-- dump date 20111121_013749 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 291112000001 SEQ_END SEQ_END NC_012961.1 29330 29330 DR NC_012961.1; contig end 29330..29330 Photorhabdus asymbiotica 291112000002 SEQ_END SEQ_END NC_012962.1 5064808 5064808 DR NC_012962.1; contig end 5064808..5064808 Photorhabdus asymbiotica YP_003038813.1 CDS repA NC_012961.1 1 1065 D putative replication protein A 1..1065 Photorhabdus asymbiotica 8164832 YP_003038814.1 CDS PAU_p0002 NC_012961.1 2284 2676 D hypothetical protein 2284..2676 Photorhabdus asymbiotica 8164830 YP_003038815.1 CDS PAU_p0003 NC_012961.1 2686 3798 R putative phage integrase complement(2686..3798) Photorhabdus asymbiotica 8164805 YP_003038816.1 CDS PAU_p0004 NC_012961.1 4118 4675 R putative transmembrane colicin-b immunity protein (microcin-b immunity protein) complement(4118..4675) Photorhabdus asymbiotica 8164806 YP_003038817.1 CDS PAU_p0005 NC_012961.1 4739 6013 R C-terminus is similar to colicin and pyocin; putative colicin-like protein complement(4739..6013) Photorhabdus asymbiotica 8164807 YP_003038818.1 CDS PAU_p0006 NC_012961.1 6283 6636 R hypothetical protein complement(6283..6636) Photorhabdus asymbiotica 8164808 YP_003038819.1 CDS PAU_p0007 NC_012961.1 6633 7304 R putative plasmid stability protein complement(6633..7304) Photorhabdus asymbiotica 8164809 YP_003038820.1 CDS PAU_p0008 NC_012961.1 7537 7815 D hypothetical protein 7537..7815 Photorhabdus asymbiotica 8164812 YP_003038821.1 CDS PAU_p0010 NC_012961.1 7820 8320 D hypothetical protein 7820..8320 Photorhabdus asymbiotica 8164811 YP_003038822.1 CDS PAU_p0011 NC_012961.1 8763 9422 R hypothetical protein complement(8763..9422) Photorhabdus asymbiotica 8164813 YP_003038823.1 CDS PAU_p0012 NC_012961.1 9422 9742 R hypothetical protein complement(9422..9742) Photorhabdus asymbiotica 8164814 YP_003038824.1 CDS PAU_p0013 NC_012961.1 9778 10467 R putative transmembrane protein complement(9778..10467) Photorhabdus asymbiotica 8164815 YP_003038825.1 CDS PAU_p0014 NC_012961.1 10550 11206 R hypothetical protein complement(10550..11206) Photorhabdus asymbiotica 8164816 YP_003038826.1 CDS PAU_p0016 NC_012961.1 11206 11517 R hypothetical protein complement(11206..11517) Photorhabdus asymbiotica 8164817 YP_003038827.1 CDS PAU_p0017 NC_012961.1 11588 11914 R hypothetical protein complement(11588..11914) Photorhabdus asymbiotica 8164818 YP_003038828.1 CDS tniR NC_012961.1 12107 12718 R putative resolvase complement(12107..12718) Photorhabdus asymbiotica 8164819 YP_003038829.1 CDS PAU_p0019 NC_012961.1 12726 13556 R hypothetical protein complement(12726..13556) Photorhabdus asymbiotica 8164831 YP_003038830.1 CDS PAU_p0020 NC_012961.1 14085 18332 R putative phage tail protein complement(14085..18332) Photorhabdus asymbiotica 8164820 YP_003038831.1 CDS 49 NC_012961.1 18403 19032 R putative phage tail assembly protein complement(18403..19032) Photorhabdus asymbiotica 8164821 YP_003038832.1 CDS K NC_012961.1 19025 19819 R putative tail assembly protein complement(19025..19819) Photorhabdus asymbiotica 8164826 YP_003038833.1 CDS L NC_012961.1 19816 20514 R putative minor tail protein L complement(19816..20514) Photorhabdus asymbiotica 8164827 YP_003038834.1 CDS M NC_012961.1 20560 20892 R putative phage minor tail protein M complement(20560..20892) Photorhabdus asymbiotica 8164828 YP_003038835.1 CDS PAU_p0025 NC_012961.1 20902 25470 R putative phage tail tape measure protein complement(20902..25470) Photorhabdus asymbiotica 8164829 YP_003038836.1 CDS PAU_p0026 NC_012961.1 25477 25713 R hypothetical protein complement(25477..25713) Photorhabdus asymbiotica 8164822 YP_003038837.1 CDS PAU_p0027 NC_012961.1 25827 26183 R hypothetical protein complement(25827..26183) Photorhabdus asymbiotica 8164823 YP_003038838.1 CDS PAU_p0028 NC_012961.1 26250 26765 R hypothetical protein complement(26250..26765) Photorhabdus asymbiotica 8164824 YP_003038839.1 CDS PAU_p0029 NC_012961.1 27139 27417 D hypothetical protein 27139..27417 Photorhabdus asymbiotica 8164825 YP_003038840.1 CDS dnaA NC_012962.1 133 1452 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 133..1452 Photorhabdus asymbiotica 8168844 YP_003038841.1 CDS dnaN NC_012962.1 1457 2557 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1457..2557 Photorhabdus asymbiotica 8168631 YP_003038842.1 CDS recF NC_012962.1 2579 3670 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2579..3670 Photorhabdus asymbiotica 8168637 YP_003038843.1 CDS gyrB NC_012962.1 3687 6104 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 3687..6104 Photorhabdus asymbiotica 8165154 YP_003038844.1 CDS asd NC_012962.1 7159 8268 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(7159..8268) Photorhabdus asymbiotica 8169274 YP_003038845.1 CDS ogrK NC_012962.1 8471 8692 R prophage p2 ogr protein complement(8471..8692) Photorhabdus asymbiotica 8165515 YP_003038846.1 CDS PAU_00007 NC_012962.1 8768 9841 R putative phage regulator complement(8768..9841) Photorhabdus asymbiotica 8166962 YP_003038847.1 CDS PAU_00008 NC_012962.1 9838 10305 R putative tail fiber protein of prophage complement(9838..10305) Photorhabdus asymbiotica 8168845 YP_003038848.1 CDS PAU_00009 NC_012962.1 10308 12923 R putative phage tail protein complement(10308..12923) Photorhabdus asymbiotica 8168846 YP_003038849.1 CDS PAU_00010 NC_012962.1 13038 13355 R putative phage tail protein complement(13038..13355) Photorhabdus asymbiotica 8168847 YP_003038850.1 CDS PAU_00011 NC_012962.1 13382 13897 R putative tail fiber component of prophage complement(13382..13897) Photorhabdus asymbiotica 8168848 YP_003038851.1 CDS PAU_00012 NC_012962.1 13908 15080 R probable major tail sheath protein complement(13908..15080) Photorhabdus asymbiotica 8168849 YP_003038852.1 CDS PAU_00013 NC_012962.1 15482 16042 D lambda prophage DNA inversion product/tail fiber protein 15482..16042 Photorhabdus asymbiotica 8168850 YP_003038853.1 CDS tfaE NC_012962.1 16140 16745 R lambdoid prophage e14 tail fiber assembly protein-like protein complement(16140..16745) Photorhabdus asymbiotica 8168851 YP_003038854.1 CDS stfE NC_012962.1 16742 17245 R side tail fiber protein homolog from lambdoid prophage e14 (fragment) complement(16742..17245) Photorhabdus asymbiotica 8167494 YP_003038855.1 CDS PAU_00016 NC_012962.1 17245 18372 R probable variable tail fibre protein complement(17245..18372) Photorhabdus asymbiotica 8167684 YP_003038856.1 CDS PAU_00017 NC_012962.1 18369 18983 R putative phage tail protein complement(18369..18983) Photorhabdus asymbiotica 8168852 YP_003038857.1 CDS PAU_00018 NC_012962.1 18976 19980 R phage baseplate assembly protein complement(18976..19980) Photorhabdus asymbiotica 8168853 YP_003038858.1 CDS PAU_00019 NC_012962.1 19985 20362 R phage baseplate assembly protein complement(19985..20362) Photorhabdus asymbiotica 8168854 YP_003038859.1 CDS PAU_00020 NC_012962.1 20362 21135 R putative phage baseplate assembly protein complement(20362..21135) Photorhabdus asymbiotica 8168855 YP_003038860.1 CDS PAU_00021 NC_012962.1 21426 21563 R hypothetical protein complement(21426..21563) Photorhabdus asymbiotica 8168856 YP_003038861.1 CDS PAU_00022 NC_012962.1 21717 21953 R probable phage tail protein complement(21717..21953) Photorhabdus asymbiotica 8168857 YP_003038862.1 CDS rlsC NC_012962.1 22234 22416 R hypothetical protein complement(22234..22416) Photorhabdus asymbiotica 8168858 YP_003038863.1 CDS PAU_00024 NC_012962.1 22796 23410 D phage repressor protein ci 22796..23410 Photorhabdus asymbiotica 8164864 YP_003038864.1 CDS hin NC_012962.1 23492 24067 R putative dna-invertase complement(23492..24067) Photorhabdus asymbiotica 8168859 YP_003038865.1 CDS PAU_00026 NC_012962.1 24165 25136 D bacteriophage tail fiber protein 24165..25136 Photorhabdus asymbiotica 8169308 YP_003038866.1 CDS PAU_00027 NC_012962.1 25142 25678 D hypothetical protein 25142..25678 Photorhabdus asymbiotica 8168860 YP_003038867.1 CDS PAU_00028 NC_012962.1 25818 25946 R hypothetical protein complement(25818..25946) Photorhabdus asymbiotica 8168861 YP_003038868.1 CDS Sc/SvP NC_012962.1 26022 26519 R lambda prophage DNA inversion product/tail fiber protein complement(26022..26519) Photorhabdus asymbiotica 8168862 YP_003038869.1 CDS rpmJ NC_012962.1 26896 27036 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(26896..27036) Photorhabdus asymbiotica 8167180 YP_003038870.1 CDS rpmE2 NC_012962.1 27054 27308 R 50s ribosomal protein l31 type b complement(27054..27308) Photorhabdus asymbiotica 8164927 YP_003038871.1 CDS PAU_00032 NC_012962.1 27328 27603 D hypothetical protein 27328..27603 Photorhabdus asymbiotica 8164923 YP_003038872.1 CDS glmS NC_012962.1 27586 29415 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(27586..29415) Photorhabdus asymbiotica 8168863 YP_003038873.1 CDS glmU NC_012962.1 29525 30895 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(29525..30895) Photorhabdus asymbiotica 8167749 YP_003038874.1 CDS atpC NC_012962.1 31026 31448 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(31026..31448) Photorhabdus asymbiotica 8167750 YP_003038875.1 CDS atpD NC_012962.1 31470 32852 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(31470..32852) Photorhabdus asymbiotica 8165534 YP_003038876.1 CDS atpG NC_012962.1 32887 33750 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(32887..33750) Photorhabdus asymbiotica 8165535 YP_003038877.1 CDS atpA NC_012962.1 33809 35350 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(33809..35350) Photorhabdus asymbiotica 8165538 YP_003038878.1 CDS atpH NC_012962.1 35365 35898 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(35365..35898) Photorhabdus asymbiotica 8165532 YP_003038879.1 CDS atpF NC_012962.1 35911 36381 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(35911..36381) Photorhabdus asymbiotica 8165539 YP_003038880.1 CDS atpE NC_012962.1 36438 36677 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(36438..36677) Photorhabdus asymbiotica 8165537 YP_003038881.1 CDS atpB NC_012962.1 36726 37550 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(36726..37550) Photorhabdus asymbiotica 8165536 YP_003038882.1 CDS atpI NC_012962.1 37581 37958 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(37581..37958) Photorhabdus asymbiotica 8165533 YP_003038883.1 CDS gidB NC_012962.1 38568 39209 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(38568..39209) Photorhabdus asymbiotica 8165540 YP_003038884.1 CDS gidA NC_012962.1 39202 41091 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(39202..41091) Photorhabdus asymbiotica 8167745 YP_003038885.1 CDS mioC NC_012962.1 41470 41931 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(41470..41931) Photorhabdus asymbiotica 8167744 YP_003038886.1 CDS asnC NC_012962.1 42002 42463 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(42002..42463) Photorhabdus asymbiotica 8166332 YP_003038887.1 CDS asnA NC_012962.1 42552 43622 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 42552..43622 Photorhabdus asymbiotica 8165518 YP_003038888.1 CDS yieM NC_012962.1 43628 45085 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein complement(43628..45085) Photorhabdus asymbiotica 8165517 YP_003038889.1 CDS ravA NC_012962.1 45090 46601 R interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA complement(45090..46601) Photorhabdus asymbiotica 8168447 YP_003038890.1 CDS rbsD NC_012962.1 46871 47275 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 46871..47275 Photorhabdus asymbiotica 8165137 YP_003038891.1 CDS rbsA NC_012962.1 47283 48788 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP binding protein 47283..48788 Photorhabdus asymbiotica 8165142 YP_003038892.1 CDS rbsC NC_012962.1 48795 49766 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease protein 48795..49766 Photorhabdus asymbiotica 8165139 YP_003038893.1 CDS rbsB NC_012962.1 49791 50681 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 49791..50681 Photorhabdus asymbiotica 8165141 YP_003038894.1 CDS rbsK NC_012962.1 50853 51782 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 50853..51782 Photorhabdus asymbiotica 8165140 YP_003038895.1 CDS rbsR NC_012962.1 51785 52786 D DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 51785..52786 Photorhabdus asymbiotica 8165143 YP_003038896.1 CDS yieO NC_012962.1 52783 54174 R putative transport protein complement(52783..54174) Photorhabdus asymbiotica 8165144 YP_003038897.1 CDS PAU_00058 NC_012962.1 54345 54569 R hypothetical protein complement(54345..54569) Photorhabdus asymbiotica 8164953 YP_003038898.1 CDS yhbX NC_012962.1 60039 61622 R outer-membrane protein yhbx complement(60039..61622) Photorhabdus asymbiotica 8169203 YP_003038899.1 CDS actP NC_012962.1 61771 63420 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(61771..63420) Photorhabdus asymbiotica 8167591 YP_003038900.1 CDS yjcH NC_012962.1 63417 63728 R hypothetical protein complement(63417..63728) Photorhabdus asymbiotica 8166738 YP_003038901.1 CDS acs NC_012962.1 63794 65749 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(63794..65749) Photorhabdus asymbiotica 8164970 YP_003038902.1 CDS sodA NC_012962.1 66060 66749 D SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 66060..66749 Photorhabdus asymbiotica 8166737 YP_003038903.1 CDS yiiM NC_012962.1 66867 67538 D hypothetical protein 66867..67538 Photorhabdus asymbiotica 8167661 YP_003038904.1 CDS orf2 NC_012962.1 68401 68709 R hypothetical protein complement(68401..68709) Photorhabdus asymbiotica 8164963 YP_003038905.1 CDS trpS NC_012962.1 68851 69888 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(68851..69888) Photorhabdus asymbiotica 8165588 YP_003038906.1 CDS gph NC_012962.1 69893 70597 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(69893..70597) Photorhabdus asymbiotica 8168368 YP_003038907.1 CDS rpe NC_012962.1 70587 71279 R ribulose-phosphate 3-epimerase complement(70587..71279) Photorhabdus asymbiotica 8169257 YP_003038908.1 CDS dam NC_012962.1 71330 72142 R DNA adenine methylase complement(71330..72142) Photorhabdus asymbiotica 8164893 YP_003038909.1 CDS damX NC_012962.1 72227 73180 R hypothetical protein complement(72227..73180) Photorhabdus asymbiotica 8169155 YP_003038910.1 CDS aroB NC_012962.1 73302 74402 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(73302..74402) Photorhabdus asymbiotica 8169156 YP_003038911.1 CDS aroK NC_012962.1 74449 74970 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(74449..74970) Photorhabdus asymbiotica 8165499 YP_003038912.1 CDS hofQ NC_012962.1 75340 76374 R hypothetical protein complement(75340..76374) Photorhabdus asymbiotica 8165505 YP_003038913.1 CDS PAU_00074 NC_012962.1 76367 76912 R hypothetical protein complement(76367..76912) Photorhabdus asymbiotica 8167303 YP_003038914.1 CDS yrfC NC_012962.1 76899 77453 R hypothetical protein complement(76899..77453) Photorhabdus asymbiotica 8168865 YP_003038915.1 CDS yrfD NC_012962.1 77450 78280 R hypothetical protein complement(77450..78280) Photorhabdus asymbiotica 8169181 YP_003038916.1 CDS mrcA NC_012962.1 78400 80928 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 78400..80928 Photorhabdus asymbiotica 8169182 YP_003038917.1 CDS nudE NC_012962.1 80979 81578 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(80979..81578) Photorhabdus asymbiotica 8166362 YP_003038918.1 CDS yrfF NC_012962.1 81952 82884 D putative membrane protein igaa homolog 81952..82884 Photorhabdus asymbiotica 8166941 YP_003038919.1 CDS yrfF NC_012962.1 82884 83981 D hypothetical membrane protein yrff 82884..83981 Photorhabdus asymbiotica 8169183 YP_003038920.1 CDS hslR NC_012962.1 84038 84454 D ribosome-associated heat shock protein 15 84038..84454 Photorhabdus asymbiotica 8169184 YP_003038921.1 CDS hslO NC_012962.1 84481 85353 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 84481..85353 Photorhabdus asymbiotica 8167334 YP_003038922.1 CDS pckA NC_012962.1 85569 87188 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 85569..87188 Photorhabdus asymbiotica 8167333 YP_003038923.1 CDS yhhW NC_012962.1 87237 87602 R hypothetical protein complement(87237..87602) Photorhabdus asymbiotica 8165647 YP_003038924.1 CDS yhhW NC_012962.1 87642 88046 R hypothetical protein complement(87642..88046) Photorhabdus asymbiotica 8167609 YP_003038925.1 CDS PAU_00086 NC_012962.1 88606 89970 D two-component sensor kinase-like protein 88606..89970 Photorhabdus asymbiotica 8169204 YP_003038926.1 CDS PAU_00087 NC_012962.1 89970 90599 D two component transcriptional regulator, luxr family 89970..90599 Photorhabdus asymbiotica 8168866 YP_003038927.1 CDS PAU_00088 NC_012962.1 90700 91188 D hypothetical protein 90700..91188 Photorhabdus asymbiotica 8168867 YP_003038928.1 CDS PAU_00089 NC_012962.1 91961 92314 D hypothetical protein 91961..92314 Photorhabdus asymbiotica 8168868 YP_003038929.1 CDS PAU_00090 NC_012962.1 92399 92599 D hypothetical protein 92399..92599 Photorhabdus asymbiotica 8168869 YP_003038930.1 CDS pulA NC_012962.1 92710 95982 D alpha-dextrin endo-1,6-alpha-glucosidase (pullulanase) 92710..95982 Photorhabdus asymbiotica 8168870 YP_003038931.1 CDS cynS NC_012962.1 96316 96786 D catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 96316..96786 Photorhabdus asymbiotica 8168353 YP_003038932.1 CDS PAU_00093 NC_012962.1 96979 98490 R putative monooxygenase complement(96979..98490) Photorhabdus asymbiotica 8169124 YP_003038933.1 CDS PAU_00094 NC_012962.1 98517 99392 R hypothetical protein complement(98517..99392) Photorhabdus asymbiotica 8168871 YP_003038934.1 CDS PAU_00095 NC_012962.1 100202 100687 D putative transmembrane protein 100202..100687 Photorhabdus asymbiotica 8168872 YP_003038935.1 CDS PAU_00096 NC_012962.1 100669 101160 D hypothetical protein 100669..101160 Photorhabdus asymbiotica 8168873 YP_003038936.1 CDS PAU_00097 NC_012962.1 101469 101765 D hypothetical protein 101469..101765 Photorhabdus asymbiotica 8168874 YP_003038937.1 CDS yhiN NC_012962.1 101805 103046 R hypothetical protein complement(101805..103046) Photorhabdus asymbiotica 8168875 YP_003038938.1 CDS pitA NC_012962.1 103290 104780 D phosphate transporter; low-affinity inorganic phosphate transporter 1 103290..104780 Photorhabdus asymbiotica 8167611 YP_003038939.1 CDS uspB NC_012962.1 104955 105326 R ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB complement(104955..105326) Photorhabdus asymbiotica 8168757 YP_003038940.1 CDS PAU_00101 NC_012962.1 105813 106292 D hypothetical protein 105813..106292 Photorhabdus asymbiotica 8168426 YP_003038941.1 CDS PAU_00102 NC_012962.1 106637 106819 R hypothetical protein complement(106637..106819) Photorhabdus asymbiotica 8168876 YP_003038942.1 CDS PAU_00103 NC_012962.1 106822 107607 R hypothetical protein complement(106822..107607) Photorhabdus asymbiotica 8168877 YP_003038943.1 CDS PAU_00104 NC_012962.1 107627 107767 D hypothetical protein 107627..107767 Photorhabdus asymbiotica 8168878 YP_003038944.1 CDS uspA NC_012962.1 108580 109011 D The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general stress endurance activity.; universal stress protein a 108580..109011 Photorhabdus asymbiotica 8168879 YP_003038945.1 CDS gdhA NC_012962.1 109269 110612 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 109269..110612 Photorhabdus asymbiotica 8168425 YP_003038946.1 CDS yhiQ NC_012962.1 110648 111391 R predicted SAM-dependent methyltransferase; putative methyltransferase complement(110648..111391) Photorhabdus asymbiotica 8169327 YP_003038947.1 CDS opdA NC_012962.1 111397 113439 R oligopeptidase A complement(111397..113439) Photorhabdus asymbiotica 8167613 YP_003038948.1 CDS PAU_00109 NC_012962.1 114306 115229 D hypothetical protein 114306..115229 Photorhabdus asymbiotica 8169205 YP_003038949.1 CDS cipB NC_012962.1 116157 116477 D hypothetical protein 116157..116477 Photorhabdus asymbiotica 8168880 YP_003038950.1 CDS PAU_00111 NC_012962.1 117119 118255 D l-arginine:lysine amidinotransferase, putative 117119..118255 Photorhabdus asymbiotica 8168577 YP_003038951.1 CDS PAU_00112 NC_012962.1 118264 119220 D hypothetical protein 118264..119220 Photorhabdus asymbiotica 8168881 YP_003038952.1 CDS PAU_00113 NC_012962.1 119271 120146 D hypothetical protein 119271..120146 Photorhabdus asymbiotica 8168882 YP_003038953.1 CDS PAU_00114 NC_012962.1 120455 121345 D hypothetical protein 120455..121345 Photorhabdus asymbiotica 8168883 YP_003038954.1 CDS PAU_00115 NC_012962.1 121561 123150 D similar to penicillin-binding protein; hypothetical protein 121561..123150 Photorhabdus asymbiotica 8168884 YP_003038955.1 CDS PAU_00116 NC_012962.1 123371 124966 D similar to penicillin binding protein, beta lactamase precursor; hypothetical protein 123371..124966 Photorhabdus asymbiotica 8168885 YP_003038956.1 CDS PAU_00117 NC_012962.1 125256 126848 D similar to penicillin binding protein, beta lactamase; hypothetical protein 125256..126848 Photorhabdus asymbiotica 8168886 YP_003038957.1 CDS PAU_00118 NC_012962.1 126988 128577 D similar to penicillin binding protein, beta lactamase; hypothetical protein 126988..128577 Photorhabdus asymbiotica 8168887 YP_003038958.1 CDS PAU_00119 NC_012962.1 129096 130604 D deoxycytidylate deaminase-like protein 129096..130604 Photorhabdus asymbiotica 8168888 YP_003038959.1 CDS uxuA NC_012962.1 130958 132145 R catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase complement(130958..132145) Photorhabdus asymbiotica 8168889 YP_003038960.1 CDS uxuR NC_012962.1 132235 133035 R uxu operon transcriptional regulator complement(132235..133035) Photorhabdus asymbiotica 8168437 YP_003038961.1 CDS PAU_00122 NC_012962.1 133116 134096 R putative c4-dicarboxylate transport system binding protein complement(133116..134096) Photorhabdus asymbiotica 8168439 YP_003038962.1 CDS PAU_00123 NC_012962.1 134396 134902 D trap-type c4-dicarboxylate transport system, small permease component 134396..134902 Photorhabdus asymbiotica 8168890 YP_003038963.1 CDS ygiK NC_012962.1 134930 136231 D dicarboxylate transport protein 134930..136231 Photorhabdus asymbiotica 8168891 YP_003038964.1 CDS uxuB NC_012962.1 136270 137727 D mannonate oxidoreductase (d-mannonate oxidoreductase) 136270..137727 Photorhabdus asymbiotica 8167575 YP_003038965.1 CDS uxaC NC_012962.1 137749 139173 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 137749..139173 Photorhabdus asymbiotica 8168438 YP_003038966.1 CDS kdgK NC_012962.1 139170 140132 D 2-dehydro-3-deoxygluconokinase (2-keto-3-deoxygluconokinase) (3-deoxy 2-oxo-d-gluconate kinase) (kdg kinase) 139170..140132 Photorhabdus asymbiotica 8168436 YP_003038967.1 CDS eda NC_012962.1 140132 140779 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 140132..140779 Photorhabdus asymbiotica 8165051 YP_003038968.1 CDS PAU_00129 NC_012962.1 140900 141382 D hypothetical protein 140900..141382 Photorhabdus asymbiotica 8168663 YP_003038969.1 CDS PAU_00130 NC_012962.1 141736 142623 R hypothetical protein complement(141736..142623) Photorhabdus asymbiotica 8168892 YP_003038970.1 CDS PAU_00131 NC_012962.1 142746 143441 D hypothetical protein 142746..143441 Photorhabdus asymbiotica 8168893 YP_003038971.1 CDS PAU_00132 NC_012962.1 143686 144165 R hypothetical protein complement(143686..144165) Photorhabdus asymbiotica 8168894 YP_003038972.1 CDS glpD NC_012962.1 144497 145999 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(144497..145999) Photorhabdus asymbiotica 8168895 YP_003038973.1 CDS glpR NC_012962.1 146355 147113 R represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR complement(146355..147113) Photorhabdus asymbiotica 8167760 YP_003038974.1 CDS glpG NC_012962.1 147130 147894 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG complement(147130..147894) Photorhabdus asymbiotica 8167766 YP_003038975.1 CDS glpE NC_012962.1 147989 148324 R thiosulfate sulfurtransferase GlpE complement(147989..148324) Photorhabdus asymbiotica 8167763 YP_003038976.1 CDS gntY NC_012962.1 148420 148995 R cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein complement(148420..148995) Photorhabdus asymbiotica 8167761 YP_003038977.1 CDS gntX NC_012962.1 149055 149519 R hypothetical protein complement(149055..149519) Photorhabdus asymbiotica 8169254 YP_003038978.1 CDS OSJNAa0079B05.15 NC_012962.1 149494 149949 R hypothetical protein complement(149494..149949) Photorhabdus asymbiotica 8169253 YP_003038979.1 CDS tyrS2 NC_012962.1 150369 151568 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 150369..151568 Photorhabdus asymbiotica 8165619 YP_003038980.1 CDS spnH NC_012962.1 151579 152376 R similarities with putative methyltransferase; probable o-methyltransferase complement(151579..152376) Photorhabdus asymbiotica 8168391 YP_003038981.1 CDS PAU_00142 NC_012962.1 152379 154031 R predicted fe-s oxidoreductase complement(152379..154031) Photorhabdus asymbiotica 8167672 YP_003038982.1 CDS PAU_00143 NC_012962.1 154042 155025 R hypothetical protein complement(154042..155025) Photorhabdus asymbiotica 8168896 YP_003038983.1 CDS PAU_00144 NC_012962.1 155076 155990 R hypothetical protein complement(155076..155990) Photorhabdus asymbiotica 8168897 YP_003038984.1 CDS PAU_00145 NC_012962.1 156089 156676 R hypothetical protein complement(156089..156676) Photorhabdus asymbiotica 8168898 YP_003038985.1 CDS ydeF NC_012962.1 157600 158817 D MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients; putative membrane transport protein 157600..158817 Photorhabdus asymbiotica 8168899 YP_003038986.1 CDS PAU_00147 NC_012962.1 158880 159164 R hypothetical protein complement(158880..159164) Photorhabdus asymbiotica 8165426 YP_003038987.1 CDS bioH NC_012962.1 159164 159940 D carboxylesterase BioH 159164..159940 Photorhabdus asymbiotica 8168900 YP_003038988.1 CDS PAU_00149 NC_012962.1 160538 160837 D phage n15 protein gp48 160538..160837 Photorhabdus asymbiotica 8165567 YP_003038989.1 CDS yhgG NC_012962.1 160962 161201 R putative DNA-binding transcriptional regulator protein complement(160962..161201) Photorhabdus asymbiotica 8168901 YP_003038990.1 CDS feoB NC_012962.1 161211 163523 R cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B complement(161211..163523) Photorhabdus asymbiotica 8167607 YP_003038991.1 CDS feoA NC_012962.1 163586 163810 R iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions.; ferrous iron transport protein A complement(163586..163810) Photorhabdus asymbiotica 8166530 YP_003038992.1 CDS yhgF NC_012962.1 164054 166408 R hypothetical protein complement(164054..166408) Photorhabdus asymbiotica 8166529 YP_003038993.1 CDS PAU_00154 NC_012962.1 166684 166794 R hypothetical protein complement(166684..166794) Photorhabdus asymbiotica 8167606 YP_003038994.1 CDS greB NC_012962.1 166879 167352 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB complement(166879..167352) Photorhabdus asymbiotica 8168902 YP_003038995.1 CDS PAU_00156 NC_012962.1 167377 167598 R hypothetical protein complement(167377..167598) Photorhabdus asymbiotica 8169264 YP_003038996.1 CDS PAU_00157 NC_012962.1 167939 168655 D hypothetical protein 167939..168655 Photorhabdus asymbiotica 8168903 YP_003038997.1 CDS iscS NC_012962.1 168701 169882 D cysteine desulfurase 168701..169882 Photorhabdus asymbiotica 8168904 YP_003038998.1 CDS PAU_00159 NC_012962.1 169905 171098 D MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients; MFS transporter protein 169905..171098 Photorhabdus asymbiotica 8165026 YP_003038999.1 CDS ompR NC_012962.1 172454 173173 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 172454..173173 Photorhabdus asymbiotica 8168905 YP_003039000.1 CDS envZ NC_012962.1 173170 174501 D membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 173170..174501 Photorhabdus asymbiotica 8165574 YP_003039001.1 CDS pstS NC_012962.1 174514 175722 D phosphate ABC transporter periplasmic substrate-binding protein PstS 174514..175722 Photorhabdus asymbiotica 8168679 YP_003039002.1 CDS pstC NC_012962.1 175931 176902 D part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC 175931..176902 Photorhabdus asymbiotica 8168341 YP_003039003.1 CDS pstA NC_012962.1 176904 177788 D Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 176904..177788 Photorhabdus asymbiotica 8168340 YP_003039004.1 CDS pstB NC_012962.1 177815 178591 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 177815..178591 Photorhabdus asymbiotica 8168338 YP_003039005.1 CDS phoU NC_012962.1 178588 179325 D regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 178588..179325 Photorhabdus asymbiotica 8168339 YP_003039006.1 CDS fliY NC_012962.1 179578 180441 D putative periplasmic binding transport protein 179578..180441 Photorhabdus asymbiotica 8168736 YP_003039007.1 CDS PAU_00168 NC_012962.1 180510 181247 D amino acid ABC transporter permease 180510..181247 Photorhabdus asymbiotica 8168134 YP_003039008.1 CDS PAU_00169 NC_012962.1 181249 181992 D amino acid ABC transporter permease 181249..181992 Photorhabdus asymbiotica 8168906 YP_003039009.1 CDS yieG NC_012962.1 182111 182263 D hypothetical protein 182111..182263 Photorhabdus asymbiotica 8168907 YP_003039010.1 CDS PAU_00171 NC_012962.1 182341 182847 D transposase, orfa, is3/is911 family 182341..182847 Photorhabdus asymbiotica 8164952 YP_003039011.1 CDS insK NC_012962.1 182916 183689 D putative transposase InsK for insertion sequence element IS150 182916..183689 Photorhabdus asymbiotica 8168908 YP_003039012.1 CDS PAU_00173 NC_012962.1 183750 185213 R hypothetical protein complement(183750..185213) Photorhabdus asymbiotica 8165020 YP_003039013.1 CDS yihI NC_012962.1 185406 185918 D hypothetical protein 185406..185918 Photorhabdus asymbiotica 8168909 YP_003039014.1 CDS hemN NC_012962.1 186112 187485 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 186112..187485 Photorhabdus asymbiotica 8164960 YP_003039015.1 CDS PAU_00176 NC_012962.1 188416 188760 R hypothetical protein complement(188416..188760) Photorhabdus asymbiotica 8169299 YP_003039016.1 CDS glnG NC_012962.1 189489 190949 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) complement(189489..190949) Photorhabdus asymbiotica 8168910 YP_003039017.1 CDS glnL NC_012962.1 190953 192002 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) complement(190953..192002) Photorhabdus asymbiotica 8167755 YP_003039018.1 CDS glnA NC_012962.1 192160 193569 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(192160..193569) Photorhabdus asymbiotica 8167756 YP_003039019.1 CDS typA NC_012962.1 193977 195818 D gtp-binding protein typa/bipa (tyrosine phosphorylated protein a) 193977..195818 Photorhabdus asymbiotica 8167751 YP_003039020.1 CDS PAU_00181 NC_012962.1 195887 196456 R hypothetical protein complement(195887..196456) Photorhabdus asymbiotica 8168385 YP_003039021.1 CDS PAU_00182 NC_012962.1 197345 198799 R carbon starvation protein CstA is a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization.; carbon starvation protein csta complement(197345..198799) Photorhabdus asymbiotica 8168911 YP_003039022.1 CDS yihX NC_012962.1 198951 199562 D deleted EC_number 3.3.2.3; phosphatase 198951..199562 Photorhabdus asymbiotica 8168912 YP_003039023.1 CDS dtd NC_012962.1 199627 200064 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 199627..200064 Photorhabdus asymbiotica 8164961 YP_003039024.1 CDS yiiD NC_012962.1 200136 201053 D hypothetical protein 200136..201053 Photorhabdus asymbiotica 8168655 YP_003039025.1 CDS dinJ2 NC_012962.1 201313 201549 D hypothetical protein 201313..201549 Photorhabdus asymbiotica 8164962 YP_003039026.1 CDS ef0033 NC_012962.1 201553 201825 D hypothetical protein 201553..201825 Photorhabdus asymbiotica 8168623 YP_003039027.1 CDS yicH NC_012962.1 201883 203619 R hypothetical protein complement(201883..203619) Photorhabdus asymbiotica 8168664 YP_003039028.1 CDS hpaB NC_012962.1 204278 205831 D 4-hydroxyphenylacetate 3-monooxygenase oxygenase component 204278..205831 Photorhabdus asymbiotica 8164946 YP_003039029.1 CDS yicE NC_012962.1 205922 207307 R xanthine/uracil permease family protein complement(205922..207307) Photorhabdus asymbiotica 8167310 YP_003039030.1 CDS gltS NC_012962.1 207545 208753 D sodium/glutamate symport carrier protein (glutamate permease) 207545..208753 Photorhabdus asymbiotica 8164943 YP_003039031.1 CDS PAU_00192 NC_012962.1 209055 209822 D hypothetical protein 209055..209822 Photorhabdus asymbiotica 8167776 YP_003039032.1 CDS relB NC_012962.1 209993 210247 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 209993..210247 Photorhabdus asymbiotica 8168913 YP_003039033.1 CDS relE NC_012962.1 210237 210527 D RelE-like protein 210237..210527 Photorhabdus asymbiotica 8165161 YP_003039034.1 CDS PAU_00195 NC_012962.1 211032 211301 R hypothetical protein complement(211032..211301) Photorhabdus asymbiotica 8165162 YP_003039035.1 CDS recG NC_012962.1 212263 214383 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(212263..214383) Photorhabdus asymbiotica 8168914 YP_003039036.1 CDS fimB NC_012962.1 214807 215373 D type 1 fimbriae regulatory protein fimb 214807..215373 Photorhabdus asymbiotica 8165155 YP_003039037.1 CDS PAU_00198 NC_012962.1 215803 216420 D hypothetical protein 215803..216420 Photorhabdus asymbiotica 8166539 YP_003039038.1 CDS aufB NC_012962.1 216547 217293 D Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation; putative fimbrial chaperone 216547..217293 Photorhabdus asymbiotica 8168915 YP_003039039.1 CDS PAU_00200 NC_012962.1 217331 217897 D hypothetical protein 217331..217897 Photorhabdus asymbiotica 8165542 YP_003039040.1 CDS papA NC_012962.1 217959 218657 D hypothetical protein 217959..218657 Photorhabdus asymbiotica 8168916 YP_003039041.1 CDS PAU_00202 NC_012962.1 218793 219392 D hypothetical protein 218793..219392 Photorhabdus asymbiotica 8165639 YP_003039042.1 CDS afaB NC_012962.1 219469 220188 D Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation; similar to pilli chaperone; afab 219469..220188 Photorhabdus asymbiotica 8168762 YP_003039043.1 CDS agg3D NC_012962.1 220217 221011 D Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation; putative fimbrial chaperone 220217..221011 Photorhabdus asymbiotica 8166744 YP_003039044.1 CDS lpfC NC_012962.1 221128 223878 D outer membrane usher protein 221128..223878 Photorhabdus asymbiotica 8166768 YP_003039045.1 CDS PAU_00206 NC_012962.1 224026 225366 D hypothetical protein 224026..225366 Photorhabdus asymbiotica 8168196 YP_003039046.1 CDS yheC NC_012962.1 225496 225987 D hypothetical protein 225496..225987 Photorhabdus asymbiotica 8168763 YP_003039047.1 CDS PAU_00208 NC_012962.1 <225984 226448 D hypothetical protein <225984..226448 Photorhabdus asymbiotica 8167598 YP_003039048.1 CDS spoT NC_012962.1 226471 228588 R bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase complement(226471..228588) Photorhabdus asymbiotica 8168764 YP_003039049.1 CDS rpoZ NC_012962.1 228606 228881 R promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(228606..228881) Photorhabdus asymbiotica 8167673 YP_003039050.1 CDS gmk NC_012962.1 228936 229559 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(228936..229559) Photorhabdus asymbiotica 8164936 YP_003039051.1 CDS PAU_00212 NC_012962.1 230048 230485 D putative hth-type transcriptional regulator 230048..230485 Photorhabdus asymbiotica 8169247 YP_003039052.1 CDS PAU_00213 NC_012962.1 230778 231638 R hypothetical protein complement(230778..231638) Photorhabdus asymbiotica 8168765 YP_003039053.1 CDS PAU_00214 NC_012962.1 232545 233405 R hypothetical protein complement(232545..233405) Photorhabdus asymbiotica 8168766 YP_003039054.1 CDS PAU_00215 NC_012962.1 234276 235901 R hypothetical protein complement(234276..235901) Photorhabdus asymbiotica 8168767 YP_003039055.1 CDS PAU_00216 NC_012962.1 236281 236610 R hypothetical protein complement(236281..236610) Photorhabdus asymbiotica 8168768 YP_003039056.1 CDS PAU_00217 NC_012962.1 237254 237532 R bacteriophage n15 gp48 protein complement(237254..237532) Photorhabdus asymbiotica 8168769 YP_003039057.1 CDS s045 NC_012962.1 237723 237980 R hypothetical protein complement(237723..237980) Photorhabdus asymbiotica 8168770 YP_003039058.1 CDS PAU_00219 NC_012962.1 238434 238757 R hypothetical protein complement(238434..238757) Photorhabdus asymbiotica 8167168 YP_003039059.1 CDS PAU_00220 NC_012962.1 238757 239080 R hypothetical protein complement(238757..239080) Photorhabdus asymbiotica 8168771 YP_003039060.1 CDS ligB NC_012962.1 239330 241066 D this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 239330..241066 Photorhabdus asymbiotica 8168772 YP_003039061.1 CDS yicG NC_012962.1 241060 241677 R putative inner membrane protein complement(241060..241677) Photorhabdus asymbiotica 8164944 YP_003039062.1 CDS yidR NC_012962.1 241812 243101 D hypothetical protein 241812..243101 Photorhabdus asymbiotica 8164945 YP_003039063.1 CDS yidQ NC_012962.1 243365 243685 R hypothetical protein complement(243365..243685) Photorhabdus asymbiotica 8164951 YP_003039064.1 CDS avtA NC_012962.1 244381 245634 R transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase complement(244381..245634) Photorhabdus asymbiotica 8164950 YP_003039065.1 CDS tag NC_012962.1 246444 247001 R dna-3-methyladenine glycosylase i (3-methyladenine-dna glycosylase i constitutive) (tag i) (dna-3-methyladenine glycosidase i) complement(246444..247001) Photorhabdus asymbiotica 8165543 YP_003039066.1 CDS glyQ NC_012962.1 247197 248111 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 247197..248111 Photorhabdus asymbiotica 8167464 YP_003039067.1 CDS glyS NC_012962.1 248121 250190 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 248121..250190 Photorhabdus asymbiotica 8169244 YP_003039068.1 CDS PAU_00229 NC_012962.1 250836 251237 R phage n15 protein gp48 complement(250836..251237) Photorhabdus asymbiotica 8169206 YP_003039069.1 CDS FNV1263 NC_012962.1 251920 252057 D hypothetical protein 251920..252057 Photorhabdus asymbiotica 8168773 YP_003039070.1 CDS dppA NC_012962.1 252159 253766 D periplasmic dipeptide transport protein 252159..253766 Photorhabdus asymbiotica 8168139 YP_003039071.1 CDS dppB NC_012962.1 253983 255002 D transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB 253983..255002 Photorhabdus asymbiotica 8168641 YP_003039072.1 CDS dppC NC_012962.1 255014 255916 D dipeptide transporter 255014..255916 Photorhabdus asymbiotica 8168643 YP_003039073.1 CDS dppD NC_012962.1 255929 256909 D DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit 255929..256909 Photorhabdus asymbiotica 8168644 YP_003039074.1 CDS dppF NC_012962.1 256906 257925 D Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 256906..257925 Photorhabdus asymbiotica 8168645 YP_003039075.1 CDS yhjK NC_012962.1 258154 258894 D hypothetical protein 258154..258894 Photorhabdus asymbiotica 8168646 YP_003039076.1 CDS yhjJ NC_012962.1 259037 260521 D hypothetical protein 259037..260521 Photorhabdus asymbiotica 8167615 YP_003039077.1 CDS PAU_00238 NC_012962.1 260672 260851 D hypothetical protein 260672..260851 Photorhabdus asymbiotica 8167614 YP_003039078.1 CDS ybjE NC_012962.1 260843 261733 R hypothetical protein complement(260843..261733) Photorhabdus asymbiotica 8168774 YP_003039079.1 CDS PAU_00240 NC_012962.1 261733 262491 R hypothetical protein complement(261733..262491) Photorhabdus asymbiotica 8166596 YP_003039080.1 CDS PAU_00241 NC_012962.1 262904 263110 R hypothetical protein complement(262904..263110) Photorhabdus asymbiotica 8168775 YP_003039081.1 CDS PAU_00242 NC_012962.1 263166 264206 R hypothetical protein complement(263166..264206) Photorhabdus asymbiotica 8168776 YP_003039082.1 CDS PAU_00243 NC_012962.1 264417 264758 D hypothetical protein 264417..264758 Photorhabdus asymbiotica 8168777 YP_003039083.1 CDS PAU_00244 NC_012962.1 264816 265136 D hypothetical protein 264816..265136 Photorhabdus asymbiotica 8168778 YP_003039084.1 CDS hylA NC_012962.1 265201 269643 R hemolysin phla protein complement(265201..269643) Photorhabdus asymbiotica 8168779 YP_003039085.1 CDS phlB NC_012962.1 269705 271372 R phla hemolysin secretion/activation protein phlb complement(269705..271372) Photorhabdus asymbiotica 8167344 YP_003039086.1 CDS PAU_00247 NC_012962.1 272071 272667 R hypothetical protein complement(272071..272667) Photorhabdus asymbiotica 8168729 YP_003039087.1 CDS PAU_00248 NC_012962.1 273422 273994 R hypothetical protein complement(273422..273994) Photorhabdus asymbiotica 8168780 YP_003039088.1 CDS PAU_00249 NC_012962.1 274025 274546 R hypothetical protein complement(274025..274546) Photorhabdus asymbiotica 8168781 YP_003039089.1 CDS PAU_00250 NC_012962.1 275214 275765 R hypothetical protein complement(275214..275765) Photorhabdus asymbiotica 8168782 YP_003039090.1 CDS PAU_00251 NC_012962.1 275802 276317 R hypothetical protein complement(275802..276317) Photorhabdus asymbiotica 8168783 YP_003039091.1 CDS sdiA1 NC_012962.1 276798 277526 D putative transcription regulator SdiA 276798..277526 Photorhabdus asymbiotica 8168784 YP_003039092.1 CDS PAU_00253 NC_012962.1 277591 277824 D hypothetical protein 277591..277824 Photorhabdus asymbiotica 8167625 YP_003039093.1 CDS PAU_00254 NC_012962.1 277912 278502 R hypothetical protein complement(277912..278502) Photorhabdus asymbiotica 8168785 YP_003039094.1 CDS sdiA2 NC_012962.1 279005 279733 D putative transcription regulator SdiA 279005..279733 Photorhabdus asymbiotica 8168786 YP_003039095.1 CDS PAU_00256 NC_012962.1 279936 280955 R hypothetical protein complement(279936..280955) Photorhabdus asymbiotica 8167626 YP_003039096.1 CDS PAU_00257 NC_012962.1 281067 282569 R hypothetical protein complement(281067..282569) Photorhabdus asymbiotica 8168787 YP_003039097.1 CDS PAU_00258 NC_012962.1 282670 283041 R hypothetical protein complement(282670..283041) Photorhabdus asymbiotica 8168788 YP_003039098.1 CDS PAU_00259 NC_012962.1 283292 284311 R hypothetical protein complement(283292..284311) Photorhabdus asymbiotica 8168789 YP_003039099.1 CDS PAU_00260 NC_012962.1 284325 285923 R hypothetical protein complement(284325..285923) Photorhabdus asymbiotica 8168790 YP_003039100.1 CDS PAU_00261 NC_012962.1 285946 286872 R hypothetical protein complement(285946..286872) Photorhabdus asymbiotica 8168791 YP_003039101.1 CDS PAU_00262 NC_012962.1 286872 288842 R hypothetical protein complement(286872..288842) Photorhabdus asymbiotica 8168792 YP_003039102.1 CDS PAU_00263 NC_012962.1 289015 289284 R hypothetical protein complement(289015..289284) Photorhabdus asymbiotica 8168793 YP_003039103.1 CDS PAU_00264 NC_012962.1 289580 290272 R hypothetical protein complement(289580..290272) Photorhabdus asymbiotica 8168794 YP_003039104.1 CDS PAU_00265 NC_012962.1 290892 291038 D hypothetical protein 290892..291038 Photorhabdus asymbiotica 8168795 YP_003039105.1 CDS PAU_00266 NC_012962.1 291547 292860 R hypothetical protein complement(291547..292860) Photorhabdus asymbiotica 8168796 YP_003039106.1 CDS PAU_00267 NC_012962.1 293168 293614 R putative secreted protein complement(293168..293614) Photorhabdus asymbiotica 8168797 YP_003039107.1 CDS PAU_00268 NC_012962.1 293976 294974 R hypothetical protein complement(293976..294974) Photorhabdus asymbiotica 8168798 YP_003039108.1 CDS PAU_00269 NC_012962.1 295328 295516 R hypothetical protein complement(295328..295516) Photorhabdus asymbiotica 8168799 YP_003039109.1 CDS PAU_00270 NC_012962.1 295761 296453 R hypothetical protein complement(295761..296453) Photorhabdus asymbiotica 8168800 YP_003039110.1 CDS PAU_00271 NC_012962.1 296455 297765 R hypothetical protein complement(296455..297765) Photorhabdus asymbiotica 8168801 YP_003039111.1 CDS PAU_00272 NC_012962.1 297799 298794 R hypothetical protein complement(297799..298794) Photorhabdus asymbiotica 8168802 YP_003039112.1 CDS PAU_00273 NC_012962.1 298797 300761 R hypothetical protein complement(298797..300761) Photorhabdus asymbiotica 8168803 YP_003039113.1 CDS PAU_00274 NC_012962.1 300795 302141 R hypothetical protein complement(300795..302141) Photorhabdus asymbiotica 8168804 YP_003039114.1 CDS PAU_00275 NC_012962.1 302194 305739 R This entry represents a conserved region within several bacterial proteins that resemble ImcF, which has been proposed to be involved in cell surface reorganisation, resulting in increased adherence to epithelial cells and increased conjugation frequency.; hypothetical protein complement(302194..305739) Photorhabdus asymbiotica 8168805 YP_003039115.1 CDS PAU_00276 NC_012962.1 305736 307046 R hypothetical protein complement(305736..307046) Photorhabdus asymbiotica 8168806 YP_003039116.1 CDS PAU_00277 NC_012962.1 307169 307816 R hypothetical protein complement(307169..307816) Photorhabdus asymbiotica 8168807 YP_003039117.1 CDS PAU_00278 NC_012962.1 307813 308613 R hypothetical protein complement(307813..308613) Photorhabdus asymbiotica 8168808 YP_003039118.1 CDS PAU_00279 NC_012962.1 308610 311249 R ClpA/B-type chaperone complement(308610..311249) Photorhabdus asymbiotica 8168809 YP_003039119.1 CDS PAU_00280 NC_012962.1 311260 312030 R hypothetical protein complement(311260..312030) Photorhabdus asymbiotica 8168810 YP_003039120.1 CDS PAU_00281 NC_012962.1 312030 313382 R hypothetical protein complement(312030..313382) Photorhabdus asymbiotica 8168811 YP_003039121.1 CDS PAU_00282 NC_012962.1 313385 313939 R hypothetical protein complement(313385..313939) Photorhabdus asymbiotica 8168812 YP_003039122.1 CDS PAU_00283 NC_012962.1 313939 315225 R hypothetical protein complement(313939..315225) Photorhabdus asymbiotica 8168813 YP_003039123.1 CDS PAU_00284 NC_012962.1 315232 >316212 R hypothetical protein complement(315232..>316212) Photorhabdus asymbiotica 8168814 YP_003039124.1 CDS PAU_00285 NC_012962.1 316248 318077 R hypothetical protein complement(316248..318077) Photorhabdus asymbiotica 8168815 YP_003039125.1 CDS PAU_00286 NC_012962.1 318080 318520 R hypothetical protein complement(318080..318520) Photorhabdus asymbiotica 8168816 YP_003039126.1 CDS PAU_00287 NC_012962.1 318527 320005 R hypothetical protein complement(318527..320005) Photorhabdus asymbiotica 8168817 YP_003039127.1 CDS PAU_00288 NC_012962.1 320029 320526 R hypothetical protein complement(320029..320526) Photorhabdus asymbiotica 8168818 YP_003039128.1 CDS PAU_00289 NC_012962.1 321454 321972 D hypothetical protein 321454..321972 Photorhabdus asymbiotica 8168819 YP_003039129.1 CDS PAU_00290 NC_012962.1 322635 323477 D hypothetical protein 322635..323477 Photorhabdus asymbiotica 8168820 YP_003039130.1 CDS gor NC_012962.1 323573 324940 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 323573..324940 Photorhabdus asymbiotica 8168821 YP_003039131.1 CDS PAU_00292 NC_012962.1 325106 326020 D hypothetical protein 325106..326020 Photorhabdus asymbiotica 8169256 YP_003039132.1 CDS PAU_00293 NC_012962.1 326139 326315 D hypothetical protein 326139..326315 Photorhabdus asymbiotica 8168822 YP_003039133.1 CDS PAU_00294 NC_012962.1 326731 328149 D metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain; putative deaminase 326731..328149 Photorhabdus asymbiotica 8168823 YP_003039134.1 CDS mobB NC_012962.1 328230 328751 R in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein B complement(328230..328751) Photorhabdus asymbiotica 8168824 YP_003039135.1 CDS mobA NC_012962.1 328748 329560 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(328748..329560) Photorhabdus asymbiotica 8166343 YP_003039136.1 CDS rdoA NC_012962.1 329738 330730 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 329738..330730 Photorhabdus asymbiotica 8166342 YP_003039137.1 CDS dsbA NC_012962.1 330739 331374 D periplasmic protein disulfide isomerase I 330739..331374 Photorhabdus asymbiotica 8165150 YP_003039138.1 CDS polA NC_012962.1 331752 334541 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 331752..334541 Photorhabdus asymbiotica 8168648 YP_003039139.1 CDS PAU_00300 NC_012962.1 334605 335963 R hypothetical protein complement(334605..335963) Photorhabdus asymbiotica 8168289 YP_003039140.1 CDS engB NC_012962.1 336682 337422 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(336682..337422) Photorhabdus asymbiotica 8169207 YP_003039141.1 CDS ppiA NC_012962.1 337616 338185 D peptidyl-prolyl cis-trans isomerase A (rotamase A) 337616..338185 Photorhabdus asymbiotica 8168826 YP_003039142.1 CDS ycgJ NC_012962.1 338280 338630 R hypothetical protein complement(338280..338630) Photorhabdus asymbiotica 8168297 YP_003039143.1 CDS pabA NC_012962.1 338863 339447 D aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 338863..339447 Photorhabdus asymbiotica 8166634 YP_003039144.1 CDS argD NC_012962.1 339569 340780 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 339569..340780 Photorhabdus asymbiotica 8165631 YP_003039145.1 CDS crp NC_012962.1 340829 341470 R complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein complement(340829..341470) Photorhabdus asymbiotica 8166798 YP_003039146.1 CDS yhfA NC_012962.1 341783 342190 D hypothetical protein 341783..342190 Photorhabdus asymbiotica 8169096 YP_003039147.1 CDS prkB NC_012962.1 342316 343185 R putative phosphoribulokinase complement(342316..343185) Photorhabdus asymbiotica 8167604 YP_003039148.1 CDS yheU NC_012962.1 343206 343424 R hypothetical protein complement(343206..343424) Photorhabdus asymbiotica 8168315 YP_003039149.1 CDS yheT NC_012962.1 343421 344401 R putative hydrolase complement(343421..344401) Photorhabdus asymbiotica 8167602 YP_003039150.1 CDS PAU_00311 NC_012962.1 344504 345112 D hypothetical protein 344504..345112 Photorhabdus asymbiotica 8167601 YP_003039151.1 CDS tauD NC_012962.1 346166 346705 D taurine dioxygenase, 2-oxoglutarate-dependent (taurine dioxygenase) 346166..346705 Photorhabdus asymbiotica 8168828 YP_003039152.1 CDS murP NC_012962.1 346729 348180 R belongs to PEP-dependent PTS system; contains the PTS EIIBC domains; involved in uptake of exogenous N-acetylmuramic acid (MurNAc); requires crr-encoded enzyme IIA-glucose component; PTS system N-acetylmuramic acid transporter subunits EIIBC complement(346729..348180) Photorhabdus asymbiotica 8167470 YP_003039153.1 CDS murQ NC_012962.1 348211 349164 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase complement(348211..349164) Photorhabdus asymbiotica 8168829 YP_003039154.1 CDS PAU_00316 NC_012962.1 349198 350061 R hypothetical protein complement(349198..350061) Photorhabdus asymbiotica 8167535 YP_003039155.1 CDS PAU_00317 NC_012962.1 350321 350551 D hypothetical protein 350321..350551 Photorhabdus asymbiotica 8168830 YP_003039156.1 CDS PAU_00318 NC_012962.1 350983 351462 R hypothetical protein complement(350983..351462) Photorhabdus asymbiotica 8168831 YP_003039157.1 CDS PAU_00319 NC_012962.1 352260 352967 D hypothetical protein 352260..352967 Photorhabdus asymbiotica 8168832 YP_003039158.1 CDS PAU_00320 NC_012962.1 352957 353358 D hypothetical protein 352957..353358 Photorhabdus asymbiotica 8168833 YP_003039159.1 CDS PAU_00321 NC_012962.1 353406 353807 D putative membrane protein precursor 353406..353807 Photorhabdus asymbiotica 8168834 YP_003039160.1 CDS PAU_00322 NC_012962.1 353813 354256 D putative membrane protein precursor 353813..354256 Photorhabdus asymbiotica 8168835 YP_003039161.1 CDS PAU_00323 NC_012962.1 354273 354674 D putative membrane protein precursor 354273..354674 Photorhabdus asymbiotica 8168836 YP_003039162.1 CDS PAU_00324 NC_012962.1 354680 355123 D putative membrane protein precursor 354680..355123 Photorhabdus asymbiotica 8168837 YP_003039163.1 CDS PAU_00325 NC_012962.1 355662 356585 D putative LysRfamily trancsriptional regulator 355662..356585 Photorhabdus asymbiotica 8168838 YP_003039164.1 CDS yheS NC_012962.1 356964 358934 R putative ABC transporter ATP-binding protein complement(356964..358934) Photorhabdus asymbiotica 8168839 YP_003039165.1 CDS kefG NC_012962.1 359008 359562 D required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 359008..359562 Photorhabdus asymbiotica 8167600 YP_003039166.1 CDS kefB NC_012962.1 359566 361371 D involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 359566..361371 Photorhabdus asymbiotica 8165064 YP_003039167.1 CDS yheV NC_012962.1 361383 361586 D hypothetical protein 361383..361586 Photorhabdus asymbiotica 8165063 YP_003039168.1 CDS slyD NC_012962.1 361651 362259 D rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 361651..362259 Photorhabdus asymbiotica 8167603 YP_003039169.1 CDS PAU_00331 NC_012962.1 362474 363178 D hypothetical protein 362474..363178 Photorhabdus asymbiotica 8167653 YP_003039170.1 CDS PAU_00332 NC_012962.1 363175 363489 D hypothetical protein 363175..363489 Photorhabdus asymbiotica 8168840 YP_003039171.1 CDS fkpA NC_012962.1 364425 365201 D rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 364425..365201 Photorhabdus asymbiotica 8168841 YP_003039172.1 CDS PAU_00334 NC_012962.1 365274 365456 R hypothetical protein complement(365274..365456) Photorhabdus asymbiotica 8166543 YP_003039173.1 CDS yheO NC_012962.1 365478 366212 D hypothetical protein 365478..366212 Photorhabdus asymbiotica 8165264 YP_003039174.1 CDS tusD NC_012962.1 366212 366607 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 366212..366607 Photorhabdus asymbiotica 8167599 YP_003039175.1 CDS tusC NC_012962.1 366617 366976 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 366617..366976 Photorhabdus asymbiotica 8168382 YP_003039176.1 CDS tusB NC_012962.1 366997 367284 D protein tusb (trna 2-thiouridine synthesizing protein b) 366997..367284 Photorhabdus asymbiotica 8168381 YP_003039177.1 CDS rpsL NC_012962.1 367307 367795 D 30s ribosomal protein s12 367307..367795 Photorhabdus asymbiotica 8168380 YP_003039178.1 CDS rpsG NC_012962.1 367892 368362 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 367892..368362 Photorhabdus asymbiotica 8167137 YP_003039179.1 CDS fusA NC_012962.1 368443 370551 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 368443..370551 Photorhabdus asymbiotica 8167132 YP_003039180.1 CDS tufA NC_012962.1 370622 371806 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 370622..371806 Photorhabdus asymbiotica 8168180 YP_003039181.1 CDS PAU_00343 NC_012962.1 371889 372059 D hypothetical protein 371889..372059 Photorhabdus asymbiotica 8168376 YP_003039182.1 CDS secE NC_012962.1 372081 372464 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 372081..372464 Photorhabdus asymbiotica 8165265 YP_003039183.1 CDS nusG NC_012962.1 372465 373010 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 372465..373010 Photorhabdus asymbiotica 8167629 YP_003039184.1 CDS rplK NC_012962.1 373165 373593 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 373165..373593 Photorhabdus asymbiotica 8166959 YP_003039185.1 CDS rplA NC_012962.1 373597 374298 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 373597..374298 Photorhabdus asymbiotica 8164904 YP_003039186.1 CDS rplJ NC_012962.1 374608 375105 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 374608..375105 Photorhabdus asymbiotica 8164896 YP_003039187.1 CDS rplL NC_012962.1 375169 375534 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 375169..375534 Photorhabdus asymbiotica 8164903 YP_003039188.1 CDS rpoB NC_012962.1 375873 379901 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 375873..379901 Photorhabdus asymbiotica 8164905 YP_003039189.1 CDS rpoC NC_012962.1 379957 384252 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 379957..384252 Photorhabdus asymbiotica 8164929 YP_003039190.1 CDS PAU_00352 NC_012962.1 384934 385215 D prophage protein gp48 384934..385215 Photorhabdus asymbiotica 8164930 YP_003039191.1 CDS PAU_00353 NC_012962.1 385350 385553 D putative phage transcriptional regulator 385350..385553 Photorhabdus asymbiotica 8165266 YP_003039192.1 CDS chpR NC_012962.1 385786 386043 D putative transcriptional regulator pemi-like protein 385786..386043 Photorhabdus asymbiotica 8165267 YP_003039193.1 CDS PAU_00355 NC_012962.1 386043 386372 D putative transcriptional regulator pemk-like protein 386043..386372 Photorhabdus asymbiotica 8168566 YP_003039194.1 CDS PAU_00356 NC_012962.1 386419 386826 D hypothetical protein 386419..386826 Photorhabdus asymbiotica 8165268 YP_003039195.1 CDS PAU_00357 NC_012962.1 387185 388063 D hypothetical protein 387185..388063 Photorhabdus asymbiotica 8165269 YP_003039196.1 CDS CWF19L1 NC_012962.1 388075 388749 D hypothetical protein 388075..388749 Photorhabdus asymbiotica 8165270 YP_003039197.1 CDS CsdB2 NC_012962.1 388731 389891 D NifS family aminotransferase 388731..389891 Photorhabdus asymbiotica 8169113 YP_003039198.1 CDS PAU_00360 NC_012962.1 390173 390811 D hypothetical protein 390173..390811 Photorhabdus asymbiotica 8169101 YP_003039199.1 CDS PAU_00361 NC_012962.1 390804 391586 D hypothetical protein 390804..391586 Photorhabdus asymbiotica 8165271 YP_003039200.1 CDS PAU_00362 NC_012962.1 391677 392456 D hypothetical protein 391677..392456 Photorhabdus asymbiotica 8165272 YP_003039201.1 CDS rfaB NC_012962.1 392467 393540 D UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 392467..393540 Photorhabdus asymbiotica 8165273 YP_003039202.1 CDS malM NC_012962.1 393619 394539 R maltose regulon periplasmic protein complement(393619..394539) Photorhabdus asymbiotica 8165164 YP_003039203.1 CDS lamB NC_012962.1 394660 395946 R porin involved in the transport of maltose and maltodextrins; maltoporin complement(394660..395946) Photorhabdus asymbiotica 8168954 YP_003039204.1 CDS malK NC_012962.1 395983 397179 R with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein complement(395983..397179) Photorhabdus asymbiotica 8165069 YP_003039205.1 CDS malE NC_012962.1 397477 398676 D functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein 397477..398676 Photorhabdus asymbiotica 8168953 YP_003039206.1 CDS malF NC_012962.1 398803 400359 D with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 398803..400359 Photorhabdus asymbiotica 8168950 YP_003039207.1 CDS malG NC_012962.1 400372 401262 D with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 400372..401262 Photorhabdus asymbiotica 8168951 YP_003039208.1 CDS PAU_00370 NC_012962.1 401454 403469 R hypothetical protein complement(401454..403469) Photorhabdus asymbiotica 8168952 YP_003039209.1 CDS rocF NC_012962.1 403759 404637 D arginase/agmatinase/formimionoglutamate hydrolase 403759..404637 Photorhabdus asymbiotica 8165274 YP_003039210.1 CDS PAU_00372 NC_012962.1 405149 405559 R hypothetical protein complement(405149..405559) Photorhabdus asymbiotica 8164888 YP_003039211.1 CDS PAU_00373 NC_012962.1 405733 405870 R hypothetical protein complement(405733..405870) Photorhabdus asymbiotica 8165275 YP_003039212.1 CDS PAU_00374 NC_012962.1 405883 406191 R hypothetical protein complement(405883..406191) Photorhabdus asymbiotica 8165276 YP_003039213.1 CDS PAU_00375 NC_012962.1 406363 406647 R hypothetical protein complement(406363..406647) Photorhabdus asymbiotica 8165277 YP_003039214.1 CDS malQ NC_012962.1 407603 409690 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(407603..409690) Photorhabdus asymbiotica 8165278 YP_003039215.1 CDS malP NC_012962.1 409700 412102 R maltodextrin phosphorylase complement(409700..412102) Photorhabdus asymbiotica 8168956 YP_003039216.1 CDS PAU_00378 NC_012962.1 412216 412434 R hypothetical protein complement(412216..412434) Photorhabdus asymbiotica 8168955 YP_003039217.1 CDS malT NC_012962.1 412525 415239 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 412525..415239 Photorhabdus asymbiotica 8165279 YP_003039218.1 CDS cmlA1 NC_012962.1 415376 416572 R similar to multidrug resistance proteins; hypothetical protein complement(415376..416572) Photorhabdus asymbiotica 8168957 YP_003039219.1 CDS gabT NC_012962.1 417229 418479 D 4-aminobutyrate aminotransferase activity 417229..418479 Photorhabdus asymbiotica 8168585 YP_003039220.1 CDS PAU_00382 NC_012962.1 418479 419540 D hypothetical protein 418479..419540 Photorhabdus asymbiotica 8168183 YP_003039221.1 CDS gph NC_012962.1 419554 420186 D phosphoglycolate phosphatase-like protein 419554..420186 Photorhabdus asymbiotica 8165280 YP_003039222.1 CDS PAU_00384 NC_012962.1 420247 421398 D hypothetical protein 420247..421398 Photorhabdus asymbiotica 8169258 YP_003039223.1 CDS PAU_00385 NC_012962.1 421413 421994 D hypothetical protein 421413..421994 Photorhabdus asymbiotica 8165281 YP_003039224.1 CDS hmu NC_012962.1 422213 422698 R hypothetical protein complement(422213..422698) Photorhabdus asymbiotica 8165282 YP_003039225.1 CDS PAU_00387 NC_012962.1 423006 423482 R hypothetical protein complement(423006..423482) Photorhabdus asymbiotica 8167295 YP_003039226.1 CDS PAU_00388 NC_012962.1 423866 424345 R hypothetical protein complement(423866..424345) Photorhabdus asymbiotica 8165283 YP_003039227.1 CDS thiH NC_012962.1 425040 426164 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(425040..426164) Photorhabdus asymbiotica 8165284 YP_003039228.1 CDS thiG NC_012962.1 426179 426946 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(426179..426946) Photorhabdus asymbiotica 8167500 YP_003039229.1 CDS thiS NC_012962.1 426948 427148 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS complement(426948..427148) Photorhabdus asymbiotica 8167499 YP_003039230.1 CDS thiF NC_012962.1 427145 427894 R 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate synthesis protein complement(427145..427894) Photorhabdus asymbiotica 8167503 YP_003039231.1 CDS thiE NC_012962.1 427884 428555 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase complement(427884..428555) Photorhabdus asymbiotica 8167498 YP_003039232.1 CDS thiC NC_012962.1 428539 430476 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(428539..430476) Photorhabdus asymbiotica 8167497 YP_003039233.1 CDS PAU_00395 NC_012962.1 430994 432235 D major facilitator superfamily (mfs_1) transporter 430994..432235 Photorhabdus asymbiotica 8169208 YP_003039234.1 CDS PAU_00396 NC_012962.1 432232 432786 D hypothetical protein 432232..432786 Photorhabdus asymbiotica 8165285 YP_003039235.1 CDS PFI0330c NC_012962.1 432762 434243 D hypothetical protein 432762..434243 Photorhabdus asymbiotica 8165286 YP_003039236.1 CDS PAU_00398 NC_012962.1 434349 435011 R hypothetical protein complement(434349..435011) Photorhabdus asymbiotica 8168706 YP_003039237.1 CDS nudC NC_012962.1 435111 435884 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 435111..435884 Photorhabdus asymbiotica 8165287 YP_003039238.1 CDS hemE NC_012962.1 435982 437058 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 435982..437058 Photorhabdus asymbiotica 8166940 YP_003039239.1 CDS nfi NC_012962.1 437064 437732 D Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V 437064..437732 Photorhabdus asymbiotica 8169294 YP_003039240.1 CDS yjaG NC_012962.1 437809 438399 D similar to unknown protein yjag of escherichia coli; hypothetical protein yjag 437809..438399 Photorhabdus asymbiotica 8166915 YP_003039241.1 CDS dbhA NC_012962.1 438586 438858 D dna-binding protein hu-alpha (ns2) (hu-2) 438586..438858 Photorhabdus asymbiotica 8164968 YP_003039242.1 CDS yjaH NC_012962.1 438864 439565 D hypothetical protein 438864..439565 Photorhabdus asymbiotica 8165408 YP_003039243.1 CDS purD NC_012962.1 439584 440867 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(439584..440867) Photorhabdus asymbiotica 8164969 YP_003039244.1 CDS purH NC_012962.1 440889 442514 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(440889..442514) Photorhabdus asymbiotica 8168358 YP_003039245.1 CDS pdxY NC_012962.1 442513 442638 D hypothetical protein 442513..442638 Photorhabdus asymbiotica 8165102 YP_003039246.1 CDS PAU_00408 NC_012962.1 448398 448589 R transposase, IS30 family complement(448398..448589) Photorhabdus asymbiotica 8169210 YP_003039247.1 CDS metA NC_012962.1 448809 449750 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 448809..449750 Photorhabdus asymbiotica 8165288 YP_003039248.1 CDS PAU_00410 NC_012962.1 450127 450333 R phage-like protein complement(450127..450333) Photorhabdus asymbiotica 8168989 YP_003039249.1 CDS PAU_00411 NC_012962.1 450511 450900 R hypothetical protein complement(450511..450900) Photorhabdus asymbiotica 8165289 YP_003039250.1 CDS PAU_00412 NC_012962.1 450897 451487 R hypothetical protein complement(450897..451487) Photorhabdus asymbiotica 8165290 YP_003039251.1 CDS PAU_00413 NC_012962.1 451447 451782 R hypothetical protein complement(451447..451782) Photorhabdus asymbiotica 8165291 YP_003039252.1 CDS PAU_00414 NC_012962.1 452159 >452299 R hypothetical protein complement(452159..