 121606688 4686750 complement(4051787..4052902) 1 NC_008781.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pol:Bpro_4546 NAD(P)(+) transhydrogenase (AB-specific); NAD(P)(+) transhydrogenase 4052902 4686750 Pnap_3800 Polaromonas naphthalenivorans CJ2 NAD(P)(+) transhydrogenase YP_984017.1 4051787 R 365044 CDS YP_984018.1 121606689 4686744 complement(4053155..4054690) 1 NC_008781.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_4547 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 4054690 4686744 Pnap_3801 Polaromonas naphthalenivorans CJ2 methylmalonate-semialdehyde dehydrogenase YP_984018.1 4053155 R 365044 CDS YP_984019.1 121606690 4687495 4054805..4055800 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4548 transcriptional regulator, LysR family; LysR family transcriptional regulator 4055800 4687495 Pnap_3802 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_984019.1 4054805 D 365044 CDS YP_984020.1 121606691 4686768 4055815..4056342 1 NC_008781.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_4549 NUDIX hydrolase; NUDIX hydrolase 4056342 4686768 Pnap_3803 Polaromonas naphthalenivorans CJ2 NUDIX hydrolase YP_984020.1 4055815 D 365044 CDS YP_984021.1 121606692 4686776 complement(4056394..4056654) 1 NC_008781.1 hypothetical protein 4056654 4686776 Pnap_3804 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984021.1 4056394 R 365044 CDS YP_984022.1 121606693 4686782 4056671..4058794 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; protein of unknown function DUF453; KEGG: pol:Bpro_4551 protein of unknown function DUF453; hypothetical protein 4058794 4686782 Pnap_3805 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984022.1 4056671 D 365044 CDS YP_984023.1 121606694 4686767 complement(4058809..4059732) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4552 transcriptional regulator, LysR family; LysR family transcriptional regulator 4059732 4686767 Pnap_3806 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_984023.1 4058809 R 365044 CDS YP_984024.1 121606695 4686783 4059845..4060870 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4553 uncharacterized protein UPF0065; hypothetical protein 4060870 4686783 Pnap_3807 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984024.1 4059845 D 365044 CDS YP_984025.1 121606696 4686784 4060897..4061754 1 NC_008781.1 KEGG: pol:Bpro_4554 hypothetical protein; hypothetical protein 4061754 4686784 Pnap_3808 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984025.1 4060897 D 365044 CDS YP_984026.1 121606697 4686793 4061776..4062957 1 NC_008781.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4555 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 4062957 4686793 Pnap_3809 Polaromonas naphthalenivorans CJ2 L-carnitine dehydratase/bile acid-inducible protein F YP_984026.1 4061776 D 365044 CDS YP_984027.1 121606698 4686792 4062960..4063799 1 NC_008781.1 PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_4556 HpcH/HpaI aldolase; HpcH/HpaI aldolase 4063799 4686792 Pnap_3810 Polaromonas naphthalenivorans CJ2 HpcH/HpaI aldolase YP_984027.1 4062960 D 365044 CDS YP_984028.1 121606699 4686791 4063824..4065173 1 NC_008781.1 PFAM: fumarate lyase; KEGG: pol:Bpro_4557 fumarate lyase; fumarate lyase 4065173 4686791 Pnap_3811 Polaromonas naphthalenivorans CJ2 fumarate lyase YP_984028.1 4063824 D 365044 CDS YP_984029.1 121606700 4686842 4065219..4066301 1 NC_008781.1 PFAM: porin, Gram-negative type; KEGG: pol:Bpro_4558 porin, gram-negative type; porin 4066301 4686842 Pnap_3812 Polaromonas naphthalenivorans CJ2 porin YP_984029.1 4065219 D 365044 CDS YP_984030.1 121606701 4687334 complement(4066329..4067306) 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein 4067306 4687334 Pnap_3813 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984030.1 4066329 R 365044 CDS YP_984031.1 121606702 4687807 complement(4067336..4068520) 1 NC_008781.1 TIGRFAM: CitB domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3489 citrate utilization protein B; CitB domain-containing protein 4068520 4687807 Pnap_3814 Polaromonas naphthalenivorans CJ2 CitB domain-containing protein YP_984031.1 4067336 R 365044 CDS YP_984032.1 121606703 4687467 complement(4068507..4069916) 1 NC_008781.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 4069916 4687467 Pnap_3815 Polaromonas naphthalenivorans CJ2 tricarballylate dehydrogenase YP_984032.1 4068507 R 365044 CDS YP_984033.1 121606704 4687532 complement(4070000..4070932) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0637 transcriptional regulator, LysR family; LysR family transcriptional regulator 4070932 4687532 Pnap_3816 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_984033.1 4070000 R 365044 CDS YP_984034.1 121606705 4687533 4070983..4072167 1 NC_008781.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 4072167 mnmA 4687533 mnmA Polaromonas naphthalenivorans CJ2 tRNA-specific 2-thiouridylase MnmA YP_984034.1 4070983 D 365044 CDS YP_984035.1 121606706 4687525 complement(4072254..4073729) 1 NC_008781.1 PFAM: MltA-interacting MipA family protein; KEGG: pol:Bpro_4564 MltA-interacting MipA; MltA-interacting MipA family protein 4073729 4687525 Pnap_3818 Polaromonas naphthalenivorans CJ2 MltA-interacting MipA family protein YP_984035.1 4072254 R 365044 CDS YP_984036.1 121606707 4687557 complement(4073859..4074386) 1 NC_008781.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pol:Bpro_4565 single-strand binding protein; ssDNA-binding protein 4074386 4687557 Pnap_3819 Polaromonas naphthalenivorans CJ2 ssDNA-binding protein YP_984036.1 4073859 R 365044 CDS YP_984037.1 121606708 4687548 4074516..4075880 1 NC_008781.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: rfr:Rfer_1155 Cl-channel, voltage gated; Cl- channel voltage-gated family protein 4075880 4687548 Pnap_3820 Polaromonas naphthalenivorans CJ2 Cl- channel voltage-gated family protein YP_984037.1 4074516 D 365044 CDS YP_984038.1 121606709 4687559 complement(4075885..4077087) 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4567 major facilitator superfamily MFS_1; major facilitator superfamily transporter 4077087 4687559 Pnap_3821 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_984038.1 4075885 R 365044 CDS YP_984039.1 121606710 4687560 complement(4077258..4078112) 1 NC_008781.1 KEGG: rme:Rmet_3878 hypothetical protein; hypothetical protein 4078112 4687560 Pnap_3822 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984039.1 4077258 R 365044 CDS YP_984040.1 121606711 4687566 complement(4078125..4078466) 1 NC_008781.1 KEGG: mca:MCA0458 cysteine rich repeat domain protein, putative; hypothetical protein 4078466 4687566 Pnap_3823 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984040.1 4078125 R 365044 CDS YP_984041.1 121606712 4687572 complement(4078463..4078744) 1 NC_008781.1 hypothetical protein 4078744 4687572 Pnap_3824 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984041.1 4078463 R 365044 CDS YP_984042.1 121606713 4687562 4078842..4079609 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0208 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4079609 4687562 Pnap_3825 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_984042.1 4078842 D 365044 CDS YP_984043.1 121606714 4688414 4079606..4080913 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: bps:BPSL1037 putative two-component system, sensor kinase; integral membrane sensor signal transduction histidine kinase 4080913 4688414 Pnap_3826 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_984043.1 4079606 D 365044 CDS YP_984044.1 121606715 4687707 4080983..4084057 1 NC_008781.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pol:Bpro_4568 excinuclease ABC, A subunit; excinuclease ABC subunit A 4084057 4687707 Pnap_3827 Polaromonas naphthalenivorans CJ2 excinuclease ABC subunit A YP_984044.1 4080983 D 365044 CDS YP_984045.1 121606716 4687976 4084139..4085074 1 NC_008781.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: yps:YPTB2498 possible DMT superfamliy, DME family drug/metabolite exporter; hypothetical protein 4085074 4687976 Pnap_3828 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984045.1 4084139 D 365044 CDS YP_984046.1 121606717 4687965 4085284..4086993 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMc01525 putative dipeptide binding periplasmic protein; extracellular solute-binding protein 4086993 4687965 Pnap_3829 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_984046.1 4085284 D 365044 CDS YP_984047.1 121606718 4687757 4087011..4088105 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr5514 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4088105 4687757 Pnap_3830 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_984047.1 4087011 D 365044 CDS YP_984048.1 121606719 4687760 4088102..4089028 1 NC_008781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_870 putative dipeptide transport system permease ABC transporter protein; binding-protein-dependent transport system inner membrane protein 4089028 4687760 Pnap_3831 Polaromonas naphthalenivorans CJ2 binding-protein-dependent transport system inner membrane protein YP_984048.1 4088102 D 365044 CDS YP_984049.1 121606720 4688056 4089025..4089867 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc01528 putative dipeptide transport ATP-binding ABC transporter protein; ABC transporter-like protein 4089867 4688056 Pnap_3832 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_984049.1 4089025 D 365044 CDS YP_984050.1 121606721 4687801 4089864..4090637 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mlr5517 ABC transporter, ATP-binding protein; ABC transporter-like protein 4090637 4687801 Pnap_3833 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_984050.1 4089864 D 365044 CDS YP_984051.1 121606722 4688960 complement(4090725..4091747) 1 NC_008781.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bja:bll6212 transcriptional regulatory protein; helix-turn-helix domain-containing protein 4091747 4688960 Pnap_3834 Polaromonas naphthalenivorans CJ2 helix-turn-helix domain-containing protein YP_984051.1 4090725 R 365044 CDS YP_984052.1 121606723 4687810 4091930..4093381 1 NC_008781.1 PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_I0706 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 4093381 4687810 Pnap_3835 Polaromonas naphthalenivorans CJ2 aldehyde dehydrogenase YP_984052.1 4091930 D 365044 CDS YP_984053.1 121606724 4688121 4093420..4093740 1 NC_008781.1 KEGG: eba:ebB97 probable p-cresol methylhydroxylase subunit; putative p-cresol methylhydroxylase subunit 4093740 4688121 Pnap_3836 Polaromonas naphthalenivorans CJ2 putative p-cresol methylhydroxylase subunit YP_984053.1 4093420 D 365044 CDS YP_984054.1 121606725 4687811 4093754..4094284 1 NC_008781.1 KEGG: noc:Noc_2407 hypothetical protein; hypothetical protein 4094284 4687811 Pnap_3837 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984054.1 4093754 D 365044 CDS YP_984055.1 121606726 4687822 4094298..4095851 1 NC_008781.1 PFAM: FAD linked oxidase domain protein; KEGG: eba:ebA3165 probable p-cresol methylhydroxylase subunit; FAD linked oxidase domain-containing protein 4095851 4687822 Pnap_3838 Polaromonas naphthalenivorans CJ2 FAD linked oxidase domain-containing protein YP_984055.1 4094298 D 365044 CDS YP_984056.1 121606727 4687839 4095881..4096777 1 NC_008781.1 KEGG: eba:ebA5757 conserved hypothetical protein, possibly involved in regulation of phenolics degradation; regulation of phenolics degradation protein 4096777 4687839 Pnap_3839 Polaromonas naphthalenivorans CJ2 regulation of phenolics degradation protein YP_984056.1 4095881 D 365044 CDS YP_984057.1 121606728 4687841 4096811..4097818 1 NC_008781.1 PFAM: peptidase M19, renal dipeptidase; KEGG: hypothetical protein; peptidase M19 4097818 4687841 Pnap_3840 Polaromonas naphthalenivorans CJ2 peptidase M19 YP_984057.1 4096811 D 365044 CDS YP_984058.1 121606729 4687827 4097851..4098300 1 NC_008781.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_4578 thioesterase superfamily; thioesterase superfamily protein 4098300 4687827 Pnap_3841 Polaromonas naphthalenivorans CJ2 thioesterase superfamily protein YP_984058.1 4097851 D 365044 CDS YP_984059.1 121606730 4687844 4098692..4100641 1 NC_008781.1 KEGG: bpm:BURPS1710b_A1122 putative outer membrane protein; putative outer membrane protein 4100641 4687844 Pnap_3842 Polaromonas naphthalenivorans CJ2 putative outer membrane protein YP_984059.1 4098692 D 365044 CDS YP_984060.1 121606731 4687849 complement(4100700..4101548) 1 NC_008781.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 4101548 pyrF 4687849 pyrF Polaromonas naphthalenivorans CJ2 orotidine 5'-phosphate decarboxylase YP_984060.1 4100700 R 365044 CDS YP_984061.1 121606732 4688206 complement(4101573..4102373) 1 NC_008781.1 KEGG: pol:Bpro_4619 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 4102373 4688206 Pnap_3844 Polaromonas naphthalenivorans CJ2 phage SPO1 DNA polymerase-like protein YP_984061.1 4101573 R 365044 CDS YP_984062.1 121606733 4687890 complement(4102390..4102884) 1 NC_008781.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4620 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 4102884 4687890 Pnap_3845 Polaromonas naphthalenivorans CJ2 ribosomal-protein-alanine acetyltransferase YP_984062.1 4102390 R 365044 CDS YP_984063.1 121606734 4688176 complement(4102891..4103670) 1 NC_008781.1 PFAM: peptidase M22, glycoprotease; KEGG: pol:Bpro_4621 peptidase M22, glycoprotease; peptidase M22, glycoprotease 4103670 4688176 Pnap_3846 Polaromonas naphthalenivorans CJ2 peptidase M22, glycoprotease YP_984063.1 4102891 R 365044 CDS YP_984064.1 121606735 4688216 4103738..4105324 1 NC_008781.1 KEGG: pol:Bpro_4622 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 4105324 4688216 Pnap_3847 Polaromonas naphthalenivorans CJ2 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_984064.1 4103738 D 365044 CDS YP_984065.1 121606736 4687916 4105661..4106545 1 NC_008781.1 PFAM: transglutaminase domain protein; KEGG: rpc:RPC_0968 transglutaminase-like; transglutaminase domain-containing protein 4106545 4687916 Pnap_3848 Polaromonas naphthalenivorans CJ2 transglutaminase domain-containing protein YP_984065.1 4105661 D 365044 CDS YP_984066.1 121606737 4688236 4106542..4107258 1 NC_008781.1 KEGG: eba:ebA6983 predicted N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 4107258 4688236 Pnap_3849 Polaromonas naphthalenivorans CJ2 N-formylglutamate amidohydrolase YP_984066.1 4106542 D 365044 CDS YP_984067.1 121606738 4688240 4107341..4107685 1 NC_008781.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; KEGG: pol:Bpro_0099 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 4107685 4688240 Pnap_3850 Polaromonas naphthalenivorans CJ2 alkylphosphonate utilization operon protein PhnA YP_984067.1 4107341 D 365044 CDS YP_984068.1 121606739 4687917 4107759..4108028 1 NC_008781.1 KEGG: rfr:Rfer_3825 hypothetical protein; hypothetical protein 4108028 4687917 Pnap_3851 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984068.1 4107759 D 365044 CDS YP_984069.1 121606740 4688242 complement(4108048..4109145) 1 NC_008781.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_C1356 alcohol dehydrogenase (Zn-dependent); alcohol dehydrogenase 4109145 4688242 Pnap_3852 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_984069.1 4108048 R 365044 CDS YP_984070.1 121606741 4688246 4109304..4109633 1 NC_008781.1 KEGG: rfr:Rfer_3307 hypothetical protein; hypothetical protein 4109633 4688246 Pnap_3853 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984070.1 4109304 D 365044 CDS YP_984071.1 121606742 4688269 4109660..4110493 1 NC_008781.1 PFAM: iron permease FTR1; KEGG: rfr:Rfer_3306 iron permease FTR1; iron permease FTR1 4110493 4688269 Pnap_3854 Polaromonas naphthalenivorans CJ2 iron permease FTR1 YP_984071.1 4109660 D 365044 CDS YP_984072.1 121606743 4688286 complement(4110468..4111223) 1 NC_008781.1 KEGG: rfr:Rfer_0328 hypothetical protein; hypothetical protein 4111223 4688286 Pnap_3855 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984072.1 4110468 R 365044 CDS YP_984073.1 121606744 4688288 4111357..4112175 1 NC_008781.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat; Sel1 domain-containing protein 4112175 4688288 Pnap_3856 Polaromonas naphthalenivorans CJ2 Sel1 domain-containing protein YP_984073.1 4111357 D 365044 CDS YP_984074.1 121606745 4688291 complement(4112235..4113479) 1 NC_008781.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: pol:Bpro_2065 esterase, PHB depolymerase; PHB depolymerase family esterase 4113479 4688291 Pnap_3857 Polaromonas naphthalenivorans CJ2 PHB depolymerase family esterase YP_984074.1 4112235 R 365044 CDS YP_984075.1 121606746 4688292 complement(4113538..4113960) 1 NC_008781.1 KEGG: pol:Bpro_2066 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domain; CopG/Arc/MetJ family transcriptional regulator 4113960 4688292 Pnap_3858 Polaromonas naphthalenivorans CJ2 CopG/Arc/MetJ family transcriptional regulator YP_984075.1 4113538 R 365044 CDS YP_984076.1 121606747 4688297 complement(4114131..4114364) 1 NC_008781.1 PFAM: SlyX family protein; KEGG: bbr:BB1266 SlyX protein; SlyX family protein 4114364 4688297 Pnap_3859 Polaromonas naphthalenivorans CJ2 SlyX family protein YP_984076.1 4114131 R 365044 CDS YP_984077.1 121606748 4688303 4114468..4115613 1 NC_008781.1 PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_0371 extracellular ligand-binding receptor; extracellular ligand-binding receptor 4115613 4688303 Pnap_3860 Polaromonas naphthalenivorans CJ2 extracellular ligand-binding receptor YP_984077.1 4114468 D 365044 CDS YP_984078.1 121606749 4688311 complement(4115633..4116616) 1 NC_008781.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_4625 SUA5/YciO/YrdC/YwlC; Sua5/YciO/YrdC/YwlC family protein 4116616 4688311 Pnap_3861 Polaromonas naphthalenivorans CJ2 Sua5/YciO/YrdC/YwlC family protein YP_984078.1 4115633 R 365044 CDS YP_984079.1 121606750 4688438 complement(4116616..4117848) 1 NC_008781.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase 4117848 4688438 Pnap_3862 Polaromonas naphthalenivorans CJ2 phosphoribosylaminoimidazole carboxylase ATPase YP_984079.1 4116616 R 365044 CDS YP_984080.1 121606751 4690140 complement(4117845..4118354) 1 NC_008781.1 KEGG: pol:Bpro_4627 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 4118354 4690140 Pnap_3863 Polaromonas naphthalenivorans CJ2 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_984080.1 4117845 R 365044 CDS YP_984081.1 121606752 4686271 4118559..4119446 1 NC_008781.1 PFAM: Thioredoxin domain; KEGG: pol:Bpro_4628 thioredoxin; thioredoxin domain-containing protein 4119446 4686271 Pnap_3864 Polaromonas naphthalenivorans CJ2 thioredoxin domain-containing protein YP_984081.1 4118559 D 365044 CDS YP_984082.1 121606753 4688360 complement(4119443..4119838) 1 NC_008781.1 KEGG: rme:Rmet_0309 hypothetical protein; hypothetical protein 4119838 4688360 Pnap_3865 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984082.1 4119443 R 365044 CDS YP_984083.1 121606754 4688869 complement(4119917..4120498) 1 NC_008781.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bms:BR1197 ThiJ/PfpI family protein; PfpI family intracellular peptidase 4120498 4688869 Pnap_3866 Polaromonas naphthalenivorans CJ2 PfpI family intracellular peptidase YP_984083.1 4119917 R 365044 CDS YP_984084.1 121606755 4688668 complement(4120614..4120850) 1 NC_008781.1 KEGG: hch:HCH_00932 hypothetical protein; hypothetical protein 4120850 4688668 Pnap_3867 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984084.1 4120614 R 365044 CDS YP_984085.1 121606756 4688953 complement(4120877..4121794) 1 NC_008781.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 4121794 4688953 Pnap_3868 Polaromonas naphthalenivorans CJ2 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_984085.1 4120877 R 365044 CDS YP_984086.1 121606757 4689729 complement(4121897..4122961) 1 NC_008781.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 4122961 4689729 Pnap_3869 Polaromonas naphthalenivorans CJ2 fructose-1,6-bisphosphate aldolase YP_984086.1 4121897 R 365044 CDS YP_984087.1 121606758 4688905 complement(4123071..4124480) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4631 histidine kinase; histidine kinase 4124480 4688905 Pnap_3870 Polaromonas naphthalenivorans CJ2 histidine kinase YP_984087.1 4123071 R 365044 CDS YP_984088.1 121606759 4688968 complement(4124477..4125169) 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4632 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4125169 4688968 Pnap_3871 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_984088.1 4124477 R 365044 CDS YP_984089.1 121606760 4689005 4125238..4126041 1 NC_008781.1 KEGG: pol:Bpro_4633 PAP2 (acid phosphatase) superfamily protein-like; PAP2 (acid phosphatase) superfamily protein-like protein 4126041 4689005 Pnap_3872 Polaromonas naphthalenivorans CJ2 PAP2 (acid phosphatase) superfamily protein-like protein YP_984089.1 4125238 D 365044 CDS YP_984090.1 121606761 4689006 complement(4126076..4127509) 1 NC_008781.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4127509 4689006 Pnap_3873 Polaromonas naphthalenivorans CJ2 pyruvate kinase YP_984090.1 4126076 R 365044 CDS YP_984091.1 121606762 4689003 complement(4127713..4128906) 1 NC_008781.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 4128906 pgk 4689003 pgk Polaromonas naphthalenivorans CJ2 phosphoglycerate kinase YP_984091.1 4127713 R 365044 CDS YP_984092.1 121606763 4689007 complement(4129021..4129374) 1 NC_008781.1 PFAM: branched-chain amino acid transport; KEGG: pol:Bpro_4636 branched-chain amino acid transport; branched-chain amino acid transport 4129374 4689007 Pnap_3875 Polaromonas naphthalenivorans CJ2 branched-chain amino acid transport YP_984092.1 4129021 R 365044 CDS YP_984093.1 121606764 4689051 complement(4129371..4130120) 1 NC_008781.1 PFAM: AzlC family protein; KEGG: pol:Bpro_4637 AzlC-like; AzlC family protein 4130120 4689051 Pnap_3876 Polaromonas naphthalenivorans CJ2 AzlC family protein YP_984093.1 4129371 R 365044 CDS YP_984094.1 121606765 4690189 complement(4130117..4131088) 1 NC_008781.