>452299) Photorhabdus asymbiotica 8165292 YP_003039253.1 CDS PAU_00415 NC_012962.1 452519 452620 R putative integrase of prophage complement(452519..452620) Photorhabdus asymbiotica 8165293 YP_003039254.1 CDS aceB NC_012962.1 452968 454566 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 452968..454566 Photorhabdus asymbiotica 8165294 YP_003039255.1 CDS aceA NC_012962.1 454630 455931 D isocitrate lyase 454630..455931 Photorhabdus asymbiotica 8166726 YP_003039256.1 CDS aceK NC_012962.1 455996 457753 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 455996..457753 Photorhabdus asymbiotica 8166725 YP_003039257.1 CDS PAU_00419 NC_012962.1 458077 458637 D hypothetical protein 458077..458637 Photorhabdus asymbiotica 8166729 YP_003039258.1 CDS iclR NC_012962.1 459026 459856 R regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; transcriptional repressor IclR complement(459026..459856) Photorhabdus asymbiotica 8165295 YP_003039259.1 CDS PAU_00421 NC_012962.1 460388 461926 D hypothetical protein 460388..461926 Photorhabdus asymbiotica 8167350 YP_003039260.1 CDS PAU_00422 NC_012962.1 462804 463640 D hypothetical protein 462804..463640 Photorhabdus asymbiotica 8165296 YP_003039261.1 CDS PAU_00423 NC_012962.1 463633 464016 D putative integral membrane protein 463633..464016 Photorhabdus asymbiotica 8165297 YP_003039262.1 CDS PAU_00424 NC_012962.1 464064 464960 D hypothetical protein 464064..464960 Photorhabdus asymbiotica 8165298 YP_003039263.1 CDS PAU_00425 NC_012962.1 464975 466057 D similarities with isobutylamine n-hydroxylase and putative oxidoreductase; hypothetical protein 464975..466057 Photorhabdus asymbiotica 8165299 YP_003039264.1 CDS PAU_00426 NC_012962.1 466147 468714 D aminotransferase class-iii 466147..468714 Photorhabdus asymbiotica 8165300 YP_003039265.1 CDS PAU_00427 NC_012962.1 468698 469735 D hypothetical protein 468698..469735 Photorhabdus asymbiotica 8165301 YP_003039266.1 CDS orf24 NC_012962.1 470261 470965 D hypothetical protein 470261..470965 Photorhabdus asymbiotica 8165302 YP_003039267.1 CDS orf23 NC_012962.1 470962 471564 D hypothetical protein 470962..471564 Photorhabdus asymbiotica 8165591 YP_003039268.1 CDS orf22 NC_012962.1 471573 475223 D putative DNA repair ATPase 471573..475223 Photorhabdus asymbiotica 8165590 YP_003039269.1 CDS PAU_00431 NC_012962.1 475265 478891 D hypothetical protein 475265..478891 Photorhabdus asymbiotica 8165589 YP_003039270.1 CDS orf19 NC_012962.1 478891 481491 D hypothetical protein 478891..481491 Photorhabdus asymbiotica 8165303 YP_003039271.1 CDS PAU_00433 NC_012962.1 481794 482447 R probable transcriptional regulator protein; hypothetical protein complement(481794..482447) Photorhabdus asymbiotica 8165587 YP_003039272.1 CDS PAU_00434 NC_012962.1 482544 483209 D hypothetical protein 482544..483209 Photorhabdus asymbiotica 8165304 YP_003039273.1 CDS hipB NC_012962.1 483437 483748 D transcriptional regulator, hipb ortholog 483437..483748 Photorhabdus asymbiotica 8165305 YP_003039274.1 CDS hipA NC_012962.1 483752 483943 D hipa protein, dna binding regulator 483752..483943 Photorhabdus asymbiotica 8169311 YP_003039275.1 CDS PAU_00437 NC_012962.1 484085 484894 R hypothetical protein complement(484085..484894) Photorhabdus asymbiotica 8169310 YP_003039276.1 CDS PAU_00438 NC_012962.1 484899 486125 R hypothetical protein complement(484899..486125) Photorhabdus asymbiotica 8165306 YP_003039277.1 CDS PAU_00439 NC_012962.1 486784 486993 R had-superfamily hydrolase subfamily ia, variant 1 and 3 complement(486784..486993) Photorhabdus asymbiotica 8165307 YP_003039278.1 CDS PAU_00440 NC_012962.1 487299 489071 R biotin carboxylase/biotin carboxyl carrier protein complement(487299..489071) Photorhabdus asymbiotica 8165308 YP_003039279.1 CDS PAU_00441 NC_012962.1 489064 490746 R hypothetical protein complement(489064..490746) Photorhabdus asymbiotica 8165309 YP_003039280.1 CDS PAU_00442 NC_012962.1 490752 491522 R LamB/YcsF family protein complement(490752..491522) Photorhabdus asymbiotica 8165310 YP_003039281.1 CDS PAU_00443 NC_012962.1 491534 492742 R membrane protein, putative precursor complement(491534..492742) Photorhabdus asymbiotica 8165311 YP_003039282.1 CDS PAU_00444 NC_012962.1 493298 493591 D similar to hemolysin secretion/activation protein; hypothetical protein 493298..493591 Photorhabdus asymbiotica 8165312 YP_003039283.1 CDS PAU_00445 NC_012962.1 493612 502473 D hemagglutinin/hemolysin-like protein 493612..502473 Photorhabdus asymbiotica 8165313 YP_003039284.1 CDS PAU_00446 NC_012962.1 502470 502715 D hypothetical protein 502470..502715 Photorhabdus asymbiotica 8165314 YP_003039285.1 CDS hecA1 NC_012962.1 502764 503579 D hemolysin/hemagglutinin-like protein HecA precursor 502764..503579 Photorhabdus asymbiotica 8165315 YP_003039286.1 CDS PAU_00448 NC_012962.1 503576 504082 D hypothetical protein 503576..504082 Photorhabdus asymbiotica 8169287 YP_003039287.1 CDS PAU_00449 NC_012962.1 504226 504489 D hypothetical protein 504226..504489 Photorhabdus asymbiotica 8165316 YP_003039288.1 CDS PAU_00450 NC_012962.1 504492 505034 D hypothetical protein 504492..505034 Photorhabdus asymbiotica 8165317 YP_003039289.1 CDS hecA2 NC_012962.1 505189 505986 D hemolysin/hemagglutinin-like protein HecA precursor 505189..505986 Photorhabdus asymbiotica 8165318 YP_003039290.1 CDS PAU_00452 NC_012962.1 505983 506351 D putative pyocin r2_pp, tail length determination protein; otthump00000017444 (fragment) 505983..506351 Photorhabdus asymbiotica 8169288 YP_003039291.1 CDS bacA NC_012962.1 507723 509459 D similar to antibiotic synthetases - bacitracin synthetase 1 (ba1) [includes: atp-dependent isoleucin adenylase (ilea) (isoleucine activase); atp-dependent cystein adenylase (cysa) (cysteine activase); atp-dependent leucine adenylas (leua) (leucine activase); atp-dependent glutamate adenylase (glua (glutamate activase); atp-dependent isoleucine adenylase (ilea (isoleucine activase); glutamate racemase; antibiotic synthetase 507723..509459 Photorhabdus asymbiotica 8165319 YP_003039292.1 CDS PAU_00454 NC_012962.1 509642 515206 D nvolved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; putative polyketide synthase 509642..515206 Photorhabdus asymbiotica 8165545 YP_003039293.1 CDS tycC NC_012962.1 515290 521499 D similar to antibiotic synthetase - gramicidin s synthetase 2; hypothetical protein 515290..521499 Photorhabdus asymbiotica 8165320 YP_003039294.1 CDS def1 NC_012962.1 521597 522103 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 521597..522103 Photorhabdus asymbiotica 8168384 YP_003039295.1 CDS yjhP NC_012962.1 522323 523147 D putative sam-dependent methyltransferase 522323..523147 Photorhabdus asymbiotica 8168608 YP_003039296.1 CDS PAU_00458 NC_012962.1 523416 523652 D transcription regulator 523416..523652 Photorhabdus asymbiotica 8164985 YP_003039297.1 CDS PAU_00459 NC_012962.1 523745 523954 R putative DNA-binding protein complement(523745..523954) Photorhabdus asymbiotica 8165321 YP_003039298.1 CDS PAU_00460 NC_012962.1 524102 524338 D transcription regulator 524102..524338 Photorhabdus asymbiotica 8165322 YP_003039299.1 CDS pks2A NC_012962.1 524581 524736 D hypothetical protein 524581..524736 Photorhabdus asymbiotica 8165323 YP_003039300.1 CDS PAU_00462 NC_012962.1 524876 525901 D hypothetical protein 524876..525901 Photorhabdus asymbiotica 8168758 YP_003039301.1 CDS PAU_00463 NC_012962.1 525937 526578 D hypothetical protein 525937..526578 Photorhabdus asymbiotica 8165324 YP_003039302.1 CDS PAU_00464 NC_012962.1 526646 527839 R hypothetical protein complement(526646..527839) Photorhabdus asymbiotica 8165325 YP_003039303.1 CDS yibD NC_012962.1 528392 529381 D putative glycosyl transferase 528392..529381 Photorhabdus asymbiotica 8165326 YP_003039304.1 CDS iunH NC_012962.1 529404 530354 R inosine-uridine preferring nucleoside hydrolase (iu-nucleosid hydrolase) (purine nucleosidase) complement(529404..530354) Photorhabdus asymbiotica 8164938 YP_003039305.1 CDS PAU_00467 NC_012962.1 530618 531373 D LuxR family transcriptional regulator 530618..531373 Photorhabdus asymbiotica 8165046 YP_003039306.1 CDS ordL NC_012962.1 531470 532786 D probable oxidoreductase 531470..532786 Photorhabdus asymbiotica 8165327 YP_003039307.1 CDS PAU_00469 NC_012962.1 532976 533344 D hypothetical protein 532976..533344 Photorhabdus asymbiotica 8165586 YP_003039308.1 CDS feaB NC_012962.1 533373 534866 D phenylacetaldehyde dehydrogenase 533373..534866 Photorhabdus asymbiotica 8165328 YP_003039309.1 CDS PAU_00471 NC_012962.1 535373 535714 D hypothetical protein 535373..535714 Photorhabdus asymbiotica 8166521 YP_003039310.1 CDS api89 NC_012962.1 535807 535998 D putative membrane-bound sugar-binding protein 535807..535998 Photorhabdus asymbiotica 8165329 YP_003039311.1 CDS PAU_00473 NC_012962.1 536043 536333 D hypothetical protein 536043..536333 Photorhabdus asymbiotica 8166789 YP_003039312.1 CDS PAU_00474 NC_012962.1 536335 536667 D hypothetical protein 536335..536667 Photorhabdus asymbiotica 8165330 YP_003039313.1 CDS moaR NC_012962.1 537103 537762 R monoamine regulon transcriptional regulator MoaR complement(537103..537762) Photorhabdus asymbiotica 8165331 YP_003039314.1 CDS PAU_00476 NC_012962.1 538205 539701 D putative amino acid transporter membrane protein 538205..539701 Photorhabdus asymbiotica 8166341 YP_003039315.1 CDS PAU_00477 NC_012962.1 539718 540296 D hypothetical protein 539718..540296 Photorhabdus asymbiotica 8165332 YP_003039316.1 CDS PAU_00478 NC_012962.1 540859 542304 D 4-hydroxyphenylacetate 3-monooxygenase 540859..542304 Photorhabdus asymbiotica 8165333 YP_003039317.1 CDS fes NC_012962.1 542584 544149 D enterochelin esterase-like protein 542584..544149 Photorhabdus asymbiotica 8165334 YP_003039318.1 CDS phoA NC_012962.1 544255 545697 D alkaline phosphatase 544255..545697 Photorhabdus asymbiotica 8166532 YP_003039319.1 CDS attM/aiiB NC_012962.1 545981 546751 D zn-dependent hydrolase-like protein 545981..546751 Photorhabdus asymbiotica 8168730 YP_003039320.1 CDS PAU_00482 NC_012962.1 547488 549260 D hypothetical protein 547488..549260 Photorhabdus asymbiotica 8165541 YP_003039321.1 CDS PAU_00483 NC_012962.1 549357 551423 D hypothetical protein 549357..551423 Photorhabdus asymbiotica 8165335 YP_003039322.1 CDS PAU_00484 NC_012962.1 551543 551695 D hypothetical protein 551543..551695 Photorhabdus asymbiotica 8165336 YP_003039323.1 CDS PAU_00485 NC_012962.1 551704 551970 D hypothetical protein 551704..551970 Photorhabdus asymbiotica 8165337 YP_003039324.1 CDS rsmC NC_012962.1 552562 553587 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase complement(552562..553587) Photorhabdus asymbiotica 8169212 YP_003039325.1 CDS holD NC_012962.1 553716 554129 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 553716..554129 Photorhabdus asymbiotica 8167156 YP_003039326.1 CDS rimI NC_012962.1 554098 554565 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 554098..554565 Photorhabdus asymbiotica 8167307 YP_003039327.1 CDS prfC NC_012962.1 554700 556289 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 554700..556289 Photorhabdus asymbiotica 8164858 YP_003039328.1 CDS osmY NC_012962.1 556605 556982 D osmotically inducible protein y precursor 556605..556982 Photorhabdus asymbiotica 8168311 YP_003039329.1 CDS yjjU NC_012962.1 557164 558231 D hypothetical protein 557164..558231 Photorhabdus asymbiotica 8165622 YP_003039330.1 CDS yjjV NC_012962.1 558236 559009 D hypothetical protein 558236..559009 Photorhabdus asymbiotica 8164989 YP_003039331.1 CDS yeiM NC_012962.1 559299 560576 D putative transport protein 559299..560576 Photorhabdus asymbiotica 8164990 YP_003039332.1 CDS PAU_00495 NC_012962.1 560677 560907 R hypothetical protein complement(560677..560907) Photorhabdus asymbiotica 8165469 YP_003039333.1 CDS PAU_00496 NC_012962.1 560929 561651 R hypothetical protein complement(560929..561651) Photorhabdus asymbiotica 8165339 YP_003039334.1 CDS PAU_00497 NC_012962.1 561664 562452 R hypothetical protein complement(561664..562452) Photorhabdus asymbiotica 8165340 YP_003039335.1 CDS PAU_00498 NC_012962.1 562646 562912 R hypothetical protein complement(562646..562912) Photorhabdus asymbiotica 8165341 YP_003039336.1 CDS PAU_00499 NC_012962.1 562959 563681 R hypothetical protein complement(562959..563681) Photorhabdus asymbiotica 8165342 YP_003039337.1 CDS PAU_00500 NC_012962.1 563694 564470 R hypothetical protein complement(563694..564470) Photorhabdus asymbiotica 8165343 YP_003039338.1 CDS PAU_00501 NC_012962.1 564551 564841 R hypothetical protein complement(564551..564841) Photorhabdus asymbiotica 8165344 YP_003039339.1 CDS PAU_00502 NC_012962.1 564863 565585 R hypothetical protein complement(564863..565585) Photorhabdus asymbiotica 8165345 YP_003039340.1 CDS PAU_00503 NC_012962.1 565598 566365 R hypothetical protein complement(565598..566365) Photorhabdus asymbiotica 8165346 YP_003039341.1 CDS PAU_00504 NC_012962.1 566446 566736 R hypothetical protein complement(566446..566736) Photorhabdus asymbiotica 8165347 YP_003039342.1 CDS PAU_00505 NC_012962.1 566758 567480 R hypothetical protein complement(566758..567480) Photorhabdus asymbiotica 8165348 YP_003039343.1 CDS PAU_00506 NC_012962.1 567493 568257 R hypothetical protein complement(567493..568257) Photorhabdus asymbiotica 8165349 YP_003039344.1 CDS PAU_00507 NC_012962.1 568338 568604 R hypothetical protein complement(568338..568604) Photorhabdus asymbiotica 8165350 YP_003039345.1 CDS PAU_00508 NC_012962.1 568651 569373 R hypothetical protein complement(568651..569373) Photorhabdus asymbiotica 8165351 YP_003039346.1 CDS PAU_00509 NC_012962.1 569386 570162 R hypothetical protein complement(569386..570162) Photorhabdus asymbiotica 8165352 YP_003039347.1 CDS PAU_00510 NC_012962.1 570164 570505 R hypothetical protein complement(570164..570505) Photorhabdus asymbiotica 8165353 YP_003039348.1 CDS PAU_00511 NC_012962.1 570502 570999 R hypothetical protein complement(570502..570999) Photorhabdus asymbiotica 8165354 YP_003039349.1 CDS PAU_00512 NC_012962.1 570996 573014 R hypothetical protein complement(570996..573014) Photorhabdus asymbiotica 8165355 YP_003039350.1 CDS deoC NC_012962.1 573699 574478 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 573699..574478 Photorhabdus asymbiotica 8165356 YP_003039351.1 CDS deoA NC_012962.1 574552 575877 D thymidine phosphorylase 574552..575877 Photorhabdus asymbiotica 8168613 YP_003039352.1 CDS deoB NC_012962.1 575945 577168 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 575945..577168 Photorhabdus asymbiotica 8168611 YP_003039353.1 CDS deoD NC_012962.1 577245 577961 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 577245..577961 Photorhabdus asymbiotica 8168612 YP_003039354.1 CDS PAU_00517 NC_012962.1 578058 579212 R cystathionine gamma-lyase complement(578058..579212) Photorhabdus asymbiotica 8168614 YP_003039355.1 CDS mtcB NC_012962.1 579234 580601 R cystathionine beta-synthase complement(579234..580601) Photorhabdus asymbiotica 8165357 YP_003039356.1 CDS smp NC_012962.1 582186 582824 R hypothetical protein complement(582186..582824) Photorhabdus asymbiotica 8166389 YP_003039357.1 CDS serB NC_012962.1 582941 583918 D catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 582941..583918 Photorhabdus asymbiotica 8167657 YP_003039358.1 CDS radA NC_012962.1 583943 585325 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 583943..585325 Photorhabdus asymbiotica 8167638 YP_003039359.1 CDS nadR NC_012962.1 585338 586591 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 585338..586591 Photorhabdus asymbiotica 8165133 YP_003039360.1 CDS PAU_00523 NC_012962.1 587260 588006 D ABC transporter protein 587260..588006 Photorhabdus asymbiotica 8166901 YP_003039361.1 CDS yjjK NC_012962.1 588044 589711 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(588044..589711) Photorhabdus asymbiotica 8165358 YP_003039362.1 CDS PAU_00525 NC_012962.1 590121 590267 D hypothetical protein 590121..590267 Photorhabdus asymbiotica 8164988 YP_003039363.1 CDS slt NC_012962.1 590337 592253 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 590337..592253 Photorhabdus asymbiotica 8165359 YP_003039364.1 CDS trpR NC_012962.1 592311 592631 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 592311..592631 Photorhabdus asymbiotica 8167649 YP_003039365.1 CDS yjjX NC_012962.1 592667 593197 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(592667..593197) Photorhabdus asymbiotica 8168367 YP_003039366.1 CDS gpmB NC_012962.1 593252 593899 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 593252..593899 Photorhabdus asymbiotica 8164991 YP_003039367.1 CDS rob NC_012962.1 593896 594771 R right origin-binding protein complement(593896..594771) Photorhabdus asymbiotica 8169260 YP_003039368.1 CDS creA NC_012962.1 595155 595640 D hypothetical protein 595155..595640 Photorhabdus asymbiotica 8164887 YP_003039369.1 CDS arcA NC_012962.1 595822 596538 R two-component response regulator complement(595822..596538) Photorhabdus asymbiotica 8169093 YP_003039370.1 CDS thrA NC_012962.1 597306 599807 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homeserine dehydrogenase I 597306..599807 Photorhabdus asymbiotica 8169213 YP_003039371.1 CDS thrB NC_012962.1 599810 600739 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 599810..600739 Photorhabdus asymbiotica 8167504 YP_003039372.1 CDS thrC NC_012962.1 600743 602035 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 600743..602035 Photorhabdus asymbiotica 8167505 YP_003039373.1 CDS yaaA NC_012962.1 602341 603117 R hypothetical protein complement(602341..603117) Photorhabdus asymbiotica 8167506 YP_003039374.1 CDS PAU_00537 NC_012962.1 603496 604707 D hypothetical protein 603496..604707 Photorhabdus asymbiotica 8168509 YP_003039375.1 CDS tal NC_012962.1 604908 605861 D transaldolase B 604908..605861 Photorhabdus asymbiotica 8165360 YP_003039376.1 CDS mogA NC_012962.1 605949 606524 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 605949..606524 Photorhabdus asymbiotica 8167465 YP_003039377.1 CDS galT NC_012962.1 606664 607725 D catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 606664..607725 Photorhabdus asymbiotica 8166351 YP_003039378.1 CDS galK NC_012962.1 607788 608945 D catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 607788..608945 Photorhabdus asymbiotica 8168186 YP_003039379.1 CDS yaaH NC_012962.1 609025 609594 R hypothetical protein complement(609025..609594) Photorhabdus asymbiotica 8168185 YP_003039380.1 CDS dnaK NC_012962.1 609902 611812 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 609902..611812 Photorhabdus asymbiotica 8168510 YP_003039381.1 CDS dnaJ NC_012962.1 611921 613051 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 611921..613051 Photorhabdus asymbiotica 8168636 YP_003039382.1 CDS PAU_00545 NC_012962.1 613151 614431 R hypothetical protein complement(613151..614431) Photorhabdus asymbiotica 8168635 YP_003039383.1 CDS bglB NC_012962.1 614445 615878 R 6-phospho-beta-glucosidase complement(614445..615878) Photorhabdus asymbiotica 8165361 YP_003039384.1 CDS bglF NC_012962.1 615941 617389 R beta-glucoside-specific phosphotransferase system-dependent permease complement(615941..617389) Photorhabdus asymbiotica 8165558 YP_003039385.1 CDS bglG NC_012962.1 617831 618685 D cryptic beta-glucoside bgl operon antiterminator 617831..618685 Photorhabdus asymbiotica 8165559 YP_003039386.1 CDS bglP NC_012962.1 618800 620647 D beta-glucoside permease II 618800..620647 Photorhabdus asymbiotica 8165560 YP_003039387.1 CDS PAU_00550 NC_012962.1 620666 620782 D hypothetical protein 620666..620782 Photorhabdus asymbiotica 8165561 YP_003039388.1 CDS nhaA NC_012962.1 621076 622242 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 621076..622242 Photorhabdus asymbiotica 8165362 YP_003039389.1 CDS nhaR NC_012962.1 622417 623379 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 622417..623379 Photorhabdus asymbiotica 8166919 YP_003039390.1 CDS rpsT NC_012962.1 623450 623713 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(623450..623713) Photorhabdus asymbiotica 8166921 YP_003039391.1 CDS ribF NC_012962.1 624064 625008 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 624064..625008 Photorhabdus asymbiotica 8167145 YP_003039392.1 CDS ileS NC_012962.1 625033 627846 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 625033..627846 Photorhabdus asymbiotica 8166481 YP_003039393.1 CDS lspA NC_012962.1 627846 628349 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 627846..628349 Photorhabdus asymbiotica 8167356 YP_003039394.1 CDS PAU_00557 NC_012962.1 628386 628490 D hypothetical protein 628386..628490 Photorhabdus asymbiotica 8168928 YP_003039395.1 CDS fkpB NC_012962.1 628492 628962 D peptidyl-prolyl cis-trans isomerase 628492..628962 Photorhabdus asymbiotica 8165363 YP_003039396.1 CDS ispH NC_012962.1 628943 629896 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 628943..629896 Photorhabdus asymbiotica 8166544 YP_003039397.1 CDS dapB NC_012962.1 630011 630832 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 630011..630832 Photorhabdus asymbiotica 8165033 YP_003039398.1 CDS carA NC_012962.1 631268 632431 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 631268..632431 Photorhabdus asymbiotica 8169158 YP_003039399.1 CDS carB NC_012962.1 632447 635671 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 632447..635671 Photorhabdus asymbiotica 8168529 YP_003039400.1 CDS PAU_00563 NC_012962.1 635791 636405 R hypothetical protein complement(635791..636405) Photorhabdus asymbiotica 8168530 YP_003039401.1 CDS folA NC_012962.1 636584 637069 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 636584..637069 Photorhabdus asymbiotica 8165364 YP_003039402.1 CDS apaH NC_012962.1 637119 637943 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(637119..637943) Photorhabdus asymbiotica 8168142 YP_003039403.1 CDS apaG NC_012962.1 637946 638323 R protein associated with Co2+ and Mg2+ efflux; ApaG complement(637946..638323) Photorhabdus asymbiotica 8166787 YP_003039404.1 CDS ksgA NC_012962.1 638336 639154 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(638336..639154) Photorhabdus asymbiotica 8166786 YP_003039405.1 CDS pdxA NC_012962.1 639147 640148 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(639147..640148) Photorhabdus asymbiotica 8165067 YP_003039406.1 CDS surA NC_012962.1 640126 641427 R Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA complement(640126..641427) Photorhabdus asymbiotica 8168689 YP_003039407.1 CDS imp NC_012962.1 641497 643851 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(641497..643851) Photorhabdus asymbiotica 8167454 YP_003039408.1 CDS djlA NC_012962.1 644035 644853 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 644035..644853 Photorhabdus asymbiotica 8167368 YP_003039409.1 CDS rluA NC_012962.1 645092 645784 R ribosomal large subunit pseudouridine synthase A complement(645092..645784) Photorhabdus asymbiotica 8168624 YP_003039410.1 CDS rapA NC_012962.1 645946 648852 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(645946..648852) Photorhabdus asymbiotica 8164865 YP_003039411.1 CDS dinA NC_012962.1 649048 649212 R DNA polymerase II complement(649048..649212) Photorhabdus asymbiotica 8165135 YP_003039412.1 CDS rsib_orf.195 NC_012962.1 649920 650837 R hypothetical protein complement(649920..650837) Photorhabdus asymbiotica 8168619 YP_003039413.1 CDS thiQ NC_012962.1 652045 652761 R with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit complement(652045..652761) Photorhabdus asymbiotica 8167154 YP_003039414.1 CDS thiP NC_012962.1 652754 654358 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein complement(652754..654358) Photorhabdus asymbiotica 8167502 YP_003039415.1 CDS tbpA NC_012962.1 654334 655347 R part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit complement(654334..655347) Photorhabdus asymbiotica 8168514 YP_003039416.1 CDS rppH NC_012962.1 655638 656168 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 655638..656168 Photorhabdus asymbiotica 8169214 YP_003039417.1 CDS ptsP NC_012962.1 656178 658424 D member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain 656178..658424 Photorhabdus asymbiotica 8164937 YP_003039418.1 CDS lgt NC_012962.1 658499 659374 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 658499..659374 Photorhabdus asymbiotica 8168352 YP_003039419.1 CDS thyA NC_012962.1 659371 660165 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 659371..660165 Photorhabdus asymbiotica 8165080 YP_003039420.1 CDS ygjM NC_012962.1 660364 660786 R hypothetical protein complement(660364..660786) Photorhabdus asymbiotica 8167508 YP_003039421.1 CDS PAU_00584 NC_012962.1 660783 661094 R hypothetical protein complement(660783..661094) Photorhabdus asymbiotica 8167578 YP_003039422.1 CDS ppdA NC_012962.1 661731 662246 D hypothetical protein 661731..662246 Photorhabdus asymbiotica 8165365 YP_003039423.1 CDS ppdB NC_012962.1 662414 663001 D hypothetical protein 662414..663001 Photorhabdus asymbiotica 8168293 YP_003039424.1 CDS PAU_00587 NC_012962.1 663007 663474 D hypothetical protein 663007..663474 Photorhabdus asymbiotica 8168294 YP_003039425.1 CDS ppdC NC_012962.1 663471 663857 D prepilin peptidase dependent protein c 663471..663857 Photorhabdus asymbiotica 8165366 YP_003039426.1 CDS recC NC_012962.1 663835 667209 D catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 663835..667209 Photorhabdus asymbiotica 8168295 YP_003039427.1 CDS ptrA NC_012962.1 667225 670113 D protease iii (pitrilysin) 667225..670113 Photorhabdus asymbiotica 8165152 YP_003039428.1 CDS recB NC_012962.1 670110 673715 D helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 670110..673715 Photorhabdus asymbiotica 8168346 YP_003039429.1 CDS recD NC_012962.1 673715 675571 D helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 673715..675571 Photorhabdus asymbiotica 8165151 YP_003039430.1 CDS argA NC_012962.1 675817 677151 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(675817..677151) Photorhabdus asymbiotica 8165153 YP_003039431.1 CDS GE16597 NC_012962.1 677227 677331 R hypothetical protein complement(677227..677331) Photorhabdus asymbiotica 8166795 YP_003039432.1 CDS amiC NC_012962.1 677397 678644 D N-acetylmuramoyl-l-alanine amidase 677397..678644 Photorhabdus asymbiotica 8169328 YP_003039433.1 CDS PAU_00596 NC_012962.1 678778 678888 D hypothetical protein 678778..678888 Photorhabdus asymbiotica 8169215 YP_003039434.1 CDS PAU_00597 NC_012962.1 679112 679297 D hypothetical protein 679112..679297 Photorhabdus asymbiotica 8169217 YP_003039435.1 CDS mltA NC_012962.1 679294 680391 D membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 679294..680391 Photorhabdus asymbiotica 8165368 YP_003039436.1 CDS PAU_00599 NC_012962.1 680437 681252 D hypothetical protein 680437..681252 Photorhabdus asymbiotica 8166334 YP_003039437.1 CDS ygdK NC_012962.1 681249 681710 R hypothetical protein complement(681249..681710) Photorhabdus asymbiotica 8165369 YP_003039438.1 CDS csdA NC_012962.1 681714 682922 R cysteine sulfinate desulfinase complement(681714..682922) Photorhabdus asymbiotica 8167557 YP_003039439.1 CDS gcvA NC_012962.1 683371 684291 D Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 683371..684291 Photorhabdus asymbiotica 8169218 YP_003039440.1 CDS PAU_00603 NC_012962.1 684606 685001 D hypothetical protein 684606..685001 Photorhabdus asymbiotica 8168193 YP_003039441.1 CDS ygdE NC_012962.1 684994 686094 D putative RNA 2'-O-ribose methyltransferase 684994..686094 Photorhabdus asymbiotica 8165370 YP_003039442.1 CDS PAU_00605 NC_012962.1 687386 688840 D hypothetical protein 687386..688840 Photorhabdus asymbiotica 8167556 YP_003039443.1 CDS PAU_00606 NC_012962.1 688894 689289 D hypothetical protein 688894..689289 Photorhabdus asymbiotica 8165371 YP_003039444.1 CDS hasD NC_012962.1 689365 691095 D transport protein hasd 689365..691095 Photorhabdus asymbiotica 8165372 YP_003039445.1 CDS PAU_00608 NC_012962.1 691156 692490 D Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior; alkaline protease secretion protein apre 691156..692490 Photorhabdus asymbiotica 8169276 YP_003039446.1 CDS PAU_00609 NC_012962.1 692493 693866 D putative outer membrane protein 692493..693866 Photorhabdus asymbiotica 8165373 YP_003039447.1 CDS xni NC_012962.1 693863 694657 R has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX complement(693863..694657) Photorhabdus asymbiotica 8165374 YP_003039448.1 CDS PAU_00611 NC_012962.1 694687 696054 R hypothetical protein complement(694687..696054) Photorhabdus asymbiotica 8168506 YP_003039449.1 CDS queF NC_012962.1 696209 697069 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(696209..697069) Photorhabdus asymbiotica 8165375 YP_003039450.1 CDS PAU_00613 NC_012962.1 697449 698255 R hypothetical protein complement(697449..698255) Photorhabdus asymbiotica 8165132 YP_003039451.1 CDS PAU_00614 NC_012962.1 698263 699294 R hypothetical protein complement(698263..699294) Photorhabdus asymbiotica 8165376 YP_003039452.1 CDS nikM NC_012962.1 699729 700331 D hypothetical protein 699729..700331 Photorhabdus asymbiotica 8165377 YP_003039453.1 CDS hisC NC_012962.1 700548 701603 D hypothetical protein 700548..701603 Photorhabdus asymbiotica 8166923 YP_003039454.1 CDS PAU_00617 NC_012962.1 701581 702072 D hypothetical protein 701581..702072 Photorhabdus asymbiotica 8169315 YP_003039455.1 CDS PAU_00618 NC_012962.1 702251 702841 R hypothetical protein complement(702251..702841) Photorhabdus asymbiotica 8165378 YP_003039456.1 CDS PAU_00619 NC_012962.1 702838 703827 R hypothetical protein complement(702838..703827) Photorhabdus asymbiotica 8165379 YP_003039457.1 CDS PAU_00620 NC_012962.1 703830 704618 R hypothetical protein complement(703830..704618) Photorhabdus asymbiotica 8165380 YP_003039458.1 CDS sanC NC_012962.1 704651 705268 R hypothetical protein complement(704651..705268) Photorhabdus asymbiotica 8165381 YP_003039459.1 CDS PAU_00622 NC_012962.1 705299 705700 R hypothetical protein complement(705299..705700) Photorhabdus asymbiotica 8167170 YP_003039460.1 CDS yqkA NC_012962.1 705726 706256 R hypothetical protein complement(705726..706256) Photorhabdus asymbiotica 8165382 YP_003039461.1 CDS PAU_00624 NC_012962.1 706329 707462 R hypothetical protein complement(706329..707462) Photorhabdus asymbiotica 8169171 YP_003039462.1 CDS ISPlu8C1 NC_012962.1 707690 708742 D transposase, IS630 family 707690..708742 Photorhabdus asymbiotica 8165383 YP_003039463.1 CDS PAU_00626 NC_012962.1 708739 708933 R hypothetical protein complement(708739..708933) Photorhabdus asymbiotica 8165040 YP_003039464.1 CDS bmyC NC_012962.1 709091 710329 R hypothetical protein complement(709091..710329) Photorhabdus asymbiotica 8165384 YP_003039465.1 CDS PAU_00628 NC_012962.1 710366 712207 R hypothetical protein complement(710366..712207) Photorhabdus asymbiotica 8165571 YP_003039466.1 CDS PAU_00629 NC_012962.1 712277 >713299 R hypothetical protein complement(712277..>713299) Photorhabdus asymbiotica 8165385 YP_003039467.1 CDS speC NC_012962.1 713343 714431 R hypothetical protein complement(713343..714431) Photorhabdus asymbiotica 8165386 YP_003039468.1 CDS PAU_00631 NC_012962.1 714434 715741 R hypothetical protein complement(714434..715741) Photorhabdus asymbiotica 8167668 YP_003039469.1 CDS PAU_00632 NC_012962.1 715914 716552 R hypothetical protein complement(715914..716552) Photorhabdus asymbiotica 8165387 YP_003039470.1 CDS murA NC_012962.1 716626 718011 R UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(716626..718011) Photorhabdus asymbiotica 8165388 YP_003039471.1 CDS PAU_00634 NC_012962.1 718141 719460 R hypothetical protein complement(718141..719460) Photorhabdus asymbiotica 8166397 YP_003039472.1 CDS PAU_00635 NC_012962.1 720892 721443 D putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 720892..721443 Photorhabdus asymbiotica 8165389 YP_003039473.1 CDS PAU_00636 NC_012962.1 721981 722313 D hypothetical protein 721981..722313 Photorhabdus asymbiotica 8165390 YP_003039474.1 CDS truC NC_012962.1 722315 723085 D catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 722315..723085 Photorhabdus asymbiotica 8165391 YP_003039475.1 CDS PAU_00638 NC_012962.1 723318 723659 R hypothetical protein complement(723318..723659) Photorhabdus asymbiotica 8168371 YP_003039476.1 CDS yqcA NC_012962.1 724320 724769 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 724320..724769 Photorhabdus asymbiotica 8165392 YP_003039477.1 CDS yaeH NC_012962.1 724834 725220 R hypothetical protein complement(724834..725220) Photorhabdus asymbiotica 8169165 YP_003039478.1 CDS dapD NC_012962.1 725433 726257 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(725433..726257) Photorhabdus asymbiotica 8166571 YP_003039479.1 CDS glnD NC_012962.1 726287 728959 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(726287..728959) Photorhabdus asymbiotica 8169159 YP_003039480.1 CDS map NC_012962.1 729097 729894 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(729097..729894) Photorhabdus asymbiotica 8167753 YP_003039481.1 CDS rpsB NC_012962.1 730322 731047 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 730322..731047 Photorhabdus asymbiotica 8169219 YP_003039482.1 CDS tsf NC_012962.1 731200 732057 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 731200..732057 Photorhabdus asymbiotica 8167127 YP_003039483.1 CDS pyrH NC_012962.1 732204 732932 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 732204..732932 Photorhabdus asymbiotica 8168375 YP_003039484.1 CDS frr NC_012962.1 733053 733610 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 733053..733610 Photorhabdus asymbiotica 8165126 YP_003039485.1 CDS dxr NC_012962.1 733758 734954 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 733758..734954 Photorhabdus asymbiotica 8168156 YP_003039486.1 CDS uppS NC_012962.1 735298 736059 D undecaprenyl pyrophosphate synthetase 735298..736059 Photorhabdus asymbiotica 8168660 YP_003039487.1 CDS cdsA NC_012962.1 736069 736917 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 736069..736917 Photorhabdus asymbiotica 8168412 YP_003039488.1 CDS rseP NC_012962.1 736948 738303 D catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 736948..738303 Photorhabdus asymbiotica 8168549 YP_003039489.1 CDS yaeT NC_012962.1 738338 740731 D part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 738338..740731 Photorhabdus asymbiotica 8167153 YP_003039490.1 CDS hlpA NC_012962.1 740728 741339 D periplasmic chaperone 740728..741339 Photorhabdus asymbiotica 8166572 YP_003039491.1 CDS lpxD NC_012962.1 741343 742371 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 741343..742371 Photorhabdus asymbiotica 8167291 YP_003039492.1 CDS fabZ NC_012962.1 742492 742944 D (3r)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase 742492..742944 Photorhabdus asymbiotica 8168921 YP_003039493.1 CDS lpxA NC_012962.1 742948 743736 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 742948..743736 Photorhabdus asymbiotica 8166498 YP_003039494.1 CDS lpxB NC_012962.1 743741 744925 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 743741..744925 Photorhabdus asymbiotica 8168918 YP_003039495.1 CDS rnhB NC_012962.1 744922 745512 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 744922..745512 Photorhabdus asymbiotica 8168919 YP_003039496.1 CDS dnaE NC_012962.1 745721 749203 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 745721..749203 Photorhabdus asymbiotica 8164882 YP_003039497.1 CDS accA NC_012962.1 749216 750175 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 749216..750175 Photorhabdus asymbiotica 8168633 YP_003039498.1 CDS tilS NC_012962.1 750388 751716 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 750388..751716 Photorhabdus asymbiotica 8165262 YP_003039499.1 CDS rof NC_012962.1 751750 752016 R Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator complement(751750..752016) Photorhabdus asymbiotica 8167509 YP_003039500.1 CDS cutF NC_012962.1 752273 752950 D This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces.; lipoprotein involved with copper homeostasis and adhesion 752273..752950 Photorhabdus asymbiotica 8164891 YP_003039501.1 CDS proS NC_012962.1 753044 754768 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(753044..754768) Photorhabdus asymbiotica 8169111 YP_003039502.1 CDS PAU_00665 NC_012962.1 754895 755602 R hypothetical protein complement(754895..755602) Photorhabdus asymbiotica 8168318 YP_003039503.1 CDS rcsF NC_012962.1 755599 755997 R outer membrane lipoprotein complement(755599..755997) Photorhabdus asymbiotica 8165393 YP_003039504.1 CDS metQ NC_012962.1 756142 756957 R DL-methionine transporter substrate-binding subunit complement(756142..756957) Photorhabdus asymbiotica 8165148 YP_003039505.1 CDS metI NC_012962.1 757023 757676 R part of the MetNIQ methionine uptake system; DL-methionine transporter permease subunit complement(757023..757676) Photorhabdus asymbiotica 8166318 YP_003039506.1 CDS metN NC_012962.1 757669 758700 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(757669..758700) Photorhabdus asymbiotica 8168995 YP_003039507.1 CDS gmhB NC_012962.1 758844 759461 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 758844..759461 Photorhabdus asymbiotica 8166317 YP_003039508.1 CDS ISPlu6L NC_012962.1 765458 765700 D transposase, is982 family (transposase, is982 familly) 765458..765700 Photorhabdus asymbiotica 8169223 YP_003039509.1 CDS ISPlu6L NC_012962.1 765759 766217 D transposase, is982 family (transposase, is982 familly) 765759..766217 Photorhabdus asymbiotica 8165038 YP_003039510.1 CDS yafD NC_012962.1 766306 767088 D hypothetical protein 766306..767088 Photorhabdus asymbiotica 8165039 YP_003039511.1 CDS proY NC_012962.1 767434 768819 R proline-specific permease proy complement(767434..768819) Photorhabdus asymbiotica 8166573 YP_003039512.1 CDS ygcF NC_012962.1 768990 769661 D hypothetical protein 768990..769661 Photorhabdus asymbiotica 8168322 YP_003039513.1 CDS ygcM NC_012962.1 769707 770069 R putative 6-pyruvoyl tetrahydrobiopterin synthase complement(769707..770069) Photorhabdus asymbiotica 8167554 YP_003039514.1 CDS cysJ NC_012962.1 770337 772139 D catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha 770337..772139 Photorhabdus asymbiotica 8167555 YP_003039515.1 CDS cysI NC_012962.1 772139 773869 D hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 772139..773869 Photorhabdus asymbiotica 8169135 YP_003039516.1 CDS cysH NC_012962.1 773866 774600 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 773866..774600 Photorhabdus asymbiotica 8169134 YP_003039517.1 CDS PAU_00680 NC_012962.1 774933 775184 R hypothetical protein complement(774933..775184) Photorhabdus asymbiotica 8169133 YP_003039518.1 CDS cysG NC_012962.1 775341 776753 D sirohaem synthase-uroporphyrinogen III C-methyltransferase 775341..776753 Photorhabdus asymbiotica 8165394 YP_003039519.1 CDS cysD NC_012962.1 776764 777672 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 776764..777672 Photorhabdus asymbiotica 8169130 YP_003039520.1 CDS cysN NC_012962.1 778068 779126 D sulfate adenylyltransferase subunit 1 778068..779126 Photorhabdus asymbiotica 8169128 YP_003039521.1 CDS cysC NC_012962.1 779128 779760 D converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 779128..779760 Photorhabdus asymbiotica 8169140 YP_003039522.1 CDS ftsB NC_012962.1 779905 780225 D forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 779905..780225 Photorhabdus asymbiotica 8169127 YP_003039523.1 CDS ispD NC_012962.1 780231 780968 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 780231..780968 Photorhabdus asymbiotica 8168162 YP_003039524.1 CDS ispF NC_012962.1 780981 781454 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 780981..781454 Photorhabdus asymbiotica 8165029 YP_003039525.1 CDS truD NC_012962.1 781455 782507 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 781455..782507 Photorhabdus asymbiotica 8165031 YP_003039526.1 CDS surE NC_012962.1 782485 783249 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 782485..783249 Photorhabdus asymbiotica 8168372 YP_003039527.1 CDS pcm NC_012962.1 783243 783872 D catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 783243..783872 Photorhabdus asymbiotica 8167455 YP_003039528.1 CDS nlpD NC_012962.1 783981 785018 D outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD 783981..785018 Photorhabdus asymbiotica 8165648 YP_003039529.1 CDS rpoS NC_012962.1 785070 786068 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 785070..786068 Photorhabdus asymbiotica 8166926 YP_003039530.1 CDS PAU_00693 NC_012962.1 787084 787791 D hypothetical protein 787084..787791 Photorhabdus asymbiotica 8164935 YP_003039531.1 CDS PAU_00694 NC_012962.1 787801 788130 D hypothetical protein 787801..788130 Photorhabdus asymbiotica 8165395 YP_003039532.1 CDS miaE NC_012962.1 788205 788966 R trna-(ms[2]io[6]a)-hydroxylase complement(788205..788966) Photorhabdus asymbiotica 8165396 YP_003039533.1 CDS mutS NC_012962.1 788971 791526 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(788971..791526) Photorhabdus asymbiotica 8166328 YP_003039534.1 CDS PAU_00697 NC_012962.1 791997 793109 R hypothetical protein complement(791997..793109) Photorhabdus asymbiotica 8166890 YP_003039535.1 CDS PAU_00698 NC_012962.1 793615 794724 R hypothetical protein complement(793615..794724) Photorhabdus asymbiotica 8165397 YP_003039536.1 CDS PAU_00699 NC_012962.1 795359 796450 R hypothetical protein complement(795359..796450) Photorhabdus asymbiotica 8165398 YP_003039537.1 CDS fucR NC_012962.1 797272 797973 R fucose operon activator; l-fucose operon activator complement(797272..797973) Photorhabdus asymbiotica 8165399 YP_003039538.1 CDS fucK NC_012962.1 797986 799476 R L-fuculokinase complement(797986..799476) Photorhabdus asymbiotica 8168177 YP_003039539.1 CDS fucI NC_012962.1 799477 801255 R catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase complement(799477..801255) Photorhabdus asymbiotica 8168175 YP_003039540.1 CDS fucP NC_012962.1 801269 802579 R L-fucose transporter complement(801269..802579) Photorhabdus asymbiotica 8168174 YP_003039541.1 CDS fucA NC_012962.1 802999 803646 D catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 802999..803646 Photorhabdus asymbiotica 8168176 YP_003039542.1 CDS PAU_00705 NC_012962.1 803760 805115 D hypothetical protein 803760..805115 Photorhabdus asymbiotica 8168173 YP_003039543.1 CDS ygcB NC_012962.1 805738 808455 D hypothetical protein 805738..808455 Photorhabdus asymbiotica 8165400 YP_003039544.1 CDS PAU_00707 NC_012962.1 808470 810062 D hypothetical protein 808470..810062 Photorhabdus asymbiotica 8167553 YP_003039545.1 CDS PAU_00708 NC_012962.1 810071 810652 D hypothetical protein 810071..810652 Photorhabdus asymbiotica 8165401 YP_003039546.1 CDS PAU_00709 NC_012962.1 810673 811707 D hypothetical protein 810673..811707 Photorhabdus asymbiotica 8165402 YP_003039547.1 CDS PAU_00710 NC_012962.1 811707 812465 D hypothetical protein 811707..812465 Photorhabdus asymbiotica 8165403 YP_003039548.1 CDS PAU_00711 NC_012962.1 812452 813126 D hypothetical protein 812452..813126 Photorhabdus asymbiotica 8165404 YP_003039549.1 CDS torD3 NC_012962.1 813675 813827 D hypothetical protein 813675..813827 Photorhabdus asymbiotica 8165405 YP_003039550.1 CDS PAU_00713 NC_012962.1 813902 814312 R hypothetical protein complement(813902..814312) Photorhabdus asymbiotica 8167525 YP_003039551.1 CDS PAU_00714 NC_012962.1 814500 815267 R orf42; hypothetical protein complement(814500..815267) Photorhabdus asymbiotica 8165406 YP_003039552.1 CDS PAU_00715 NC_012962.1 815459 815767 R hypothetical protein complement(815459..815767) Photorhabdus asymbiotica 8168842 YP_003039553.1 CDS PAU_00716 NC_012962.1 815736 816008 R orf43; hypothetical protein complement(815736..816008) Photorhabdus asymbiotica 8167210 YP_003039554.1 CDS PAU_00717 NC_012962.1 816256 816420 R hypothetical protein complement(816256..816420) Photorhabdus asymbiotica 8167211 YP_003039555.1 CDS PAU_00718 NC_012962.1 816501 817250 R hypothetical protein complement(816501..817250) Photorhabdus asymbiotica 8167212 YP_003039556.1 CDS PAU_00719 NC_012962.1 817247 817411 R hypothetical protein complement(817247..817411) Photorhabdus asymbiotica 8167213 YP_003039557.1 CDS PAU_00720 NC_012962.1 817490 818239 R hypothetical protein complement(817490..818239) Photorhabdus asymbiotica 8167214 YP_003039558.1 CDS PAU_00721 NC_012962.1 818236 820155 R hypothetical protein complement(818236..820155) Photorhabdus asymbiotica 8167215 YP_003039559.1 CDS PAU_00722 NC_012962.1 820909 821517 R hypothetical protein complement(820909..821517) Photorhabdus asymbiotica 8167216 YP_003039560.1 CDS PAU_00723 NC_012962.1 821596 821832 R hypothetical protein complement(821596..821832) Photorhabdus asymbiotica 8167217 YP_003039561.1 CDS PAU_00724 NC_012962.1 822971 823546 R type 1 fimbriae regulatory protein; recombinase, type 1 fimbriae regulatory protein complement(822971..823546) Photorhabdus asymbiotica 8167218 YP_003039562.1 CDS smfA NC_012962.1 824135 824770 D fimbriae major subunit precursor; f15 p-fimbriae major subunit precursor 824135..824770 Photorhabdus asymbiotica 8167219 YP_003039563.1 CDS mrfB NC_012962.1 824826 825407 D fimbrial regulatory protein; fimbrial regulatory protein papH 824826..825407 Photorhabdus asymbiotica 8167655 YP_003039564.1 CDS mrfC NC_012962.1 825428 828034 D outer membrane fimbrial usher protein; outer membrane fimbrial usher protein mrfc 825428..828034 Photorhabdus asymbiotica 8166367 YP_003039565.1 CDS mrfD NC_012962.1 828072 828815 D fimbrial chaperone; hypothetical fimbrial chaperone yfcs 828072..828815 Photorhabdus asymbiotica 8166369 YP_003039566.1 CDS mrfX NC_012962.1 828846 829445 D type-1 fimbrial protein, a chain 828846..829445 Photorhabdus asymbiotica 8166370 YP_003039567.1 CDS mrfF NC_012962.1 829438 830004 D fimbriae subunit; putative yfc fimbriae subunit yfcq 829438..830004 Photorhabdus asymbiotica 8166378 YP_003039568.1 CDS mrfG NC_012962.1 830018 830509 D fimbrial-like protein; hypothetical fimbrial-like protein yfcq 830018..830509 Photorhabdus asymbiotica 8166372 YP_003039569.1 CDS mrfG NC_012962.1 830521 831066 D Members of this family of bacterial proteins are involved in regulation of length and mediation of adhesion of fimbriae. Fimbriae (also called pili), are polar filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometers, that enable bacteria to colonize the epithelium of specific host organs. Fimbriae are also responsible to promote virulence; putative minor fimbrial subunit 830521..831066 Photorhabdus asymbiotica 8166374 YP_003039570.1 CDS PAU_00733 NC_012962.1 831102 831917 D hypothetical protein 831102..831917 Photorhabdus asymbiotica 8166375 YP_003039571.1 CDS mrfJ NC_012962.1 831946 832251 D hypothetical protein 831946..832251 Photorhabdus asymbiotica 8167220 YP_003039572.1 CDS PAU_00735 NC_012962.1 833186 833614 R hypothetical protein complement(833186..833614) Photorhabdus asymbiotica 8166377 YP_003039573.1 CDS purA1 NC_012962.1 833626 834885 R adenylosuccinate synthetase 1 complement(833626..834885) Photorhabdus asymbiotica 8167221 YP_003039574.1 CDS PAU_00737 NC_012962.1 835092 835754 R similar to phosphoglycolate phosphatase; hypothetical protein complement(835092..835754) Photorhabdus asymbiotica 8168354 YP_003039575.1 CDS PAU_00738 NC_012962.1 835779 836960 R hypothetical protein complement(835779..836960) Photorhabdus asymbiotica 8167222 YP_003039576.1 CDS hisA2 NC_012962.1 836963 837751 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(836963..837751) Photorhabdus asymbiotica 8167223 YP_003039577.1 CDS gene0004 NC_012962.1 838140 838397 R hypothetical protein complement(838140..838397) Photorhabdus asymbiotica 8169313 YP_003039578.1 CDS yhaO NC_012962.1 838628 839950 R putative haaap family transport protein complement(838628..839950) Photorhabdus asymbiotica 8169329 YP_003039579.1 CDS gene0005 NC_012962.1 840600 841238 R cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma complement(840600..841238) Photorhabdus asymbiotica 8167582 YP_003039580.1 CDS fdoH2 NC_012962.1 841238 842158 R putative formate dehydrogenase-o, iron-sulfur subunit complement(841238..842158) Photorhabdus asymbiotica 8169330 YP_003039581.1 CDS fdnG NC_012962.1 842177 845224 R fdnG, alpha subunit of formate dehydrogenase-N complement(842177..845224) Photorhabdus asymbiotica 8166517 YP_003039582.1 CDS PAU_00745 NC_012962.1 845552 846631 D filamentation induced by camp protein fic; hypothetical protein 845552..846631 Photorhabdus asymbiotica 8166514 YP_003039583.1 CDS PAU_00746 NC_012962.1 847203 847874 D similar to putative lipoprotein; hypothetical protein 847203..847874 Photorhabdus asymbiotica 8167224 YP_003039584.1 CDS PAU_00747 NC_012962.1 847896 848255 D similar to putative lipoprotein; hypothetical protein 847896..848255 Photorhabdus asymbiotica 8167225 YP_003039585.1 CDS PAU_00748 NC_012962.1 848252 848923 D similar to putative lipoprotein; hypothetical protein 848252..848923 Photorhabdus asymbiotica 8167226 YP_003039586.1 CDS yeeO NC_012962.1 849084 850424 R Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs.; hypothetical protein complement(849084..850424) Photorhabdus asymbiotica 8167227 YP_003039587.1 CDS paaA NC_012962.1 851994 853130 D similarities with molybdopterin and thiamine biosynthesis protein; hypothetical protein 851994..853130 Photorhabdus asymbiotica 8165456 YP_003039588.1 CDS paaB NC_012962.1 853120 853791 D hypothetical protein 853120..853791 Photorhabdus asymbiotica 8165627 YP_003039589.1 CDS paaC NC_012962.1 853784 854662 D hypothetical protein 853784..854662 Photorhabdus asymbiotica 8165628 YP_003039590.1 CDS PAU_00753 NC_012962.1 854659 856095 D hypothetical protein 854659..856095 Photorhabdus asymbiotica 8165629 YP_003039591.1 CDS PAU_00754 NC_012962.1 856570 857049 R hypothetical protein complement(856570..857049) Photorhabdus asymbiotica 8167228 YP_003039592.1 CDS PAU_00755 NC_012962.1 857430 857585 R probable 60s ribosomal protein c1687.06c complement(857430..857585) Photorhabdus asymbiotica 8167229 YP_003039593.1 CDS PAU_00756 NC_012962.1 857691 858911 R hypothetical protein complement(857691..858911) Photorhabdus asymbiotica 8167230 YP_003039594.1 CDS PAU_00757 NC_012962.1 859138 859761 D putative tetr-family regulatory protein 859138..859761 Photorhabdus asymbiotica 8167231 YP_003039595.1 CDS PAU_00758 NC_012962.1 859862 860311 D hypothetical protein 859862..860311 Photorhabdus asymbiotica 8167232 YP_003039596.1 CDS PAU_00759 NC_012962.1 861160 862761 D similarities with lysine-tRNA ligase LysS; hypothetical protein 861160..862761 Photorhabdus asymbiotica 8167233 YP_003039597.1 CDS PAU_00760 NC_012962.1 862875 864107 D similarities with lysine-trna ligase lyss; hypothetical protein 862875..864107 Photorhabdus asymbiotica 8167234 YP_003039598.1 CDS PAU_00761 NC_012962.1 864113 865270 D The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients.; putative transport protein 864113..865270 Photorhabdus asymbiotica 8167235 YP_003039599.1 CDS fbpC NC_012962.1 866021 867076 R Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import; ferric transporter ATP-binding subunit complement(866021..867076) Photorhabdus asymbiotica 8167236 YP_003039600.1 CDS afuB NC_012962.1 867092 869170 R putative permease component of transport system for ferric iro (putative ferric transport system permease) complement(867092..869170) Photorhabdus asymbiotica 8166511 YP_003039601.1 CDS afuA NC_012962.1 869295 870326 R periplasmic ferric iron-binding protein (putative periplasmic-iron binding protein) complement(869295..870326) Photorhabdus asymbiotica 8166761 YP_003039602.1 CDS uhpC NC_012962.1 870379 871677 R putative permease; hexosephosphate transport (putative regulator protein) complement(870379..871677) Photorhabdus asymbiotica 8166760 YP_003039603.1 CDS uhpB NC_012962.1 871895 873439 R two-component sensor histidine kinase uhpb, phosphorylates uhpa complement(871895..873439) Photorhabdus asymbiotica 8168408 YP_003039604.1 CDS uhpA NC_012962.1 873436 874068 R two-component response regulator. hexose phosphate transport syste regulatory protein uhpa complement(873436..874068) Photorhabdus asymbiotica 8168407 YP_003039605.1 CDS PAU_00768 NC_012962.1 874338 874493 R hypothetical protein complement(874338..874493) Photorhabdus asymbiotica 8168406 YP_003039606.1 CDS PAU_00769 NC_012962.1 874957 875145 R hypothetical protein complement(874957..875145) Photorhabdus asymbiotica 8167237 YP_003039607.1 CDS phlA NC_012962.1 875680 877203 D phospholipase 875680..877203 Photorhabdus asymbiotica 8167238 YP_003039608.1 CDS ampC NC_012962.1 877298 878455 R Beta-lactamases are enzymes which catalyse the hydrolysis of an amide bond in the beta-lactam ring of antibiotics belonging to the penicillin/cephalosporin family.; beta-lactamase complement(877298..878455) Photorhabdus asymbiotica 8168728 YP_003039609.1 CDS agaR NC_012962.1 878857 879630 D putative aga operon transcriptional repressor of sugar metabolism 878857..879630 Photorhabdus asymbiotica 8166779 YP_003039610.1 CDS agaZ NC_012962.1 879654 880961 D putative tagatose 6-phosphate kinase 2 879654..880961 Photorhabdus asymbiotica 8166764 YP_003039611.1 CDS agaS NC_012962.1 880958 882175 D putative tagatose-6-phosphate ketose/aldose isomerase 880958..882175 Photorhabdus asymbiotica 8166767 YP_003039612.1 CDS agaV NC_012962.1 882141 882623 D pts system, n-acetylgalactosamine-specific iib component 2 (eiib-aga' (n-acetylgalactosamine-permease iib component 2) (phosphotransferas enzyme ii, b component 2) 882141..882623 Photorhabdus asymbiotica 8166765 YP_003039613.1 CDS agaC NC_012962.1 882634 883419 D pts system, n-acetylgalactosamine-specific iic component 1 (eiic-aga (n-acetylgalactosamine-permease iic component 1) 882634..883419 Photorhabdus asymbiotica 8166766 YP_003039614.1 CDS agaD NC_012962.1 883460 884302 D pts system, n-acetylgalactosamine-specific iid component (eiid-aga (n-acetylgalactosamine-permease iid component) (phosphotransferas enzyme ii, d component) 883460..884302 Photorhabdus asymbiotica 8166762 YP_003039615.1 CDS yadI NC_012962.1 884325 884759 D putative pts system iia component 884325..884759 Photorhabdus asymbiotica 8166763 YP_003039616.1 CDS gatY NC_012962.1 884769 885623 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 884769..885623 Photorhabdus asymbiotica 8166569 YP_003039617.1 CDS ast NC_012962.1 885668 887572 D similar to enterotoxin encoded by the ast gene of aeromona hydrophila; enterotoxin 885668..887572 Photorhabdus asymbiotica 8168190 YP_003039618.1 CDS PAU_00781 NC_012962.1 887678 887851 D hypothetical protein 887678..887851 Photorhabdus asymbiotica 8165524 YP_003039619.1 CDS PAU_00782 NC_012962.1 887993 888757 D hypothetical protein 887993..888757 Photorhabdus asymbiotica 8167239 YP_003039620.1 CDS PAU_00783 NC_012962.1 888750 889151 D membrane protein 888750..889151 Photorhabdus asymbiotica 8167240 YP_003039621.1 CDS PAU_00784 NC_012962.1 889432 889563 D putative membrane protein; hypothetical protein 889432..889563 Photorhabdus asymbiotica 8167241 YP_003039622.1 CDS PAU_00785 NC_012962.1 889595 889972 D similar to putative membrane protein; hypothetical protein 889595..889972 Photorhabdus asymbiotica 8167242 YP_003039623.1 CDS PAU_00786 NC_012962.1 890274 891209 D similar to putative membrane protein; hypothetical protein 890274..891209 Photorhabdus asymbiotica 8167243 YP_003039624.1 CDS PAU_00787 NC_012962.1 891202 891636 D putative membrane protein; hypothetical protein 891202..891636 Photorhabdus asymbiotica 8167244 YP_003039625.1 CDS PAU_00788 NC_012962.1 891705 892184 R similar to hcp protein; hypothetical protein complement(891705..892184) Photorhabdus asymbiotica 8167245 YP_003039626.1 CDS PAU_00789 NC_012962.1 892740 893618 D hypothetical protein 892740..893618 Photorhabdus asymbiotica 8167246 YP_003039627.1 CDS PAU_00790 NC_012962.1 894263 894961 D hypothetical protein 894263..894961 Photorhabdus asymbiotica 8167247 YP_003039628.1 CDS PAU_00791 NC_012962.1 894954 895358 D hypothetical protein 894954..895358 Photorhabdus asymbiotica 8167248 YP_003039629.1 CDS PAU_00792 NC_012962.1 895576 895743 R hypothetical protein complement(895576..895743) Photorhabdus asymbiotica 8167249 YP_003039630.1 CDS PAU_00793 NC_012962.1 896008 896547 D hypothetical protein 896008..896547 Photorhabdus asymbiotica 8167250 YP_003039631.1 CDS speD NC_012962.1 896639 897433 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(896639..897433) Photorhabdus asymbiotica 8167251 YP_003039632.1 CDS speE NC_012962.1 897465 898325 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(897465..898325) Photorhabdus asymbiotica 8167669 YP_003039633.1 CDS PAU_00796 NC_012962.1 898436 898801 R hypothetical protein complement(898436..898801) Photorhabdus asymbiotica 8167670 YP_003039634.1 CDS cueO NC_012962.1 898977 900551 D laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 898977..900551 Photorhabdus asymbiotica 8167252 YP_003039635.1 CDS hpt NC_012962.1 900900 901451 D hypoxanthine phosphoribosyltransferase 900900..901451 Photorhabdus asymbiotica 8169108 YP_003039636.1 CDS chpB NC_012962.1 901602 901943 R Bacterial cells remove plasmid-free segregants by the use of toxin/antitoxin systems, where cells that lack plasmids cannot produce the antitoxin required for survival. Several of the toxin components have similar structures, which consists of an SH3-like barrel fold, and contains an inserted beta-sheet subdomain and a C-terminal helix, despite often low sequence identities. Toxins that have this structural fold include CcdB from Escherichia coli, a topoisomerase poison that interferes with DNA gyrase activity , PemK-like YdcE from Bacillus subtilis, Kid toxin (Kis antitoxin) from the E. coli R1 plasmid , and the MazF toxin (MazE antitoxin) from E. coli.; pemk-like protein 2 complement(901602..901943) Photorhabdus asymbiotica 8167322 YP_003039637.1 CDS PAU_00800 NC_012962.1 901943 902227 R similar to transcription regulator; hypothetical protein complement(901943..902227) Photorhabdus asymbiotica 8168565 YP_003039638.1 CDS yadF NC_012962.1 902761 903414 R putative carbonic anhydrase complement(902761..903414) Photorhabdus asymbiotica 8167253 YP_003039639.1 CDS yadG NC_012962.1 903602 904528 D hypothetical abc transporter atp-binding protein yadg 903602..904528 Photorhabdus asymbiotica 8166566 YP_003039640.1 CDS yadH NC_012962.1 904525 905295 D abc transporter, integral membrane protein yadh 904525..905295 Photorhabdus asymbiotica 8166567 YP_003039641.1 CDS panD NC_012962.1 905496 905876 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(905496..905876) Photorhabdus asymbiotica 8166568 YP_003039642.1 CDS panC NC_012962.1 905957 906811 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(905957..906811) Photorhabdus asymbiotica 8165637 YP_003039643.1 CDS panB NC_012962.1 906865 907656 R 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(906865..907656) Photorhabdus asymbiotica 8165636 YP_003039644.1 CDS folK NC_012962.1 907723 908238 R 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase complement(907723..908238) Photorhabdus asymbiotica 8165635 YP_003039645.1 CDS pcnB NC_012962.1 908241 909812 R Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase I complement(908241..909812) Photorhabdus asymbiotica 8168147 YP_003039646.1 CDS yadB NC_012962.1 909892 910788 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase complement(909892..910788) Photorhabdus asymbiotica 8165649 YP_003039647.1 CDS dksA NC_012962.1 910848 911303 R RNA polymerase-binding transcription factor complement(910848..911303) Photorhabdus asymbiotica 8166565 YP_003039648.1 CDS dksA NC_012962.1 911267 911395 R hypothetical protein complement(911267..911395) Photorhabdus asymbiotica 8168627 YP_003039649.1 CDS sfsA NC_012962.1 911608 912318 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(911608..912318) Photorhabdus asymbiotica 8168628 YP_003039650.1 CDS hrpB NC_012962.1 912395 914848 D similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 912395..914848 Photorhabdus asymbiotica 8167642 YP_003039651.1 CDS mrcB NC_012962.1 914892 917372 D bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b 914892..917372 Photorhabdus asymbiotica 8167324 YP_003039652.1 CDS PAU_00815 NC_012962.1 917917 919596 D Pyocins are polypeptide toxins produced by, and active against, bacteria.; pyocin s2-like protein 917917..919596 Photorhabdus asymbiotica 8166363 YP_003039653.1 CDS PAU_00816 NC_012962.1 919596 920063 D similar to pyocin s3 immunity protein; hypothetical protein 919596..920063 Photorhabdus asymbiotica 8167254 YP_003039654.1 CDS PAU_00817 NC_012962.1 <920089 920568 D similar to pyocin s3 immunity protein; putative immunity protein <920089..920568 Photorhabdus asymbiotica 8167255 YP_003039655.1 CDS PAU_00818 NC_012962.1 920786 920884 D hypothetical protein 920786..920884 Photorhabdus asymbiotica 8167256 YP_003039656.1 CDS PAU_00819 NC_012962.1 921684 921800 R hypothetical protein complement(921684..921800) Photorhabdus asymbiotica 8167257 YP_003039657.1 CDS PAU_00820 NC_012962.1 922078 922665 R carbonic anhydrase complement(922078..922665) Photorhabdus asymbiotica 8167258 YP_003039658.1 CDS PAU_00821 NC_012962.1 923064 923339 D hypothetical protein 923064..923339 Photorhabdus asymbiotica 8167259 YP_003039659.1 CDS hemL NC_012962.1 923379 924662 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(923379..924662) Photorhabdus asymbiotica 8167260 YP_003039660.1 CDS PAU_00823 NC_012962.1 924712 925497 R hypothetical protein complement(924712..925497) Photorhabdus asymbiotica 8169298 YP_003039661.1 CDS PAU_00824 NC_012962.1 925718 925828 D similarities with hemolysin; hypothetical protein 925718..925828 Photorhabdus asymbiotica 8167261 YP_003039662.1 CDS yadR NC_012962.1 925954 926301 D hypothetical protein 925954..926301 Photorhabdus asymbiotica 8167262 YP_003039663.1 CDS btuF NC_012962.1 926390 927217 R solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF complement(926390..927217) Photorhabdus asymbiotica 8166570 YP_003039664.1 CDS mtnA NC_012962.1 927367 928068 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(927367..928068) Photorhabdus asymbiotica 8168523 YP_003039665.1 CDS dgt NC_012962.1 928195 929721 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 928195..929721 Photorhabdus asymbiotica 8166392 YP_003039666.1 CDS barA NC_012962.1 929726 932056 R signal transduction histidine-protein kinase complement(929726..932056) Photorhabdus asymbiotica 8168617 YP_003039667.1 CDS rumA NC_012962.1 932148 933479 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 932148..933479 Photorhabdus asymbiotica 8165548 YP_003039668.1 CDS relA NC_012962.1 933721 935979 D (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase 933721..935979 Photorhabdus asymbiotica 8167162 YP_003039669.1 CDS mazG NC_012962.1 936081 936860 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 936081..936860 Photorhabdus asymbiotica 8165160 YP_003039670.1 CDS nad2 NC_012962.1 937428 938573 D hypothetical protein 937428..938573 Photorhabdus asymbiotica 8168965 YP_003039671.1 CDS PAU_00834 NC_012962.1 938566 938982 D hypothetical protein 938566..938982 Photorhabdus asymbiotica 8166895 YP_003039672.1 CDS vgaB NC_012962.1 938979 939197 D hypothetical protein 938979..939197 Photorhabdus asymbiotica 8167263 YP_003039673.1 CDS PAU_00836 NC_012962.1 939365 939463 R hypothetical protein complement(939365..939463) Photorhabdus asymbiotica 8168444 YP_003039674.1 CDS PAU_00837 NC_012962.1 939583 940305 R hypothetical protein complement(939583..940305) Photorhabdus asymbiotica 8167264 YP_003039675.1 CDS PAU_00838 NC_012962.1 940306 940926 R hypothetical protein complement(940306..940926) Photorhabdus asymbiotica 8167265 YP_003039676.1 CDS PAU_00839 NC_012962.1 940928 941275 R hypothetical protein complement(940928..941275) Photorhabdus asymbiotica 8167266 YP_003039677.1 CDS pyrG NC_012962.1 941731 943368 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 941731..943368 Photorhabdus asymbiotica 8167267 YP_003039678.1 CDS eno NC_012962.1 943441 944742 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 943441..944742 Photorhabdus asymbiotica 8165125 YP_003039679.1 CDS pln NC_012962.1 945114 945326 D sugar fermentation stimulation protein b 945114..945326 Photorhabdus asymbiotica 8168676 YP_003039680.1 CDS orf80 NC_012962.1 945827 946564 R transcriptional regulator complement(945827..946564) Photorhabdus asymbiotica 8168760 YP_003039681.1 CDS orf78 NC_012962.1 947248 948132 R transcriptional regulator complement(947248..948132) Photorhabdus asymbiotica 8165617 YP_003039682.1 CDS PAU_00845 NC_012962.1 948543 949928 D hypothetical protein 948543..949928 Photorhabdus asymbiotica 8165616 YP_003039683.1 CDS PAU_00846 NC_012962.1 950575 951615 D hypothetical protein 950575..951615 Photorhabdus asymbiotica 8167268 YP_003039684.1 CDS PAU_00847 NC_012962.1 951625 952164 D hypothetical protein 951625..952164 Photorhabdus asymbiotica 8167269 YP_003039685.1 CDS PAU_00848 NC_012962.1 952204 952659 D hypothetical protein 952204..952659 Photorhabdus asymbiotica 8167270 YP_003039686.1 CDS PAU_00849 NC_012962.1 952656 953501 D hypothetical protein 952656..953501 Photorhabdus asymbiotica 8167271 YP_003039687.1 CDS PAU_00850 NC_012962.1 953506 954639 D hypothetical protein 953506..954639 Photorhabdus asymbiotica 8167272 YP_003039688.1 CDS tmk NC_012962.1 954632 955303 D thymidylate kinase-like protein 954632..955303 Photorhabdus asymbiotica 8167273 YP_003039689.1 CDS PAU_00852 NC_012962.1 955350 956534 D putative membrane protein major facilitator superfamily mfs_1 955350..956534 Photorhabdus asymbiotica 8167513 YP_003039690.1 CDS PAU_00853 NC_012962.1 956946 957908 R hypothetical protein complement(956946..957908) Photorhabdus asymbiotica 8167274 YP_003039691.1 CDS orf74 NC_012962.1 958931 960124 R hypothetical protein complement(958931..960124) Photorhabdus asymbiotica 8167275 YP_003039692.1 CDS PAU_00855 NC_012962.1 960530 960640 D hypothetical protein 960530..960640 Photorhabdus asymbiotica 8165615 YP_003039693.1 CDS PAU_00856 NC_012962.1 961094 961411 D hypothetical protein 961094..961411 Photorhabdus asymbiotica 8167276 YP_003039694.1 CDS mltD NC_012962.1 961646 963010 R catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D complement(961646..963010) Photorhabdus asymbiotica 8167277 YP_003039695.1 CDS gloB NC_012962.1 963082 963834 R hydroxyacylglutathione hydrolase (glyoxalase ii) complement(963082..963834) Photorhabdus asymbiotica 8166335 YP_003039696.1 CDS yafS NC_012962.1 963878 964594 D hypothetical protein 963878..964594 Photorhabdus asymbiotica 8167759 YP_003039697.1 CDS rnhA NC_012962.1 964591 965106 R putative DNA replication ribonuclease HI complement(964591..965106) Photorhabdus asymbiotica 8166574 YP_003039698.1 CDS dnaQ NC_012962.1 965118 965864 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 965118..965864 Photorhabdus asymbiotica 8164881 YP_003039699.1 CDS PAU_00862 NC_012962.1 966182 966433 R sugar fermentation stimulation protein b (ner-like protein) complement(966182..966433) Photorhabdus asymbiotica 8169224 YP_003039700.1 CDS PAU_00863 NC_012962.1 966793 966996 R hypothetical protein complement(966793..966996) Photorhabdus asymbiotica 8167278 YP_003039701.1 CDS ISPlu8C2 NC_012962.1 967047 968114 D transposase, IS630 family 967047..968114 Photorhabdus asymbiotica 8167279 YP_003039702.1 CDS orf67 NC_012962.1 968421 969089 R hypothetical protein complement(968421..969089) Photorhabdus asymbiotica 8165041 YP_003039703.1 CDS orf66 NC_012962.1 969107 969790 R hypothetical protein complement(969107..969790) Photorhabdus asymbiotica 8165613 YP_003039704.1 CDS orf66 NC_012962.1 969874 970563 R hypothetical protein complement(969874..970563) Photorhabdus asymbiotica 8165611 YP_003039705.1 CDS tktA NC_012962.1 971187 973181 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 971187..973181 Photorhabdus asymbiotica 8165612 YP_003039706.1 CDS PAU_00869 NC_012962.1 974017 974967 D hypothetical protein 974017..974967 Photorhabdus asymbiotica 8167511 YP_003039707.1 CDS PAU_00870 NC_012962.1 974971 975288 D hypothetical protein 974971..975288 Photorhabdus asymbiotica 8167280 YP_003039708.1 CDS PAU_00871 NC_012962.1 975276 976091 D hypothetical protein 975276..976091 Photorhabdus asymbiotica 8167281 YP_003039709.1 CDS PAU_00872 NC_012962.1 976102 976833 D hypothetical protein 976102..976833 Photorhabdus asymbiotica 8167282 YP_003039710.1 CDS PAU_00873 NC_012962.1 976838 977434 D hypothetical protein 976838..977434 Photorhabdus asymbiotica 8167283 YP_003039711.1 CDS cydA1 NC_012962.1 977532 979082 D cytochrome d ubiquinol oxidase subunit 1 977532..979082 Photorhabdus asymbiotica 8167284 YP_003039712.1 CDS cydB1 NC_012962.1 979112 980251 D cytochrome d terminal oxidase polypeptide subunit II 979112..980251 Photorhabdus asymbiotica 8169118 YP_003039713.1 CDS PAU_00876 NC_012962.1 980633 980797 D is1-family insertion element protein 980633..980797 Photorhabdus asymbiotica 8169120 YP_003039714.1 CDS epd NC_012962.1 981367 982386 D NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 981367..982386 Photorhabdus asymbiotica 8167285 YP_003039715.1 CDS pgk NC_012962.1 982469 983632 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 982469..983632 Photorhabdus asymbiotica 8168680 YP_003039716.1 CDS fba NC_012962.1 983686 984762 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 983686..984762 Photorhabdus asymbiotica 8168711 YP_003039717.1 CDS tccC2 NC_012962.1 984925 987708 R insecticidal toxin complex protein tccc2 complement(984925..987708) Photorhabdus asymbiotica 8166508 YP_003039718.1 CDS basA/D NC_012962.1 988230 989879 D six-domain nonribosomal peptide synthetase 988230..989879 Photorhabdus asymbiotica 8167476 YP_003039719.1 CDS phbF NC_012962.1 989963 993094 D six-domain nonribosomal peptide synthetase 989963..993094 Photorhabdus asymbiotica 8165549 YP_003039720.1 CDS phbG NC_012962.1 993159 994502 R This domain is found in many multi-domain enzymes which synthesize peptide antibiotics.; putative photobactin biosynthesis protein phbg complement(993159..994502) Photorhabdus asymbiotica 8168720 YP_003039721.1 CDS PAU_00884 NC_012962.1 994634 994837 D hypothetical protein 994634..994837 Photorhabdus asymbiotica 8168721 YP_003039722.1 CDS PAU_00885 NC_012962.1 994955 995050 D hypothetical protein 994955..995050 Photorhabdus asymbiotica 8167286 YP_003039723.1 CDS phuB NC_012962.1 995214 996248 D with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein 995214..996248 Photorhabdus asymbiotica 8167287 YP_003039724.1 CDS phuG NC_012962.1 996272 997324 D cytoplasmic membrane permease 996272..997324 Photorhabdus asymbiotica 8168739 YP_003039725.1 CDS phuD NC_012962.1 997321 998385 D ferric enterobactin transport protein fepg 997321..998385 Photorhabdus asymbiotica 8168744 YP_003039726.1 CDS phuA NC_012962.1 999052 1001178 D putative photobactin outer membrane receptor phua 999052..1001178 Photorhabdus asymbiotica 8168742 YP_003039727.1 CDS phbH NC_012962.1 1001315 1004452 D six-domain nonribosomal peptide synthetase 1001315..1004452 Photorhabdus asymbiotica 8168738 YP_003039728.1 CDS phuC NC_012962.1 1004608 1005459 D ferric vibriobactin abc transporter, atp-binding protein 1004608..1005459 Photorhabdus asymbiotica 8168722 YP_003039729.1 CDS phbC NC_012962.1 1005737 1006918 D isochorismate synthase 1005737..1006918 Photorhabdus asymbiotica 8168741 YP_003039730.1 CDS entE NC_012962.1 1006915 1008558 D bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 1006915..1008558 Photorhabdus asymbiotica 8168718 YP_003039731.1 CDS phbB NC_012962.1 1008545 1009420 D isochorismatase 1008545..1009420 Photorhabdus asymbiotica 8168719 YP_003039732.1 CDS phbA NC_012962.1 1009422 1010180 D catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 1009422..1010180 Photorhabdus asymbiotica 8168717 YP_003039733.1 CDS tccC3 NC_012962.1 1010573 1011415 R insecticidal toxin complex protein tccc3 complement(1010573..1011415) Photorhabdus asymbiotica 8168716 YP_003039734.1 CDS tchA NC_012962.1 1011541 1011849 R hypothetical protein complement(1011541..1011849) Photorhabdus asymbiotica 8167477 YP_003039735.1 CDS tcaC NC_012962.1 1011902 1016308 R insecticidal toxin complex protein tcdb2 complement(1011902..1016308) Photorhabdus asymbiotica 8167482 YP_003039736.1 CDS tcdA2 NC_012962.1 1016366 1023559 R insecticidal toxin complex protein tcda2 complement(1016366..1023559) Photorhabdus asymbiotica 8167472 YP_003039737.1 CDS PAU_00900 NC_012962.1 1023946 1025274 R transposase insg for insertion sequence element is4 complement(1023946..1025274) Photorhabdus asymbiotica 8167481 YP_003039738.1 CDS tcdA NC_012962.1 1025396 1031926 R insecticidal toxin complex protein tcda5 complement(1025396..1031926) Photorhabdus asymbiotica 8167288 YP_003039739.1 CDS PAU_00902 NC_012962.1 1031975 1032169 D hypothetical protein 1031975..1032169 Photorhabdus asymbiotica 8167480 YP_003039740.1 CDS PAU_00903 NC_012962.1 1032564 1032761 R hypothetical protein complement(1032564..1032761) Photorhabdus asymbiotica 8167289 YP_003039741.1 CDS PAU_00904 NC_012962.1 1033326 1033463 D hypothetical protein 1033326..1033463 Photorhabdus asymbiotica 8167290 YP_003039742.1 CDS PAU_00905 NC_012962.1 1034185 1034385 R hypothetical protein complement(1034185..1034385) Photorhabdus asymbiotica 8167863 YP_003039743.1 CDS PAU_00906 NC_012962.1 1034375 1038508 R This highly divergent repeat occurs in number of proteins implicated in cell aggregation.; filamentous haemagglutinin family protein complement(1034375..1038508) Photorhabdus asymbiotica 8167865 YP_003039744.1 CDS PAU_00907 NC_012962.1 1038804 1038968 D hypothetical protein 1038804..1038968 Photorhabdus asymbiotica 8167866 YP_003039745.1 CDS yhiP NC_012962.1 1039175 1040644 R member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP complement(1039175..1040644) Photorhabdus asymbiotica 8167867 YP_003039746.1 CDS hpaC NC_012962.1 1040982 1041497 R 4-hydroxyphenylacetic acid hydroxylase putative coupling protein complement(1040982..1041497) Photorhabdus asymbiotica 8167612 YP_003039747.1 CDS hpaB NC_012962.1 1041518 1043080 R 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component (4-hpa 3 monooxygenase large component) (4-hpa 3-hydroxylase) complement(1041518..1043080) Photorhabdus asymbiotica 8167312 YP_003039748.1 CDS PAU_00911 NC_012962.1 1043680 1043952 R hypothetical protein complement(1043680..1043952) Photorhabdus asymbiotica 8167311 YP_003039749.1 CDS PAU_00912 NC_012962.1 1044016 1044327 D hypothetical protein 1044016..1044327 Photorhabdus asymbiotica 8167868 YP_003039750.1 CDS yfaA NC_012962.1 1044636 1048796 D beta-ketoacyl synthase 1044636..1048796 Photorhabdus asymbiotica 8167869 YP_003039751.1 CDS PAU_00914 NC_012962.1 <1048886 1051363 D omega-3 polyunsaturated fatty acid synthase pfaa <1048886..1051363 Photorhabdus asymbiotica 8165475 YP_003039752.1 CDS pfaC NC_012962.1 1051422 1055693 D polyunsaturated fatty acid synthase pfac; beta-ketoacyl synthase 1051422..1055693 Photorhabdus asymbiotica 8167870 YP_003039753.1 CDS PAU_00916 NC_012962.1 1055698 1058664 D hypothetical protein 1055698..1058664 Photorhabdus asymbiotica 8168704 YP_003039754.1 CDS orf28 NC_012962.1 1059166 1059489 R hypothetical protein complement(1059166..1059489) Photorhabdus asymbiotica 8167871 YP_003039755.1 CDS orf25 NC_012962.1 1059890 1060201 R hypothetical protein complement(1059890..1060201) Photorhabdus asymbiotica 8165595 YP_003039756.1 CDS orf24 NC_012962.1 1060219 1061088 R hypothetical protein complement(1060219..1061088) Photorhabdus asymbiotica 8165593 YP_003039757.1 CDS PAU_00920 NC_012962.1 1061090 1061569 R hypothetical protein complement(1061090..1061569) Photorhabdus asymbiotica 8165592 YP_003039758.1 CDS PAU_00921 NC_012962.1 1062249 1062416 R hypothetical protein complement(1062249..1062416) Photorhabdus asymbiotica 8167872 YP_003039759.1 CDS PAU_00922 NC_012962.1 1063204 1063683 D hypothetical protein 1063204..1063683 Photorhabdus asymbiotica 8167873 YP_003039760.1 CDS hpaA NC_012962.1 1064086 1064976 R regulator of the 4hpa-hydroxylase operon complement(1064086..1064976) Photorhabdus asymbiotica 8167874 YP_003039761.1 CDS hpaX NC_012962.1 1065002 1066378 R hypothetical 4-hydroxyphenylacetate permease (hpax) complement(1065002..1066378) Photorhabdus asymbiotica 8167309 YP_003039762.1 CDS hpaI NC_012962.1 1066476 1067282 R 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase complement(1066476..1067282) Photorhabdus asymbiotica 8167320 YP_003039763.1 CDS hpaH NC_012962.1 1067294 1068097 R 2-oxo-hept-3-ene-1,7-dioate hydratase (2-oxo-hept-4-ene-1,7-dioat hydratase) complement(1067294..1068097) Photorhabdus asymbiotica 8167319 YP_003039764.1 CDS gabD NC_012962.1 1068102 1069577 R succinate-semialdehyde dehydrogenase, nadp-dependent activit (succinate-semialdehyde dehydrogenase) complement(1068102..1069577) Photorhabdus asymbiotica 8167318 YP_003039765.1 CDS bcr NC_012962.1 1069574 1070797 R Multidrug resistance proteins are molecular pumps that participate in a low energy shock adaptive response in some bacteria. They mediate cellular resistance to toxicants such as cycloheximide (CYH), 4-nitroquinoline N-oxide (4-NQO), cadmium, and hydrogen peroxide in yeast.; bicyclomycin resistance protein; transmembrane protein complement(1069574..1070797) Photorhabdus asymbiotica 8168182 YP_003039766.1 CDS hpaF NC_012962.1 1070800 1071186 R 5-carboxymethyl-2-hydroxymuconate isomerase complement(1070800..1071186) Photorhabdus asymbiotica 8165552 YP_003039767.1 CDS hpaD NC_012962.1 1071200 1072078 R homoprotocatechuate dyoxygenase complement(1071200..1072078) Photorhabdus asymbiotica 8167315 YP_003039768.1 CDS hpaE NC_012962.1 1072143 1073609 R 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase complement(1072143..1073609) Photorhabdus asymbiotica 8167313 YP_003039769.1 CDS hpaG2 NC_012962.1 1073606 1074370 R 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase complement(1073606..1074370) Photorhabdus asymbiotica 8167314 YP_003039770.1 CDS hpaG1 NC_012962.1 1074367 1074999 R homoprotocatechuate catabolism bifunctional isomerase/decarboxylase complement(1074367..1074999) Photorhabdus asymbiotica 8167317 YP_003039771.1 CDS PAU_00934 NC_012962.1 1075051 1075218 D hypothetical protein 1075051..1075218 Photorhabdus asymbiotica 8167316 YP_003039772.1 CDS PAU_00935 NC_012962.1 1075234 1075389 R hypothetical protein complement(1075234..1075389) Photorhabdus asymbiotica 8167875 YP_003039773.1 CDS hpcR NC_012962.1 1075513 1075950 D homoprotocatechuate degradative operon repressor 1075513..1075950 Photorhabdus asymbiotica 8167876 YP_003039774.1 CDS PAU_00937 NC_012962.1 1076183 1076482 R hypothetical protein complement(1076183..1076482) Photorhabdus asymbiotica 8167321 YP_003039775.1 CDS PAU_00938 NC_012962.1 1076490 1076729 R hypothetical protein complement(1076490..1076729) Photorhabdus asymbiotica 8167877 YP_003039776.1 CDS gene0006 NC_012962.1 1077516 1077863 R hypothetical protein complement(1077516..1077863) Photorhabdus