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: pol:Bpro_4638 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 4131088 4690189 Pnap_3877 Polaromonas naphthalenivorans CJ2 methionyl-tRNA formyltransferase YP_984094.1 4130117 R 365044 CDS YP_984095.1 121606766 4689462 complement(4131156..4131677) 1 NC_008781.1 KEGG: pol:Bpro_4639 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 4131677 4689462 Pnap_3878 Polaromonas naphthalenivorans CJ2 peptide deformylase YP_984095.1 4131156 R 365044 CDS YP_984096.1 121606767 4689104 4131823..4133115 1 NC_008781.1 PFAM: Peptidoglycan-binding LysM; KEGG: pol:Bpro_4640 peptidoglycan-binding LysM; peptidoglycan-binding LysM 4133115 4689104 Pnap_3879 Polaromonas naphthalenivorans CJ2 peptidoglycan-binding LysM YP_984096.1 4131823 D 365044 CDS YP_984097.1 121606768 4689475 4133447..4134682 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bur:Bcep18194_C6989 transposase, IS605 OrfB; IS605 family transposase OrfB 4134682 4689475 Pnap_3880 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_984097.1 4133447 D 365044 CDS YP_984098.1 121606769 4689204 4134675..4135874 1 NC_008781.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pol:Bpro_4641 DNA processing protein DprA, putative; DNA protecting protein DprA 4135874 4689204 Pnap_3881 Polaromonas naphthalenivorans CJ2 DNA protecting protein DprA YP_984098.1 4134675 D 365044 CDS YP_984099.1 121606770 4689218 4135899..4136414 1 NC_008781.1 PFAM: protein of unknown function DUF494; KEGG: pol:Bpro_4642 protein of unknown function DUF494; hypothetical protein 4136414 4689218 Pnap_3882 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984099.1 4135899 D 365044 CDS YP_984100.1 121606771 4689224 complement(4136442..4138784) 1 NC_008781.1 KEGG: pol:Bpro_4643 protein of unknown function DUF1631; hypothetical protein 4138784 4689224 Pnap_3883 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984100.1 4136442 R 365044 CDS YP_984101.1 121606772 4689479 complement(4138889..4139842) 1 NC_008781.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 4139842 secF 4689479 secF Polaromonas naphthalenivorans CJ2 preprotein translocase subunit SecF YP_984101.1 4138889 R 365044 CDS YP_984102.1 121606773 4689515 complement(4139881..4141758) 1 NC_008781.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 4141758 secD 4689515 secD Polaromonas naphthalenivorans CJ2 preprotein translocase subunit SecD YP_984102.1 4139881 R 365044 CDS YP_984103.1 121606774 4689236 complement(4141849..4142130) 1 NC_008781.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pol:Bpro_4646 preprotein translocase, YajC subunit; preprotein translocase subunit YajC 4142130 4689236 Pnap_3886 Polaromonas naphthalenivorans CJ2 preprotein translocase subunit YajC YP_984103.1 4141849 R 365044 CDS YP_984104.1 121606775 4689554 complement(4142389..4146009) 1 NC_008781.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 4146009 4689554 Pnap_3887 Polaromonas naphthalenivorans CJ2 indolepyruvate ferredoxin oxidoreductase YP_984104.1 4142389 R 365044 CDS YP_984105.1 121606776 4689556 4146128..4146694 1 NC_008781.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4648 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4146694 4689556 Pnap_3888 Polaromonas naphthalenivorans CJ2 AsnC family transcriptional regulator YP_984105.1 4146128 D 365044 CDS YP_984106.1 121606777 4689571 4146742..4147170 1 NC_008781.1 hypothetical protein 4147170 4689571 Pnap_3889 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984106.1 4146742 D 365044 CDS YP_984107.1 121606778 4689641 4147498..4147833 1 NC_008781.1 KEGG: rsp:RSP_3768 hypothetical protein; hypothetical protein 4147833 4689641 Pnap_3890 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984107.1 4147498 D 365044 CDS YP_984108.1 121606779 4689285 complement(4147972..4150182) 1 NC_008781.1 PFAM: protein of unknown function DUF839; KEGG: pol:Bpro_1725 twin-arginine translocation pathway signal; hypothetical protein 4150182 4689285 Pnap_3891 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984108.1 4147972 R 365044 CDS YP_984109.1 121606780 4689655 complement(4150291..4150656) 1 NC_008781.1 KEGG: pol:Bpro_4650 hypothetical protein; hypothetical protein 4150656 4689655 Pnap_3892 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984109.1 4150291 R 365044 CDS YP_984110.1 121606781 4689701 complement(4150675..4151919) 1 NC_008781.1 PFAM: MltA domain protein; 3D domain protein; KEGG: pol:Bpro_4651 MltA; MltA domain-containing protein 4151919 4689701 Pnap_3893 Polaromonas naphthalenivorans CJ2 MltA domain-containing protein YP_984110.1 4150675 R 365044 CDS YP_984111.1 121606782 4689297 complement(4152024..4152650) 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4652 two component transcriptional regulator, LuxR family; response regulator receiver protein 4152650 4689297 Pnap_3894 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_984111.1 4152024 R 365044 CDS YP_984112.1 121606783 4689716 complement(4152652..4154748) 1 NC_008781.1 KEGG: pol:Bpro_4653 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 4154748 4689716 Pnap_3895 Polaromonas naphthalenivorans CJ2 multi-sensor signal transduction histidine kinase YP_984112.1 4152652 R 365044 CDS YP_984113.1 121606784 4690221 complement(4154753..4155559) 1 NC_008781.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_4654 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4155559 4690221 Pnap_3896 Polaromonas naphthalenivorans CJ2 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_984113.1 4154753 R 365044 CDS YP_984114.1 121606785 4689751 complement(4155562..4159701) 1 NC_008781.1 KEGG: pol:Bpro_4655 hypothetical protein; hypothetical protein 4159701 4689751 Pnap_3897 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984114.1 4155562 R 365044 CDS YP_984115.1 121606786 4689732 4159773..4162562 1 NC_008781.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: pol:Bpro_4656 glutamate-ammonia-ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 4162562 4689732 Pnap_3898 Polaromonas naphthalenivorans CJ2 (glutamate--ammonia-ligase) adenylyltransferase YP_984115.1 4159773 D 365044 CDS YP_984116.1 121606787 4689963 4162673..4163416 1 NC_008781.1 PFAM: regulatory protein, TetR; KEGG: mca:MCA1807 transcriptional regulator, TetR family; TetR family transcriptional regulator 4163416 4689963 Pnap_3899 Polaromonas naphthalenivorans CJ2 TetR family transcriptional regulator YP_984116.1 4162673 D 365044 CDS YP_984117.1 121606788 4689928 4163413..4164879 1 NC_008781.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_4106 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 4164879 4689928 Pnap_3900 Polaromonas naphthalenivorans CJ2 RND efflux system outer membrane lipoprotein YP_984117.1 4163413 D 365044 CDS YP_984118.1 121606789 4689828 4164947..4166137 1 NC_008781.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_4105 secretion protein HlyD; RND family efflux transporter MFP subunit 4166137 4689828 Pnap_3901 Polaromonas naphthalenivorans CJ2 RND family efflux transporter MFP subunit YP_984118.1 4164947 D 365044 CDS YP_984119.1 121606790 4690043 4166134..4169268 1 NC_008781.1 PFAM: acriflavin resistance protein; KEGG: dar:Daro_0459 acriflavin resistance protein; acriflavin resistance protein 4169268 4690043 Pnap_3902 Polaromonas naphthalenivorans CJ2 acriflavin resistance protein YP_984119.1 4166134 D 365044 CDS YP_984120.1 121606791 4690193 4169319..4169576 1 NC_008781.1 hypothetical protein 4169576 4690193 Pnap_3903 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984120.1 4169319 D 365044 CDS YP_984121.1 121606792 4690208 complement(4169816..4170070) 1 NC_008781.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; KEGG: ssn:SSO_2087 hypothetical protein; addiction module antitoxin 4170070 4690208 Pnap_3904 Polaromonas naphthalenivorans CJ2 addiction module antitoxin YP_984121.1 4169816 R 365044 CDS YP_984122.1 121606793 4690147 complement(4170067..4170318) 1 NC_008781.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: neu:NE0712 DUF172; prevent-host-death family protein 4170318 4690147 Pnap_3905 Polaromonas naphthalenivorans CJ2 prevent-host-death family protein YP_984122.1 4170067 R 365044 CDS YP_984123.1 121606794 4690182 complement(4170576..4171514) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cvi:CV4290 probable transcriptional regulator LysR-family; LysR family transcriptional regulator 4171514 4690182 Pnap_3906 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_984123.1 4170576 R 365044 CDS YP_984124.1 121606795 4690172 4171613..4172620 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4458 hypothetical protein; hypothetical protein 4172620 4690172 Pnap_3907 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984124.1 4171613 D 365044 CDS YP_984125.1 121606796 4690053 4172617..4173705 1 NC_008781.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2063 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 4173705 4690053 Pnap_3908 Polaromonas naphthalenivorans CJ2 iron-containing alcohol dehydrogenase YP_984125.1 4172617 D 365044 CDS YP_984126.1 121606797 4690118 4173805..4174800 1 NC_008781.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_C6140 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 4174800 4690118 Pnap_3909 Polaromonas naphthalenivorans CJ2 alcohol dehydrogenase YP_984126.1 4173805 D 365044 CDS YP_984127.1 121606798 4690104 complement(4174921..4175415) 1 NC_008781.1 TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: pol:Bpro_4657 RfaE bifunctional protein, domain II; bifunctional protein RfaE 4175415 4690104 Pnap_3910 Polaromonas naphthalenivorans CJ2 bifunctional protein RfaE YP_984127.1 4174921 R 365044 CDS YP_984128.1 121606799 4690060 complement(4175412..4176281) 1 NC_008781.1 KEGG: pol:Bpro_4658 hypothetical protein; hypothetical protein 4176281 4690060 Pnap_3911 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984128.1 4175412 R 365044 CDS YP_984129.1 121606800 4690078 4176514..4177083 1 NC_008781.1 PFAM: glutathione peroxidase; KEGG: pol:Bpro_4659 glutathione peroxidase; glutathione peroxidase 4177083 4690078 Pnap_3912 Polaromonas naphthalenivorans CJ2 glutathione peroxidase YP_984129.1 4176514 D 365044 CDS YP_984130.1 121606801 4689666 complement(4177416..4178030) 1 NC_008781.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_4661 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 4178030 4689666 Pnap_3913 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_984130.1 4177416 R 365044 CDS YP_984131.1 121606802 4687751 4178115..4179566 1 NC_008781.