asymbiotica 8167878 YP_003039777.1 CDS xerC NC_012962.1 1077908 1078930 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(1077908..1078930) Photorhabdus asymbiotica 8169331 YP_003039778.1 CDS gene0008 NC_012962.1 1079149 1081848 R putative DNA primase-like protein complement(1079149..1081848) Photorhabdus asymbiotica 8169332 YP_003039779.1 CDS gene0009 NC_012962.1 1081962 1082354 D putative phage regulatory protein 1081962..1082354 Photorhabdus asymbiotica 8169333 YP_003039780.1 CDS gene0010 NC_012962.1 1082431 1082754 D putative endoribonuclease SymE 1082431..1082754 Photorhabdus asymbiotica 8169334 YP_003039781.1 CDS gene0011 NC_012962.1 1082768 1082965 D hypothetical protein 1082768..1082965 Photorhabdus asymbiotica 8169335 YP_003039782.1 CDS PAU_00945 NC_012962.1 1083012 1083359 R hypothetical protein complement(1083012..1083359) Photorhabdus asymbiotica 8169336 YP_003039783.1 CDS PAU_00946 NC_012962.1 1083364 1083645 R hypothetical protein complement(1083364..1083645) Photorhabdus asymbiotica 8167879 YP_003039784.1 CDS PAU_00947 NC_012962.1 1083913 1084239 D hypothetical protein 1083913..1084239 Photorhabdus asymbiotica 8167880 YP_003039785.1 CDS gene0012 NC_012962.1 1084715 1086133 R putative integrase/recombinase complement(1084715..1086133) Photorhabdus asymbiotica 8167881 YP_003039786.1 CDS gene0013 NC_012962.1 1086594 1089362 R putative DNA primase-like protein complement(1086594..1089362) Photorhabdus asymbiotica 8169337 YP_003039787.1 CDS gene0014 NC_012962.1 1089465 1089866 D putative phage regulator 1089465..1089866 Photorhabdus asymbiotica 8169338 YP_003039788.1 CDS gene0015 NC_012962.1 1089939 1090262 D putative endoribonuclease SymE2 1089939..1090262 Photorhabdus asymbiotica 8169339 YP_003039789.1 CDS gene0016 NC_012962.1 1090524 1091066 R hypothetical protein complement(1090524..1091066) Photorhabdus asymbiotica 8169340 YP_003039790.1 CDS PAU_00953 NC_012962.1 1091080 1091352 R hypothetical protein complement(1091080..1091352) Photorhabdus asymbiotica 8169341 YP_003039791.1 CDS gene0017 NC_012962.1 1092488 1093906 R putative integrase/recombinase complement(1092488..1093906) Photorhabdus asymbiotica 8167882 YP_003039792.1 CDS gene0018 NC_012962.1 1094367 1097135 R putative DNA primase-like protein complement(1094367..1097135) Photorhabdus asymbiotica 8169342 YP_003039793.1 CDS gene0019 NC_012962.1 1097238 1097639 D putative phage regulator 1097238..1097639 Photorhabdus asymbiotica 8169343 YP_003039794.1 CDS gene0020 NC_012962.1 1097712 1098035 D putative endoribonuclease SymE3 1097712..1098035 Photorhabdus asymbiotica 8169344 YP_003039795.1 CDS gene0021 NC_012962.1 1098297 1098839 R hypothetical protein complement(1098297..1098839) Photorhabdus asymbiotica 8169345 YP_003039796.1 CDS gene0022 NC_012962.1 1098853 1099125 R Putative phage cell wall peptidase complement(1098853..1099125) Photorhabdus asymbiotica 8169346 YP_003039797.1 CDS gene0023 NC_012962.1 1099425 1099811 R hypothetical protein complement(1099425..1099811) Photorhabdus asymbiotica 8169347 YP_003039798.1 CDS gene0024 NC_012962.1 1099805 1100152 R hypothetical protein complement(1099805..1100152) Photorhabdus asymbiotica 8169348 YP_003039799.1 CDS xerC NC_012962.1 1100197 1101219 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(1100197..1101219) Photorhabdus asymbiotica 8169349 YP_003039800.1 CDS gene0026 NC_012962.1 1101438 1104137 R dnag primase-like protein complement(1101438..1104137) Photorhabdus asymbiotica 8169350 YP_003039801.1 CDS gene0027 NC_012962.1 1104251 1104643 D hypothetical protein 1104251..1104643 Photorhabdus asymbiotica 8169351 YP_003039802.1 CDS gene0028 NC_012962.1 1104720 1105043 D putative endoribonuclease SymE4 1104720..1105043 Photorhabdus asymbiotica 8169352 YP_003039803.1 CDS gene0029 NC_012962.1 1105301 1105648 R hypothetical protein complement(1105301..1105648) Photorhabdus asymbiotica 8169353 YP_003039804.1 CDS rhs-core NC_012962.1 1105653 1110008 R hypothetical protein complement(1105653..1110008) Photorhabdus asymbiotica 8169354 YP_003039805.1 CDS PAU_00968 NC_012962.1 1110026 1110445 R hypothetical protein complement(1110026..1110445) Photorhabdus asymbiotica 8165177 YP_003039806.1 CDS vgrG NC_012962.1 1110500 1112395 R hypothetical protein complement(1110500..1112395) Photorhabdus asymbiotica 8167883 YP_003039807.1 CDS ngrA NC_012962.1 1113140 1113883 R phosphopantetheinyl transferase; 4'-phosphopantetheinyl tranferase complement(1113140..1113883) Photorhabdus asymbiotica 8168445 YP_003039808.1 CDS phfB NC_012962.1 1113930 1114958 R putative major fimbrial subunit complement(1113930..1114958) Photorhabdus asymbiotica 8166918 YP_003039809.1 CDS yraJ NC_012962.1 1114987 1117467 R putative outer membrane protein complement(1114987..1117467) Photorhabdus asymbiotica 8168726 YP_003039810.1 CDS yraI NC_012962.1 1117491 1118159 R The PapD-like superfamily of periplasmic chaperones directs the assembly of over 30 diverse adhesive surface organelles that mediate the attachment of many different pathogenic bacteria to host tissues, a critical early step in the development of disease. PapD, the prototypical chaperone, is necessary for the assembly of P pili.; uncharacterized fimbrial chaperone yrai precursor complement(1117491..1118159) Photorhabdus asymbiotica 8169174 YP_003039811.1 CDS phfS NC_012962.1 1118198 1118725 R phfs protein; major fimbrial subunit precursor complement(1118198..1118725) Photorhabdus asymbiotica 8169172 YP_003039812.1 CDS pltP NC_012962.1 1120951 1121562 D putative transmembrane protein 1120951..1121562 Photorhabdus asymbiotica 8168727 YP_003039813.1 CDS PAU_00976 NC_012962.1 1121593 1121697 D hypothetical protein 1121593..1121697 Photorhabdus asymbiotica 8168281 YP_003039814.1 CDS ybaL NC_012962.1 1121768 1123471 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; putative cation:proton antiport protein complement(1121768..1123471) Photorhabdus asymbiotica 8167884 YP_003039815.1 CDS fsr NC_012962.1 1123713 1124930 R fosmidomycin resistance protein complement(1123713..1124930) Photorhabdus asymbiotica 8166576 YP_003039816.1 CDS ushA NC_012962.1 1125176 1126834 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 1125176..1126834 Photorhabdus asymbiotica 8168159 YP_003039817.1 CDS ybbP NC_012962.1 1126972 1129404 R probable abc transporter permease protein ybbp complement(1126972..1129404) Photorhabdus asymbiotica 8168422 YP_003039818.1 CDS ybbA NC_012962.1 1129401 1130087 R putative ABC transporter ATP-binding protein YbbA complement(1129401..1130087) Photorhabdus asymbiotica 8166583 YP_003039819.1 CDS tesA NC_012962.1 1130055 1130690 D multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 1130055..1130690 Photorhabdus asymbiotica 8166578 YP_003039820.1 CDS ybbO NC_012962.1 1130741 1131526 D short chain dehydrogenase 1130741..1131526 Photorhabdus asymbiotica 8167491 YP_003039821.1 CDS ybbN NC_012962.1 1131593 1132450 D hypothetical protein 1131593..1132450 Photorhabdus asymbiotica 8166582 YP_003039822.1 CDS ybbK NC_012962.1 1132473 1133393 D hypothetical protein 1132473..1133393 Photorhabdus asymbiotica 8166581 YP_003039823.1 CDS ybbJ NC_012962.1 1133396 1133851 D inner membrane protein ybbj 1133396..1133851 Photorhabdus asymbiotica 8166580 YP_003039824.1 CDS cueR NC_012962.1 1133845 1134246 R putative transcriptional regulator complement(1133845..1134246) Photorhabdus asymbiotica 8166579 YP_003039825.1 CDS copA NC_012962.1 1134389 1137124 D copper exporting ATPase 1134389..1137124 Photorhabdus asymbiotica 8169109 YP_003039826.1 CDS PAU_00989 NC_012962.1 1137312 1137500 R hypothetical protein complement(1137312..1137500) Photorhabdus asymbiotica 8168599 YP_003039827.1 CDS ybaP NC_012962.1 1137686 1138498 D hypothetical protein 1137686..1138498 Photorhabdus asymbiotica 8167885 YP_003039828.1 CDS PAU_00991 NC_012962.1 1138812 1139867 R Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor; luciferase complement(1138812..1139867) Photorhabdus asymbiotica 8166577 YP_003039829.1 CDS PAU_00992 NC_012962.1 1139950 1141224 R hypothetical protein complement(1139950..1141224) Photorhabdus asymbiotica 8167886 YP_003039830.1 CDS PAU_00993 NC_012962.1 1141281 1142186 R hypothetical protein complement(1141281..1142186) Photorhabdus asymbiotica 8167887 YP_003039831.1 CDS PAU_00994 NC_012962.1 1142661 1143281 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1142661..1143281 Photorhabdus asymbiotica 8167888 YP_003039832.1 CDS PAU_00995 NC_012962.1 1143731 1143889 R hypothetical protein complement(1143731..1143889) Photorhabdus asymbiotica 8167889 YP_003039833.1 CDS purK NC_012962.1 1144161 1145228 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1144161..1145228) Photorhabdus asymbiotica 8167890 YP_003039834.1 CDS purE NC_012962.1 1145225 1145755 R phosphoribosylaminoimidazole carboxylase catalytic subunit (ai carboxylase) (airc) complement(1145225..1145755) Photorhabdus asymbiotica 8165103 YP_003039835.1 CDS lpxH NC_012962.1 1145890 1146612 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(1145890..1146612) Photorhabdus asymbiotica 8168997 YP_003039836.1 CDS ppiB NC_012962.1 1146623 1147117 R peptidyl-prolyl cis-trans isomerase B (rotamase B) complement(1146623..1147117) Photorhabdus asymbiotica 8168922 YP_003039837.1 CDS cysS NC_012962.1 1147387 1148772 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1147387..1148772 Photorhabdus asymbiotica 8168298 YP_003039838.1 CDS PAU_01001 NC_012962.1 1148832 1149044 R hypothetical protein complement(1148832..1149044) Photorhabdus asymbiotica 8169143 YP_003039839.1 CDS folD NC_012962.1 1149044 1149919 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1149044..1149919) Photorhabdus asymbiotica 8167891 YP_003039840.1 CDS PAU_01003 NC_012962.1 1150358 1151572 D putative phage integrase 1150358..1151572 Photorhabdus asymbiotica 8169225 YP_003039841.1 CDS PAU_01004 NC_012962.1 1151787 1151996 R putative phage transcriptional regulator complement(1151787..1151996) Photorhabdus asymbiotica 8167892 YP_003039842.1 CDS yabA NC_012962.1 1152458 1154377 R regulatory prophage protein complement(1152458..1154377) Photorhabdus asymbiotica 8167893 YP_003039843.1 CDS PAU_01006 NC_012962.1 1154469 1155101 R putative prophage protein complement(1154469..1155101) Photorhabdus asymbiotica 8168512 YP_003039844.1 CDS alpA1 NC_012962.1 1155098 1155298 R predicted phage transcriptional regulator complement(1155098..1155298) Photorhabdus asymbiotica 8167894 YP_003039845.1 CDS PAU_01008 NC_012962.1 1155302 1156180 R dna-binding prophage protein complement(1155302..1156180) Photorhabdus asymbiotica 8166772 YP_003039846.1 CDS PAU_01009 NC_012962.1 1157717 1158940 D putative phage integrase 1157717..1158940 Photorhabdus asymbiotica 8167895 YP_003039847.1 CDS PAU_01010 NC_012962.1 1159411 1159695 R hypothetical protein complement(1159411..1159695) Photorhabdus asymbiotica 8167896 YP_003039848.1 CDS PAU_01011 NC_012962.1 1160266 1160646 D hypothetical protein 1160266..1160646 Photorhabdus asymbiotica 8167897 YP_003039849.1 CDS PAU_01012 NC_012962.1 1160643 1162037 D hypothetical protein 1160643..1162037 Photorhabdus asymbiotica 8167898 YP_003039850.1 CDS PAU_01013 NC_012962.1 1162039 1163142 D hypothetical protein 1162039..1163142 Photorhabdus asymbiotica 8167899 YP_003039851.1 CDS PAU_01014 NC_012962.1 1163139 1163762 D hypothetical protein 1163139..1163762 Photorhabdus asymbiotica 8167900 YP_003039852.1 CDS PAU_01015 NC_012962.1 1163785 1165395 D hypothetical protein 1163785..1165395 Photorhabdus asymbiotica 8167901 YP_003039853.1 CDS Sc/SvQ NC_012962.1 1166339 1167088 D lambdoid prophage tail fiber protein 1166339..1167088 Photorhabdus asymbiotica 8167902 YP_003039854.1 CDS Sc/SvP NC_012962.1 1167480 1168346 D pahage sc/svp protein 1167480..1168346 Photorhabdus asymbiotica 8167182 YP_003039855.1 CDS PAU_01018 NC_012962.1 1168726 1170303 R putative phage protein gph complement(1168726..1170303) Photorhabdus asymbiotica 8167181 YP_003039856.1 CDS atoA NC_012962.1 1171595 1172245 R acetate coa-transferase beta subunit (acetyl-coa:acetoacetate co transferase beta subunit) complement(1171595..1172245) Photorhabdus asymbiotica 8167903 YP_003039857.1 CDS atoD NC_012962.1 1172252 1172905 R acetyl-CoA:acetoacetyl-CoA transferase subunit alpha complement(1172252..1172905) Photorhabdus asymbiotica 8165529 YP_003039858.1 CDS atoC NC_012962.1 1173206 1174231 R acetoacetate metabolism regulatory protein atoc complement(1173206..1174231) Photorhabdus asymbiotica 8165531 YP_003039859.1 CDS PAU_01022 NC_012962.1 1174453 1175481 R hypothetical protein complement(1174453..1175481) Photorhabdus asymbiotica 8165530 YP_003039860.1 CDS PAU_01023 NC_012962.1 1176727 1177188 D hypothetical protein 1176727..1177188 Photorhabdus asymbiotica 8167904 YP_003039861.1 CDS PAU_01024 NC_012962.1 1177773 1178780 R hypothetical protein complement(1177773..1178780) Photorhabdus asymbiotica 8167905 YP_003039862.1 CDS PAU_01025 NC_012962.1 1178826 1178942 R hypothetical protein complement(1178826..1178942) Photorhabdus asymbiotica 8167906 YP_003039863.1 CDS msc_3 NC_012962.1 1179028 1179174 D hypothetical protein 1179028..1179174 Photorhabdus asymbiotica 8167907 YP_003039864.1 CDS PAU_01027 NC_012962.1 1179642 1179944 D hypothetical protein 1179642..1179944 Photorhabdus asymbiotica 8166385 YP_003039865.1 CDS cspI NC_012962.1 1180375 1180590 D 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature; cold shock-like protein (cps-i) 1180375..1180590 Photorhabdus asymbiotica 8167908 YP_003039866.1 CDS sctL NC_012962.1 1180824 1181441 R type III secretion system protein complement(1180824..1181441) Photorhabdus asymbiotica 8169106 YP_003039867.1 CDS sctK NC_012962.1 1181420 1182046 R type iii secretion component protein sctk complement(1181420..1182046) Photorhabdus asymbiotica 8167199 YP_003039868.1 CDS sctJ NC_012962.1 1182046 1182783 R type iii secretion component protein sctj complement(1182046..1182783) Photorhabdus asymbiotica 8167198 YP_003039869.1 CDS sctI NC_012962.1 1182790 1183128 R type iii secretion component protein scti complement(1182790..1183128) Photorhabdus asymbiotica 8167197 YP_003039870.1 CDS sctH NC_012962.1 1183128 1183694 R type iii secretion component protein scth complement(1183128..1183694) Photorhabdus asymbiotica 8167196 YP_003039871.1 CDS sctG NC_012962.1 1183687 1184040 R type iii secretion component protein sctg complement(1183687..1184040) Photorhabdus asymbiotica 8167195 YP_003039872.1 CDS sctF NC_012962.1 1184043 1184366 R type iii secretion component protein sctf complement(1184043..1184366) Photorhabdus asymbiotica 8167194 YP_003039873.1 CDS sctD NC_012962.1 1184517 1185791 R type iii secretion component protein sctd complement(1184517..1185791) Photorhabdus asymbiotica 8167193 YP_003039874.1 CDS sctC NC_012962.1 1185788 1187644 R type iii secretion outer membrane protein pscc complement(1185788..1187644) Photorhabdus asymbiotica 8167192 YP_003039875.1 CDS sctB NC_012962.1 1187632 1188054 R type iii secretion component protein sctb complement(1187632..1188054) Photorhabdus asymbiotica 8167190 YP_003039876.1 CDS PAU_01039 NC_012962.1 1188070 1188906 R hypothetical protein complement(1188070..1188906) Photorhabdus asymbiotica 8167189 YP_003039877.1 CDS rhaS NC_012962.1 1189021 1189839 R transcriptional activator proteinExsA/virf complement(1189021..1189839) Photorhabdus asymbiotica 8167909 YP_003039878.1 CDS PAU_01041 NC_012962.1 1190568 1190660 R hypothetical protein complement(1190568..1190660) Photorhabdus asymbiotica 8165172 YP_003039879.1 CDS spcU NC_012962.1 1190703 1191101 R hypothetical protein complement(1190703..1191101) Photorhabdus asymbiotica 8167910 YP_003039880.1 CDS exoU NC_012962.1 1191111 1193141 R type three secretion system effector protein complement(1191111..1193141) Photorhabdus asymbiotica 8167665 YP_003039881.1 CDS PAU_01044 NC_012962.1 1193237 1193374 R hypothetical protein complement(1193237..1193374) Photorhabdus asymbiotica 8166486 YP_003039882.1 CDS sctU NC_012962.1 1193517 1194569 R type iii secretion component protein sctu complement(1193517..1194569) Photorhabdus asymbiotica 8167911 YP_003039883.1 CDS sctT NC_012962.1 1194566 1195354 R type iii secretion component protein sctt complement(1194566..1195354) Photorhabdus asymbiotica 8167207 YP_003039884.1 CDS sctS NC_012962.1 1195351 1195617 R type iii secretion component protein scts complement(1195351..1195617) Photorhabdus asymbiotica 8167206 YP_003039885.1 CDS sctR NC_012962.1 1195620 1196273 R part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein complement(1195620..1196273) Photorhabdus asymbiotica 8167205 YP_003039886.1 CDS sctQ NC_012962.1 1196270 1197199 R type III secretion system protein complement(1196270..1197199) Photorhabdus asymbiotica 8167204 YP_003039887.1 CDS sctP NC_012962.1 1197196 1198524 R type iii secretion component protein sctp complement(1197196..1198524) Photorhabdus asymbiotica 8167203 YP_003039888.1 CDS sctO NC_012962.1 1198534 1198995 R type iii secretion component protein scto complement(1198534..1198995) Photorhabdus asymbiotica 8167202 YP_003039889.1 CDS sctN NC_012962.1 1198992 1200317 R type III secretion system ATPase complement(1198992..1200317) Photorhabdus asymbiotica 8167201 YP_003039890.1 CDS sctW NC_012962.1 1200542 1201681 D type iii secretion control protein sctw 1200542..1201681 Photorhabdus asymbiotica 8167200 YP_003039891.1 CDS lssN NC_012962.1 1201678 1202049 D putative type iii secretion protein 1201678..1202049 Photorhabdus asymbiotica 8165820 YP_003039892.1 CDS sctX NC_012962.1 1202046 1202411 D type iii secretion protein sctx 1202046..1202411 Photorhabdus asymbiotica 8168933 YP_003039893.1 CDS sctY NC_012962.1 1202414 1202743 D type iii secretion protein scty 1202414..1202743 Photorhabdus asymbiotica 8167617 YP_003039894.1 CDS lssD NC_012962.1 1202740 1204863 D type iii secretory apparatus protein pcrd 1202740..1204863 Photorhabdus asymbiotica 8167618 YP_003039895.1 CDS pcrR NC_012962.1 1204860 1205288 D transcription regulator 1204860..1205288 Photorhabdus asymbiotica 8168931 YP_003039896.1 CDS lssG NC_012962.1 1205335 1205613 D regulator in type iii secretion lssg 1205335..1205613 Photorhabdus asymbiotica 8165652 YP_003039897.1 CDS lssV NC_012962.1 1205624 1206580 D virulence-associated v antigen (low calcium response locus protein v) 1205624..1206580 Photorhabdus asymbiotica 8168932 YP_003039898.1 CDS sycD NC_012962.1 1206590 1207099 D The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the type III system do not possess a secretion signal, and are considered unique because of this. Yersinia spp. secrete effector proteins called YopB and YopD that facilitate the spread of other translocated proteins through the type III needle and the host cell cytoplasm . Both are believed to act as pore translocases, forming apertures in the host cell membrane and allowing the bacterium easy access to its cytoplasm.; yopb/d chaperone sycd 1206590..1207099 Photorhabdus asymbiotica 8168934 YP_003039899.1 CDS PAU_01062 NC_012962.1 1207080 1208258 D hypothetical protein 1207080..1208258 Photorhabdus asymbiotica 8167456 YP_003039900.1 CDS PAU_01063 NC_012962.1 1208271 1209164 D hypothetical protein 1208271..1209164 Photorhabdus asymbiotica 8167912 YP_003039901.1 CDS PAU_01064 NC_012962.1 1209325 1209576 R hypothetical protein complement(1209325..1209576) Photorhabdus asymbiotica 8167913 YP_003039902.1 CDS exsC NC_012962.1 1209550 1209993 D In many Gram-negative bacteria, a key indicator of pathogenic potential is the possession of a specialised type III secretion system, which is utilised to deliver virulence effector proteins directly into the host cell cytosol. Many of the proteins secreted from such systems require small cytosolic chaperones to maintain the secreted substrates in a secretion-competent state.; exoenzyme s synthesis protein C 1209550..1209993 Photorhabdus asymbiotica 8167914 YP_003039903.1 CDS exsE NC_012962.1 1209990 1210223 D hypothetical protein 1209990..1210223 Photorhabdus asymbiotica 8166487 YP_003039904.1 CDS lscW NC_012962.1 1210220 1210612 D lipoprotein virg (yscw) (virg) 1210220..1210612 Photorhabdus asymbiotica 8166488 YP_003039905.1 CDS hod NC_012962.1 1211530 1212219 D hypothetical protein 1211530..1212219 Photorhabdus asymbiotica 8168927 YP_003039906.1 CDS orf35 NC_012962.1 1212733 1213059 D Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall.; phage holin 1212733..1213059 Photorhabdus asymbiotica 8167300 YP_003039907.1 CDS orf36 NC_012962.1 1213069 1213470 D hypothetical protein 1213069..1213470 Photorhabdus asymbiotica 8165597 YP_003039908.1 CDS Rz NC_012962.1 1213480 1213929 D Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. Both of these genes are required for host cell lysis if the outer membrane is stabilized by millimolar concentrations of divalent cations, but are otherwise uneccessary. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane.; lamdoid prophage endopeptidase gp15 1213480..1213929 Photorhabdus asymbiotica 8165598 YP_003039909.1 CDS PAU_01072 NC_012962.1 1214017 1214412 R hypothetical protein complement(1214017..1214412) Photorhabdus asymbiotica 8167167 YP_003039910.1 CDS wza NC_012962.1 1215115 1216260 D putative polysaccharide export protein YccZ 1215115..1216260 Photorhabdus asymbiotica 8167915 YP_003039911.1 CDS wzb NC_012962.1 1216260 1216688 D hypothetical protein 1216260..1216688 Photorhabdus asymbiotica 8168495 YP_003039912.1 CDS wzc NC_012962.1 1216755 1218896 D tyrosine-protein kinase wzc 1216755..1218896 Photorhabdus asymbiotica 8168496 YP_003039913.1 CDS tehB NC_012962.1 1219133 1219990 D with TehA confers resistance to tellurite; tellurite resistance protein TehB 1219133..1219990 Photorhabdus asymbiotica 8168497 YP_003039914.1 CDS PAU_01077 NC_012962.1 1220123 1221715 R hypothetical protein complement(1220123..1221715) Photorhabdus asymbiotica 8167490 YP_003039915.1 CDS PAU_01078 NC_012962.1 1222281 1223684 D sodium:alanine symporter-like protein 1222281..1223684 Photorhabdus asymbiotica 8167916 YP_003039916.1 CDS PAU_01079 NC_012962.1 1223750 1224256 D is putative transposase 1223750..1224256 Photorhabdus asymbiotica 8167917 YP_003039917.1 CDS PAU_01080 NC_012962.1 1224325 1225098 D putative transposase for insertion sequence element is150 1224325..1225098 Photorhabdus asymbiotica 8167918 YP_003039918.1 CDS aldB NC_012962.1 1225167 1226651 R aldehyde dehydrogenase b (lactaldehyde dehydrogenase) complement(1225167..1226651) Photorhabdus asymbiotica 8167919 YP_003039919.1 CDS PAU_01082 NC_012962.1 1226969 1228105 R abc-type iron(iii) transport system, periplasmic binding protein precursor complement(1226969..1228105) Photorhabdus asymbiotica 8166770 YP_003039920.1 CDS hcr NC_012962.1 <1228717 1228938 D NADH oxidoreductase <1228717..1228938 Photorhabdus asymbiotica 8167920 YP_003039921.1 CDS PAU_01084 NC_012962.1 1229182 1229514 D hypothetical protein 1229182..1229514 Photorhabdus asymbiotica 8169284 YP_003039922.1 CDS PAU_01085 NC_012962.1 1229915 1230988 D magnesium transport protein MgtE 1229915..1230988 Photorhabdus asymbiotica 8169226 YP_003039923.1 CDS sprT NC_012962.1 1231735 1232232 R hypothetical protein complement(1231735..1232232) Photorhabdus asymbiotica 8167922 YP_003039924.1 CDS metK NC_012962.1 1232387 1233559 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1232387..1233559) Photorhabdus asymbiotica 8167676 YP_003039925.1 CDS speA NC_012962.1 1234190 1236094 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1234190..1236094 Photorhabdus asymbiotica 8168198 YP_003039926.1 CDS speB NC_012962.1 1236266 1237192 D catalyzes the formation of putrescine from agmatine; agmatinase 1236266..1237192 Photorhabdus asymbiotica 8167666 YP_003039927.1 CDS api10 NC_012962.1 1237470 1237568 R hypothetical protein complement(1237470..1237568) Photorhabdus asymbiotica 8167667 YP_003039928.1 CDS PAU_01091 NC_012962.1 1237799 1238518 R This family contains a number of integral membrane proteins including the TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions.; putative integral membrane transport protein complement(1237799..1238518) Photorhabdus asymbiotica 8166788 YP_003039929.1 CDS mutH NC_012962.1 1238612 1239298 R MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein complement(1238612..1239298) Photorhabdus asymbiotica 8167923 YP_003039930.1 CDS sgrR NC_012962.1 1239882 1241543 R activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR complement(1239882..1241543) Photorhabdus asymbiotica 8166887 YP_003039931.1 CDS leuD NC_012962.1 1242082 1242684 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(1242082..1242684) Photorhabdus asymbiotica 8167645 YP_003039932.1 CDS leuC NC_012962.1 1242697 1244106 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(1242697..1244106) Photorhabdus asymbiotica 8165076 YP_003039933.1 CDS leuB NC_012962.1 1244108 1245199 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(1244108..1245199) Photorhabdus asymbiotica 8165075 YP_003039934.1 CDS leuA NC_012962.1 1245202 1246764 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(1245202..1246764) Photorhabdus asymbiotica 8165074 YP_003039935.1 CDS leuO NC_012962.1 1247721 1248665 D activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 1247721..1248665 Photorhabdus asymbiotica 8165073 YP_003039936.1 CDS fadD NC_012962.1 1248900 1250702 D long-chain-fatty-acid--CoA ligase 1248900..1250702 Photorhabdus asymbiotica 8165077 YP_003039937.1 CDS PAU_01100 NC_012962.1 1251329 1251895 D hypothetical protein 1251329..1251895 Photorhabdus asymbiotica 8166501 YP_003039938.1 CDS ilvI NC_012962.1 1252250 1253977 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 1252250..1253977 Photorhabdus asymbiotica 8167924 YP_003039939.1 CDS ilvH NC_012962.1 1253980 1254471 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1253980..1254471 Photorhabdus asymbiotica 8167363 YP_003039940.1 CDS fruR NC_012962.1 1254558 1255565 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 1254558..1255565 Photorhabdus asymbiotica 8167362 YP_003039941.1 CDS mraZ NC_012962.1 1256150 1256608 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1256150..1256608 Photorhabdus asymbiotica 8168158 YP_003039942.1 CDS mraW NC_012962.1 1256611 1257555 D S-adenosyl-methyltransferase MraW 1256611..1257555 Photorhabdus asymbiotica 8166361 YP_003039943.1 CDS ftsL NC_012962.1 1257555 1257872 D membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 1257555..1257872 Photorhabdus asymbiotica 8166359 YP_003039944.1 CDS ftsI NC_012962.1 1257902 1259668 D The large number of penicillin binding proteins, which are represented in this group of sequences, are responsible for the final stages of peptidoglycan biosynthesis for cell wall formation.; peptidoglycan synthetase ftsi (penicillin-binding protein 3) (pbp-3) 1257902..1259668 Photorhabdus asymbiotica 8168166 YP_003039945.1 CDS murE NC_012962.1 1259655 1261142 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1259655..1261142 Photorhabdus asymbiotica 8168164 YP_003039946.1 CDS murF NC_012962.1 1261139 1262518 D Peptidoglycan biosynthesis; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 1261139..1262518 Photorhabdus asymbiotica 8164856 YP_003039947.1 CDS mraY NC_012962.1 1262512 1263594 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1262512..1263594 Photorhabdus asymbiotica 8166884 YP_003039948.1 CDS murD NC_012962.1 1263636 1264907 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1263636..1264907 Photorhabdus asymbiotica 8166360 YP_003039949.1 CDS ftsW NC_012962.1 1264907 1266100 D integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 1264907..1266100 Photorhabdus asymbiotica 8164855 YP_003039950.1 CDS murG NC_012962.1 1266097 1267167 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1266097..1267167 Photorhabdus asymbiotica 8168169 YP_003039951.1 CDS murC NC_012962.1 <1267220 1268698 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase <1267220..1268698 Photorhabdus asymbiotica 8166885 YP_003039952.1 CDS ddl NC_012962.1 1268691 1269611 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1268691..1269611 Photorhabdus asymbiotica 8164854 YP_003039953.1 CDS ftsQ NC_012962.1 1269613 1270416 D involved in septum formation; cell division protein FtsQ 1269613..1270416 Photorhabdus asymbiotica 8168603 YP_003039954.1 CDS ftsA NC_012962.1 1270459 1271715 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 1270459..1271715 Photorhabdus asymbiotica 8168168 YP_003039955.1 CDS ftsZ NC_012962.1 1271779 1272939 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1271779..1272939 Photorhabdus asymbiotica 8168161 YP_003039956.1 CDS lpxC NC_012962.1 1273038 1273955 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1273038..1273955 Photorhabdus asymbiotica 8168172 YP_003039957.1 CDS PAU_01120 NC_012962.1 1274036 1274560 R hypothetical protein complement(1274036..1274560) Photorhabdus asymbiotica 8168920 YP_003039958.1 CDS secM NC_012962.1 1274593 1275123 D secM translational pause allows for the initiation of secA translation; SecA regulator SecM 1274593..1275123 Photorhabdus asymbiotica 8167925 YP_003039959.1 CDS secA NC_012962.1 1275204 1277915 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 1275204..1277915 Photorhabdus asymbiotica 8167631 YP_003039960.1 CDS mutT NC_012962.1 1278032 1278424 D nucleoside triphosphate pyrophosphohydrolase 1278032..1278424 Photorhabdus asymbiotica 8167627 YP_003039961.1 CDS yacG NC_012962.1 1278463 1278660 R zinc-binding protein complement(1278463..1278660) Photorhabdus asymbiotica 8166891 YP_003039962.1 CDS yacF NC_012962.1 1278691 1279443 R hypothetical protein complement(1278691..1279443) Photorhabdus asymbiotica 8168518 YP_003039963.1 CDS coaE NC_012962.1 1279457 1280059 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(1279457..1280059) Photorhabdus asymbiotica 8168517 YP_003039964.1 CDS hofC NC_012962.1 1280151 1281350 R type IV pilin biogenesis protein complement(1280151..1281350) Photorhabdus asymbiotica 8168588 YP_003039965.1 CDS hofB NC_012962.1 1281347 1282795 R hypothetical protein complement(1281347..1282795) Photorhabdus asymbiotica 8167302 YP_003039966.1 CDS ppdD NC_012962.1 1282962 1283387 R putative major pilin subunit complement(1282962..1283387) Photorhabdus asymbiotica 8167301 YP_003039967.1 CDS nadC NC_012962.1 1283586 1284476 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase complement(1283586..1284476) Photorhabdus asymbiotica 8168296 YP_003039968.1 CDS ampE NC_012962.1 1285017 1285871 D involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 1285017..1285871 Photorhabdus asymbiotica 8166898 YP_003039969.1 CDS PAU_01132 NC_012962.1 1286116 1286694 D hypothetical protein 1286116..1286694 Photorhabdus asymbiotica 8166780 YP_003039970.1 CDS PAU_01133 NC_012962.1 1286703 1286924 D hypothetical protein 1286703..1286924 Photorhabdus asymbiotica 8167926 YP_003039971.1 CDS PAU_01134 NC_012962.1 1286981 1287154 R hypothetical protein complement(1286981..1287154) Photorhabdus asymbiotica 8167927 YP_003039972.1 CDS PAU_01135 NC_012962.1 1287272 1287535 D hypothetical protein 1287272..1287535 Photorhabdus asymbiotica 8167928 YP_003039973.1 CDS PAU_01136 NC_012962.1 1287574 1287942 D hypothetical protein 1287574..1287942 Photorhabdus asymbiotica 8167929 YP_003039974.1 CDS pdhR NC_012962.1 1288651 1289415 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 1288651..1289415 Photorhabdus asymbiotica 8167930 YP_003039975.1 CDS aceE NC_012962.1 1289604 1292267 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1289604..1292267 Photorhabdus asymbiotica 8168683 YP_003039976.1 CDS aceF NC_012962.1 1292282 1293874 D dihydrolipoamide acetyltransferase component of pyruvate dehydrogenas complex (e2) 1292282..1293874 Photorhabdus asymbiotica 8166727 YP_003039977.1 CDS lpdA NC_012962.1 1294066 1295496 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1294066..1295496 Photorhabdus asymbiotica 8166728 YP_003039978.1 CDS acnB NC_012962.1 1295964 1298561 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1295964..1298561 Photorhabdus asymbiotica 8165098 YP_003039979.1 CDS PAU_01142 NC_012962.1 1299438 1299734 R hypothetical protein complement(1299438..1299734) Photorhabdus asymbiotica 8166733 YP_003039980.1 CDS yacL NC_012962.1 1300107 1300478 D hypothetical protein 1300107..1300478 Photorhabdus asymbiotica 8167931 YP_003039981.1 CDS yggB NC_012962.1 1300616 1301488 D hypothetical protein 1300616..1301488 Photorhabdus asymbiotica 8168519 YP_003039982.1 CDS PAU_01145 NC_012962.1 1301726 1302256 R similarities with probable acetyltransferase gnat family; hypothetical protein complement(1301726..1302256) Photorhabdus asymbiotica 8167565 YP_003039983.1 CDS PAU_01146 NC_012962.1 1302253 1303551 R similar to putative heme-binding protein of yersinia pestis; hypothetical protein complement(1302253..1303551) Photorhabdus asymbiotica 8167932 YP_003039984.1 CDS PAU_01147 NC_012962.1 1303990 1304139 R hypothetical protein complement(1303990..1304139) Photorhabdus asymbiotica 8167933 YP_003039985.1 CDS argO NC_012962.1 1304736 1305365 D Involved in the export of arginine; arginine exporter protein 1304736..1305365 Photorhabdus asymbiotica 8167934 YP_003039986.1 CDS yggE NC_012962.1 1305478 1306200 D hypothetical protein 1305478..1306200 Photorhabdus asymbiotica 8165407 YP_003039987.1 CDS iciA NC_012962.1 1306197 1307099 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(1306197..1307099) Photorhabdus asymbiotica 8167566 YP_003039988.1 CDS rpiA NC_012962.1 1307227 1307886 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1307227..1307886 Photorhabdus asymbiotica 8167349 YP_003039989.1 CDS serA NC_012962.1 1308159 1309400 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1308159..1309400 Photorhabdus asymbiotica 8164895 YP_003039990.1 CDS ygfA NC_012962.1 1309579 1310175 R similar to putative ligase ygfa of escherichia coli; hypothetical protein complement(1309579..1310175) Photorhabdus asymbiotica 8167637 YP_003039991.1 CDS ygfE NC_012962.1 1310513 1310842 R Z-ring-associated protein complement(1310513..1310842) Photorhabdus asymbiotica 8169227 YP_003039992.1 CDS ygfB NC_012962.1 1311029 1311604 D the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 1311029..1311604 Photorhabdus asymbiotica 8167560 YP_003039993.1 CDS pepP NC_012962.1 1311653 1312969 D exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II 1311653..1312969 Photorhabdus asymbiotica 8167559 YP_003039994.1 CDS ubiH NC_012962.1 1312977 1314155 D Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 1312977..1314155 Photorhabdus asymbiotica 8168698 YP_003039995.1 CDS visC NC_012962.1 1314194 1315426 D probable monooxygenase; hypothetical protein 1314194..1315426 Photorhabdus asymbiotica 8168400 YP_003039996.1 CDS gcvT NC_012962.1 1315785 1316888 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 1315785..1316888 Photorhabdus asymbiotica 8168449 YP_003039997.1 CDS gcvH NC_012962.1 1317122 1317514 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1317122..1317514 Photorhabdus asymbiotica 8169326 YP_003039998.1 CDS gcvP NC_012962.1 1317602 1320478 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1317602..1320478 Photorhabdus asymbiotica 8168194 YP_003039999.1 CDS cdiB NC_012962.1 1320913 1322592 D hemolysin activation/secretion protein 1320913..1322592 Photorhabdus asymbiotica 8168195 YP_003040000.1 CDS PAU_01163 NC_012962.1 1322654 1331446 D hemagglutinin/hemolysin-related protein; hemagglutinin/hemolysin-like protein 1322654..1331446 Photorhabdus asymbiotica 8168548 YP_003040001.1 CDS PAU_01164 NC_012962.1 <1331466 1331687 D hypothetical protein <1331466..1331687 Photorhabdus asymbiotica 8167935 YP_003040002.1 CDS PAU_01165 NC_012962.1 1331855 1332118 D similar to hemagglutinin/hemolysin-related protein; hypothetical protein 1331855..1332118 Photorhabdus asymbiotica 8167936 YP_003040003.1 CDS fhaB NC_012962.1 1332449 1332847 D hypothetical protein 1332449..1332847 Photorhabdus asymbiotica 8167937 YP_003040004.1 CDS PAU_01167 NC_012962.1 1332874 1333284 D hypothetical protein 1332874..1333284 Photorhabdus asymbiotica 8166534 YP_003040005.1 CDS PAU_01168 NC_012962.1 1333411 1334016 D hypothetical protein 1333411..1334016 Photorhabdus asymbiotica 8167938 YP_003040006.1 CDS PAU_01169 NC_012962.1 1334024 1334341 D hypothetical protein 1334024..1334341 Photorhabdus asymbiotica 8167939 YP_003040007.1 CDS PAU_01170 NC_012962.1 1334513 1335007 D hypothetical protein 1334513..1335007 Photorhabdus asymbiotica 8167940 YP_003040008.1 CDS PAU_01171 NC_012962.1 1335096 1335596 D hypothetical protein 1335096..1335596 Photorhabdus asymbiotica 8167941 YP_003040009.1 CDS PAU_01172 NC_012962.1 1335584 1335697 D hypothetical protein 1335584..1335697 Photorhabdus asymbiotica 8167942 YP_003040010.1 CDS ydcW NC_012962.1 1337240 1338670 D putative betaine aldehyde dehydrogenase 1337240..1338670 Photorhabdus asymbiotica 8167943 YP_003040011.1 CDS PAU_01174 NC_012962.1 1338686 1339459 D hypothetical protein 1338686..1339459 Photorhabdus asymbiotica 8165422 YP_003040012.1 CDS PAU_01175 NC_012962.1 1339515 1340267 D regulatory protein, gntr 1339515..1340267 Photorhabdus asymbiotica 8167944 YP_003040013.1 CDS PAU_01176 NC_012962.1 1340303 1341043 D hypothetical protein 1340303..1341043 Photorhabdus asymbiotica 8167945 YP_003040014.1 CDS goaG NC_012962.1 1341080 1342357 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 1341080..1342357 Photorhabdus asymbiotica 8165655 YP_003040015.1 CDS yhaH NC_012962.1 1342479 1342865 D inner membrane protein yhah 1342479..1342865 Photorhabdus asymbiotica 8169255 YP_003040016.1 CDS PAU_01179 NC_012962.1 1342905 1344446 D fad dependent oxidoreductase 1342905..1344446 Photorhabdus asymbiotica 8167580 YP_003040017.1 CDS forZ NC_012962.1 1345297 1346730 D fortimicin a n-forimidoyltransferase 1345297..1346730 Photorhabdus asymbiotica 8165656 YP_003040018.1 CDS PAU_01181 NC_012962.1 1346727 1347578 D modification methylase hemk precursor 1346727..1347578 Photorhabdus asymbiotica 8168149 YP_003040019.1 CDS PAU_01182 NC_012962.1 1347603 1348877 D hypothetical protein 1347603..1348877 Photorhabdus asymbiotica 8165657 YP_003040020.1 CDS papB NC_012962.1 1348921 1349280 D chorismate mutase/prephenat dehydrogenase-like protein 1348921..1349280 Photorhabdus asymbiotica 8165658 YP_003040021.1 CDS PAU_01184 NC_012962.1 1349261 1351333 D p-aminobenzoic acid synthase-like protein 1349261..1351333 Photorhabdus asymbiotica 8165640 YP_003040022.1 CDS papC NC_012962.1 1351326 1352198 D dehydrogenase PapC-like protein 1351326..1352198 Photorhabdus asymbiotica 8165659 YP_003040023.1 CDS PAU_01186 NC_012962.1 1352218 1353750 D putative transmembrane-transport protein 1352218..1353750 Photorhabdus asymbiotica 8165641 YP_003040024.1 CDS alkB NC_012962.1 1353740 1353853 D hypothetical protein 1353740..1353853 Photorhabdus asymbiotica 8165660 YP_003040025.1 CDS hyp7 NC_012962.1 1353964 1354134 R hypothetical protein complement(1353964..1354134) Photorhabdus asymbiotica 8166771 YP_003040026.1 CDS PAU_01189 NC_012962.1 1354822 1356066 D hypothetical protein 1354822..1356066 Photorhabdus asymbiotica 8167346 YP_003040027.1 CDS PE_PGRS51 NC_012962.1 1356861 1358183 D hypothetical protein 1356861..1358183 Photorhabdus asymbiotica 8165661 YP_003040028.1 CDS PAU_01191 NC_012962.1 1358281 1359555 D hypothetical protein 1358281..1359555 Photorhabdus asymbiotica 8168703 YP_003040029.1 CDS PAU_01192 NC_012962.1 1359627 1359743 D hypothetical protein 1359627..1359743 Photorhabdus asymbiotica 8165662 YP_003040030.1 CDS PAU_01193 NC_012962.1 1360260 1361570 D hypothetical protein 1360260..1361570 Photorhabdus asymbiotica 8165663 YP_003040031.1 CDS PE_PGRS23 NC_012962.1 1362358 1363614 D hypothetical protein 1362358..1363614 Photorhabdus asymbiotica 8165664 YP_003040032.1 CDS wdpA NC_012962.1 1364638 1369086 D hypothetical protein 1364638..1369086 Photorhabdus asymbiotica 8168702 YP_003040033.1 CDS PAU_01196 NC_012962.1 1369079 1370353 D hypothetical protein 1369079..1370353 Photorhabdus asymbiotica 8168486 YP_003040034.1 CDS LOC496414 NC_012962.1 1370369 1371025 D hypothetical protein 1370369..1371025 Photorhabdus asymbiotica 8165665 YP_003040035.1 CDS PAU_01198 NC_012962.1 1371030 1373504 D similar to uncharacterized low-complexity pentapeptide repeat precursor; hypothetical protein 1371030..1373504 Photorhabdus asymbiotica 8165092 YP_003040036.1 CDS PAU_01199 NC_012962.1 1373557 1378692 D antibiotic synthase modules and related proteins; rifamycin polyketide synthase (fragment) 1373557..1378692 Photorhabdus asymbiotica 8165666 YP_003040037.1 CDS PAU_01200 NC_012962.1 1378769 1379023 D hypothetical protein 1378769..1379023 Photorhabdus asymbiotica 8165667 YP_003040038.1 CDS ISPlu10B NC_012962.1 1379069 1379197 D description: is630 insertion element; orf5 protein 1379069..1379197 Photorhabdus asymbiotica 8165668 YP_003040039.1 CDS FNV1726 NC_012962.1 1380120 1380470 D hypothetical protein 1380120..1380470 Photorhabdus asymbiotica 8165034 YP_003040040.1 CDS PAU_01203 NC_012962.1 1380460 1380753 D hypothetical protein 1380460..1380753 Photorhabdus asymbiotica 8168140 YP_003040041.1 CDS cysX NC_012962.1 1380776 1380940 D hypothetical protein 1380776..1380940 Photorhabdus asymbiotica 8165669 YP_003040042.1 CDS PAU_01205 NC_012962.1 1380964 1381878 D putative integral membrane protein precursor 1380964..1381878 Photorhabdus asymbiotica 8169146 YP_003040043.1 CDS PAU_01206 NC_012962.1 1382287 1382892 R hypothetical protein complement(1382287..1382892) Photorhabdus asymbiotica 8165670 YP_003040044.1 CDS ygfZ NC_012962.1 1382903 1383898 R physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; putative global regulator complement(1382903..1383898) Photorhabdus asymbiotica 8165671 YP_003040045.1 CDS ygfY NC_012962.1 1384075 1384341 D hypothetical protein 1384075..1384341 Photorhabdus asymbiotica 8167564 YP_003040046.1 CDS ygfX NC_012962.1 1384322 1384738 D hypothetical protein 1384322..1384738 Photorhabdus asymbiotica 8167563 YP_003040047.1 CDS fldB NC_012962.1 1384760 1385281 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB complement(1384760..1385281) Photorhabdus asymbiotica 8167562 YP_003040048.1 CDS xerD NC_012962.1 1385386 1386297 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 1385386..1386297 Photorhabdus asymbiotica 8166546 YP_003040049.1 CDS dsbC NC_012962.1 1386322 1387023 D DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC 1386322..1387023 Photorhabdus asymbiotica 8168505 YP_003040050.1 CDS recJ NC_012962.1 1387029 1388762 D 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 1387029..1388762 Photorhabdus asymbiotica 8168650 YP_003040051.1 CDS usp NC_012962.1 1389308 1390981 D similar to pyocin s2 and s1; pyocin s2-like protein 1389308..1390981 Photorhabdus asymbiotica 8165156 YP_003040052.1 CDS PAU_01215 NC_012962.1 1390978 1391445 D similar to pyocin s3 immunity protein and to photorhabdus luminescen proteins; hypothetical protein 1390978..1391445 Photorhabdus asymbiotica 8168423 YP_003040053.1 CDS PAU_01216 NC_012962.1 1392995 1393564 D putative colicin; hypothetical protein 1392995..1393564 Photorhabdus asymbiotica 8165672 YP_003040054.1 CDS col NC_012962.1 1393561 1393758 D Pyocins are polypeptide toxins produced by, and active against, bacteria. S-type pyocins cause cell death by DNA breakdown due to endonuclease activity.; s-type pyocin 1393561..1393758 Photorhabdus asymbiotica 8165673 YP_003040055.1 CDS imm NC_012962.1 1393742 1393996 D This family includes bacterial colicin and pyocin immunity proteins , . These immunity proteins can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity.; colicin-e7 immunity protein (imme7) (microcin-e7 immunity protein) 1393742..1393996 Photorhabdus asymbiotica 8168597 YP_003040056.1 CDS col NC_012962.1 1394171 1394515 D Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target . The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA; colicins have been classified according which receptors they bind to. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane; pyocin s2-like protein 1394171..1394515 Photorhabdus asymbiotica 8167366 YP_003040057.1 CDS PAU_01220 NC_012962.1 1394499 1394756 D This family includes bacterial colicin and pyocin immunity proteins , . These immunity proteins can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity.; colicin/pyocin immunity protein 1394499..1394756 Photorhabdus asymbiotica 8168598 YP_003040058.1 CDS PAU_01221 NC_012962.1 1395001 1395468 D similar to pyocin s3 immunity protein and to photorhabdus luminescen proteins; hypothetical protein 1395001..1395468 Photorhabdus asymbiotica 8165674 YP_003040059.1 CDS PAU_01222 NC_012962.1 1395718 1395825 D similar to pyocin S3 immunity protein; hypothetical protein 1395718..1395825 Photorhabdus asymbiotica 8165675 YP_003040060.1 CDS PAU_01223 NC_012962.1 1396264 1396398 R membrane protein complement(1396264..1396398) Photorhabdus asymbiotica 8165676 YP_003040061.1 CDS PAU_01224 NC_012962.1 1396968 1397075 D hypothetical protein 1396968..1397075 Photorhabdus asymbiotica 8165677 YP_003040062.1 CDS prfB NC_012962.1 1397333 1398265 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 1397333..1398265 Photorhabdus asymbiotica 8165678 YP_003040063.1 CDS lysS NC_012962.1 1398275 1399789 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1398275..1399789 Photorhabdus asymbiotica 8168310 YP_003040064.1 CDS PAU_01227 NC_012962.1 1400423 1401055 D antibiotic acetyltransferase 1400423..1401055 Photorhabdus asymbiotica 8169228 YP_003040065.1 CDS pqqE-4 NC_012962.1 1401696 1402565 D coenzyme pqq synthesis protein e (pqqe-4) 1401696..1402565 Photorhabdus asymbiotica 8165679 YP_003040066.1 CDS DAK NC_012962.1 1402562 1403326 D deoxynucleoside kinase family protein 1402562..1403326 Photorhabdus asymbiotica 8168307 YP_003040067.1 CDS yfaO NC_012962.1 1403407 1403832 D hypothetical protein 1403407..1403832 Photorhabdus asymbiotica 8169154 YP_003040068.1 CDS PAU_01231 NC_012962.1 1404009 1404854 R hypothetical protein complement(1404009..1404854) Photorhabdus asymbiotica 8165479 YP_003040069.1 CDS darR NC_012962.1 1405034 1406005 D putative transcription regulator 1405034..1406005 Photorhabdus asymbiotica 8165680 YP_003040070.1 CDS prpR NC_012962.1 1406018 1407700 R transcriptional activators which activates catabolism of propionate.; propionate catabolism operon regulatory protein complement(1406018..1407700) Photorhabdus asymbiotica 8169163 YP_003040071.1 CDS prpB NC_012962.1 1408005 1408895 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 1408005..1408895 Photorhabdus asymbiotica 8168328 YP_003040072.1 CDS prpC NC_012962.1 1408957 1410123 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 1408957..1410123 Photorhabdus asymbiotica 8168324 YP_003040073.1 CDS prpD NC_012962.1 1410182 1411633 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 1410182..1411633 Photorhabdus asymbiotica 8168325 YP_003040074.1 CDS prpE NC_012962.1 1411704 1413590 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 1411704..1413590 Photorhabdus asymbiotica 8168326 YP_003040075.1 CDS PAU_01238 NC_012962.1 1413803 1415347 R hypothetical protein complement(1413803..1415347) Photorhabdus asymbiotica 8168327 YP_003040076.1 CDS PAU_01239 NC_012962.1 1415519 1415659 R hypothetical protein complement(1415519..1415659) Photorhabdus asymbiotica 8165681 YP_003040077.1 CDS PAU_01240 NC_012962.1 1416470 1416952 D Putative transmembrane protein 1416470..1416952 Photorhabdus asymbiotica 8165682 YP_003040078.1 CDS oprC NC_012962.1 1417168 1419186 D putative outer membrane copper receptor protein; outer membrane receptor protein 1417168..1419186 Photorhabdus asymbiotica 8165683 YP_003040079.1 CDS metY NC_012962.1 1419298 1420572 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(1419298..1420572) Photorhabdus asymbiotica 8165585 YP_003040080.1 CDS norM NC_012962.1 1421200 1422558 D multidrug resistance protein; probable multidrug resistance protein norm (multidrug-efflu transporter) 1421200..1422558 Photorhabdus asymbiotica 8166320 YP_003040081.1 CDS PAU_01244 NC_012962.1 1423413 1424159 D similar to transferrin-binding protein tfba homolog; hypothetical protein 1423413..1424159 Photorhabdus asymbiotica 8166929 YP_003040082.1 CDS PAU_01245 NC_012962.1 1424254 1425741 D hypothetical protein 1424254..1425741 Photorhabdus asymbiotica 8165684 YP_003040083.1 CDS PAU_01246 NC_012962.1 1425794 1428793 D This entry represents the TonB-dependent outer membrane haem/haemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain haemoglobin or other haem-bearing globins) or legumes (which contain leghaemoglobin).; heme receptorHasR/TonB-dependent receptor 1425794..1428793 Photorhabdus asymbiotica 8165685 YP_003040084.1 CDS tonB NC_012962.1 1428877 1429689 D energy transducer TonB 1428877..1429689 Photorhabdus asymbiotica 8165686 YP_003040085.1 CDS PAU_01248 NC_012962.1 1429771 1430232 R similar to hypothetical acetyltransferase yjab of escherichia coli; hypothetical protein complement(1429771..1430232) Photorhabdus asymbiotica 8167521 YP_003040086.1 CDS lip-1 NC_012962.1 1430666 1432615 D lipase 1 precursor 1430666..1432615 Photorhabdus asymbiotica 8165687 YP_003040087.1 CDS PAU_01250 NC_012962.1 1432640 1432984 D hypothetical protein 1432640..1432984 Photorhabdus asymbiotica 8165082 YP_003040088.1 CDS PAU_01251 NC_012962.1 1433161 1433436 R hypothetical protein complement(1433161..1433436) Photorhabdus asymbiotica 8165688 YP_003040089.1 CDS PAU_01252 NC_012962.1 1434139 1434270 D hypothetical protein 1434139..1434270 Photorhabdus asymbiotica 8165689 YP_003040090.1 CDS prpA NC_012962.1 1434378 1434764 D similarities with fimbrial protein; hypothetical protein 1434378..1434764 Photorhabdus asymbiotica 8165690 YP_003040091.1 CDS ybcA NC_012962.1 1435209 1435874 D ybca protein transcriptional activator 1435209..1435874 Photorhabdus asymbiotica 8168323 YP_003040092.1 CDS PAU_01255 NC_012962.1 1436358 1436891 D similar to putative acetyl transferase; hypothetical protein 1436358..1436891 Photorhabdus asymbiotica 8166584 YP_003040093.1 CDS PAU_01256 NC_012962.1 1436973 1437527 D hypothetical protein 1436973..1437527 Photorhabdus asymbiotica 8165691 YP_003040094.1 CDS fic NC_012962.1 1437582 1438175 D cell filamentation protein; cell filamentation protein fic 1437582..1438175 Photorhabdus asymbiotica 8165692 YP_003040095.1 CDS scrK NC_012962.1 1439326 1440261 D phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 1439326..1440261 Photorhabdus asymbiotica 8166538 YP_003040096.1 CDS PAU_01259 NC_012962.1 1440452 1441870 D putative glycoporin 1440452..1441870 Photorhabdus asymbiotica 8167188 YP_003040097.1 CDS scrA NC_012962.1 1441940 1443310 D PTS system, sucrose-specific IIBC 1441940..1443310 Photorhabdus asymbiotica 8165693 YP_003040098.1 CDS scrB NC_012962.1 1443310 1444716 D sucrose-6-phosphate hydrolase 1443310..1444716 Photorhabdus asymbiotica 8167186 YP_003040099.1 CDS PAU_01262 NC_012962.1 1444845 1445078 D hypothetical protein 1444845..1445078 Photorhabdus asymbiotica 8167187 YP_003040100.1 CDS ISPlu16B NC_012962.1 1445195 1445395 D transposase, is630 family 1445195..1445395 Photorhabdus asymbiotica 8165694 YP_003040101.1 CDS psu NC_012962.1 <1445480 1445890 D transcriptional regulator; phage polarity suppression protein <1445480..1445890 Photorhabdus asymbiotica 8165036 YP_003040102.1 CDS psu NC_012962.1 1445805 1446032 D transcriptional regulator; phage polarity suppression protein 1445805..1446032 Photorhabdus asymbiotica 8168342 YP_003040103.1 CDS PAU_01266 NC_012962.1 1446240 1447868 R hypothetical protein complement(1446240..1447868) Photorhabdus asymbiotica 8168343 YP_003040104.1 CDS PAU_01267 NC_012962.1 1447865 1448902 R prophage cp4-57 integrase complement(1447865..1448902) Photorhabdus asymbiotica 8165695 YP_003040105.1 CDS PAU_01268 NC_012962.1 1449497 >1449622 R hypothetical protein complement(1449497..>1449622) Photorhabdus asymbiotica 8169229 YP_003040106.1 CDS smpB NC_012962.1 1449670 1450152 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1449670..1450152) Photorhabdus asymbiotica 8165697 YP_003040107.1 CDS yfjG NC_012962.1 1450310 1450744 D hypothetical protein 1450310..1450744 Photorhabdus asymbiotica 8167659 YP_003040108.1 CDS yfjF NC_012962.1 1450737 1451030 D hypothetical protein 1450737..1451030 Photorhabdus asymbiotica 8167549 YP_003040109.1 CDS smpA NC_012962.1 1451086 1451433 R hypothetical protein complement(1451086..1451433) Photorhabdus asymbiotica 8167548 YP_003040110.1 CDS recN NC_012962.1 1451546 1453207 R recombination and repair protein complement(1451546..1453207) Photorhabdus asymbiotica 8167658 YP_003040111.1 CDS ppnK NC_012962.1 1453295 1454173 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(1453295..1454173) Photorhabdus asymbiotica 8165157 YP_003040112.1 CDS PAU_01275 NC_012962.1 1454188 1454727 R hypothetical protein complement(1454188..1454727) Photorhabdus asymbiotica 8168300 YP_003040113.1 CDS ung NC_012962.1 1454932 1455612 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(1454932..1455612) Photorhabdus asymbiotica 8165698 YP_003040114.1 CDS yplA NC_012962.1 1456148 1457164 D phospholipase a 1456148..1457164 Photorhabdus asymbiotica 8168409 YP_003040115.1 CDS PAU_01278 NC_012962.1 1457180 1457767 D phospholipase A accessory protein 1457180..1457767 Photorhabdus asymbiotica 8169164 YP_003040116.1 CDS PAU_01279 NC_012962.1 1457799 1457984 R hypothetical protein complement(1457799..1457984) Photorhabdus asymbiotica 8165699 YP_003040117.1 CDS PAU_01280 NC_012962.1 1458530 1459378 D hypothetical protein 1458530..1459378 Photorhabdus asymbiotica 8165700 YP_003040118.1 CDS PAU_01281 NC_012962.1 1459380 1460540 D hypothetical protein 1459380..1460540 Photorhabdus asymbiotica 8165701 YP_003040119.1 CDS pcrB NC_012962.1 1460576 1461319 D hypothetical protein 1460576..1461319 Photorhabdus asymbiotica 8165702 YP_003040120.1 CDS idi NC_012962.1 1461335 1461865 D isopentenyl-diphosphate delta-isomerase 1 1461335..1461865 Photorhabdus asymbiotica 8165651 YP_003040121.1 CDS PAU_01284 NC_012962.1 1461959 1463383 D hypothetical protein 1461959..1463383 Photorhabdus asymbiotica 8167352 YP_003040122.1 CDS PAU_01285 NC_012962.1 1463955 1464353 D hypothetical protein 1463955..1464353 Photorhabdus asymbiotica 8165703 YP_003040123.1 CDS PAU_01286 NC_012962.1 1464350 1465063 D hypothetical protein 1464350..1465063 Photorhabdus asymbiotica 8165704 YP_003040124.1 CDS PAU_01287 NC_012962.1 1465085 1465699 D hypothetical protein 1465085..1465699 Photorhabdus asymbiotica 8165705 YP_003040125.1 CDS PAU_01288 NC_012962.1 1465968 1467188 D hypothetical protein 1465968..1467188 Photorhabdus asymbiotica 8165706 YP_003040126.1 CDS PAU_01289 NC_012962.1 1467189 1467893 D hypothetical protein 1467189..1467893 Photorhabdus asymbiotica 8165707 YP_003040127.1 CDS PAU_01290 NC_012962.1 1467931 1468821 D hypothetical protein 1467931..1468821 Photorhabdus asymbiotica 8165708 YP_003040128.1 CDS PAU_01291 NC_012962.1 1468847 1469656 D hypothetical protein 1468847..1469656 Photorhabdus asymbiotica 8165709 YP_003040129.1 CDS PAU_01292 NC_012962.1 1469742 1470488 D hypothetical protein 1469742..1470488 Photorhabdus asymbiotica 8165710 YP_003040130.1 CDS PAU_01293 NC_012962.1 1470617 1472281 D putative abc-transporter, membrane protein 1470617..1472281 Photorhabdus asymbiotica 8165711 YP_003040131.1 CDS hlyD NC_012962.1 1472274 1473488 D hemolysin protein; hemolysin secretion protein 1472274..1473488 Photorhabdus asymbiotica 8165712 YP_003040132.1 CDS PAU_01295 NC_012962.1 1474299 1474817 D hypothetical protein 1474299..1474817 Photorhabdus asymbiotica 8167293 YP_003040133.1 CDS srmB NC_012962.1 1474986 1476332 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(1474986..1476332) Photorhabdus asymbiotica 8165713 YP_003040134.1 CDS yfiC NC_012962.1 1476485 1477219 D hypothetical protein 1476485..1477219 Photorhabdus asymbiotica 8167678 YP_003040135.1 CDS nadB NC_012962.1 1477267 1478871 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1477267..1478871) Photorhabdus asymbiotica 8167544 YP_003040136.1 CDS rpoE NC_012962.1 1479074 1479643 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1479074..1479643 Photorhabdus asymbiotica 8166897 YP_003040137.1 CDS rseA NC_012962.1 1479683 1480336 D anti-RNA polymerase sigma factor SigE 1479683..1480336 Photorhabdus asymbiotica 8164932 YP_003040138.1 CDS rseB NC_012962.1 1480339 1481295 D periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 1480339..1481295 Photorhabdus asymbiotica 8167150 YP_003040139.1 CDS rseC NC_012962.1 1481295 1481759 D involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC 1481295..1481759 Photorhabdus asymbiotica 8167151 YP_003040140.1 CDS lepA NC_012962.1 1481955 1483751 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1481955..1483751 Photorhabdus asymbiotica 8167152 YP_003040141.1 CDS lepB NC_012962.1 1483772 1484752 D catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 1483772..1484752 Photorhabdus asymbiotica 8165071 YP_003040142.1 CDS rnc NC_012962.1 1484922 1485602 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1484922..1485602 Photorhabdus asymbiotica 8165072 YP_003040143.1 CDS era NC_012962.1 1485599 1486507 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1485599..1486507 Photorhabdus asymbiotica 8164872 YP_003040144.1 CDS recO NC_012962.1 1486518 1487243 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1486518..1487243 Photorhabdus asymbiotica 8168681 YP_003040145.1 CDS pdxJ NC_012962.1 1487393 1488124 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1487393..1488124 Photorhabdus asymbiotica 8165158 YP_003040146.1 CDS acpS NC_012962.1 1488124 1488504 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1488124..1488504 Photorhabdus asymbiotica 8168692 YP_003040147.1 CDS yfhL NC_012962.1 1488507 1488767 R putative ferredoxin-like protein complement(1488507..1488767) Photorhabdus asymbiotica 8166736 YP_003040148.1 CDS PAU_01311 NC_012962.1 1489210 1489644 R putative tail fiber assembly protein complement(1489210..1489644) Photorhabdus asymbiotica 8167543 YP_003040149.1 CDS PAU_01312 NC_012962.1 1489646 1490464 R putative tail fiber protein complement(1489646..1490464) Photorhabdus asymbiotica 8165714 YP_003040150.1 CDS PAU_01313 NC_012962.1 1490735 1491169 R tail fiber assembly protein complement(1490735..1491169) Photorhabdus asymbiotica 8165715 YP_003040151.1 CDS PAU_01314 NC_012962.1 1491220 1491942 R putative tail fiber protein complement(1491220..1491942) Photorhabdus asymbiotica 8165716 YP_003040152.1 CDS PAU_01315 NC_012962.1 1492345 1492779 R putative tail fiber protein of prophage cp-933x (tail fiber assembl protein) complement(1492345..1492779) Photorhabdus asymbiotica 8165717 YP_003040153.1 CDS PAU_01316 NC_012962.1 1492835 1493668 R putative tail fiber protein complement(1492835..1493668) Photorhabdus asymbiotica 8165718 YP_003040154.1 CDS PAU_01317 NC_012962.1 1494243 1494971 R putative tail fiber protein complement(1494243..1494971) Photorhabdus asymbiotica 8165719 YP_003040155.1 CDS PAU_01318 NC_012962.1 1495427 1495555 R putative tail fiber protein of prophage cp-933x (tail fiber assembl protein) complement(1495427..1495555) Photorhabdus asymbiotica 8165720 YP_003040156.1 CDS PAU_01319 NC_012962.1 1495856 1496452 D putative tail fiber protein 1495856..1496452 Photorhabdus asymbiotica 8165721 YP_003040157.1 CDS PAU_01320 NC_012962.1 1496687 1497196 D tRNA-specific adenosine deaminase 1496687..1497196 Photorhabdus asymbiotica 8165722 YP_003040158.1 CDS adiA NC_012962.1 1497208 1499514 R biodegradative arginine decarboxylase complement(1497208..1499514) Photorhabdus asymbiotica 8165723 YP_003040159.1 CDS yfhD NC_012962.1 1499641 >1500993 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase complement(1499641..>1500993) Photorhabdus asymbiotica 8166743 YP_003040160.1 CDS PAU_01323 NC_012962.1 1501097 1501195 D hypothetical protein 1501097..1501195 Photorhabdus asymbiotica 8167541 YP_003040161.1 CDS purL NC_012962.1 1501313 1505218 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1501313..1505218 Photorhabdus asymbiotica 8165724 YP_003040162.1 CDS PAU_01325 NC_012962.1 1505326 1505505 R hypothetical protein complement(1505326..1505505) Photorhabdus asymbiotica 8165104 YP_003040163.1 CDS yfhK NC_012962.1 1506271 1507746 D two-component signal transduction system,sensor-like His kinase regulatory protein 1506271..1507746 Photorhabdus asymbiotica 8169230 YP_003040164.1 CDS PAU_01327 NC_012962.1 1507746 1508582 D hypothetical protein 1507746..1508582 Photorhabdus asymbiotica 8167542 YP_003040165.1 CDS yfhA NC_012962.1 1508579 1509916 D putative 2-component transcriptional regulator 1508579..1509916 Photorhabdus asymbiotica 8165726 YP_003040166.1 CDS nadE NC_012962.1 1509984 1511606 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1509984..1511606 Photorhabdus asymbiotica 8167540 YP_003040167.1 CDS glnB NC_012962.1 1511622 1511960 D indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; nitrogen regulatory protein P-II 1 1511622..1511960 Photorhabdus asymbiotica 8166900 YP_003040168.1 CDS ehpF NC_012962.1 <1512601 1513674 D hypothetical protein <1512601..1513674 Photorhabdus asymbiotica 8167752 YP_003040169.1 CDS ehpG NC_012962.1 1513811 1514974 D similar to phenazine antibiotic biosynthesis protein; hypothetical protein 1513811..1514974 Photorhabdus asymbiotica 8168666 YP_003040170.1 CDS ehpG NC_012962.1 1514992 1515285 D similar to phenazine antibiotic biosynthesis protein; hypothetical protein 1514992..1515285 Photorhabdus asymbiotica 8168667 YP_003040171.1 CDS PAU_01334 NC_012962.1 1515539 1515793 D hypothetical protein 1515539..1515793 Photorhabdus asymbiotica 8168668 YP_003040172.1 CDS PAU_01335 NC_012962.1 1515951 1516085 D transposase, is4 family 1515951..1516085 Photorhabdus asymbiotica 8165727 YP_003040173.1 CDS PAU_01336 NC_012962.1 1516072 1516329 D hypothetical protein 1516072..1516329 Photorhabdus asymbiotica 8165728 YP_003040174.1 CDS PAU_01337 NC_012962.1 1516676 1520857 R putative protein involved in amino acid adenylation complement(1516676..1520857) Photorhabdus asymbiotica 8165729 YP_003040175.1 CDS mxcG NC_012962.1 1520921 1524811 R acyl carrier protein complement(1520921..1524811) Photorhabdus asymbiotica 8165730 YP_003040176.1 CDS mchD NC_012962.1 1524848 1525303 R hypothetical protein complement(1524848..1525303) Photorhabdus asymbiotica 8166893 YP_003040177.1 CDS mchC NC_012962.1 1525322 1526857 R hypothetical protein complement(1525322..1526857) Photorhabdus asymbiotica 8168968 YP_003040178.1 CDS PAU_01341 NC_012962.1 1526870 1526989 R hypothetical protein complement(1526870..1526989) Photorhabdus asymbiotica 8168967 YP_003040179.1 CDS mchB NC_012962.1 1527431 1527748 R mchb protein (microcin h47) complement(1527431..1527748) Photorhabdus asymbiotica 8165731 YP_003040180.1 CDS mclA NC_012962.1 1528927 1530213 D RTX secretion protein; microcin h47 secretion protein 1528927..1530213 Photorhabdus asymbiotica 8168966 YP_003040181.1 CDS mchF NC_012962.1 1530301 1530645 D RTX transport protein; putative microcin l transport protein 1530301..1530645 Photorhabdus asymbiotica 8168971 YP_003040182.1 CDS mchF NC_012962.1 1530685 1532322 D probable microcin h47 secretion atp-binding protein 1530685..1532322 Photorhabdus asymbiotica 8168969 YP_003040183.1 CDS PAU_01346 NC_012962.1 1533051 1533272 D hypothetical protein 1533051..1533272 Photorhabdus asymbiotica 8168970 YP_003040184.1 CDS PAU_01347 NC_012962.1 1533310 1533807 D hypothetical protein 1533310..1533807 Photorhabdus asymbiotica 8165732 YP_003040185.1 CDS PAU_01348 NC_012962.1 1533804 1534145 D hypothetical protein 1533804..1534145 Photorhabdus asymbiotica 8165733 YP_003040186.1 CDS PAU_01349 NC_012962.1 1534147 1534920 D hypothetical protein 1534147..1534920 Photorhabdus asymbiotica 8165734 YP_003040187.1 CDS PAU_01350 NC_012962.1 1534933 1535655 D hypothetical protein 1534933..1535655 Photorhabdus asymbiotica 8165735 YP_003040188.1 CDS PAU_01351 NC_012962.1 1535701 1536057 D hypothetical protein 1535701..1536057 Photorhabdus asymbiotica 8167864 YP_003040189.1 CDS hmpA NC_012962.1 1536311 1537501 R flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase complement(1536311..1537501) Photorhabdus asymbiotica 8167946 YP_003040190.1 CDS N NC_012962.1 1537575 1537694 D hypothetical protein 1537575..1537694 Photorhabdus asymbiotica 8167294 YP_003040191.1 CDS glyA NC_012962.1 1537867 1539120 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1537867..1539120 Photorhabdus asymbiotica 8166894 YP_003040192.1 CDS hcaT NC_012962.1 1539304 1540449 D putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; putative 3-phenylpropionic acid transporter 1539304..1540449 Photorhabdus asymbiotica 8169243 YP_003040193.1 CDS treR NC_012962.1 1540524 1541471 D regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 1540524..1541471 Photorhabdus asymbiotica 8169283 YP_003040194.1 CDS treB NC_012962.1 1541616 1543055 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunits IIBC 1541616..1543055 Photorhabdus asymbiotica 8167530 YP_003040195.1 CDS treC NC_012962.1 1543131 1544792 D trehalose-6-phosphate hydrolase 1543131..1544792 Photorhabdus asymbiotica 8167528 YP_003040196.1 CDS suhB NC_012962.1 1544879 1545682 R inositol monophosphatase complement(1544879..1545682) Photorhabdus asymbiotica 8167529 YP_003040197.1 CDS trmJ NC_012962.1 1545754 1546533 D tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 1545754..1546533 Photorhabdus asymbiotica 8167696 YP_003040198.1 CDS iscR NC_012962.1 1546621 1547115 D regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR 1546621..1547115 Photorhabdus asymbiotica 8168359 YP_003040199.1 CDS iscS NC_012962.1 1547166 1548380 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1547166..1548380 Photorhabdus asymbiotica 8165025 YP_003040200.1 CDS nifU NC_012962.1 1548406 1548792 D scaffold protein 1548406..1548792 Photorhabdus asymbiotica 8165027 YP_003040201.1 CDS iscA NC_012962.1 1548896 1549219 D forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein 1548896..1549219 Photorhabdus asymbiotica 8166922 YP_003040202.1 CDS hscB NC_012962.1 1549259 1549780 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1549259..1549780 Photorhabdus asymbiotica 8165024 YP_003040203.1 CDS hscA NC_012962.1 1549792 1551642 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1549792..1551642 Photorhabdus asymbiotica 8167327 YP_003040204.1 CDS fdx NC_012962.1 1551645 1551980 D ferredoxin, 2fe-2s 1551645..1551980 Photorhabdus asymbiotica 8167326 YP_003040205.1 CDS PAU_01368 NC_012962.1 1551999 1552199 D hypothetical protein 1551999..1552199 Photorhabdus asymbiotica 8166520 YP_003040206.1 CDS pepB NC_012962.1 1552383 1553678 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 1552383..1553678 Photorhabdus asymbiotica 8167947 YP_003040207.1 CDS PAU_01370 NC_012962.1 1553713 1554135 D similarities with rhodanese-like protein sseb of escherichia coli; hypothetical protein 1553713..1554135 Photorhabdus asymbiotica 8168696 YP_003040208.1 CDS PAU_01371 NC_012962.1 1554160 1554315 D hypothetical protein 1554160..1554315 Photorhabdus asymbiotica 8167948 YP_003040209.1 CDS cysK NC_012962.1 1554902 1555813 D cysteine synthase 1554902..1555813 Photorhabdus asymbiotica 8167949 YP_003040210.1 CDS PAU_01373 NC_012962.1 1555831 1557111 D hypothetical protein 1555831..1557111 Photorhabdus asymbiotica 8169136 YP_003040211.1 CDS PAU_01374 NC_012962.1 1557343 1557516 D hypothetical protein 1557343..1557516 Photorhabdus asymbiotica 8167950 YP_003040212.1 CDS PAU_01375 NC_012962.1 1557518 1558144 D hypothetical protein 1557518..1558144 Photorhabdus asymbiotica 8167951 YP_003040213.1 CDS PAU_01376 NC_012962.1 1558536 1558640 D hypothetical protein 1558536..1558640 Photorhabdus asymbiotica 8167952 YP_003040214.1 CDS PAU_01377 NC_012962.1 1558650 1558850 D hypothetical protein 1558650..1558850 Photorhabdus asymbiotica 8167953 YP_003040215.1 CDS PAU_01378 NC_012962.1 1559007 1559807 D hypothetical protein 1559007..1559807 Photorhabdus asymbiotica 8167954 YP_003040216.1 CDS PAU_01379 NC_012962.1 1560553 1560687 R hypothetical protein complement(1560553..1560687) Photorhabdus asymbiotica 8167955 YP_003040217.1 CDS PAU_01380 NC_012962.1 1560858 1565894 D hypothetical protein 1560858..1565894 Photorhabdus asymbiotica 8167956 YP_003040218.1 CDS pbpC NC_012962.1 1565949 1568267 D penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 1565949..1568267 Photorhabdus asymbiotica 8167957 YP_003040219.1 CDS ndk NC_012962.1 1568411 1568917 D nucleoside diphosphate kinase 1568411..1568917 Photorhabdus asymbiotica 8165645 YP_003040220.1 CDS yfgB NC_012962.1 1569101 1570279 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1569101..1570279 Photorhabdus asymbiotica 8166912 YP_003040221.1 CDS pilF NC_012962.1 1570363 1570764 D putative fimbrial biogenesis protein 1570363..1570764 Photorhabdus asymbiotica 8167537 YP_003040222.1 CDS yfgA NC_012962.1 1570886 1571881 D cytoskeletal protein RodZ 1570886..1571881 Photorhabdus asymbiotica 8168746 YP_003040223.1 CDS ispG NC_012962.1 1571952 1573073 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1571952..1573073 Photorhabdus asymbiotica 8167536 YP_003040224.1 CDS hisS NC_012962.1 1573194 1574471 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1573194..1574471 Photorhabdus asymbiotica 8165032 YP_003040225.1 CDS PAU_01388 NC_012962.1 1574483 1575103 D hypothetical protein 1574483..1575103 Photorhabdus asymbiotica 8169322 YP_003040226.1 CDS PAU_01389 NC_012962.1 1575117 1576289 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1575117..1576289 Photorhabdus asymbiotica 8167958 YP_003040227.1 CDS engA NC_012962.1 1576558 1578057 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1576558..1578057 Photorhabdus asymbiotica 8167959 YP_003040228.1 CDS PAU_01391 NC_012962.1 1578079 1578396 R hypothetical protein complement(1578079..1578396) Photorhabdus asymbiotica 8168675 YP_003040229.1 CDS PAU_01392 NC_012962.1 1578556 1579668 R extracellular metalloproteinase-like protein complement(1578556..1579668) Photorhabdus asymbiotica 8167960 YP_003040230.1 CDS hemF NC_012962.1 1579900 1580808 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(1579900..1580808) Photorhabdus asymbiotica 8167961 YP_003040231.1 CDS ypeA NC_012962.1 1580947 1581378 D putative acetyltransferase 1580947..1581378 Photorhabdus asymbiotica 8169295 YP_003040232.1 CDS ygiW NC_012962.1 1581422 1581841 R hypothetical protein complement(1581422..1581841) Photorhabdus asymbiotica 8165016 YP_003040233.1 CDS PAU_01396 NC_012962.1 1582022 1582630 D hypothetical protein 1582022..1582630 Photorhabdus asymbiotica 8167577 YP_003040234.1 CDS cysP NC_012962.1 1582926 1583948 D thiosulfate transporter subunit 1582926..1583948 Photorhabdus asymbiotica 8167962 YP_003040235.1 CDS cysU NC_012962.1 1583948 1584781 D sulfate/thiosulfate transporter subunit 1583948..1584781 Photorhabdus asymbiotica 8169141 YP_003040236.1 CDS cysW NC_012962.1 1584781 1585626 D Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit 1584781..1585626 Photorhabdus asymbiotica 8169144 YP_003040237.1 CDS cysA NC_012962.1 1585619 1586728 D sulfate/thiosulfate transporter subunit 1585619..1586728 Photorhabdus asymbiotica 8169145 YP_003040238.1 CDS cysM NC_012962.1 1586868 1587749 D catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1586868..1587749 Photorhabdus asymbiotica 8169125 YP_003040239.1 CDS crr NC_012962.1 1588093 1588602 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit complement(1588093..1588602) Photorhabdus asymbiotica 8169139 YP_003040240.1 CDS ptsI NC_012962.1 1588652 1590379 R Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase complement(1588652..1590379) Photorhabdus asymbiotica 8169097 YP_003040241.1 CDS ptsH NC_012962.1 1590564 1590821 R PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr complement(1590564..1590821) Photorhabdus asymbiotica 8168349 YP_003040242.1 CDS cysK NC_012962.1 1591150 1592103 R cysteine synthase complement(1591150..1592103) Photorhabdus asymbiotica 8168348 YP_003040243.1 CDS cysZ NC_012962.1 1592225 1593001 R putative role in sulfur assimilation; putative sulfate transport protein CysZ complement(1592225..1593001) Photorhabdus asymbiotica 8169137 YP_003040244.1 CDS zipA NC_012962.1 1593222 1594133 D interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 1593222..1594133 Photorhabdus asymbiotica 8169147 YP_003040245.1 CDS ligA NC_012962.1 1594195 1596213 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1594195..1596213 Photorhabdus asymbiotica 8169193 YP_003040246.1 CDS nupC NC_012962.1 1596383 1597750 D nucleoside permease nupc 1596383..1597750 Photorhabdus asymbiotica 8165081 YP_003040247.1 CDS PAU_01410 NC_012962.1 1597835 1598059 D hypothetical protein 1597835..1598059 Photorhabdus asymbiotica 8166957 YP_003040248.1 CDS gltX NC_012962.1 1598611 1600029 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1598611..1600029) Photorhabdus asymbiotica 8169232 YP_003040249.1 CDS glk NC_012962.1 1601964 1602929 D catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1601964..1602929 Photorhabdus asymbiotica 8169242 YP_003040250.1 CDS vacJ NC_012962.1 1604248 1605000 D vacj lipoprotein 1604248..1605000 Photorhabdus asymbiotica 8169325 YP_003040251.1 CDS fadL NC_012962.1 1605076 1606401 R membrane proteins of uncertain function that are involved in toluene catabolism; long-chain fatty acid outer membrane transporter complement(1605076..1606401) Photorhabdus asymbiotica 8168440 YP_003040252.1 CDS PAU_01415 NC_012962.1 1606753 1607034 D hypothetical protein 1606753..1607034 Photorhabdus asymbiotica 8166506 YP_003040253.1 CDS fadI NC_012962.1 1607326 1608636 D FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1607326..1608636 Photorhabdus asymbiotica 8167964 YP_003040254.1 CDS fadJ NC_012962.1 1608636 1610819 D multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1608636..1610819 Photorhabdus asymbiotica 8166504 YP_003040255.1 CDS sixA NC_012962.1 1611153 1611635 D phosphohistidine phosphatase 1611153..1611635 Photorhabdus asymbiotica 8166505 YP_003040256.1 CDS yfcN NC_012962.1 1611640 1612185 R hypothetical protein complement(1611640..1612185) Photorhabdus asymbiotica 8167647 YP_003040257.1 CDS hutI NC_012962.1 1612419 1613663 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 1612419..1613663 Photorhabdus asymbiotica 8165489 YP_003040258.1 CDS hutG NC_012962.1 1613681 1614637 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 1613681..1614637 Photorhabdus asymbiotica 8167342 YP_003040259.1 CDS hutC NC_012962.1 1614745 1615476 D hutc protein (putative gntr-family transcriptional regulatory protein (putative repressor) 1614745..1615476 Photorhabdus asymbiotica 8167340 YP_003040260.1 CDS hutU NC_012962.1 1615920 1617599 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1615920..1617599 Photorhabdus asymbiotica 8167339 YP_003040261.1 CDS hutH NC_012962.1 1617608 1619152 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 1617608..1619152 Photorhabdus asymbiotica 8167343 YP_003040262.1 CDS PAU_01425 NC_012962.1 1619238 1620629 D amino acid permease 1619238..1620629 Photorhabdus asymbiotica 8167341 YP_003040263.1 CDS PAU_01426 NC_012962.1 1620865 1621797 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1620865..1621797 Photorhabdus asymbiotica 8167965 YP_003040264.1 CDS aroC NC_012962.1 1621878 1622963 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1621878..1622963 Photorhabdus asymbiotica 8167966 YP_003040265.1 CDS PAU_01428 NC_012962.1 1623051 1623851 D hypothetical protein 1623051..1623851 Photorhabdus asymbiotica 8165500 YP_003040266.1 CDS PAU_01429 NC_012962.1 1623875 1624426 D hypothetical protein 1623875..1624426 Photorhabdus asymbiotica 8167967 YP_003040267.1 CDS PAU_01430 NC_012962.1 1624448 1624726 D hypothetical protein 1624448..1624726 Photorhabdus asymbiotica 8167968 YP_003040268.1 CDS PAU_01431 NC_012962.1 1624837 >1625139 R hypothetical protein complement(1624837..>1625139) Photorhabdus asymbiotica 8167969 YP_003040269.1 CDS dinJ NC_012962.1 1625135 1625434 R damage-inducible protein j (damage-inducible protein dinj) complement(1625135..1625434) Photorhabdus asymbiotica 8167970 YP_003040270.1 CDS mnmC NC_012962.1 1625538 1627607 R catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase complement(1625538..1627607) Photorhabdus asymbiotica 8168622 YP_003040271.1 CDS PAU_01434 NC_012962.1 1627777 1628475 R lysine exporter protein (lyse/ygga) complement(1627777..1628475) Photorhabdus asymbiotica 8165488 YP_003040272.1 CDS lrp NC_012962.1 1628603 1629061 D leucine-responsive regulatory protein 1628603..1629061 Photorhabdus asymbiotica 8167971 YP_003040273.1 CDS PAU_01436 NC_012962.1 1629676 1630179 R hypothetical protein complement(1629676..1630179) Photorhabdus asymbiotica 8168925 YP_003040274.1 CDS env NC_012962.1 1630722 1630949 R hypothetical protein complement(1630722..1630949) Photorhabdus asymbiotica 8167972 YP_003040275.1 CDS fabB NC_012962.1 1630971 1632185 D FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I 1630971..1632185 Photorhabdus asymbiotica 8168678 YP_003040276.1 CDS PAU_01439 NC_012962.1 1632433 1632879 D hypothetical protein 1632433..1632879 Photorhabdus asymbiotica 8166490 YP_003040277.1 CDS tctA NC_012962.1 1633212 1634732 R hypothetical protein complement(1633212..1634732) Photorhabdus asymbiotica 8167973 YP_003040278.1 CDS tctB NC_012962.1 1634743 1635174 R hypothetical protein complement(1634743..1635174) Photorhabdus asymbiotica 8167483 YP_003040279.1 CDS tctC NC_012962.1 1635189 1636169 R hypothetical protein complement(1635189..1636169) Photorhabdus asymbiotica 8167484 YP_003040280.1 CDS PAU_01443 NC_012962.1 1636544 1637185 D hypothetical protein 1636544..1637185 Photorhabdus asymbiotica 8167485 YP_003040281.1 CDS PAU_01444 NC_012962.1 1637609 1638232 D hypothetical protein 1637609..1638232 Photorhabdus asymbiotica 8167974 YP_003040282.1 CDS tctD NC_012962.1 1638852 1639520 D two-component response regulator 1638852..1639520 Photorhabdus asymbiotica 8167975 YP_003040283.1 CDS tctE NC_012962.1 1639517 1640938 D sensor protein 1639517..1640938 Photorhabdus asymbiotica 8167486 YP_003040284.1 CDS rhaT12 NC_012962.1 1640919 1641833 R hypothetical protein complement(1640919..1641833) Photorhabdus asymbiotica 8167487 YP_003040285.1 CDS PAU_01448 NC_012962.1 1642170 1642337 D hypothetical protein 1642170..1642337 Photorhabdus asymbiotica 8165173 YP_003040286.1 CDS pdxB NC_012962.1 1642427 1643554 D erythronate-4-phosphate dehydrogenase 1642427..1643554 Photorhabdus asymbiotica 8167976 YP_003040287.1 CDS usg NC_012962.1 1643611 1644621 D putative semialdehyde dehydrogenase 1643611..1644621 Photorhabdus asymbiotica 8168690 YP_003040288.1 CDS truA NC_012962.1 1644663 1645457 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1644663..1645457 Photorhabdus asymbiotica 8168421 YP_003040289.1 CDS dedA NC_012962.1 1645504 1646193 D hypothetical protein 1645504..1646193 Photorhabdus asymbiotica 8168369 YP_003040290.1 CDS accD NC_012962.1 1646295 1647236 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1646295..1647236 Photorhabdus asymbiotica 8168605 YP_003040291.1 CDS folC NC_012962.1 1647229 1648527 D bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1647229..1648527 Photorhabdus asymbiotica 8166724 YP_003040292.1 CDS dedD NC_012962.1 1648517 1649209 D hypothetical protein 1648517..1649209 Photorhabdus asymbiotica 8168144 YP_003040293.1 CDS cvpA NC_012962.1 1649409 1649915 D membrane protein required for colicin V production; colicin V production protein 1649409..1649915 Photorhabdus asymbiotica 8168606 YP_003040294.1 CDS purF NC_012962.1 1649930 1651447 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1649930..1651447 Photorhabdus asymbiotica 8169112 YP_003040295.1 CDS ubiX NC_012962.1 1651491 1652075 D catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1651491..1652075 Photorhabdus asymbiotica 8165101 YP_003040296.1 CDS PAU_01459 NC_012962.1 1652056 1652970 R putative sugar nucleotide epimerase complement(1652056..1652970) Photorhabdus asymbiotica 8168401 YP_003040297.1 CDS yfcG NC_012962.1 1653098 1653718 R putative s-transferase complement(1653098..1653718) Photorhabdus asymbiotica 8167977 YP_003040298.1 CDS pdl NC_012962.1 1654444 1656336 D hypothetical protein 1654444..1656336 Photorhabdus asymbiotica 8165487 YP_003040299.1 CDS yfcD NC_012962.1 1656778 1657323 D similar to unknown protein yfcd of escherichia coli; hypothetical protein 1656778..1657323 Photorhabdus asymbiotica 8168684 YP_003040300.1 CDS PAU_01463 NC_012962.1 1657795 1658085 D hypothetical protein 1657795..1658085 Photorhabdus asymbiotica 8165486 YP_003040301.1 CDS PAU_01464 NC_012962.1 1658369 1658563 D hypothetical protein 1658369..1658563 Photorhabdus asymbiotica 8167978 YP_003040302.1 CDS PAU_01465 NC_012962.1 1658544 1658891 D hypothetical protein 1658544..1658891 Photorhabdus asymbiotica 8167979 YP_003040303.1 CDS PAU_01466 NC_012962.1 1658916 1659233 R hypothetical protein complement(1658916..1659233) Photorhabdus asymbiotica 8167980 YP_003040304.1 CDS PAU_01467 NC_012962.1 1659255 1659362 R hypothetical protein complement(1659255..1659362) Photorhabdus asymbiotica 8167981 YP_003040305.1 CDS lsrG NC_012962.1 1659810 1660109 R autoinducer-2 (AI-2) modifying protein LsrG complement(1659810..1660109) Photorhabdus asymbiotica 8167982 YP_003040306.1 CDS yneB NC_012962.1 1660121 1660996 R aldolase complement(1660121..1660996) Photorhabdus asymbiotica 8168929 YP_003040307.1 CDS lsrR NC_012962.1 1661683 1662690 D putative transcriptional regulator, sorc family (putative sorc-typ transcriptional regulator) 1661683..1662690 Photorhabdus asymbiotica 8164999 YP_003040308.1 CDS PAU_01471 NC_012962.1 1662777 1664369 D similar to hypothetical sugar kinase ydev of escherichia coli; autoinducer-2 (AI-2) kinase 1662777..1664369 Photorhabdus asymbiotica 8168930 YP_003040309.1 CDS sypC NC_012962.1 1666017 1675949 D syringomycin synthetase-like protein 1666017..1675949 Photorhabdus asymbiotica 8167983 YP_003040310.1 CDS cdiA NC_012962.1 1676439 1676888 R A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.; putative haemagglutinin cdia complement(1676439..1676888) Photorhabdus asymbiotica 8167459 YP_003040311.1 CDS PAU_01474 NC_012962.1 1677121 1677312 R hypothetical protein complement(1677121..1677312) Photorhabdus asymbiotica 8168546 YP_003040312.1 CDS PAU_01475 NC_012962.1 1677326 1677487 R hypothetical protein complement(1677326..1677487) Photorhabdus asymbiotica 8167984 YP_003040313.1 CDS PAU_01476 NC_012962.1 1677807 1678544 R putative hemolysin; hypothetical protein complement(1677807..1678544) Photorhabdus asymbiotica 8167985 YP_003040314.1 CDS PAU_01477 NC_012962.1 1678561 1678803 R hypothetical protein complement(1678561..1678803) Photorhabdus asymbiotica 8167986 YP_003040315.1 CDS cdiA NC_012962.1 1678800 1679423 R Putative adhesin/hemagglutinin; haemagluttinin-like protein complement(1678800..1679423) Photorhabdus asymbiotica 8167987 YP_003040316.1 CDS PAU_01479 NC_012962.1 1679474 1679929 R hypothetical protein complement(1679474..1679929) Photorhabdus asymbiotica 8168547 YP_003040317.1 CDS PAU_01480 NC_012962.1 1679933 1680652 R hypothetical protein complement(1679933..1680652) Photorhabdus asymbiotica 8167988 YP_003040318.1 CDS PAU_01481 NC_012962.1 1680939 1681157 R hypothetical protein complement(1680939..1681157) Photorhabdus asymbiotica 8167989 YP_003040319.1 CDS PAU_01482 NC_012962.1 1681154 1681780 R hypothetical protein complement(1681154..1681780) Photorhabdus asymbiotica 8167990 YP_003040320.1 CDS fhaB2 NC_012962.1 1682096 1682773 R similar to putative adhesin from Y.pestis; hypothetical protein complement(1682096..1682773) Photorhabdus asymbiotica 8167991 YP_003040321.1 CDS PAU_01484 NC_012962.1 1682961 1683512 R hypothetical protein complement(1682961..1683512) Photorhabdus asymbiotica 8166536 YP_003040322.1 CDS PAU_01485 NC_012962.1 1683515 1692535 R putative adhesin/hemagglutinin/hemolysin complement(1683515..1692535) Photorhabdus asymbiotica 8167992 YP_003040323.1 CDS PAU_01486 NC_012962.1 1692592 >1693911 R similar to hemolysin secretion/activation protein; putative hemolysin activator hlyb complement(1692592..>1693911) Photorhabdus asymbiotica 8167993 YP_003040324.1 CDS PAU_01487 NC_012962.1 1693967 1694473 D transposase is3/is911 1693967..1694473 Photorhabdus asymbiotica 8167994 YP_003040325.1 CDS yadA NC_012962.1 1694542 1695315 D yada protein 1694542..1695315 Photorhabdus asymbiotica 8167995 YP_003040326.1 CDS PAU_01489 NC_012962.1 1695339 1695686 R Haemolysin and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate.; putative hemolysin activator hlyb complement(1695339..1695686) Photorhabdus asymbiotica 8166564 YP_003040327.1 CDS PAU_01490 NC_012962.1 1696131 1696412 R putative IS30 family transposase complement(1696131..1696412) Photorhabdus asymbiotica 8167996 YP_003040328.1 CDS sypB NC_012962.1 1697532 1713905 D similar to proteins involved in antibiotic biosynthesis; syringopeptin synthetase b 1697532..1713905 Photorhabdus asymbiotica 8167997 YP_003040329.1 CDS PAU_01492 NC_012962.1 1714294 1714524 D hypothetical protein 1714294..1714524 Photorhabdus asymbiotica 8167458 YP_003040330.1 CDS PAU_01493 NC_012962.1 1715459 1715839 R hemolysin/hemagglutinin-like protein HecA precursor; hypothetical protein complement(1715459..1715839) Photorhabdus asymbiotica 8167998 YP_003040331.1 CDS PAU_01494 NC_012962.1 1715858 1716202 R hemagglutinin-like protein; putative hemagglutinin-like secreted protein complement(1715858..1716202) Photorhabdus asymbiotica 8167999 YP_003040332.1 CDS tnp NC_012962.1 1716451 1717425 R transposase complement(1716451..1717425) Photorhabdus asymbiotica 8168000 YP_003040333.1 CDS PAU_01496 NC_012962.1 1717785 1718174 R putative hemolysin activator/exporter; putative hemolysin activator/exporter, tps family precursor complement(1717785..1718174) Photorhabdus asymbiotica 8167515 YP_003040334.1 CDS argM NC_012962.1 1719290 1720498 D catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1719290..1720498 Photorhabdus asymbiotica 8168001 YP_003040335.1 CDS astA NC_012962.1 1720520 1721551 D arginine n-succinyltransferase 1720520..1721551 Photorhabdus asymbiotica 8166315 YP_003040336.1 CDS astD NC_012962.1 1721555 1723030 D succinylglutamic semialdehyde dehydrogenase 1721555..1723030 Photorhabdus asymbiotica 8165525 YP_003040337.1 CDS astB NC_012962.1 1723058 1724401 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1723058..1724401 Photorhabdus asymbiotica 8165527 YP_003040338.1 CDS astE NC_012962.1 1724414 1725397 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1724414..1725397 Photorhabdus asymbiotica 8165526 YP_003040339.1 CDS cycA NC_012962.1 1725499 1726953 D cyca serine/alanine/glycine apc transporter 1725499..1726953 Photorhabdus asymbiotica 8165528 YP_003040340.1 CDS PAU_01503 NC_012962.1 1727579 1728220 D similar to unknown protein of photorhabdus; hypothetical protein 1727579..1728220 Photorhabdus asymbiotica 8169116 YP_003040341.1 CDS PAU_01504 NC_012962.1 1728792 1729439 D similar to unknown protein of photorhabdus; hypothetical protein 1728792..1729439 Photorhabdus asymbiotica 8168002 YP_003040342.1 CDS PAU_01505 NC_012962.1 1729857 1730510 D similar to unknown protein of photorhabdus; hypothetical protein 1729857..1730510 Photorhabdus asymbiotica 8168003 YP_003040343.1 CDS PAU_01506 NC_012962.1 1730588 1731001 R hypothetical protein complement(1730588..1731001) Photorhabdus asymbiotica 8168004 YP_003040344.1 CDS PAU_01507 NC_012962.1 1731036 1731218 R hypothetical protein complement(1731036..1731218) Photorhabdus asymbiotica 8168005 YP_003040345.1 CDS PAU_01508 NC_012962.1 1731233 1731364 D hypothetical protein 1731233..1731364 Photorhabdus asymbiotica 8168006 YP_003040346.1 CDS PAU_01510 NC_012962.1 1731958 1733016 D hypothetical protein 1731958..1733016 Photorhabdus asymbiotica 8168008 YP_003040347.1 CDS yfcA NC_012962.1 1733283 1734065 D inner membrane protein yfca 1733283..1734065 Photorhabdus asymbiotica 8168009 YP_003040348.1 CDS pta NC_012962.1 1734311 1736437 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(1734311..1736437) Photorhabdus asymbiotica 8165485 YP_003040349.1 CDS ackA NC_012962.1 1736522 1737724 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1736522..1737724) Photorhabdus asymbiotica 8168344 YP_003040350.1 CDS yfbV NC_012962.1 1738118 1738573 D hypothetical protein 1738118..1738573 Photorhabdus asymbiotica 8166730 YP_003040351.1 CDS yfbS NC_012962.1 1738773 1740605 D membrane protein 1738773..1740605 Photorhabdus asymbiotica 8165484 YP_003040352.1 CDS yfbR NC_012962.1 1740602 1741195 R hypothetical protein complement(1740602..1741195) Photorhabdus asymbiotica 8165483 YP_003040353.1 CDS yfbQ NC_012962.1 1741887 1743146 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(1741887..1743146) Photorhabdus asymbiotica 8165482 YP_003040354.1 CDS lrhA NC_012962.1 1743914 1744843 D transcriptional regulator lrha (hexa) 1743914..1744843 Photorhabdus asymbiotica 8165481 YP_003040355.1 CDS PAU_01519 NC_012962.1 1745046 1745153 R hypothetical protein complement(1745046..1745153) Photorhabdus asymbiotica 8168924 YP_003040356.1 CDS nuoA NC_012962.1 1745550 1745999 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 1745550..1745999 Photorhabdus asymbiotica 8168010 YP_003040357.1 CDS nuoB NC_012962.1 1746016 1746690 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1746016..1746690 Photorhabdus asymbiotica 8166944 YP_003040358.1 CDS nuoC NC_012962.1 1746812 1748611 D NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 1746812..1748611 Photorhabdus asymbiotica 8166945 YP_003040359.1 CDS nuoE NC_012962.1 1748614 1749162 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 1748614..1749162 Photorhabdus asymbiotica 8166946 YP_003040360.1 CDS nuoF NC_012962.1 1749159 1750523 D shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 1749159..1750523 Photorhabdus asymbiotica 8166947 YP_003040361.1 CDS nuoG NC_012962.1 1750590 1753325 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1750590..1753325 Photorhabdus asymbiotica 8166948 YP_003040362.1 CDS nuoH NC_012962.1 1753322 1754299 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1753322..1754299 Photorhabdus asymbiotica 8166949 YP_003040363.1 CDS nuoI NC_012962.1 1754313 1754855 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1754313..1754855 Photorhabdus asymbiotica 8166950 YP_003040364.1 CDS nuoJ NC_012962.1 1754868 1755413 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1754868..1755413 Photorhabdus asymbiotica 8166951 YP_003040365.1 CDS nuoK NC_012962.1 1755410 1755712 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1755410..1755712 Photorhabdus asymbiotica 8166952 YP_003040366.1 CDS nuoL NC_012962.1 1755709 1757556 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1755709..1757556 Photorhabdus asymbiotica 8166953 YP_003040367.1 CDS nuoM NC_012962.1 1757577 1759097 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1757577..1759097 Photorhabdus asymbiotica 8166954 YP_003040368.1 CDS nuoN NC_012962.1 1759104 1760561 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1759104..1760561 Photorhabdus asymbiotica 8166955 YP_003040369.1 CDS PAU_01533 NC_012962.1 1760745 1761806 R hypothetical protein complement(1760745..1761806) Photorhabdus asymbiotica 8166956 YP_003040370.1 CDS xaxA NC_012962.1 1761851 1763077 R hypothetical protein complement(1761851..1763077) Photorhabdus asymbiotica 8168011 YP_003040371.1 CDS PAU_01535 NC_012962.1 1763806 1763982 D hypothetical protein 1763806..1763982 Photorhabdus asymbiotica 8168503 YP_003040372.1 CDS menF NC_012962.1 1764030 1764134 D hypothetical protein 1764030..1764134 Photorhabdus asymbiotica 8168012 YP_003040373.1 CDS menF NC_012962.1 1764173 1764343 D hypothetical protein 1764173..1764343 Photorhabdus asymbiotica 8168987 YP_003040374.1 CDS menD NC_012962.1 1764410 1766083 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 1764410..1766083 Photorhabdus asymbiotica 8168988 YP_003040375.1 CDS PAU_01539 NC_012962.1 1766080 1766859 D catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB 1766080..1766859 Photorhabdus asymbiotica 8168985 YP_003040376.1 CDS menB NC_012962.1 1766862 1767719 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1766862..1767719 Photorhabdus asymbiotica 8168013 YP_003040377.1 CDS menC NC_012962.1 1767719 1768690 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 1767719..1768690 Photorhabdus asymbiotica 8168983 YP_003040378.1 CDS menE NC_012962.1 1768678 1770078 D O-succinylbenzoic acid--CoA ligase 1768678..1770078 Photorhabdus asymbiotica 8168984 YP_003040379.1 CDS PAU_01543 NC_012962.1 1770048 1770473 D hypothetical protein 1770048..1770473 Photorhabdus asymbiotica 8168986 YP_003040380.1 CDS PAU_01544 NC_012962.1 1770484 1770927 D hypothetical protein 1770484..1770927 Photorhabdus asymbiotica 8168014 YP_003040381.1 CDS katE NC_012962.1 1771011 1772453 R catalase; hydroperoxidase hpii(iii) complement(1771011..1772453) Photorhabdus asymbiotica 8168015 YP_003040382.1 CDS PAU_01546 NC_012962.1 1772729 1773271 D hypothetical protein 1772729..1773271 Photorhabdus asymbiotica 8165048 YP_003040383.1 CDS tyrP NC_012962.1 1773328 1774533 R tyrosine-specific transport protein complement(1773328..1774533) Photorhabdus asymbiotica 8168016 YP_003040384.1 CDS PAU_01548 NC_012962.1 1775473 1780734 D hypothetical protein 1775473..1780734 Photorhabdus asymbiotica 8168388 YP_003040385.1 CDS PAU_01549 NC_012962.1 1780734 1781240 D hypothetical protein 1780734..1781240 Photorhabdus asymbiotica 8168017 YP_003040386.1 CDS PAU_01550 NC_012962.1 1781399 1781494 D hypothetical protein 1781399..1781494 Photorhabdus asymbiotica 8168018 YP_003040387.1 CDS PAU_01551 NC_012962.1 1781616 1782614 R oxidoreductase, gfo/idh/moca family, putative complement(1781616..1782614) Photorhabdus asymbiotica 8168019 YP_003040388.1 CDS PAU_01552 NC_012962.1 1782679 1782786 R hypothetical protein complement(1782679..1782786) Photorhabdus asymbiotica 8168020 YP_003040389.1 CDS PAU_01553 NC_012962.1 1782793 1783008 R hypothetical protein complement(1782793..1783008) Photorhabdus asymbiotica 8168021 YP_003040390.1 CDS yfaE NC_012962.1 1783085 1783351 R ferredoxin-like protein complement(1783085..1783351) Photorhabdus asymbiotica 8168022 YP_003040391.1 CDS nrdB NC_012962.1 1783351 1784481 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(1783351..1784481) Photorhabdus asymbiotica 8165478 YP_003040392.1 CDS nrdA NC_012962.1 1784494 1786785 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1784494..1786785) Photorhabdus asymbiotica 8166932 YP_003040393.1 CDS ubiG NC_012962.1 1787151 1787873 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(1787151..1787873) Photorhabdus asymbiotica 8166931 YP_003040394.1 CDS gyrA NC_012962.1 1788031 1790670 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1788031..1790670 Photorhabdus asymbiotica 8168399 YP_003040395.1 CDS rcsC NC_012962.1 1790947 1793778 D hybrid sensory kinase in two-component regulatory system with RcsB and YojN 1790947..1793778 Photorhabdus asymbiotica 8169273 YP_003040396.1 CDS rcsB NC_012962.1 1793928 1794581 R two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB complement(1793928..1794581) Photorhabdus asymbiotica 8165147 YP_003040397.1 CDS yojN NC_012962.1 1794585 1797275 R phosphotransfer intermediate protein in two-component regulatory system with RcsBC complement(1794585..1797275) Photorhabdus asymbiotica 8165146 YP_003040398.1 CDS PAU_01562 NC_012962.1 <1797279 1797389 D hypothetical protein <1797279..1797389 Photorhabdus asymbiotica 8165014 YP_003040399.1 CDS PAU_01563 NC_012962.1 1798113 1798493 R hypothetical protein complement(1798113..1798493) Photorhabdus asymbiotica 8166963 YP_003040400.1 CDS PAU_01564 NC_012962.1 1799830 1799955 D hypothetical protein 1799830..1799955 Photorhabdus asymbiotica 8166964 YP_003040401.1 CDS Q NC_012962.1 1800227 1800646 D Phage antitermination protein q 1800227..1800646 Photorhabdus asymbiotica 8168025 YP_003040402.1 CDS PAU_01566 NC_012962.1 1801033 1801593 D putative bacteriophage protein 1801033..1801593 Photorhabdus asymbiotica 8165130 YP_003040403.1 CDS PAU_01567 NC_012962.1 1801597 1803063 D hypothetical protein 1801597..1803063 Photorhabdus asymbiotica 8168026 YP_003040404.1 CDS PAU_01568 NC_012962.1 1803073 1803513 D putative bacteriophage protein 1803073..1803513 Photorhabdus asymbiotica 8168027 YP_003040405.1 CDS PAU_01569 NC_012962.1 1803626 1804036 D putative bacteriophage protein 1803626..1804036 Photorhabdus asymbiotica 8166803 YP_003040406.1 CDS PAU_01570 NC_012962.1 1804229 1806016 D putative bacteriophage protein 1804229..1806016 Photorhabdus asymbiotica 8166804 YP_003040407.1 CDS PAU_01571 NC_012962.1 1806019 1806624 D putative bacteriophage protein 1806019..1806624 Photorhabdus asymbiotica 8166805 YP_003040408.1 CDS PAU_01572 NC_012962.1 1806609 1806914 D hypothetical protein 1806609..1806914 Photorhabdus asymbiotica 8166806 YP_003040409.1 CDS PAU_01573 NC_012962.1 1806977 1807930 D putative bacteriophage protein 1806977..1807930 Photorhabdus asymbiotica 8166807 YP_003040410.1 CDS PAU_01574 NC_012962.1 1807930 1808685 D putative bacteriophage protein 1807930..1808685 Photorhabdus asymbiotica 8166808 YP_003040411.1 CDS PAU_01575 NC_012962.1 1808682 1809029 D putative bacteriophage protein 1808682..1809029 Photorhabdus asymbiotica 8166809 YP_003040412.1 CDS PAU_01576 NC_012962.1 1809022 1810215 D putative bacteriophage protein 1809022..1810215 Photorhabdus asymbiotica 8166810 YP_003040413.1 CDS PAU_01577 NC_012962.1 1810224 1810784 D putative bacteriophage protein 1810224..1810784 Photorhabdus asymbiotica 8166811 YP_003040414.1 CDS PAU_01578 NC_012962.1 1810787 1812109 D putative phage tail fiber protein 1810787..1812109 Photorhabdus asymbiotica 8166812 YP_003040415.1 CDS wabK NC_012962.1 1812155 1813294 R putative glycosyltransferase complement(1812155..1813294) Photorhabdus asymbiotica 8166813 YP_003040416.1 CDS waaX NC_012962.1 1813329 1814084 R putative beta1,4-galactosyltransferase waax complement(1813329..1814084) Photorhabdus asymbiotica 8168457 YP_003040417.1 CDS PAU_01581 NC_012962.1 1815212 1815334 D hypothetical protein 1815212..1815334 Photorhabdus asymbiotica 8168455 YP_003040418.1 CDS PAU_01582 NC_012962.1 1815384 1815809 R phage tail fiber assembly protein complement(1815384..1815809) Photorhabdus asymbiotica 8166814 YP_003040419.1 CDS PAU_01583 NC_012962.1 1815812 >1815961 R putative tail fiber protein complement(1815812..>1815961) Photorhabdus asymbiotica 8166815 YP_003040420.1 CDS PAU_01584 NC_012962.1 1816028 1816243 R putative phage tail protein complement(1816028..1816243) Photorhabdus asymbiotica 8166816 YP_003040421.1 CDS PAU_01585 NC_012962.1 1816375 1817472 R putative LPS biosynthesis enzyme (lipopolysaccharide core biosynthesi protein rfaq) complement(1816375..1817472) Photorhabdus asymbiotica 8166817 YP_003040422.1 CDS PAU_01586 NC_012962.1 1817618 1817743 D putative tail fiber protein of prophage cp-933x (tail fiber assembl protein) 1817618..1817743 Photorhabdus asymbiotica 8166818 YP_003040423.1 CDS PAU_01587 NC_012962.1 1818663 1820081 D hypothetical protein 1818663..1820081 Photorhabdus asymbiotica 8166819 YP_003040424.1 CDS PAU_01588 NC_012962.1 1820457 1820717 D hypothetical protein 1820457..1820717 Photorhabdus asymbiotica 8166820 YP_003040425.1 CDS PAU_01589 NC_012962.1 1820728 1821423 D hypothetical protein 1820728..1821423 Photorhabdus asymbiotica 8166821 YP_003040426.1 CDS PAU_01590 NC_012962.1 1821618 1822244 R putative tail fiber protein of prophage cp-933x (tail fiber assembl protein) complement(1821618..1822244) Photorhabdus asymbiotica 8166822 YP_003040427.1 CDS PAU_01591 NC_012962.1 1822244 1822981 R putative bacteriophage tail fiber protein complement(1822244..1822981) Photorhabdus asymbiotica 8166823 YP_003040428.1 CDS PAU_01592 NC_012962.1 1823405 1823683 D prophage protein gp48 1823405..1823683 Photorhabdus asymbiotica 8166824 YP_003040429.1 CDS ycfB NC_012962.1 1823732 1824160 D hypothetical protein 1823732..1824160 Photorhabdus asymbiotica 8166825 YP_003040430.1 CDS PAU_01594 NC_012962.1 1824901 1825191 D hypothetical protein 1824901..1825191 Photorhabdus asymbiotica 8166628 YP_003040431.1 CDS PAU_01595 NC_012962.1 1825192 1825326 D hypothetical protein 1825192..1825326 Photorhabdus asymbiotica 8166826 YP_003040432.1 CDS DKFZp469A1918 NC_012962.1 1825348 1826043 D hypothetical protein 1825348..1826043 Photorhabdus asymbiotica 8166827 YP_003040433.1 CDS PAU_01597 NC_012962.1 1826144 1826716 R hypothetical protein complement(1826144..1826716) Photorhabdus asymbiotica 8168625 YP_003040434.1 CDS PAU_01598 NC_012962.1 1827115 1828629 R trypsin domain protein complement(1827115..1828629) Photorhabdus asymbiotica 8166828 YP_003040435.1 CDS dmsD NC_012962.1 1829190 1829786 R twin-arginine leader-binding protein dmsd complement(1829190..1829786) Photorhabdus asymbiotica 8166829 YP_003040436.1 CDS PAU_01600 NC_012962.1 1830223 1830333 R hypothetical protein complement(1830223..1830333) Photorhabdus asymbiotica 8168630 YP_003040437.1 CDS cbiA NC_012962.1 1830659 1832041 D responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1830659..1832041 Photorhabdus asymbiotica 8166830 YP_003040438.1 CDS cobD NC_012962.1 1832038 1832997 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1832038..1832997 Photorhabdus asymbiotica 8168532 YP_003040439.1 CDS cbiC NC_012962.1 1833012 1833644 D catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase 1833012..1833644 Photorhabdus asymbiotica 8168591 YP_003040440.1 CDS cbiD NC_012962.1 1833641 1834777 D Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 1833641..1834777 Photorhabdus asymbiotica 8168533 YP_003040441.1 CDS cbiE NC_012962.1 1834774 1835376 D catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase 1834774..1835376 Photorhabdus asymbiotica 8168534 YP_003040442.1 CDS cbiT NC_012962.1 1835366 1835935 D catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase 1835366..1835935 Photorhabdus asymbiotica 8168535 YP_003040443.1 CDS cbiF NC_012962.1 1835925 1836701 D precorrin-4 c11-methyltransferase (precorrin-3-methylase) 1835925..1836701 Photorhabdus asymbiotica 8168542 YP_003040444.1 CDS cbiG NC_012962.1 1836682 1837743 D catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 1836682..1837743 Photorhabdus asymbiotica 8168536 YP_003040445.1 CDS cbiH NC_012962.1 1837737 1838462 D precorrin-3b c17-methyltransferase (precorrin-3 methyltransferase (precorrin-3 methylase) 1837737..1838462 Photorhabdus asymbiotica 8168537 YP_003040446.1 CDS cbiJ NC_012962.1 1838459 1839256 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 1838459..1839256 Photorhabdus asymbiotica 8168538 YP_003040447.1 CDS cbiK NC_012962.1 1839258 1840052 D sirohydrochlorin cobaltochelatase 1839258..1840052 Photorhabdus asymbiotica 8168539 YP_003040448.1 CDS cbiL NC_012962.1 1840052 1840765 D catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 1840052..1840765 Photorhabdus asymbiotica 8168540 YP_003040449.1 CDS cobQ NC_012962.1 1840784 1842322 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1840784..1842322 Photorhabdus asymbiotica 8168541 YP_003040450.1 CDS cobU NC_012962.1 1842319 1842864 D catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 1842319..1842864 Photorhabdus asymbiotica 8168593 YP_003040451.1 CDS cobS NC_012962.1 1842861 1843607 D catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1842861..1843607 Photorhabdus asymbiotica 8168596 YP_003040452.1 CDS PAU_01616 NC_012962.1 1843654 1843959 R hypothetical protein complement(1843654..1843959) Photorhabdus asymbiotica 8168594 YP_003040453.1 CDS cobC NC_012962.1 1844491 1845108 D alpha-ribazole-5'-phosphate phosphatase 1844491..1845108 Photorhabdus asymbiotica 8166831 YP_003040454.1 CDS cobT NC_012962.1 1845113 1846162 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1845113..1846162 Photorhabdus asymbiotica 8168590 YP_003040455.1 CDS PAU_01619 NC_012962.1 1846273 1846575 R hypothetical protein complement(1846273..1846575) Photorhabdus asymbiotica 8168595 YP_003040456.1 CDS PAU_01620 NC_012962.1 1846574 1846876 D hypothetical protein 1846574..1846876 Photorhabdus asymbiotica 8166832 YP_003040457.1 CDS PAU_01621 NC_012962.1 1847287 1847766 D Virulence protein Hcp1 from Pseudomonas aeruginosa. Hcp1 appears to be part of a protein secretion apparatus that is required for virulence.; #Hcp1 family type VI secretion system effector 1847287..1847766 Photorhabdus asymbiotica 8166833 YP_003040458.1 CDS PAU_01622 NC_012962.1 1847774 1848559 D hypothetical protein 1847774..1848559 Photorhabdus asymbiotica 8166834 YP_003040459.1 CDS PAU_01623 NC_012962.1 1848547 1848951 R hypothetical protein complement(1848547..1848951) Photorhabdus asymbiotica 8166835 YP_003040460.1 CDS PAU_01624 NC_012962.1 1849011 1849412 R hypothetical protein complement(1849011..1849412) Photorhabdus asymbiotica 8166836 YP_003040461.1 CDS PAU_01625 NC_012962.1 1849477 1849878 R hypothetical protein complement(1849477..1849878) Photorhabdus asymbiotica 8166837 YP_003040462.1 CDS mcoln1 NC_012962.1 1849895 1850344 R hypothetical protein complement(1849895..1850344) Photorhabdus asymbiotica 8166838 YP_003040463.1 CDS PAU_01627 NC_012962.1 1850400 1850819 R hypothetical protein complement(1850400..1850819) Photorhabdus asymbiotica 8168973 YP_003040464.1 CDS LytE NC_012962.1 1851766 1852407 D hypothetical protein 1851766..1852407 Photorhabdus asymbiotica 8166839 YP_003040465.1 CDS PAU_01629 NC_012962.1 1852728 1853375 D hypothetical protein 1852728..1853375 Photorhabdus asymbiotica 8168944 YP_003040466.1 CDS PAU_01630 NC_012962.1 1853444 1853818 R hypothetical protein complement(1853444..1853818) Photorhabdus asymbiotica 8166840 YP_003040467.1 CDS eutC NC_012962.1 1854074 1854928 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(1854074..1854928) Photorhabdus asymbiotica 8166841 YP_003040468.1 CDS eutB NC_012962.1 1854951 1856312 R ethanolamine ammonia-lyase heavy chain complement(1854951..1856312) Photorhabdus asymbiotica 8166483 YP_003040469.1 CDS eutA NC_012962.1 1856324 1857736 R ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase complement(1856324..1857736) Photorhabdus asymbiotica 8166482 YP_003040470.1 CDS cysG NC_012962.1 1858037 1858822 D siroheme synthase 1858037..1858822 Photorhabdus asymbiotica 8168843 YP_003040471.1 CDS cobD NC_012962.1 1858856 1859929 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1858856..1859929 Photorhabdus asymbiotica 8169131 YP_003040472.1 CDS pduX NC_012962.1 1859877 1860782 D hypothetical protein 1859877..1860782 Photorhabdus asymbiotica 8168592 YP_003040473.1 CDS cysG NC_012962.1 1860800 1861501 D siroheme synthase [includes: uroporphyrinogen-iii c-methyltransferase 1860800..1861501 Photorhabdus asymbiotica 8168688 YP_003040474.1 CDS btuR NC_012962.1 1861502 1862080 D cob(i)alamin adenolsyltransferase 1861502..1862080 Photorhabdus asymbiotica 8169132 YP_003040475.1 CDS PAU_01639 NC_012962.1 1862142 1862468 R hypothetical protein complement(1862142..1862468) Photorhabdus asymbiotica 8168524 YP_003040476.1 CDS PAU_01640 NC_012962.1 1862547 1862972 R hypothetical protein complement(1862547..1862972) Photorhabdus asymbiotica 8166842 YP_003040477.1 CDS PAU_01641 NC_012962.1 1863548 1864186 D Surface-exposed bacterial proteins, similar to YadA, an adhesin from Yersinia; putative adhesin 1863548..1864186 Photorhabdus asymbiotica 8166843 YP_003040478.1 CDS PAU_01642 NC_012962.1 1864351 1864458 D hypothetical protein 1864351..1864458 Photorhabdus asymbiotica 8166844 YP_003040479.1 CDS PAU_01643 NC_012962.1 1864596 1864715 D hypothetical protein 1864596..1864715 Photorhabdus asymbiotica 8166845 YP_003040480.1 CDS PAU_01644 NC_012962.1 1864764 1865102 D hypothetical protein 1864764..1865102 Photorhabdus asymbiotica 8166846 YP_003040481.1 CDS PAU_01645 NC_012962.1 1865507 1866721 D bacteriophage tail fiber protein 1865507..1866721 Photorhabdus asymbiotica 8166847 YP_003040482.1 CDS tfa NC_012962.1 1866726 1867277 D putative tail fiber protein of prophage cp-933x (tail fiber assembl protein) 1866726..1867277 Photorhabdus asymbiotica 8166848 YP_003040483.1 CDS PAU_01647 NC_012962.1 1867630 1869045 D putative tail fiber protein of prophage cp-933x (tail fiber assembl protein) 1867630..1869045 Photorhabdus asymbiotica 8167492 YP_003040484.1 CDS PAU_01648 NC_012962.1 1869371 1870468 D putative tail fiber protein 1869371..1870468 Photorhabdus asymbiotica 8166849 YP_003040485.1 CDS PAU_01649 NC_012962.1 1870817 1871587 D putative tail fiber protein 1870817..1871587 Photorhabdus asymbiotica 8166850 YP_003040486.1 CDS PAU_01650 NC_012962.1 1871956 1872543 D bacteriophage tail fiber protein 1871956..1872543 Photorhabdus asymbiotica 8166851 YP_003040487.1 CDS PAU_01651 NC_012962.1 1873066 1874121 D putative tail fiber protein 1873066..1874121 Photorhabdus asymbiotica 8166852 YP_003040488.1 CDS PAU_01652 NC_012962.1 1874372 1875253 D putative tail fiber protein 1874372..1875253 Photorhabdus asymbiotica 8166853 YP_003040489.1 CDS stfE NC_012962.1 1875863 1876363 D side tail fiber protein homolog from lambdoid prophage e14 (fragment) 1875863..1876363 Photorhabdus asymbiotica 8166854 YP_003040490.1 CDS PAU_01654 NC_012962.1 1876363 1876989 D putative tail fiber protein of prophage cp-933x (tail fiber assembl protein) 1876363..1876989 Photorhabdus asymbiotica 8167685 YP_003040491.1 CDS PAU_01655 NC_012962.1 1877328 1877447 D hypothetical protein 1877328..1877447 Photorhabdus asymbiotica 8166855 YP_003040492.1 CDS PAU_01656 NC_012962.1 1877716 1878597 D putative tail fiber protein 1877716..1878597 Photorhabdus asymbiotica 8166856 YP_003040493.1 CDS PAU_01657 NC_012962.1 1879065 1879946 D putative tail fiber protein 1879065..1879946 Photorhabdus asymbiotica 8166857 YP_003040494.1 CDS PAU_01658 NC_012962.1 1880713 1881669 D putative tail fiber protein 1880713..1881669 Photorhabdus asymbiotica 8166858 YP_003040495.1 CDS insI NC_012962.1 1881635 1881979 R transposase insI for insertion sequence element IS30b/c/d complement(1881635..1881979) Photorhabdus asymbiotica 8166859 YP_003040496.1 CDS ISPlu1B NC_012962.1 1882045 1882602 R transposase, IS30 family complement(1882045..1882602) Photorhabdus asymbiotica 8168999 YP_003040497.1 CDS waaX NC_012962.1 1882763 1883548 R hypothetical protein complement(1882763..1883548) Photorhabdus asymbiotica 8165037 YP_003040498.1 CDS yejM NC_012962.1 1884236 1885975 R putative inner membrane protein yejm complement(1884236..1885975) Photorhabdus asymbiotica 8166965 YP_003040499.1 CDS yejL NC_012962.1 1886008 1886235 R hypothetical protein complement(1886008..1886235) Photorhabdus asymbiotica 8165474 YP_003040500.1 CDS ndpA NC_012962.1 1886508 1887512 D nucleoid-associated protein NdpA 1886508..1887512 Photorhabdus asymbiotica 8165473 YP_003040501.1 CDS rplY NC_012962.1 1887584 1887868 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(1887584..1887868) Photorhabdus asymbiotica 8166914 YP_003040502.1 CDS yejH NC_012962.1 1888025 1889782 R hypothetical protein complement(1888025..1889782) Photorhabdus asymbiotica 8164918 YP_003040503.1 CDS PAU_01667 NC_012962.1 1890037 1890165 D hypothetical protein 1890037..1890165 Photorhabdus asymbiotica 8165472 YP_003040504.1 CDS rsuA NC_012962.1 1890183 1890884 D catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A 1890183..1890884 Photorhabdus asymbiotica 8166860 YP_003040505.1 CDS bcr NC_012962.1 1890928 1892115 D Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system 1890928..1892115 Photorhabdus asymbiotica 8167157 YP_003040506.1 CDS PAU_01670 NC_012962.1 1892214 1892357 D hypothetical protein 1892214..1892357 Photorhabdus asymbiotica 8165553 YP_003040507.1 CDS yejG NC_012962.1 1893047 1893391 D hypothetical protein 1893047..1893391 Photorhabdus asymbiotica 8166861 YP_003040508.1 CDS spr NC_012962.1 1893475 1894065 R by similarity, Spr seems to have peptidase activity; involved in thermoresistance; putative outer membrane lipoprotein complement(1893475..1894065) Photorhabdus asymbiotica 8165471 YP_003040509.1 CDS PAU_01673 NC_012962.1 1894425 1895129 R hypothetical protein complement(1894425..1895129) Photorhabdus asymbiotica 8167675 YP_003040510.1 CDS PAU_01674 NC_012962.1 1895568 1895879 D hypothetical protein 1895568..1895879 Photorhabdus asymbiotica 8166862 YP_003040511.1 CDS yeiP NC_012962.1 1896248 1896820 R Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P complement(1896248..1896820) Photorhabdus asymbiotica 8166863 YP_003040512.1 CDS mtr NC_012962.1 1896959 1898218 R tryptophan-specific transport protein complement(1896959..1898218) Photorhabdus asymbiotica 8165470 YP_003040513.1 CDS PAU_01677 NC_012962.1 1898336 1898755 R hypothetical protein complement(1898336..1898755) Photorhabdus asymbiotica 8166393 YP_003040514.1 CDS fruK NC_012962.1 1898973 1899911 D converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase 1898973..1899911 Photorhabdus asymbiotica 8166864 YP_003040515.1 CDS nfo NC_012962.1 1899931 1900773 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(1899931..1900773) Photorhabdus asymbiotica 8168157 YP_003040516.1 CDS yeiH NC_012962.1 1900884 1901966 R upf0324 membrane protein plu2856 complement(1900884..1901966) Photorhabdus asymbiotica 8166916 YP_003040517.1 CDS yeiE NC_012962.1 1902160 1903023 D putative DNA-binding transcriptional regulator 1902160..1903023 Photorhabdus asymbiotica 8165468 YP_003040518.1 CDS lysP NC_012962.1 1903183 1904661 D lysine transporter 1903183..1904661 Photorhabdus asymbiotica 8165467 YP_003040519.1 CDS PAU_01683 NC_012962.1 <1904996 1906120 D iron(III) ABC transporter <1904996..1906120 Photorhabdus asymbiotica 8168942 YP_003040520.1 CDS PAU_01684 NC_012962.1 1906243 1907229 D hemin/siderophore ABC transporter 1906243..1907229 Photorhabdus asymbiotica 8166865 YP_003040521.1 CDS fepC NC_012962.1 1907226 1908014 D hemin/siderophore ABC transporter ATP-binding protein 1907226..1908014 Photorhabdus asymbiotica 8166866 YP_003040522.1 CDS PAU_01686 NC_012962.1 1908007 1908108 R hypothetical protein complement(1908007..1908108) Photorhabdus asymbiotica 8166531 YP_003040523.1 CDS PAU_01687 NC_012962.1 1908466 1910451 D YiuR; outer membrane siderophore receptor; putative outer membrane receptor 1908466..1910451 Photorhabdus asymbiotica 8166867 YP_003040524.1 CDS yeeF NC_012962.1 1911132 1912514 D putative amino acid/amine transport protein 1911132..1912514 Photorhabdus asymbiotica 8166868 YP_003040525.1 CDS PAU_01689 NC_012962.1 1912523 1912642 D hypothetical protein 1912523..1912642 Photorhabdus asymbiotica 8165455 YP_003040526.1 CDS dld NC_012962.1 1912718 1914433 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 1912718..1914433 Photorhabdus asymbiotica 8166869 YP_003040527.1 CDS sbcB NC_012962.1 1914555 1915985 R Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I complement(1914555..1915985) Photorhabdus asymbiotica 8168629 YP_003040528.1 CDS PAU_01692 NC_012962.1 1917615 1917740 D hypothetical protein 1917615..1917740 Photorhabdus asymbiotica 8167176 YP_003040529.1 CDS PAU_01693 NC_012962.1 1917747 1917854 D hypothetical protein 1917747..1917854 Photorhabdus asymbiotica 8166870 YP_003040530.1 CDS yeeX NC_012962.1 1918273 1918590 D hypothetical protein 1918273..1918590 Photorhabdus asymbiotica 8166871 YP_003040531.1 CDS PAU_01695 NC_012962.1 1918638 1919270 R hypothetical protein complement(1918638..1919270) Photorhabdus asymbiotica 8165458 YP_003040532.1 CDS rne NC_012962.1 1919433 1922513 R bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E complement(1919433..1922513) Photorhabdus asymbiotica 8166872 YP_003040533.1 CDS rluC NC_012962.1 1923073 1924032 D catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 1923073..1924032 Photorhabdus asymbiotica 8166966 YP_003040534.1 CDS yceF NC_012962.1 1924034 1924642 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1924034..1924642) Photorhabdus asymbiotica 8164867 YP_003040535.1 CDS yceD NC_012962.1 1924767 1925291 D hypothetical protein 1924767..1925291 Photorhabdus asymbiotica 8166623 YP_003040536.1 CDS rpmF NC_012962.1 1925304 1925474 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1925304..1925474 Photorhabdus asymbiotica 8166621 YP_003040537.1 CDS plsX NC_012962.1 1925505 1926542 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1925505..1926542 Photorhabdus asymbiotica 8164924 YP_003040538.1 CDS fabH NC_012962.1 1926549 1927502 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 1926549..1927502 Photorhabdus asymbiotica 8168280 YP_003040539.1 CDS fabD NC_012962.1 1927521 1928453 D malonyl coa-acyl carrier protein transacylase 1927521..1928453 Photorhabdus asymbiotica 8166496 YP_003040540.1 CDS fabG NC_012962.1 1928462 1929196 D 3-oxoacyl-[acyl-carrier-protein] reductase 1928462..1929196 Photorhabdus asymbiotica 8166491 YP_003040541.1 CDS acpP NC_012962.1 1929351 1929587 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1929351..1929587 Photorhabdus asymbiotica 8166494 YP_003040542.1 CDS fabF NC_012962.1 1929662 1930903 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1929662..1930903 Photorhabdus asymbiotica 8166735 YP_003040543.1 CDS pabC NC_012962.1 1931152 1931976 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1931152..1931976 Photorhabdus asymbiotica 8166492 YP_003040544.1 CDS yceG NC_012962.1 1932009 1933034 D hypothetical protein 1932009..1933034 Photorhabdus asymbiotica 8165633 YP_003040545.1 CDS tmk NC_012962.1 1933031 1933669 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1933031..1933669 Photorhabdus asymbiotica 8166624 YP_003040546.1 CDS holB NC_012962.1 1933669 1934652 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1933669..1934652 Photorhabdus asymbiotica 8167514 YP_003040547.1 CDS ycfH NC_012962.1 1934683 1935468 D putative metallodependent hydrolase 1934683..1935468 Photorhabdus asymbiotica 8167305 YP_003040548.1 CDS hinT NC_012962.1 1935665 1936015 D purine nucleoside phosphoramidase 1935665..1936015 Photorhabdus asymbiotica 8166630 YP_003040549.1 CDS ycfM NC_012962.1 1936314 1936886 D putative outer membrane lipoprotein 1936314..1936886 Photorhabdus asymbiotica 8169309 YP_003040550.1 CDS thiK NC_012962.1 1936873 1937736 D hypothetical protein 1936873..1937736 Photorhabdus asymbiotica 8166631 YP_003040551.1 CDS PAU_01715 NC_012962.1 1937707 1937877 R hypothetical protein complement(1937707..1937877) Photorhabdus asymbiotica 8167501 YP_003040552.1 CDS nagZ NC_012962.1 1937913 1938935 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1937913..1938935 Photorhabdus asymbiotica 8166873 YP_003040553.1 CDS ndh NC_012962.1 1939422 1940726 D respiratory nadh dehydrogenase 1939422..1940726 Photorhabdus asymbiotica 8166906 YP_003040554.1 CDS PAU_01718 NC_012962.1 1940921 1942588 R subtilisin family serine protease-like protein complement(1940921..1942588) Photorhabdus asymbiotica 8166911 YP_003040555.1 CDS yiaC NC_012962.1 1942870 1943346 R hypothetical acetyltransferase complement(1942870..1943346) Photorhabdus asymbiotica 8166874 YP_003040556.1 CDS pvcB NC_012962.1 1943541 1944386 R pyoverdine biosynthesis protein PvcB-like protein complement(1943541..1944386) Photorhabdus asymbiotica 8167616 YP_003040557.1 CDS pvcA NC_012962.1 1944399 1945376 R pyoverdine biosynthesis protein PvcA-like protein complement(1944399..1945376) Photorhabdus asymbiotica 8165113 YP_003040558.1 CDS PAU_01722 NC_012962.1 1945479 1945595 R hypothetical protein complement(1945479..1945595) Photorhabdus asymbiotica 8165112 YP_003040559.1 CDS mfd NC_012962.1 1946158 1949604 R transcription-repair coupling factor complement(1946158..1949604) Photorhabdus asymbiotica 8166875 YP_003040560.1 CDS PAU_01724 NC_012962.1 1949993 1950322 R hypothetical protein complement(1949993..1950322) Photorhabdus asymbiotica 8166321 YP_003040561.1 CDS PAU_01725 NC_012962.1 1950607 1950747 D hypothetical protein 1950607..1950747 Photorhabdus asymbiotica 8166876 YP_003040562.1 CDS lolC NC_012962.1 1950985 1952187 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1950985..1952187 Photorhabdus asymbiotica 8166877 YP_003040563.1 CDS lolD NC_012962.1 1952180 1952884 D outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 1952180..1952884 Photorhabdus asymbiotica 8165095 YP_003040564.1 CDS lolE NC_012962.1 1952884 1954131 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1952884..1954131 Photorhabdus asymbiotica 8165096 YP_003040565.1 CDS cobB NC_012962.1 1954209 1955051 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1954209..1955051 Photorhabdus asymbiotica 8165097 YP_003040566.1 CDS pepT NC_012962.1 1955107 1956369 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1955107..1956369 Photorhabdus asymbiotica 8168589 YP_003040567.1 CDS PAU_01731 NC_012962.1 1956817 1957005 R hypothetical protein complement(1956817..1957005) Photorhabdus asymbiotica 8168700 YP_003040568.1 CDS ycfD NC_012962.1 1957298 1958419 R hypothetical protein complement(1957298..1958419) Photorhabdus asymbiotica 8166878 YP_003040569.1 CDS phoQ NC_012962.1 1958503 1959966 R sensor protein PhoQ complement(1958503..1959966) Photorhabdus asymbiotica 8166629 YP_003040570.1 CDS phoP NC_012962.1 1959986 1960654 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP complement(1959986..1960654) Photorhabdus asymbiotica 8168734 YP_003040571.1 CDS purB NC_012962.1 1960898 1962268 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1960898..1962268) Photorhabdus asymbiotica 8168733 YP_003040572.1 CDS PAU_01736 NC_012962.1 1962292 1962918 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(1962292..1962918) Photorhabdus asymbiotica 8168356 YP_003040573.1 CDS mnmA NC_012962.1 1962921 1964024 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1962921..1964024) Photorhabdus asymbiotica 8166879 YP_003040574.1 CDS ymfB NC_012962.1 1964109 1964561 R hypothetical protein complement(1964109..1964561) Photorhabdus asymbiotica 8168360 YP_003040575.1 CDS rluE NC_012962.1 1964551 1965036 R pseudouridine synthase complement(1964551..1965036) Photorhabdus asymbiotica 8164996 YP_003040576.1 CDS icdA NC_012962.1 1965320 1966573 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1965320..1966573 Photorhabdus asymbiotica 8164869 YP_003040577.1 CDS PAU_01741 NC_012962.1 1966703 1967110 D hypothetical protein 1966703..1967110 Photorhabdus asymbiotica 8167348 YP_003040578.1 CDS PAU_01742 NC_012962.1 1968766 1968879 D hypothetical protein 1968766..1968879 Photorhabdus asymbiotica 8166880 YP_003040579.1 CDS PAU_01743 NC_012962.1 1968907 1969041 D hypothetical protein 1968907..1969041 Photorhabdus asymbiotica 8166881 YP_003040580.1 CDS yaaJ NC_012962.1 1969488 1970951 D inner membrane transport protein 1969488..1970951 Photorhabdus asymbiotica 8166882 YP_003040581.1 CDS ybjR NC_012962.1 1971205 1972032 D probable N-acetylmuramoyl-L-alanine amidase 1971205..1972032 Photorhabdus asymbiotica 8168511 YP_003040582.1 CDS PAU_01746 NC_012962.1 1972406 1972834 R hypothetical protein complement(1972406..1972834) Photorhabdus asymbiotica 8166600 YP_003040583.1 CDS PAU_01747 NC_012962.1 1973057 1973557 D hypothetical protein 1973057..1973557 Photorhabdus asymbiotica 8166883 YP_003040584.1 CDS yddG NC_012962.1 1973583 1974488 D hypothetical protein 1973583..1974488 Photorhabdus asymbiotica 8169000 YP_003040585.1 CDS yidA NC_012962.1 1975077 1975883 R hypothetical protein complement(1975077..1975883) Photorhabdus asymbiotica 8165423 YP_003040586.1 CDS PAU_01750 NC_012962.1 1975969 1976358 R right origin-binding protein complement(1975969..1976358) Photorhabdus asymbiotica 8164947 YP_003040587.1 CDS yobG NC_012962.1 1976765 1976935 D hypothetical protein 1976765..1976935 Photorhabdus asymbiotica 8169002 YP_003040588.1 CDS PAU_01752 NC_012962.1 1977114 1977209 D hypothetical protein 1977114..1977209 Photorhabdus asymbiotica 8165011 YP_003040589.1 CDS aroP NC_012962.1 1977231 1978610 D aromatic amino acid transport protein arop (general aromatic amin acid permease) 1977231..1978610 Photorhabdus asymbiotica 8169003 YP_003040590.1 CDS pagP NC_012962.1 1978676 1979299 R catalyzes the transfer of palmitate to lipid A; palmitoyl transferase complement(1978676..1979299) Photorhabdus asymbiotica 8165506 YP_003040591.1 CDS ERF2 NC_012962.1 1979303 1979407 R hypothetical protein complement(1979303..1979407) Photorhabdus asymbiotica 8169091 YP_003040592.1 CDS cspC NC_012962.1 1979903 1980112 D cold shock protein 1979903..1980112 Photorhabdus asymbiotica 8168682 YP_003040593.1 CDS thiD NC_012962.1 1980366 1981163 D catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 1980366..1981163 Photorhabdus asymbiotica 8166967 YP_003040594.1 CDS fbaB NC_012962.1 1981308 1982357 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase complement(1981308..1982357) Photorhabdus asymbiotica 8167496 YP_003040595.1 CDS Beta NC_012962.1 1983506 1984126 D hypothetical protein 1983506..1984126 Photorhabdus asymbiotica 8166509 YP_003040596.1 CDS PAU_01760 NC_012962.1 1984158 1984805 R hypothetical protein complement(1984158..1984805) Photorhabdus asymbiotica 8165554 YP_003040597.1 CDS cII NC_012962.1 1984823 1985110 R hypothetical protein complement(1984823..1985110) Photorhabdus asymbiotica 8169004 YP_003040598.1 CDS yegQ NC_012962.1 1986663 1988039 R putative protease complement(1986663..1988039) Photorhabdus asymbiotica 8168570 YP_003040599.1 CDS PAU_01763 NC_012962.1 1988236 1988580 R hypothetical protein complement(1988236..1988580) Photorhabdus asymbiotica 8165462 YP_003040600.1 CDS baeR NC_012962.1 1988667 1989371 R response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR complement(1988667..1989371) Photorhabdus asymbiotica 8169005 YP_003040601.1 CDS baeS NC_012962.1 1989368 1990756 R Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk. These pathways have been adapted to respond to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals and antibiotics; signal transduction histidine-protein kinase BaeS complement(1989368..1990756) Photorhabdus asymbiotica 8165546 YP_003040602.1 CDS mdtC NC_012962.1 1990753 1993839 R Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC complement(1990753..1993839) Photorhabdus asymbiotica 8165547 YP_003040603.1 CDS mdtB NC_012962.1 1993836 1996982 R Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB complement(1993836..1996982) Photorhabdus asymbiotica 8168977 YP_003040604.1 CDS mdtA NC_012962.1 1996982 1998214 R Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA complement(1996982..1998214) Photorhabdus asymbiotica 8168976 YP_003040605.1 CDS PAU_01769 NC_012962.1 1998669 1999721 D transposase, is630 family 1998669..1999721 Photorhabdus asymbiotica 8168975 YP_003040606.1 CDS rihB NC_012962.1 2000034 2000963 D pyrimidine-specific ribonucleoside hydrolase 2000034..2000963 Photorhabdus asymbiotica 8169006 YP_003040607.1 CDS PAU_01771 NC_012962.1 2001113 2001787 D adenosine deaminase (adenosine aminohydrolase) 2001113..2001787 Photorhabdus asymbiotica 8164857 YP_003040608.1 CDS PAU_01772 NC_012962.1 2001796 2002188 D adenosine deaminase (adenosine aminohydrolase) 2001796..2002188 Photorhabdus asymbiotica 8169007 YP_003040609.1 CDS PAU_01773 NC_012962.1 2002197 2002349 D hypothetical protein 2002197..2002349 Photorhabdus asymbiotica 8169008 YP_003040610.1 CDS PAU_01774 NC_012962.1 2002535 2003182 D transcription regulator 2002535..2003182 Photorhabdus asymbiotica 8169009 YP_003040611.1 CDS yfgG NC_012962.1 2003584 2003745 R hypothetical protein complement(2003584..2003745) Photorhabdus asymbiotica 8169010 YP_003040612.1 CDS ppx NC_012962.1 2003758 2005290 R exopolyphosphatase complement(2003758..2005290) Photorhabdus asymbiotica 8167539 YP_003040613.1 CDS ppk NC_012962.1 2005294 2007363 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(2005294..2007363) Photorhabdus asymbiotica 8168304 YP_003040614.1 CDS speG NC_012962.1 2007442 >2007960 R spermidine n1-acetyltransferase (diamine acetyltransferase) complement(2007442..>2007960) Photorhabdus asymbiotica 8168299 YP_003040615.1 CDS purN NC_012962.1 2008085 2008723 R phosphoribosylglycinamide formyltransferase 1 (gart) (ga transformylase) (5'-phosphoribosylglycinamide transformylase) complement(2008085..2008723) Photorhabdus asymbiotica 8167671 YP_003040616.1 CDS purM NC_012962.1 2008720 2009760 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(2008720..2009760) Photorhabdus asymbiotica 8165106 YP_003040617.1 CDS upp NC_012962.1 2009999 2010625 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2009999..2010625 Photorhabdus asymbiotica 8165105 YP_003040618.1 CDS uraA NC_012962.1 2010694 2011986 D uracil transporter 2010694..2011986 Photorhabdus asymbiotica 8168410 YP_003040619.1 CDS PAU_01783 NC_012962.1 2012105 2012218 D hypothetical protein 2012105..2012218 Photorhabdus asymbiotica 8168413 YP_003040620.1 CDS PAU_01784 NC_012962.1 2012504 2012926 R hypothetical protein complement(2012504..2012926) Photorhabdus asymbiotica 8169011 YP_003040621.1 CDS celF NC_012962.1 2013192 2014499 R 6-phospho-beta-glucosidase complement(2013192..2014499) Photorhabdus asymbiotica 8169012 YP_003040622.1 CDS celC NC_012962.1 2014496 2014819 R pts system, cellobiose-specific iia component (eiia-cel) (cellobiose permease iia component) (phosphotransferase enzyme ii, a component (eiii-cel) complement(2014496..2014819) Photorhabdus asymbiotica 8168553 YP_003040623.1 CDS celB NC_012962.1 2014835 2016163 R phosphotransferase system cellobiose-specific component iic complement(2014835..2016163) Photorhabdus asymbiotica 8168552 YP_003040624.1 CDS celA NC_012962.1 2016194 2016499 R pts system, cellobiose-specific iib component complement(2016194..2016499) Photorhabdus asymbiotica 8168551 YP_003040625.1 CDS hda NC_012962.1 2017085 2017819 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2017085..2017819 Photorhabdus asymbiotica 8168550 YP_003040626.1 CDS PAU_01790 NC_012962.1 2017858 2018214 R arsenate reductase complement(2017858..2018214) Photorhabdus asymbiotica 8169285 YP_003040627.1 CDS yfgC NC_012962.1 2018224 2019687 R hypothetical protein complement(2018224..2019687) Photorhabdus asymbiotica 8169013 YP_003040628.1 CDS perM NC_012962.1 2019826 2020905 D putative permease perm 2019826..2020905 Photorhabdus asymbiotica 8167538 YP_003040629.1 CDS bcp NC_012962.1 2021060 2021533 R bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase complement(2021060..2021533) Photorhabdus asymbiotica 8168701 YP_003040630.1 CDS gcvR NC_012962.1 2021557 2022102 R negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor complement(2021557..2022102) Photorhabdus asymbiotica 8165551 YP_003040631.1 CDS PAU_01795 NC_012962.1 2022216 2022404 R hypothetical protein complement(2022216..2022404) Photorhabdus asymbiotica 8165736 YP_003040632.1 CDS dapA NC_012962.1 2022484 2023383 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2022484..2023383 Photorhabdus asymbiotica 8169014 YP_003040633.1 CDS nlpB NC_012962.1 2023400 2024449 D lipoprotein 2023400..2024449 Photorhabdus asymbiotica 8169157 YP_003040634.1 CDS purC NC_012962.1 2024542 2025255 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2024542..2025255 Photorhabdus asymbiotica 8166924 YP_003040635.1 CDS PAU_01799 NC_012962.1 2026016 2027743 D lipid A export ATP-binding/permease protein 2026016..2027743 Photorhabdus asymbiotica 8168357 YP_003040636.1 CDS PAU_01800 NC_012962.1 2027740 2029383 D ABC transporter protein 2027740..2029383 Photorhabdus asymbiotica 8169015 YP_003040637.1 CDS PAU_01801 NC_012962.1 2029657 2029857 D hypothetical protein 2029657..2029857 Photorhabdus asymbiotica 8169016 YP_003040638.1 CDS PAU_01802 NC_012962.1 2030237 2031409 D hypothetical protein 2030237..2031409 Photorhabdus asymbiotica 8169017 YP_003040639.1 CDS entB NC_012962.1 2031427 2031654 R hypothetical protein complement(2031427..2031654) Photorhabdus asymbiotica 8169018 YP_003040640.1 CDS PAU_01804 NC_012962.1 2031687 2032916 R putative ABC transporter complement(2031687..2032916) Photorhabdus asymbiotica 8168677 YP_003040641.1 CDS PAU_01805 NC_012962.1 2032916 2033578 R putative abc transporter complement(2032916..2033578) Photorhabdus asymbiotica 8169019 YP_003040642.1 CDS PAU_01806 NC_012962.1 2033562 2034716 R membrane fusion protein complement(2033562..2034716) Photorhabdus asymbiotica 8169020 YP_003040643.1 CDS pvdD/pvdJ NC_012962.1 2034765 2039132 R similar to proteins involved in antibiotics biosynthesis complement(2034765..2039132) Photorhabdus asymbiotica 8169021 YP_003040644.1 CDS PAU_01808 NC_012962.1 2039150 2039644 R hypothetical protein complement(2039150..2039644) Photorhabdus asymbiotica 8165114 YP_003040645.1 CDS PAU_01809 NC_012962.1 2039641 2040651 R hypothetical protein complement(2039641..2040651) Photorhabdus asymbiotica 8169022 YP_003040646.1 CDS PAU_01810 NC_012962.1 2041305 2042300 R hypothetical protein complement(2041305..2042300) Photorhabdus asymbiotica 8169023 YP_003040647.1 CDS PAU_01811 NC_012962.1 2042311 2043372 R hypothetical protein complement(2042311..2043372) Photorhabdus asymbiotica 8169024 YP_003040648.1 CDS PAU_01812 NC_012962.1 2044077 2044169 D hypothetical protein 2044077..2044169 Photorhabdus asymbiotica 8169025 YP_003040649.1 CDS yeaL NC_012962.1 2044219 2044734 D hypothetical protein 2044219..2044734 Photorhabdus asymbiotica 8169026 YP_003040650.1 CDS ypfI NC_012962.1 2044740 2046788 D putative acyltransferase 2044740..2046788 Photorhabdus asymbiotica 8165444 YP_003040651.1 CDS ypfN NC_012962.1 2046739 2046927 R hypothetical protein complement(2046739..2046927) Photorhabdus asymbiotica 8165017 YP_003040652.1 CDS vanY NC_012962.1 2046915 2047604 R hypothetical protein complement(2046915..2047604) Photorhabdus asymbiotica 8165018 YP_003040653.1 CDS dapE NC_012962.1 2047601 2048728 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2047601..2048728) Photorhabdus asymbiotica 8168442 YP_003040654.1 CDS PAU_01818 NC_012962.1 2048730 2049113 R hypothetical protein complement(2048730..2049113) Photorhabdus asymbiotica 8169160 YP_003040655.1 CDS narP NC_012962.1 2049321 2049956 R nitrate/nitrite response regulator protein narp complement(2049321..2049956) Photorhabdus asymbiotica 8169027 YP_003040656.1 CDS maeB NC_012962.1 2050543 2052822 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 2050543..2052822 Photorhabdus asymbiotica 8166907 YP_003040657.1 CDS cjrA NC_012962.1 2052911 2053822 D hypothetical protein 2052911..2053822 Photorhabdus asymbiotica 8168948 YP_003040658.1 CDS PAU_01822 NC_012962.1 2053975 2054775 D hypothetical protein 2053975..2054775 Photorhabdus asymbiotica 8168578 YP_003040659.1 CDS ptrB NC_012962.1 2054906 2056963 D protease ii (oligopeptidase b) 2054906..2056963 Photorhabdus asymbiotica 8169028 YP_003040660.1 CDS cjrC NC_012962.1 2057095 2059374 D outer membrane siderophore receptor 2057095..2059374 Photorhabdus asymbiotica 8168347 YP_003040661.1 CDS xseA NC_012962.1 2059406 2060779 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(2059406..2060779) Photorhabdus asymbiotica 8168579 YP_003040662.1 CDS guaB NC_012962.1 2060865 2062418 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2060865..2062418 Photorhabdus asymbiotica 8168507 YP_003040663.1 CDS guaA NC_012962.1 2062496 2064073 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2062496..2064073 Photorhabdus asymbiotica 8169272 YP_003040664.1 CDS PAU_01828 NC_012962.1 2064224 2064454 D hypothetical protein 2064224..2064454 Photorhabdus asymbiotica 8169271 YP_003040665.1 CDS PAU_01829 NC_012962.1 2064746 2065012 D hypothetical protein 2064746..2065012 Photorhabdus asymbiotica 8169029 YP_003040666.1 CDS PAU_01830 NC_012962.1 2065121 2065513 R hypothetical protein complement(2065121..2065513) Photorhabdus asymbiotica 8169030 YP_003040667.1 CDS PAU_01831 NC_012962.1 2065473 2065664 R hypothetical protein complement(2065473..2065664) Photorhabdus asymbiotica 8169031 YP_003040668.1 CDS rrmA NC_012962.1 2065941 2066945 D methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 2065941..2066945 Photorhabdus asymbiotica 8169032 YP_003040669.1 CDS yebN NC_012962.1 2067003 2067584 R upf0059 inner membrane protein plu2701 complement(2067003..2067584) Photorhabdus asymbiotica 8167148 YP_003040670.1 CDS yobD NC_012962.1 2067942 2068400 R hypothetical protein complement(2067942..2068400) Photorhabdus asymbiotica 8166968 YP_003040671.1 CDS manZ NC_012962.1 2068604 2069470 R hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID complement(2068604..2069470) Photorhabdus asymbiotica 8165010 YP_003040672.1 CDS manY NC_012962.1 2069483 2070286 R pts system, mannose-specific iic component (eiic-man) (mannose permease iic component) (phosphotransferase enzyme ii, c component (eii-p-man) complement(2069483..2070286) Photorhabdus asymbiotica 8168961 YP_003040673.1 CDS manX NC_012962.1 2070361 2071329 R pts system, mannose-specific iiab component (eiiab-man) (mannose permease iiab component) (phosphotransferase enzyme ii, ab component (eiii-man) complement(2070361..2071329) Photorhabdus asymbiotica 8168960 YP_003040674.1 CDS PAU_01838 NC_012962.1 2071657 2071788 R hypothetical protein complement(2071657..2071788) Photorhabdus asymbiotica 8168959 YP_003040675.1 CDS sdaA NC_012962.1 2071828 2073192 R L-serine dehydratase 1 complement(2071828..2073192) Photorhabdus asymbiotica 8169033 YP_003040676.1 CDS nudL NC_012962.1 2073363 2073926 R hypothetical protein complement(2073363..2073926) Photorhabdus asymbiotica 8167619 YP_003040677.1 CDS pabB NC_012962.1 2073923 2075371 R para-aminobenzoate synthase component I complement(2073923..2075371) Photorhabdus asymbiotica 8166943 YP_003040678.1 CDS yoaH NC_012962.1 2075401 2075607 D hypothetical protein 2075401..2075607 Photorhabdus asymbiotica 8165632 YP_003040679.1 CDS yebF NC_012962.1 2075721 2076095 D secreted protein; unknown function; hypothetical protein 2075721..2076095 Photorhabdus asymbiotica 8165009 YP_003040680.1 CDS pip NC_012962.1 2076168 2077121 D proline iminopeptidase 2076168..2077121 Photorhabdus asymbiotica 8165447 YP_003040681.1 CDS holE NC_012962.1 2077171 2077401 R DNA polymerase III subunit theta complement(2077171..2077401) Photorhabdus asymbiotica 8168753 YP_003040682.1 CDS PAU_01846 NC_012962.1 2077447 2077572 R hypothetical protein complement(2077447..2077572) Photorhabdus asymbiotica 8167308 YP_003040683.1 CDS ftnA NC_012962.1 2077713 2078231 D ferritin-1 2077713..2078231 Photorhabdus asymbiotica 8169034 YP_003040684.1 CDS PAU_01848 NC_012962.1 2078426 2078812 D hypothetical protein 2078426..2078812 Photorhabdus asymbiotica 8168160 YP_003040685.1 CDS PAU_01849 NC_012962.1 2078815 2079708 D putative copper transporter 2078815..2079708 Photorhabdus asymbiotica 8169035 YP_003040686.1 CDS PAU_01850 NC_012962.1 2079760 2080215 D hypothetical protein 2079760..2080215 Photorhabdus asymbiotica 8169036 YP_003040687.1 CDS PAU_01851 NC_012962.1 2080466 2080708 R hypothetical protein complement(2080466..2080708) Photorhabdus asymbiotica 8169037 YP_003040688.1 CDS PAU_01852 NC_012962.1 2081332 2081829 D hypothetical protein 2081332..2081829 Photorhabdus asymbiotica 8169038 YP_003040689.1 CDS proQ NC_012962.1 2081925 2082629 D affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2081925..2082629 Photorhabdus asymbiotica 8169039 YP_003040690.1 CDS prc NC_012962.1 2082649 2084700 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2082649..2084700 Photorhabdus asymbiotica 8168317 YP_003040691.1 CDS htpX NC_012962.1 2085035 2085922 D putative metalloprotease; heat shock protein HtpX 2085035..2085922 Photorhabdus asymbiotica 8168308 YP_003040692.1 CDS ydjN NC_012962.1 2085976 2087367 R proton/sodium-glutamate symport protein complement(2085976..2087367) Photorhabdus asymbiotica 8167337 YP_003040693.1 CDS PAU_01857 NC_012962.1 2087554 2088102 R hypothetical protein complement(2087554..2088102) Photorhabdus asymbiotica 8165440 YP_003040694.1 CDS PAU_01858 NC_012962.1 2089077 2089424 D bacteriophage tail fiber protein 2089077..2089424 Photorhabdus asymbiotica 8169040 YP_003040695.1 CDS yniB NC_012962.1 2089775 2090314 D hypothetical protein 2089775..2090314 Photorhabdus asymbiotica 8169041 YP_003040696.1 CDS yniA NC_012962.1 2090374 2091243 R hypothetical protein complement(2090374..2091243) Photorhabdus asymbiotica 8165006 YP_003040697.1 CDS yfeD NC_012962.1 2091367 2092254 R chelated iron transport system membrane protein yfed homolog complement(2091367..2092254) Photorhabdus asymbiotica 8165005 YP_003040698.1 CDS yfeC NC_012962.1 2092251 2093126 R chelated iron transport system membrane protein yfec complement(2092251..2093126) Photorhabdus asymbiotica 8167860 YP_003040699.1 CDS PAU_01863 NC_012962.1 2093123 2094019 R iron transport system atp-binding protein yfeb complement(2093123..2094019) Photorhabdus asymbiotica 8167859 YP_003040700.1 CDS PAU_01864 NC_012962.1 2094016 2094930 R iron (chelated) abc transporter, periplasmic-binding protein yfea complement(2094016..2094930) Photorhabdus asymbiotica 8169042 YP_003040701.1 CDS emtA NC_012962.1 2095153 2095821 D hypothetical protein 2095153..2095821 Photorhabdus asymbiotica 8169043 YP_003040702.1 CDS thrS NC_012962.1 2096236 2098164 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2096236..2098164 Photorhabdus asymbiotica 8168673 YP_003040703.1 CDS infC NC_012962.1 2098312 2098707 D translation initiation factor if-3 2098312..2098707 Photorhabdus asymbiotica 8167507 YP_003040704.1 CDS rpmI NC_012962.1 2098806 2099003 D 50S ribosomal protein L35 2098806..2099003 Photorhabdus asymbiotica 8167371 YP_003040705.1 CDS rplT NC_012962.1 2099046 2099402 D 50s ribosomal protein l20 2099046..2099402 Photorhabdus asymbiotica 8164926 YP_003040706.1 CDS pheS NC_012962.1 2099732 2100715 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2099732..2100715 Photorhabdus asymbiotica 8164913 YP_003040707.1 CDS pheT NC_012962.1 2100730 2103117 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2100730..2103117 Photorhabdus asymbiotica 8168724 YP_003040708.1 CDS ihfA NC_012962.1 2103122 2103418 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2103122..2103418 Photorhabdus asymbiotica 8168725 YP_003040709.1 CDS btuC NC_012962.1 2103488 2104495 D with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 2103488..2104495 Photorhabdus asymbiotica 8167354 YP_003040710.1 CDS btuD NC_012962.1 2104515 2105288 D ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 2104515..2105288 Photorhabdus asymbiotica 8168521 YP_003040711.1 CDS arnB NC_012962.1 2105426 2106583 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2105426..2106583 Photorhabdus asymbiotica 8168522 YP_003040712.1 CDS arnC NC_012962.1 2106573 2107550 D catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2106573..2107550 Photorhabdus asymbiotica 8165495 YP_003040713.1 CDS arnA NC_012962.1 2107550 2109532 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2107550..2109532 Photorhabdus asymbiotica 8165496 YP_003040714.1 CDS PAU_01878 NC_012962.1 2109532 2110425 D hypothetical protein 2109532..2110425 Photorhabdus asymbiotica 8165494 YP_003040715.1 CDS arnT NC_012962.1 2110433 2112094 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2110433..2112094 Photorhabdus asymbiotica 8169044 YP_003040716.1 CDS PAU_01880 NC_012962.1 2112109 2112429 D hypothetical protein 2112109..2112429 Photorhabdus asymbiotica 8165497 YP_003040717.1 CDS yfbJ NC_012962.1 2112429 2112821 D hypothetical protein 2112429..2112821 Photorhabdus asymbiotica 8169045 YP_003040718.1 CDS PAU_01882 NC_012962.1 2112876 2113001 D hypothetical protein 2112876..2113001 Photorhabdus asymbiotica 8165480 YP_003040719.1 CDS nlpC NC_012962.1 2113042 2113527 D probable lipoprotein nlpc 2113042..2113527 Photorhabdus asymbiotica 8169046 YP_003040720.1 CDS yrpD NC_012962.1 2113786 2114397 R hypothetical protein complement(2113786..2114397) Photorhabdus asymbiotica 8166925 YP_003040721.1 CDS kpdC NC_012962.1 2114967 2115896 D hypothetical protein 2114967..2115896 Photorhabdus asymbiotica 8169185 YP_003040722.1 CDS flhE NC_012962.1 2116075 2116497 R flagellar protein complement(2116075..2116497) Photorhabdus asymbiotica 8165066 YP_003040723.1 CDS PAU_01887 NC_012962.1 2116821 2117537 D ABC transporter ATP-binding protein 2116821..2117537 Photorhabdus asymbiotica 8168114 YP_003040724.1 CDS PAU_01888 NC_012962.1 2117546 2118736 D ABC transporter permease 2117546..2118736 Photorhabdus asymbiotica 8169047 YP_003040725.1 CDS PAU_01889 NC_012962.1 2118729 2120207 D probable outer membrane protein 2118729..2120207 Photorhabdus asymbiotica 8169048 YP_003040726.1 CDS PAU_01890 NC_012962.1 2120200 2121474 D hypothetical protein 2120200..2121474 Photorhabdus asymbiotica 8169049 YP_003040727.1 CDS PAU_01891 NC_012962.1 2122088 2122543 D hypothetical protein 2122088..2122543 Photorhabdus asymbiotica 8169050 YP_003040728.1 CDS PAU_01892 NC_012962.1 2123020 2123430 D hypothetical protein 2123020..2123430 Photorhabdus asymbiotica 8169051 YP_003040729.1 CDS PAU_01893 NC_012962.1 2124147 2124509 R right origin-binding protein-transcriptional regulator complement(2124147..2124509) Photorhabdus asymbiotica 8169052 YP_003040730.1 CDS PAU_01894 NC_012962.1 2124772 2125386 D hypothetical protein 2124772..2125386 Photorhabdus asymbiotica 8169053 YP_003040731.1 CDS hmuV NC_012962.1 2125447 2126241 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(2125447..2126241) Photorhabdus asymbiotica 8169054 YP_003040732.1 CDS PAU_01896 NC_012962.1 2126241 2127242 R putative hemin permease complement(2126241..2127242) Photorhabdus asymbiotica 8167296 YP_003040733.1 CDS chuT NC_012962.1 2127239 2128057 R putative periplasmic binding protein (putative hemin binding protein) complement(2127239..2128057) Photorhabdus asymbiotica 8169055 YP_003040734.1 CDS chuS NC_012962.1 2128054 2129127 R putative heme/hemoglobin transport protein (putative uncharacterize protein ecs4379) complement(2128054..2129127) Photorhabdus asymbiotica 8168568 YP_003040735.1 CDS PAU_01899 NC_012962.1 2129160 2131247 R outer membrane heme/hemoglobin receptor (heme utilization/transpor protein) complement(2129160..2131247) Photorhabdus asymbiotica 8168567 YP_003040736.1 CDS aroH NC_012962.1 2131573 2132619 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2131573..2132619) Photorhabdus asymbiotica 8169056 YP_003040737.1 CDS ydiA NC_012962.1 2132886 2133749 R hypothetical protein complement(2132886..2133749) Photorhabdus asymbiotica 8165504 YP_003040738.1 CDS ppsA NC_012962.1 2133962 2136340 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2133962..2136340 Photorhabdus asymbiotica 8165435 YP_003040739.1 CDS PAU_01903 NC_012962.1 2136787 2137896 R YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; putative inner membrane protein complement(2136787..2137896) Photorhabdus asymbiotica 8168302 YP_003040740.1 CDS PAU_01904 NC_012962.1 2138117 2141176 D hypothetical protein 2138117..2141176 Photorhabdus asymbiotica 8169057 YP_003040741.1 CDS PAU_01905 NC_012962.1 2141173 2141589 D hypothetical protein 2141173..2141589 Photorhabdus asymbiotica 8169058 YP_003040742.1 CDS ISPlu8C3 NC_012962.1 2142648 2143700 R transposase, IS630 family complement(2142648..2143700) Photorhabdus asymbiotica 8169059 YP_003040743.1 CDS sufA NC_012962.1 2144204 2144572 D functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 2144204..2144572 Photorhabdus asymbiotica 8165042 YP_003040744.1 CDS sufB NC_012962.1 2144585 2146063 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 2144585..2146063 Photorhabdus asymbiotica 8165436 YP_003040745.1 CDS sufC NC_012962.1 2146120 2146866 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase ATPase component 2146120..2146866 Photorhabdus asymbiotica 8167691 YP_003040746.1 CDS ynhC NC_012962.1 2146841 2148154 D with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 2146841..2148154 Photorhabdus asymbiotica 8165004 YP_003040747.1 CDS sufS NC_012962.1 2148151 2149389 D catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 2148151..2149389 Photorhabdus asymbiotica 8165003 YP_003040748.1 CDS sufE NC_012962.1 2149427 2149843 D Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 2149427..2149843 Photorhabdus asymbiotica 8167694 YP_003040749.1 CDS ycfS NC_012962.1 2149965 2151041 D hypothetical protein 2149965..2151041 Photorhabdus asymbiotica 8167692 YP_003040750.1 CDS lpp NC_012962.1 2151148 2151384 R major outer membrane lipoprotein precursor (murein-lipoprotein) complement(2151148..2151384) Photorhabdus asymbiotica 8166633 YP_003040751.1 CDS PAU_01915 NC_012962.1 2151823 2152677 D hypothetical protein 2151823..2152677 Photorhabdus asymbiotica 8168917 YP_003040752.1 CDS PAU_01916 NC_012962.1 2153580 2153720 R hypothetical protein complement(2153580..2153720) Photorhabdus asymbiotica 8169060 YP_003040753.1 CDS PAU_01917 NC_012962.1 2153742 2154239 R transposase complement(2153742..2154239) Photorhabdus asymbiotica 8169061 YP_003040754.1 CDS PAU_01918 NC_012962.1 2154348 2154758 R transposase is3/is911 complement(2154348..2154758) Photorhabdus asymbiotica 8169062 YP_003040755.1 CDS PAU_01919 NC_012962.1 2154942 2156747 R Type III secretion system outer membrane complement(2154942..2156747) Photorhabdus asymbiotica 8169063 YP_003040756.1 CDS pykF NC_012962.1 2157038 2158447 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(2157038..2158447) Photorhabdus asymbiotica 8169064 YP_003040757.1 CDS mdtK NC_012962.1 2159262 2160635 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(2159262..2160635) Photorhabdus asymbiotica 8166970 YP_003040758.1 CDS ribE NC_012962.1 2160904 2161560 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2160904..2161560 Photorhabdus asymbiotica 8168981 YP_003040759.1 CDS PAU_01923 NC_012962.1 2162036 2163013 D hypothetical protein 2162036..2163013 Photorhabdus asymbiotica 8165181 YP_003040760.1 CDS cfa NC_012962.1 2163190 2164341 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane fatty acyl phospholipid synthase complement(2163190..2164341) Photorhabdus asymbiotica 8169065 YP_003040761.1 CDS ydhC NC_012962.1 2164629 2165837 R uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC complement(2164629..2165837) Photorhabdus asymbiotica 8168554 YP_003040762.1 CDS ydhB NC_012962.1 2165985 2166893 D putative DNA-binding transcriptional regulator 2165985..2166893 Photorhabdus asymbiotica 8165431 YP_003040763.1 CDS purR NC_012962.1 2166907 2167932 R binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR complement(2166907..2167932) Photorhabdus asymbiotica 8165430 YP_003040764.1 CDS sodB NC_012962.1 2168416 2168994 R SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase complement(2168416..2168994) Photorhabdus asymbiotica 8165108 YP_003040765.1 CDS PAU_01929 NC_012962.1 2169157 2169354 D hypothetical protein 2169157..2169354 Photorhabdus asymbiotica 8167662 YP_003040766.1 CDS grxD NC_012962.1 2169516 2169863 D hypothetical protein 2169516..2169863 Photorhabdus asymbiotica 8169066 YP_003040767.1 CDS rnt NC_012962.1 2170194 2170847 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(2170194..2170847) Photorhabdus asymbiotica 8169268 YP_003040768.1 CDS gloA NC_012962.1 2170847 2171260 R lactoylglutathione lyase (methylglyoxalase) (s-d-lactolyglutathion methylglyoxal lyase) complement(2170847..2171260) Photorhabdus asymbiotica 8164886 YP_003040769.1 CDS PAU_01933 NC_012962.1 2171412 2171672 D hypothetical protein 2171412..2171672 Photorhabdus asymbiotica 8167758 YP_003040770.1 CDS slyA NC_012962.1 2172231 2172662 D Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 2172231..2172662 Photorhabdus asymbiotica 8169067 YP_003040771.1 CDS slyB NC_012962.1 2172750 2173220 R outer membrane lipoprotein slyb complement(2172750..2173220) Photorhabdus asymbiotica 8167650 YP_003040772.1 CDS anmK NC_012962.1 2173565 2174683 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 2173565..2174683 Photorhabdus asymbiotica 8167652 YP_003040773.1 CDS pdxH NC_012962.1 2174731 2175384 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 2174731..2175384 Photorhabdus asymbiotica 8166783 YP_003040774.1 CDS tyrS NC_012962.1 2175623 2176897 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 2175623..2176897 Photorhabdus asymbiotica 8168691 YP_003040775.1 CDS pdxY NC_012962.1 2176992 2177855 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 2176992..2177855 Photorhabdus asymbiotica 8168390 YP_003040776.1 CDS gst NC_012962.1 2177911 2178516 R glutathionine S-transferase complement(2177911..2178516) Photorhabdus asymbiotica 8168694 YP_003040777.1 CDS PAU_01941 NC_012962.1 2178858 2179616 R hypothetical protein complement(2178858..2179616) Photorhabdus asymbiotica 8169270 YP_003040778.1 CDS fabI NC_012962.1 2180030 2180818 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(2180030..2180818) Photorhabdus asymbiotica 8169068 YP_003040779.1 CDS sapF NC_012962.1 2181005 2181814 R peptide transport system atp-binding protein sapf complement(2181005..2181814) Photorhabdus asymbiotica 8166497 YP_003040780.1 CDS sapD NC_012962.1 2181817 2182806 R peptide transport system atp-binding protein sapd complement(2181817..2182806) Photorhabdus asymbiotica 8167175 YP_003040781.1 CDS sapC NC_012962.1 2182807 2183697 R peptide transport system permease protein sapc complement(2182807..2183697) Photorhabdus asymbiotica 8167174 YP_003040782.1 CDS sapB NC_012962.1 2183684 2184649 R peptide transport system permease protein sapb complement(2183684..2184649) Photorhabdus asymbiotica 8167173 YP_003040783.1 CDS sapA NC_012962.1 2184646 2186310 R peptide transport periplasmic protein sapa complement(2184646..2186310) Photorhabdus asymbiotica 8167172 YP_003040784.1 CDS pspF NC_012962.1 2186568 >2187584 R transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator complement(2186568..