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4179566 4687751 Pnap_3914 Polaromonas naphthalenivorans CJ2 adenylosuccinate lyase YP_984131.1 4178115 D 365044 CDS YP_984132.1 121606803 4690031 complement(4179637..4179948) 1 NC_008781.1 KEGG: pol:Bpro_4663 hypothetical protein; hypothetical protein 4179948 4690031 Pnap_3915 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984132.1 4179637 R 365044 CDS YP_984133.1 121606804 4690054 complement(4180055..4180465) 1 NC_008781.1 PFAM: protein of unknown function DUF1289; KEGG: pol:Bpro_4664 protein of unknown function DUF1289; hypothetical protein 4180465 4690054 Pnap_3916 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984133.1 4180055 R 365044 CDS YP_984134.1 121606805 4689669 4180921..4181637 1 NC_008781.1 PFAM: Integral membrane protein TerC; KEGG: pol:Bpro_4666 integral membrane protein TerC; integral membrane protein TerC 4181637 4689669 Pnap_3917 Polaromonas naphthalenivorans CJ2 integral membrane protein TerC YP_984134.1 4180921 D 365044 CDS YP_984135.1 121606806 4689589 4181690..4182043 1 NC_008781.1 PFAM: membrane protein of unknown function; KEGG: pol:Bpro_4668 membrane protein of unknown function; hypothetical protein 4182043 4689589 Pnap_3918 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984135.1 4181690 D 365044 CDS YP_984136.1 121606807 4689646 complement(4181999..4183648) 1 NC_008781.1 PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_4669 peptidase M48, Ste24p; peptidase M48, Ste24p 4183648 4689646 Pnap_3919 Polaromonas naphthalenivorans CJ2 peptidase M48, Ste24p YP_984136.1 4181999 R 365044 CDS YP_984137.1 121606808 4689613 4183729..4184250 1 NC_008781.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: pol:Bpro_4671 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 4184250 4689613 Pnap_3920 Polaromonas naphthalenivorans CJ2 molybdenum cofactor biosynthesis protein C YP_984137.1 4183729 D 365044 CDS YP_984138.1 121606809 4689609 4184382..4185365 1 NC_008781.1 PFAM: phage integrase family protein; KEGG: mag:amb3648 integrase; phage integrase family protein 4185365 4689609 Pnap_3921 Polaromonas naphthalenivorans CJ2 phage integrase family protein YP_984138.1 4184382 D 365044 CDS YP_984139.1 121606810 4689601 complement(4185753..4186064) 1 NC_008781.1 hypothetical protein 4186064 4689601 Pnap_3922 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984139.1 4185753 R 365044 CDS YP_984140.1 121606811 4688604 4186476..4186793 1 NC_008781.1 KEGG: reu:Reut_A2492 hypothetical protein; hypothetical protein 4186793 4688604 Pnap_3923 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984140.1 4186476 D 365044 CDS YP_984141.1 121606812 4689251 4186852..4187880 1 NC_008781.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 4187880 4689251 Pnap_3924 Polaromonas naphthalenivorans CJ2 DNA/RNA non-specific endonuclease YP_984141.1 4186852 D 365044 CDS YP_984142.1 121606813 4689271 4188287..4189954 1 NC_008781.1 KEGG: psp:PSPPH_4218 hypothetical protein; hypothetical protein 4189954 4689271 Pnap_3925 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984142.1 4188287 D 365044 CDS YP_984143.1 121606814 4689521 4189958..4191550 1 NC_008781.1 PFAM: DNA-directed DNA polymerase; KEGG: psp:PSPPH_4219 DNA polymerase I domain protein; DNA-directed DNA polymerase 4191550 4689521 Pnap_3926 Polaromonas naphthalenivorans CJ2 DNA-directed DNA polymerase YP_984143.1 4189958 D 365044 CDS YP_984144.1 121606815 4689463 complement(4191955..4192380) 1 NC_008781.1 KEGG: dar:Daro_0799 hypothetical protein; hypothetical protein 4192380 4689463 Pnap_3927 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984144.1 4191955 R 365044 CDS YP_984145.1 121606816 4689177 complement(4192453..4193028) 1 NC_008781.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: dar:Daro_3523 resolvase, N-terminal:resolvase helix-turn-helix region; resolvase domain-containing protein 4193028 4689177 Pnap_3928 Polaromonas naphthalenivorans CJ2 resolvase domain-containing protein YP_984145.1 4192453 R 365044 CDS YP_984146.1 121606817 4689494 4193291..4193680 1 NC_008781.1 hypothetical protein 4193680 4689494 Pnap_3929 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984146.1 4193291 D 365044 CDS YP_984147.1 121606818 4689419 4193869..4195266 1 NC_008781.1 KEGG: tel:tll1781 unknown protein; hypothetical protein 4195266 4689419 Pnap_3930 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984147.1 4193869 D 365044 CDS YP_984148.1 121606819 4689155 4195253..4195690 1 NC_008781.1 KEGG: tel:tll1780 unknown protein; hypothetical protein 4195690 4689155 Pnap_3931 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984148.1 4195253 D 365044 CDS YP_984149.1 121606820 4688950 4195904..4196413 1 NC_008781.1 hypothetical protein 4196413 4688950 Pnap_3932 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984149.1 4195904 D 365044 CDS YP_984150.1 121606821 4688938 4196732..4197397 1 NC_008781.1 hypothetical protein 4197397 4688938 Pnap_3933 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984150.1 4196732 D 365044 CDS YP_984151.1 121606822 4689370 4199081..4199467 1 NC_008781.1 hypothetical protein 4199467 4689370 Pnap_3934 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984151.1 4199081 D 365044 CDS YP_984152.1 121606823 4688937 4200273..4200710 1 NC_008781.1 hypothetical protein 4200710 4688937 Pnap_3935 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984152.1 4200273 D 365044 CDS YP_984153.1 121606824 4688925 4200712..4200969 1 NC_008781.1 hypothetical protein 4200969 4688925 Pnap_3936 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984153.1 4200712 D 365044 CDS YP_984154.1 121606825 4688921 complement(4201258..4201842) 1 NC_008781.1 KEGG: rfr:Rfer_4321 hypothetical protein; hypothetical protein 4201842 4688921 Pnap_3937 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984154.1 4201258 R 365044 CDS YP_984155.1 121606826 4688915 complement(4202561..4203382) 1 NC_008781.1 hypothetical protein 4203382 4688915 Pnap_3938 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984155.1 4202561 R 365044 CDS YP_984156.1 121606827 4688922 complement(4205401..4205700) 1 NC_008781.1 KEGG: bur:Bcep18194_B1226 histone-like nucleoid-structuring protein H-NS; histone-like nucleoid-structuring protein H-NS 4205700 4688922 Pnap_3939 Polaromonas naphthalenivorans CJ2 histone-like nucleoid-structuring protein H-NS YP_984156.1 4205401 R 365044 CDS YP_984157.1 121606828 4688891 complement(4206222..4206626) 1 NC_008781.1 hypothetical protein 4206626 4688891 Pnap_3940 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984157.1 4206222 R 365044 CDS YP_984158.1 121606829 4688870 4207877..4208053 1 NC_008781.1 KEGG: rfr:Rfer_4040 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis-like protein 4208053 4688870 Pnap_3941 Polaromonas naphthalenivorans CJ2 molybdenum cofactor biosynthesis-like protein YP_984158.1 4207877 D 365044 CDS YP_984159.1 121606830 4688624 complement(4208075..4209595) 1 NC_008781.1 PFAM: O-antigen polymerase; KEGG: pol:Bpro_4672 O-antigen polymerase; O-antigen polymerase 4209595 4688624 Pnap_3942 Polaromonas naphthalenivorans CJ2 O-antigen polymerase YP_984159.1 4208075 R 365044 CDS YP_984160.1 121606831 4688644 complement(4209757..4210608) 1 NC_008781.1 KEGG: pol:Bpro_4670 FimB; FimB protein 4210608 4688644 Pnap_3943 Polaromonas naphthalenivorans CJ2 FimB protein YP_984160.1 4209757 R 365044 CDS YP_984161.1 121606832 4688586 complement(4210636..4211136) 1 NC_008781.1 PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin; fimbrial protein pilin 4211136 4688586 Pnap_3944 Polaromonas naphthalenivorans CJ2 fimbrial protein pilin YP_984161.1 4210636 R 365044 CDS YP_984162.1 121606833 4688615 complement(4211606..4212106) 1 NC_008781.1 PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin; fimbrial protein pilin 4212106 4688615 Pnap_3945 Polaromonas naphthalenivorans CJ2 fimbrial protein pilin YP_984162.1 4211606 R 365044 CDS YP_984163.1 121606834 4688833 complement(4212231..4212740) 1 NC_008781.1 PFAM: Fimbrial protein pilin; KEGG: rme:Rmet_0472 fimbrial protein pilin; fimbrial protein pilin 4212740 4688833 Pnap_3946 Polaromonas naphthalenivorans CJ2 fimbrial protein pilin YP_984163.1 4212231 R 365044 CDS YP_984164.1 121606835 4688203 complement(4213602..4213895) 1 NC_008781.1 PFAM: DNA polymerase, beta domain protein region; KEGG: noc:Noc_1203 DNA polymerase, beta-like region; DNA polymerase subunit beta 4213895 4688203 Pnap_3948 Polaromonas naphthalenivorans CJ2 DNA polymerase subunit beta YP_984164.1 4213602 R 365044 CDS YP_984165.1 121606836 4688829 complement(4214104..4214670) 1 NC_008781.1 PFAM: Forkhead-associated protein; KEGG: pol:Bpro_4677 FHA domain containing protein; FHA domain-containing protein 4214670 4688829 Pnap_3949 Polaromonas naphthalenivorans CJ2 FHA domain-containing protein YP_984165.1 4214104 R 365044 CDS YP_984166.1 121606837 4688120 complement(4214710..4215495) 1 NC_008781.1 PFAM: protein phosphatase 2C domain protein; KEGG: pol:Bpro_4678 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein 4215495 4688120 Pnap_3950 Polaromonas naphthalenivorans CJ2 protein phosphatase 2C domain-containing protein YP_984166.1 4214710 R 365044 CDS YP_984167.1 121606838 4688603 complement(4215649..4216350) 1 NC_008781.1 PFAM: Integral membrane protein TerC; KEGG: rfr:Rfer_3943 integral membrane protein TerC; integral membrane protein TerC 4216350 4688603 Pnap_3951 Polaromonas naphthalenivorans CJ2 integral membrane protein TerC YP_984167.1 4215649 R 365044 CDS YP_984168.1 121606839 4688233 complement(4216463..4217359) 1 NC_008781.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 4217359 4688233 Pnap_3952 Polaromonas naphthalenivorans CJ2 succinyl-CoA synthetase subunit alpha YP_984168.1 4216463 R 365044 CDS YP_984169.1 121606840 4688214 complement(4217377..4218537) 1 NC_008781.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 4218537 sucC 4688214 sucC Polaromonas naphthalenivorans CJ2 succinyl-CoA synthetase subunit beta YP_984169.1 4217377 R 365044 CDS YP_984170.1 121606841 4688469 4218773..4219684 1 NC_008781.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 4219684 4688469 Pnap_3954 Polaromonas naphthalenivorans CJ2 N-acetyl-gamma-glutamyl-phosphate reductase YP_984170.1 4218773 D 365044 CDS YP_984171.1 121606842 4687888 complement(4219796..4220302) 1 NC_008781.1 PFAM: regulatory protein RecX; KEGG: pol:Bpro_4684 regulatory protein RecX; regulatory protein RecX 4220302 4687888 Pnap_3955 Polaromonas naphthalenivorans CJ2 regulatory protein RecX YP_984171.1 4219796 R 365044 CDS YP_984172.1 121606843 4688177 complement(4220381..4221535) 1 NC_008781.1 KEGG: pol:Bpro_4685 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recombination protein RecA 4221535 4688177 Pnap_3956 Polaromonas naphthalenivorans CJ2 recombination protein RecA YP_984172.1 4220381 R 365044 CDS YP_984173.1 121606844 4688191 4221724..4222221 1 NC_008781.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_4686 transcriptional regulator, MarR family; MarR family transcriptional regulator 4222221 4688191 Pnap_3957 Polaromonas naphthalenivorans CJ2 MarR family transcriptional regulator YP_984173.1 4221724 D 365044 CDS YP_984174.1 121606845 4688132 4222366..4223040 1 NC_008781.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4687 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4223040 4688132 Pnap_3958 Polaromonas naphthalenivorans CJ2 two component transcriptional regulator YP_984174.1 4222366 D 365044 CDS YP_984175.1 121606846 4687797 4223057..4224502 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: pol:Bpro_4688 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4224502 4687797 Pnap_3959 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_984175.1 4223057 D 365044 CDS YP_984176.1 121606847 4688070 4224633..4225574 1 NC_008781.