>2187584) Photorhabdus asymbiotica 8167171 YP_003040785.1 CDS pspA NC_012962.1 2187749 2188420 D involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 2187749..2188420 Photorhabdus asymbiotica 8168335 YP_003040786.1 CDS pspB NC_012962.1 2188456 2188683 D acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 2188456..2188683 Photorhabdus asymbiotica 8168332 YP_003040787.1 CDS pspC NC_012962.1 2188670 2189023 D with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC 2188670..2189023 Photorhabdus asymbiotica 8168333 YP_003040788.1 CDS PAU_01952 NC_012962.1 2189033 2189152 D hypothetical protein 2189033..2189152 Photorhabdus asymbiotica 8168334 YP_003040789.1 CDS ycjX NC_012962.1 2189253 2190650 D hypothetical protein 2189253..2190650 Photorhabdus asymbiotica 8169069 YP_003040790.1 CDS ycjF NC_012962.1 2190647 2191708 D hypothetical protein 2190647..2191708 Photorhabdus asymbiotica 8165414 YP_003040791.1 CDS PAU_01955 NC_012962.1 2191859 2191993 R hypothetical protein complement(2191859..2191993) Photorhabdus asymbiotica 8165413 YP_003040792.1 CDS tyrR NC_012962.1 2192078 2193661 D regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 2192078..2193661 Photorhabdus asymbiotica 8169070 YP_003040793.1 CDS tpx NC_012962.1 2193703 2194206 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(2193703..2194206) Photorhabdus asymbiotica 8168389 YP_003040794.1 CDS mppA NC_012962.1 2194385 2196007 D periplasmic murein peptide-binding protein 2194385..2196007 Photorhabdus asymbiotica 8167527 YP_003040795.1 CDS PAU_01959 NC_012962.1 2196241 2196396 D putative integrase 2196241..2196396 Photorhabdus asymbiotica 8166357 YP_003040796.1 CDS PAU_01960 NC_012962.1 2196971 2197306 D hypothetical protein 2196971..2197306 Photorhabdus asymbiotica 8169071 YP_003040797.1 CDS PAU_01961 NC_012962.1 2197303 2197656 D hypothetical protein 2197303..2197656 Photorhabdus asymbiotica 8169072 YP_003040798.1 CDS PAU_01962 NC_012962.1 2197838 2198173 D hypothetical protein 2197838..2198173 Photorhabdus asymbiotica 8169073 YP_003040799.1 CDS zntB NC_012962.1 2198245 2199228 D zinc transporter 2198245..2199228 Photorhabdus asymbiotica 8169074 YP_003040800.1 CDS ydaO NC_012962.1 2199786 2200679 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2199786..2200679 Photorhabdus asymbiotica 8169195 YP_003040801.1 CDS PAU_01965 NC_012962.1 2201540 2201872 D Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells.; methylviologen resistance protein encoded within prophage cp-933 (integral membrane drug resistance protein emre) 2201540..2201872 Photorhabdus asymbiotica 8165416 YP_003040802.1 CDS ydbJ NC_012962.1 2201921 2202220 D hypothetical protein 2201921..2202220 Photorhabdus asymbiotica 8169075 YP_003040803.1 CDS dsbB NC_012962.1 2202372 2202881 R disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B complement(2202372..2202881) Photorhabdus asymbiotica 8165417 YP_003040804.1 CDS nhaB NC_012962.1 2203041 2204582 R involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter complement(2203041..2204582) Photorhabdus asymbiotica 8168649 YP_003040805.1 CDS fadR NC_012962.1 2204805 2205524 D Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2204805..2205524 Photorhabdus asymbiotica 8166920 YP_003040806.1 CDS dadA NC_012962.1 2206046 2207347 D catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 2206046..2207347 Photorhabdus asymbiotica 8166507 YP_003040807.1 CDS dadX NC_012962.1 2207362 2208435 D alanine racemase, catabolic 2207362..2208435 Photorhabdus asymbiotica 8169152 YP_003040808.1 CDS yeaF NC_012962.1 2208827 2209579 D putative uncharacterized protein yeaf (putative scaffolding protein i the formation of a murein-synthesizing holoenzyme) 2208827..2209579 Photorhabdus asymbiotica 8169153 YP_003040809.1 CDS yeaD NC_012962.1 2209669 2210547 R hypothetical protein complement(2209669..2210547) Photorhabdus asymbiotica 8165443 YP_003040810.1 CDS gapA NC_012962.1 2210671 2211666 R glyceraldehyde-3-phosphate dehydrogenase a (gapdh-a) complement(2210671..2211666) Photorhabdus asymbiotica 8165442 YP_003040811.1 CDS msrB NC_012962.1 2212003 2212413 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 2212003..2212413 Photorhabdus asymbiotica 8168188 YP_003040812.1 CDS yeaC NC_012962.1 2212499 2212768 D hypothetical protein 2212499..2212768 Photorhabdus asymbiotica 8166387 YP_003040813.1 CDS ydjB NC_012962.1 2212833 2213471 R catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase complement(2212833..2213471) Photorhabdus asymbiotica 8165441 YP_003040814.1 CDS ansA NC_012962.1 2213484 2214503 R converts asparagine to aspartate and ammonia; cytoplasmic asparaginase I complement(2213484..2214503) Photorhabdus asymbiotica 8165438 YP_003040815.1 CDS sppA NC_012962.1 2214656 2216512 R SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 complement(2214656..2216512) Photorhabdus asymbiotica 8166784 YP_003040816.1 CDS ydjA NC_012962.1 2216684 2217235 D hypothetical protein 2216684..2217235 Photorhabdus asymbiotica 8167674 YP_003040817.1 CDS selD NC_012962.1 2217248 2218291 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 2217248..2218291 Photorhabdus asymbiotica 8165437 YP_003040818.1 CDS topB NC_012962.1 2218297 2220225 D decatenates replicating daughter chromosomes; DNA topoisomerase III 2218297..2220225 Photorhabdus asymbiotica 8167635 YP_003040819.1 CDS xthA NC_012962.1 2220284 2221090 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(2220284..2221090) Photorhabdus asymbiotica 8167524 YP_003040820.1 CDS PAU_01984 NC_012962.1 2221592 2222455 D LysR family transcriptional regulator 2221592..2222455 Photorhabdus asymbiotica 8168508 YP_003040821.1 CDS PAU_01985 NC_012962.1 2223002 2223958 R hypothetical protein complement(2223002..2223958) Photorhabdus asymbiotica 8169076 YP_003040822.1 CDS PAU_01986 NC_012962.1 2225165 2225866 D putative tail fiber protein 2225165..2225866 Photorhabdus asymbiotica 8169077 YP_003040823.1 CDS PAU_01987 NC_012962.1 2225869 2226492 D putative tail fiber protein of prophage cp-933x (tail fiber assembl protein) 2225869..2226492 Photorhabdus asymbiotica 8169078 YP_003040824.1 CDS orf47 NC_012962.1 2227211 2228797 D hypothetical protein 2227211..2228797 Photorhabdus asymbiotica 8169079 YP_003040825.1 CDS PAU_01989 NC_012962.1 2228820 2229893 D hypothetical protein 2228820..2229893 Photorhabdus asymbiotica 8165606 YP_003040826.1 CDS PAU_01990 NC_012962.1 2229945 2231087 D hypothetical protein 2229945..2231087 Photorhabdus asymbiotica 8169080 YP_003040827.1 CDS PAU_01991 NC_012962.1 2231251 2232378 D hypothetical protein 2231251..2232378 Photorhabdus asymbiotica 8169081 YP_003040828.1 CDS PAU_01992 NC_012962.1 2232610 2233092 R hypothetical protein complement(2232610..2233092) Photorhabdus asymbiotica 8169082 YP_003040829.1 CDS PAU_01993 NC_012962.1 2233799 2234248 D hypothetical protein 2233799..2234248 Photorhabdus asymbiotica 8165821 YP_003040830.1 CDS PAU_01994 NC_012962.1 2234285 2235409 D hypothetical protein 2234285..2235409 Photorhabdus asymbiotica 8165822 YP_003040831.1 CDS PAU_01995 NC_012962.1 2235590 2237071 D hypothetical protein 2235590..2237071 Photorhabdus asymbiotica 8165823 YP_003040832.1 CDS PAU_01996 NC_012962.1 2237125 2238324 D hypothetical protein 2237125..2238324 Photorhabdus asymbiotica 8165824 YP_003040833.1 CDS afp5 NC_012962.1 2238338 2238796 D hypothetical protein 2238338..2238796 Photorhabdus asymbiotica 8165825 YP_003040834.1 CDS PAU_01998 NC_012962.1 2238793 2238972 D hypothetical protein 2238793..2238972 Photorhabdus asymbiotica 8166756 YP_003040835.1 CDS PAU_01999 NC_012962.1 2238959 2239642 D hypothetical protein 2238959..2239642 Photorhabdus asymbiotica 8165826 YP_003040836.1 CDS PAU_02000 NC_012962.1 2239639 2241240 D hypothetical protein 2239639..2241240 Photorhabdus asymbiotica 8165827 YP_003040837.1 CDS PAU_02001 NC_012962.1 2241268 2241696 D hypothetical protein 2241268..2241696 Photorhabdus asymbiotica 8165828 YP_003040838.1 CDS PAU_02002 NC_012962.1 2241693 2242109 D hypothetical protein 2241693..2242109 Photorhabdus asymbiotica 8165829 YP_003040839.1 CDS PAU_02003 NC_012962.1 2242318 2245044 D hypothetical protein 2242318..2245044 Photorhabdus asymbiotica 8165830 YP_003040840.1 CDS PAU_02004 NC_012962.1 2245037 2247988 D hypothetical protein 2245037..2247988 Photorhabdus asymbiotica 8165831 YP_003040841.1 CDS PAU_02005 NC_012962.1 2248115 2248975 D hypothetical protein 2248115..2248975 Photorhabdus asymbiotica 8165832 YP_003040842.1 CDS PAU_02006 NC_012962.1 2249038 2250936 D hypothetical protein 2249038..2250936 Photorhabdus asymbiotica 8165833 YP_003040843.1 CDS PAU_02007 NC_012962.1 2250946 2253018 D hypothetical protein 2250946..2253018 Photorhabdus asymbiotica 8165834 YP_003040844.1 CDS afp16 NC_012962.1 2253043 2253957 D hypothetical protein 2253043..2253957 Photorhabdus asymbiotica 8165835 YP_003040845.1 CDS cif NC_012962.1 2254115 2255014 D hypothetical protein 2254115..2255014 Photorhabdus asymbiotica 8166751 YP_003040846.1 CDS tccC3 NC_012962.1 2255099 2256082 D insecticidal toxin complex protein tccc3 2255099..2256082 Photorhabdus asymbiotica 8168569 YP_003040847.1 CDS PAU_02011 NC_012962.1 2256579 2257475 D hypothetical protein 2256579..2257475 Photorhabdus asymbiotica 8167478 YP_003040848.1 CDS PAU_02012 NC_012962.1 2257447 2257905 D hypothetical protein 2257447..2257905 Photorhabdus asymbiotica 8165836 YP_003040849.1 CDS PAU_02013 NC_012962.1 2258503 2259888 R putative Gluconate transport protein complement(2258503..2259888) Photorhabdus asymbiotica 8165837 YP_003040850.1 CDS PAU_02014 NC_012962.1 2259891 2260856 R hypothetical protein complement(2259891..2260856) Photorhabdus asymbiotica 8165838 YP_003040851.1 CDS PAU_02015 NC_012962.1 2260990 2261817 R putative regulatory protein, deor family complement(2260990..2261817) Photorhabdus asymbiotica 8165839 YP_003040852.1 CDS gclR NC_012962.1 2261829 2262608 R putative regulatory protein complement(2261829..2262608) Photorhabdus asymbiotica 8165840 YP_003040853.1 CDS orf37 NC_012962.1 2262625 2263263 R putative aldolase complement(2262625..2263263) Photorhabdus asymbiotica 8168191 YP_003040854.1 CDS PAU_02018 NC_012962.1 2263256 2264533 R hypothetical protein complement(2263256..2264533) Photorhabdus asymbiotica 8165599 YP_003040855.1 CDS orf39 NC_012962.1 2264533 2265438 R hypothetical protein complement(2264533..2265438) Photorhabdus asymbiotica 8165841 YP_003040856.1 CDS PAU_02020 NC_012962.1 2265817 2265981 D hypothetical protein 2265817..2265981 Photorhabdus asymbiotica 8165600 YP_003040857.1 CDS PAU_02021 NC_012962.1 <2266144 2266236 D hypothetical protein <2266144..2266236 Photorhabdus asymbiotica 8166972 YP_003040858.1 CDS purU NC_012962.1 2266358 2267206 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(2266358..2267206) Photorhabdus asymbiotica 8165843 YP_003040859.1 CDS PAU_02023 NC_012962.1 2267266 2267727 R hypothetical protein complement(2267266..2267727) Photorhabdus asymbiotica 8165109 YP_003040860.1 CDS hnr NC_012962.1 2267885 2268910 D response regulator of RpoS 2267885..2268910 Photorhabdus asymbiotica 8165844 YP_003040861.1 CDS galU NC_012962.1 <2269334 2270248 D utp--glucose-1-phosphate uridylyltransferase (udp-glucos pyrophosphorylase) (udpgp) <2269334..2270248 Photorhabdus asymbiotica 8167297 YP_003040862.1 CDS ugd NC_012962.1 2270272 2271618 D putative udp-glucose dehydrogenase (putative nucleotide suga dehydrogenase) 2270272..2271618 Photorhabdus asymbiotica 8168187 YP_003040863.1 CDS wbnF NC_012962.1 2271623 2272636 D Nucleotide sugar epimerase 2271623..2272636 Photorhabdus asymbiotica 8168405 YP_003040864.1 CDS hns NC_012962.1 2272936 2273340 R dna-binding protein h-ns (histone-like protein hlp-ii) complement(2272936..2273340) Photorhabdus asymbiotica 8168480 YP_003040865.1 CDS tdk NC_012962.1 2273986 2274591 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 2273986..2274591 Photorhabdus asymbiotica 8167298 YP_003040866.1 CDS adhE NC_012962.1 2274724 2277384 R bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(2274724..2277384) Photorhabdus asymbiotica 8167489 YP_003040867.1 CDS ychE NC_012962.1 2277792 2278436 D hypothetical protein 2277792..2278436 Photorhabdus asymbiotica 8166742 YP_003040868.1 CDS oppA1 NC_012962.1 2279003 2280640 D oligopeptide transport periplasmic binding protein 2279003..2280640 Photorhabdus asymbiotica 8166637 YP_003040869.1 CDS oppA2 NC_012962.1 2280773 2282413 D oligopeptide transport periplasmic binding protein 2280773..2282413 Photorhabdus asymbiotica 8165579 YP_003040870.1 CDS oppB NC_012962.1 2282498 2283418 D oligopeptide transporter permease 2282498..2283418 Photorhabdus asymbiotica 8165580 YP_003040871.1 CDS oppC NC_012962.1 2283435 2284343 D oligopeptide transport system permease protein oppc 2283435..2284343 Photorhabdus asymbiotica 8165581 YP_003040872.1 CDS oppD NC_012962.1 2284353 2285351 D oligopeptide transporter ATP-binding component 2284353..2285351 Photorhabdus asymbiotica 8165582 YP_003040873.1 CDS oppF NC_012962.1 2285348 2286349 D oligopeptide transport atp-binding protein oppf 2285348..2286349 Photorhabdus asymbiotica 8165583 YP_003040874.1 CDS yciU NC_012962.1 2286632 2286961 R highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein complement(2286632..2286961) Photorhabdus asymbiotica 8165584 YP_003040875.1 CDS cls NC_012962.1 2287074 2288543 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase complement(2287074..2288543) Photorhabdus asymbiotica 8165412 YP_003040876.1 CDS PAU_02040 NC_012962.1 2288783 2288956 D hypothetical protein 2288783..2288956 Photorhabdus asymbiotica 8168583 YP_003040877.1 CDS tonB NC_012962.1 2289067 2289756 D membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transport protein TonB 2289067..2289756 Photorhabdus asymbiotica 8165845 YP_003040878.1 CDS PAU_02042 NC_012962.1 2289950 2290381 R YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase complement(2289950..2290381) Photorhabdus asymbiotica 8167522 YP_003040879.1 CDS ispZ NC_012962.1 2290459 2290995 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(2290459..2290995) Photorhabdus asymbiotica 8165846 YP_003040880.1 CDS PAU_02044 NC_012962.1 2291221 2292933 D sulfate permease family protein 2291221..2292933 Photorhabdus asymbiotica 8165045 YP_003040881.1 CDS PAU_02045 NC_012962.1 2293017 2293382 D hypothetical protein 2293017..2293382 Photorhabdus asymbiotica 8165847 YP_003040882.1 CDS PAU_02046 NC_012962.1 2293387 2293788 D hypothetical protein 2293387..2293788 Photorhabdus asymbiotica 8165848 YP_003040883.1 CDS ompX NC_012962.1 2294358 2294888 D outer membrane protein x precursor 2294358..2294888 Photorhabdus asymbiotica 8165849 YP_003040884.1 CDS yciC NC_012962.1 2294967 2295731 R hypothetical protein complement(2294967..2295731) Photorhabdus asymbiotica 8165576 YP_003040885.1 CDS ompW NC_012962.1 2296169 2296810 D receptor for colicin S4; outer membrane protein W 2296169..2296810 Photorhabdus asymbiotica 8166641 YP_003040886.1 CDS trpA NC_012962.1 2296869 2297675 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(2296869..2297675) Photorhabdus asymbiotica 8165575 YP_003040887.1 CDS trpB NC_012962.1 2297675 2298865 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(2297675..2298865) Photorhabdus asymbiotica 8168361 YP_003040888.1 CDS trpC NC_012962.1 2298908 2300269 R monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(2298908..2300269) Photorhabdus asymbiotica 8168362 YP_003040889.1 CDS trpD NC_012962.1 2300272 2301270 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(2300272..2301270) Photorhabdus asymbiotica 8168363 YP_003040890.1 CDS trpG NC_012962.1 2301284 2301862 R anthranilate synthase component ii (glutamine amido-transferase) complement(2301284..2301862) Photorhabdus asymbiotica 8168364 YP_003040891.1 CDS trpE NC_012962.1 2301862 2303430 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(2301862..2303430) Photorhabdus asymbiotica 8168366 YP_003040892.1 CDS PAU_02056 NC_012962.1 2304406 2306052 D exochitinase-like protein 2304406..2306052 Photorhabdus asymbiotica 8168365 YP_003040893.1 CDS tccA2 NC_012962.1 2306135 2309686 D insecticidal toxin complex protein tcca2 2306135..2309686 Photorhabdus asymbiotica 8165850 YP_003040894.1 CDS tccB2 NC_012962.1 2309679 2313770 D insecticidal toxin complex protein tccb2 2309679..2313770 Photorhabdus asymbiotica 8167474 YP_003040895.1 CDS chi NC_012962.1 2313898 2315784 D exochitinase-like protein 2313898..2315784 Photorhabdus asymbiotica 8167475 YP_003040896.1 CDS pin NC_012962.1 2316037 2316333 D bacteriophage tail fiber protein 2316037..2316333 Photorhabdus asymbiotica 8168564 YP_003040897.1 CDS PAU_02061 NC_012962.1 2316451 2317224 R integrase, catalytic region complement(2316451..2317224) Photorhabdus asymbiotica 8168752 YP_003040898.1 CDS PAU_02062 NC_012962.1 2317293 2317799 R is putative transposase complement(2317293..2317799) Photorhabdus asymbiotica 8165851 YP_003040899.1 CDS PAU_02063 NC_012962.1 2318276 2319028 D hypothetical protein 2318276..2319028 Photorhabdus asymbiotica 8165852 YP_003040900.1 CDS PAU_02064 NC_012962.1 2319056 2319676 D hypothetical protein 2319056..2319676 Photorhabdus asymbiotica 8165853 YP_003040901.1 CDS rluB NC_012962.1 2320132 2321064 D catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B 2320132..2321064 Photorhabdus asymbiotica 8165854 YP_003040902.1 CDS btuR NC_012962.1 2321107 2321703 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(2321107..2321703) Photorhabdus asymbiotica 8164866 YP_003040903.1 CDS yciK NC_012962.1 2321703 2322467 R short chain dehydrogenase complement(2321703..2322467) Photorhabdus asymbiotica 8168525 YP_003040904.1 CDS PAU_02068 NC_012962.1 2322616 2322738 D bacteriophage tail fiber protein 2322616..2322738 Photorhabdus asymbiotica 8166065 YP_003040905.1 CDS pa-1L NC_012962.1 2322967 2323338 R lectin; pa-i galactophilic lectin-like protein complement(2322967..2323338) Photorhabdus asymbiotica 8165855 YP_003040906.1 CDS VP0380 NC_012962.1 2323725 2323868 R phage integrase complement(2323725..2323868) Photorhabdus asymbiotica 8165625 YP_003040907.1 CDS sohB NC_012962.1 2324050 2325096 D SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 2324050..2325096 Photorhabdus asymbiotica 8168451 YP_003040908.1 CDS PAU_02072 NC_012962.1 2325501 2326331 D putative hydrolase 2325501..2326331 Photorhabdus asymbiotica 8167664 YP_003040909.1 CDS PAU_02073 NC_012962.1 2326795 2326959 D hypothetical protein 2326795..2326959 Photorhabdus asymbiotica 8165856 YP_003040910.1 CDS topA NC_012962.1 2327113 2329713 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2327113..2329713 Photorhabdus asymbiotica 8165857 YP_003040911.1 CDS cysB NC_012962.1 2330018 2330992 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2330018..2330992 Photorhabdus asymbiotica 8167523 YP_003040912.1 CDS PAU_02076 NC_012962.1 2331043 2331870 R hypothetical protein complement(2331043..2331870) Photorhabdus asymbiotica 8169126 YP_003040913.1 CDS acnA NC_012962.1 2332118 2334793 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2332118..2334793 Photorhabdus asymbiotica 8165858 YP_003040914.1 CDS ribA NC_012962.1 2334875 2335486 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(2334875..2335486) Photorhabdus asymbiotica 8166732 YP_003040915.1 CDS pgpB NC_012962.1 2335854 2336129 D phosphatidylglycerophosphatase B 2335854..2336129 Photorhabdus asymbiotica 8165178 YP_003040916.1 CDS yciS NC_012962.1 2336425 2336766 D putative inner membrane protein ycis 2336425..2336766 Photorhabdus asymbiotica 8168714 YP_003040917.1 CDS yciM NC_012962.1 2336856 2338025 D tetratricopeptide repeat protein 2336856..2338025 Photorhabdus asymbiotica 8165411 YP_003040918.1 CDS pyrF NC_012962.1 2338070 2338816 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2338070..2338816 Photorhabdus asymbiotica 8165410 YP_003040919.1 CDS yciH NC_012962.1 2338806 2339132 D involved in start site selection during the initiation of translation; translation initiation factor Sui1 2338806..2339132 Photorhabdus asymbiotica 8165124 YP_003040920.1 CDS PAU_02084 NC_012962.1 2339518 2340123 D transcriptional regulator, tetr family 2339518..2340123 Photorhabdus asymbiotica 8166642 YP_003040921.1 CDS PAU_02085 NC_012962.1 2340148 2340627 D hypothetical protein 2340148..2340627 Photorhabdus asymbiotica 8165859 YP_003040922.1 CDS PAU_02086 NC_012962.1 2340761 2342041 R hypothetical protein complement(2340761..2342041) Photorhabdus asymbiotica 8165860 YP_003040923.1 CDS PAU_02087 NC_012962.1 2342038 2342400 R hypothetical protein complement(2342038..2342400) Photorhabdus asymbiotica 8165861 YP_003040924.1 CDS PAU_02088 NC_012962.1 2342892 2344241 D Filamentation induced by cAMP protein Fic 2342892..2344241 Photorhabdus asymbiotica 8165862 YP_003040925.1 CDS dnt NC_012962.1 2344359 2349263 R cytotoxic necrotizing factor proteins alter host cell actin cytoskeleton and promote bacterial invasion of the blood-brain barrier endothelial cells. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton; cytotoxic necrotizing factor complement(2344359..2349263) Photorhabdus asymbiotica 8165863 YP_003040926.1 CDS PAU_02090 NC_012962.1 2349890 2350939 R nitrilase complement(2349890..2350939) Photorhabdus asymbiotica 8168639 YP_003040927.1 CDS PAU_02091 NC_012962.1 2351547 2351705 D hypothetical protein 2351547..2351705 Photorhabdus asymbiotica 8165864 YP_003040928.1 CDS PAU_02092 NC_012962.1 2351702 2352160 R hypothetical protein complement(2351702..2352160) Photorhabdus asymbiotica 8165865 YP_003040929.1 CDS PAU_02093 NC_012962.1 2352247 2352840 D hypothetical protein 2352247..2352840 Photorhabdus asymbiotica 8165866 YP_003040930.1 CDS PAU_02094 NC_012962.1 2352859 2352954 D hypothetical protein 2352859..2352954 Photorhabdus asymbiotica 8165867 YP_003040931.1 CDS PAU_02095 NC_012962.1 2353002 2355782 R insecticidal toxin complex TccC complement(2353002..2355782) Photorhabdus asymbiotica 8165868 YP_003040932.1 CDS yopT NC_012962.1 2355882 2356856 R cysteine protease complement(2355882..2356856) Photorhabdus asymbiotica 8165869 YP_003040933.1 CDS PAU_02097 NC_012962.1 2356952 2357866 R hypothetical protein complement(2356952..2357866) Photorhabdus asymbiotica 8165015 YP_003040934.1 CDS PAU_02098 NC_012962.1 2357938 2359566 R RtxA toxin complement(2357938..2359566) Photorhabdus asymbiotica 8165870 YP_003040935.1 CDS PAU_02099 NC_012962.1 2359739 2360629 R hypothetical protein complement(2359739..2360629) Photorhabdus asymbiotica 8165871 YP_003040936.1 CDS PAU_02100 NC_012962.1 2360778 2362847 R hypothetical protein complement(2360778..2362847) Photorhabdus asymbiotica 8165872 YP_003040937.1 CDS PAU_02101 NC_012962.1 2362866 2364287 R hypothetical protein complement(2362866..2364287) Photorhabdus asymbiotica 8165873 YP_003040938.1 CDS PAU_02102 NC_012962.1 2364421 2367441 R hypothetical protein complement(2364421..2367441) Photorhabdus asymbiotica 8165874 YP_003040939.1 CDS PAU_02103 NC_012962.1 2367470 2371525 R hypothetical protein complement(2367470..2371525) Photorhabdus asymbiotica 8165875 YP_003040940.1 CDS PAU_02104 NC_012962.1 2371609 2372025 R hypothetical protein complement(2371609..2372025) Photorhabdus asymbiotica 8165876 YP_003040941.1 CDS PAU_02105 NC_012962.1 2372022 2372444 R phage baseplate assembly protein complement(2372022..2372444) Photorhabdus asymbiotica 8165877 YP_003040942.1 CDS PAU_02106 NC_012962.1 2372457 2374058 R hypothetical protein complement(2372457..2374058) Photorhabdus asymbiotica 8165878 YP_003040943.1 CDS PAU_02107 NC_012962.1 2374055 2374738 R hypothetical protein complement(2374055..2374738) Photorhabdus asymbiotica 8165879 YP_003040944.1 CDS PAU_02108 NC_012962.1 2374725 2374901 R hypothetical protein complement(2374725..2374901) Photorhabdus asymbiotica 8165880 YP_003040945.1 CDS PAU_02109 NC_012962.1 2374898 2375356 R hypothetical protein complement(2374898..2375356) Photorhabdus asymbiotica 8165881 YP_003040946.1 CDS PAU_02110 NC_012962.1 2375375 2376550 R Phage tail sheath protein complement(2375375..2376550) Photorhabdus asymbiotica 8165882 YP_003040947.1 CDS PAU_02111 NC_012962.1 2376611 2377660 R Phage tail sheath protein complement(2376611..2377660) Photorhabdus asymbiotica 8165883 YP_003040948.1 CDS PAU_02112 NC_012962.1 2377791 >2378213 R CHP02241, phage tail region protein complement(2377791..>2378213) Photorhabdus asymbiotica 8165884 YP_003040949.1 CDS rnb NC_012962.1 2379008 2380951 R Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II complement(2379008..2380951) Photorhabdus asymbiotica 8165885 YP_003040950.1 CDS nth NC_012962.1 2381087 2381725 R DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III complement(2381087..2381725) Photorhabdus asymbiotica 8164871 YP_003040951.1 CDS rnfE NC_012962.1 2381728 2382426 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit complement(2381728..2382426) Photorhabdus asymbiotica 8166938 YP_003040952.1 CDS rnfG NC_012962.1 2382423 2383052 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG complement(2382423..2383052) Photorhabdus asymbiotica 8164879 YP_003040953.1 CDS rnfD NC_012962.1 2383062 2384141 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD complement(2383062..2384141) Photorhabdus asymbiotica 8164880 YP_003040954.1 CDS rnfC NC_012962.1 2384154 2386274 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(2384154..2386274) Photorhabdus asymbiotica 8164878 YP_003040955.1 CDS rnfB NC_012962.1 2386267 2386884 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(2386267..2386884) Photorhabdus asymbiotica 8164877 YP_003040956.1 CDS rnfA NC_012962.1 2386884 2387465 R Na(+)-translocating NADH-quinone reductase subunit E complement(2386884..2387465) Photorhabdus asymbiotica 8164876 YP_003040957.1 CDS PAU_02121 NC_012962.1 2387574 2388014 R hypothetical protein complement(2387574..2388014) Photorhabdus asymbiotica 8164875 YP_003040958.1 CDS PAU_02122 NC_012962.1 2388201 2389238 D putative oxidoreductase 2388201..2389238 Photorhabdus asymbiotica 8165886 YP_003040959.1 CDS yfeH NC_012962.1 2389281 2390279 D hypothetical protein 2389281..2390279 Photorhabdus asymbiotica 8165887 YP_003040960.1 CDS PAU_02124 NC_012962.1 2391083 2392222 D hypothetical protein 2391083..2392222 Photorhabdus asymbiotica 8167861 YP_003040961.1 CDS PAU_02125 NC_012962.1 2392219 2394174 D hypothetical protein 2392219..2394174 Photorhabdus asymbiotica 8165888 YP_003040962.1 CDS PAU_02126 NC_012962.1 2394183 2395412 D hypothetical protein 2394183..2395412 Photorhabdus asymbiotica 8165889 YP_003040963.1 CDS waaV NC_012962.1 <2395409 2396335 D putative beta1,3-glucosyltransferase <2395409..2396335 Photorhabdus asymbiotica 8165890 YP_003040964.1 CDS PAU_02128 NC_012962.1 2396347 2397204 D putative glycosyl transferase 2396347..2397204 Photorhabdus asymbiotica 8168454 YP_003040965.1 CDS PAU_02129 NC_012962.1 2397206 2398291 D hypothetical protein 2397206..2398291 Photorhabdus asymbiotica 8165891 YP_003040966.1 CDS PAU_02130 NC_012962.1 2398306 2399997 D hypothetical protein 2398306..2399997 Photorhabdus asymbiotica 8165892 YP_003040967.1 CDS suhB NC_012962.1 2400004 2400789 D inositol-1-monophosphatase 2400004..2400789 Photorhabdus asymbiotica 8165893 YP_003040968.1 CDS kfoC NC_012962.1 2400801 2401664 D chondroitin synthase 2400801..2401664 Photorhabdus asymbiotica 8167697 YP_003040969.1 CDS yeeO NC_012962.1 2401661 2403004 D Multi antimicrobial extrusion protein MatE 2401661..2403004 Photorhabdus asymbiotica 8165065 YP_003040970.1 CDS PAU_02134 NC_012962.1 2403359 2403646 D hypothetical protein 2403359..2403646 Photorhabdus asymbiotica 8165457 YP_003040971.1 CDS PAU_02135 NC_012962.1 2403715 2404107 R hypothetical protein complement(2403715..2404107) Photorhabdus asymbiotica 8165894 YP_003040972.1 CDS tccZ NC_012962.1 2404267 2404668 R insecticidal toxin complex protein tccz (putative uncharacterize protein tccz) complement(2404267..2404668) Photorhabdus asymbiotica 8165895 YP_003040973.1 CDS PAU_02137 NC_012962.1 2405264 2405380 R hypothetical protein complement(2405264..2405380) Photorhabdus asymbiotica 8167479 YP_003040974.1 CDS PAU_02138 NC_012962.1 2405477 2405761 D hypothetical protein 2405477..2405761 Photorhabdus asymbiotica 8165896 YP_003040975.1 CDS PAU_02139 NC_012962.1 2406041 2406286 D Death-on-curing protein-(prevent host death phd) 2406041..2406286 Photorhabdus asymbiotica 8165897 YP_003040976.1 CDS PAU_02140 NC_012962.1 2406650 2406928 D hypothetical protein 2406650..2406928 Photorhabdus asymbiotica 8165898 YP_003040977.1 CDS PAU_02141 NC_012962.1 2406964 2407074 R hypothetical protein complement(2406964..2407074) Photorhabdus asymbiotica 8165899 YP_003040978.1 CDS PAU_02142 NC_012962.1 2407099 2407368 D hypothetical protein 2407099..2407368 Photorhabdus asymbiotica 8165900 YP_003040979.1 CDS PAU_02143 NC_012962.1 2407848 2408759 D hypothetical protein 2407848..2408759 Photorhabdus asymbiotica 8165901 YP_003040980.1 CDS PAU_02144 NC_012962.1 2408882 2409853 R Peptidase S58 complement(2408882..2409853) Photorhabdus asymbiotica 8166643 YP_003040981.1 CDS PAU_02145 NC_012962.1 2409964 2411283 R probable oxidoreductase complement(2409964..2411283) Photorhabdus asymbiotica 8166644 YP_003040982.1 CDS PAU_02146 NC_012962.1 2411286 2411540 R hypothetical protein complement(2411286..2411540) Photorhabdus asymbiotica 8166645 YP_003040983.1 CDS PAU_02147 NC_012962.1 2411556 2412674 R hypothetical protein complement(2411556..2412674) Photorhabdus asymbiotica 8166646 YP_003040984.1 CDS PAU_02148 NC_012962.1 2412671 2413621 R hypothetical protein complement(2412671..2413621) Photorhabdus asymbiotica 8166647 YP_003040985.1 CDS PAU_02149 NC_012962.1 2413634 2413798 R hypothetical protein complement(2413634..2413798) Photorhabdus asymbiotica 8166648 YP_003040986.1 CDS PAU_02150 NC_012962.1 2413876 2414004 D hypothetical protein 2413876..2414004 Photorhabdus asymbiotica 8166649 YP_003040987.1 CDS PAU_02151 NC_012962.1 2414269 2415126 D Transcriptional regulator, AraC 2414269..2415126 Photorhabdus asymbiotica 8166650 YP_003040988.1 CDS yjhH NC_012962.1 2415330 2416250 D dihydrodipicolinate synthetase 2415330..2416250 Photorhabdus asymbiotica 8166651 YP_003040989.1 CDS PAU_02153 NC_012962.1 2416292 2417875 D probable aldehyde dehydrogenase 2416292..2417875 Photorhabdus asymbiotica 8164984 YP_003040990.1 CDS PAU_02154 NC_012962.1 2417980 2419581 D putative amino-acid permease membrane protein 2417980..2419581 Photorhabdus asymbiotica 8166652 YP_003040991.1 CDS add NC_012962.1 2419641 2420642 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(2419641..2420642) Photorhabdus asymbiotica 8166653 YP_003040992.1 CDS ydgA NC_012962.1 2420720 2422270 R hypothetical protein complement(2420720..2422270) Photorhabdus asymbiotica 8166740 YP_003040993.1 CDS manA NC_012962.1 2422421 2423593 R mannose-6-phosphate isomerase complement(2422421..2423593) Photorhabdus asymbiotica 8165429 YP_003040994.1 CDS PAU_02158 NC_012962.1 2423733 2423891 D hypothetical protein 2423733..2423891 Photorhabdus asymbiotica 8168958 YP_003040995.1 CDS fumC NC_012962.1 2423997 2425391 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2423997..2425391 Photorhabdus asymbiotica 8166654 YP_003040996.1 CDS PAU_02160 NC_012962.1 2425533 2425811 D hypothetical protein 2425533..2425811 Photorhabdus asymbiotica 8168178 YP_003040997.1 CDS yddM NC_012962.1 2425811 2426125 D HTH transcriptional regulator 2425811..2426125 Photorhabdus asymbiotica 8166655 YP_003040998.1 CDS PAU_02162 NC_012962.1 2426251 2426730 R hypothetical protein complement(2426251..2426730) Photorhabdus asymbiotica 8165424 YP_003040999.1 CDS PAU_02163 NC_012962.1 2426727 2427176 R hypothetical protein complement(2426727..2427176) Photorhabdus asymbiotica 8166656 YP_003041000.1 CDS AMV258 NC_012962.1 2427441 2428010 D hypothetical protein 2427441..2428010 Photorhabdus asymbiotica 8166657 YP_003041001.1 CDS PAU_02165 NC_012962.1 2428147 2428518 D hypothetical protein 2428147..2428518 Photorhabdus asymbiotica 8166782 YP_003041002.1 CDS PAU_02166 NC_012962.1 2428604 2428777 R hypothetical protein complement(2428604..2428777) Photorhabdus asymbiotica 8166658 YP_003041003.1 CDS tus NC_012962.1 2428799 2429725 R binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein complement(2428799..2429725) Photorhabdus asymbiotica 8166659 YP_003041004.1 CDS PAU_02168 NC_012962.1 2429955 2431109 D hypothetical protein 2429955..2431109 Photorhabdus asymbiotica 8168378 YP_003041005.1 CDS argO NC_012962.1 2431093 2431710 D Lysine exporter protein 2431093..2431710 Photorhabdus asymbiotica 8166660 YP_003041006.1 CDS cbpD NC_012962.1 2431782 2432381 R Entomopoxviruses are a class of insect viruses whose virions are embedded in cytoplasmic occlusion bodies. The major component of these protective complexes is a protein called spheroidin/spindolin. Intermolecular disulphide bonds have been shown to play major roles in the formation and structure of these viral occlusion bodies some of which are spindle body proteins.; chitin-binding protein cbpd viral capsid complement(2431782..2432381) Photorhabdus asymbiotica 8165491 YP_003041007.1 CDS yjfI NC_012962.1 2433234 2433620 D hypothetical protein 2433234..2433620 Photorhabdus asymbiotica 8168543 YP_003041008.1 CDS yjfJ NC_012962.1 2433641 2434327 D hypothetical protein 2433641..2434327 Photorhabdus asymbiotica 8164976 YP_003041009.1 CDS PAU_02173 NC_012962.1 2434389 2435051 D hypothetical protein 2434389..2435051 Photorhabdus asymbiotica 8164977 YP_003041010.1 CDS yjfL NC_012962.1 2435052 2435489 D putative inner membrane protein yjfl 2435052..2435489 Photorhabdus asymbiotica 8166661 YP_003041011.1 CDS ygiB NC_012962.1 2435502 2436419 D hypothetical protein 2435502..2436419 Photorhabdus asymbiotica 8164978 YP_003041012.1 CDS ygiC NC_012962.1 2436571 2437737 D hypothetical protein 2436571..2437737 Photorhabdus asymbiotica 8167568 YP_003041013.1 CDS PAU_02177 NC_012962.1 2438029 2438307 D hypothetical protein 2438029..2438307 Photorhabdus asymbiotica 8167570 YP_003041014.1 CDS PAU_02178 NC_012962.1 2438304 2438855 D hypothetical protein 2438304..2438855 Photorhabdus asymbiotica 8166662 YP_003041015.1 CDS PAU_02179 NC_012962.1 2438974 2439666 R hypothetical protein complement(2438974..2439666) Photorhabdus asymbiotica 8166663 YP_003041016.1 CDS PAU_02180 NC_012962.1 2440269 2441528 R putative transport protein complement(2440269..2441528) Photorhabdus asymbiotica 8166664 YP_003041017.1 CDS ynfL NC_012962.1 2441655 2442569 D putative transcriptional regulator lysr-type 2441655..2442569 Photorhabdus asymbiotica 8166665 YP_003041018.1 CDS mlc NC_012962.1 2442699 2443910 D putative ROK-like transcriptional regulator 2442699..2443910 Photorhabdus asymbiotica 8165002 YP_003041019.1 CDS ynfK NC_012962.1 2444090 2444761 D putative dethiobiotin synthetase 2444090..2444761 Photorhabdus asymbiotica 8166333 YP_003041020.1 CDS PAU_02184 NC_012962.1 2444947 2445249 R hypothetical protein complement(2444947..2445249) Photorhabdus asymbiotica 8165001 YP_003041021.1 CDS ynfB NC_012962.1 2445249 2445611 R hypothetical protein complement(2445249..2445611) Photorhabdus asymbiotica 8166666 YP_003041022.1 CDS ydfG NC_012962.1 2445726 2446475 R NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase complement(2445726..2446475) Photorhabdus asymbiotica 8165000 YP_003041023.1 CDS PAU_02187 NC_012962.1 2446573 2448171 R histidine ammonia-lyase complement(2446573..2448171) Photorhabdus asymbiotica 8165428 YP_003041024.1 CDS PAU_02188 NC_012962.1 2448597 2450288 D exochitinase 2448597..2450288 Photorhabdus asymbiotica 8166667 YP_003041025.1 CDS PAU_02189 NC_012962.1 2450371 2451618 R hypothetical protein complement(2450371..2451618) Photorhabdus asymbiotica 8166668 YP_003041026.1 CDS PAU_02190 NC_012962.1 2452064 2452384 D hypothetical protein 2452064..2452384 Photorhabdus asymbiotica 8166669 YP_003041027.1 CDS PAU_02191 NC_012962.1 2452473 2452916 D hypothetical protein 2452473..2452916 Photorhabdus asymbiotica 8166670 YP_003041028.1 CDS PAU_02192 NC_012962.1 2453229 2453411 D hypothetical protein 2453229..2453411 Photorhabdus asymbiotica 8166671 YP_003041029.1 CDS PAU_02193 NC_012962.1 2453463 2453870 D hypothetical protein 2453463..2453870 Photorhabdus asymbiotica 8166672 YP_003041030.1 CDS arsA NC_012962.1 2454091 2455842 R arsenical pump-driving ATPase complement(2454091..2455842) Photorhabdus asymbiotica 8166673 YP_003041031.1 CDS arsD NC_012962.1 2455856 2456221 R arsenical resistance operon trans-acting repressor arsd complement(2455856..2456221) Photorhabdus asymbiotica 8165508 YP_003041032.1 CDS arsR NC_012962.1 2456272 2456607 R transcriptional repressor of chromosomal ars operon complement(2456272..2456607) Photorhabdus asymbiotica 8165509 YP_003041033.1 CDS PAU_02197 NC_012962.1 2456784 2458019 R membrane Secretion protein HlyD complement(2456784..2458019) Photorhabdus asymbiotica 8165510 YP_003041034.1 CDS PAU_02198 NC_012962.1 2458012 2459475 R putative outer membrane efflux protein complement(2458012..2459475) Photorhabdus asymbiotica 8166674 YP_003041035.1 CDS macB NC_012962.1 2459468 2460676 R macrolide export ATP-binding/permease protein complement(2459468..2460676) Photorhabdus asymbiotica 8166675 YP_003041036.1 CDS PAU_02200 NC_012962.1 2460669 2461406 R ABC transporter ATP-binding protein complement(2460669..2461406) Photorhabdus asymbiotica 8168946 YP_003041037.1 CDS PAU_02201 NC_012962.1 2461800 2462066 D hypothetical protein 2461800..2462066 Photorhabdus asymbiotica 8166676 YP_003041038.1 CDS PAU_02202 NC_012962.1 2462647 2463129 R hypothetical protein complement(2462647..2463129) Photorhabdus asymbiotica 8166677 YP_003041039.1 CDS PAU_02203 NC_012962.1 2463287 2464459 R d-aminopeptidase complement(2463287..2464459) Photorhabdus asymbiotica 8166678 YP_003041040.1 CDS ydjJ NC_012962.1 2464727 2465755 D hypothetical protein 2464727..2465755 Photorhabdus asymbiotica 8166679 YP_003041041.1 CDS PAU_02205 NC_012962.1 2465782 2466720 R transcriptional regulator, arac family with amidase-like domain complement(2465782..2466720) Photorhabdus asymbiotica 8165439 YP_003041042.1 CDS PAU_02206 NC_012962.1 2466818 2467498 D Transcriptional regulator, AraC family 2466818..2467498 Photorhabdus asymbiotica 8166680 YP_003041043.1 CDS PAU_02207 NC_012962.1 2467711 2468697 D hypothetical protein 2467711..2468697 Photorhabdus asymbiotica 8166681 YP_003041044.1 CDS PAU_02208 NC_012962.1 2468828 2470159 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(2468828..2470159) Photorhabdus asymbiotica 8166682 YP_003041045.1 CDS PAU_02209 NC_012962.1 2470397 2470780 R hypothetical protein complement(2470397..2470780) Photorhabdus asymbiotica 8166683 YP_003041046.1 CDS abu-6 NC_012962.1 2471291 2471719 R hypothetical protein complement(2471291..2471719) Photorhabdus asymbiotica 8166684 YP_003041047.1 CDS hdc NC_012962.1 2472100 2473662 D histidine decarboxylase (fragment) 2472100..2473662 Photorhabdus asymbiotica 8165261 YP_003041048.1 CDS PAU_02212 NC_012962.1 2473878 2474126 R transcriptional regulator complement(2473878..2474126) Photorhabdus asymbiotica 8169286 YP_003041049.1 CDS PAU_02213 NC_012962.1 2474200 2475444 R hypothetical protein complement(2474200..2475444) Photorhabdus asymbiotica 8166685 YP_003041050.1 CDS PAU_02214 NC_012962.1 2475640 2476866 R probable major facilitator superfamily (mfs) transporter complement(2475640..2476866) Photorhabdus asymbiotica 8166686 YP_003041051.1 CDS PAU_02215 NC_012962.1 2476863 2477816 R hypothetical protein complement(2476863..2477816) Photorhabdus asymbiotica 8166687 YP_003041052.1 CDS PAU_02216 NC_012962.1 2477842 2481693 R similar to proteins involved in antibiotic biosynthesis complement(2477842..2481693) Photorhabdus asymbiotica 8166688 YP_003041053.1 CDS irp1/HMWP1 NC_012962.1 2481724 2485992 R putative peptide/polyketide synthetase complement(2481724..2485992) Photorhabdus asymbiotica 8166689 YP_003041054.1 CDS syrE NC_012962.1 2485976 2492065 R similar to syringomycin synthetase; syringomycin synthetase complement(2485976..2492065) Photorhabdus asymbiotica 8165021 YP_003041055.1 CDS PAU_02219 NC_012962.1 2492147 2492686 R hypothetical protein complement(2492147..2492686) Photorhabdus asymbiotica 8167462 YP_003041056.1 CDS cfa8A NC_012962.1 2492706 2493131 R hypothetical protein complement(2492706..2493131) Photorhabdus asymbiotica 8166690 YP_003041057.1 CDS sypC2 NC_012962.1 2494055 2499862 R syringopeptin synthetase; syringopeptin synthetase c complement(2494055..2499862) Photorhabdus asymbiotica 8168555 YP_003041058.1 CDS pab NC_012962.1 2500067 2500945 R phenazine biosynthesis protein, phzf family complement(2500067..2500945) Photorhabdus asymbiotica 8167460 YP_003041059.1 CDS PAU_02223 NC_012962.1 2501285 2501866 R hypothetical protein complement(2501285..2501866) Photorhabdus asymbiotica 8165630 YP_003041060.1 CDS slyA NC_012962.1 2502416 2502859 D probable transcriptional regulator, marr family 2502416..2502859 Photorhabdus asymbiotica 8166691 YP_003041061.1 CDS PAU_02225 NC_012962.1 2503165 2504670 D acetyl-CoA carboxylase alpha subunit 2503165..2504670 Photorhabdus asymbiotica 8167651 YP_003041062.1 CDS PAU_02226 NC_012962.1 2504684 2505919 D probable hydroxymethylglutaryl-CoA reductase 2504684..2505919 Photorhabdus asymbiotica 8166692 YP_003041063.1 CDS PAU_02227 NC_012962.1 2505916 2507388 D acetyl-coa carboxylase, biotin carboxylase 2505916..2507388 Photorhabdus asymbiotica 8166693 YP_003041064.1 CDS PAU_02228 NC_012962.1 2507454 2508041 D propionyl-coa carboxylase 2507454..2508041 Photorhabdus asymbiotica 8166694 YP_003041065.1 CDS PAU_02229 NC_012962.1 2508038 2509429 D hypothetical protein 2508038..2509429 Photorhabdus asymbiotica 8166695 YP_003041066.1 CDS PAU_02230 NC_012962.1 2509976 2518849 R putative insecticidal toxin complement(2509976..2518849) Photorhabdus asymbiotica 8166696 YP_003041067.1 CDS PAU_02231 NC_012962.1 2519005 2519934 R hypothetical protein complement(2519005..2519934) Photorhabdus asymbiotica 8166697 YP_003041068.1 CDS PAU_02232 NC_012962.1 2519961 2522072 R hypothetical protein complement(2519961..2522072) Photorhabdus asymbiotica 8166698 YP_003041069.1 CDS PAU_02233 NC_012962.1 2522100 2523554 R hypothetical protein complement(2522100..2523554) Photorhabdus asymbiotica 8166699 YP_003041070.1 CDS PAU_02234 NC_012962.1 2523761 2524549 R hypothetical protein complement(2523761..2524549) Photorhabdus asymbiotica 8166700 YP_003041071.1 CDS PAU_02235 NC_012962.1 2524667 2527015 R hypothetical protein complement(2524667..2527015) Photorhabdus asymbiotica 8166701 YP_003041072.1 CDS PAU_02236 NC_012962.1 2527223 2527876 R Adenoviral fiber protein complement(2527223..2527876) Photorhabdus asymbiotica 8166702 YP_003041073.1 CDS PAU_02237 NC_012962.1 2527920 2530784 R hypothetical protein complement(2527920..2530784) Photorhabdus asymbiotica 8166703 YP_003041074.1 CDS afp11 NC_012962.1 2530781 2532580 R hypothetical protein complement(2530781..2532580) Photorhabdus asymbiotica 8166704 YP_003041075.1 CDS afp10 NC_012962.1 2532633 2533058 R hypothetical protein complement(2532633..2533058) Photorhabdus asymbiotica 8166748 YP_003041076.1 CDS PAU_02240 NC_012962.1 2533055 2533501 R bacteriophage base plate protein gp25 complement(2533055..2533501) Photorhabdus asymbiotica 8166746 YP_003041077.1 CDS PAU_02241 NC_012962.1 2533501 2535057 R hypothetical protein complement(2533501..2535057) Photorhabdus asymbiotica 8166705 YP_003041078.1 CDS PAU_02242 NC_012962.1 2535054 2535737 R hypothetical protein complement(2535054..2535737) Photorhabdus asymbiotica 8166706 YP_003041079.1 CDS PAU_02243 NC_012962.1 2535734 2535916 R hypothetical protein complement(2535734..2535916) Photorhabdus asymbiotica 8166707 YP_003041080.1 CDS PAU_02244 NC_012962.1 2535913 2536383 R putative conserved hypothetical phage tail region protein; hypothetical protein complement(2535913..2536383) Photorhabdus asymbiotica 8166708 YP_003041081.1 CDS PAU_02245 NC_012962.1 2536401 2537567 R phage tail sheath protein, putative complement(2536401..2537567) Photorhabdus asymbiotica 8166709 YP_003041082.1 CDS PAU_02246 NC_012962.1 2537875 2539248 R phage tail sheath protein fi-like complement(2537875..2539248) Photorhabdus asymbiotica 8166710 YP_003041083.1 CDS PAU_02247 NC_012962.1 2539274 2539723 R hypothetical protein complement(2539274..2539723) Photorhabdus asymbiotica 8166711 YP_003041084.1 CDS PAU_02248 NC_012962.1 2539815 2539931 R hypothetical protein complement(2539815..2539931) Photorhabdus asymbiotica 8166712 YP_003041085.1 CDS PAU_02249 NC_012962.1 2539931 2541496 R hypothetical protein complement(2539931..2541496) Photorhabdus asymbiotica 8166713 YP_003041086.1 CDS PAU_02250 NC_012962.1 2542106 2542252 D hypothetical protein 2542106..2542252 Photorhabdus asymbiotica 8166714 YP_003041087.1 CDS ygfI NC_012962.1 2542637 2543518 D putative lysr-family transcriptional regulatory protein 2542637..2543518 Photorhabdus asymbiotica 8166715 YP_003041088.1 CDS PAU_02252 NC_012962.1 2544117 2547629 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(2544117..2547629) Photorhabdus asymbiotica 8167561 YP_003041089.1 CDS PAU_02253 NC_012962.1 2547674 2547907 R hypothetical protein complement(2547674..2547907) Photorhabdus asymbiotica 8166716 YP_003041090.1 CDS PAU_02254 NC_012962.1 2547907 2549589 R putative oxygenase complement(2547907..2549589) Photorhabdus asymbiotica 8166717 YP_003041091.1 CDS PAU_02255 NC_012962.1 2549934 2550905 D hypothetical protein 2549934..2550905 Photorhabdus asymbiotica 8166718 YP_003041092.1 CDS PAU_02256 NC_012962.1 2551099 2552214 R putative oxidoreductase complement(2551099..2552214) Photorhabdus asymbiotica 8166719 YP_003041093.1 CDS PAU_02257 NC_012962.1 2552375 2553178 R putative 3-oxoacyl-(acyl-carrier-protein) reductase complement(2552375..2553178) Photorhabdus asymbiotica 8166720 YP_003041094.1 CDS PAU_02258 NC_012962.1 2553221 2554789 R major facilitator superfamily mfs_1 precursor complement(2553221..2554789) Photorhabdus asymbiotica 8166721 YP_003041095.1 CDS PAU_02259 NC_012962.1 2555508 2555981 D hypothetical protein 2555508..2555981 Photorhabdus asymbiotica 8166722 YP_003041096.1 CDS PAU_02260 NC_012962.1 2556651 2556767 D hypothetical protein 2556651..2556767 Photorhabdus asymbiotica 8166723 YP_003041097.1 CDS PAU_02261 NC_012962.1 2557115 2557588 D hypothetical protein 2557115..2557588 Photorhabdus asymbiotica 8168998 YP_003041098.1 CDS wbmC NC_012962.1 2557570 2559507 D hypothetical protein 2557570..2559507 Photorhabdus asymbiotica 8166066 YP_003041099.1 CDS PAU_02263 NC_012962.1 2559527 2561293 D abc transporter, atp-binding protein, hlyb family 2559527..2561293 Photorhabdus asymbiotica 8168479 YP_003041100.1 CDS pa-1L NC_012962.1 2562246 2562620 D members of this family are similar to the galactophilic lectin-1 expressed by P. aeruginosa ((PA-IL, ). Lectins recognising specific carbohydrates found on the surface of host cells are known to be involved in the initiation of infections by this organism.; pa-i galactophilic lectin-like protein 2562246..2562620 Photorhabdus asymbiotica 8166232 YP_003041101.1 CDS pvpS NC_012962.1 2562823 2566383 R pvp sensor (virulence sensor protein bvgs) complement(2562823..2566383) Photorhabdus asymbiotica 8165626 YP_003041102.1 CDS pvpR NC_012962.1 2566435 2567061 R pvp response regulator (two-component response regulator bvg protein) complement(2566435..2567061) Photorhabdus asymbiotica 8165116 YP_003041103.1 CDS PAU_02267 NC_012962.1 2567079 2568338 R hypothetical transmembrane secreted protein complement(2567079..2568338) Photorhabdus asymbiotica 8165115 YP_003041104.1 CDS PAU_02268 NC_012962.1 2568403 2570973 R ClpA/B-type chaperone complement(2568403..2570973) Photorhabdus asymbiotica 8166233 YP_003041105.1 CDS PAU_02269 NC_012962.1 2570966 2574466 R hypothetical protein complement(2570966..2574466) Photorhabdus asymbiotica 8166234 YP_003041106.1 CDS PAU_02270 NC_012962.1 2574482 2575105 R putative transmembrane protein complement(2574482..2575105) Photorhabdus asymbiotica 8166235 YP_003041107.1 CDS PAU_02271 NC_012962.1 2575102 2576499 R hypothetical protein complement(2575102..2576499) Photorhabdus asymbiotica 8166236 YP_003041108.1 CDS PAU_02272 NC_012962.1 2576505 2577164 R hypothetical protein complement(2576505..2577164) Photorhabdus asymbiotica 8166237 YP_003041109.1 CDS PAU_02273 NC_012962.1 2577154 2578272 R putative inner membrane protein complement(2577154..2578272) Photorhabdus asymbiotica 8166238 YP_003041110.1 CDS PAU_02274 NC_012962.1 2578265 2578567 R hypothetical protein complement(2578265..2578567) Photorhabdus asymbiotica 8166239 YP_003041111.1 CDS PAU_02275 NC_012962.1 2578564 2579160 R hypothetical protein complement(2578564..2579160) Photorhabdus asymbiotica 8166240 YP_003041112.1 CDS PAU_02276 NC_012962.1 2579195 2581201 R hypothetical protein complement(2579195..2581201) Photorhabdus asymbiotica 8166241 YP_003041113.1 CDS PAU_02277 NC_012962.1 2581224 2582186 R hypothetical protein complement(2581224..2582186) Photorhabdus asymbiotica 8166242 YP_003041114.1 CDS PAU_02278 NC_012962.1 2582177 2583988 R hypothetical protein complement(2582177..2583988) Photorhabdus asymbiotica 8166243 YP_003041115.1 CDS PAU_02279 NC_012962.1 2583990 2584433 R hypothetical protein complement(2583990..2584433) Photorhabdus asymbiotica 8166244 YP_003041116.1 CDS PAU_02280 NC_012962.1 2584491 2584985 R hypothetical protein complement(2584491..2584985) Photorhabdus asymbiotica 8166245 YP_003041117.1 CDS PAU_02281 NC_012962.1 2585049 2586530 R hypothetical protein complement(2585049..2586530) Photorhabdus asymbiotica 8166246 YP_003041118.1 CDS PAU_02282 NC_012962.1 2586538 2587089 R hypothetical protein complement(2586538..2587089) Photorhabdus asymbiotica 8166247 YP_003041119.1 CDS PAU_02283 NC_012962.1 2587756 2589015 R putative tail fiber protein from prophage cp-933h complement(2587756..2589015) Photorhabdus asymbiotica 8166248 YP_003041120.1 CDS PAU_02284 NC_012962.1 2589146 2589769 R putative tail fiber protein of prophage complement(2589146..2589769) Photorhabdus asymbiotica 8166249 YP_003041121.1 CDS Sc/SvQ NC_012962.1 2589772 2590722 R sc/svq protein complement(2589772..2590722) Photorhabdus asymbiotica 8166250 YP_003041122.1 CDS PAU_02286 NC_012962.1 2591046 2591669 R tail fiber assembly protein homolog from lambdoid prophage e14 complement(2591046..2591669) Photorhabdus asymbiotica 8167183 YP_003041123.1 CDS Sc/SvQ NC_012962.1 2591672 2592688 R putative tail fiber protein complement(2591672..2592688) Photorhabdus asymbiotica 8166251 YP_003041124.1 CDS PAU_02288 NC_012962.1 2593887 2602796 D filamentous haemagglutinin/hemolysin family of adhesins; putative adhesin/hemagglutinin/hemolysin 2593887..2602796 Photorhabdus asymbiotica 8167184 YP_003041125.1 CDS fhaB2 NC_012962.1 2603072 2603752 D hypothetical protein 2603072..2603752 Photorhabdus asymbiotica 8166252 YP_003041126.1 CDS PAU_02290 NC_012962.1 2604075 2604488 D hypothetical protein 2604075..2604488 Photorhabdus asymbiotica 8166537 YP_003041127.1 CDS PAU_02291 NC_012962.1 2604517 2604609 D hypothetical protein 2604517..2604609 Photorhabdus asymbiotica 8166253 YP_003041128.1 CDS stbB NC_012962.1 2604740 2604835 R plasmid stability-like protein; hypothetical protein complement(2604740..2604835) Photorhabdus asymbiotica 8166254 YP_003041129.1 CDS PAU_02293 NC_012962.1 2604832 2605098 R Prevent host death - Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost.; hypothetical protein complement(2604832..2605098) Photorhabdus asymbiotica 8167683 YP_003041130.1 CDS blaA NC_012962.1 2605169 2606068 R Beta-lactamase catalyses the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; ctx-m type extended-spectrum beta-lactamase complement(2605169..2606068) Photorhabdus asymbiotica 8166255 YP_003041131.1 CDS PAU_02295 NC_012962.1 2606130 2606285 D hypothetical protein 2606130..2606285 Photorhabdus asymbiotica 8165569 YP_003041132.1 CDS PAU_02296 NC_012962.1 2606709 2608562 D It has been suggested that the internally repeated domain of haemolysin may be involved in Ca-mediated binding to erythrocytes.; secreted hemolysin-type calcium-binding bacteriocin, putative 2606709..2608562 Photorhabdus asymbiotica 8166256 YP_003041133.1 CDS PAU_02297 NC_012962.1 2608665 2609705 R transcriptional regulator, arac family complement(2608665..2609705) Photorhabdus asymbiotica 8166257 YP_003041134.1 CDS PAU_02298 NC_012962.1 2609946 2611949 D pesticin receptorFuyA 2609946..2611949 Photorhabdus asymbiotica 8166258 YP_003041135.1 CDS ybtX NC_012962.1 2611946 2613193 D putative cytoplasmic transmembrane protein 2611946..2613193 Photorhabdus asymbiotica 8166259 YP_003041136.1 CDS ybtP NC_012962.1 2613183 2614982 D putative inner membrane abc-transporter 2613183..2614982 Photorhabdus asymbiotica 8166604 YP_003041137.1 CDS ybtP NC_012962.1 2614969 2616720 D putative inner membrane abc-transporter 2614969..2616720 Photorhabdus asymbiotica 8166602 YP_003041138.1 CDS PAU_02302 NC_012962.1 2616773 2622868 D similar to hmwp2 protein of yersinia enterocolitica; hypothetical protein 2616773..2622868 Photorhabdus asymbiotica 8166603 YP_003041139.1 CDS irp1/HMWP1 NC_012962.1 2622865 2634618 D putative peptide/polyketide synthetase 2622865..2634618 Photorhabdus asymbiotica 8166260 YP_003041140.1 CDS PAU_02304 NC_012962.1 2634615 2635709 D hypothetical protein 2634615..2635709 Photorhabdus asymbiotica 8165022 YP_003041141.1 CDS irp4 NC_012962.1 2635709 2636515 D yersiniabactin synthetase, thioesterase component 2635709..2636515 Photorhabdus asymbiotica 8166261 YP_003041142.1 CDS ybtE NC_012962.1 2636515 2639451 D yersiniabactin siderophore biosynthetic protein 2636515..2639451 Photorhabdus asymbiotica 8165023 YP_003041143.1 CDS PAU_02307 NC_012962.1 2639782 2640945 D similar to oxalate decarboxylase; hypothetical protein 2639782..2640945 Photorhabdus asymbiotica 8166601 YP_003041144.1 CDS PAU_02308 NC_012962.1 2640942 2641232 D hypothetical protein 2640942..2641232 Photorhabdus asymbiotica 8166262 YP_003041145.1 CDS PAU_02309 NC_012962.1 2642222 2643340 R hypothetical protein complement(2642222..2643340) Photorhabdus asymbiotica 8166263 YP_003041146.1 CDS PAU_02310 NC_012962.1 2643333 2644943 R hypothetical protein complement(2643333..2644943) Photorhabdus asymbiotica 8166264 YP_003041147.1 CDS PAU_02311 NC_012962.1 2644947 2647472 R hypothetical protein complement(2644947..2647472) Photorhabdus asymbiotica 8166265 YP_003041148.1 CDS PAU_02312 NC_012962.1 2648526 2651891 R hypothetical protein complement(2648526..2651891) Photorhabdus asymbiotica 8166266 YP_003041149.1 CDS PAU_02313 NC_012962.1 2651888 2653015 R hypothetical protein complement(2651888..2653015) Photorhabdus asymbiotica 8166267 YP_003041150.1 CDS PAU_02314 NC_012962.1 2653012 2653191 R hypothetical protein complement(2653012..2653191) Photorhabdus asymbiotica 8166268 YP_003041151.1 CDS PAU_02315 NC_012962.1 2653289 2653516 R hypothetical protein complement(2653289..2653516) Photorhabdus asymbiotica 8166269 YP_003041152.1 CDS PAU_02316 NC_012962.1 2653725 2654813 R hypothetical protein complement(2653725..2654813) Photorhabdus asymbiotica 8166270 YP_003041153.1 CDS PAU_02317 NC_012962.1 2654905 2655990 R hypothetical protein complement(2654905..2655990) Photorhabdus asymbiotica 8166271 YP_003041154.1 CDS PAU_02318 NC_012962.1 2656082 2657161 R hypothetical protein complement(2656082..2657161) Photorhabdus asymbiotica 8166272 YP_003041155.1 CDS PAU_02319 NC_012962.1 2657154 2658764 R hypothetical protein complement(2657154..2658764) Photorhabdus asymbiotica 8166273 YP_003041156.1 CDS PAU_02320 NC_012962.1 2658768 2661296 R hypothetical protein complement(2658768..2661296) Photorhabdus asymbiotica 8166274 YP_003041157.1 CDS PAU_02321 NC_012962.1 2661310 2661606 R hypothetical protein complement(2661310..2661606) Photorhabdus asymbiotica 8166275 YP_003041158.1 CDS PAU_02322 NC_012962.1 2661888 2662082 D hypothetical protein 2661888..2662082 Photorhabdus asymbiotica 8166276 YP_003041159.1 CDS PAU_02323 NC_012962.1 2663032 2663910 R hypothetical protein complement(2663032..2663910) Photorhabdus asymbiotica 8166277 YP_003041160.1 CDS mclB NC_012962.1 2663921 2664775 R toxin secretion; putative microcin l transport protein complement(2663921..2664775) Photorhabdus asymbiotica 8166278 YP_003041161.1 CDS mtfA NC_012962.1 2664772 2665743 R hypothetical protein complement(2664772..2665743) Photorhabdus asymbiotica 8168972 YP_003041162.1 CDS aco NC_012962.1 2666073 2667836 R hypothetical protein complement(2666073..2667836) Photorhabdus asymbiotica 8166390 YP_003041163.1 CDS PAU_02327 NC_012962.1 2668455 2668772 D hypothetical protein 2668455..2668772 Photorhabdus asymbiotica 8166734 YP_003041164.1 CDS PAU_02328 NC_012962.1 2669093 2669419 D hypothetical protein 2669093..2669419 Photorhabdus asymbiotica 8166279 YP_003041165.1 CDS osmC NC_012962.1 2669540 2669980 R hypothetical protein complement(2669540..2669980) Photorhabdus asymbiotica 8166280 YP_003041166.1 CDS PAU_02330 NC_012962.1 2670219 2671427 R tyrosine-specific transport system protein complement(2670219..2671427) Photorhabdus asymbiotica 8165621 YP_003041167.1 CDS PAU_02331 NC_012962.1 2671473 2673419 R hypothetical protein complement(2671473..2673419) Photorhabdus asymbiotica 8166281 YP_003041168.1 CDS PAU_02332 NC_012962.1 2673848 2674864 R hypothetical protein complement(2673848..2674864) Photorhabdus asymbiotica 8166282 YP_003041169.1 CDS PAU_02333 NC_012962.1 2675237 2675920 D hypothetical protein 2675237..2675920 Photorhabdus asymbiotica 8166283 YP_003041170.1 CDS PAU_02334 NC_012962.1 2676210 2678591 R hypothetical protein complement(2676210..2678591) Photorhabdus asymbiotica 8166284 YP_003041171.1 CDS PAU_02335 NC_012962.1 2678652 2678783 R hypothetical protein complement(2678652..2678783) Photorhabdus asymbiotica 8166285 YP_003041172.1 CDS PAU_02336 NC_012962.1 2678861 >2681215 R putative anaerobic dimethylsulfoxide reductase complement(2678861..