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: pol:Bpro_4701 peptidase C26; peptidase C26 4225574 4688070 Pnap_3960 Polaromonas naphthalenivorans CJ2 peptidase C26 YP_984176.1 4224633 D 365044 CDS YP_984177.1 121606848 4686588 4225808..4228039 1 NC_008781.1 KEGG: sil:SPO1521 regulatory protein, putative; regulatory protein 4228039 4686588 Pnap_3961 Polaromonas naphthalenivorans CJ2 regulatory protein YP_984177.1 4225808 D 365044 CDS YP_984178.1 121606849 4688068 4228036..4229019 1 NC_008781.1 PFAM: ApbE family lipoprotein; KEGG: rpc:RPC_0433 twin-arginine translocation pathway signal; ApbE family lipoprotein 4229019 4688068 Pnap_3962 Polaromonas naphthalenivorans CJ2 ApbE family lipoprotein YP_984178.1 4228036 D 365044 CDS YP_984179.1 121606850 4687732 complement(4229131..4232103) 1 NC_008781.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 4232103 4687732 Pnap_3963 Polaromonas naphthalenivorans CJ2 DNA topoisomerase III YP_984179.1 4229131 R 365044 CDS YP_984180.1 121606851 4688002 4232301..4232834 1 NC_008781.1 PFAM: nuclear protein SET; KEGG: pol:Bpro_4715 nuclear protein SET; nuclear protein SET 4232834 4688002 Pnap_3964 Polaromonas naphthalenivorans CJ2 nuclear protein SET YP_984180.1 4232301 D 365044 CDS YP_984181.1 121606852 4687735 4232842..4233768 1 NC_008781.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: pol:Bpro_4716 biotin--acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase 4233768 4687735 Pnap_3965 Polaromonas naphthalenivorans CJ2 biotin--acetyl-CoA-carboxylase ligase YP_984181.1 4232842 D 365044 CDS YP_984182.1 121606853 4687969 4233762..4234451 1 NC_008781.1 KEGG: pol:Bpro_4717 putative signal peptide protein; putative signal peptide protein 4234451 4687969 Pnap_3966 Polaromonas naphthalenivorans CJ2 putative signal peptide protein YP_984182.1 4233762 D 365044 CDS YP_984183.1 121606854 4687968 complement(4234547..4235185) 1 NC_008781.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YpfH 4235185 4687968 Pnap_3967 Polaromonas naphthalenivorans CJ2 esterase YpfH YP_984183.1 4234547 R 365044 CDS YP_984184.1 121606855 4687243 4235411..4235887 1 NC_008781.1 KEGG: pol:Bpro_4719 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 4235887 4687243 Pnap_3968 Polaromonas naphthalenivorans CJ2 FKBP-type peptidylprolyl isomerase YP_984184.1 4235411 D 365044 CDS YP_984185.1 121606856 4687226 4236077..4236367 1 NC_008781.1 KEGG: pol:Bpro_4720 hypothetical protein; hypothetical protein 4236367 4687226 Pnap_3969 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984185.1 4236077 D 365044 CDS YP_984186.1 121606857 4687941 4236402..4237598 1 NC_008781.1 PFAM: NnrS family protein; KEGG: pol:Bpro_4727 NnrS; NnrS family protein 4237598 4687941 Pnap_3970 Polaromonas naphthalenivorans CJ2 NnrS family protein YP_984186.1 4236402 D 365044 CDS YP_984187.1 121606858 4687440 4237858..4238178 1 NC_008781.1 hypothetical protein 4238178 4687440 Pnap_3971 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984187.1 4237858 D 365044 CDS YP_984188.1 121606859 4687415 complement(4238250..4238714) 1 NC_008781.1 KEGG: ath:At1g26250 proline-rich extensin, putative; hypothetical protein 4238714 4687415 Pnap_3972 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984188.1 4238250 R 365044 CDS YP_984189.1 121606860 4687207 4238977..4239858 1 NC_008781.1 KEGG: ecc:c0818 tolA protein; tolA protein 4239858 4687207 Pnap_3973 Polaromonas naphthalenivorans CJ2 tolA protein YP_984189.1 4238977 D 365044 CDS YP_984190.1 121606861 4687389 4240020..4241843 1 NC_008781.1 KEGG: rfr:Rfer_4005 hypothetical protein; hypothetical protein 4241843 4687389 Pnap_3974 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984190.1 4240020 D 365044 CDS YP_984191.1 121606862 4687195 4241850..4242779 1 NC_008781.1 hypothetical protein 4242779 4687195 Pnap_3975 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984191.1 4241850 D 365044 CDS YP_984192.1 121606863 4687203 4242776..4244515 1 NC_008781.1 KEGG: xac:XAC0147 hypothetical protein; hypothetical protein 4244515 4687203 Pnap_3976 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984192.1 4242776 D 365044 CDS YP_984193.1 121606864 4687376 complement(4244727..4245302) 1 NC_008781.1 KEGG: pol:Bpro_4762 hypothetical protein; hypothetical protein 4245302 4687376 Pnap_3977 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984193.1 4244727 R 365044 CDS YP_984194.1 121606865 4687170 complement(4245303..4245779) 1 NC_008781.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: pol:Bpro_4763 excisionase/Xis, DNA-binding; DNA-binding domain-containing protein 4245779 4687170 Pnap_3978 Polaromonas naphthalenivorans CJ2 DNA-binding domain-containing protein YP_984194.1 4245303 R 365044 CDS YP_984195.1 121606866 4687347 4246000..4246275 1 NC_008781.1 hypothetical protein 4246275 4687347 Pnap_3979 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984195.1 4246000 D 365044 CDS YP_984196.1 121606867 4687171 4246576..4247802 1 NC_008781.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pol:Bpro_4758 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 4247802 4687171 Pnap_3980 Polaromonas naphthalenivorans CJ2 filamentation induced by cAMP protein fic YP_984196.1 4246576 D 365044 CDS YP_984197.1 121606868 4688196 4248627..4248947 1 NC_008781.1 KEGG: pol:Bpro_4751 hypothetical protein; hypothetical protein 4248947 4688196 Pnap_3982 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984197.1 4248627 D 365044 CDS YP_984198.1 121606869 4687165 4249222..4249641 1 NC_008781.1 KEGG: bbr:BB1298 hypothetical protein; hypothetical protein 4249641 4687165 Pnap_3983 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984198.1 4249222 D 365044 CDS YP_984199.1 121606870 4687314 4249744..4250511 1 NC_008781.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rfr:Rfer_4017 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 4250511 4687314 Pnap_3984 Polaromonas naphthalenivorans CJ2 glutathione S-transferase domain-containing protein YP_984199.1 4249744 D 365044 CDS YP_984200.1 121606871 4687276 complement(4250533..4251171) 1 NC_008781.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rba:RB12285 conserved hypothetical protein-putative dimethyladenosine transferase (rRNA methylation); type 11 methyltransferase 4251171 4687276 Pnap_3985 Polaromonas naphthalenivorans CJ2 type 11 methyltransferase YP_984200.1 4250533 R 365044 CDS YP_984201.1 121606872 4687206 4251561..4252391 1 NC_008781.1 PFAM: transglutaminase domain protein; KEGG: hch:HCH_03352 transglutaminase-like enzyme, putative cysteine protease; transglutaminase domain-containing protein 4252391 4687206 Pnap_3986 Polaromonas naphthalenivorans CJ2 transglutaminase domain-containing protein YP_984201.1 4251561 D 365044 CDS YP_984202.1 121606873 4686691 complement(4252471..4254627) 1 NC_008781.1 KEGG: rfr:Rfer_3022 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane 4254627 4686691 Pnap_3987 Polaromonas naphthalenivorans CJ2 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane YP_984202.1 4252471 R 365044 CDS YP_984203.1 121606874 4686678 4254750..4255964 1 NC_008781.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ret:RHE_CH02674 probable oxidoreductase protein; short-chain dehydrogenase/reductase SDR 4255964 4686678 Pnap_3988 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_984203.1 4254750 D 365044 CDS YP_984204.1 121606875 4686673 complement(4256132..4256914) 1 NC_008781.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR; KEGG: pol:Bpro_4767 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4256914 4686673 Pnap_3989 Polaromonas naphthalenivorans CJ2 short-chain dehydrogenase/reductase SDR YP_984204.1 4256132 R 365044 CDS YP_984205.1 121606876 4686241 4257077..4257973 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4768 transcriptional regulator, LysR family; LysR family transcriptional regulator 4257973 4686241 Pnap_3990 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_984205.1 4257077 D 365044 CDS YP_984206.1 121606877 4686233 4258147..4258614 1 NC_008781.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rfr:Rfer_4110 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 4258614 4686233 Pnap_3991 Polaromonas naphthalenivorans CJ2 3-demethylubiquinone-9 3-methyltransferase YP_984206.1 4258147 D 365044 CDS YP_984207.1 121606878 4686647 complement(4258697..4259068) 1 NC_008781.1 PFAM: Collagen triple helix repeat; KEGG: rfr:Rfer_0080 collagen triple helix protein; triple helix repeat-containing collagen 4259068 4686647 Pnap_3992 Polaromonas naphthalenivorans CJ2 triple helix repeat-containing collagen YP_984207.1 4258697 R 365044 CDS YP_984208.1 121606879 4686602 4259358..4260458 1 NC_008781.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_4775 pirin-like; pirin domain-containing protein 4260458 4686602 Pnap_3993 Polaromonas naphthalenivorans CJ2 pirin domain-containing protein YP_984208.1 4259358 D 365044 CDS YP_984209.1 121606880 4686200 4260639..4261079 1 NC_008781.1 PFAM: response regulator receiver; KEGG: pol:Bpro_0607 response regulator receiver domain protein (CheY-like); response regulator receiver protein 4261079 4686200 Pnap_3994 Polaromonas naphthalenivorans CJ2 response regulator receiver protein YP_984209.1 4260639 D 365044 CDS YP_984210.1 121606881 4686489 4261305..4262036 1 NC_008781.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4502 transcriptional regulator, TetR family; TetR family transcriptional regulator 4262036 4686489 Pnap_3995 Polaromonas naphthalenivorans CJ2 TetR family transcriptional regulator YP_984210.1 4261305 D 365044 CDS YP_984211.1 121606882 4686578 4262110..4262556 1 NC_008781.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 4262556 4686578 Pnap_3996 Polaromonas naphthalenivorans CJ2 3-dehydroquinate dehydratase YP_984211.1 4262110 D 365044 CDS YP_984212.1 121606883 4686542 complement(4262581..4263339) 1 NC_008781.1 KEGG: bur:Bcep18194_C7441 hypothetical protein; hypothetical protein 4263339 4686542 Pnap_3997 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984212.1 4262581 R 365044 CDS YP_984213.1 121606884 4688065 4263776..4264228 1 NC_008781.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rfr:Rfer_2436 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein 4264228 4688065 Pnap_4000 Polaromonas naphthalenivorans CJ2 pyridoxamine 5'-phosphate oxidase-like protein YP_984213.1 4263776 D 365044 CDS YP_984214.1 121606885 4686480 complement(4264289..4266526) 1 NC_008781.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_2631 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 4266526 4686480 Pnap_4001 Polaromonas naphthalenivorans CJ2 heavy metal translocating P-type ATPase YP_984214.1 4264289 R 365044 CDS YP_984215.1 121606886 4686442 4266583..4267041 1 NC_008781.1 PFAM: regulatory protein, MerR; KEGG: pol:Bpro_3479 transcriptional regulator, MerR family; MerR family transcriptional regulator 4267041 4686442 Pnap_4002 Polaromonas naphthalenivorans CJ2 MerR family transcriptional regulator YP_984215.1 4266583 D 365044 CDS YP_984216.1 121606887 4686430 complement(4267070..4268272) 1 NC_008781.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A1849 major facilitator superfamily MFS_1; major facilitator superfamily transporter 4268272 4686430 Pnap_4003 Polaromonas naphthalenivorans CJ2 major facilitator superfamily transporter YP_984216.1 4267070 R 365044 CDS YP_984217.1 121606888 4686400 4268421..4269308 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RSc1152 probable transcription regulator protein; LysR family transcriptional regulator 4269308 4686400 Pnap_4004 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_984217.1 4268421 D 365044 CDS YP_984218.1 121606889 4686366 4269356..4270468 1 NC_008781.1 KEGG: rpd:RPD_1710 hypothetical protein; hypothetical protein 4270468 4686366 Pnap_4005 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984218.1 4269356 D 365044 CDS YP_984219.1 121606890 4686320 complement(4270757..4270993) 1 NC_008781.1 KEGG: pol:Bpro_4808 hypothetical protein; hypothetical protein 4270993 4686320 Pnap_4006 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984219.1 4270757 R 365044 CDS YP_984220.1 121606891 4686318 4271140..4272414 1 NC_008781.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 4272414 4686318 Pnap_4007 Polaromonas naphthalenivorans CJ2 cytosine deaminase YP_984220.1 4271140 D 365044 CDS YP_984221.1 121606892 4690194 complement(4272489..4273151) 1 NC_008781.1 KEGG: mma:MM3344 transposase; transposase 4273151 4690194 Pnap_4008 Polaromonas naphthalenivorans CJ2 transposase YP_984221.1 4272489 R 365044 CDS YP_984222.1 121606893 4687046 complement(4273148..4273621) 1 NC_008781.1 KEGG: mma:MM3343 transposase; transposase 4273621 4687046 Pnap_4009 Polaromonas naphthalenivorans CJ2 transposase YP_984222.1 4273148 R 365044 CDS YP_984223.1 121606894 4688807 4273692..4274552 1 NC_008781.1 KEGG: psb:Psyr_2657 hypothetical protein; hypothetical protein 4274552 4688807 Pnap_4010 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984223.1 4273692 D 365044 CDS YP_984224.1 121606895 4687843 4274678..4276150 1 NC_008781.1 PFAM: ribonuclease II; RNA binding S1 domain protein; KEGG: pol:Bpro_2925 exoribonuclease II; exoribonuclease II 4276150 4687843 Pnap_4011 Polaromonas naphthalenivorans CJ2 exoribonuclease II YP_984224.1 4274678 D 365044 CDS YP_984225.1 121606896 4687812 4276274..4276549 1 NC_008781.1 PFAM: protein of unknown function DUF1232; KEGG: pol:Bpro_2926 hypothetical protein; hypothetical protein 4276549 4687812 Pnap_4012 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984225.1 4276274 D 365044 CDS YP_984226.1 121606897 4686716 4276806..4278422 1 NC_008781.1 PFAM: surface antigen (D15); Polypeptide-transport-associated domain protein, ShlB-type; KEGG: pfl:PFL_2820 outer membrane protein, OMP85 family; polypeptide-transport-associated domain-containing protein 4278422 4686716 Pnap_4013 Polaromonas naphthalenivorans CJ2 polypeptide-transport-associated domain-containing protein YP_984226.1 4276806 D 365044 CDS YP_984227.1 121606898 4689981 4278440..4281310 1 NC_008781.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: rso:RS03099 putative hemagglutinin-related protein; filamentous hemagglutinin outer membrane protein 4281310 4689981 Pnap_4014 Polaromonas naphthalenivorans CJ2 filamentous hemagglutinin outer membrane protein YP_984227.1 4278440 D 365044 CDS YP_984228.1 121606899 4689136 4281323..4282174 1 NC_008781.1 hypothetical protein 4282174 4689136 Pnap_4015 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984228.1 4281323 D 365044 CDS YP_984229.1 121606900 4689851 complement(4282221..4283174) 1 NC_008781.1 KEGG: pol:Bpro_2929 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 4283174 4689851 Pnap_4016 Polaromonas naphthalenivorans CJ2 2-dehydropantoate 2-reductase YP_984229.1 4282221 R 365044 CDS YP_984230.1 121606901 4686719 4283305..4283619 1 NC_008781.1 PFAM: protein of unknown function DUF891; KEGG: xft:PD1176 hypothetical protein; hypothetical protein 4283619 4686719 Pnap_4017 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984230.1 4283305 D 365044 CDS YP_984231.1 121606902 4687231 4283623..4283943 1 NC_008781.1 KEGG: rso:RS05545 hypothetical protein; putative transcriptional regulator 4283943 4687231 Pnap_4018 Polaromonas naphthalenivorans CJ2 putative transcriptional regulator YP_984231.1 4283623 D 365044 CDS YP_984232.1 121606903 4686082 4284159..4285505 1 NC_008781.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 4285505 4686082 Pnap_4019 Polaromonas naphthalenivorans CJ2 putative oxidoreductase YP_984232.1 4284159 D 365044 CDS YP_984233.1 121606904 4690002 4285556..4286863 1 NC_008781.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 4286863 4690002 Pnap_4020 Polaromonas naphthalenivorans CJ2 dihydropyrimidine dehydrogenase YP_984233.1 4285556 D 365044 CDS YP_984234.1 121606905 4686123 4286928..4288373 1 NC_008781.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 4288373 4686123 Pnap_4021 Polaromonas naphthalenivorans CJ2 phenylhydantoinase YP_984234.1 4286928 D 365044 CDS YP_984235.1 121606906 4686540 4288398..4289654 1 NC_008781.1 KEGG: bcn:Bcen_5723 amidase, hydantoinase/carbamoylase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; amidase 4289654 4686540 Pnap_4022 Polaromonas naphthalenivorans CJ2 amidase YP_984235.1 4288398 D 365044 CDS YP_984236.1 121606907 4688190 4289768..4291231 1 NC_008781.1 hypothetical protein 4291231 4688190 Pnap_4023 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984236.1 4289768 D 365044 CDS YP_984237.1 121606908 4686321 4291549..4291725 1 NC_008781.1 KEGG: cps:CPS_0382 hypothetical protein; hypothetical protein 4291725 4686321 Pnap_4024 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984237.1 4291549 D 365044 CDS YP_984238.1 121606909 4689883 4292306..4292692 1 NC_008781.1 KEGG: mca:MCA1565 protozoan/cyanobacterial globin family protein; globin family protein 4292692 4689883 Pnap_4025 Polaromonas naphthalenivorans CJ2 globin family protein YP_984238.1 4292306 D 365044 CDS YP_984239.1 121606910 4689009 complement(4292732..4293106) 1 NC_008781.1 hypothetical protein 4293106 4689009 Pnap_4026 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984239.1 4292732 R 365044 CDS YP_984240.1 121606911 4687820 complement(4293501..4293986) 1 NC_008781.1 PFAM: Calcium/calmodulin dependent protein kinase II, association-domain protein; KEGG: reu:Reut_A2135 conserved hypothetical protein 2246; calcium/calmodulin dependent protein kinase II association-domain-containing protein 4293986 4687820 Pnap_4027 Polaromonas naphthalenivorans CJ2 calcium/calmodulin dependent protein kinase II association-domain-containing protein YP_984240.1 4293501 R 365044 CDS YP_984241.1 121606912 4690006 complement(4294144..4294674) 1 NC_008781.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: pol:Bpro_1399 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 4294674 4690006 Pnap_4028 Polaromonas naphthalenivorans CJ2 3-demethylubiquinone-9 3-methyltransferase YP_984241.1 4294144 R 365044 CDS YP_984242.1 121606913 4688169 complement(4294900..4296168) 1 NC_008781.1 PFAM: cytochrome P450; KEGG: pol:Bpro_1581 cytochrome P450; cytochrome P450 4296168 4688169 Pnap_4029 Polaromonas naphthalenivorans CJ2 cytochrome P450 YP_984242.1 4294900 R 365044 CDS YP_984243.1 121606914 4689442 complement(4296168..4297205) 1 NC_008781.1 KEGG: pol:Bpro_1580 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 4297205 4689442 Pnap_4030 Polaromonas naphthalenivorans CJ2 biotin synthase YP_984243.1 4296168 R 365044 CDS YP_984244.1 121606915 4687570 complement(4297239..4297961) 1 NC_008781.1 TIGRFAM: dethiobiotin synthase; KEGG: bcn:Bcen_2319 dethiobiotin synthase; dethiobiotin synthase 4297961 4687570 Pnap_4031 Polaromonas naphthalenivorans CJ2 dethiobiotin synthase YP_984244.1 4297239 R 365044 CDS YP_984245.1 121606916 4686329 complement(4297958..4299190) 1 NC_008781.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 4299190 4686329 Pnap_4032 Polaromonas naphthalenivorans CJ2 8-amino-7-oxononanoate synthase YP_984245.1 4297958 R 365044 CDS YP_984246.1 121606917 4688141 complement(4300919..4301395) 1 NC_008781.1 KEGG: sme:SMb21046 putative transposase of insertion sequence ISRm10-1; putative transposase of insertion sequence ISRm10-1 4301395 4688141 Pnap_4034 Polaromonas naphthalenivorans CJ2 putative transposase of insertion sequence ISRm10-1 YP_984246.1 4300919 R 365044 CDS YP_984247.1 121606918 4687016 complement(4301415..4301873) 1 NC_008781.1 KEGG: ret:RHE_PB00143 probable insertion sequence transposase protein; hypothetical protein 4301873 4687016 Pnap_4035 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984247.1 4301415 R 365044 CDS YP_984248.1 121606919 4687765 complement(4301949..4302224) 1 NC_008781.1 hypothetical protein 4302224 4687765 Pnap_4036 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984248.1 4301949 R 365044 CDS YP_984249.1 121606920 4686550 complement(4302526..4303185) 1 NC_008781.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; KEGG: reu:Reut_B3988 regulatory protein, TetR; TetR family transcriptional regulator 4303185 4686550 Pnap_4037 Polaromonas naphthalenivorans CJ2 TetR family transcriptional regulator YP_984249.1 4302526 R 365044 CDS YP_984250.1 121606921 4688031 complement(4303280..4304275) 1 NC_008781.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0374 transcriptional regulator, LysR family; LysR family transcriptional regulator 4304275 4688031 Pnap_4038 Polaromonas naphthalenivorans CJ2 LysR family transcriptional regulator YP_984250.1 4303280 R 365044 CDS YP_984251.1 121606922 4687503 4304383..4305732 1 NC_008781.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 4305732 4687503 Pnap_4039 Polaromonas naphthalenivorans CJ2 beta alanine--pyruvate transaminase YP_984251.1 4304383 D 365044 CDS YP_984252.1 121606923 4686577 4306250..4307410 1 NC_008781.1 KEGG: psp:PSPPH_2727 sugar-binding transcriptional regulator, LacI family; sugar ABC transporter periplasmic protein 4307410 4686577 Pnap_4040 Polaromonas naphthalenivorans CJ2 sugar ABC transporter periplasmic protein YP_984252.1 4306250 D 365044 CDS YP_984253.1 121606924 4687317 4307485..4308480 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 4308480 4687317 Pnap_4041 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctP YP_984253.1 4307485 D 365044 CDS YP_984254.1 121606925 4686148 4308570..4309562 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 4309562 4686148 Pnap_4042 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctP YP_984254.1 4308570 D 365044 CDS YP_984255.1 121606926 4687714 4309559..4310542 1 NC_008781.