>2681215) Photorhabdus asymbiotica 8166286 YP_003041173.1 CDS dppA NC_012962.1 2681825 2683432 D periplasmic oligopeptide-binding protein precursor 2681825..2683432 Photorhabdus asymbiotica 8166287 YP_003041174.1 CDS PAU_02338 NC_012962.1 2684644 2685267 D hypothetical protein 2684644..2685267 Photorhabdus asymbiotica 8168642 YP_003041175.1 CDS PAU_02339 NC_012962.1 2685417 2686169 R hypothetical protein complement(2685417..2686169) Photorhabdus asymbiotica 8166288 YP_003041176.1 CDS PAU_02340 NC_012962.1 2686157 2686303 R hypothetical protein complement(2686157..2686303) Photorhabdus asymbiotica 8166289 YP_003041177.1 CDS PAU_02341 NC_012962.1 2686303 2686542 R hypothetical protein complement(2686303..2686542) Photorhabdus asymbiotica 8166290 YP_003041178.1 CDS oppA NC_012962.1 2686922 2688532 D periplasmic oligopeptide-binding protein 2686922..2688532 Photorhabdus asymbiotica 8166291 YP_003041179.1 CDS PAU_02343 NC_012962.1 2689184 2689474 D hypothetical protein 2689184..2689474 Photorhabdus asymbiotica 8165578 YP_003041180.1 CDS PAU_02344 NC_012962.1 2689586 2690614 R hypothetical protein complement(2689586..2690614) Photorhabdus asymbiotica 8166292 YP_003041181.1 CDS PAU_02345 NC_012962.1 2690607 2692292 R hypothetical protein complement(2690607..2692292) Photorhabdus asymbiotica 8166293 YP_003041182.1 CDS ribA NC_012962.1 2692305 2692901 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(2692305..2692901) Photorhabdus asymbiotica 8166294 YP_003041183.1 CDS PAU_02347 NC_012962.1 2692947 2693546 R hypothetical protein complement(2692947..2693546) Photorhabdus asymbiotica 8165179 YP_003041184.1 CDS PAU_02348 NC_012962.1 2693556 2694326 R hypothetical protein complement(2693556..2694326) Photorhabdus asymbiotica 8166295 YP_003041185.1 CDS PAU_02349 NC_012962.1 2694319 2695071 R ABC transporter integral membrane protein complement(2694319..2695071) Photorhabdus asymbiotica 8166296 YP_003041186.1 CDS PAU_02350 NC_012962.1 2695061 2695825 R ABC transporter ATP-binding protein complement(2695061..2695825) Photorhabdus asymbiotica 8166297 YP_003041187.1 CDS PAU_02351 NC_012962.1 2695827 2697605 R hypothetical protein complement(2695827..2697605) Photorhabdus asymbiotica 8166298 YP_003041188.1 CDS hcaD NC_012962.1 2698280 2699449 R phenylpropionate dioxygenase ferredoxin reductase subunit complement(2698280..2699449) Photorhabdus asymbiotica 8166299 YP_003041189.1 CDS mhpB NC_012962.1 2699463 2700407 R catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family; 3-(2,3-dihydroxyphenyl)propionate dioxygenase complement(2699463..2700407) Photorhabdus asymbiotica 8169279 YP_003041190.1 CDS hcaB NC_012962.1 2700397 2701239 R Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase complement(2700397..2701239) Photorhabdus asymbiotica 8166324 YP_003041191.1 CDS hcaC NC_012962.1 2701242 2701556 R 3-phenylpropionate dioxygenase ferredoxin subunit complement(2701242..2701556) Photorhabdus asymbiotica 8169277 YP_003041192.1 CDS hcaF NC_012962.1 2701556 2702098 R 3-phenylpropionate dioxygenase subunit beta complement(2701556..2702098) Photorhabdus asymbiotica 8169278 YP_003041193.1 CDS hcaE NC_012962.1 2702095 2703456 R 3-phenylpropionate dioxygenase alpha subunit (digoxigenin alph subunit) complement(2702095..2703456) Photorhabdus asymbiotica 8169281 YP_003041194.1 CDS hcaR NC_012962.1 2703593 2704471 D activator of 3-phenylpropionic acid catabolism; DNA-binding transcriptional regulator HcaR 2703593..2704471 Photorhabdus asymbiotica 8169280 YP_003041195.1 CDS ohpC NC_012962.1 2704587 2705486 D hypothetical protein 2704587..2705486 Photorhabdus asymbiotica 8169282 YP_003041196.1 CDS mhpD NC_012962.1 2705556 2706338 D 2-keto-4-pentenoate hydratase 2705556..2706338 Photorhabdus asymbiotica 8168112 YP_003041197.1 CDS PAU_02361 NC_012962.1 2706509 2707450 R hypothetical protein complement(2706509..2707450) Photorhabdus asymbiotica 8166325 YP_003041198.1 CDS PAU_02362 NC_012962.1 2707657 2711511 R hypothetical protein complement(2707657..2711511) Photorhabdus asymbiotica 8166300 YP_003041199.1 CDS PAU_02363 NC_012962.1 2711854 2712255 R hypothetical protein complement(2711854..2712255) Photorhabdus asymbiotica 8166301 YP_003041200.1 CDS PAU_02364 NC_012962.1 2712294 2713472 R hypothetical protein complement(2712294..2713472) Photorhabdus asymbiotica 8166302 YP_003041201.1 CDS PAU_02365 NC_012962.1 2713502 2713939 R hypothetical protein complement(2713502..2713939) Photorhabdus asymbiotica 8166303 YP_003041202.1 CDS PAU_02366 NC_012962.1 2713939 2714415 R hypothetical protein complement(2713939..2714415) Photorhabdus asymbiotica 8166304 YP_003041203.1 CDS PAU_02367 NC_012962.1 2714412 2715080 R hypothetical protein complement(2714412..2715080) Photorhabdus asymbiotica 8166305 YP_003041204.1 CDS PAU_02368 NC_012962.1 2715130 2715354 R 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase complement(2715130..2715354) Photorhabdus asymbiotica 8166306 YP_003041205.1 CDS PAU_02369 NC_012962.1 2715526 2716182 R hypothetical protein complement(2715526..2716182) Photorhabdus asymbiotica 8166307 YP_003041206.1 CDS PAU_02370 NC_012962.1 2716195 2716317 R hypothetical protein complement(2716195..2716317) Photorhabdus asymbiotica 8166308 YP_003041207.1 CDS fnr NC_012962.1 2717097 2717852 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2717097..2717852 Photorhabdus asymbiotica 8166309 YP_003041208.1 CDS uspE NC_012962.1 2717980 2718924 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2717980..2718924 Photorhabdus asymbiotica 8168137 YP_003041209.1 CDS PAU_02373 NC_012962.1 2719217 2719756 D ubiquinone/menaquinone biosynthesis methyltransferase 2719217..2719756 Photorhabdus asymbiotica 8168427 YP_003041210.1 CDS PAU_02374 NC_012962.1 2719731 2720183 R hypothetical protein complement(2719731..2720183) Photorhabdus asymbiotica 8166310 YP_003041211.1 CDS ureD NC_012962.1 2720450 2721415 R urease accessory protein complement(2720450..2721415) Photorhabdus asymbiotica 8166311 YP_003041212.1 CDS ureG NC_012962.1 2721412 2722047 R urease accessory protein ureg complement(2721412..2722047) Photorhabdus asymbiotica 8168417 YP_003041213.1 CDS ureF NC_012962.1 2722100 2722786 R Urease accesory protein uref complement(2722100..2722786) Photorhabdus asymbiotica 8168420 YP_003041214.1 CDS ureE NC_012962.1 2722783 2723379 R urease accessory protein complement(2722783..2723379) Photorhabdus asymbiotica 8168419 YP_003041215.1 CDS ureC NC_012962.1 2723431 2725197 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(2723431..2725197) Photorhabdus asymbiotica 8168418 YP_003041216.1 CDS ureB NC_012962.1 2725224 2725610 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); urease subunit beta complement(2725224..2725610) Photorhabdus asymbiotica 8168416 YP_003041217.1 CDS ureA NC_012962.1 2725693 2725995 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(2725693..2725995) Photorhabdus asymbiotica 8168415 YP_003041218.1 CDS PAU_02382 NC_012962.1 2726303 2727316 D putative nickel transport protein 2726303..2727316 Photorhabdus asymbiotica 8168414 YP_003041219.1 CDS PAU_02383 NC_012962.1 2727340 2727459 D hypothetical protein 2727340..2727459 Photorhabdus asymbiotica 8166312 YP_003041220.1 CDS PAU_02384 NC_012962.1 2727539 2727691 D hypothetical protein 2727539..2727691 Photorhabdus asymbiotica 8167209 YP_003041221.1 CDS PAU_02385 NC_012962.1 2727688 2727969 D hypothetical protein 2727688..2727969 Photorhabdus asymbiotica 8167373 YP_003041222.1 CDS PAU_02386 NC_012962.1 2727973 2728983 R hypothetical protein complement(2727973..2728983) Photorhabdus asymbiotica 8167374 YP_003041223.1 CDS PAU_02387 NC_012962.1 2729063 2729602 R hypothetical protein complement(2729063..2729602) Photorhabdus asymbiotica 8167375 YP_003041224.1 CDS PAU_02388 NC_012962.1 2729633 2730403 R hypothetical protein complement(2729633..2730403) Photorhabdus asymbiotica 8167376 YP_003041225.1 CDS PAU_02389 NC_012962.1 2730443 2730931 R hypothetical protein complement(2730443..2730931) Photorhabdus asymbiotica 8167377 YP_003041226.1 CDS tiorf56 NC_012962.1 2730928 2731935 R hypothetical protein complement(2730928..2731935) Photorhabdus asymbiotica 8167378 YP_003041227.1 CDS PAU_02391 NC_012962.1 2731928 2732902 R hypothetical protein complement(2731928..2732902) Photorhabdus asymbiotica 8167510 YP_003041228.1 CDS PAU_02392 NC_012962.1 2732906 2734141 R hypothetical protein complement(2732906..2734141) Photorhabdus asymbiotica 8167379 YP_003041229.1 CDS mat NC_012962.1 2734135 2735334 R S-adenosylmethionine synthetase complement(2734135..2735334) Photorhabdus asymbiotica 8167380 YP_003041230.1 CDS nol NC_012962.1 2735338 2737308 R hypothetical protein complement(2735338..2737308) Photorhabdus asymbiotica 8168964 YP_003041231.1 CDS PAU_02395 NC_012962.1 2737377 2738108 R 5'-nucleotidase SurE (nucleoside 5'-monophosphate phosphohydrolase) complement(2737377..2738108) Photorhabdus asymbiotica 8166928 YP_003041232.1 CDS PAU_02396 NC_012962.1 2738266 2739360 R hypothetical protein complement(2738266..2739360) Photorhabdus asymbiotica 8167381 YP_003041233.1 CDS pntB NC_012962.1 2740062 2741450 R catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase complement(2740062..2741450) Photorhabdus asymbiotica 8167382 YP_003041234.1 CDS pntA NC_012962.1 2741461 2742990 R forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha complement(2741461..2742990) Photorhabdus asymbiotica 8168287 YP_003041235.1 CDS PAU_02399 NC_012962.1 2743381 2744334 D hypothetical protein 2743381..2744334 Photorhabdus asymbiotica 8168286 YP_003041236.1 CDS PAU_02400 NC_012962.1 2744406 2744648 R similar to acyl carrier protein; hypothetical protein complement(2744406..2744648) Photorhabdus asymbiotica 8167383 YP_003041237.1 CDS PAU_02401 NC_012962.1 2744973 2746121 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(2744973..2746121) Photorhabdus asymbiotica 8167384 YP_003041238.1 CDS darA NC_012962.1 2746126 2747070 R dialkylrecorsinol condensing enzyme complement(2746126..2747070) Photorhabdus asymbiotica 8167385 YP_003041239.1 CDS PAU_02403 NC_012962.1 2748084 2749475 D putative arginine/ornithine antiporter 2748084..2749475 Photorhabdus asymbiotica 8169162 YP_003041240.1 CDS yfaD NC_012962.1 2749918 2750820 R putative transposase complement(2749918..2750820) Photorhabdus asymbiotica 8167386 YP_003041241.1 CDS PAU_02405 NC_012962.1 2751109 2751954 R hypothetical protein complement(2751109..2751954) Photorhabdus asymbiotica 8165476 YP_003041242.1 CDS lpfA NC_012962.1 2752951 2753481 D involved in regulation of length and mediation of adhesion of fimbriae; fimbrial subunit type 1 2752951..2753481 Photorhabdus asymbiotica 8167387 YP_003041243.1 CDS lpfB NC_012962.1 2753576 2754250 D Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation; hypothetical protein 2753576..2754250 Photorhabdus asymbiotica 8165099 YP_003041244.1 CDS yraJ NC_012962.1 2754293 2756827 D putative outer membrane protein 2754293..2756827 Photorhabdus asymbiotica 8165100 YP_003041245.1 CDS mrkD NC_012962.1 2756847 2757839 D involved in regulation of length and mediation of adhesion of fimbriae; fimbria adhesin protein precursor 2756847..2757839 Photorhabdus asymbiotica 8169175 YP_003041246.1 CDS symA NC_012962.1 2758066 2758431 R hypothetical protein complement(2758066..2758431) Photorhabdus asymbiotica 8166379 YP_003041247.1 CDS PAU_02411 NC_012962.1 2758714 2759079 D hypothetical protein 2758714..2759079 Photorhabdus asymbiotica 8167457 YP_003041248.1 CDS PAU_02412 NC_012962.1 2759076 2759606 D hypothetical protein 2759076..2759606 Photorhabdus asymbiotica 8167388 YP_003041249.1 CDS PAU_02413 NC_012962.1 2759655 2760182 D hypothetical protein 2759655..2760182 Photorhabdus asymbiotica 8167389 YP_003041250.1 CDS PAU_02414 NC_012962.1 2760185 2760670 D hypothetical protein 2760185..2760670 Photorhabdus asymbiotica 8167390 YP_003041251.1 CDS PAU_02415 NC_012962.1 2760819 2761037 R hypothetical protein complement(2760819..2761037) Photorhabdus asymbiotica 8167391 YP_003041252.1 CDS hrpA NC_012962.1 2761830 2765573 R involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA complement(2761830..2765573) Photorhabdus asymbiotica 8167392 YP_003041253.1 CDS azoR NC_012962.1 2765841 2766446 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 2765841..2766446 Photorhabdus asymbiotica 8167323 YP_003041254.1 CDS ydbL NC_012962.1 2766646 2766978 R hypothetical protein complement(2766646..2766978) Photorhabdus asymbiotica 8165544 YP_003041255.1 CDS ynbE NC_012962.1 2766990 2767187 R membrane protein complement(2766990..2767187) Photorhabdus asymbiotica 8165418 YP_003041256.1 CDS PAU_02420 NC_012962.1 2767184 2769811 R hypothetical protein complement(2767184..2769811) Photorhabdus asymbiotica 8164998 YP_003041257.1 CDS ldhA NC_012962.1 2769969 2771057 D fermentative d-lactate dehydrogenase, nad-dependent (fermentative d lactate dehydrogenase) 2769969..2771057 Photorhabdus asymbiotica 8167393 YP_003041258.1 CDS hslJ NC_012962.1 2771080 2771505 D heat-inducible protein 2771080..2771505 Photorhabdus asymbiotica 8165070 YP_003041259.1 CDS PAU_02423 NC_012962.1 2771569 2771703 D hypothetical protein 2771569..2771703 Photorhabdus asymbiotica 8167332 YP_003041260.1 CDS PAU_02424 NC_012962.1 2771785 2772405 D hypothetical protein 2771785..2772405 Photorhabdus asymbiotica 8167394 YP_003041261.1 CDS PAU_02425 NC_012962.1 2772474 2773112 R hypothetical protein complement(2772474..2773112) Photorhabdus asymbiotica 8167395 YP_003041262.1 CDS ycgN NC_012962.1 2773308 2773742 R hypothetical protein complement(2773308..2773742) Photorhabdus asymbiotica 8167396 YP_003041263.1 CDS PAU_02427 NC_012962.1 2773768 2774424 R hypothetical protein complement(2773768..2774424) Photorhabdus asymbiotica 8166636 YP_003041264.1 CDS ycgL NC_012962.1 2774665 2774937 R hypothetical protein ycgl complement(2774665..2774937) Photorhabdus asymbiotica 8167397 YP_003041265.1 CDS minC NC_012962.1 2775077 2775760 D blocks the formation of polar Z-ring septums; septum formation inhibitor 2775077..2775760 Photorhabdus asymbiotica 8166635 YP_003041266.1 CDS minD NC_012962.1 2775784 2776596 D ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 2775784..2776596 Photorhabdus asymbiotica 8166329 YP_003041267.1 CDS minE NC_012962.1 2776600 2776869 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2776600..2776869 Photorhabdus asymbiotica 8166330 YP_003041268.1 CDS rnd NC_012962.1 2777105 2778232 R ribonuclease D complement(2777105..2778232) Photorhabdus asymbiotica 8166331 YP_003041269.1 CDS fadD NC_012962.1 2778321 2780009 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(2778321..2780009) Photorhabdus asymbiotica 8164873 YP_003041270.1 CDS PAU_02434 NC_012962.1 2780361 2780879 D gcn5-related n-acetyltransferase 2780361..2780879 Photorhabdus asymbiotica 8166502 YP_003041271.1 CDS PAU_02435 NC_012962.1 2780970 2781551 R hypothetical protein complement(2780970..2781551) Photorhabdus asymbiotica 8167398 YP_003041272.1 CDS yeaZ NC_012962.1 2781771 2782466 R hypothetical protein complement(2781771..2782466) Photorhabdus asymbiotica 8167399 YP_003041273.1 CDS PAU_02437 NC_012962.1 2782629 2783237 R trypanothione synthetase domain protein precursor complement(2782629..2783237) Photorhabdus asymbiotica 8165445 YP_003041274.1 CDS PAU_02438 NC_012962.1 2783649 2785586 R hypothetical protein complement(2783649..2785586) Photorhabdus asymbiotica 8167400 YP_003041275.1 CDS yoaB NC_012962.1 2785686 2786033 D hypothetical protein 2785686..2786033 Photorhabdus asymbiotica 8167401 YP_003041276.1 CDS PAU_02440 NC_012962.1 2786081 2786464 D similarities with hemolysin; hypothetical protein 2786081..2786464 Photorhabdus asymbiotica 8165008 YP_003041277.1 CDS mdtI NC_012962.1 2786999 2787331 R with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtI complement(2786999..2787331) Photorhabdus asymbiotica 8167402 YP_003041278.1 CDS mdtJ NC_012962.1 2787333 2787749 R with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtJ complement(2787333..2787749) Photorhabdus asymbiotica 8168979 YP_003041279.1 CDS zwf NC_012962.1 2788500 2789975 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2788500..2789975) Photorhabdus asymbiotica 8168980 YP_003041280.1 CDS hexR NC_012962.1 2790318 2791178 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2790318..2791178 Photorhabdus asymbiotica 8169201 YP_003041281.1 CDS orf42 NC_012962.1 2791230 2791991 R hypothetical protein complement(2791230..2791991) Photorhabdus asymbiotica 8169302 YP_003041282.1 CDS PAU_02446 NC_012962.1 2791988 2793967 R similarities with vgrg and vgre proteins; hypothetical protein complement(2791988..2793967) Photorhabdus asymbiotica 8165601 YP_003041283.1 CDS orf53 NC_012962.1 2794186 2794941 R hypothetical protein complement(2794186..2794941) Photorhabdus asymbiotica 8167403 YP_003041284.1 CDS orf53 NC_012962.1 2795012 2795770 R hypothetical protein complement(2795012..2795770) Photorhabdus asymbiotica 8165607 YP_003041285.1 CDS PAU_02449 NC_012962.1 2795767 2797662 R ferritin related protein; hypothetical protein complement(2795767..2797662) Photorhabdus asymbiotica 8165608 YP_003041286.1 CDS PAU_02450 NC_012962.1 2797691 2799466 R hypothetical protein complement(2797691..2799466) Photorhabdus asymbiotica 8167404 YP_003041287.1 CDS PAU_02451 NC_012962.1 2800149 2800883 R hypothetical protein complement(2800149..2800883) Photorhabdus asymbiotica 8167405 YP_003041288.1 CDS PAU_02452 NC_012962.1 2800880 2802262 R ferritin related protein; hypothetical protein complement(2800880..2802262) Photorhabdus asymbiotica 8167406 YP_003041289.1 CDS PAU_02453 NC_012962.1 2802263 2802769 R hypothetical protein complement(2802263..2802769) Photorhabdus asymbiotica 8167407 YP_003041290.1 CDS PAU_02454 NC_012962.1 2803849 2804700 R putative 3-hydroxyacyl-coa dehydrogenase complement(2803849..2804700) Photorhabdus asymbiotica 8167408 YP_003041291.1 CDS PAU_02455 NC_012962.1 2804771 2805499 R hypothetical protein complement(2804771..2805499) Photorhabdus asymbiotica 8167409 YP_003041292.1 CDS scoT NC_012962.1 2805505 2806335 R Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics; thioesterase ii; thioesterase complement(2805505..2806335) Photorhabdus asymbiotica 8167410 YP_003041293.1 CDS PAU_02457 NC_012962.1 2806328 2806831 R hypothetical protein complement(2806328..2806831) Photorhabdus asymbiotica 8167185 YP_003041294.1 CDS pykA NC_012962.1 2807965 2809407 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2807965..2809407 Photorhabdus asymbiotica 8167411 YP_003041295.1 CDS PAU_02459 NC_012962.1 2811474 2813843 D membrane protein 2811474..2813843 Photorhabdus asymbiotica 8167412 YP_003041296.1 CDS PAU_02461 NC_012962.1 2813852 2815105 D hypothetical protein 2813852..2815105 Photorhabdus asymbiotica 8167413 YP_003041297.1 CDS PAU_02462 NC_012962.1 2815107 2815769 D putative abc transporter atp-binding protein 2815107..2815769 Photorhabdus asymbiotica 8167414 YP_003041298.1 CDS ydeM NC_012962.1 2815796 2817085 D hypothetical protein 2815796..2817085 Photorhabdus asymbiotica 8167415 YP_003041299.1 CDS msbB NC_012962.1 2817344 2818312 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(2817344..2818312) Photorhabdus asymbiotica 8165427 YP_003041300.1 CDS PAU_02465 NC_012962.1 2818464 2819777 R hypothetical protein complement(2818464..2819777) Photorhabdus asymbiotica 8166384 YP_003041301.1 CDS znuA NC_012962.1 2819798 2820745 R involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic component complement(2819798..2820745) Photorhabdus asymbiotica 8167416 YP_003041302.1 CDS znuC NC_012962.1 2820798 2821586 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 2820798..2821586 Photorhabdus asymbiotica 8169197 YP_003041303.1 CDS znuB NC_012962.1 <2821723 2822364 D high-affinity zinc uptake system membrane protein znub <2821723..2822364 Photorhabdus asymbiotica 8169199 YP_003041304.1 CDS ruvB NC_012962.1 2822575 2823582 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2822575..2823582) Photorhabdus asymbiotica 8169198 YP_003041305.1 CDS ruvA NC_012962.1 2823599 2824216 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2823599..2824216) Photorhabdus asymbiotica 8167165 YP_003041306.1 CDS ruvC NC_012962.1 2824295 2824816 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2824295..2824816) Photorhabdus asymbiotica 8167164 YP_003041307.1 CDS yebC NC_012962.1 2824922 2825665 R hypothetical protein complement(2824922..2825665) Photorhabdus asymbiotica 8167166 YP_003041308.1 CDS ntpA NC_012962.1 2825860 2826297 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(2825860..2826297) Photorhabdus asymbiotica 8165446 YP_003041309.1 CDS aspS NC_012962.1 2826297 2828069 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2826297..2828069) Photorhabdus asymbiotica 8166939 YP_003041310.1 CDS yecN NC_012962.1 2828342 2828740 D hypothetical protein 2828342..2828740 Photorhabdus asymbiotica 8165523 YP_003041311.1 CDS PAU_02476 NC_012962.1 2829053 2829946 D hypothetical protein 2829053..2829946 Photorhabdus asymbiotica 8165451 YP_003041312.1 CDS yecP NC_012962.1 2829947 2830918 D hypothetical protein 2829947..2830918 Photorhabdus asymbiotica 8167417 YP_003041313.1 CDS cutC NC_012962.1 2830974 2831756 R copper homeostasis protein CutC complement(2830974..2831756) Photorhabdus asymbiotica 8165452 YP_003041314.1 CDS yecM NC_012962.1 2831888 2832442 R hypothetical protein complement(2831888..2832442) Photorhabdus asymbiotica 8169110 YP_003041315.1 CDS OSJNBb0098I11.12 NC_012962.1 2832539 2832661 R hypothetical protein complement(2832539..2832661) Photorhabdus asymbiotica 8165450 YP_003041316.1 CDS orf43 NC_012962.1 2832773 2832913 R hypothetical protein complement(2832773..2832913) Photorhabdus asymbiotica 8165620 YP_003041317.1 CDS orf43 NC_012962.1 2832987 2833751 R Hypothetical membrane Protein complement(2832987..2833751) Photorhabdus asymbiotica 8165603 YP_003041318.1 CDS pdl1 NC_012962.1 2833748 2835661 R lipase, class 3 complement(2833748..2835661) Photorhabdus asymbiotica 8165604 YP_003041319.1 CDS orf42 NC_012962.1 2836025 2836804 R hypothetical protein complement(2836025..2836804) Photorhabdus asymbiotica 8168685 YP_003041320.1 CDS PAU_02485 NC_012962.1 2836801 2838780 R This repeat composes the C-terminal part of the bacteriophage T4 baseplate protein Gp5. This region of the protein forms a needle like projection from the baseplate that is presumed to puncture the bacterial cell membrane.; hypothetical protein complement(2836801..2838780) Photorhabdus asymbiotica 8165602 YP_003041321.1 CDS PAU_02486 NC_012962.1 2838873 2839649 R hypothetical protein complement(2838873..2839649) Photorhabdus asymbiotica 8167418 YP_003041322.1 CDS PAU_02487 NC_012962.1 2839752 2840516 R hypothetical protein complement(2839752..2840516) Photorhabdus asymbiotica 8167419 YP_003041323.1 CDS orf43 NC_012962.1 2840619 2841383 R hypothetical protein complement(2840619..2841383) Photorhabdus asymbiotica 8167420 YP_003041324.1 CDS pdl2 NC_012962.1 2841380 2843299 R lipase complement(2841380..2843299) Photorhabdus asymbiotica 8165605 YP_003041325.1 CDS orf53 NC_012962.1 2843993 2844274 R hypothetical membrane protein complement(2843993..2844274) Photorhabdus asymbiotica 8168686 YP_003041326.1 CDS PAU_02491 NC_012962.1 2844338 2845090 R hypothetical protein complement(2844338..2845090) Photorhabdus asymbiotica 8165610 YP_003041327.1 CDS PAU_02492 NC_012962.1 2845178 2845915 R hypothetical protein complement(2845178..2845915) Photorhabdus asymbiotica 8167421 YP_003041328.1 CDS orf53 NC_012962.1 2846003 2846740 R hypothetical protein complement(2846003..2846740) Photorhabdus asymbiotica 8167422 YP_003041329.1 CDS pdl3 NC_012962.1 2846743 2848617 R pdl (lipase family) protein complement(2846743..2848617) Photorhabdus asymbiotica 8165609 YP_003041330.1 CDS PAU_02495 NC_012962.1 2848642 2850393 R hypothetical protein complement(2848642..2850393) Photorhabdus asymbiotica 8168687 YP_003041331.1 CDS PAU_02496 NC_012962.1 2850402 2850674 R hypothetical protein complement(2850402..2850674) Photorhabdus asymbiotica 8167423 YP_003041332.1 CDS yceI NC_012962.1 2851321 2851899 R hypothetical protein complement(2851321..2851899) Photorhabdus asymbiotica 8167424 YP_003041333.1 CDS PAU_02498 NC_012962.1 2851926 2852480 R cytochrome b561-like protein complement(2851926..2852480) Photorhabdus asymbiotica 8166625 YP_003041334.1 CDS PAU_02499 NC_012962.1 2853196 2853933 D hypothetical protein 2853196..2853933 Photorhabdus asymbiotica 8167425 YP_003041335.1 CDS PAU_02500 NC_012962.1 2853992 2854159 D hypothetical protein 2853992..2854159 Photorhabdus asymbiotica 8167426 YP_003041336.1 CDS argS NC_012962.1 2854344 2856074 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2854344..2856074 Photorhabdus asymbiotica 8167427 YP_003041337.1 CDS mviN NC_012962.1 2856245 2857780 R The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species.; virulence factor mvin homolog complement(2856245..2857780) Photorhabdus asymbiotica 8165493 YP_003041338.1 CDS rimJ NC_012962.1 2859008 2859592 R ribosomal-protein-S5-alanine N-acetyltransferase complement(2859008..2859592) Photorhabdus asymbiotica 8166892 YP_003041339.1 CDS mdtH NC_012962.1 2859905 2861110 D Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 2859905..2861110 Photorhabdus asymbiotica 8164859 YP_003041340.1 CDS yceB NC_012962.1 2861148 2861711 D hypothetical protein 2861148..2861711 Photorhabdus asymbiotica 8168978 YP_003041341.1 CDS ycdY NC_012962.1 2861772 2862323 R hypothetical protein complement(2861772..2862323) Photorhabdus asymbiotica 8166620 YP_003041342.1 CDS ycdW NC_012962.1 2862385 2863326 R putative 2-hydroxyacid dehydrogenase complement(2862385..2863326) Photorhabdus asymbiotica 8166618 YP_003041343.1 CDS higB NC_012962.1 2864020 2864214 D hypothetical protein 2864020..2864214 Photorhabdus asymbiotica 8166973 YP_003041344.1 CDS yddM NC_012962.1 2864214 2864516 D hypothetical protein 2864214..2864516 Photorhabdus asymbiotica 8169307 YP_003041345.1 CDS luxE NC_012962.1 2864677 2865789 R LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction; LuxE bioluminescence protein complement(2864677..2865789) Photorhabdus asymbiotica 8165425 YP_003041346.1 CDS luxB NC_012962.1 2866102 2867076 R bioluminescence operon; luciferase beta subunit complement(2866102..2867076) Photorhabdus asymbiotica 8168939 YP_003041347.1 CDS luxA NC_012962.1 2867091 2868173 R The enzyme responsible for bioluminescence in motile Gram-negative luminous bacteria is bacterial luciferase, which catalyses the oxidation of reduced riboflavin phosphate (FMNH2) and a long chain fatty aldehyde with the emission of blue green light (490 nm).; luciferase complement(2867091..2868173) Photorhabdus asymbiotica 8168936 YP_003041348.1 CDS luxD NC_012962.1 2868355 2869278 R part of the fatty acid reductase system required for aldehyde biosynthesis; produces fatty acids for the luminescent reaction; acyl transferase complement(2868355..2869278) Photorhabdus asymbiotica 8168935 YP_003041349.1 CDS luxC NC_012962.1 2869292 2870734 R bioluminesence; acyl-CoA reductase complement(2869292..2870734) Photorhabdus asymbiotica 8168938 YP_003041350.1 CDS PAU_02515 NC_012962.1 2871322 2871780 R pyocin s3 immunity protein complement(2871322..2871780) Photorhabdus asymbiotica 8168937 YP_003041351.1 CDS PAU_02516 NC_012962.1 2871777 2873450 R Pyocins are polypeptide toxins produced by, and active against, bacteria. S-type pyocins cause cell death by DNA breakdown due to endonuclease activity.; pyocin s2-like protein complement(2871777..2873450) Photorhabdus asymbiotica 8167428 YP_003041352.1 CDS PAU_02517 NC_012962.1 2874923 2875021 R hypothetical protein complement(2874923..2875021) Photorhabdus asymbiotica 8167429 YP_003041353.1 CDS PAU_02518 NC_012962.1 2875175 2875294 R pyocin s3; pyocin s3 immunity protein complement(2875175..2875294) Photorhabdus asymbiotica 8167430 YP_003041354.1 CDS PAU_02519 NC_012962.1 2875376 2875828 R pyocin s3; immunity protein of pyocin s3 complement(2875376..2875828) Photorhabdus asymbiotica 8167431 YP_003041355.1 CDS PAU_02520 NC_012962.1 2875828 2877474 R Pyocins are polypeptide toxins produced by, and active against, bacteria.; pyocin s2-like protein complement(2875828..2877474) Photorhabdus asymbiotica 8167432 YP_003041356.1 CDS ychM NC_012962.1 2878064 2879833 D putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 2878064..2879833 Photorhabdus asymbiotica 8167433 YP_003041357.1 CDS kdsA NC_012962.1 2879937 2880815 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(2879937..2880815) Photorhabdus asymbiotica 8166640 YP_003041358.1 CDS sirB1 NC_012962.1 2880834 2881643 R putative transcriptional regulator complement(2880834..2881643) Photorhabdus asymbiotica 8165057 YP_003041359.1 CDS hemK NC_012962.1 2881627 2882478 R HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2881627..2882478) Photorhabdus asymbiotica 8167646 YP_003041360.1 CDS prfA NC_012962.1 2882475 2883557 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(2882475..2883557) Photorhabdus asymbiotica 8169297 YP_003041361.1 CDS hemA NC_012962.1 2883589 2884851 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(2883589..2884851) Photorhabdus asymbiotica 8168309 YP_003041362.1 CDS lolB NC_012962.1 2885352 2885978 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 2885352..2885978 Photorhabdus asymbiotica 8169290 YP_003041363.1 CDS ipk NC_012962.1 2885978 2886853 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2885978..2886853 Photorhabdus asymbiotica 8165094 YP_003041364.1 CDS prs NC_012962.1 2886917 2887864 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 2886917..2887864 Photorhabdus asymbiotica 8165030 YP_003041365.1 CDS ychH NC_012962.1 2887989 2888264 R YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein complement(2887989..2888264) Photorhabdus asymbiotica 8168330 YP_003041366.1 CDS PAU_02531 NC_012962.1 2888937 2889917 R Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction.; putative invasin and adhesin complement(2888937..2889917) Photorhabdus asymbiotica 8166639 YP_003041367.1 CDS PAU_02532 NC_012962.1 2890010 2891335 R hypothetical protein complement(2890010..2891335) Photorhabdus asymbiotica 8167434 YP_003041368.1 CDS PAU_02533 NC_012962.1 2891332 2892018 R hypothetical protein complement(2891332..2892018) Photorhabdus asymbiotica 8167435 YP_003041369.1 CDS PAU_02534 NC_012962.1 2892187 2893680 R hypothetical protein complement(2892187..2893680) Photorhabdus asymbiotica 8167436 YP_003041370.1 CDS PAU_02535 NC_012962.1 2893944 2895476 R hypothetical protein complement(2893944..2895476) Photorhabdus asymbiotica 8167437 YP_003041371.1 CDS PAU_02536 NC_012962.1 2895895 2897433 R hypothetical protein complement(2895895..2897433) Photorhabdus asymbiotica 8167438 YP_003041372.1 CDS PAU_02537 NC_012962.1 2898338 2899846 R hypothetical protein complement(2898338..2899846) Photorhabdus asymbiotica 8167439 YP_003041373.1 CDS eaeH NC_012962.1 2899960 2905407 R bacterial adhesion mediation molecule intimin targets the translocated intimin receptor, Tir. Tir is secreted by the bacteria and is embedded in the target cell's plasma membrane . This facilitates bacterial cell attachment to the host.; putative adhesin complement(2899960..2905407) Photorhabdus asymbiotica 8167440 YP_003041374.1 CDS PAU_02539 NC_012962.1 2905761 2907962 R putative bacteriophage tail protein (hypothetical prophage protein) complement(2905761..2907962) Photorhabdus asymbiotica 8168661 YP_003041375.1 CDS PAU_02540 NC_012962.1 2908452 2909489 R bacteriophage tail fiber protein complement(2908452..2909489) Photorhabdus asymbiotica 8167441 YP_003041376.1 CDS pth NC_012962.1 2910067 2910657 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 2910067..2910657 Photorhabdus asymbiotica 8167442 YP_003041377.1 CDS ychF NC_012962.1 2910794 2911885 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 2910794..2911885 Photorhabdus asymbiotica 8168345 YP_003041378.1 CDS PAU_02543 NC_012962.1 2912029 2912301 D hypothetical protein 2912029..2912301 Photorhabdus asymbiotica 8166638 YP_003041379.1 CDS PAU_02544 NC_012962.1 2912711 2913517 D hypothetical protein 2912711..2913517 Photorhabdus asymbiotica 8167443 YP_003041380.1 CDS PAU_02545 NC_012962.1 2914000 2914842 D hypothetical protein 2914000..2914842 Photorhabdus asymbiotica 8167444 YP_003041381.1 CDS ydcR NC_012962.1 2915342 2916772 R hypothetical protein complement(2915342..2916772) Photorhabdus asymbiotica 8167445 YP_003041382.1 CDS cioA NC_012962.1 2916901 2918238 D ubiquinol oxidase subunit i, cyanide insensitive 2916901..2918238 Photorhabdus asymbiotica 8165421 YP_003041383.1 CDS cioB NC_012962.1 2918228 2919235 D ubiquinol oxidase subunit ii, cyanide insensitive 2918228..2919235 Photorhabdus asymbiotica 8168573 YP_003041384.1 CDS narX NC_012962.1 2919442 2920671 D nitrate/nitrite sensor protein NarX 2919442..2920671 Photorhabdus asymbiotica 8168574 YP_003041385.1 CDS viuB NC_012962.1 2920779 2921657 D vibriobactin utilization protein viub 2920779..2921657 Photorhabdus asymbiotica 8166908 YP_003041386.1 CDS sypC3 NC_012962.1 2921892 2926529 R similar to different toxins like syringomycin synthetase an gramicidin s synthase 2; syringomycin synthetase-like protein complement(2921892..2926529) Photorhabdus asymbiotica 8168450 YP_003041387.1 CDS phoH NC_012962.1 2927188 2927979 R hypothetical protein complement(2927188..2927979) Photorhabdus asymbiotica 8167461 YP_003041388.1 CDS endA NC_012962.1 2928685 2929686 R endonuclease I complement(2928685..2929686) Photorhabdus asymbiotica 8168732 YP_003041389.1 CDS PAU_02554 NC_012962.1 2930341 2931183 R hypothetical membrane protein complement(2930341..2931183) Photorhabdus asymbiotica 8168674 YP_003041390.1 CDS PAU_02555 NC_012962.1 2931226 2931954 R putative short-chain dehydrogenase/reductase complement(2931226..2931954) Photorhabdus asymbiotica 8167446 YP_003041391.1 CDS PAU_02556 NC_012962.1 2931963 2932397 R hypothetical protein complement(2931963..2932397) Photorhabdus asymbiotica 8167447 YP_003041392.1 CDS spuA NC_012962.1 2932384 2932890 R hypothetical protein complement(2932384..2932890) Photorhabdus asymbiotica 8167448 YP_003041393.1 CDS PAU_02558 NC_012962.1 2933018 2933719 R hypothetical protein complement(2933018..2933719) Photorhabdus asymbiotica 8167677 YP_003041394.1 CDS ndk NC_012962.1 2933720 2934703 R hypothetical protein complement(2933720..2934703) Photorhabdus asymbiotica 8167449 YP_003041395.1 CDS PAU_02560 NC_012962.1 2934752 2935657 R hypothetical protein complement(2934752..2935657) Photorhabdus asymbiotica 8166913 YP_003041396.1 CDS aqpZ NC_012962.1 2936281 2936976 R porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z complement(2936281..2936976) Photorhabdus asymbiotica 8167450 YP_003041397.1 CDS PAU_02562 NC_012962.1 2937284 2937403 D hypothetical protein 2937284..2937403 Photorhabdus asymbiotica 8166792 YP_003041398.1 CDS uspG NC_012962.1 2937455 2937898 R hypothetical protein complement(2937455..2937898) Photorhabdus asymbiotica 8167451 YP_003041399.1 CDS PAU_02564 NC_012962.1 2938014 2938352 R hypothetical protein complement(2938014..2938352) Photorhabdus asymbiotica 8168428 YP_003041400.1 CDS uspG NC_012962.1 2938750 2939178 R hypothetical protein complement(2938750..2939178) Photorhabdus asymbiotica 8167452 YP_003041401.1 CDS uvrY NC_012962.1 2940240 2940935 D in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2940240..2940935 Photorhabdus asymbiotica 8168429 YP_003041402.1 CDS uvrC NC_012962.1 2940919 2942751 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2940919..2942751 Photorhabdus asymbiotica 8168435 YP_003041403.1 CDS pgsA NC_012962.1 2942809 2943357 D phosphatidylglycerophosphate synthetase 2942809..2943357 Photorhabdus asymbiotica 8168433 YP_003041404.1 CDS PAU_02569 NC_012962.1 2943852 2944382 D hypothetical protein 2943852..2944382 Photorhabdus asymbiotica 8166976 YP_003041405.1 CDS orf7 NC_012962.1 2944369 2945535 D secreted into the host cell cytosol by the type III secretion system and induces DNA fragmentation in macrophages; effector protein 2944369..2945535 Photorhabdus asymbiotica 8167453 YP_003041406.1 CDS PAU_02571 NC_012962.1 2945753 2946214 R hypothetical protein complement(2945753..2946214) Photorhabdus asymbiotica 8165614 YP_003041407.1 CDS PAU_02572 NC_012962.1 2947078 2947767 D luxr family transcriptional regulator; LuxR family transcriptional regulator 2947078..2947767 Photorhabdus asymbiotica 8166148 YP_003041408.1 CDS PAU_02573 NC_012962.1 2947899 2948600 D putative transcriptional regulator 2947899..2948600 Photorhabdus asymbiotica 8166149 YP_003041409.1 CDS PAU_02574 NC_012962.1 2949479 2950171 D transcriptional regulator 2949479..2950171 Photorhabdus asymbiotica 8167372 YP_003041410.1 CDS PAU_02575 NC_012962.1 2950228 2950908 D luxr family transcriptional regulator; LuxR family transcription regulator 2950228..2950908 Photorhabdus asymbiotica 8165902 YP_003041411.1 CDS PAU_02576 NC_012962.1 2950938 2951609 D luxr family transcriptional regulator; LuxR family transcriptional regulator 2950938..2951609 Photorhabdus asymbiotica 8165903 YP_003041412.1 CDS PAU_02577 NC_012962.1 2951758 2952453 D luxr family transcriptional regulator; LuxR family transcriptional regulator 2951758..2952453 Photorhabdus asymbiotica 8165904 YP_003041413.1 CDS PAU_02578 NC_012962.1 2952695 2953795 R hypothetical protein complement(2952695..2953795) Photorhabdus asymbiotica 8165905 YP_003041414.1 CDS PAU_02579 NC_012962.1 2953988 2955343 R hypothetical protein complement(2953988..2955343) Photorhabdus asymbiotica 8165906 YP_003041415.1 CDS PAU_02580 NC_012962.1 2955354 2955713 R hypothetical protein complement(2955354..2955713) Photorhabdus asymbiotica 8165907 YP_003041416.1 CDS php NC_012962.1 2955724 2956644 R phosphotriesterase homology protein; PhP; YhfV; member of a family of proteins related to phosphotriesterase (PTE); putative hydrolase complement(2955724..2956644) Photorhabdus asymbiotica 8165908 YP_003041417.1 CDS yhfX NC_012962.1 2956651 2957817 R similar to unknown protein yhfx of e.coli; hypothetical protein complement(2956651..2957817) Photorhabdus asymbiotica 8168737 YP_003041418.1 CDS PAU_02583 NC_012962.1 2958070 2958426 R similar to unknown protein yhfy of escherichia coli; hypothetical protein complement(2958070..2958426) Photorhabdus asymbiotica 8167605 YP_003041419.1 CDS PAU_02584 NC_012962.1 2958452 2959357 R hypothetical protein complement(2958452..2959357) Photorhabdus asymbiotica 8165909 YP_003041420.1 CDS PAU_02585 NC_012962.1 2959674 2959946 D hypothetical protein 2959674..2959946 Photorhabdus asymbiotica 8165910 YP_003041421.1 CDS fimB NC_012962.1 2959910 2960530 R type 1 fimbriae regulatory recombinase protein complement(2959910..2960530) Photorhabdus asymbiotica 8165911 YP_003041422.1 CDS PAU_02587 NC_012962.1 2962467 2962790 D LuxR family transcriptional regulator 2962467..2962790 Photorhabdus asymbiotica 8166540 YP_003041423.1 CDS PAU_02588 NC_012962.1 2962966 2963706 D putative transcriptional regulator 2962966..2963706 Photorhabdus asymbiotica 8165912 YP_003041424.1 CDS ulaA NC_012962.1 2964085 2965341 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2964085..2965341) Photorhabdus asymbiotica 8165913 YP_003041425.1 CDS sgaB NC_012962.1 2965354 2965653 R hypothetical protein complement(2965354..2965653) Photorhabdus asymbiotica 8165914 YP_003041426.1 CDS sgcA NC_012962.1 2965670 2966113 R putative phosphotransferase enzyme ii, a component sgca complement(2965670..2966113) Photorhabdus asymbiotica 8167643 YP_003041427.1 CDS PAU_02592 NC_012962.1 2966479 2967519 D regulatory protein, laci:periplasmic binding protein/lac transcriptional regulator 2966479..2967519 Photorhabdus asymbiotica 8167644 YP_003041428.1 CDS PAU_02593 NC_012962.1 2967688 2968155 R hypothetical protein complement(2967688..2968155) Photorhabdus asymbiotica 8165915 YP_003041429.1 CDS PAU_02594 NC_012962.1 2968183 2968290 R hypothetical protein complement(2968183..2968290) Photorhabdus asymbiotica 8165916 YP_003041430.1 CDS PAU_02595 NC_012962.1 2968356 2968745 R hypothetical protein complement(2968356..2968745) Photorhabdus asymbiotica 8165917 YP_003041431.1 CDS PAU_02596 NC_012962.1 2969153 2970208 R nadh:flavin oxidoreductase/nadh oxidase complement(2969153..2970208) Photorhabdus asymbiotica 8165918 YP_003041432.1 CDS ymt NC_012962.1 2970539 2972344 D similar to yersinia pestis murine toxin; murine toxin Ymt 2970539..2972344 Photorhabdus asymbiotica 8165919 YP_003041433.1 CDS dsdA NC_012962.1 2972582 2973913 R catalyzes the formation of pyruvate from serine; D-serine dehydratase complement(2972582..2973913) Photorhabdus asymbiotica 8164997 YP_003041434.1 CDS dsdX NC_012962.1 2974202 2975539 R member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX complement(2974202..2975539) Photorhabdus asymbiotica 8168652 YP_003041435.1 CDS dsdC NC_012962.1 2975782 2976720 D regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 2975782..2976720 Photorhabdus asymbiotica 8168654 YP_003041436.1 CDS PAU_02601 NC_012962.1 2977219 2977764 D putative PagC-like virulence-related membrane protein 2977219..2977764 Photorhabdus asymbiotica 8168653 YP_003041437.1 CDS PAU_02602 NC_012962.1 2978146 2978550 D hypothetical protein 2978146..2978550 Photorhabdus asymbiotica 8165920 YP_003041438.1 CDS cycA NC_012962.1 2978980 2980386 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 2978980..2980386 Photorhabdus asymbiotica 8166977 YP_003041439.1 CDS wrbA NC_012962.1 2980621 2981220 D stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA 2980621..2981220 Photorhabdus asymbiotica 8169117 YP_003041440.1 CDS putP NC_012962.1 2981269 2982852 R sodium/proline symporter (proline permease) complement(2981269..2982852) Photorhabdus asymbiotica 8168494 YP_003041441.1 CDS putA NC_012962.1 2983238 2987218 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 2983238..2987218 Photorhabdus asymbiotica 8165111 YP_003041442.1 CDS fliZ NC_012962.1 2987297 2987857 R expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; flagella biosynthesis protein FliZ complement(2987297..2987857) Photorhabdus asymbiotica 8165110 YP_003041443.1 CDS fliA NC_012962.1 2987862 2988596 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(2987862..2988596) Photorhabdus asymbiotica 8168135 YP_003041444.1 CDS fliC NC_012962.1 2988819 2989892 R structural flagella protein; flagellin complement(2988819..2989892) Photorhabdus asymbiotica 8168115 YP_003041445.1 CDS fliD NC_012962.1 2990166 2991584 D involved in flagellin assembly; flagellar capping protein 2990166..2991584 Photorhabdus asymbiotica 8168116 YP_003041446.1 CDS fliS NC_012962.1 2991597 2992007 D flagellin specific chaperone; flagellar protein FliS 2991597..2992007 Photorhabdus asymbiotica 8168117 YP_003041447.1 CDS fliT NC_012962.1 2992007 2992372 D binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 2992007..2992372 Photorhabdus asymbiotica 8168132 YP_003041448.1 CDS PAU_02613 NC_012962.1 2993122 2993439 D virulence-associated protein 2993122..2993439 Photorhabdus asymbiotica 8168133 YP_003041449.1 CDS fliE NC_012962.1 2993466 2993777 R flagellar hook-basal body complex; flagellar hook-basal body complex protein flie complement(2993466..2993777) Photorhabdus asymbiotica 8165922 YP_003041450.1 CDS fliF NC_012962.1 2994055 2995758 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 2994055..2995758 Photorhabdus asymbiotica 8168118 YP_003041451.1 CDS fliG NC_012962.1 2995755 2996747 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2995755..2996747 Photorhabdus asymbiotica 8168119 YP_003041452.1 CDS fliH NC_012962.1 2996740 2997444 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2996740..2997444 Photorhabdus asymbiotica 8168120 YP_003041453.1 CDS fliI NC_012962.1 2997444 2998811 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2997444..2998811 Photorhabdus asymbiotica 8168121 YP_003041454.1 CDS fliJ NC_012962.1 2998854 2999297 D rod/hook and filament chaperone; flagellar biosynthesis chaperone 2998854..2999297 Photorhabdus asymbiotica 8168122 YP_003041455.1 CDS fliK NC_012962.1 2999297 3000583 D flagellar hook-length control protein 2999297..3000583 Photorhabdus asymbiotica 8168123 YP_003041456.1 CDS fliL NC_012962.1 3000810 3001355 D interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 3000810..3001355 Photorhabdus asymbiotica 8168124 YP_003041457.1 CDS fliM NC_012962.1 3001361 3002365 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 3001361..3002365 Photorhabdus asymbiotica 8168125 YP_003041458.1 CDS fliN NC_012962.1 3002343 3002777 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 3002343..3002777 Photorhabdus asymbiotica 8168126 YP_003041459.1 CDS fliO NC_012962.1 3002779 3003231 D flagellar protein flio 3002779..3003231 Photorhabdus asymbiotica 8168127 YP_003041460.1 CDS fliP NC_012962.1 3003242 3003997 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 3003242..3003997 Photorhabdus asymbiotica 8168128 YP_003041461.1 CDS fliQ NC_012962.1 3004018 3004287 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 3004018..3004287 Photorhabdus asymbiotica 8168129 YP_003041462.1 CDS fliR NC_012962.1 3004290 3005072 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 3004290..3005072 Photorhabdus asymbiotica 8168130 YP_003041463.1 CDS PAU_02628 NC_012962.1 3006074 3007186 D histone deacetylase family protein 3006074..3007186 Photorhabdus asymbiotica 8168131 YP_003041464.1 CDS PAU_02629 NC_012962.1 3008642 3009562 R hypothetical protein complement(3008642..3009562) Photorhabdus asymbiotica 8165923 YP_003041465.1 CDS PAU_02630 NC_012962.1 3009562 3011148 R hypothetical protein complement(3009562..3011148) Photorhabdus asymbiotica 8165924 YP_003041466.1 CDS PAU_02631 NC_012962.1 3011218 3012147 R hypothetical protein complement(3011218..3012147) Photorhabdus asymbiotica 8165925 YP_003041467.1 CDS PAU_02632 NC_012962.1 3012144 3012908 R hypothetical protein complement(3012144..3012908) Photorhabdus asymbiotica 8165926 YP_003041468.1 CDS PAU_02633 NC_012962.1 3012978 3013898 R hypothetical protein complement(3012978..3013898) Photorhabdus asymbiotica 8165927 YP_003041469.1 CDS PAU_02634 NC_012962.1 3013895 3015490 R hypothetical protein complement(3013895..3015490) Photorhabdus asymbiotica 8165928 YP_003041470.1 CDS PAU_02635 NC_012962.1 3015560 3016480 R hypothetical protein complement(3015560..3016480) Photorhabdus asymbiotica 8165929 YP_003041471.1 CDS PAU_02636 NC_012962.1 3016480 3018072 R hypothetical protein complement(3016480..3018072) Photorhabdus asymbiotica 8165930 YP_003041472.1 CDS PAU_02637 NC_012962.1 3018082 3018351 R hypothetical protein complement(3018082..3018351) Photorhabdus asymbiotica 8165931 YP_003041473.1 CDS PAU_02638 NC_012962.1 3018386 3019219 R hypothetical protein complement(3018386..3019219) Photorhabdus asymbiotica 8165932 YP_003041474.1 CDS PAU_02639 NC_012962.1 3019219 3021258 R hypothetical protein complement(3019219..3021258) Photorhabdus asymbiotica 8165933 YP_003041475.1 CDS PAU_02640 NC_012962.1 3021771 3022094 D hypothetical protein 3021771..3022094 Photorhabdus asymbiotica 8165934 YP_003041476.1 CDS flgL NC_012962.1 3022191 3023156 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL complement(3022191..3023156) Photorhabdus asymbiotica 8165935 YP_003041477.1 CDS flgK NC_012962.1 3023241 3024884 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(3023241..3024884) Photorhabdus asymbiotica 8166558 YP_003041478.1 CDS flgJ NC_012962.1 3025014 3025955 R Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ complement(3025014..3025955) Photorhabdus asymbiotica 8166557 YP_003041479.1 CDS flgI NC_012962.1 3025955 3027070 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(3025955..3027070) Photorhabdus asymbiotica 8166556 YP_003041480.1 CDS flgH NC_012962.1 3027077 3027829 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(3027077..3027829) Photorhabdus asymbiotica 8166555 YP_003041481.1 CDS flgG NC_012962.1 3027903 3028685 R flagellar basal-body distal rod protein); flagellar basal-body rod protein flgg (distal rod protein) complement(3027903..3028685) Photorhabdus asymbiotica 8166554 YP_003041482.1 CDS flgF NC_012962.1 3028709 3029464 R flagellar basal-body proximal rod; flagellar basal-body rod protein flgf (putative proximal rod protein) complement(3028709..3029464) Photorhabdus asymbiotica 8166553 YP_003041483.1 CDS flgE NC_012962.1 3029483 3030697 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(3029483..3030697) Photorhabdus asymbiotica 8166552 YP_003041484.1 CDS flgD NC_012962.1 3030726 3031424 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein complement(3030726..3031424) Photorhabdus asymbiotica 8166551 YP_003041485.1 CDS flgC NC_012962.1 3031437 3031841 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(3031437..3031841) Photorhabdus asymbiotica 8166550 YP_003041486.1 CDS flgB NC_012962.1 3031847 3032260 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB complement(3031847..3032260) Photorhabdus asymbiotica 8166549 YP_003041487.1 CDS flgA NC_012962.1 3032492 3033151 D flagella basal body p-ring formation; flagella basal body p-ring formation protein flga 3032492..3033151 Photorhabdus asymbiotica 8166548 YP_003041488.1 CDS flgM NC_012962.1 3033277 3033579 D regulates the flagellar specific sigma28 transcription factor; anti-sigma28 factor FlgM 3033277..3033579 Photorhabdus asymbiotica 8166547 YP_003041489.1 CDS flgN NC_012962.1 3033591 3034031 D flagellar biosynthesis protein; flagellar biosynthesis protein (flagella synthesis protein flgn) 3033591..3034031 Photorhabdus asymbiotica 8166559 YP_003041490.1 CDS PAU_02655 NC_012962.1 3034093 3035580 R hypothetical protein complement(3034093..3035580) Photorhabdus asymbiotica 8166560 YP_003041491.1 CDS PAU_02656 NC_012962.1 3035604 3037136 R hypothetical protein complement(3035604..3037136) Photorhabdus asymbiotica 8165936 YP_003041492.1 CDS PAU_02657 NC_012962.1 3037185 3038654 R hypothetical protein complement(3037185..3038654) Photorhabdus asymbiotica 8165937 YP_003041493.1 CDS PAU_02658 NC_012962.1 3038741 3040204 R hypothetical protein complement(3038741..3040204) Photorhabdus asymbiotica 8165938 YP_003041494.1 CDS PAU_02659 NC_012962.1 3040275 3041735 R hypothetical protein complement(3040275..3041735) Photorhabdus asymbiotica 8165939 YP_003041495.1 CDS PAU_02660 NC_012962.1 3041809 3043290 R hypothetical protein complement(3041809..3043290) Photorhabdus asymbiotica 8165940 YP_003041496.1 CDS PAU_02661 NC_012962.1 3043367 3043768 R hypothetical protein complement(3043367..3043768) Photorhabdus asymbiotica 8165941 YP_003041497.1 CDS PAU_02662 NC_012962.1 3043787 3045397 R hypothetical protein complement(3043787..3045397) Photorhabdus asymbiotica 8165942 YP_003041498.1 CDS PAU_02663 NC_012962.1 3045472 3045978 R hypothetical protein complement(3045472..3045978) Photorhabdus asymbiotica 8165943 YP_003041499.1 CDS PAU_02664 NC_012962.1 3046874 3047293 R hypothetical protein complement(3046874..3047293) Photorhabdus asymbiotica 8165944 YP_003041500.1 CDS flhA NC_012962.1 3048115 3050196 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(3048115..3050196) Photorhabdus asymbiotica 8165945 YP_003041501.1 CDS flhB NC_012962.1 3050189 3051340 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(3050189..3051340) Photorhabdus asymbiotica 8166561 YP_003041502.1 CDS pyoS3A NC_012962.1 3051735 3053414 D killer protein of pyocin s3 3051735..3053414 Photorhabdus asymbiotica 8166562 YP_003041503.1 CDS PAU_02668 NC_012962.1 3053414 3053881 D pyocin s3 immunity protein 3053414..3053881 Photorhabdus asymbiotica 8165119 YP_003041504.1 CDS PAU_02669 NC_012962.1 3053985 3054443 D pyocin s3 immunity protein 3053985..3054443 Photorhabdus asymbiotica 8165946 YP_003041505.1 CDS PAU_02670 NC_012962.1 3055551 3055973 R hypothetical protein complement(3055551..3055973) Photorhabdus asymbiotica 8165947 YP_003041506.1 CDS PAU_02671 NC_012962.1 3056690 3058540 R involved in the biosynthesis of a polyketide antibiotic; beta-ketoacyl synthase:phosphopantetheine binding complement(3056690..3058540) Photorhabdus asymbiotica 8165948 YP_003041507.1 CDS PAU_02672 NC_012962.1 3058533 3060053 R branched-chain alpha-keto acid dehydrogenase subunit E2 complement(3058533..3060053) Photorhabdus asymbiotica 8165949 YP_003041508.1 CDS PAU_02673 NC_012962.1 3060063 3062075 R 3-methyl-2-oxobutanoate dehydrogenase complement(3060063..3062075) Photorhabdus asymbiotica 8165950 YP_003041509.1 CDS PAU_02674 NC_012962.1 3065615 3066433 D hypothetical protein 3065615..3066433 Photorhabdus asymbiotica 8165951 YP_003041510.1 CDS syrE NC_012962.1 3066617 3078976 D antibiotic synthesis; syringomycin synthetase; complete genome; segment 7/17 3066617..3078976 Photorhabdus asymbiotica 8165952 YP_003041511.1 CDS PAU_02677 NC_012962.1 3078973 3080238 D the region plays an important role in metal-tetracycline transport; it perhaps acts as a gate that opens on the charge-charge interaction between Asp66 and the metal-tetracycline.; tetracycline-efflux transporter 3078973..3080238 Photorhabdus asymbiotica 8167463 YP_003041512.1 CDS acmB NC_012962.1 3080267 3083464 D This domain is found in many multi-domain enzymes which synthesize peptide antibiotics.; antibiotic synthetase 3080267..3083464 Photorhabdus asymbiotica 8165953 YP_003041513.1 CDS PAU_02679 NC_012962.1 3083512 3083874 D hypothetical protein 3083512..3083874 Photorhabdus asymbiotica 8166731 YP_003041514.1 CDS cheZ NC_012962.1 3084291 3084941 R cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ complement(3084291..3084941) Photorhabdus asymbiotica 8165954 YP_003041515.1 CDS cheY NC_012962.1 3084951 3085340 R chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY complement(3084951..3085340) Photorhabdus asymbiotica 8168563 YP_003041516.1 CDS cheB NC_012962.1 3085537 3086547 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(3085537..3086547) Photorhabdus asymbiotica 8168562 YP_003041517.1 CDS cheR NC_012962.1 3086582 3087394 R methylates the MCP; chemotaxis methyltransferase CheR complement(3086582..3087394) Photorhabdus asymbiotica 8168558 YP_003041518.1 CDS tap NC_012962.1 3087476 3089110 R chemotaxis; methyl-accepting chemotaxis protein iv, peptide sensor receptor complement(3087476..3089110) Photorhabdus asymbiotica 8168560 YP_003041519.1 CDS cheD NC_012962.1 3089164 3090858 R chemotaxis; methyl-accepting chemotaxis protein i (mcp-i) (serine chemorecepto protein) complement(3089164..3090858) Photorhabdus asymbiotica 8167466 YP_003041520.1 CDS cheW NC_012962.1 3091026 3091523 R chemotaxis; purine-binding chemotaxis protein complement(3091026..3091523) Photorhabdus asymbiotica 8168559 YP_003041521.1 CDS cheA NC_012962.1 3091577 3093622 R chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA complement(3091577..3093622) Photorhabdus asymbiotica 8168561 YP_003041522.1 CDS motB NC_012962.1 3093638 3094621 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(3093638..3094621) Photorhabdus asymbiotica 8168557 YP_003041523.1 CDS motA NC_012962.1 3094618 3095505 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(3094618..3095505) Photorhabdus asymbiotica 8166353 YP_003041524.1 CDS flhC NC_012962.1 3095643 3096224 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC complement(3095643..3096224) Photorhabdus asymbiotica 8166352 YP_003041525.1 CDS flhD NC_012962.1 3096227 3096577 R with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD complement(3096227..3096577) Photorhabdus asymbiotica 8167208 YP_003041526.1 CDS mgtA NC_012962.1 3098881 3099201 R magnesium-transporting ATPase, P-type 1 complement(3098881..3099201) Photorhabdus asymbiotica 8168113 YP_003041527.1 CDS cox2 NC_012962.1 3099560 3099721 R hypothetical protein complement(3099560..3099721) Photorhabdus asymbiotica 8166323 YP_003041528.1 CDS PAU_02694 NC_012962.1 3100001 3100711 R Mg(2) transporter ATPase protein C complement(3100001..3100711) Photorhabdus asymbiotica 8169086 YP_003041529.1 CDS cspC NC_012962.1 3101155 3101367 R 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature; cold shock-like protein cspc (csp-c) complement(3101155..3101367) Photorhabdus asymbiotica 8165955 YP_003041530.1 CDS ylaC NC_012962.1 3101849 3102367 D putative inner membrane protein ylac 3101849..3102367 Photorhabdus asymbiotica 8169103 YP_003041531.1 CDS PAU_02697 NC_012962.1 3102688 3103761 R hypothetical protein complement(3102688..3103761) Photorhabdus asymbiotica 8166978 YP_003041532.1 CDS pyrC NC_012962.1 3104983 3106170 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3104983..3106170 Photorhabdus asymbiotica 8166980 YP_003041533.1 CDS bssS NC_012962.1 3106372 3106626 D BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS 3106372..3106626 Photorhabdus asymbiotica 8165121 YP_003041534.1 CDS rcsA NC_012962.1 3106826 3107428 D colanic acid capsular biosynthesis activation protein a 3106826..3107428 Photorhabdus asymbiotica 8166627 YP_003041535.1 CDS yceA NC_012962.1 3107488 3108546 R hypothetical protein complement(3107488..3108546) Photorhabdus asymbiotica 8165145 YP_003041536.1 CDS dinI NC_012962.1 3108754 3108990 R dna-damage-inducible protein i complement(3108754..3108990) Photorhabdus asymbiotica 8166619 YP_003041537.1 CDS htrB NC_012962.1 3109324 3110265 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 3109324..3110265 Photorhabdus asymbiotica 8168621 YP_003041538.1 CDS yceE NC_012962.1 3110846 3112384 D putative proton dependent di-tripeptide transporter 3110846..3112384 Photorhabdus asymbiotica 8167338 YP_003041539.1 CDS PAU_02705 NC_012962.1 3112452 3113162 R arac-type transcription regulator complement(3112452..3113162) Photorhabdus asymbiotica 8166622 YP_003041540.1 CDS csaA NC_012962.1 3113219 3113554 R methionine--tRNA ligase protein complement(3113219..3113554) Photorhabdus asymbiotica 8165957 YP_003041541.1 CDS L0134 NC_012962.1 3113699 3114070 R hypothetical protein complement(3113699..3114070) Photorhabdus asymbiotica 8169099 YP_003041542.1 CDS PAU_02708 NC_012962.1 3114277 3115110 R hypothetical protein complement(3114277..3115110) Photorhabdus asymbiotica 8165068 YP_003041543.1 CDS PAU_02709 NC_012962.1 3115415 3116926 D putative methylmalonate-semialdehyde dehydrogenase 3115415..3116926 Photorhabdus asymbiotica 8165958 YP_003041544.1 CDS PAU_02710 NC_012962.1 3116928 3118877 D hypothetical protein 3116928..3118877 Photorhabdus asymbiotica 8165959 YP_003041545.1 CDS idhA NC_012962.1 3119241 3120227 D putative myo-inositol 2-dehydrogenase 3119241..3120227 Photorhabdus asymbiotica 8165960 YP_003041546.1 CDS yidK NC_012962.1 3120341 3122020 D uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; putative symporter YidK 3120341..3122020 Photorhabdus asymbiotica 8167351 YP_003041547.1 CDS PAU_02713 NC_012962.1 3122386 3123519 D putative oxidoreductase 3122386..3123519 Photorhabdus asymbiotica 8164949 YP_003041548.1 CDS PAU_02714 NC_012962.1 3123592 3125496 D hypothetical protein 3123592..3125496 Photorhabdus asymbiotica 8165961 YP_003041549.1 CDS PAU_02715 NC_012962.1 3125536 3126426 D hypothetical protein 3125536..3126426 Photorhabdus asymbiotica 8165962 YP_003041550.1 CDS PAU_02717 NC_012962.1 3126474 3127301 D similar to myo-inositol catabolism iolb of bacillus subtilis; hypothetical protein 3126474..3127301 Photorhabdus asymbiotica 8165963 YP_003041551.1 CDS PAU_02718 NC_012962.1 3127977 3128531 R hypothetical protein complement(3127977..3128531) Photorhabdus asymbiotica 8165964 YP_003041552.1 CDS PAU_02719 NC_012962.1 3128541 3129554 R hypothetical protein complement(3128541..3129554) Photorhabdus asymbiotica 8165965 YP_003041553.1 CDS PAU_02720 NC_012962.1 3129577 3130539 R hypothetical protein complement(3129577..3130539) Photorhabdus asymbiotica 8165966 YP_003041554.1 CDS PAU_02721 NC_012962.1 3130536 3131891 R hypothetical protein complement(3130536..3131891) Photorhabdus asymbiotica 8165967 YP_003041555.1 CDS PAU_02722 NC_012962.1 3132114 3133103 R hypothetical protein complement(3132114..3133103) Photorhabdus asymbiotica 8165968 YP_003041556.1 CDS PAU_02723 NC_012962.1 3135414 3135809 R hypothetical protein complement(3135414..3135809) Photorhabdus asymbiotica 8165969 YP_003041557.1 CDS PAU_02724 NC_012962.1 3135806 3136771 R putative membrane protein precursor complement(3135806..3136771) Photorhabdus asymbiotica 8165970 YP_003041558.1 CDS PAU_02725 NC_012962.1 3137314 3139650 R hypothetical protein complement(3137314..3139650) Photorhabdus asymbiotica 8165971 YP_003041559.1 CDS PAU_02726 NC_012962.1 3139747 3140106 R hypothetical protein complement(3139747..3140106) Photorhabdus asymbiotica 8165972 YP_003041560.1 CDS PAU_02727 NC_012962.1 3140239 3141330 R hypothetical protein complement(3140239..3141330) Photorhabdus asymbiotica 8165973 YP_003041561.1 CDS H0160 NC_012962.1 3141327 3142133 R hypothetical protein complement(3141327..3142133) Photorhabdus asymbiotica 8165974 YP_003041562.1 CDS PAU_02729 NC_012962.1 3142767 3143723 R hypothetical protein complement(3142767..3143723) Photorhabdus asymbiotica 8169275 YP_003041563.1 CDS PAU_02730 NC_012962.1 3143868 3145082 R putative prophage integrase complement(3143868..3145082) Photorhabdus asymbiotica 8165975 YP_003041564.1 CDS tusE NC_012962.1 3145354 3145857 D sulfurtransferase TusE 3145354..3145857 Photorhabdus asymbiotica 8166981 YP_003041565.1 CDS PAU_02732 NC_012962.1 3145870 3146148 R acylphosphatase (acylphosphate phosphohydrolase) complement(3145870..3146148) Photorhabdus asymbiotica 8168383 YP_003041566.1 CDS yccV NC_012962.1 3146344 3146676 D heat shock protein HspQ 3146344..3146676 Photorhabdus asymbiotica 8165977 YP_003041567.1 CDS PAU_02734 NC_012962.1 3146796 3148151 R hypothetical protein complement(3146796..3148151) Photorhabdus asymbiotica 8166616 YP_003041568.1 CDS PAU_02735 NC_012962.1 3149544 3152828 R hypothetical protein complement(3149544..3152828) Photorhabdus asymbiotica 8165978 YP_003041569.1 CDS PAU_02736 NC_012962.1 3152825 3153088 R hypothetical protein complement(3152825..3153088) Photorhabdus asymbiotica 8165979 YP_003041570.1 CDS PAU_02737 NC_012962.1 3153508 3153984 R hypothetical protein complement(3153508..3153984) Photorhabdus asymbiotica 8165980 YP_003041571.1 CDS PAU_02738 NC_012962.1 3154572 3154985 R hypothetical protein complement(3154572..3154985) Photorhabdus asymbiotica 8165981 YP_003041572.1 CDS mgsA NC_012962.1 3155100 3155558 D catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 3155100..3155558 Photorhabdus asymbiotica 8165982 YP_003041573.1 CDS helD NC_012962.1 3155607 3157661 R catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV complement(3155607..3157661) Photorhabdus asymbiotica 8166322 YP_003041574.1 CDS yccS NC_012962.1 3157781 3159928 D hypothetical protein 3157781..3159928 Photorhabdus asymbiotica 8169289 YP_003041575.1 CDS yccR NC_012962.1 3159980 3160582 R hypothetical protein complement(3159980..3160582) Photorhabdus asymbiotica 8166615 YP_003041576.1 CDS sulA NC_012962.1 3160768 3161346 D ccumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments.; SOS cell division inhibitor 3160768..3161346 Photorhabdus asymbiotica 8166614 YP_003041577.1 CDS ompA NC_012962.1 3161904 3163004 D OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A 3161904..3163004 Photorhabdus asymbiotica 8165490 YP_003041578.1 CDS ycbG NC_012962.1 3163144 3163731 R hypothetical protein complement(3163144..3163731) Photorhabdus asymbiotica 8166398 YP_003041579.1 CDS PAU_02746 NC_012962.1 3163738 3165534 D putative protease la-like protein 3163738..3165534 Photorhabdus asymbiotica 8166610 YP_003041580.1 CDS fabA NC_012962.1 3165555 3166136 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 3165555..3166136 Photorhabdus asymbiotica 8165983 YP_003041581.1 CDS PAU_02748 NC_012962.1 3166553 3166891 D hypothetical protein 3166553..3166891 Photorhabdus asymbiotica 8166489 YP_003041582.1 CDS ymbA NC_012962.1 3167710 3168273 R hypothetical protein complement(3167710..3168273) Photorhabdus asymbiotica 8167862 YP_003041583.1 CDS pqiB NC_012962.1 3168270 3169919 R paraquat-inducible protein B complement(3168270..3169919) Photorhabdus asymbiotica 8164995 YP_003041584.1 CDS pqiA NC_012962.1 3169940 3171187 R paraquat-inducible protein A complement(3169940..3171187) Photorhabdus asymbiotica 8168306 YP_003041585.1 CDS uup NC_012962.1 3171276 3173186 R Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase component complement(3171276..3173186) Photorhabdus asymbiotica 8168305 YP_003041586.1 CDS rlmL NC_012962.1 3173192 3175324 R catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase complement(3173192..3175324) Photorhabdus asymbiotica 8168430 YP_003041587.1 CDS PAU_02754 NC_012962.1 3175414 3176526 D similar to probable iron-sulfur protein ycbx of escherichia coli; hypothetical protein 3175414..3176526 Photorhabdus asymbiotica 8166613 YP_003041588.1 CDS PAU_02755 NC_012962.1 3176776 3178074 D putative glycosyltransferase 3176776..3178074 Photorhabdus asymbiotica 8168600 YP_003041589.1 CDS PAU_02756 NC_012962.1 3178286 3179584 D putative glycosyltransferase 3178286..3179584 Photorhabdus asymbiotica 8166400 YP_003041590.1 CDS PAU_02757 NC_012962.1 3179820 3181118 D putative glycosyltransferase 3179820..3181118 Photorhabdus asymbiotica 8166401 YP_003041591.1 CDS PAU_02758 NC_012962.1 3181597 3182142 R hypothetical protein complement(3181597..3182142) Photorhabdus asymbiotica 8166402 YP_003041592.1 CDS pyrD NC_012962.1 3182334 3183344 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(3182334..3183344) Photorhabdus asymbiotica 8166403 YP_003041593.1 CDS PAU_02760 NC_012962.1 3184142 3184678 D hypothetical protein 3184142..3184678 Photorhabdus asymbiotica 8165122 YP_003041594.1 CDS pepN NC_012962.1 3184913 3187525 R aminopeptidase N complement(3184913..3187525) Photorhabdus asymbiotica 8166404 YP_003041595.1 CDS pncB NC_012962.1 3187871 3189085 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 3187871..3189085 Photorhabdus asymbiotica 8168697 YP_003041596.1 CDS asnC NC_012962.1 3189207 3190694 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 3189207..3190694 Photorhabdus asymbiotica 8168284 YP_003041597.1 CDS ompN1 NC_012962.1 3191018 3192163 D outer membrane protein ompN 3191018..3192163 Photorhabdus asymbiotica 8165519 YP_003041598.1 CDS ompN2 NC_012962.1 3192667 3193845 D outer membrane protein n (porin ompn) 3192667..3193845 Photorhabdus asymbiotica 8165572 YP_003041599.1 CDS aspC NC_012962.1 3194009 3195271 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 3194009..3195271 Photorhabdus asymbiotica 8165573 YP_003041600.1 CDS ycbL NC_012962.1 3195517 3196164 R hypothetical protein complement(3195517..3196164) Photorhabdus asymbiotica 8165522 YP_003041601.1 CDS ycbK NC_012962.1 3196210 3196797 R similar to putative exported protein ycbk of escherichia coli; hypothetical protein complement(3196210..3196797) Photorhabdus asymbiotica 8166612 YP_003041602.1 CDS PAU_02769 NC_012962.1 3196858 3198564 R putative carboxypeptidase; hypothetical protein complement(3196858..3198564) Photorhabdus asymbiotica 8166611 YP_003041603.1 CDS PAU_02770 NC_012962.1 3199006 3199662 R transcriptional regulator, tetr family complement(3199006..3199662) Photorhabdus asymbiotica 8166405 YP_003041604.1 CDS PAU_02771 NC_012962.1 3199834 3201147 D similar to putative monooxygenase; hypothetical protein 3199834..3201147 Photorhabdus asymbiotica 8166406 YP_003041605.1 CDS JM12 NC_012962.1 3202325 3202621 D transposase 3202325..3202621 Photorhabdus asymbiotica 8166407 YP_003041606.1 CDS PAU_02773 NC_012962.1 3202667 3203035 R hypothetical protein complement(3202667..3203035) Photorhabdus asymbiotica 8165047 YP_003041607.1 CDS PAU_02774 NC_012962.1 3203044 3203247 R hypothetical protein complement(3203044..3203247) Photorhabdus asymbiotica 8166408 YP_003041608.1 CDS ISPlu13C NC_012962.1 3203548 3204009 D transposase, IS110 familly (transposase, IS110 family) 3203548..3204009 Photorhabdus asymbiotica 8166409 YP_003041609.1 CDS bfpE NC_012962.1 3204099 3205196 R involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) , have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane.; type II secretion system complement(3204099..3205196) Photorhabdus asymbiotica 8165035 YP_003041610.1 CDS pilQ NC_012962.1 3205204 3206760 R type ii secretion system protein complement(3205204..3206760) Photorhabdus asymbiotica 8165556 YP_003041611.1 CDS PAU_02778 NC_012962.1 3206784 3207287 R hypothetical protein complement(3206784..3207287) Photorhabdus asymbiotica 8168750 YP_003041612.1 CDS pilO NC_012962.1 3207310 3208611 R similar to pilo; hypothetical protein complement(3207310..3208611) Photorhabdus asymbiotica 8166410 YP_003041613.1 CDS pilN NC_012962.1 3208615 3210216 R outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. Proteins in this entry appear to be secretins for pilus formation, although they are quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus; piln (lipoprotein) complement(3208615..3210216) Photorhabdus asymbiotica 8168749 YP_003041614.1 CDS pilL NC_012962.1 3210221 3210592 R hypothetical protein complement(3210221..3210592) Photorhabdus asymbiotica 8168748 YP_003041615.1 CDS PAU_02782 NC_012962.1 3210648 3211172 R hypothetical protein complement(3210648..3211172) Photorhabdus asymbiotica 8168747 YP_003041616.1 CDS pilV NC_012962.1 3211257 3212810 R secondary type iv prepilin complement(3211257..3212810) Photorhabdus asymbiotica 8166411 YP_003041617.1 CDS pppA NC_012962.1 3212925 3213722 R The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens.; type 4 prepilin-like proteins leader peptide processing enzyme (pecti enzymes secretion protein outo) complement(3212925..3213722) Photorhabdus asymbiotica 8168751 YP_003041618.1 CDS PAU_02786 NC_012962.1 3213795 3214370 R most often found at the N-terminus of pilins and other proteins involved in secretion; type IV prepilin complement(3213795..3214370) Photorhabdus asymbiotica 8168301 YP_003041619.1 CDS PAU_02787 NC_012962.1 3215013 3215801 R conserved membrane protein, multidrug efflux associated complement(3215013..3215801) Photorhabdus asymbiotica 8166412 YP_003041620.1 CDS PAU_02788 NC_012962.1 3215803 3216627 R abc transporter integral membrane protein complement(3215803..3216627) Photorhabdus asymbiotica 8166413 YP_003041621.1 CDS PAU_02789 NC_012962.1 3216652 3217617 R abc transporter atp-binding protein complement(3216652..3217617) Photorhabdus asymbiotica 8166414 YP_003041622.1 CDS afp1 NC_012962.1 3218747 3219196 D hypothetical protein 3218747..3219196 Photorhabdus asymbiotica 8166415 YP_003041623.1 CDS afp2 NC_012962.1 3219411 3220490 D hypothetical protein 3219411..3220490 Photorhabdus asymbiotica 8166745 YP_003041624.1 CDS afp3 NC_012962.1 3220502 3221914 D hypothetical protein 3220502..3221914 Photorhabdus asymbiotica 8166753 YP_003041625.1 CDS afp4 NC_012962.1 3221963 3223168 D hypothetical protein 3221963..3223168 Photorhabdus asymbiotica 8166754 YP_003041626.1 CDS afp5 NC_012962.1 3223182 3223640 D hypothetical protein 3223182..3223640 Photorhabdus asymbiotica 8166755 YP_003041627.1 CDS afp7 NC_012962.1 3223803 3224486 D hypothetical protein 3223803..3224486 Photorhabdus asymbiotica 8166757 YP_003041628.1 CDS PAU_02796 NC_012962.1 3224483 3226084 D hypothetical protein 3224483..3226084 Photorhabdus asymbiotica 8166758 YP_003041629.1 CDS afp9 NC_012962.1 3226097 3226543 D hypothetical protein 3226097..3226543 Photorhabdus asymbiotica 8166416 YP_003041630.1 CDS afp10 NC_012962.1 3226540 3226956 D hypothetical protein 3226540..3226956 Photorhabdus asymbiotica 8166759 YP_003041631.1 CDS afp11 NC_012962.1 3227165 3229873 D hypothetical protein 3227165..3229873 Photorhabdus asymbiotica 8166747 YP_003041632.1 CDS afp12 NC_012962.1 3229870 3233223 D hypothetical protein 3229870..3233223 Photorhabdus asymbiotica 8166749 YP_003041633.1 CDS PAU_02801 NC_012962.1 3233333 3234553 D hypothetical protein 3233333..3234553 Photorhabdus asymbiotica 8166750 YP_003041634.1 CDS orf25 NC_012962.1 3234617 3236272 D hypothetical protein 3234617..3236272 Photorhabdus asymbiotica 8166417 YP_003041635.1 CDS PAU_02803 NC_012962.1 3236282 3238369 D hypothetical protein 3236282..3238369 Photorhabdus asymbiotica 8165594 YP_003041636.1 CDS PAU_02804 NC_012962.1 3238394 3239296 D hypothetical protein 3238394..3239296 Photorhabdus asymbiotica 8166418 YP_003041637.1 CDS hrpN NC_012962.1 3239368 3240351 D hypothetical protein 3239368..3240351 Photorhabdus asymbiotica 8166419 YP_003041638.1 CDS PAU_02806 NC_012962.1 3240543 3241511 D hypothetical protein 3240543..3241511 Photorhabdus asymbiotica 8167325 YP_003041639.1 CDS PAU_02807 NC_012962.1 3242089 3242991 D hypothetical protein 3242089..3242991 Photorhabdus asymbiotica 8166420 YP_003041640.1 CDS PAU_02808 NC_012962.1 3243541 3244632 D similar to photopexin a/b; hypothetical protein 3243541..3244632 Photorhabdus asymbiotica 8166421 YP_003041641.1 CDS yfaD NC_012962.1 3245424 3246374 R putative transposase complement(3245424..3246374) Photorhabdus asymbiotica 8166422 YP_003041642.1 CDS yefM NC_012962.1 3246521 3246760 R similar to antitoxin yefm; hypothetical protein complement(3246521..3246760) Photorhabdus asymbiotica 8165477 YP_003041643.1 CDS mukB NC_012962.1 3247187 3251635 R SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB complement(3247187..3251635) Photorhabdus asymbiotica 8165460 YP_003041644.1 CDS mukE NC_012962.1 3251632 3252381 R acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E complement(3251632..3252381) Photorhabdus asymbiotica 8166394 YP_003041645.1 CDS mukF NC_012962.1 3252335 3253657 R acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F complement(3252335..3253657) Photorhabdus asymbiotica 8166395 YP_003041646.1 CDS smtA NC_012962.1 3253654 3254454 R involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA complement(3253654..3254454) Photorhabdus asymbiotica 8166396 YP_003041647.1 CDS ycbC NC_012962.1 3254593 3255429 D hypothetical protein 3254593..3255429 Photorhabdus asymbiotica 8167660 YP_003041648.1 CDS kdsB NC_012962.1 3255512 3256261 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(3255512..3256261) Photorhabdus asymbiotica 8166609 YP_003041649.1 CDS ycaR NC_012962.1 3256265 3256444 R hypothetical protein complement(3256265..3256444) Photorhabdus asymbiotica 8165058 YP_003041650.1 CDS lpxK NC_012962.1 3257453 3258448 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(3257453..3258448) Photorhabdus asymbiotica 8166608 YP_003041651.1 CDS msbA NC_012962.1 3258445 3260190 R involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease protein complement(3258445..3260190) Photorhabdus asymbiotica 8168923 YP_003041652.1 CDS ycaI NC_012962.1 3260229 3262592 R hypothetical protein complement(3260229..3262592) Photorhabdus asymbiotica 8166383 YP_003041653.1 CDS PAU_02821 NC_012962.1 3263133 3263954 D hypothetical protein 3263133..3263954 Photorhabdus asymbiotica 8166605 YP_003041654.1 CDS PAU_02822 NC_012962.1 3263959 3264594 D putative integral membrane protein 3263959..3264594 Photorhabdus asymbiotica 8166423 YP_003041655.1 CDS imm2 NC_012962.1 3264745 3264888 R This family includes bacterial colicin and pyocin immunity proteins . These immunity proteins can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity.; colicin immunity protein/pyocin immunity protein complement(3264745..3264888) Photorhabdus