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMb21438 putative C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide; TRAP dicarboxylate transporter subunit DctP 4310542 4687714 Pnap_4043 Polaromonas naphthalenivorans CJ2 TRAP dicarboxylate transporter subunit DctP YP_984255.1 4309559 D 365044 CDS YP_984256.1 121606927 4686772 4310629..4312587 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: pol:Bpro_4822 histidine kinase; integral membrane sensor signal transduction histidine kinase 4312587 4686772 Pnap_4044 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_984256.1 4310629 D 365044 CDS YP_984257.1 121606928 4688992 4312584..4313720 1 NC_008781.1 PFAM: domain of unknown function DUF1745; KEGG: bte:BTH_II0732 hypothetical protein; hypothetical protein 4313720 4688992 Pnap_4045 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984257.1 4312584 D 365044 CDS YP_984258.1 121606929 4689068 4313707..4315218 1 NC_008781.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-4 domain protein; KEGG: pol:Bpro_4822 histidine kinase; PAS/PAC sensor signal transduction histidine kinase 4315218 4689068 Pnap_4046 Polaromonas naphthalenivorans CJ2 PAS/PAC sensor signal transduction histidine kinase YP_984258.1 4313707 D 365044 CDS YP_984259.1 121606930 4687511 4315215..4316510 1 NC_008781.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4824 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 4316510 4687511 Pnap_4047 Polaromonas naphthalenivorans CJ2 response regulator receiver sensor signal transduction histidine kinase YP_984259.1 4315215 D 365044 CDS YP_984260.1 121606931 4687142 4316507..4317802 1 NC_008781.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4824 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 4317802 4687142 Pnap_4048 Polaromonas naphthalenivorans CJ2 response regulator receiver sensor signal transduction histidine kinase YP_984260.1 4316507 D 365044 CDS YP_984261.1 121606932 4687509 4317799..4319460 1 NC_008781.1 KEGG: pol:Bpro_4825 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 4319460 4687509 Pnap_4049 Polaromonas naphthalenivorans CJ2 multi-sensor signal transduction histidine kinase YP_984261.1 4317799 D 365044 CDS YP_984262.1 121606933 4689573 4319520..4320632 1 NC_008781.1 KEGG: sme:SMa0203 putative ABC transporter; putative ABC transporter 4320632 4689573 Pnap_4050 Polaromonas naphthalenivorans CJ2 putative ABC transporter YP_984262.1 4319520 D 365044 CDS YP_984263.1 121606934 4687682 4320629..4322116 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll4203 sugar ABC transporter, ATP-binding protein; ABC transporter-like protein 4322116 4687682 Pnap_4051 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_984263.1 4320629 D 365044 CDS YP_984264.1 121606935 4688789 4322109..4323068 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: mlo:mll4202 sugar ABC transporter, permease; inner-membrane translocator 4323068 4688789 Pnap_4052 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_984264.1 4322109 D 365044 CDS YP_984265.1 121606936 4687889 4323104..4324009 1 NC_008781.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_L_1646 ribose transport protein rbsC; inner-membrane translocator 4324009 4687889 Pnap_4053 Polaromonas naphthalenivorans CJ2 inner-membrane translocator YP_984265.1 4323104 D 365044 CDS YP_984266.1 121606937 4687866 4324044..4329314 1 NC_008781.1 PFAM: protein kinase; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; SMART: serine/threonine protein kinase; KEGG: mxa:MXAN_4053 sensor histidine kinase; ATPase domain-containing protein 4329314 4687866 Pnap_4054 Polaromonas naphthalenivorans CJ2 ATPase domain-containing protein YP_984266.1 4324044 D 365044 CDS YP_984267.1 121606938 4686971 complement(4329582..4330580) 1 NC_008781.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: pol:Bpro_4826 glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase 4330580 4686971 Pnap_4055 Polaromonas naphthalenivorans CJ2 glyceraldehyde-3-phosphate dehydrogenase YP_984267.1 4329582 R 365044 CDS YP_984268.1 121606939 4689652 complement(4330644..4332689) 1 NC_008781.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: pol:Bpro_4827 transketolase; transketolase 4332689 4689652 Pnap_4056 Polaromonas naphthalenivorans CJ2 transketolase YP_984268.1 4330644 R 365044 CDS YP_984269.1 121606940 4689783 4332893..4333630 1 NC_008781.1 PFAM: Nucleotidyl transferase; KEGG: rfr:Rfer_0085 nucleotidyl transferase; nucleotidyl transferase 4333630 4689783 Pnap_4057 Polaromonas naphthalenivorans CJ2 nucleotidyl transferase YP_984269.1 4332893 D 365044 CDS YP_984270.1 121606941 4690186 4333645..4335066 1 NC_008781.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: pol:Bpro_4829 peptidase M24; peptidase M24 4335066 4690186 Pnap_4058 Polaromonas naphthalenivorans CJ2 peptidase M24 YP_984270.1 4333645 D 365044 CDS YP_984271.1 121606942 4690079 4335118..4335510 1 NC_008781.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: dar:Daro_1103 glutaredoxin family protein; glutaredoxin 4335510 4690079 Pnap_4059 Polaromonas naphthalenivorans CJ2 glutaredoxin YP_984271.1 4335118 D 365044 CDS YP_984272.1 121606943 4689859 complement(4335553..4335936) 1 NC_008781.1 PFAM: glutaredoxin; KEGG: rfr:Rfer_0010 glutaredoxin; glutaredoxin 4335936 4689859 Pnap_4060 Polaromonas naphthalenivorans CJ2 glutaredoxin YP_984272.1 4335553 R 365044 CDS YP_984273.1 121606944 4688148 4336221..4336658 1 NC_008781.1 PFAM: CBS domain containing protein; KEGG: pol:Bpro_2185 putative signal transduction protein with CBS domains; signal-transduction protein 4336658 4688148 Pnap_4061 Polaromonas naphthalenivorans CJ2 signal-transduction protein YP_984273.1 4336221 D 365044 CDS YP_984274.1 121606945 4687424 complement(4336695..4337453) 1 NC_008781.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1504 ABC transporter related; ABC transporter-like protein 4337453 4687424 Pnap_4062 Polaromonas naphthalenivorans CJ2 ABC transporter-like protein YP_984274.1 4336695 R 365044 CDS YP_984275.1 121606946 4687828 complement(4337466..4338116) 1 NC_008781.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0163 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 4338116 4687828 Pnap_4063 Polaromonas naphthalenivorans CJ2 polar amino acid ABC transporter inner membrane subunit YP_984275.1 4337466 R 365044 CDS YP_984276.1 121606947 4689257 complement(4338133..4338789) 1 NC_008781.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0162 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 4338789 4689257 Pnap_4064 Polaromonas naphthalenivorans CJ2 polar amino acid ABC transporter inner membrane subunit YP_984276.1 4338133 R 365044 CDS YP_984277.1 121606948 4686583 complement(4338898..4339692) 1 NC_008781.1 PFAM: extracellular solute-binding protein, family 3; KEGG: rfr:Rfer_0161 extracellular solute-binding protein, family 3; extracellular solute-binding protein 4339692 4686583 Pnap_4065 Polaromonas naphthalenivorans CJ2 extracellular solute-binding protein YP_984277.1 4338898 R 365044 CDS YP_984278.1 121606949 4686766 4339915..4340826 1 NC_008781.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_1500 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 4340826 4686766 Pnap_4066 Polaromonas naphthalenivorans CJ2 RpiR family transcriptional regulator YP_984278.1 4339915 D 365044 CDS YP_984279.1 121606950 4688990 4340848..4342071 1 NC_008781.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 4342071 4688990 Pnap_4067 Polaromonas naphthalenivorans CJ2 diaminopropionate ammonia-lyase YP_984279.1 4340848 D 365044 CDS YP_984280.1 121606951 4689055 4342068..4343312 1 NC_008781.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 4343312 4689055 Pnap_4068 Polaromonas naphthalenivorans CJ2 allantoate amidohydrolase YP_984280.1 4342068 D 365044 CDS YP_984281.1 121606952 4688760 4343352..4344317 1 NC_008781.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_1497 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4344317 4688760 Pnap_4069 Polaromonas naphthalenivorans CJ2 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_984281.1 4343352 D 365044 CDS YP_984282.1 121606953 4689536 complement(4344490..4348458) 1 NC_008781.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 4348458 putA 4689536 putA Polaromonas naphthalenivorans CJ2 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_984282.1 4344490 R 365044 CDS YP_984283.1 121606954 4687238 4348842..4351172 1 NC_008781.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 4351172 4687238 Pnap_4071 Polaromonas naphthalenivorans CJ2 malic enzyme YP_984283.1 4348842 D 365044 CDS YP_984284.1 121606955 4686505 4351669..4352094 1 NC_008781.1 KEGG: pol:Bpro_4860 hypothetical protein; hypothetical protein 4352094 4686505 Pnap_4072 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984284.1 4351669 D 365044 CDS YP_984285.1 121606956 4687825 complement(4352079..4352318) 1 NC_008781.1 hypothetical protein 4352318 4687825 Pnap_4073 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984285.1 4352079 R 365044 CDS YP_984286.1 121606957 4686071 complement(4352364..4353203) 1 NC_008781.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 4353203 ksgA 4686071 ksgA Polaromonas naphthalenivorans CJ2 dimethyladenosine transferase YP_984286.1 4352364 R 365044 CDS YP_984287.1 121606958 4686753 complement(4353200..4354609) 1 NC_008781.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_4862 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 4354609 4686753 Pnap_4075 Polaromonas naphthalenivorans CJ2 PpiC-type peptidyl-prolyl cis-trans isomerase YP_984287.1 4353200 R 365044 CDS YP_984288.1 121606959 4686553 complement(4354602..4357046) 1 NC_008781.1 PFAM: Organic solvent tolerance protein; KEGG: pol:Bpro_4863 organic solvent tolerance protein; organic solvent tolerance protein 4357046 4686553 Pnap_4076 Polaromonas naphthalenivorans CJ2 organic solvent tolerance protein YP_984288.1 4354602 R 365044 CDS YP_984289.1 121606960 4686232 4357149..4358231 1 NC_008781.1 PFAM: aminoglycoside phosphotransferase; KEGG: pol:Bpro_4864 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 4358231 4686232 Pnap_4077 Polaromonas naphthalenivorans CJ2 aminoglycoside phosphotransferase YP_984289.1 4357149 D 365044 CDS YP_984290.1 121606961 4688519 4358323..4359075 1 NC_008781.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 4359075 4688519 Pnap_4078 Polaromonas naphthalenivorans CJ2 16S ribosomal RNA methyltransferase RsmE YP_984290.1 4358323 D 365044 CDS YP_984291.1 121606962 4688640 complement(4359135..4359935) 1 NC_008781.1 PFAM: amidohydrolase 2; KEGG: rso:RS05190 probable hydrolase transmembrane protein; amidohydrolase 2 4359935 4688640 Pnap_4079 Polaromonas naphthalenivorans CJ2 amidohydrolase 2 YP_984291.1 4359135 R 365044 CDS YP_984292.1 121606963 4690013 4359966..4360733 1 NC_008781.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pol:Bpro_3370 transcriptional regulator, GntR family; UbiC transcription regulator-associated domain-containing protein 4360733 4690013 Pnap_4080 Polaromonas naphthalenivorans CJ2 UbiC transcription regulator-associated domain-containing protein YP_984292.1 4359966 D 365044 CDS YP_984293.1 121606964 4686136 4360780..4361787 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3798 hypothetical protein; hypothetical protein 4361787 4686136 Pnap_4081 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984293.1 4360780 D 365044 CDS YP_984294.1 121606965 4689497 4361859..4362854 1 NC_008781.