asymbiotica 8166424 YP_003041656.1 CDS PAU_02824 NC_012962.1 3264994 3265791 R pyocins cause breakdown of chromosomal DNA and complete inhibition of lipid synthesis in sensitive cells; putative pyocin-like protein complement(3264994..3265791) Photorhabdus asymbiotica 8167367 YP_003041657.1 CDS PAU_02826 NC_012962.1 3265808 3266188 R similar to pyocin s2 and s1; Similar to central portion of Escherichia coli O6:K15:H31 (strain 536/UPEC) putative colicin. UniProt:Q0TLM8 (EMBL:CP000247) (593 aa) fasta scores: E()=0.0037, 51.923 38d in 52 aa, and to central portion of Photorhabdus luminescens subsp. laumondii similar to pyocin s2 and s1. UniProt:Q7N5Q1 (EMBL:BX571865) (562 aa) fasta scores: E()=8.1e-29, 72.174 38d in 115 aa; putative pyocin-like protein complement(3265808..3266188) Photorhabdus asymbiotica 8166425 YP_003041658.1 CDS ihfB NC_012962.1 3267141 3267425 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(3267141..3267425) Photorhabdus asymbiotica 8166426 YP_003041659.1 CDS rpsA NC_012962.1 3267490 3269199 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(3267490..3269199) Photorhabdus asymbiotica 8167355 YP_003041660.1 CDS cmk NC_012962.1 3269337 3270029 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(3269337..3270029) Photorhabdus asymbiotica 8165737 YP_003041661.1 CDS aroA NC_012962.1 3270210 3271505 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(3270210..3271505) Photorhabdus asymbiotica 8168584 YP_003041662.1 CDS serC NC_012962.1 3271625 3272713 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(3271625..3272713) Photorhabdus asymbiotica 8165498 YP_003041663.1 CDS PAU_02832 NC_012962.1 3272879 3273370 R similar to putative acetyltransferase; hypothetical protein complement(3272879..3273370) Photorhabdus asymbiotica 8167639 YP_003041664.1 CDS PAU_02833 NC_012962.1 3273379 3273654 R hypothetical protein complement(3273379..3273654) Photorhabdus asymbiotica 8166427 YP_003041665.1 CDS ansB NC_012962.1 3274082 3275125 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II complement(3274082..3275125) Photorhabdus asymbiotica 8166428 YP_003041666.1 CDS ycaO NC_012962.1 3275255 3277027 D hypothetical protein 3275255..3277027 Photorhabdus asymbiotica 8166785 YP_003041667.1 CDS focA NC_012962.1 3277344 3278201 D formate transporter 3277344..3278201 Photorhabdus asymbiotica 8166607 YP_003041668.1 CDS pflB NC_012962.1 3278258 3280540 D formate acetyltransferase i (pyruvate formate-lyase 1) 3278258..3280540 Photorhabdus asymbiotica 8168141 YP_003041669.1 CDS pflA NC_012962.1 3280614 3281354 D activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 3280614..3281354 Photorhabdus asymbiotica 8168709 YP_003041670.1 CDS PAU_02839 NC_012962.1 3281969 3282829 D putative transmembrane protein 3281969..3282829 Photorhabdus asymbiotica 8168708 YP_003041671.1 CDS PAU_02840 NC_012962.1 3283541 3284353 D putative transmembrane protein 3283541..3284353 Photorhabdus asymbiotica 8166429 YP_003041672.1 CDS serS NC_012962.1 3284437 3285726 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(3284437..3285726) Photorhabdus asymbiotica 8166430 YP_003041673.1 CDS ycaJ NC_012962.1 3285831 3287174 R recombination factor protein RarA complement(3285831..3287174) Photorhabdus asymbiotica 8167640 YP_003041674.1 CDS lolA NC_012962.1 3287182 3287793 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(3287182..3287793) Photorhabdus asymbiotica 8166606 YP_003041675.1 CDS ftsK NC_012962.1 3287868 3291356 R cell division protein; dna translocase ftsk complement(3287868..3291356) Photorhabdus asymbiotica 8165093 YP_003041676.1 CDS lrp NC_012962.1 3291487 3291981 R mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator complement(3291487..3291981) Photorhabdus asymbiotica 8168165 YP_003041677.1 CDS trxB NC_012962.1 3292489 3293451 D thioredoxin reductase 3292489..3293451 Photorhabdus asymbiotica 8168926 YP_003041678.1 CDS cydD NC_012962.1 3293580 3295349 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 3293580..3295349 Photorhabdus asymbiotica 8168374 YP_003041679.1 CDS cydC NC_012962.1 3295351 3297102 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 3295351..3297102 Photorhabdus asymbiotica 8169123 YP_003041680.1 CDS aat NC_012962.1 3297109 3297810 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 3297109..3297810 Photorhabdus asymbiotica 8169122 YP_003041681.1 CDS infA NC_012962.1 3297955 3298173 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 3297955..3298173 Photorhabdus asymbiotica 8165260 YP_003041682.1 CDS clpA NC_012962.1 3298244 3300526 R ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit complement(3298244..3300526) Photorhabdus asymbiotica 8167369 YP_003041683.1 CDS clpS NC_012962.1 3300552 3300872 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(3300552..3300872) Photorhabdus asymbiotica 8168580 YP_003041684.1 CDS cspD NC_012962.1 3301218 3301439 D cold shock-like protein cspd (csp-d) 3301218..3301439 Photorhabdus asymbiotica 8168582 YP_003041685.1 CDS macB NC_012962.1 3301511 3303454 R with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease protein complement(3301511..3303454) Photorhabdus asymbiotica 8169104 YP_003041686.1 CDS macA NC_012962.1 3303454 3304566 R confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA complement(3303454..3304566) Photorhabdus asymbiotica 8168947 YP_003041687.1 CDS ybjE NC_012962.1 3304873 3305781 D similar to putative surface protein ybje of escherichia coli; hypothetical protein 3304873..3305781 Photorhabdus asymbiotica 8168945 YP_003041688.1 CDS artP NC_012962.1 3306083 3306811 D With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 3306083..3306811 Photorhabdus asymbiotica 8166597 YP_003041689.1 CDS artI NC_012962.1 3306831 3307565 D arginine-binding periplasmic protein 1 3306831..3307565 Photorhabdus asymbiotica 8165513 YP_003041690.1 CDS artQ NC_012962.1 3307579 3308295 D with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 3307579..3308295 Photorhabdus asymbiotica 8165511 YP_003041691.1 CDS artM NC_012962.1 3308295 3308963 D with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 3308295..3308963 Photorhabdus asymbiotica 8165514 YP_003041692.1 CDS rumB NC_012962.1 3309027 3310160 R RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase complement(3309027..3310160) Photorhabdus asymbiotica 8165512 YP_003041693.1 CDS ybjN NC_012962.1 3310185 3310697 R similar to putative sensory transduction regulator ybjn of escherichi coli; hypothetical protein complement(3310185..3310697) Photorhabdus asymbiotica 8167163 YP_003041694.1 CDS ybjC NC_012962.1 3310783 3311097 R YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein complement(3310783..3311097) Photorhabdus asymbiotica 8166599 YP_003041695.1 CDS grxA NC_012962.1 3311292 3311552 D functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 1 3311292..3311552 Photorhabdus asymbiotica 8166595 YP_003041696.1 CDS ybjG NC_012962.1 3312045 3312665 D undecaprenyl pyrophosphate phosphatase 3312045..3312665 Photorhabdus asymbiotica 8166982 YP_003041697.1 CDS sdaC NC_012962.1 3313584 3314942 D serine transporter sdac protein 3313584..3314942 Photorhabdus asymbiotica 8166598 YP_003041698.1 CDS cipA NC_012962.1 3315686 3316015 D hypothetical protein 3315686..3316015 Photorhabdus asymbiotica 8167620 YP_003041699.1 CDS cipA NC_012962.1 3316865 3317203 D hypothetical protein 3316865..3317203 Photorhabdus asymbiotica 8168575 YP_003041700.1 CDS PAU_02869 NC_012962.1 3317882 3318736 D hypothetical protein 3317882..3318736 Photorhabdus asymbiotica 8168576 YP_003041701.1 CDS dacC NC_012962.1 3318810 3320012 R present in the penicillin-binding protein family of beta-lactamases, which constitute the most common bacterial resistance mechanism against beta-lactam antibiotics . Beta-lactamases appear to have evolved from DD-transpeptidases, which are penicillin-binding proteins involved in cell wall biosynthesis, and as such are one of the main targets of beta-lactam antibiotics; penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidas fraction c) (dd-pept (dd-carboxypeptidase) (pbp-6)idase) complement(3318810..3320012) Photorhabdus asymbiotica 8166431 YP_003041702.1 CDS yliJ NC_012962.1 3320320 3320940 D glutathione s-transferase 3320320..3320940 Photorhabdus asymbiotica 8169151 YP_003041703.1 CDS yeeZ NC_012962.1 3320947 3321774 R putative enzyme of sugar metabolism complement(3320947..3321774) Photorhabdus asymbiotica 8164994 YP_003041704.1 CDS hisG NC_012962.1 3322135 3323145 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 3322135..3323145 Photorhabdus asymbiotica 8165459 YP_003041705.1 CDS hisCD NC_012962.1 3323152 3324468 D putative histidine biosynthesis bifunctional protein 3323152..3324468 Photorhabdus asymbiotica 8169319 YP_003041706.1 CDS hisCD NC_012962.1 3324465 3325574 D putative histidine biosynthesis bifunctional protein 3324465..3325574 Photorhabdus asymbiotica 8169317 YP_003041707.1 CDS hisB NC_012962.1 3325574 3326641 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 3325574..3326641 Photorhabdus asymbiotica 8169316 YP_003041708.1 CDS hisH NC_012962.1 3326638 3327231 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3326638..3327231 Photorhabdus asymbiotica 8169314 YP_003041709.1 CDS hisA1 NC_012962.1 3327237 3327974 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3327237..3327974 Photorhabdus asymbiotica 8169320 YP_003041710.1 CDS hisF NC_012962.1 3327956 3328732 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3327956..3328732 Photorhabdus asymbiotica 8169312 YP_003041711.1 CDS hisI NC_012962.1 3328726 3329331 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 3328726..3329331 Photorhabdus asymbiotica 8169318 YP_003041712.1 CDS yiaY NC_012962.1 3329487 3330692 R probable alcohol dehydrogenase complement(3329487..3330692) Photorhabdus asymbiotica 8169321 YP_003041713.1 CDS PAU_02882 NC_012962.1 3330940 3331431 D hypothetical protein 3330940..3331431 Photorhabdus asymbiotica 8168028 YP_003041714.1 CDS NCU04533.1 NC_012962.1 3332147 3332767 D hypothetical protein 3332147..3332767 Photorhabdus asymbiotica 8166432 YP_003041715.1 CDS NCU04533.1 NC_012962.1 3333615 3334322 D hypothetical protein 3333615..3334322 Photorhabdus asymbiotica 8166909 YP_003041716.1 CDS gnd NC_012962.1 3334520 3335962 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(3334520..3335962) Photorhabdus asymbiotica 8166910 YP_003041717.1 CDS yegH NC_012962.1 3336176 3337747 D hypothetical membrane protein yegh 3336176..3337747 Photorhabdus asymbiotica 8169249 YP_003041718.1 CDS PAU_02887 NC_012962.1 3338159 3338596 D similarities with spermidine acetyltransferase; hypothetical protein 3338159..3338596 Photorhabdus asymbiotica 8165461 YP_003041719.1 CDS asmA NC_012962.1 3338985 3340817 R YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; putative assembly protein complement(3338985..3340817) Photorhabdus asymbiotica 8166433 YP_003041720.1 CDS dcd NC_012962.1 3340873 3341487 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(3340873..3341487) Photorhabdus asymbiotica 8165516 YP_003041721.1 CDS udk NC_012962.1 3341509 3342150 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(3341509..3342150) Photorhabdus asymbiotica 8165409 YP_003041722.1 CDS mrp NC_012962.1 3342477 3343589 R putative ATPase complement(3342477..3343589) Photorhabdus asymbiotica 8168403 YP_003041723.1 CDS metG NC_012962.1 3343810 3345837 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3343810..3345837 Photorhabdus asymbiotica 8166380 YP_003041724.1 CDS yohJ NC_012962.1 3346001 3346468 D hypothetical protein 3346001..3346468 Photorhabdus asymbiotica 8168994 YP_003041725.1 CDS yohK NC_012962.1 3346471 3347166 D hypothetical protein 3346471..3347166 Photorhabdus asymbiotica 8165012 YP_003041726.1 CDS cdd NC_012962.1 3347314 3348198 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 3347314..3348198 Photorhabdus asymbiotica 8165013 YP_003041727.1 CDS sfcA NC_012962.1 3348405 3350102 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3348405..3350102 Photorhabdus asymbiotica 8168545 YP_003041728.1 CDS sanA NC_012962.1 3350203 3350979 D putative antibiotic resistance; hypothetical protein 3350203..3350979 Photorhabdus asymbiotica 8167641 YP_003041729.1 CDS PAU_02898 NC_012962.1 3350951 3352096 R hypothetical protein complement(3350951..3352096) Photorhabdus asymbiotica 8167169 YP_003041730.1 CDS folE NC_012962.1 3352121 3352789 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(3352121..3352789) Photorhabdus asymbiotica 8166434 YP_003041731.1 CDS yjiJ NC_012962.1 3352947 3354134 R putative transport protein complement(3352947..3354134) Photorhabdus asymbiotica 8168146 YP_003041732.1 CDS PAU_02901 NC_012962.1 3354718 3355464 D hypothetical protein 3354718..3355464 Photorhabdus asymbiotica 8164986 YP_003041733.1 CDS moeA NC_012962.1 3355798 3357060 D is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA 3355798..3357060 Photorhabdus asymbiotica 8166435 YP_003041734.1 CDS moeB NC_012962.1 3357060 3357812 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 3357060..3357812 Photorhabdus asymbiotica 8166349 YP_003041735.1 CDS PAU_02904 NC_012962.1 3357879 3359576 R putative ABC transporter ATP-binding protein complement(3357879..3359576) Photorhabdus asymbiotica 8166350 YP_003041736.1 CDS aac(6')-Ic NC_012962.1 3359700 3360041 R hypothetical protein complement(3359700..3360041) Photorhabdus asymbiotica 8166436 YP_003041737.1 CDS yqhD NC_012962.1 3360207 3361364 R hypothetical protein complement(3360207..3361364) Photorhabdus asymbiotica 8165259 YP_003041738.1 CDS PAU_02907 NC_012962.1 3361417 3362454 R hypothetical protein complement(3361417..3362454) Photorhabdus asymbiotica 8169167 YP_003041739.1 CDS ydhM NC_012962.1 3362577 3362753 R hypothetical protein complement(3362577..3362753) Photorhabdus asymbiotica 8166437 YP_003041740.1 CDS ydhM NC_012962.1 3362790 3363059 R putative hth-type transcriptional regulator ydhm complement(3362790..3363059) Photorhabdus asymbiotica 8165432 YP_003041741.1 CDS PAU_02910 NC_012962.1 3364148 3364558 D similar to 13.6 kda insecticidal crystal protein of bacillu thuringiensis 3364148..3364558 Photorhabdus asymbiotica 8165433 YP_003041742.1 CDS PAU_02911 NC_012962.1 3364777 3365340 R hypothetical protein complement(3364777..3365340) Photorhabdus asymbiotica 8166438 YP_003041743.1 CDS ybiF NC_012962.1 3365671 3366564 D similar to probable membrane protein ybif of escherichia coli; threonine and homoserine efflux system 3365671..3366564 Photorhabdus asymbiotica 8166439 YP_003041744.1 CDS dps NC_012962.1 3366848 3367354 D binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps 3366848..3367354 Photorhabdus asymbiotica 8166593 YP_003041745.1 CDS PAU_02914 NC_012962.1 3367560 3367781 D alkylphosphonate uptake protein PhnA 3367560..3367781 Photorhabdus asymbiotica 8168647 YP_003041746.1 CDS dinG NC_012962.1 3367842 3369971 R helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG complement(3367842..3369971) Photorhabdus asymbiotica 8166440 YP_003041747.1 CDS sseA NC_012962.1 3370463 3371299 D 3-mercaptopyruvate:cyanide sulfurtransferase 3370463..3371299 Photorhabdus asymbiotica 8168620 YP_003041748.1 CDS PAU_02917 NC_012962.1 3371899 3373029 D lipase/esterase-like protein 3371899..3373029 Photorhabdus asymbiotica 8167680 YP_003041749.1 CDS PAU_02918 NC_012962.1 3373553 3374668 D lipase/esterase-like protein 3373553..3374668 Photorhabdus asymbiotica 8166441 YP_003041750.1 CDS PAU_02919 NC_012962.1 3375003 3376091 D lipase/esterase-like protein 3375003..3376091 Photorhabdus asymbiotica 8166442 YP_003041751.1 CDS PAU_02920 NC_012962.1 3376561 3377673 D lipase/esterase-like protein 3376561..3377673 Photorhabdus asymbiotica 8166443 YP_003041752.1 CDS dusC NC_012962.1 3377759 3378691 R tRNA-dihydrouridine synthase C complement(3377759..3378691) Photorhabdus asymbiotica 8166444 YP_003041753.1 CDS rhlE NC_012962.1 3378775 3380109 R this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE complement(3378775..3380109) Photorhabdus asymbiotica 8168658 YP_003041754.1 CDS ybiH NC_012962.1 3380413 3381099 D putative DNA-binding transcriptional regulator 3380413..3381099 Photorhabdus asymbiotica 8165175 YP_003041755.1 CDS ybhG NC_012962.1 3381116 3382108 D hypothetical protein 3381116..3382108 Photorhabdus asymbiotica 8166594 YP_003041756.1 CDS ybhF NC_012962.1 3382118 3383854 D abc transporter atp-binding protein ybhf 3382118..3383854 Photorhabdus asymbiotica 8166588 YP_003041757.1 CDS ybhS NC_012962.1 3383851 3385008 D abc transporter permease protein ybhs 3383851..3385008 Photorhabdus asymbiotica 8166587 YP_003041758.1 CDS ybhR NC_012962.1 3385021 3386127 D inner membrane transport permease ybhr 3385021..3386127 Photorhabdus asymbiotica 8166592 YP_003041759.1 CDS PAU_02928 NC_012962.1 3386472 3387626 R major facilitator superfamily mfs_1 precursor complement(3386472..3387626) Photorhabdus asymbiotica 8166591 YP_003041760.1 CDS kbl NC_012962.1 3387736 3389043 R hypothetical protein complement(3387736..3389043) Photorhabdus asymbiotica 8166445 YP_003041761.1 CDS ybhL NC_012962.1 3389614 3390324 R inner membrane protein ybhl complement(3389614..3390324) Photorhabdus asymbiotica 8165049 YP_003041762.1 CDS moaE NC_012962.1 3390505 3390960 R catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE complement(3390505..3390960) Photorhabdus asymbiotica 8166590 YP_003041763.1 CDS moaD NC_012962.1 3390964 3391209 R catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit complement(3390964..3391209) Photorhabdus asymbiotica 8166340 YP_003041764.1 CDS moaC NC_012962.1 3391209 3391685 R molybdenum cofactor biosynthesis protein c complement(3391209..3391685) Photorhabdus asymbiotica 8166339 YP_003041765.1 CDS moaA NC_012962.1 3391723 3392703 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(3391723..3392703) Photorhabdus asymbiotica 8166338 YP_003041766.1 CDS ybhK NC_012962.1 3393111 3394019 D similar to unknown protein ybhk of escherichia coli; hypothetical protein 3393111..3394019 Photorhabdus asymbiotica 8166337 YP_003041767.1 CDS uvrB NC_012962.1 3394020 3396041 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(3394020..3396041) Photorhabdus asymbiotica 8166589 YP_003041768.1 CDS bioD NC_012962.1 3396786 3397466 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(3396786..3397466) Photorhabdus asymbiotica 8168432 YP_003041769.1 CDS bioC NC_012962.1 3397459 3398226 R biotin biosynthesis; reaction prior to pimeloyl coa (putative enzym bioc) complement(3397459..3398226) Photorhabdus asymbiotica 8165565 YP_003041770.1 CDS bioF NC_012962.1 3398210 3399364 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(3398210..3399364) Photorhabdus asymbiotica 8165564 YP_003041771.1 CDS bioB NC_012962.1 3399361 3400398 R biotin synthetase (biotin synthase) complement(3399361..3400398) Photorhabdus asymbiotica 8165566 YP_003041772.1 CDS bioA NC_012962.1 3400494 3401765 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase 3400494..3401765 Photorhabdus asymbiotica 8165563 YP_003041773.1 CDS pgl NC_012962.1 3402002 3402991 R catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase complement(3402002..3402991) Photorhabdus asymbiotica 8165562 YP_003041774.1 CDS ybhA NC_012962.1 3403138 3403956 D YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily; phosphotransferase 3403138..3403956 Photorhabdus asymbiotica 8168712 YP_003041775.1 CDS modC NC_012962.1 3404077 3405141 R Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein complement(3404077..3405141) Photorhabdus asymbiotica 8166586 YP_003041776.1 CDS modB NC_012962.1 3405135 3405836 R part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease protein complement(3405135..3405836) Photorhabdus asymbiotica 8166346 YP_003041777.1 CDS modA NC_012962.1 3405848 3406618 R with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein complement(3405848..3406618) Photorhabdus asymbiotica 8166345 YP_003041778.1 CDS modE NC_012962.1 3407125 3407976 D represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE 3407125..3407976 Photorhabdus asymbiotica 8166344 YP_003041779.1 CDS modF NC_012962.1 3408068 3409543 D contains 2 ATP-binding cassettes; involved in the transport of molybdenum; putative molybdenum transport ATP-binding protein ModF 3408068..3409543 Photorhabdus asymbiotica 8166347 YP_003041780.1 CDS PAU_02949 NC_012962.1 3409718 3410545 D hypothetical protein 3409718..3410545 Photorhabdus asymbiotica 8166348 YP_003041781.1 CDS gpmA NC_012962.1 3410718 3411470 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 3410718..3411470 Photorhabdus asymbiotica 8166446 YP_003041782.1 CDS aroG NC_012962.1 3411551 3412618 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3411551..3412618) Photorhabdus asymbiotica 8169259 YP_003041783.1 CDS pnuC NC_012962.1 3412864 3413589 R pnuc nmn transporter complement(3412864..3413589) Photorhabdus asymbiotica 8165503 YP_003041784.1 CDS nadA NC_012962.1 3413779 3414810 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(3413779..3414810) Photorhabdus asymbiotica 8168288 YP_003041785.1 CDS ydaB NC_012962.1 3416045 3416923 R phage protein ydab complement(3416045..3416923) Photorhabdus asymbiotica 8166896 YP_003041786.1 CDS pirA NC_012962.1 3417453 3417770 R similar to pirA; hypothetical protein complement(3417453..3417770) Photorhabdus asymbiotica 8165415 YP_003041787.1 CDS ybgF NC_012962.1 3421249 3422016 R periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF complement(3421249..3422016) Photorhabdus asymbiotica 8166995 YP_003041788.1 CDS pal NC_012962.1 3422026 3422553 R peptidoglycan-associated outer membrane lipoprotein complement(3422026..3422553) Photorhabdus asymbiotica 8166585 YP_003041789.1 CDS tolB NC_012962.1 3422569 3423924 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(3422569..3423924) Photorhabdus asymbiotica 8165634 YP_003041790.1 CDS tolA NC_012962.1 3424242 3425312 R inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA complement(3424242..3425312) Photorhabdus asymbiotica 8167517 YP_003041791.1 CDS tolR NC_012962.1 3425357 3425782 R membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR complement(3425357..3425782) Photorhabdus asymbiotica 8167516 YP_003041792.1 CDS tolQ NC_012962.1 3425797 3426492 R membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ complement(3425797..3426492) Photorhabdus asymbiotica 8167520 YP_003041793.1 CDS PAU_02963 NC_012962.1 3426492 3426995 R catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase YbgC complement(3426492..3426995) Photorhabdus asymbiotica 8167519 YP_003041794.1 CDS PAU_02964 NC_012962.1 3427011 3427298 R hypothetical protein complement(3427011..3427298) Photorhabdus asymbiotica 8166448 YP_003041795.1 CDS PAU_02965 NC_012962.1 3427298 3427414 R hypothetical protein complement(3427298..3427414) Photorhabdus asymbiotica 8166449 YP_003041796.1 CDS cydB2 NC_012962.1 3427427 3428566 R cytochrome d ubiquinol oxidase subunit 2 complement(3427427..3428566) Photorhabdus asymbiotica 8166450 YP_003041797.1 CDS cydA2 NC_012962.1 3428581 3430149 R cytochrome d ubiquinol oxidase subunit 1 complement(3428581..3430149) Photorhabdus asymbiotica 8169121 YP_003041798.1 CDS PAU_02968 NC_012962.1 3431446 3432744 D hypothetical protein 3431446..3432744 Photorhabdus asymbiotica 8169119 YP_003041799.1 CDS PAU_02969 NC_012962.1 3433229 3435103 D hypothetical protein 3433229..3435103 Photorhabdus asymbiotica 8166451 YP_003041800.1 CDS PAU_02970 NC_012962.1 3435817 3437604 D hypothetical protein 3435817..3437604 Photorhabdus asymbiotica 8166452 YP_003041801.1 CDS sucD NC_012962.1 3437671 3438546 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(3437671..3438546) Photorhabdus asymbiotica 8166453 YP_003041802.1 CDS sucC NC_012962.1 3438546 3439712 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(3438546..3439712) Photorhabdus asymbiotica 8167690 YP_003041803.1 CDS sucB NC_012962.1 3439874 3441097 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(3439874..3441097) Photorhabdus asymbiotica 8167689 YP_003041804.1 CDS sucA NC_012962.1 3441112 3443919 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(3441112..3443919) Photorhabdus asymbiotica 8167688 YP_003041805.1 CDS sdhB NC_012962.1 3444184 3444900 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(3444184..3444900) Photorhabdus asymbiotica 8167687 YP_003041806.1 CDS sdhA NC_012962.1 3444938 3446704 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(3444938..3446704) Photorhabdus asymbiotica 8167622 YP_003041807.1 CDS sdhD NC_012962.1 3446705 3447052 R succinate dehydrogenase cytochrome b556 small membrane subunit complement(3446705..3447052) Photorhabdus asymbiotica 8167621 YP_003041808.1 CDS sdhC NC_012962.1 3447046 3447435 R succinate dehydrogenase cytochrome b-556 subunit complement(3447046..3447435) Photorhabdus asymbiotica 8167624 YP_003041809.1 CDS gltA NC_012962.1 3448305 3449588 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3448305..3449588 Photorhabdus asymbiotica 8167623 YP_003041810.1 CDS PAU_02980 NC_012962.1 3449941 3450684 R putative hydrolase-oxidase complement(3449941..3450684) Photorhabdus asymbiotica 8167768 YP_003041811.1 CDS PAU_02981 NC_012962.1 3450872 3451081 R hypothetical protein complement(3450872..3451081) Photorhabdus asymbiotica 8166454 YP_003041812.1 CDS PAU_02982 NC_012962.1 3452060 3452578 D hypothetical protein 3452060..3452578 Photorhabdus asymbiotica 8166455 YP_003041813.1 CDS PAU_02983 NC_012962.1 3452626 >3453000 R Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defense against fungal and insect pathogens by destroying their chitin-containing cell wall.; chitinase class i family protein complement(3452626..>3453000) Photorhabdus asymbiotica 8166456 YP_003041814.1 CDS PAU_02984 NC_012962.1 3452982 3454655 R hypothetical protein complement(3452982..3454655) Photorhabdus asymbiotica 8166457 YP_003041815.1 CDS PAU_02985 NC_012962.1 3454692 3455075 R hypothetical protein complement(3454692..3455075) Photorhabdus asymbiotica 8166458 YP_003041816.1 CDS kdpA NC_012962.1 3455669 3457375 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 3455669..3457375 Photorhabdus asymbiotica 8166459 YP_003041817.1 CDS kdpB NC_012962.1 3457396 3459462 D One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 3457396..3459462 Photorhabdus asymbiotica 8165052 YP_003041818.1 CDS kdpC NC_012962.1 3459474 3460055 D One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 3459474..3460055 Photorhabdus asymbiotica 8165053 YP_003041819.1 CDS kdpD NC_012962.1 3460065 3462764 D sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD 3460065..3462764 Photorhabdus asymbiotica 8165054 YP_003041820.1 CDS kdpE NC_012962.1 3462761 3463453 D response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE 3462761..3463453 Photorhabdus asymbiotica 8165055 YP_003041821.1 CDS PAU_02991 NC_012962.1 3463644 3465185 R hypothetical protein complement(3463644..3465185) Photorhabdus asymbiotica 8165056 YP_003041822.1 CDS PAU_02992 NC_012962.1 3465659 3466462 R hypothetical protein complement(3465659..3466462) Photorhabdus asymbiotica 8166460 YP_003041823.1 CDS PAU_02993 NC_012962.1 3466506 3466625 D hypothetical protein 3466506..3466625 Photorhabdus asymbiotica 8166461 YP_003041824.1 CDS pgm NC_012962.1 3466946 3468586 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(3466946..3468586) Photorhabdus asymbiotica 8166462 YP_003041825.1 CDS seqA NC_012962.1 3468646 3469170 R negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA complement(3468646..3469170) Photorhabdus asymbiotica 8168713 YP_003041826.1 CDS PAU_02996 NC_012962.1 3469512 3469985 R hypothetical protein complement(3469512..3469985) Photorhabdus asymbiotica 8167636 YP_003041827.1 CDS fhaB NC_012962.1 3469993 3470817 R hypothetical protein complement(3469993..3470817) Photorhabdus asymbiotica 8166463 YP_003041828.1 CDS PAU_02998 NC_012962.1 3470983 3471309 D complete genome; segment 4/17 3470983..3471309 Photorhabdus asymbiotica 8166535 YP_003041829.1 CDS PAU_02999 NC_012962.1 3471785 3473203 R putative integrase complement(3471785..3473203) Photorhabdus asymbiotica 8166464 YP_003041830.1 CDS gene0030 NC_012962.1 3473664 3476432 R dnag primase-like complement(3473664..3476432) Photorhabdus asymbiotica 8166465 YP_003041831.1 CDS gene0031 NC_012962.1 3476979 3477377 R hypothetical protein complement(3476979..3477377) Photorhabdus asymbiotica 8169355 YP_003041832.1 CDS gene0032 NC_012962.1 3477594 3478229 R hypothetical protein complement(3477594..3478229) Photorhabdus asymbiotica 8169356 YP_003041833.1 CDS gene0033 NC_012962.1 3478150 >3478554 R hypothetical protein complement(3478150..>3478554) Photorhabdus asymbiotica 8169357 YP_003041834.1 CDS gene0034 NC_012962.1 3478722 3479108 R hypothetical protein complement(3478722..3479108) Photorhabdus asymbiotica 8169358 YP_003041835.1 CDS xerC NC_012962.1 3479494 3480516 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(3479494..3480516) Photorhabdus asymbiotica 8169359 YP_003041836.1 CDS gene0036 NC_012962.1 3480735 3483518 R dnag primase-like protein complement(3480735..3483518) Photorhabdus asymbiotica 8169360 YP_003041837.1 CDS gene0037 NC_012962.1 3483999 3484385 R hypothetical protein complement(3483999..3484385) Photorhabdus asymbiotica 8169361 YP_003041838.1 CDS gene0038 NC_012962.1 3484598 3484945 R hypothetical protein complement(3484598..3484945) Photorhabdus asymbiotica 8169362 YP_003041839.1 CDS api89 NC_012962.1 3484950 3489221 R Contains RHS domain and YD repeats.These repeats appear in general to be involved in binding carbohydrate; putative membrane-bound sugar-binding protein complement(3484950..3489221) Photorhabdus asymbiotica 8169363 YP_003041840.1 CDS api90 NC_012962.1 3489231 3489656 R hypothetical protein api90 complement(3489231..3489656) Photorhabdus asymbiotica 8166790 YP_003041841.1 CDS PAU_03011 NC_012962.1 3490225 3491034 R similar to putative esterase/lipase; hypothetical protein complement(3490225..3491034) Photorhabdus asymbiotica 8166791 YP_003041842.1 CDS dctA NC_012962.1 3491508 3492761 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3491508..3492761 Photorhabdus asymbiotica 8166466 YP_003041843.1 CDS PAU_03013 NC_012962.1 3494093 3494542 D hypothetical protein 3494093..3494542 Photorhabdus asymbiotica 8167045 YP_003041844.1 CDS PAU_03014 NC_012962.1 3494572 3498411 D Photorhabdus luminescens subsp. laumondii complete genome; segment 11/17; hypothetical protein 3494572..3498411 Photorhabdus asymbiotica 8166467 YP_003041845.1 CDS PAU_03015 NC_012962.1 3498811 3499158 D glycine-proline rich protein; hypothetical protein 3498811..3499158 Photorhabdus asymbiotica 8166468 YP_003041846.1 CDS PAU_03016 NC_012962.1 3499152 3499379 D hypothetical protein 3499152..3499379 Photorhabdus asymbiotica 8166469 YP_003041847.1 CDS yjiW NC_012962.1 3499497 3499838 R hypothetical protein complement(3499497..3499838) Photorhabdus asymbiotica 8166470 YP_003041848.1 CDS PAU_03018 NC_012962.1 3499900 3510189 R Similar to RTX toxin RtxA complement(3499900..3510189) Photorhabdus asymbiotica 8164987 YP_003041849.1 CDS PAU_03019 NC_012962.1 3511090 3531492 R Similar to proteins involved in antibiotic biosynthesis complement(3511090..3531492) Photorhabdus asymbiotica 8166471 YP_003041850.1 CDS amiF NC_012962.1 3532974 3533990 R formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase complement(3532974..3533990) Photorhabdus asymbiotica 8166472 YP_003041851.1 CDS PAU_03021 NC_012962.1 3535271 >3535738 R A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein; Putative hemagglutinin/hemolysin pala complement(3535271..>3535738) Photorhabdus asymbiotica 8166778 YP_003041852.1 CDS PAU_03022 NC_012962.1 3535905 3536543 R hypothetical protein complement(3535905..3536543) Photorhabdus asymbiotica 8166473 YP_003041853.1 CDS PAU_03023 NC_012962.1 3536533 >3537444 R This highly divergent repeat occurs in number of proteins implicated in cell aggregation; hemagglutinin-like protein complement(3536533..>3537444) Photorhabdus asymbiotica 8166474 YP_003041854.1 CDS PAU_03024 NC_012962.1 3537449 3537784 R hypothetical protein complement(3537449..3537784) Photorhabdus asymbiotica 8166475 YP_003041855.1 CDS PAU_03025 NC_012962.1 3537788 3538474 R hemagglutinin-like secreted protein; hypothetical protein complement(3537788..3538474) Photorhabdus asymbiotica 8166476 YP_003041856.1 CDS PAU_03026 NC_012962.1 3538625 3546715 R This highly divergent repeat occurs in number of proteins implicated in cell aggregation; hemagglutinin/hemolysin-like protein complement(3538625..3546715) Photorhabdus asymbiotica 8166477 YP_003041857.1 CDS rtxA NC_012962.1 3548123 3558715 R The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria.; Similar to RTX toxin RtxA complement(3548123..3558715) Photorhabdus asymbiotica 8166478 YP_003041858.1 CDS PAU_03028 NC_012962.1 3559942 3560622 R hypothetical protein complement(3559942..3560622) Photorhabdus asymbiotica 8167158 YP_003041859.1 CDS orf3 NC_012962.1 3561835 3563013 R hypothetical protein complement(3561835..3563013) Photorhabdus asymbiotica 8166479 YP_003041860.1 CDS PAU_03030 NC_012962.1 3563000 3564454 R similar to na+/h+ antiporter; hypothetical protein complement(3563000..3564454) Photorhabdus asymbiotica 8165596 YP_003041861.1 CDS PAU_03031 NC_012962.1 3564612 3565613 R similar to galr/laci family transcriptional regulator; hypothetical protein complement(3564612..3565613) Photorhabdus asymbiotica 8166480 YP_003041862.1 CDS PAU_03032 NC_012962.1 3565842 3566513 R similarities with luxr family transcriptional regulator; LuxR family transcriptional regulator complement(3565842..3566513) Photorhabdus asymbiotica 8168996 YP_003041863.1 CDS afp17 NC_012962.1 3568046 3570844 D afp17 3568046..3570844 Photorhabdus asymbiotica 8166067 YP_003041864.1 CDS PAU_03034 NC_012962.1 3572008 3572697 D similar to transcription regulator luxr family; LuxR family transcription regulator 3572008..3572697 Photorhabdus asymbiotica 8166752 YP_003041865.1 CDS PAU_03035 NC_012962.1 3572737 3573423 D similar to probable transcription regulator; hypothetical protein 3572737..3573423 Photorhabdus asymbiotica 8166068 YP_003041866.1 CDS PAU_03036 NC_012962.1 3573449 3574117 D similar to probable transcription regulator; hypothetical protein 3573449..3574117 Photorhabdus asymbiotica 8166069 YP_003041867.1 CDS PAU_03037 NC_012962.1 3574221 3574391 R hypothetical protein complement(3574221..3574391) Photorhabdus asymbiotica 8166070 YP_003041868.1 CDS PAU_03038 NC_012962.1 3574541 3575038 R hypothetical protein complement(3574541..3575038) Photorhabdus asymbiotica 8166071 YP_003041869.1 CDS PAU_03039 NC_012962.1 3575095 3576147 R hypothetical protein complement(3575095..3576147) Photorhabdus asymbiotica 8166072 YP_003041870.1 CDS PAU_03040 NC_012962.1 3576147 3578030 R hypothetical protein complement(3576147..3578030) Photorhabdus asymbiotica 8166073 YP_003041871.1 CDS PAU_03041 NC_012962.1 3578063 3581410 R hypothetical protein complement(3578063..3581410) Photorhabdus asymbiotica 8166074 YP_003041872.1 CDS PAU_03042 NC_012962.1 3581427 3582578 R hypothetical protein complement(3581427..3582578) Photorhabdus asymbiotica 8166075 YP_003041873.1 CDS PAU_03043 NC_012962.1 3582575 3582832 R hypothetical protein complement(3582575..3582832) Photorhabdus asymbiotica 8166076 YP_003041874.1 CDS PAU_03044 NC_012962.1 3582829 3585306 R hypothetical protein complement(3582829..3585306) Photorhabdus asymbiotica 8166077 YP_003041875.1 CDS PAU_03045 NC_012962.1 3585294 3585809 R membrane protein complement(3585294..3585809) Photorhabdus asymbiotica 8166078 YP_003041876.1 CDS PAU_03046 NC_012962.1 3585860 3586375 R hypothetical protein complement(3585860..3586375) Photorhabdus asymbiotica 8166079 YP_003041877.1 CDS PAU_03047 NC_012962.1 3586356 3587168 R hypothetical protein complement(3586356..3587168) Photorhabdus asymbiotica 8166080 YP_003041878.1 CDS vgrG4 NC_012962.1 3587172 3589571 R hypothetical protein complement(3587172..3589571) Photorhabdus asymbiotica 8166081 YP_003041879.1 CDS PAU_03049 NC_012962.1 3589568 3589711 R clpb protein complement(3589568..3589711) Photorhabdus asymbiotica 8168446 YP_003041880.1 CDS PAU_03050 NC_012962.1 3589955 3590446 R hypothetical protein complement(3589955..3590446) Photorhabdus asymbiotica 8166082 YP_003041881.1 CDS PAU_03051 NC_012962.1 3590451 3590654 R hypothetical protein complement(3590451..3590654) Photorhabdus asymbiotica 8166083 YP_003041882.1 CDS PAU_03052 NC_012962.1 3590712 3593189 R hypothetical protein complement(3590712..3593189) Photorhabdus asymbiotica 8166084 YP_003041883.1 CDS PAU_03053 NC_012962.1 3593177 3593692 R membrane protein complement(3593177..3593692) Photorhabdus asymbiotica 8166085 YP_003041884.1 CDS PAU_03054 NC_012962.1 3593743 3594258 R membrane protein complement(3593743..3594258) Photorhabdus asymbiotica 8166086 YP_003041885.1 CDS PAU_03055 NC_012962.1 3594309 3594890 R membrane protein complement(3594309..3594890) Photorhabdus asymbiotica 8166087 YP_003041886.1 CDS PAU_03056 NC_012962.1 3595021 3595512 R hypothetical protein complement(3595021..3595512) Photorhabdus asymbiotica 8166088 YP_003041887.1 CDS PAU_03057 NC_012962.1 3595517 3597268 R hypothetical protein complement(3595517..3597268) Photorhabdus asymbiotica 8166089 YP_003041888.1 CDS PAU_03058 NC_012962.1 3597265 3597930 R membrane protein complement(3597265..3597930) Photorhabdus asymbiotica 8166090 YP_003041889.1 CDS PAU_03059 NC_012962.1 3597927 3599276 R hypothetical protein complement(3597927..3599276) Photorhabdus asymbiotica 8166091 YP_003041890.1 CDS PAU_03060 NC_012962.1 3599289 3600821 R hypothetical protein complement(3599289..3600821) Photorhabdus asymbiotica 8166092 YP_003041891.1 CDS PAU_03061 NC_012962.1 3600881 3601540 R hypothetical protein complement(3600881..3601540) Photorhabdus asymbiotica 8166093 YP_003041892.1 CDS PAU_03062 NC_012962.1 3602475 3602834 R hypothetical protein complement(3602475..3602834) Photorhabdus asymbiotica 8166094 YP_003041893.1 CDS ofn31 NC_012962.1 3603128 3603529 R hypothetical protein complement(3603128..3603529) Photorhabdus asymbiotica 8166095 YP_003041894.1 CDS ofn32 NC_012962.1 3603526 3603792 R hypothetical protein complement(3603526..3603792) Photorhabdus asymbiotica 8166960 YP_003041895.1 CDS PAU_03065 NC_012962.1 3604175 3604462 R hypothetical protein complement(3604175..3604462) Photorhabdus asymbiotica 8166961 YP_003041896.1 CDS PAU_03066 NC_012962.1 3604459 3604710 R hypothetical protein complement(3604459..3604710) Photorhabdus asymbiotica 8166096 YP_003041897.1 CDS PAU_03067 NC_012962.1 3604973 3620476 R possible Syringopeptin synthetase (phytotoxin); syringopeptin synthetase C complement(3604973..3620476) Photorhabdus asymbiotica 8166097 YP_003041898.1 CDS PAU_03068 NC_012962.1 3621856 3622413 D hypothetical protein 3621856..3622413 Photorhabdus asymbiotica 8166098 YP_003041899.1 CDS PAU_03069 NC_012962.1 3622450 3623502 D hypothetical protein 3622450..3623502 Photorhabdus asymbiotica 8166099 YP_003041900.1 CDS PAU_03070 NC_012962.1 3623514 3624032 D hypothetical protein 3623514..3624032 Photorhabdus asymbiotica 8166100 YP_003041901.1 CDS doc NC_012962.1 3624941 3625330 R Part of a two protein operon with prevents-host-death (phd) that forms an addiction module. DOC lacks homology to analogous addiction module post-segregational killing proteins involved in plasmid maintenance. These modules work as a combination of a long lived poison (e.g. this protein) and a more abundant but shorter lived antidote.; death-on-curing protein complement(3624941..3625330) Photorhabdus asymbiotica 8166101 YP_003041902.1 CDS yhhV NC_012962.1 3625327 3625548 R similar to E.coli prevent host death protein.Part of a two protein operon with prevents-host-death (phd) that forms an addiction module. DOC lacks homology to analogous addiction module post-segregational killing proteins involved in plasmid maintenance. These modules work as a combination of a long lived poison and a more abundant but shorter lived antidote (e.g. this protein); hypothetical protein complement(3625327..3625548) Photorhabdus asymbiotica 8168640 YP_003041903.1 CDS PAU_03073 NC_012962.1 3625810 3638014 R The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria.; rtx toxin RtxA complement(join(3625810..3631134,3631133..3638014)) Photorhabdus asymbiotica 8167608 YP_003041904.1 CDS ISPlu8C4 NC_012962.1 3638419 3639471 R transposase, IS630 family complement(3638419..3639471) Photorhabdus asymbiotica 8166102 YP_003041905.1 CDS rtxC NC_012962.1 3640328 3640789 R cytolysin-activating lysine-acyltransferase rtxc complement(3640328..3640789) Photorhabdus asymbiotica 8165043 YP_003041906.1 CDS PAU_03076 NC_012962.1 3640811 3641167 R hypothetical protein complement(3640811..3641167) Photorhabdus asymbiotica 8167160 YP_003041907.1 CDS rtxB NC_012962.1 3641501 3643606 D RTX toxin ABC transporter protein 3641501..3643606 Photorhabdus asymbiotica 8166103 YP_003041908.1 CDS rtxD NC_012962.1 3643599 3644954 D RTX toxin ABC transporter protein 3643599..3644954 Photorhabdus asymbiotica 8167159 YP_003041909.1 CDS PAU_03079 NC_012962.1 3644966 3647107 D toxin secretion abc transporter protein, hlyb family; similar to unknown protein vc1446 of vibrio cholerae; Putative toxin transporter 3644966..3647107 Photorhabdus asymbiotica 8167161 YP_003041910.1 CDS PAU_03080 NC_012962.1 3647299 3648267 D AraC family transcriptional regulator 3647299..3648267 Photorhabdus asymbiotica 8166104 YP_003041911.1 CDS PAU_03081 NC_012962.1 3648407 3648697 D LexA regulated protein 3648407..3648697 Photorhabdus asymbiotica 8166105 YP_003041912.1 CDS fldA NC_012962.1 3648869 3649399 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 3648869..3649399 Photorhabdus asymbiotica 8166106 YP_003041913.1 CDS fur NC_012962.1 3649928 3650374 D negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 3649928..3650374 Photorhabdus asymbiotica 8166545 YP_003041914.1 CDS chb NC_012962.1 3650445 3653120 R Chitobiases degrade chitin; chitobiase (n-acetyl-beta-glucosaminidase)-beta-n acetylhexosaminidase complement(3650445..3653120) Photorhabdus asymbiotica 8168179 YP_003041915.1 CDS glnS NC_012962.1 3653946 3655613 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(3653946..3655613) Photorhabdus asymbiotica 8168556 YP_003041916.1 CDS PAU_03086 NC_012962.1 3656355 3657179 R hypothetical protein complement(3656355..3657179) Photorhabdus asymbiotica 8167757 YP_003041917.1 CDS PAU_03087 NC_012962.1 3657244 3658752 R hypothetical protein complement(3657244..3658752) Photorhabdus asymbiotica 8166107 YP_003041918.1 CDS nagE NC_012962.1 3659410 3661422 R pts system, n-acetylglucosamine-specific iiabc component complement(3659410..3661422) Photorhabdus asymbiotica 8166108 YP_003041919.1 CDS nagB NC_012962.1 3661759 3662571 D catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 3661759..3662571 Photorhabdus asymbiotica 8166905 YP_003041920.1 CDS nagA NC_012962.1 3662672 3663832 D catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 3662672..3663832 Photorhabdus asymbiotica 8166903 YP_003041921.1 CDS nagC NC_012962.1 3663848 3665074 D transcriptional regulator; n-acetylglucosamine repressor 3663848..3665074 Photorhabdus asymbiotica 8166902 YP_003041922.1 CDS PAU_03092 NC_012962.1 3666002 3666628 R Similar to bacteriophage tail fiber protein complement(3666002..3666628) Photorhabdus asymbiotica 8167001 YP_003041923.1 CDS gene0039 NC_012962.1 3666628 3667986 R phage tail fiber protein complement(3666628..3667986) Photorhabdus asymbiotica 8166109 YP_003041924.1 CDS gene0040 NC_012962.1 3667973 3668629 R putative bacteriophage protein complement(3667973..3668629) Photorhabdus asymbiotica 8169364 YP_003041925.1 CDS gene0041 NC_012962.1 3668622 3669746 R hypothetical protein complement(3668622..3669746) Photorhabdus asymbiotica 8169365 YP_003041926.1 CDS gene0042 NC_012962.1 3669730 3670092 R putative bacteriophage protein complement(3669730..3670092) Photorhabdus asymbiotica 8169366 YP_003041927.1 CDS gene0043 NC_012962.1 3670089 3670760 R putative bacteriophage protein complement(3670089..3670760) Photorhabdus asymbiotica 8169367 YP_003041928.1 CDS gene0044 NC_012962.1 3670735 >3671553 R hypothetical protein complement(3670735..>3671553) Photorhabdus asymbiotica 8169368 YP_003041929.1 CDS gene0045 NC_012962.1 3671555 3671893 R hypothetical protein complement(3671555..3671893) Photorhabdus asymbiotica 8169369 YP_003041930.1 CDS gene0046 NC_012962.1 3671893 3672651 R hypothetical protein complement(3671893..3672651) Photorhabdus asymbiotica 8169370 YP_003041931.1 CDS gene0047 NC_012962.1 3673152 3673946 R hypothetical protein complement(3673152..3673946) Photorhabdus asymbiotica 8169371 YP_003041932.1 CDS gene0048 NC_012962.1 3674151 3674606 R hypothetical protein complement(3674151..3674606) Photorhabdus asymbiotica 8169372 YP_003041933.1 CDS gene0049 NC_012962.1 3675261 3675569 D hypothetical protein 3675261..3675569 Photorhabdus asymbiotica 8169373 YP_003041934.1 CDS gene0050 NC_012962.1 3675597 3676175 D hypothetical protein 3675597..3676175 Photorhabdus asymbiotica 8169374 YP_003041935.1 CDS gene0051 NC_012962.1 3676551 3678491 R bacteriophage protein complement(3676551..3678491) Photorhabdus asymbiotica 8169375 YP_003041936.1 CDS gene0052 NC_012962.1 3678603 3678998 R hypothetical protein complement(3678603..3678998) Photorhabdus asymbiotica 8169376 YP_003041937.1 CDS gene0053 NC_012962.1 3678995 3679432 R hypothetical protein complement(3678995..3679432) Photorhabdus asymbiotica 8169377 YP_003041938.1 CDS gene0054 NC_012962.1 3679451 3680962 R similar to unknown bacteriophage protein; hypothetical protein complement(3679451..3680962) Photorhabdus asymbiotica 8169378 YP_003041939.1 CDS gene0055 NC_012962.1 3680966 3681340 R hypothetical protein complement(3680966..3681340) Photorhabdus asymbiotica 8169379 YP_003041940.1 CDS gene0056 NC_012962.1 3681384 >3681704 R hypothetical protein complement(3681384..>3681704) Photorhabdus asymbiotica 8169380 YP_003041941.1 CDS gene0057 NC_012962.1 3681709 3682179 R hypothetical protein complement(3681709..3682179) Photorhabdus asymbiotica 8169381 YP_003041942.1 CDS gene0058 NC_012962.1 3682176 3682538 R hypothetical protein complement(3682176..3682538) Photorhabdus asymbiotica 8169382 YP_003041943.1 CDS gene0059 NC_012962.1 3682553 3683512 R hypothetical protein complement(3682553..3683512) Photorhabdus asymbiotica 8169383 YP_003041944.1 CDS gene0060 NC_012962.1 3683515 3684000 R hypothetical protein complement(3683515..3684000) Photorhabdus asymbiotica 8169384 YP_003041945.1 CDS gene0061 NC_012962.1 3684003 3685205 R hypothetical protein complement(3684003..3685205) Photorhabdus asymbiotica 8169385 YP_003041946.1 CDS gene0062 NC_012962.1 3685166 3686029 R Phage putative head morphogenesis protein complement(3685166..3686029) Photorhabdus asymbiotica 8169386 YP_003041947.1 CDS gene0063 NC_012962.1 3685938 3687293 R Phage-related protein HI1409 complement(3685938..3687293) Photorhabdus asymbiotica 8169387 YP_003041948.1 CDS gene0064 NC_012962.1 3687301 3688518 R Phage terminase, large subunit complement(3687301..3688518) Photorhabdus asymbiotica 8169388 YP_003041949.1 CDS gene0065 NC_012962.1 3688533 3688934 R bacteriophage protein complement(3688533..3688934) Photorhabdus asymbiotica 8169389 YP_003041950.1 CDS gene0066 NC_012962.1 3689294 3689878 R hypothetical protein complement(3689294..3689878) Photorhabdus asymbiotica 8169390 YP_003041951.1 CDS gene0067 NC_012962.1 3690042 3690491 R cryptic prophage endopeptidase b1362 complement(3690042..3690491) Photorhabdus asymbiotica 8169391 YP_003041952.1 CDS gene0068 NC_012962.1 3690488 3690913 R putative phage lysozyme complement(3690488..3690913) Photorhabdus asymbiotica 8169392 YP_003041953.1 CDS gene0069 NC_012962.1 3690900 >3691355 R Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall.; phage holin-like protein complement(3690900..>3691355) Photorhabdus asymbiotica 8169393 YP_003041954.1 CDS gene0070 NC_012962.1 3691932 3692456 R Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream; phage antiterminator q protein complement(3691932..3692456) Photorhabdus asymbiotica 8169394 YP_003041955.1 CDS gene0071 NC_012962.1 3692606 3693259 R NinG is involved in recombination; Bacteriophage Lambda NinG complement(3692606..3693259) Photorhabdus asymbiotica 8169395 YP_003041956.1 CDS gene0072 NC_012962.1 3693537 3693983 R hypothetical protein complement(3693537..3693983) Photorhabdus asymbiotica 8169396 YP_003041957.1 CDS gene0073 NC_012962.1 3693998 3694321 R hypothetical protein complement(3693998..3694321) Photorhabdus asymbiotica 8169397 YP_003041958.1 CDS gene0074 NC_012962.1 3694323 3695042 R phage replication protein p complement(3694323..3695042) Photorhabdus asymbiotica 8169398 YP_003041959.1 CDS gene0075 NC_012962.1 3695018 3695830 R phage replication protein o complement(3695018..3695830) Photorhabdus asymbiotica 8169399 YP_003041960.1 CDS cII NC_012962.1 3695936 3696277 R transcription activator protein c1 complement(3695936..3696277) Photorhabdus asymbiotica 8169400 YP_003041961.1 CDS cro NC_012962.1 3696415 3696624 R cro protein (putative regulatory protein)from phage complement(3696415..3696624) Photorhabdus asymbiotica 8168571 YP_003041962.1 CDS PAU_03132 NC_012962.1 3696730 3697137 D putative regulatory protein DicA 3696730..3697137 Photorhabdus asymbiotica 8169094 YP_003041963.1 CDS PAU_03133 NC_012962.1 3697303 3697770 D hypothetical protein 3697303..3697770 Photorhabdus asymbiotica 8166110 YP_003041964.1 CDS PAU_03134 NC_012962.1 3697777 3698157 D hypothetical protein 3697777..3698157 Photorhabdus asymbiotica 8166111 YP_003041965.1 CDS PAU_03135 NC_012962.1 3698571 3698816 D hypothetical protein 3698571..3698816 Photorhabdus asymbiotica 8166112 YP_003041966.1 CDS gene0076 NC_012962.1 3699853 3700539 D hypothetical protein 3699853..3700539 Photorhabdus asymbiotica 8166113 YP_003041967.1 CDS gene0077 NC_012962.1 3700678 3701226 D hypothetical protein 3700678..3701226 Photorhabdus asymbiotica 8169401 YP_003041968.1 CDS gene0078 NC_012962.1 3701199 3701843 D hypothetical protein 3701199..3701843 Photorhabdus asymbiotica 8169402 YP_003041969.1 CDS gene0079 NC_012962.1 3702292 3702750 D hypothetical protein 3702292..3702750 Photorhabdus asymbiotica 8169403 YP_003041970.1 CDS PAU_03140 NC_012962.1 3702743 3703093 D hypothetical protein 3702743..3703093 Photorhabdus asymbiotica 8169404 YP_003041971.1 CDS PAU_03141 NC_012962.1 3703301 3703843 D DNA N-6-adenine-methyltransferase (putative dna methylase) 3703301..3703843 Photorhabdus asymbiotica 8166114 YP_003041972.1 CDS PAU_03142 NC_012962.1 3703883 3704110 D hypothetical protein 3703883..3704110 Photorhabdus asymbiotica 8166115 YP_003041973.1 CDS PAU_03143 NC_012962.1 3704318 3705355 D Putative phage integrase 3704318..3705355 Photorhabdus asymbiotica 8166116 YP_003041974.1 CDS ubiF NC_012962.1 3705725 3706906 R catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(3705725..3706906) Photorhabdus asymbiotica 8166117 YP_003041975.1 CDS miaB NC_012962.1 3707105 3708535 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3707105..3708535 Photorhabdus asymbiotica 8168397 YP_003041976.1 CDS PAU_03146 NC_012962.1 3708551 3709600 D hypothetical protein 3708551..3709600 Photorhabdus asymbiotica 8166327 YP_003041977.1 CDS PAU_03147 NC_012962.1 3709597 3710064 D putative metalloprotease 3709597..3710064 Photorhabdus asymbiotica 8166118 YP_003041978.1 CDS corC NC_012962.1 3710137 3711018 D magnesium and cobalt efflux protein corc 3710137..3711018 Photorhabdus asymbiotica 8166119 YP_003041979.1 CDS lnt NC_012962.1 3711026 3712555 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3711026..3712555 Photorhabdus asymbiotica 8169084 YP_003041980.1 CDS PAU_03150 NC_012962.1 3712674 3713135 D hypothetical protein 3712674..3713135 Photorhabdus asymbiotica 8165090 YP_003041981.1 CDS 92M18.3 NC_012962.1 3713278 3713400 D hypothetical protein 3713278..3713400 Photorhabdus asymbiotica 8166120 YP_003041982.1 CDS gltI NC_012962.1 3713528 3714469 D glutamate and aspartate transporter subunit 3713528..3714469 Photorhabdus asymbiotica 8165258 YP_003041983.1 CDS gltJ NC_012962.1 3714603 3715343 D glutamate/aspartate transport system permease protein gltj 3714603..3715343 Photorhabdus asymbiotica 8167771 YP_003041984.1 CDS gltK NC_012962.1 3715344 3716018 D glutamate/aspartate transport system permease protein gltk 3715344..3716018 Photorhabdus asymbiotica 8167773 YP_003041985.1 CDS gltL NC_012962.1 3716018 3716743 D glutamate/aspartate transport atp-binding protein gltl 3716018..3716743 Photorhabdus asymbiotica 8167774 YP_003041986.1 CDS leuS NC_012962.1 3716907 3719489 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3716907..3719489 Photorhabdus asymbiotica 8167775 YP_003041987.1 CDS rlpB NC_012962.1 3719503 3720051 D rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB 3719503..3720051 Photorhabdus asymbiotica 8165078 YP_003041988.1 CDS holA NC_012962.1 3720048 3721088 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 3720048..3721088 Photorhabdus asymbiotica 8164863 YP_003041989.1 CDS nadD NC_012962.1 3721072 3721749 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 3721072..3721749 Photorhabdus asymbiotica 8167304 YP_003041990.1 CDS PAU_03160 NC_012962.1 3721847 3722173 D hypothetical protein 3721847..3722173 Photorhabdus asymbiotica 8166899 YP_003041991.1 CDS PAU_03161 NC_012962.1 3722176 3722646 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3722176..3722646 Photorhabdus asymbiotica 8166121 YP_003041992.1 CDS pbpA NC_012962.1 3722686 3724581 D The large number of penicillin binding proteins, which are represented in this group of sequences, are responsible for the final stages of peptidoglycan biosynthesis for cell wall formation.; penicillin-binding protein 2 3722686..3724581 Photorhabdus asymbiotica 8166122 YP_003041993.1 CDS rodA NC_012962.1 3724590 3725702 D cell wall shape-determining protein 3724590..3725702 Photorhabdus asymbiotica 8165644 YP_003041994.1 CDS rlpA NC_012962.1 3725716 3726726 D rare lipoprotein A 3725716..3726726 Photorhabdus asymbiotica 8164889 YP_003041995.1 CDS dacA NC_012962.1 3726814 3728100 D penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase fraction A 3726814..3728100 Photorhabdus asymbiotica 8164862 YP_003041996.1 CDS PAU_03166 NC_012962.1 3728248 3728511 D hypothetical protein 3728248..3728511 Photorhabdus asymbiotica 8169149 YP_003041997.1 CDS lipB NC_012962.1 3728644 3729285 D lipoyltransferase 3728644..3729285 Photorhabdus asymbiotica 8166123 YP_003041998.1 CDS lipA NC_012962.1 3729395 3730360 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3729395..3730360 Photorhabdus asymbiotica 8165084 YP_003041999.1 CDS crcB NC_012962.1 3730375 3730749 D inner membrane protein crcb homolog 3730375..3730749 Photorhabdus asymbiotica 8165083 YP_003042000.1 CDS cspE NC_012962.1 3730823 3731062 R member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE complement(3730823..3731062) Photorhabdus asymbiotica 8169092 YP_003042001.1 CDS ogt NC_012962.1 3731250 3731741 R methylated-dna--protein-cysteine s-methyltransferase complement(3731250..3731741) Photorhabdus asymbiotica 8169105 YP_003042002.1 CDS PAU_03172 NC_012962.1 3732043 3732273 D hypothetical protein 3732043..3732273 Photorhabdus asymbiotica 8168111 YP_003042003.1 CDS nrdI NC_012962.1 3732281 3732709 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 3732281..3732709 Photorhabdus asymbiotica 8166124 YP_003042004.1 CDS nrdE NC_012962.1 3732706 3734835 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3732706..3734835 Photorhabdus asymbiotica 8166937 YP_003042005.1 CDS nrdF NC_012962.1 3734857 3735816 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 3734857..3735816 Photorhabdus asymbiotica 8166934 YP_003042006.1 CDS PAU_03176 NC_012962.1 3736119 3736223 D hypothetical protein 3736119..3736223 Photorhabdus asymbiotica 8166935 YP_003042007.1 CDS proV NC_012962.1 3736411 3737610 D Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection.; glycine betaine/l-proline transport atp-binding protein prov 3736411..3737610 Photorhabdus asymbiotica 8166125 YP_003042008.1 CDS proW NC_012962.1 3737603 3738688 D with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 3737603..3738688 Photorhabdus asymbiotica 8168319 YP_003042009.1 CDS proX NC_012962.1 3738730 3739731 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 3738730..3739731 Photorhabdus asymbiotica 8168320 YP_003042010.1 CDS ygaY NC_012962.1 3739979 3741187 D putative transport protein 3739979..3741187 Photorhabdus asymbiotica 8168321 YP_003042011.1 CDS PAU_03181 NC_012962.1 3741284 3742042 D hypothetical protein 3741284..3742042 Photorhabdus asymbiotica 8167552 YP_003042012.1 CDS PAU_03182 NC_012962.1 3742039 3742377 D hypothetical protein 3742039..3742377 Photorhabdus asymbiotica 8166126 YP_003042013.1 CDS mprA NC_012962.1 3742507 3743031 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 3742507..3743031 Photorhabdus asymbiotica 8166127 YP_003042014.1 CDS emrA NC_012962.1 3743270 3744448 D emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds.; multidrug resistance secretion protein 3743270..3744448 Photorhabdus asymbiotica 8166358 YP_003042015.1 CDS emrB NC_012962.1 3744463 3746004 D emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds.; multidrug resistance protein b 3744463..3746004 Photorhabdus asymbiotica 8168670 YP_003042016.1 CDS yfiF NC_012962.1 3746050 3747066 R putative methyltransferase complement(3746050..3747066) Photorhabdus asymbiotica 8168671 YP_003042017.1 CDS PAU_03187 NC_012962.1 3747205 3747879 D hypothetical protein 3747205..3747879 Photorhabdus asymbiotica 8167545 YP_003042018.1 CDS PAU_03188 NC_012962.1 3747947 3750589 D hypothetical protein 3747947..3750589 Photorhabdus asymbiotica 8166128 YP_003042019.1 CDS pssA NC_012962.1 3750750 3752108 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 3750750..3752108 Photorhabdus asymbiotica 8166129 YP_003042020.1 CDS clpB NC_012962.1 3758894 3761467 R The proteins are thought to protect cells from stress by controlling the aggregation and denaturation of vital cellular structures.; protein disaggregation chaperone complement(3758894..3761467) Photorhabdus asymbiotica 8165249 YP_003042021.1 CDS PAU_03191 NC_012962.1 3761602 3762333 R hypothetical protein complement(3761602..3762333) Photorhabdus asymbiotica 8168581 YP_003042022.1 CDS rluD NC_012962.1 3762334 3763311 R responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D complement(3762334..3763311) Photorhabdus asymbiotica 8166130 YP_003042023.1 CDS yfiO NC_012962.1 3763449 3764180 D with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 3763449..3764180 Photorhabdus asymbiotica 8164868 YP_003042024.1 CDS PAU_03194 NC_012962.1 3764415 3764804 D hypothetical protein 3764415..3764804 Photorhabdus asymbiotica 8167546 YP_003042025.1 CDS pheA NC_012962.1 3765090 3766247 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 3765090..3766247 Photorhabdus asymbiotica 8166131 YP_003042026.1 CDS hns NC_012962.1 3766715 3767161 D dna-binding protein h-ns (histone-like protein hlp-ii) (protein h1 (protein b1) 3766715..3767161 Photorhabdus asymbiotica 8168723 YP_003042027.1 CDS PAU_03197 NC_012962.1 3767749 3767889 D hypothetical protein 3767749..3767889 Photorhabdus asymbiotica 8167299 YP_003042028.1 CDS tyrA NC_012962.1 3769179 3770300 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(3769179..3770300) Photorhabdus asymbiotica 8166132 YP_003042029.1 CDS aroF NC_012962.1 3770306 3771400 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3770306..3771400) Photorhabdus asymbiotica 8168386 YP_003042030.1 CDS pcaD NC_012962.1 3772253 3773059 R beta-ketoadipate enol-lactone hydrolase complement(3772253..3773059) Photorhabdus asymbiotica 8165502 YP_003042031.1 CDS rplS NC_012962.1 3773542 3773895 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(3773542..3773895) Photorhabdus asymbiotica 8165646 YP_003042032.1 CDS trmD NC_012962.1 3773960 3774712 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(3773960..3774712) Photorhabdus asymbiotica 8164912 YP_003042033.1 CDS rimM NC_012962.1 3774752 3775309 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(3774752..3775309) Photorhabdus asymbiotica 8167534 YP_003042034.1 CDS rpsP NC_012962.1 3775319 3775567 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(3775319..3775567) Photorhabdus asymbiotica 8164860 YP_003042035.1 CDS ffh NC_012962.1 3775704 3777065 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(3775704..3777065) Photorhabdus asymbiotica 8167141 YP_003042036.1 CDS ypjD NC_012962.1 3777251 3778042 D inner membrane protein ypjd 3777251..3778042 Photorhabdus asymbiotica 8166533 YP_003042037.1 CDS yfjD NC_012962.1 3778083 3779375 D hypothetical protein 3778083..3779375 Photorhabdus asymbiotica 8169324 YP_003042038.1 CDS luxS NC_012962.1 3779539 3780054 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(3779539..3780054) Photorhabdus asymbiotica 8167547 YP_003042039.1 CDS gshA NC_012962.1 3780205 3781764 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(3780205..3781764) Photorhabdus asymbiotica 8168940 YP_003042040.1 CDS PAU_03210 NC_012962.1 3783258 3783443 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(3783258..3783443) Photorhabdus asymbiotica 8167011 YP_003042041.1 CDS alaS NC_012962.1 3783700 3786330 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(3783700..3786330) Photorhabdus asymbiotica 8166133 YP_003042042.1 CDS recA NC_012962.1 3786968 3788041 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(3786968..3788041) Photorhabdus asymbiotica 8166134 YP_003042043.1 CDS PAU_03213 NC_012962.1 3788145 3788648 R competence damage-inducible protein A complement(3788145..3788648) Photorhabdus asymbiotica 8166135 YP_003042044.1 CDS PAU_03214 NC_012962.1 3788659 3789873 R lysophospholipid transporter LplT complement(3788659..3789873) Photorhabdus asymbiotica 8166136 YP_003042045.1 CDS PAU_03215 NC_012962.1 3789879 3791750 R AAS bifunctional protein complement(3789879..3791750) Photorhabdus asymbiotica 8166137 YP_003042046.1 CDS aroL NC_012962.1 3791850 3792374 R type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase II complement(3791850..3792374) Photorhabdus asymbiotica 8166138 YP_003042047.1 CDS proA NC_012962.1 3792551 3793804 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(3792551..3793804) Photorhabdus asymbiotica 8166139 YP_003042048.1 CDS PAU_03218 NC_012962.1 3793814 3794989 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(3793814..3794989) Photorhabdus asymbiotica 8166140 YP_003042049.1 CDS frsA NC_012962.1 3795165 3796421 R forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein complement(3795165..3796421) Photorhabdus asymbiotica 8166141 YP_003042050.1 CDS PAU_03220 NC_012962.1 3796430 3796909 R catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase complement(3796430..3796909) Photorhabdus asymbiotica 8166142 YP_003042051.1 CDS PAU_03221 NC_012962.1 3797121 3798608 D Aminoacyl-histidine dipeptidase 3797121..3798608 Photorhabdus asymbiotica 8166143 YP_003042052.1 CDS PAU_03222 NC_012962.1 3798661 3799734 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(3798661..3799734) Photorhabdus asymbiotica 8166144 YP_003042053.1 CDS PAU_03223 NC_012962.1 3799957 3802269 D Hemin receptor protein HemR 3799957..3802269 Photorhabdus asymbiotica 8166145 YP_003042054.1 CDS PAU_03224 NC_012962.1 3802366 3802908 D Similar to sigma-70 factor 3802366..3802908 Photorhabdus asymbiotica 8166146 YP_003042055.1 CDS PAU_03225 NC_012962.1 3802993 3803880 D hypothetical protein 3802993..3803880 Photorhabdus asymbiotica 8166147 YP_003042056.1 CDS PAU_03226 NC_012962.1 3805000 3806889 D Pdl protein 3805000..3806889 Photorhabdus asymbiotica 8169001 YP_003042057.1 CDS PAU_03227 NC_012962.1 3806886 3807626 D hypothetical protein 3806886..3807626 Photorhabdus asymbiotica 8167047 YP_003042058.1 CDS PAU_03228 NC_012962.1 3807682 3808455 D hypothetical protein 3807682..3808455 Photorhabdus asymbiotica 8167048 YP_003042059.1 CDS PAU_03229 NC_012962.1 3808518 3809045 D hypothetical protein 3808518..3809045 Photorhabdus asymbiotica 8167049 YP_003042060.1 CDS PAU_03230 NC_012962.1 3809091 3809276 D hypothetical protein 3809091..3809276 Photorhabdus asymbiotica 8167050 YP_003042061.1 CDS PAU_03231 NC_012962.1 3809309 3809482 D hypothetical protein 3809309..3809482 Photorhabdus asymbiotica 8167051 YP_003042062.1 CDS PAU_03232 NC_012962.1 3809472 3809768 D hypothetical protein 3809472..3809768 Photorhabdus asymbiotica 8167052 YP_003042063.1 CDS PAU_03233 NC_012962.1 3809811 3811736 R Similar to C-terminal region of formate hydrogenlyase transcriptional activator complement(3809811..3811736) Photorhabdus asymbiotica 8167053 YP_003042064.1 CDS PAU_03234 NC_012962.1 3811978 3812466 D hypothetical protein 3811978..3812466 Photorhabdus asymbiotica 8167054 YP_003042065.1 CDS PAU_03235 NC_012962.1 3812497 3813504 D Putative secreted protein 3812497..3813504 Photorhabdus asymbiotica 8167055 YP_003042066.1 CDS PAU_03236 NC_012962.1 3813528 3814607 D hypothetical protein 3813528..3814607 Photorhabdus asymbiotica 8167056 YP_003042067.1 CDS PAU_03237 NC_012962.1 3814620 3815183 D hypothetical protein 3814620..3815183 Photorhabdus asymbiotica 8167057 YP_003042068.1 CDS PAU_03238 NC_012962.1 3815180 3816235 D hypothetical protein 3815180..3816235 Photorhabdus asymbiotica 8167058 YP_003042069.1 CDS PAU_03239 NC_012962.1 3816223 3816513 D hypothetical protein 3816223..3816513 Photorhabdus asymbiotica 8167059 YP_003042070.1 CDS PAU_03240 NC_012962.1 3816526 3817863 D hypothetical protein 3816526..3817863 Photorhabdus asymbiotica 8167060 YP_003042071.1 CDS PAU_03241 NC_012962.1 3818467 3819204 D ToxA protein 3818467..3819204 Photorhabdus asymbiotica 8167061 YP_003042072.1 CDS PAU_03242 NC_012962.1 3820456 3820662 D hypothetical protein 3820456..3820662 Photorhabdus asymbiotica 8167062 YP_003042073.1 CDS PAU_03243 NC_012962.1 3820736 3821152 D hypothetical protein 3820736..3821152 Photorhabdus asymbiotica 8167063 YP_003042074.1 CDS PAU_03244 NC_012962.1 3821130 3821540 R hypothetical protein complement(3821130..3821540) Photorhabdus asymbiotica 8167064 YP_003042075.1 CDS PAU_03245 NC_012962.1 3821567 3821968 D hypothetical protein 3821567..3821968 Photorhabdus asymbiotica 8167065 YP_003042076.1 CDS PAU_03246 NC_012962.1 3822006 3822407 D Similar to putative membrane protein 3822006..3822407 Photorhabdus asymbiotica 8167066 YP_003042077.1 CDS PAU_03247 NC_012962.1 3822400 3822846 D Similar to putative membrane protein 3822400..3822846 Photorhabdus asymbiotica 8167067 YP_003042078.1 CDS PAU_03248 NC_012962.1 3823285 3823569 D hypothetical protein 3823285..3823569 Photorhabdus asymbiotica 8167068 YP_003042079.1 CDS PAU_03249 NC_012962.1 3823559 3824071 D Putative acetyltransferase 3823559..3824071 Photorhabdus asymbiotica 8167069 YP_003042080.1 CDS PAU_03250 NC_012962.1 3824222 3824449 R Similar to putative exported protein complement(3824222..3824449) Photorhabdus asymbiotica 8167070 YP_003042081.1 CDS PAU_03251 NC_012962.1 3824463 3825491 R Thiamine biosynthesis lipoprotein ApbE complement(3824463..3825491) Photorhabdus asymbiotica 8167071 YP_003042082.1 CDS PAU_03252 NC_012962.1 3825696 3826922 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(3825696..3826922) Photorhabdus asymbiotica 8167072 YP_003042083.1 CDS PAU_03253 NC_012962.1 3826938 3827534 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(3826938..3827534) Photorhabdus asymbiotica 8167073 YP_003042084.1 CDS PAU_03254 NC_012962.1 3827543 3828172 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(3827543..3828172) Photorhabdus asymbiotica 8167074 YP_003042085.1 CDS PAU_03255 NC_012962.1 3828165 3828962 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(3828165..3828962) Photorhabdus asymbiotica 8167075 YP_003042086.1 CDS PAU_03256 NC_012962.1 3828955 3830193 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(3828955..3830193) Photorhabdus asymbiotica 8167076 YP_003042087.1 CDS PAU_03257 NC_012962.1 3830197 3831540 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(3830197..3831540) Photorhabdus asymbiotica 8167077 YP_003042088.1 CDS PAU_03258 NC_012962.1 3831956 3832690 D putative exported protein YafK 3831956..3832690 Photorhabdus asymbiotica 8167078 YP_003042089.1 CDS PAU_03259 NC_012962.1 3832661 3833428 R hypothetical protein complement(3832661..3833428) Photorhabdus asymbiotica 8167079 YP_003042090.1 CDS gmhA NC_012962.1 3833453 3834034 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(3833453..3834034) Photorhabdus asymbiotica 8167080 YP_003042091.1 CDS fadE NC_012962.1 3834294 3836729 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 3834294..3836729 Photorhabdus asymbiotica 8167081 YP_003042092.1 CDS PAU_03262 NC_012962.1 3837068 3837973 D Transcriptional regulator 3837068..3837973 Photorhabdus asymbiotica 8167082 YP_003042093.1 CDS PAU_03263 NC_012962.1 3838201 3838938 D hypothetical protein 3838201..3838938 Photorhabdus asymbiotica 8167083 YP_003042094.1 CDS PAU_03264 NC_012962.1 3839611 3840147 R hypothetical protein complement(3839611..3840147) Photorhabdus asymbiotica 8167084 YP_003042095.1 CDS PAU_03265 NC_012962.1 3840330 3840779 R Complete genome; segment 3/17 complement(3840330..3840779) Photorhabdus asymbiotica 8167085 YP_003042096.1 CDS PAU_03266 NC_012962.1 3841349 3841777 D Pyruvate carboxyltransferase 3841349..3841777 Photorhabdus asymbiotica 8167086 YP_003042097.1 CDS PAU_03267 NC_012962.1 3841781 3842356 D Hypothetical Protein Epoxidase 3841781..3842356 Photorhabdus asymbiotica 8167087 YP_003042098.1 CDS PAU_03268 NC_012962.1 3842438 3842587 R Transposase complement(3842438..3842587) Photorhabdus asymbiotica 8167088 YP_003042099.1 CDS PAU_03269 NC_012962.1 3842850 3844187 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(3842850..3844187) Photorhabdus asymbiotica 8167089 YP_003042100.1 CDS PAU_03270 NC_012962.1 3844312 3845247 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3844312..3845247 Photorhabdus asymbiotica 8167090 YP_003042101.1 CDS PAU_03271 NC_012962.1 3845230 3846147 R Transcriptional regulator, LysR family complement(3845230..3846147) Photorhabdus asymbiotica 8167091 YP_003042102.1 CDS PAU_03272 NC_012962.1 3846250 3847134 D hypothetical protein 3846250..3847134 Photorhabdus asymbiotica 8167092 YP_003042103.1 CDS PAU_03273 NC_012962.1 3847166 3847807 D hypothetical protein 3847166..3847807 Photorhabdus asymbiotica 8167093 YP_003042104.1 CDS PAU_03274 NC_012962.1 3847845 3848519 R Pilin biogenesis protein PilD complement(3847845..3848519) Photorhabdus asymbiotica 8167094 YP_003042105.1 CDS PAU_03275 NC_012962.1 3848735 3849547 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3848735..3849547 Photorhabdus asymbiotica 8167095 YP_003042106.1 CDS PAU_03276 NC_012962.1 3849558 3850508 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3849558..3850508 Photorhabdus asymbiotica 8167096 YP_003042107.1 CDS PAU_03277 NC_012962.1 3850616 3851179 D hypothetical protein 3850616..3851179 Photorhabdus asymbiotica 8167097 YP_003042108.1 CDS PAU_03278 NC_012962.1 3851180 3851599 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3851180..3851599 Photorhabdus asymbiotica 8167098 YP_003042109.1 CDS PAU_03279 NC_012962.1 3851641 3852642 R hypothetical protein complement(3851641..3852642) Photorhabdus asymbiotica 8167099 YP_003042110.1 CDS PAU_03280 NC_012962.1 3852664 3853359 D hypothetical protein 3852664..3853359 Photorhabdus asymbiotica 8167100 YP_003042111.1 CDS PAU_03281 NC_012962.1 3853385 3854206 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 3853385..3854206 Photorhabdus asymbiotica 8167101 YP_003042112.1 CDS PAU_03282 NC_012962.1 3854225 3854773 D Similar to putative resistance protein YggT 3854225..3854773 Photorhabdus asymbiotica 8167102 YP_003042113.1 CDS PAU_03283 NC_012962.1 3854799 3855395 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3854799..3855395 Photorhabdus asymbiotica 8167103 YP_003042114.1 CDS PAU_03284 NC_012962.1 3855388 3856518 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3855388..3856518 Photorhabdus asymbiotica 8167104 YP_003042115.1 CDS PAU_03285 NC_012962.1 3857412 3858074 D hypothetical protein 3857412..3858074 Photorhabdus asymbiotica 8167105 YP_003042116.1 CDS PAU_03286 NC_012962.1 3858809 3859759 R Iron compound ABC transporter complement(3858809..3859759) Photorhabdus asymbiotica 8167106 YP_003042117.1 CDS PAU_03287 NC_012962.1 3859876 3860598 R hypothetical protein complement(3859876..3860598) Photorhabdus asymbiotica 8167107 YP_003042118.1 CDS PAU_03288 NC_012962.1 3860627 3861580 R catalyzes the formation of glutamate from glutamine; glutaminase complement(3860627..3861580) Photorhabdus asymbiotica 8167108 YP_003042119.1 CDS PAU_03289 NC_012962.1 3861641 3861967 R hypothetical protein complement(3861641..3861967) Photorhabdus asymbiotica 8167109 YP_003042120.1 CDS trmB NC_012962.1 3861967 3862686 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3861967..3862686) Photorhabdus asymbiotica 8167110 YP_003042121.1 CDS PAU_03291 NC_012962.1 3862928 3863968 D adenine DNA glycosylase 3862928..3863968 Photorhabdus asymbiotica 8167111 YP_003042122.1 CDS PAU_03292 NC_012962.1 3864000 3864272 D hypothetical protein 3864000..3864272 Photorhabdus asymbiotica 8167112 YP_003042123.1 CDS mltC NC_012962.1 3864463 3865536 D Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 3864463..3865536 Photorhabdus asymbiotica 8167113 YP_003042124.1 CDS PAU_03294 NC_012962.1 3866163 3866405 R putative integrase-like protein complement(3866163..3866405) Photorhabdus asymbiotica 8167012 YP_003042125.1 CDS PAU_03295 NC_012962.1 3866446 3867648 R Probable phage integrase complement(3866446..3867648) Photorhabdus asymbiotica 8167115 YP_003042126.1 CDS PAU_03296 NC_012962.1 3867825 3868865 R hypothetical protein complement(3867825..3868865) Photorhabdus asymbiotica 8167116 YP_003042127.1 CDS PAU_03297 NC_012962.1 3869152 3869484 R hypothetical protein complement(3869152..3869484) Photorhabdus asymbiotica 8167117 YP_003042128.1 CDS PAU_03298 NC_012962.1 3869550 3870461 R hypothetical protein complement(3869550..3870461) Photorhabdus asymbiotica 8167118 YP_003042129.1 CDS PAU_03299 NC_012962.1 3870561 3872411 R hypothetical protein complement(3870561..3872411) Photorhabdus asymbiotica 8167119 YP_003042130.1 CDS PAU_03300 NC_012962.1 3872602 3873075 R hypothetical protein complement(3872602..3873075) Photorhabdus asymbiotica 8167120 YP_003042131.1 CDS PAU_03301 NC_012962.1 3873153 3873449 R hypothetical protein complement(3873153..3873449) Photorhabdus asymbiotica 8167121 YP_003042132.1 CDS PAU_03302 NC_012962.1 3873449 3873835 R hypothetical protein complement(3873449..3873835) Photorhabdus asymbiotica 8167122 YP_003042133.1 CDS PAU_03303 NC_012962.1 3873848 3874069 R hypothetical protein complement(3873848..3874069) Photorhabdus asymbiotica 8167123 YP_003042134.1 CDS PAU_03304 NC_012962.1 3874689 3875579 R DNA-binding prophage protein complement(3874689..3875579) Photorhabdus asymbiotica 8167124 YP_003042135.1 CDS PAU_03305 NC_012962.1 3877165 3877440 D hemolysin secretion/activation protein 3877165..3877440 Photorhabdus asymbiotica 8167125 YP_003042136.1 CDS PAU_03306 NC_012962.1 3877461 3886550 D Putative adhesin/hemagglutinin/hemolysin 3877461..3886550 Photorhabdus asymbiotica 8167126 YP_003042137.1 CDS gene0080 NC_012962.1 3887807 3891097 D putative dna primase 3887807..3891097 Photorhabdus asymbiotica 8168201 YP_003042138.1 CDS xerC NC_012962.1 3891084 3892214 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 3891084..3892214 Photorhabdus asymbiotica 8169405 YP_003042139.1 CDS gene0082 NC_012962.1 3892730 3893032 D complete genome; segment 4/17 3892730..3893032 Photorhabdus asymbiotica 8169406 YP_003042140.1 CDS PAU_03310 NC_012962.1 3893087 3893956 D hypothetical protein 3893087..3893956 Photorhabdus asymbiotica 8167698 YP_003042141.1 CDS gene0083 NC_012962.1 3895189 3898503 D putative dna primase 3895189..3898503 Photorhabdus asymbiotica 8168202 YP_003042142.1 CDS xerC NC_012962.1 3898490 3899620 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 3898490..3899620 Photorhabdus asymbiotica 8167699 YP_003042143.1 CDS PAU_03313 NC_012962.1 3900466 3901143 D Similar to hypothetical prophage protein 3900466..3901143 Photorhabdus asymbiotica 8167700 YP_003042144.1 CDS PAU_03314 NC_012962.1 3901140 3901439 D hypothetical protein 3901140..3901439 Photorhabdus asymbiotica 8168203 YP_003042145.1 CDS PAU_03315 NC_012962.1 3901448 3901651 D Similar to hypothetical prophage protein 3901448..3901651 Photorhabdus asymbiotica 8168204 YP_003042146.1 CDS PAU_03316 NC_012962.1 3901639 3901929 D Putative phage-related protein 3901639..3901929 Photorhabdus asymbiotica 8168205 YP_003042147.1 CDS PAU_03317 NC_012962.1 3901926 3902189 D hypothetical protein 3901926..3902189 Photorhabdus asymbiotica 8168206 YP_003042148.1 CDS PAU_03318 NC_012962.1 3902246 3902767 D hypothetical protein 3902246..3902767 Photorhabdus asymbiotica 8168207 YP_003042149.1 CDS PAU_03319 NC_012962.1 3902764 3903096 D hypothetical protein 3902764..3903096 Photorhabdus asymbiotica 8168208 YP_003042150.1 CDS PAU_03320 NC_012962.1 3903133 3903834 D hypothetical protein 3903133..3903834 Photorhabdus asymbiotica 8168209 YP_003042151.1 CDS PAU_03321 NC_012962.1 3903931 3904473 D hypothetical protein 3903931..3904473 Photorhabdus asymbiotica 8168210 YP_003042152.1 CDS PAU_03322 NC_012962.1 3904541 3904678 R hypothetical protein complement(3904541..3904678) Photorhabdus asymbiotica 8168211 YP_003042153.1 CDS PAU_03323 NC_012962.1 3904877 3905242 D hypothetical protein 3904877..3905242 Photorhabdus asymbiotica 8168212 YP_003042154.1 CDS PAU_03324 NC_012962.1 3905521 3906012 D hypothetical protein 3905521..3906012 Photorhabdus asymbiotica 8168213 YP_003042155.1 CDS PAU_03325 NC_012962.1 3906039 3906344 D Transposase 3906039..3906344 Photorhabdus asymbiotica 8168214 YP_003042156.1 CDS PAU_03326 NC_012962.1 3906331 3907023 D Transposase 3906331..3907023 Photorhabdus asymbiotica 8168215 YP_003042157.1 CDS PAU_03327 NC_012962.1 3907031 3907390 D hypothetical protein 3907031..3907390 Photorhabdus asymbiotica 8168216 YP_003042158.1 CDS PAU_03328 NC_012962.1 3907451 3907696 D hypothetical protein 3907451..3907696 Photorhabdus asymbiotica 8168217 YP_003042159.1 CDS PAU_03329 NC_012962.1 3907742 3908419 R Putative endopeptidase protein Rz of prophage complement(3907742..3908419) Photorhabdus asymbiotica 8168218 YP_003042160.1 CDS PAU_03330 NC_012962.1 3908480 3908983 R Phage related lysozyme complement(3908480..3908983) Photorhabdus asymbiotica 8168219 YP_003042161.1 CDS PAU_03331 NC_012962.1 3909373 3909567 R hypothetical protein complement(3909373..3909567) Photorhabdus asymbiotica 8168220 YP_003042162.1 CDS PAU_03332 NC_012962.1 3910016 3911038 R Cytotoxic necrotizing factor 1 complement(3910016..3911038) Photorhabdus asymbiotica 8168221 YP_003042163.1 CDS PAU_03333 NC_012962.1 3911545 3911841 R Putative lysR-family transcriptional regulatory protein complement(3911545..3911841) Photorhabdus asymbiotica 8168222 YP_003042164.1 CDS PAU_03334 NC_012962.1 3911975 3912223 R Transposase complement(3911975..3912223) Photorhabdus asymbiotica 8168223 YP_003042165.1 CDS PAU_03335 NC_012962.1 3912462 3912635 R hypothetical protein complement(3912462..3912635) Photorhabdus asymbiotica 8168224 YP_003042166.1 CDS PAU_03336 NC_012962.1 3912755 >3912886 R Cytochrome oxidase subunit II (pseudogene) complement(3912755..