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1449 twin-arginine translocation pathway signal; hypothetical protein 4362854 4689497 Pnap_4082 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984294.1 4361859 D 365044 CDS YP_984295.1 121606966 4688118 complement(4362976..4364451) 1 NC_008781.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_4868 peptidase M20; peptidase M20 4364451 4688118 Pnap_4083 Polaromonas naphthalenivorans CJ2 peptidase M20 YP_984295.1 4362976 R 365044 CDS YP_984296.1 121606967 4687666 complement(4364542..4365282) 1 NC_008781.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; KEGG: rso:RSc3161 probable two component response regulator transcription regulator protein; two component LuxR family transcriptional regulator 4365282 4687666 Pnap_4084 Polaromonas naphthalenivorans CJ2 two component LuxR family transcriptional regulator YP_984296.1 4364542 R 365044 CDS YP_984297.1 121606968 4689649 complement(4365539..4367497) 1 NC_008781.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bbr:BB2739 probable two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4367497 4689649 Pnap_4085 Polaromonas naphthalenivorans CJ2 integral membrane sensor signal transduction histidine kinase YP_984297.1 4365539 R 365044 CDS YP_984298.1 121606969 4686153 4367746..4370757 1 NC_008781.1 PFAM: pentapeptide repeat protein; KEGG: ana:all3114 hypothetical protein; pentapeptide repeat-containing protein 4370757 4686153 Pnap_4086 Polaromonas naphthalenivorans CJ2 pentapeptide repeat-containing protein YP_984298.1 4367746 D 365044 CDS YP_984299.1 121606970 4689273 4370812..4374099 1 NC_008781.1 hypothetical protein 4374099 4689273 Pnap_4087 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984299.1 4370812 D 365044 CDS YP_984300.1 121606971 4687070 complement(4374139..4375008) 1 NC_008781.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4375008 psd 4687070 psd Polaromonas naphthalenivorans CJ2 phosphatidylserine decarboxylase YP_984300.1 4374139 R 365044 CDS YP_984301.1 121606972 4689080 complement(4375075..4375263) 1 NC_008781.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pol:Bpro_4871 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 4375263 4689080 Pnap_4089 Polaromonas naphthalenivorans CJ2 heavy metal transport/detoxification protein YP_984301.1 4375075 R 365044 CDS YP_984302.1 121606973 4686671 4375468..4377909 1 NC_008781.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_4872 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 4377909 4686671 Pnap_4090 Polaromonas naphthalenivorans CJ2 heavy metal translocating P-type ATPase YP_984302.1 4375468 D 365044 CDS YP_984303.1 121606974 4686688 4377906..4378322 1 NC_008781.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: pol:Bpro_4873 transcriptional regulator, MerR family; MerR family transcriptional regulator 4378322 4686688 Pnap_4091 Polaromonas naphthalenivorans CJ2 MerR family transcriptional regulator YP_984303.1 4377906 D 365044 CDS YP_984304.1 121606975 4687357 complement(4378552..4378800) 1 NC_008781.1 hypothetical protein 4378800 4687357 Pnap_4092 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984304.1 4378552 R 365044 CDS YP_984305.1 121606976 4688690 complement(4379141..4379512) 1 NC_008781.1 hypothetical protein 4379512 4688690 Pnap_4093 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984305.1 4379141 R 365044 CDS YP_984306.1 121606977 4688084 complement(4379823..4380980) 1 NC_008781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: noc:Noc_1587 transposase; IS605 family transposase OrfB 4380980 4688084 Pnap_4095 Polaromonas naphthalenivorans CJ2 IS605 family transposase OrfB YP_984306.1 4379823 R 365044 CDS YP_984307.1 121606978 4686286 complement(4381236..4382120) 1 NC_008781.1 PFAM: transposase, IS4 family protein; KEGG: neu:NE2504 transposase IS4 family; transposase, IS4 family protein 4382120 4686286 Pnap_4096 Polaromonas naphthalenivorans CJ2 transposase, IS4 family protein YP_984307.1 4381236 R 365044 CDS YP_984308.1 121606979 4686721 4382303..4382956 1 NC_008781.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: pol:Bpro_4875 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 4382956 4686721 Pnap_4097 Polaromonas naphthalenivorans CJ2 2OG-Fe(II) oxygenase YP_984308.1 4382303 D 365044 CDS YP_984309.1 121606980 4686108 complement(4382968..4383822) 1 NC_008781.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rfr:Rfer_0443 hydroxypyruvate isomerase; hydroxypyruvate isomerase 4383822 4686108 Pnap_4098 Polaromonas naphthalenivorans CJ2 hydroxypyruvate isomerase YP_984309.1 4382968 R 365044 CDS YP_984310.1 121606981 4687296 complement(4383829..4385691) 1 NC_008781.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pol:Bpro_4885 sulphate transporter; sulfate transporter 4385691 4687296 Pnap_4099 Polaromonas naphthalenivorans CJ2 sulfate transporter YP_984310.1 4383829 R 365044 CDS YP_984311.1 121606982 4687242 complement(4385742..4387106) 1 NC_008781.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pol:Bpro_4886 chromate transporter; chromate transporter 4387106 4687242 Pnap_4100 Polaromonas naphthalenivorans CJ2 chromate transporter YP_984311.1 4385742 R 365044 CDS YP_984312.1 121606983 4687808 complement(4387108..4387716) 1 NC_008781.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_4888 methionine biosynthesis MetW; methionine biosynthesis protein MetW 4387716 4687808 Pnap_4101 Polaromonas naphthalenivorans CJ2 methionine biosynthesis protein MetW YP_984312.1 4387108 R 365044 CDS YP_984313.1 121606984 4688687 complement(4387713..4388822) 1 NC_008781.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 4388822 metX 4688687 metX Polaromonas naphthalenivorans CJ2 homoserine O-acetyltransferase YP_984313.1 4387713 R 365044 CDS YP_984314.1 121606985 4690210 complement(4389011..4389577) 1 NC_008781.1 PFAM: protein of unknown function UPF0016; KEGG: pol:Bpro_4890 protein of unknown function UPF0016; hypothetical protein 4389577 4690210 Pnap_4103 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984314.1 4389011 R 365044 CDS YP_984315.1 121606986 4689105 4389963..4391165 1 NC_008781.1 PFAM: Rh family protein/ammonium transporter; KEGG: pol:Bpro_4891 Rh-like protein/ammonium transporter; Rh family protein/ammonium transporter 4391165 4689105 Pnap_4104 Polaromonas naphthalenivorans CJ2 Rh family protein/ammonium transporter YP_984315.1 4389963 D 365044 CDS YP_984316.1 121606987 4687049 4391376..4391834 1 NC_008781.1 PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 4391834 4687049 Pnap_4105 Polaromonas naphthalenivorans CJ2 RNP-1 like RNA-binding protein YP_984316.1 4391376 D 365044 CDS YP_984317.1 121606988 4686169 complement(4391993..4392706) 1 NC_008781.1 PFAM: protein of unknown function DUF1239; KEGG: pol:Bpro_4896 protein of unknown function DUF1239; hypothetical protein 4392706 4686169 Pnap_4106 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984317.1 4391993 R 365044 CDS YP_984318.1 121606989 4690196 complement(4392703..4393320) 1 NC_008781.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pol:Bpro_4897 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4393320 4690196 Pnap_4107 Polaromonas naphthalenivorans CJ2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_984318.1 4392703 R 365044 CDS YP_984319.1 121606990 4686364 complement(4393322..4394314) 1 NC_008781.1 KEGG: pol:Bpro_4898 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 4394314 4686364 Pnap_4108 Polaromonas naphthalenivorans CJ2 KpsF/GutQ family protein YP_984319.1 4393322 R 365044 CDS YP_984320.1 121606991 4688287 4394405..4396390 1 NC_008781.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_4900 potassium efflux system protein; sodium/hydrogen exchanger 4396390 4688287 Pnap_4109 Polaromonas naphthalenivorans CJ2 sodium/hydrogen exchanger YP_984320.1 4394405 D 365044 CDS YP_984321.1 121606992 4688935 complement(4396457..4397137) 1 NC_008781.1 KEGG: pol:Bpro_4902 hypothetical protein; hypothetical protein 4397137 4688935 Pnap_4110 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984321.1 4396457 R 365044 CDS YP_984322.1 121606993 4686186 complement(4397306..4397797) 1 NC_008781.1 PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_4903 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein 4397797 4686186 Pnap_4111 Polaromonas naphthalenivorans CJ2 cyclic nucleotide-binding protein YP_984322.1 4397306 R 365044 CDS YP_984323.1 121606994 4687178 complement(4397951..4399387) 1 NC_008781.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4399387 trmE 4687178 trmE Polaromonas naphthalenivorans CJ2 tRNA modification GTPase TrmE YP_984323.1 4397951 R 365044 CDS YP_984324.1 121606995 4690091 complement(4399442..4401151) 1 NC_008781.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: pol:Bpro_4905 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein 4401151 4690091 Pnap_4113 Polaromonas naphthalenivorans CJ2 60 kDa inner membrane insertion protein YP_984324.1 4399442 R 365044 CDS YP_984325.1 121606996 4688658 complement(4401148..4401465) 1 NC_008781.1 PFAM: protein of unknown function DUF37; KEGG: pol:Bpro_4906 protein of unknown function DUF37; hypothetical protein 4401465 4688658 Pnap_4114 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984325.1 4401148 R 365044 CDS YP_984326.1 121606997 4687663 complement(4401462..4401794) 1 NC_008781.1 KEGG: pol:Bpro_4907 hypothetical protein; hypothetical protein 4401794 4687663 Pnap_4115 Polaromonas naphthalenivorans CJ2 hypothetical protein YP_984326.1 4401462 R 365044 CDS YP_984327.1 121606998 4690225 complement(4401930..4402064) 1 NC_008781.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4402064 rpmH 4690225 rpmH Polaromonas naphthalenivorans CJ2 50S ribosomal protein L34 YP_984327.1 4401930 R 365044 CDS YP_984328.1 121606999 4690222 4402850..4404247 1 NC_008781.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 4404247 dnaA 4690222 dnaA Polaromonas naphthalenivorans CJ2 chromosomal replication initiation protein YP_984328.1 4402850 D 365044 CDS YP_984329.1 121607000 4686367 4404522..4405628 1 NC_008781.1 KEGG: pol:Bpro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 4405628 4686367 Pnap_4118 Polaromonas naphthalenivorans CJ2 DNA polymerase III subunit beta YP_984329.1 4404522 D 365044 CDS YP_984330.1 121607001 4686454 4405728..4408352 1 NC_008781.1 KEGG: pol:Bpro_0003 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 4408352 4686454 Pnap_4119 Polaromonas naphthalenivorans CJ2 DNA gyrase subunit B YP_984330.1 4405728 D 365044 CDS YP_984331.1 121607002 4686512 4408360..4408971 1 NC_008781.1 KEGG: pol:Bpro_0009 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA-directed DNA polymerase 4408971 4686512 Pnap_4120 Polaromonas naphthalenivorans CJ2 DNA-directed DNA polymerase YP_984331.1 4408360 D 365044 CDS YP_984332.1 121607003 4686188 4409056..4410153 1 NC_008781.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 4410153 4686188 Pnap_4121 Polaromonas naphthalenivorans CJ2 phospho-2-dehydro-3-deoxyheptonate aldolase YP_984332.1 4409056 D 365044 CDS