>3912886) Photorhabdus asymbiotica 8168225 YP_003042167.1 CDS PAU_03337 NC_012962.1 3913237 3914247 R Similarities with C-terminal region of insecticial toxin; Putative Insecticial toxin complement(3913237..3914247) Photorhabdus asymbiotica 8168226 YP_003042168.1 CDS PAU_03338 NC_012962.1 3914573 3915454 R hypothetical protein complement(3914573..3915454) Photorhabdus asymbiotica 8168227 YP_003042169.1 CDS PAU_03339 NC_012962.1 3915538 3917634 R hypothetical protein complement(3915538..3917634) Photorhabdus asymbiotica 8168228 YP_003042170.1 CDS PAU_03340 NC_012962.1 3917670 3919385 R hypothetical protein complement(3917670..3919385) Photorhabdus asymbiotica 8168229 YP_003042171.1 CDS PAU_03341 NC_012962.1 3919442 3920968 R hypothetical protein complement(3919442..3920968) Photorhabdus asymbiotica 8168230 YP_003042172.1 CDS PAU_03342 NC_012962.1 3921027 3923879 R hypothetical protein complement(3921027..3923879) Photorhabdus asymbiotica 8168231 YP_003042173.1 CDS PAU_03343 NC_012962.1 3923872 3926058 R hypothetical protein complement(3923872..3926058) Photorhabdus asymbiotica 8168232 YP_003042174.1 CDS PAU_03344 NC_012962.1 3926150 3926575 R hypothetical protein complement(3926150..3926575) Photorhabdus asymbiotica 8168233 YP_003042175.1 CDS PAU_03345 NC_012962.1 3926572 3926994 R Phage baseplate assembly protein complement(3926572..3926994) Photorhabdus asymbiotica 8168234 YP_003042176.1 CDS PAU_03346 NC_012962.1 3927008 3928624 R hypothetical protein complement(3927008..3928624) Photorhabdus asymbiotica 8168235 YP_003042177.1 CDS PAU_03347 NC_012962.1 3928621 3929310 R hypothetical protein complement(3928621..3929310) Photorhabdus asymbiotica 8168236 YP_003042178.1 CDS PAU_03348 NC_012962.1 3929307 3929489 R hypothetical protein complement(3929307..3929489) Photorhabdus asymbiotica 8168237 YP_003042179.1 CDS PAU_03349 NC_012962.1 3929486 3929944 R hypothetical protein complement(3929486..3929944) Photorhabdus asymbiotica 8168238 YP_003042180.1 CDS PAU_03350 NC_012962.1 3929960 3931234 R hypothetical protein complement(3929960..3931234) Photorhabdus asymbiotica 8168239 YP_003042181.1 CDS PAU_03351 NC_012962.1 3931263 3932585 R hypothetical protein complement(3931263..3932585) Photorhabdus asymbiotica 8168240 YP_003042182.1 CDS PAU_03352 NC_012962.1 3932609 3933676 R hypothetical protein complement(3932609..3933676) Photorhabdus asymbiotica 8168241 YP_003042183.1 CDS PAU_03353 NC_012962.1 3933715 3934164 R Conserved hypothetical phage tail region protein complement(3933715..3934164) Photorhabdus asymbiotica 8168242 YP_003042184.1 CDS PAU_03354 NC_012962.1 3934527 3934835 D Putative phage-related protein 3934527..3934835 Photorhabdus asymbiotica 8168243 YP_003042185.1 CDS PAU_03355 NC_012962.1 3934832 3935230 D Phage-related protein precursor 3934832..3935230 Photorhabdus asymbiotica 8168244 YP_003042186.1 CDS PAU_03356 NC_012962.1 3935964 3946919 D Gramicidin S synthetase 2 3935964..3946919 Photorhabdus asymbiotica 8168245 YP_003042187.1 CDS PAU_03357 NC_012962.1 3946923 3954239 D Gramicidin S synthetase 2 3946923..3954239 Photorhabdus asymbiotica 8168246 YP_003042188.1 CDS PAU_03358 NC_012962.1 3954447 3954707 D Transposase 3954447..3954707 Photorhabdus asymbiotica 8168247 YP_003042189.1 CDS PAU_03359 NC_012962.1 3954751 3954948 D Transposase 3954751..3954948 Photorhabdus asymbiotica 8168248 YP_003042190.1 CDS PAU_03360 NC_012962.1 3954984 3955373 R hypothetical protein complement(3954984..3955373) Photorhabdus asymbiotica 8168249 YP_003042191.1 CDS PAU_03361 NC_012962.1 3955550 3955717 D hypothetical protein 3955550..3955717 Photorhabdus asymbiotica 8168250 YP_003042192.1 CDS PAU_03362 NC_012962.1 3955753 3956085 R hypothetical protein complement(3955753..3956085) Photorhabdus asymbiotica 8168251 YP_003042193.1 CDS PAU_03363 NC_012962.1 3956082 3956426 R hypothetical protein complement(3956082..3956426) Photorhabdus asymbiotica 8168252 YP_003042194.1 CDS PAU_03364 NC_012962.1 3956555 3956881 R hypothetical protein complement(3956555..3956881) Photorhabdus asymbiotica 8168253 YP_003042195.1 CDS PAU_03365 NC_012962.1 3957127 3957480 R hypothetical protein complement(3957127..3957480) Photorhabdus asymbiotica 8168254 YP_003042196.1 CDS PAU_03366 NC_012962.1 3957477 3958361 R hypothetical protein complement(3957477..3958361) Photorhabdus asymbiotica 8168255 YP_003042197.1 CDS PAU_03367 NC_012962.1 3958873 3959160 D hypothetical protein 3958873..3959160 Photorhabdus asymbiotica 8168256 YP_003042198.1 CDS albVII NC_012962.1 3959356 3962517 R acetyl-CoA synthetase complement(3959356..3962517) Photorhabdus asymbiotica 8168257 YP_003042199.1 CDS PAU_03369 NC_012962.1 3962994 3971975 R MCF toxin complement(3962994..3971975) Photorhabdus asymbiotica 8166769 YP_003042200.1 CDS PAU_03370 NC_012962.1 3972758 3973327 R Flavoprotein complement(3972758..3973327) Photorhabdus asymbiotica 8168258 YP_003042201.1 CDS PAU_03371 NC_012962.1 3973415 3973879 R hypothetical protein complement(3973415..3973879) Photorhabdus asymbiotica 8168259 YP_003042202.1 CDS PAU_03372 NC_012962.1 3973930 3974799 R hypothetical protein complement(3973930..3974799) Photorhabdus asymbiotica 8168260 YP_003042203.1 CDS PAU_03373 NC_012962.1 3974831 3975835 R Oxidoreductase complement(3974831..3975835) Photorhabdus asymbiotica 8168261 YP_003042204.1 CDS mtaC NC_012962.1 3975847 3978483 R putative antibiotic synthesis complement(3975847..3978483) Photorhabdus asymbiotica 8168262 YP_003042205.1 CDS PAU_03375 NC_012962.1 3978432 3979271 R putative peptide synthetase complement(3978432..3979271) Photorhabdus asymbiotica 8166388 YP_003042206.1 CDS PAU_03376 NC_012962.1 3979395 3979631 R hypothetical protein complement(3979395..3979631) Photorhabdus asymbiotica 8168263 YP_003042207.1 CDS PAU_03377 NC_012962.1 3979807 3981264 D Putative transmembrane efflux protein 3979807..3981264 Photorhabdus asymbiotica 8168264 YP_003042208.1 CDS PAU_03378 NC_012962.1 3981340 3982011 R Transcriptional regulator complement(3981340..3982011) Photorhabdus asymbiotica 8168265 YP_003042209.1 CDS PAU_03379 NC_012962.1 3982308 3982679 D hypothetical protein 3982308..3982679 Photorhabdus asymbiotica 8168266 YP_003042210.1 CDS PAU_03380 NC_012962.1 3982909 3984219 R Inosine-guanosine kinase complement(3982909..3984219) Photorhabdus asymbiotica 8168267 YP_003042211.1 CDS PAU_03381 NC_012962.1 3984319 3985425 R part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE complement(3984319..3985425) Photorhabdus asymbiotica 8168268 YP_003042212.1 CDS PAU_03382 NC_012962.1 3985605 3986588 R Ferrochelatase complement(3985605..3986588) Photorhabdus asymbiotica 8168269 YP_003042213.1 CDS adk NC_012962.1 3986753 3987409 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(3986753..3987409) Photorhabdus asymbiotica 8168270 YP_003042214.1 CDS PAU_03384 NC_012962.1 3987593 3989491 R molecular chaperone; heat shock protein 90 complement(3987593..3989491) Photorhabdus asymbiotica 8168271 YP_003042215.1 CDS PAU_03385 NC_012962.1 3989617 >3989751 R hypothetical protein complement(3989617..>3989751) Photorhabdus asymbiotica 8168272 YP_003042216.1 CDS recR NC_012962.1 3989744 3990349 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(3989744..3990349) Photorhabdus asymbiotica 8168273 YP_003042217.1 CDS PAU_03387 NC_012962.1 3990349 3990678 R hypothetical protein complement(3990349..3990678) Photorhabdus asymbiotica 8168274 YP_003042218.1 CDS PAU_03388 NC_012962.1 3990732 3992708 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(3990732..3992708) Photorhabdus asymbiotica 8168275 YP_003042219.1 CDS PAU_03389 NC_012962.1 3992805 3993431 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(3992805..3993431) Photorhabdus asymbiotica 8168276 YP_003042220.1 CDS PAU_03390 NC_012962.1 3993500 3994042 D Primosomal replication protein N 3993500..3994042 Photorhabdus asymbiotica 8168277 YP_003042221.1 CDS PAU_03391 NC_012962.1 3994065 3994241 D hypothetical protein 3994065..3994241 Photorhabdus asymbiotica 8168278 YP_003042222.1 CDS PAU_03392 NC_012962.1 3994473 3994940 R hypothetical protein complement(3994473..3994940) Photorhabdus asymbiotica 8168279 YP_003042223.1 CDS PAU_03393 NC_012962.1 3995021 3995794 D hypothetical protein 3995021..3995794 Photorhabdus asymbiotica 8168601 YP_003042224.1 CDS PAU_03394 NC_012962.1 3996034 3996573 R Biotin synthase complement(3996034..3996573) Photorhabdus asymbiotica 8165738 YP_003042225.1 CDS PAU_03395 NC_012962.1 3996613 3997242 R ABC transporter for cobalt complement(3996613..3997242) Photorhabdus asymbiotica 8165739 YP_003042226.1 CDS PAU_03396 NC_012962.1 3997239 3997913 R Cobalt import ATP-binding protein complement(3997239..3997913) Photorhabdus asymbiotica 8165740 YP_003042227.1 CDS PAU_03397 NC_012962.1 3998309 3998950 R regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR complement(3998309..3998950) Photorhabdus asymbiotica 8165741 YP_003042228.1 CDS PAU_03398 NC_012962.1 3999080 4000273 D Acriflavin resistance protein A 3999080..4000273 Photorhabdus asymbiotica 8165742 YP_003042229.1 CDS PAU_03399 NC_012962.1 4000292 4003441 D Acridine efflux pump 4000292..4003441 Photorhabdus asymbiotica 8165743 YP_003042230.1 CDS PAU_03400 NC_012962.1 4004310 4004483 D hypothetical protein 4004310..4004483 Photorhabdus asymbiotica 8165744 YP_003042231.1 CDS PAU_03401 NC_012962.1 4004476 4004679 D with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein 4004476..4004679 Photorhabdus asymbiotica 8165745 YP_003042232.1 CDS PAU_03402 NC_012962.1 4004992 4005438 R hypothetical protein complement(4004992..4005438) Photorhabdus asymbiotica 8167013 YP_003042233.1 CDS PAU_03403 NC_012962.1 4005687 4006550 D Acyl-CoA thioesterase II (TEII) 4005687..4006550 Photorhabdus asymbiotica 8165747 YP_003042234.1 CDS PAU_03404 NC_012962.1 4006623 4007906 R ammonium transporter complement(4006623..4007906) Photorhabdus asymbiotica 8165748 YP_003042235.1 CDS PAU_03405 NC_012962.1 4007929 4008282 R indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 complement(4007929..4008282) Photorhabdus asymbiotica 8165749 YP_003042236.1 CDS PAU_03406 NC_012962.1 4008447 4010231 R putative multidrug transporter membrane\ATP-binding components complement(4008447..4010231) Photorhabdus asymbiotica 8165750 YP_003042237.1 CDS PAU_03407 NC_012962.1 4010224 4011996 R putative multidrug transporter membrane\ATP-binding components complement(4010224..4011996) Photorhabdus asymbiotica 8165751 YP_003042238.1 CDS PAU_03408 NC_012962.1 4012077 4012538 R HTH-type transcriptional regulator ybaO complement(4012077..4012538) Photorhabdus asymbiotica 8165752 YP_003042239.1 CDS cysK1 NC_012962.1 4012665 4013717 D putative cysteine synthase (putative pyridoxal-phosphate dependen protein) 4012665..4013717 Photorhabdus asymbiotica 8165753 YP_003042240.1 CDS PAU_03410 NC_012962.1 4013750 4014448 D YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 4013750..4014448 Photorhabdus asymbiotica 8169138 YP_003042241.1 CDS PAU_03411 NC_012962.1 4014477 4014941 R hypothetical protein complement(4014477..4014941) Photorhabdus asymbiotica 8165754 YP_003042242.1 CDS PAU_03412 NC_012962.1 4015041 4015415 R hypothetical protein complement(4015041..4015415) Photorhabdus asymbiotica 8165755 YP_003042243.1 CDS PAU_03413 NC_012962.1 4015566 4017437 R peptidyl-prolyl cis-trans isomerase (rotamase D) complement(4015566..4017437) Photorhabdus asymbiotica 8165756 YP_003042244.1 CDS PAU_03414 NC_012962.1 4017606 4017905 R DNA-binding protein HU-beta (NS1) (HU-1) complement(4017606..4017905) Photorhabdus asymbiotica 8165757 YP_003042245.1 CDS PAU_03415 NC_012962.1 4018110 4020464 R DNA-binding ATP-dependent protease La complement(4018110..4020464) Photorhabdus asymbiotica 8165758 YP_003042246.1 CDS clpX NC_012962.1 4020673 4021944 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(4020673..4021944) Photorhabdus asymbiotica 8165759 YP_003042247.1 CDS clpP NC_012962.1 4022087 4022710 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(4022087..4022710) Photorhabdus asymbiotica 8165760 YP_003042248.1 CDS PAU_03418 NC_012962.1 4023110 4023310 D hypothetical protein 4023110..4023310 Photorhabdus asymbiotica 8165761 YP_003042249.1 CDS PAU_03419 NC_012962.1 4023572 4023721 D hypothetical protein 4023572..4023721 Photorhabdus asymbiotica 8165762 YP_003042250.1 CDS PAU_03420 NC_012962.1 4023965 4024165 D hypothetical protein 4023965..4024165 Photorhabdus asymbiotica 8165763 YP_003042251.1 CDS waaQ NC_012962.1 4024217 4025167 D putative heptosyl III transferase 4024217..4025167 Photorhabdus asymbiotica 8165764 YP_003042252.1 CDS tig NC_012962.1 4025299 4026603 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(4025299..4026603) Photorhabdus asymbiotica 8168452 YP_003042253.1 CDS PAU_03423 NC_012962.1 4026981 4027340 R positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA complement(4026981..4027340) Photorhabdus asymbiotica 8165765 YP_003042254.1 CDS PAU_03424 NC_012962.1 4027541 4028119 D hypothetical protein 4027541..4028119 Photorhabdus asymbiotica 8165766 YP_003042255.1 CDS ampG NC_012962.1 4028172 4029656 D in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter 4028172..4029656 Photorhabdus asymbiotica 8165767 YP_003042256.1 CDS PAU_03426 NC_012962.1 4029877 4030659 D hypothetical protein 4029877..4030659 Photorhabdus asymbiotica 8165768 YP_003042257.1 CDS PAU_03427 NC_012962.1 4031012 4031947 D cytochrome o ubiquinol oxidase subunit II 4031012..4031947 Photorhabdus asymbiotica 8165769 YP_003042258.1 CDS PAU_03428 NC_012962.1 4031952 4033943 D Ubiquinol oxidase polypeptide I (Cytochrome O subunit 1) (Oxidase BO(3) subunit 1) (Cytochrome O ubiquinol oxidase subunit 1) (Ubiquinol oxidase chain A) 4031952..4033943 Photorhabdus asymbiotica 8165770 YP_003042259.1 CDS PAU_03429 NC_012962.1 4033933 4034553 D cytochrome o ubiquinol oxidase subunit III 4033933..4034553 Photorhabdus asymbiotica 8165771 YP_003042260.1 CDS PAU_03430 NC_012962.1 4034553 4034885 D cytochrome o ubiquinol oxidase subunit IV 4034553..4034885 Photorhabdus asymbiotica 8165772 YP_003042261.1 CDS PAU_03431 NC_012962.1 4034898 4035782 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4034898..4035782 Photorhabdus asymbiotica 8165773 YP_003042262.1 CDS PAU_03432 NC_012962.1 4035935 4037311 D putative transport protein yajR 4035935..4037311 Photorhabdus asymbiotica 8165774 YP_003042263.1 CDS PAU_03433 NC_012962.1 4037644 4038135 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(4037644..4038135) Photorhabdus asymbiotica 8165775 YP_003042264.1 CDS PAU_03434 NC_012962.1 4038267 4039178 D ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 4038267..4039178 Photorhabdus asymbiotica 8165776 YP_003042265.1 CDS PAU_03435 NC_012962.1 4039141 4039731 D Protein thiJ 4039141..4039731 Photorhabdus asymbiotica 8165777 YP_003042266.1 CDS PAU_03436 NC_012962.1 4039816 4041264 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(4039816..4041264) Photorhabdus asymbiotica 8165778 YP_003042267.1 CDS PAU_03437 NC_012962.1 4041466 4041744 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 4041466..4041744 Photorhabdus asymbiotica 8165779 YP_003042268.1 CDS PAU_03438 NC_012962.1 4041749 4042666 D Geranyltranstransferase (Farnesyl-diphosphate synthase) FPP synthase 4041749..4042666 Photorhabdus asymbiotica 8165780 YP_003042269.1 CDS PAU_03439 NC_012962.1 4042729 4044594 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 4042729..4044594 Photorhabdus asymbiotica 8165781 YP_003042270.1 CDS PAU_03440 NC_012962.1 4045323 4045796 R hypothetical protein complement(4045323..4045796) Photorhabdus asymbiotica 8165782 YP_003042271.1 CDS PAU_03441 NC_012962.1 4045793 4046731 R hypothetical protein complement(4045793..4046731) Photorhabdus asymbiotica 8165783 YP_003042272.1 CDS PAU_03442 NC_012962.1 <4047167 4047403 D hypothetical protein <4047167..4047403 Photorhabdus asymbiotica 8165784 YP_003042273.1 CDS PAU_03443 NC_012962.1 4047901 4048134 R hypothetical protein complement(4047901..4048134) Photorhabdus asymbiotica 8165785 YP_003042274.1 CDS PAU_03444 NC_012962.1 4048439 4048654 R hypothetical protein complement(4048439..4048654) Photorhabdus asymbiotica 8165786 YP_003042275.1 CDS PAU_03445 NC_012962.1 4048661 4049305 R hypothetical protein complement(4048661..4049305) Photorhabdus asymbiotica 8165787 YP_003042276.1 CDS PAU_03446 NC_012962.1 4049317 4050315 R hypothetical protein complement(4049317..4050315) Photorhabdus asymbiotica 8165788 YP_003042277.1 CDS PAU_03447 NC_012962.1 4050315 4050671 R hypothetical protein complement(4050315..4050671) Photorhabdus asymbiotica 8165789 YP_003042278.1 CDS PAU_03448 NC_012962.1 4050695 4051447 R Putative outer membrane protein complement(4050695..4051447) Photorhabdus asymbiotica 8165790 YP_003042279.1 CDS PAU_03449 NC_012962.1 4051473 4052513 R Putative type III secretion system EscU protein complement(4051473..4052513) Photorhabdus asymbiotica 8165791 YP_003042280.1 CDS PAU_03450 NC_012962.1 4052529 4054418 R Putative type III secretion system EscV protein complement(4052529..4054418) Photorhabdus asymbiotica 8165792 YP_003042281.1 CDS PAU_03451 NC_012962.1 4054411 4055028 R hypothetical protein complement(4054411..4055028) Photorhabdus asymbiotica 8165793 YP_003042282.1 CDS PAU_03452 NC_012962.1 4055125 4058442 R hypothetical protein complement(4055125..4058442) Photorhabdus asymbiotica 8165794 YP_003042283.1 CDS PAU_03453 NC_012962.1 4058735 4059277 R hypothetical protein complement(4058735..4059277) Photorhabdus asymbiotica 8165795 YP_003042284.1 CDS PAU_03454 NC_012962.1 4059305 4059733 R hypothetical protein complement(4059305..4059733) Photorhabdus asymbiotica 8165796 YP_003042285.1 CDS PAU_03455 NC_012962.1 4059726 4060283 R hypothetical protein complement(4059726..4060283) Photorhabdus asymbiotica 8165797 YP_003042286.1 CDS PAU_03456 NC_012962.1 4060324 4061058 R hypothetical protein complement(4060324..4061058) Photorhabdus asymbiotica 8165798 YP_003042287.1 CDS PAU_03457 NC_012962.1 4061073 4062113 R hypothetical protein complement(4061073..4062113) Photorhabdus asymbiotica 8165799 YP_003042288.1 CDS PAU_03458 NC_012962.1 4062218 4063429 R hypothetical protein complement(4062218..4063429) Photorhabdus asymbiotica 8165800 YP_003042289.1 CDS PAU_03459 NC_012962.1 4063754 4064926 R hypothetical protein complement(4063754..4064926) Photorhabdus asymbiotica 8165801 YP_003042290.1 CDS PAU_03460 NC_012962.1 4064939 4065445 R Putative two-component response regulator complement(4064939..4065445) Photorhabdus asymbiotica 8165802 YP_003042291.1 CDS PAU_03461 NC_012962.1 4065464 4065931 R Putative two-component response regulator complement(4065464..4065931) Photorhabdus asymbiotica 8165803 YP_003042292.1 CDS PAU_03462 NC_012962.1 4065918 4066475 R hypothetical protein complement(4065918..4066475) Photorhabdus asymbiotica 8165804 YP_003042293.1 CDS PAU_03463 NC_012962.1 4066475 4066732 R hypothetical protein complement(4066475..4066732) Photorhabdus asymbiotica 8165805 YP_003042294.1 CDS PAU_03464 NC_012962.1 4066970 4067506 R hypothetical protein complement(4066970..4067506) Photorhabdus asymbiotica 8165806 YP_003042295.1 CDS PAU_03465 NC_012962.1 4068209 4068586 R hypothetical protein complement(4068209..4068586) Photorhabdus asymbiotica 8165807 YP_003042296.1 CDS PAU_03466 NC_012962.1 4068626 4068859 R Putative type III secretion apparatus protein complement(4068626..4068859) Photorhabdus asymbiotica 8165808 YP_003042297.1 CDS PAU_03467 NC_012962.1 4068846 4070030 R hypothetical protein complement(4068846..4070030) Photorhabdus asymbiotica 8165809 YP_003042298.1 CDS PAU_03468 NC_012962.1 4070041 4070319 R hypothetical protein complement(4070041..4070319) Photorhabdus asymbiotica 8165810 YP_003042299.1 CDS PAU_03469 NC_012962.1 4070384 4071604 R Putative Type III secretion ATP synthase hrcN complement(4070384..4071604) Photorhabdus asymbiotica 8165811 YP_003042300.1 CDS PAU_03470 NC_012962.1 4071646 4073121 R Putative type III secretion system EscC protein complement(4071646..4073121) Photorhabdus asymbiotica 8165812 YP_003042301.1 CDS PAU_03471 NC_012962.1 4073111 4073374 R hypothetical protein complement(4073111..4073374) Photorhabdus asymbiotica 8165813 YP_003042302.1 CDS PAU_03472 NC_012962.1 4073367 4074062 R hypothetical protein complement(4073367..4074062) Photorhabdus asymbiotica 8165814 YP_003042303.1 CDS PAU_03473 NC_012962.1 4074059 4074769 R part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein complement(4074059..4074769) Photorhabdus asymbiotica 8165815 YP_003042304.1 CDS PAU_03474 NC_012962.1 4074825 4075100 R hypothetical protein complement(4074825..4075100) Photorhabdus asymbiotica 8165816 YP_003042305.1 CDS PAU_03475 NC_012962.1 4075754 4076128 D hypothetical protein 4075754..4076128 Photorhabdus asymbiotica 8165817 YP_003042306.1 CDS PAU_03476 NC_012962.1 4076438 4076614 R hypothetical protein complement(4076438..4076614) Photorhabdus asymbiotica 8165818 YP_003042307.1 CDS PAU_03477 NC_012962.1 4076823 4076975 D hypothetical protein 4076823..4076975 Photorhabdus asymbiotica 8166063 YP_003042308.1 CDS PAU_03478 NC_012962.1 4077100 4078521 D hypothetical protein 4077100..4078521 Photorhabdus asymbiotica 8166064 YP_003042309.1 CDS PAU_03479 NC_012962.1 4078891 4079955 R hypothetical protein complement(4078891..4079955) Photorhabdus asymbiotica 8165984 YP_003042310.1 CDS PAU_03480 NC_012962.1 4081058 4081549 R hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A complement(4081058..4081549) Photorhabdus asymbiotica 8165985 YP_003042311.1 CDS PAU_03481 NC_012962.1 4081542 4082531 R catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase complement(4081542..4082531) Photorhabdus asymbiotica 8165986 YP_003042312.1 CDS nusB NC_012962.1 4082629 4083048 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(4082629..4083048) Photorhabdus asymbiotica 8165987 YP_003042313.1 CDS ribH NC_012962.1 4083075 4083545 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(4083075..4083545) Photorhabdus asymbiotica 8165988 YP_003042314.1 CDS ribD NC_012962.1 4083671 4084759 R riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase complement(4083671..4084759) Photorhabdus asymbiotica 8165989 YP_003042315.1 CDS PAU_03485 NC_012962.1 4084788 4085186 R hypothetical protein complement(4084788..4085186) Photorhabdus asymbiotica 8165990 YP_003042316.1 CDS PAU_03486 NC_012962.1 4085198 4085299 R hypothetical protein complement(4085198..4085299) Photorhabdus asymbiotica 8165991 YP_003042317.1 CDS secF NC_012962.1 4085348 4086316 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(4085348..4086316) Photorhabdus asymbiotica 8165992 YP_003042318.1 CDS secD NC_012962.1 4086327 4088174 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(4086327..4088174) Photorhabdus asymbiotica 8165993 YP_003042319.1 CDS PAU_03489 NC_012962.1 4088202 4088600 R hypothetical protein complement(4088202..4088600) Photorhabdus asymbiotica 8165994 YP_003042320.1 CDS tgt NC_012962.1 4088680 4089804 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(4088680..4089804) Photorhabdus asymbiotica 8165995 YP_003042321.1 CDS queA NC_012962.1 4089984 4091051 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(4089984..4091051) Photorhabdus asymbiotica 8165996 YP_003042322.1 CDS PAU_03492 NC_012962.1 4091156 4091752 D Acyl carrier protein phosphodiesterase 4091156..4091752 Photorhabdus asymbiotica 8165997 YP_003042323.1 CDS PAU_03493 NC_012962.1 4091983 4092585 D hypothetical protein 4091983..4092585 Photorhabdus asymbiotica 8165998 YP_003042324.1 CDS PAU_03494 NC_012962.1 4092657 4093391 D Transposase 4092657..4093391 Photorhabdus asymbiotica 8165999 YP_003042325.1 CDS PAU_03495 NC_012962.1 4093372 4093695 D Transposase 4093372..4093695 Photorhabdus asymbiotica 8166000 YP_003042326.1 CDS PAU_03496 NC_012962.1 4093742 4094515 R YadA protein complement(4093742..4094515) Photorhabdus asymbiotica 8166001 YP_003042327.1 CDS PAU_03497 NC_012962.1 4094584 4095090 R Transposase complement(4094584..4095090) Photorhabdus asymbiotica 8166002 YP_003042328.1 CDS PAU_03498 NC_012962.1 4095338 4095445 R hypothetical protein complement(4095338..4095445) Photorhabdus asymbiotica 8166003 YP_003042329.1 CDS PAU_03499 NC_012962.1 4095566 4097326 D Gamma-glutamyltranspeptidase 4095566..4097326 Photorhabdus asymbiotica 8166004 YP_003042330.1 CDS PAU_03500 NC_012962.1 4097469 4098800 R Branched chain amino acid transport system II carrier protein complement(4097469..4098800) Photorhabdus asymbiotica 8166005 YP_003042331.1 CDS phoR NC_012962.1 4099151 4100488 R membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein complement(4099151..4100488) Photorhabdus asymbiotica 8166006 YP_003042332.1 CDS phoB NC_012962.1 4100512 4101201 R phosphate regulon transcriptional regulatory protein phob complement(4100512..4101201) Photorhabdus asymbiotica 8168735 YP_003042333.1 CDS sbcD NC_012962.1 4101254 4102720 D with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 4101254..4102720 Photorhabdus asymbiotica 8168731 YP_003042334.1 CDS sbcC NC_012962.1 4102935 4106624 D nuclease sbccd subunit c 4102935..4106624 Photorhabdus asymbiotica 8167178 YP_003042335.1 CDS PAU_03505 NC_012962.1 4106769 4108430 R putative 5`-nucleotidase family protein precursor complement(4106769..4108430) Photorhabdus asymbiotica 8167177 YP_003042336.1 CDS PAU_03506 NC_012962.1 4108417 4109196 R ribonuclease i-like complement(4108417..4109196) Photorhabdus asymbiotica 8166007 YP_003042337.1 CDS cpdB NC_012962.1 4109280 4111235 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein complement(4109280..4111235) Photorhabdus asymbiotica 8166008 YP_003042338.1 CDS rdgC NC_012962.1 4111640 4112551 D Required for efficient pilin antigenic variation; recombination associated protein 4111640..4112551 Photorhabdus asymbiotica 8169087 YP_003042339.1 CDS PAU_03509 NC_012962.1 4113197 4114045 D hypothetical protein 4113197..4114045 Photorhabdus asymbiotica 8165149 YP_003042340.1 CDS fdp1 NC_012962.1 4114179 4115198 D The Fic (filamentation induced by cAMP) protein is involved in the synthesis of PAB or folate. It would appear that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism and in these organisims cell division could be controlled by coordination of cAMP, Fic and Fts proteins.; hypothetical protein 4114179..4115198 Photorhabdus asymbiotica 8166009 YP_003042341.1 CDS PAU_03511 NC_012962.1 4115546 4117291 R glycoside hydrolase, family 39 precursor complement(4115546..4117291) Photorhabdus asymbiotica 8166519 YP_003042342.1 CDS PFE0360c NC_012962.1 4117637 4117765 D hypothetical protein 4117637..4117765 Photorhabdus asymbiotica 8166010 YP_003042343.1 CDS FNV0471 NC_012962.1 4118050 4118958 D hypothetical protein 4118050..4118958 Photorhabdus asymbiotica 8168705 YP_003042344.1 CDS exbD NC_012962.1 4119626 4120051 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD complement(4119626..4120051) Photorhabdus asymbiotica 8168138 YP_003042345.1 CDS exbB NC_012962.1 4120056 4121216 R Fe transport; biopolymer transport exbb protein complement(4120056..4121216) Photorhabdus asymbiotica 8166485 YP_003042346.1 CDS metC NC_012962.1 4121506 4122699 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 4121506..4122699 Photorhabdus asymbiotica 8166484 YP_003042347.1 CDS sohA NC_012962.1 4122831 4123181 D SohA; PrlF; involved in protein secretion; when overproduced or mutated, it induces growth defect and increased export of a reporter protein; a PrlF mutation induces the activity of the Lon protease, and a Lon-deficient strain suppresses the phenotype conferred by the PrlF mutation; putative regulator PrlF 4122831..4123181 Photorhabdus asymbiotica 8168991 YP_003042348.1 CDS PAU_03518 NC_012962.1 4123188 4123682 D hypothetical protein 4123188..4123682 Photorhabdus asymbiotica 8167663 YP_003042349.1 CDS ydcM NC_012962.1 4123766 4124071 R putative is element transposase complement(4123766..4124071) Photorhabdus asymbiotica 8166011 YP_003042350.1 CDS PAU_03520 NC_012962.1 4124373 4124522 D putative transposase 4124373..4124522 Photorhabdus asymbiotica 8165419 YP_003042351.1 CDS yghB NC_012962.1 4124727 4125398 D inner membrane protein yghb 4124727..4125398 Photorhabdus asymbiotica 8166012 YP_003042352.1 CDS dkgA NC_012962.1 4125658 4126527 D methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 4125658..4126527 Photorhabdus asymbiotica 8167567 YP_003042353.1 CDS PAU_03523 NC_012962.1 4126545 4126640 R hypothetical protein complement(4126545..4126640) Photorhabdus asymbiotica 8168626 YP_003042354.1 CDS sufI NC_012962.1 4126645 4128060 R repressor protein for FtsI complement(4126645..4128060) Photorhabdus asymbiotica 8166013 YP_003042355.1 CDS plsC NC_012962.1 4128558 4129310 R 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(4128558..4129310) Photorhabdus asymbiotica 8167693 YP_003042356.1 CDS parC NC_012962.1 4129458 4131704 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(4129458..4131704) Photorhabdus asymbiotica 8165653 YP_003042357.1 CDS parE NC_012962.1 4131747 4133642 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(4131747..4133642) Photorhabdus asymbiotica 8165642 YP_003042358.1 CDS yqiA NC_012962.1 4133715 4134326 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA complement(4133715..4134326) Photorhabdus asymbiotica 8165643 YP_003042359.1 CDS icc NC_012962.1 4134456 4135295 R cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(4134456..4135295) Photorhabdus asymbiotica 8169168 YP_003042360.1 CDS nudF NC_012962.1 4135395 4136036 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase NudF complement(4135395..4136036) Photorhabdus asymbiotica 8167347 YP_003042361.1 CDS tolC NC_012962.1 4136256 4137644 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 4136256..4137644 Photorhabdus asymbiotica 8166942 YP_003042362.1 CDS ygiB NC_012962.1 4138195 4138887 D hypothetical protein 4138195..4138887 Photorhabdus asymbiotica 8167518 YP_003042363.1 CDS ygiC NC_012962.1 4138894 4140054 D hypothetical protein 4138894..4140054 Photorhabdus asymbiotica 8167569 YP_003042364.1 CDS PAU_03534 NC_012962.1 4140174 4140329 D hypothetical protein 4140174..4140329 Photorhabdus asymbiotica 8167571 YP_003042365.1 CDS ygiD NC_012962.1 4140562 4141347 R seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein complement(4140562..4141347) Photorhabdus asymbiotica 8166014 YP_003042366.1 CDS ribB NC_012962.1 4141539 4142198 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(4141539..4142198) Photorhabdus asymbiotica 8167572 YP_003042367.1 CDS yqiC NC_012962.1 4142574 4142939 D hypothetical protein 4142574..4142939 Photorhabdus asymbiotica 8167014 YP_003042368.1 CDS PAU_03538 NC_012962.1 4143603 4145717 D hypothetical protein 4143603..4145717 Photorhabdus asymbiotica 8169169 YP_003042369.1 CDS PAU_03539 NC_012962.1 4145720 4147078 D hypothetical protein 4145720..4147078 Photorhabdus asymbiotica 8166015 YP_003042370.1 CDS PAU_03540 NC_012962.1 4147093 4148238 D hypothetical protein 4147093..4148238 Photorhabdus asymbiotica 8166016 YP_003042371.1 CDS PAU_03541 NC_012962.1 4148273 4149421 D hypothetical protein 4148273..4149421 Photorhabdus asymbiotica 8166017 YP_003042372.1 CDS PAU_03542 NC_012962.1 4149456 4150604 D hypothetical protein 4149456..4150604 Photorhabdus asymbiotica 8166018 YP_003042373.1 CDS PAU_03543 NC_012962.1 4150639 4151787 D hypothetical protein 4150639..4151787 Photorhabdus asymbiotica 8166019 YP_003042374.1 CDS PAU_03544 NC_012962.1 4151822 4152970 D hypothetical protein 4151822..4152970 Photorhabdus asymbiotica 8166020 YP_003042375.1 CDS PAU_03545 NC_012962.1 4152974 4153246 D hypothetical protein 4152974..4153246 Photorhabdus asymbiotica 8166021 YP_003042376.1 CDS PAU_03546 NC_012962.1 4154307 4154435 R hypothetical protein complement(4154307..4154435) Photorhabdus asymbiotica 8166022 YP_003042377.1 CDS hldE NC_012962.1 4154498 4155922 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(4154498..4155922) Photorhabdus asymbiotica 8166023 YP_003042378.1 CDS glnE NC_012962.1 4156018 4158861 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(4156018..4158861) Photorhabdus asymbiotica 8165819 YP_003042379.1 CDS ygiF NC_012962.1 4158878 4159828 R hypothetical protein complement(4158878..4159828) Photorhabdus asymbiotica 8167754 YP_003042380.1 CDS nfsA NC_012962.1 4160182 4160922 R subunit of oxygen-insensitive NADPH nitroreductase complement(4160182..4160922) Photorhabdus asymbiotica 8167573 YP_003042381.1 CDS ygiM NC_012962.1 4161377 4161997 D putative signal transduction protein 4161377..4161997 Photorhabdus asymbiotica 8166917 YP_003042382.1 CDS cca NC_012962.1 4162012 4163238 D catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 4162012..4163238 Photorhabdus asymbiotica 8167576 YP_003042383.1 CDS uppP NC_012962.1 4163334 4164152 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(4163334..4164152) Photorhabdus asymbiotica 8168544 YP_003042384.1 CDS folB NC_012962.1 4164331 4164684 R catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(4164331..4164684) Photorhabdus asymbiotica 8168411 YP_003042385.1 CDS ygiH NC_012962.1 4164789 4165430 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 4164789..4165430 Photorhabdus asymbiotica 8168143 YP_003042386.1 CDS gcp NC_012962.1 4165521 4166534 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(4165521..4166534) Photorhabdus asymbiotica 8167574 YP_003042387.1 CDS rpsU NC_012962.1 4166837 4167052 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 4166837..4167052 Photorhabdus asymbiotica 8168192 YP_003042388.1 CDS dnaG NC_012962.1 4167173 4168918 D synthesizes RNA primers at the replication forks; DNA primase 4167173..4168918 Photorhabdus asymbiotica 8167146 YP_003042389.1 CDS rpoD NC_012962.1 4168985 4170940 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 4168985..4170940 Photorhabdus asymbiotica 8168634 YP_003042390.1 CDS PAU_03560 NC_012962.1 4171016 4171792 R acetyltransferase, GNAT family protein complement(4171016..4171792) Photorhabdus asymbiotica 8164931 YP_003042391.1 CDS PAU_03561 NC_012962.1 4172114 4173277 R Phage integrase complement(4172114..4173277) Photorhabdus asymbiotica 8167015 YP_003042392.1 CDS PAU_03562 NC_012962.1 4173761 4174303 R hypothetical protein complement(4173761..4174303) Photorhabdus asymbiotica 8166025 YP_003042393.1 CDS gene0085 NC_012962.1 4174511 4174861 R glutamyl-tRNA(Gln) amidotransferase subunit B complement(4174511..4174861) Photorhabdus asymbiotica 8166026 YP_003042394.1 CDS gene0086 NC_012962.1 4174854 4175312 R hypothetical protein complement(4174854..4175312) Photorhabdus asymbiotica 8167701 YP_003042395.1 CDS gene0087 NC_012962.1 4175761 4176366 R putative pahge protein complement(4175761..4176366) Photorhabdus asymbiotica 8167702 YP_003042396.1 CDS gene0088 NC_012962.1 4176378 4177034 R hypothetical protein complement(4176378..4177034) Photorhabdus asymbiotica 8167703 YP_003042397.1 CDS gene0089 NC_012962.1 4177065 4177751 R hypothetical protein complement(4177065..4177751) Photorhabdus asymbiotica 8167704 YP_003042398.1 CDS PAU_03568 NC_012962.1 4178788 4179033 R hypothetical protein complement(4178788..4179033) Photorhabdus asymbiotica 8167705 YP_003042399.1 CDS PAU_03569 NC_012962.1 4179513 4179812 R hypothetical protein complement(4179513..4179812) Photorhabdus asymbiotica 8166027 YP_003042400.1 CDS PAU_03570 NC_012962.1 4179805 4180143 R hypothetical protein complement(4179805..4180143) Photorhabdus asymbiotica 8166028 YP_003042401.1 CDS PAU_03571 NC_012962.1 4180206 4180892 R hypothetical protein complement(4180206..4180892) Photorhabdus asymbiotica 8166029 YP_003042402.1 CDS cro NC_012962.1 4180975 4181199 D regulatory protein cro 4180975..4181199 Photorhabdus asymbiotica 8166030 YP_003042403.1 CDS cII NC_012962.1 4181323 4181664 D transcription activator protein c1 4181323..4181664 Photorhabdus asymbiotica 8169095 YP_003042404.1 CDS gene0090 NC_012962.1 4181770 4182582 D Phage replication protein O 4181770..4182582 Photorhabdus asymbiotica 8168572 YP_003042405.1 CDS gene0091 NC_012962.1 <4182588 4183277 D phage dna replication protein <4182588..4183277 Photorhabdus asymbiotica 8167706 YP_003042406.1 CDS gene0092 NC_012962.1 4183279 4183602 D hypothetical protein 4183279..4183602 Photorhabdus asymbiotica 8167707 YP_003042407.1 CDS gene0093 NC_012962.1 4183617 4184063 D hypothetical protein 4183617..4184063 Photorhabdus asymbiotica 8167708 YP_003042408.1 CDS gene0094 NC_012962.1 4184341 4184994 D Bacteriophage Lambda NinG 4184341..4184994 Photorhabdus asymbiotica 8167709 YP_003042409.1 CDS gene0095 NC_012962.1 4185144 4185668 D phage antiterminator q protein 4185144..4185668 Photorhabdus asymbiotica 8167710 YP_003042410.1 CDS gene0096 NC_012962.1 4186272 4186700 D phage holin 4186272..4186700 Photorhabdus asymbiotica 8167711 YP_003042411.1 CDS gene0097 NC_012962.1 4186687 4187112 D phage lysozyme 4186687..4187112 Photorhabdus asymbiotica 8167712 YP_003042412.1 CDS gene0098 NC_012962.1 4187034 4187558 D cryptic prophage endopeptidase b1362 4187034..4187558 Photorhabdus asymbiotica 8167713 YP_003042413.1 CDS gene0099 NC_012962.1 4187722 4188306 D hypothetical protein 4187722..4188306 Photorhabdus asymbiotica 8167714 YP_003042414.1 CDS gene0100 NC_012962.1 4188666 4189067 D bacteriophage protein 4188666..4189067 Photorhabdus asymbiotica 8167715 YP_003042415.1 CDS gene0101 NC_012962.1 4189064 4190299 D phage terminase large subunit 4189064..4190299 Photorhabdus asymbiotica 8167716 YP_003042416.1 CDS gene0102 NC_012962.1 4190292 4191662 D hypothetical protein 4190292..4191662 Photorhabdus asymbiotica 8167717 YP_003042417.1 CDS gene0103 NC_012962.1 4191571 4192434 D Phage putative head morphogenesis protein, SPP1 gp7 4191571..4192434 Photorhabdus asymbiotica 8167718 YP_003042418.1 CDS gene0104 NC_012962.1 4192395 4193597 D hypothetical protein 4192395..4193597 Photorhabdus asymbiotica 8167719 YP_003042419.1 CDS gene0105 NC_012962.1 4193600 4194085 D hypothetical protein 4193600..4194085 Photorhabdus asymbiotica 8167720 YP_003042420.1 CDS gene0106 NC_012962.1 4194088 4195047 D hypothetical protein 4194088..4195047 Photorhabdus asymbiotica 8167721 YP_003042421.1 CDS gene0107 NC_012962.1 4195421 4195891 D hypothetical protein 4195421..4195891 Photorhabdus asymbiotica 8167722 YP_003042422.1 CDS gene0108 NC_012962.1 4196134 4196634 D hypothetical protein 4196134..4196634 Photorhabdus asymbiotica 8167723 YP_003042423.1 CDS gene0109 NC_012962.1 4196638 4198149 D phage related protein 4196638..4198149 Photorhabdus asymbiotica 8167724 YP_003042424.1 CDS gene0110 NC_012962.1 4198168 4198605 D hypothetical protein 4198168..4198605 Photorhabdus asymbiotica 8167725 YP_003042425.1 CDS gene0111 NC_012962.1 4198602 4198997 D hypothetical protein 4198602..4198997 Photorhabdus asymbiotica 8167726 YP_003042426.1 CDS gene0112 NC_012962.1 4199142 4201049 D bacteriophage protein 4199142..4201049 Photorhabdus asymbiotica 8167727 YP_003042427.1 CDS gene0113 NC_012962.1 4201425 4202003 R hypothetical protein complement(4201425..4202003) Photorhabdus asymbiotica 8167728 YP_003042428.1 CDS gene0114 NC_012962.1 4202573 4202908 D hypothetical protein 4202573..4202908 Photorhabdus asymbiotica 8167729 YP_003042429.1 CDS gene0115 NC_012962.1 4203006 4203449 D hypothetical protein 4203006..4203449 Photorhabdus asymbiotica 8167730 YP_003042430.1 CDS gene0116 NC_012962.1 4203654 4204448 D hypothetical protein 4203654..4204448 Photorhabdus asymbiotica 8167731 YP_003042431.1 CDS gene0117 NC_012962.1 4204949 4205707 D putative bacteriophage protein 4204949..4205707 Photorhabdus asymbiotica 8167732 YP_003042432.1 CDS gene0118 NC_012962.1 4205707 4206045 D hypothetical protein 4205707..4206045 Photorhabdus asymbiotica 8167733 YP_003042433.1 CDS gene0119 NC_012962.1 4206020 4206865 D hypothetical protein 4206020..4206865 Photorhabdus asymbiotica 8167734 YP_003042434.1 CDS gene0120 NC_012962.1 4206840 4207511 D hypothetical protein 4206840..4207511 Photorhabdus asymbiotica 8167735 YP_003042435.1 CDS gene0121 NC_012962.1 4207508 4207870 D hypothetical protein 4207508..4207870 Photorhabdus asymbiotica 8167736 YP_003042436.1 CDS gene0122 NC_012962.1 4207818 4208978 D hypothetical protein 4207818..4208978 Photorhabdus asymbiotica 8167737 YP_003042437.1 CDS gene0123 NC_012962.1 4208971 4209627 D hypothetical protein 4208971..4209627 Photorhabdus asymbiotica 8167738 YP_003042438.1 CDS gene0124 NC_012962.1 4209614 4210972 D tail fiber protein 4209614..4210972 Photorhabdus asymbiotica 8167739 YP_003042439.1 CDS PAU_03609 NC_012962.1 4210972 4211598 D Putative bacteriophage tail fiber protein 4210972..4211598 Photorhabdus asymbiotica 8167740 YP_003042440.1 CDS PAU_03610 NC_012962.1 4211630 4212262 R hypothetical protein complement(4211630..4212262) Photorhabdus asymbiotica 8166031 YP_003042441.1 CDS PAU_03611 NC_012962.1 4212244 4213809 R Putative helicase complement(4212244..4213809) Photorhabdus asymbiotica 8166032 YP_003042442.1 CDS PAU_03612 NC_012962.1 4214572 4214772 R hypothetical protein complement(4214572..4214772) Photorhabdus asymbiotica 8166033 YP_003042443.1 CDS PAU_03613 NC_012962.1 4214775 4215374 R hypothetical protein complement(4214775..4215374) Photorhabdus asymbiotica 8166034 YP_003042444.1 CDS PAU_03614 NC_012962.1 4215581 4218853 D hypothetical protein 4215581..4218853 Photorhabdus asymbiotica 8166035 YP_003042445.1 CDS PAU_03615 NC_012962.1 4219916 4220236 D hypothetical protein 4219916..4220236 Photorhabdus asymbiotica 8166036 YP_003042446.1 CDS PAU_03616 NC_012962.1 4220287 4220583 D hypothetical protein 4220287..4220583 Photorhabdus asymbiotica 8166037 YP_003042447.1 CDS PAU_03617 NC_012962.1 4220670 4220849 R hypothetical protein complement(4220670..4220849) Photorhabdus asymbiotica 8166038 YP_003042448.1 CDS PAU_03618 NC_012962.1 4221005 4221481 D hypothetical protein 4221005..4221481 Photorhabdus asymbiotica 8166039 YP_003042449.1 CDS PAU_03619 NC_012962.1 4222289 4222444 R Putative phage-related protein complement(4222289..4222444) Photorhabdus asymbiotica 8166040 YP_003042450.1 CDS PAU_03620 NC_012962.1 4222663 4222797 D hypothetical protein 4222663..4222797 Photorhabdus asymbiotica 8166041 YP_003042451.1 CDS PAU_03621 NC_012962.1 4222932 4223876 R hypothetical protein complement(4222932..4223876) Photorhabdus asymbiotica 8166042 YP_003042452.1 CDS idi2 NC_012962.1 4224013 4224549 R isopentenyl-diphosphate delta-isomerase complement(4224013..4224549) Photorhabdus asymbiotica 8166043 YP_003042453.1 CDS PAU_03623 NC_012962.1 4225124 4226059 D hypothetical protein 4225124..4226059 Photorhabdus asymbiotica 8167353 YP_003042454.1 CDS PAU_03624 NC_012962.1 4226112 4226699 R hypothetical protein complement(4226112..4226699) Photorhabdus asymbiotica 8166044 YP_003042455.1 CDS fadH NC_012962.1 4227096 4229117 D 2,4-dienoyl-coa reductase [nadph] (2,4-dienoyl coenzyme a reductase) 4227096..4229117 Photorhabdus asymbiotica 8166045 YP_003042456.1 CDS ygjU NC_012962.1 4229247 4230500 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(4229247..4230500) Photorhabdus asymbiotica 8166503 YP_003042457.1 CDS alx NC_012962.1 4230786 4231745 R This family contains a number of integral membrane proteins including the TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions.; protein alx complement(4230786..4231745) Photorhabdus asymbiotica 8167579 YP_003042458.1 CDS PAU_03628 NC_012962.1 4232245 4232364 D hypothetical protein 4232245..4232364 Photorhabdus asymbiotica 8167016 YP_003042459.1 CDS yqjA NC_012962.1 4232432 4233103 D inner membrane protein yqja 4232432..4233103 Photorhabdus asymbiotica 8166046 YP_003042460.1 CDS PAU_03630 NC_012962.1 4233298 4233603 D membrane protein 4233298..4233603 Photorhabdus asymbiotica 8169170 YP_003042461.1 CDS PAU_03631 NC_012962.1 4233605 4234006 D membrane protein 4233605..4234006 Photorhabdus asymbiotica 8166047 YP_003042462.1 CDS PAU_03632 NC_012962.1 4233999 4234259 D hypothetical protein 4233999..4234259 Photorhabdus asymbiotica 8166048 YP_003042463.1 CDS PAU_03633 NC_012962.1 4234418 4234873 D membrane protein 4234418..4234873 Photorhabdus asymbiotica 8166049 YP_003042464.1 CDS yhaJ NC_012962.1 4235846 4236757 R LysR family transcriptional regulatory protein complement(4235846..4236757) Photorhabdus asymbiotica 8166050 YP_003042465.1 CDS PAU_03635 NC_012962.1 4236866 4237567 D hypothetical protein 4236866..4237567 Photorhabdus asymbiotica 8167581 YP_003042466.1 CDS PAU_03636 NC_012962.1 4237849 4238022 D hypothetical protein 4237849..4238022 Photorhabdus asymbiotica 8167017 YP_003042467.1 CDS PAU_03637 NC_012962.1 4238063 4238929 R hypothetical protein complement(4238063..4238929) Photorhabdus asymbiotica 8166052 YP_003042468.1 CDS PAU_03638 NC_012962.1 4238942 4240738 D hypothetical protein 4238942..4240738 Photorhabdus asymbiotica 8166053 YP_003042469.1 CDS PAU_03639 NC_012962.1 4240800 4241180 D hypothetical protein 4240800..4241180 Photorhabdus asymbiotica 8166054 YP_003042470.1 CDS diaA NC_012962.1 4241205 4241795 D Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 4241205..4241795 Photorhabdus asymbiotica 8166055 YP_003042471.1 CDS yraP NC_012962.1 4241806 4242381 D similar to unknown protein yrap of escherichia coli; hypothetical protein 4241806..4242381 Photorhabdus asymbiotica 8168618 YP_003042472.1 CDS mtgA NC_012962.1 4242500 4243237 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(4242500..4243237) Photorhabdus asymbiotica 8169176 YP_003042473.1 CDS elbB NC_012962.1 4243242 4243907 R isoprenoid biosynthesis protein with amidotransferase-like domain complement(4243242..4243907) Photorhabdus asymbiotica 8166391 YP_003042474.1 CDS arcB NC_012962.1 4244131 4246476 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB complement(4244131..4246476) Photorhabdus asymbiotica 8168669 YP_003042475.1 CDS PAU_03645 NC_012962.1 4246588 4246764 R hypothetical protein complement(4246588..4246764) Photorhabdus asymbiotica 8166794 YP_003042476.1 CDS PAU_03646 NC_012962.1 4247181 4247276 D hypothetical protein 4247181..4247276 Photorhabdus asymbiotica 8166056 YP_003042477.1 CDS gltB NC_012962.1 4247366 4251823 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 4247366..4251823 Photorhabdus asymbiotica 8166057 YP_003042478.1 CDS gltD NC_012962.1 4251833 4253251 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 4251833..4253251 Photorhabdus asymbiotica 8167769 YP_003042479.1 CDS PAU_03649 NC_012962.1 4253487 4253993 D hypothetical protein 4253487..4253993 Photorhabdus asymbiotica 8167770 YP_003042480.1 CDS sspB NC_012962.1 4254461 4254976 R SspB is encoded in an operon whose synthesis is stimulated by carbon, amino acid, and phosphate starvation.; ClpXP protease specificity-enhancing factor complement(4254461..4254976) Photorhabdus asymbiotica 8166058 YP_003042481.1 CDS sspA NC_012962.1 4254980 4255624 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(4254980..4255624) Photorhabdus asymbiotica 8167682 YP_003042482.1 CDS rpsI NC_012962.1 4255922 4256314 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(4255922..4256314) Photorhabdus asymbiotica 8167681 YP_003042483.1 CDS rplM NC_012962.1 4256330 4256758 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4256330..4256758) Photorhabdus asymbiotica 8167134 YP_003042484.1 CDS PAU_03654 NC_012962.1 4257010 4258131 R hypothetical protein complement(4257010..4258131) Photorhabdus asymbiotica 8164906 YP_003042485.1 CDS PAU_03655 NC_012962.1 4258352 4258756 D cytochrome d ubiquinol oxidase subunit III 4258352..4258756 Photorhabdus asymbiotica 8166059 YP_003042486.1 CDS degQ NC_012962.1 4259138 4260514 D serine endoprotease 4259138..4260514 Photorhabdus asymbiotica 8166060 YP_003042487.1 CDS ISPlu8C5 NC_012962.1 4261345 4262412 R transposase, IS630 family complement(4261345..4262412) Photorhabdus asymbiotica 8168609 YP_003042488.1 CDS degS NC_012962.1 4263527 4264588 D serine endoprotease 4263527..4264588 Photorhabdus asymbiotica 8165044 YP_003042489.1 CDS PAU_03659 NC_012962.1 4264755 4264883 D hypothetical protein 4264755..4264883 Photorhabdus asymbiotica 8168610 YP_003042490.1 CDS PAU_03660 NC_012962.1 4265079 4266437 D hypothetical protein 4265079..4266437 Photorhabdus asymbiotica 8166061 YP_003042491.1 CDS PAU_03661 NC_012962.1 4266453 4267598 D hypothetical protein 4266453..4267598 Photorhabdus asymbiotica 8166062 YP_003042492.1 CDS PAU_03662 NC_012962.1 4267635 4268780 D hypothetical protein 4267635..4268780 Photorhabdus asymbiotica 8165019 YP_003042493.1 CDS PAU_03663 NC_012962.1 4268817 4269962 D hypothetical protein 4268817..4269962 Photorhabdus asymbiotica 8167777 YP_003042494.1 CDS PAU_03664 NC_012962.1 4269999 4271144 D hypothetical protein 4269999..4271144 Photorhabdus asymbiotica 8167778 YP_003042495.1 CDS murA NC_012962.1 4271380 4272633 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(4271380..4272633) Photorhabdus asymbiotica 8167779 YP_003042496.1 CDS yrbA NC_012962.1 4272685 4272939 R transcriptional regulator protein yrba complement(4272685..4272939) Photorhabdus asymbiotica 8164852 YP_003042497.1 CDS PAU_03667 NC_012962.1 4273121 4273261 D hypothetical protein 4273121..4273261 Photorhabdus asymbiotica 8169177 YP_003042498.1 CDS PAU_03668 NC_012962.1 4273302 4273595 R hypothetical protein complement(4273302..4273595) Photorhabdus asymbiotica 8167780 YP_003042499.1 CDS PAU_03669 NC_012962.1 4273597 4274226 R hypothetical protein complement(4273597..4274226) Photorhabdus asymbiotica 8167781 YP_003042500.1 CDS PAU_03670 NC_012962.1 4274250 4274768 R hypothetical protein complement(4274250..4274768) Photorhabdus asymbiotica 8167782 YP_003042501.1 CDS PAU_03671 NC_012962.1 4274773 4275561 R hypothetical protein complement(4274773..4275561) Photorhabdus asymbiotica 8167783 YP_003042502.1 CDS yrbF NC_012962.1 4275566 4276369 R ATP-binding subunit of a putative ABC toluene efflux transporter; putative ABC transporter ATP-binding protein YrbF complement(4275566..4276369) Photorhabdus asymbiotica 8167784 YP_003042503.1 CDS yrbG NC_012962.1 4276597 4277571 D YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; putative calcium/sodium:proton antiporter 4276597..4277571 Photorhabdus asymbiotica 8169178 YP_003042504.1 CDS kdsD NC_012962.1 4277595 4278563 D D-arabinose 5-phosphate isomerase 4277595..4278563 Photorhabdus asymbiotica 8169179 YP_003042505.1 CDS kdsC NC_012962.1 4278581 4279144 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4278581..4279144 Photorhabdus asymbiotica 8165060 YP_003042506.1 CDS PAU_03676 NC_012962.1 4279162 4279740 D hypothetical protein 4279162..4279740 Photorhabdus asymbiotica 8165059 YP_003042507.1 CDS yhbN NC_012962.1 4279721 4280254 D LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; lipopolysaccharide transport periplasmic protein LptA 4279721..4280254 Photorhabdus asymbiotica 8167785 YP_003042508.1 CDS yhbG NC_012962.1 4280263 4280988 D putative ABC transporter ATP-binding protein YhbG 4280263..4280988 Photorhabdus asymbiotica 8167586 YP_003042509.1 CDS rpoN NC_012962.1 4281016 4282455 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 4281016..4282455 Photorhabdus asymbiotica 8167584 YP_003042510.1 CDS yhbH NC_012962.1 4282479 4282766 D probable sigma(54) modulation protein (orf3) (orf95) 4282479..4282766 Photorhabdus asymbiotica 8164934 YP_003042511.1 CDS ptsN NC_012962.1 4282912 4283379 D PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 4282912..4283379 Photorhabdus asymbiotica 8167585 YP_003042512.1 CDS PAU_03682 NC_012962.1 4283455 4284306 D hypothetical protein 4283455..4284306 Photorhabdus asymbiotica 8168350 YP_003042513.1 CDS ptsO NC_012962.1 4284306 4284578 D phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 4284306..4284578 Photorhabdus asymbiotica 8167786 YP_003042514.1 CDS rnk NC_012962.1 4284768 4285178 D Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 4284768..4285178 Photorhabdus asymbiotica 8168351 YP_003042515.1 CDS PAU_03685 NC_012962.1 4285227 4285526 D hypothetical protein 4285227..4285526 Photorhabdus asymbiotica 8164883 YP_003042516.1 CDS PAU_03686 NC_012962.1 4286077 4286553 R hypothetical protein complement(4286077..4286553) Photorhabdus asymbiotica 8167787 YP_003042517.1 CDS PAU_03687 NC_012962.1 4286842 4287006 R Putative phage-related protein complement(4286842..4287006) Photorhabdus asymbiotica 8167788 YP_003042518.1 CDS PAU_03688 NC_012962.1 4287031 4287624 R Putative phage-related protein complement(4287031..4287624) Photorhabdus asymbiotica 8167789 YP_003042519.1 CDS PAU_03689 NC_012962.1 4287618 4287917 R Putative phage-related protein complement(4287618..4287917) Photorhabdus asymbiotica 8167790 YP_003042520.1 CDS yhbX NC_012962.1 4288466 4290007 D outer membrane protein yhbx 4288466..4290007 Photorhabdus asymbiotica 8167791 YP_003042521.1 CDS map NC_012962.1 4290511 4291287 D methionine aminopeptidase 4290511..4291287 Photorhabdus asymbiotica 8167592 YP_003042522.1 CDS pmbA NC_012962.1 4291334 4292674 R protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA complement(4291334..4292674) Photorhabdus asymbiotica 8168963 YP_003042523.1 CDS yjgA NC_012962.1 4292876 4293415 D hypothetical protein 4292876..4293415 Photorhabdus asymbiotica 8168282 YP_003042524.1 CDS PAU_03694 NC_012962.1 4293570 4293839 R hypothetical protein complement(4293570..4293839) Photorhabdus asymbiotica 8164979 YP_003042525.1 CDS PAU_03695 NC_012962.1 4293844 4294323 R putative ribonuclease complement(4293844..4294323) Photorhabdus asymbiotica 8167792 YP_003042526.1 CDS tldD NC_012962.1 4294366 4295811 R responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD complement(4294366..4295811) Photorhabdus asymbiotica 8167793 YP_003042527.1 CDS PAU_03697 NC_012962.1 4295824 4296675 R carbon-nitrogen hydrolase complement(4295824..4296675) Photorhabdus asymbiotica 8167512 YP_003042528.1 CDS PAU_03698 NC_012962.1 4296672 4300484 R hypothetical protein complement(4296672..4300484) Photorhabdus asymbiotica 8167794 YP_003042529.1 CDS cafA NC_012962.1 4300529 4301998 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(4300529..4301998) Photorhabdus asymbiotica 8167795 YP_003042530.1 CDS yhdE NC_012962.1 4301995 4302582 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(4301995..4302582) Photorhabdus asymbiotica 8168527 YP_003042531.1 CDS mreD NC_012962.1 4302971 4303459 R part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD complement(4302971..4303459) Photorhabdus asymbiotica 8167595 YP_003042532.1 CDS mreC NC_012962.1 4303459 4304493 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(4303459..4304493) Photorhabdus asymbiotica 8166366 YP_003042533.1 CDS mreB NC_012962.1 4304605 4305708 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(4304605..4305708) Photorhabdus asymbiotica 8166365 YP_003042534.1 CDS yhdH NC_012962.1 4306405 4307382 D putative dehydrogenase 4306405..4307382 Photorhabdus asymbiotica 8166364 YP_003042535.1 CDS aroQ NC_012962.1 4307593 4308045 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 4307593..4308045 Photorhabdus asymbiotica 8167596 YP_003042536.1 CDS accB NC_012962.1 4308075 4308545 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 4308075..4308545 Photorhabdus asymbiotica 8165507 YP_003042537.1 CDS accC NC_012962.1 4308558 4309907 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 4308558..4309907 Photorhabdus asymbiotica 8165263 YP_003042538.1 CDS PAU_03708 NC_012962.1 4310163 4310336 D hypothetical protein 4310163..4310336 Photorhabdus asymbiotica 8166313 YP_003042539.1 CDS PAU_03709 NC_012962.1 4310367 4311554 R catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase complement(4310367..4311554) Photorhabdus asymbiotica 8167796 YP_003042540.1 CDS PAU_03710 NC_012962.1 4312043 4312285 D hypothetical protein 4312043..4312285 Photorhabdus asymbiotica 8167797 YP_003042541.1 CDS panF NC_012962.1 4312275 4313720 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 4312275..4313720 Photorhabdus asymbiotica 8167798 YP_003042542.1 CDS prmA NC_012962.1 4313762 4314652 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 4313762..4314652 Photorhabdus asymbiotica 8165638 YP_003042543.1 CDS dusB NC_012962.1 4314916 4315902 D tRNA-dihydrouridine synthase B 4314916..4315902 Photorhabdus asymbiotica 8168316 YP_003042544.1 CDS fis NC_012962.1 4315928 4316224 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 4315928..4316224 Photorhabdus asymbiotica 8168657 YP_003042545.1 CDS PAU_03715 NC_012962.1 4316396 4317559 R The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients; multidrug resistance protein complement(4316396..4317559) Photorhabdus asymbiotica 8166541 YP_003042546.1 CDS PAU_03716 NC_012962.1 4317662 4318441 D AraC/XylS familytranscription regulator 4317662..4318441 Photorhabdus asymbiotica 8167799 YP_003042547.1 CDS PirB NC_012962.1 4318762 4320021 R This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins they are activated by proteolytic cleavage. The N-terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated toxin is composed of three distinct domains: an N-terminal helical bundle domain involved in membrane insertion and pore formation; a beta-sheet domain involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel , . This entry represents the conserved N-terminal domain.; hypothetical protein complement(4318762..4320021) Photorhabdus asymbiotica 8167800 YP_003042548.1 CDS pirA NC_012962.1 4320176 4320577 R hypothetical protein complement(4320176..4320577) Photorhabdus asymbiotica 8168756 YP_003042549.1 CDS livF NC_012962.1 4321674 4322375 R with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(4321674..4322375) Photorhabdus asymbiotica 8168755 YP_003042550.1 CDS livG NC_012962.1 4322378 4323151 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(4322378..4323151) Photorhabdus asymbiotica 8165085 YP_003042551.1 CDS livM NC_012962.1 4323148 4324434 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(4323148..4324434) Photorhabdus asymbiotica 8165086 YP_003042552.1 CDS livH NC_012962.1 4324431 4325357 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH complement(4324431..4325357) Photorhabdus asymbiotica 8165089 YP_003042553.1 CDS livK NC_012962.1 4325420 4326532 R leucine-specific binding protein livk complement(4325420..4326532) Photorhabdus asymbiotica 8165087 YP_003042554.1 CDS PAU_03724 NC_012962.1 4327047 4327445 D hypothetical protein 4327047..4327445 Photorhabdus asymbiotica 8165088 YP_003042555.1 CDS garK NC_012962.1 4327433 4328572 R glycerate kinase 2 complement(4327433..4328572) Photorhabdus asymbiotica 8167801 YP_003042556.1 CDS rpoH NC_012962.1 4328673 4329530 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(4328673..4329530) Photorhabdus asymbiotica 8168189 YP_003042557.1 CDS ftsX NC_012962.1 4330070 4331044 R putative ABC transporter, membrane protein; cell division protein FtsX complement(4330070..4331044) Photorhabdus asymbiotica 8164933 YP_003042558.1 CDS ftsE NC_012962.1 4331037 4331702 R putative ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division protein FtsE complement(4331037..4331702) Photorhabdus asymbiotica 8168170 YP_003042559.1 CDS ftsY NC_012962.1 4331709 4333193 R cell division protein ftsy complement(4331709..4333193) Photorhabdus asymbiotica 8168163 YP_003042560.1 CDS rsmD NC_012962.1 4333423 4334007 D catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 4333423..4334007 Photorhabdus asymbiotica 8168171 YP_003042561.1 CDS PAU_03731 NC_012962.1 4334029 4334292 D hypothetical protein 4334029..4334292 Photorhabdus asymbiotica 8167802 YP_003042562.1 CDS pmrB NC_012962.1 4334412 4335602 R putative multidrug-efflux transporter; hypothetical protein complement(4334412..4335602) Photorhabdus asymbiotica 8167803 YP_003042563.1 CDS zntA NC_012962.1 4336301 4338574 D P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 4336301..4338574 Photorhabdus asymbiotica 8168283 YP_003042564.1 CDS PAU_03734 NC_012962.1 4338789 4339031 D hypothetical protein 4338789..4339031 Photorhabdus asymbiotica 8169194 YP_003042565.1 CDS PAU_03735 NC_012962.1 4339024 4339308 D hypothetical protein 4339024..4339308 Photorhabdus asymbiotica 8167804 YP_003042566.1 CDS tusA NC_012962.1 4339392 4339640 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(4339392..4339640) Photorhabdus asymbiotica 8167805 YP_003042567.1 CDS PAU_03737 NC_012962.1 4339827 4340495 D hypothetical protein 4339827..4340495 Photorhabdus asymbiotica 8168379 YP_003042568.1 CDS gldA NC_012962.1 4340742 4341842 D forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 4340742..4341842 Photorhabdus asymbiotica 8167806 YP_003042569.1 CDS PAU_03739 NC_012962.1 4341941 4342372 R hypothetical protein complement(4341941..4342372) Photorhabdus asymbiotica 8167746 YP_003042570.1 CDS PAU_03740 NC_012962.1 4342603 4343034 R hypothetical protein complement(4342603..4343034) Photorhabdus asymbiotica 8167807 YP_003042571.1 CDS glpT NC_012962.1 4343653 4345002 D catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 4343653..4345002 Photorhabdus asymbiotica 8167808 YP_003042572.1 CDS glpQ NC_012962.1 4345138 4346214 D hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 4345138..4346214 Photorhabdus asymbiotica 8167767 YP_003042573.1 CDS poxA NC_012962.1 4346258 4347286 R lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase complement(4346258..4347286) Photorhabdus asymbiotica 8167765 YP_003042574.1 CDS PAU_03744 NC_012962.1 4347475 4347888 R hypothetical protein complement(4347475..4347888) Photorhabdus asymbiotica 8168290 YP_003042575.1 CDS PAU_03745 NC_012962.1 4348580 4348828 R hypothetical protein complement(4348580..4348828) Photorhabdus asymbiotica 8167809 YP_003042576.1 CDS PAU_03746 NC_012962.1 4349343 4349762 R hypothetical protein complement(4349343..4349762) Photorhabdus asymbiotica 8167810 YP_003042577.1 CDS PAU_03747 NC_012962.1 4350121 4350534 R hypothetical protein complement(4350121..4350534) Photorhabdus asymbiotica 8167811 YP_003042578.1 CDS frdA NC_012962.1 4351439 4353235 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 4351439..4353235 Photorhabdus asymbiotica 8167812 YP_003042579.1 CDS frdB NC_012962.1 4353228 4353962 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 4353228..4353962 Photorhabdus asymbiotica 8168151 YP_003042580.1 CDS frdC NC_012962.1 4353978 4354370 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 4353978..4354370 Photorhabdus asymbiotica 8168152 YP_003042581.1 CDS frdD NC_012962.1 4354387 4354740 D in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 4354387..4354740 Photorhabdus asymbiotica 8168153 YP_003042582.1 CDS sugE NC_012962.1 4354873 4355187 R member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; quaternary ammonium compound-resistance protein SugE complement(4354873..4355187) Photorhabdus asymbiotica 8168154 YP_003042583.1 CDS efp NC_012962.1 4355429 4355995 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(4355429..4355995) Photorhabdus asymbiotica 8167695 YP_003042584.1 CDS PAU_03754 NC_012962.1 4356034 4357062 D hypothetical protein 4356034..4357062 Photorhabdus asymbiotica 8168665 YP_003042585.1 CDS PAU_03755 NC_012962.1 4357123 4357464 R hypothetical protein complement(4357123..4357464) Photorhabdus asymbiotica 8167813 YP_003042586.1 CDS groL NC_012962.1 4358163 4359809 R 60 kda chaperonin (protein cpn60) (groel protein) complement(4358163..4359809) Photorhabdus asymbiotica 8167814 YP_003042587.1 CDS groES NC_012962.1 4359874 4360167 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(4359874..4360167) Photorhabdus asymbiotica 8169265 YP_003042588.1 CDS fxsA NC_012962.1 4360356 4360844 R fxsa protein (suppressor of f exclusion of phage t7) complement(4360356..4360844) Photorhabdus asymbiotica 8169266 YP_003042589.1 CDS PAU_03759 NC_012962.1 4360926 4361111 R hypothetical protein complement(4360926..4361111) Photorhabdus asymbiotica 8168181 YP_003042590.1 CDS aspA NC_012962.1 4361224 4362648 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4361224..4362648 Photorhabdus asymbiotica 8167815 YP_003042591.1 CDS dcuA NC_012962.1 4363708 4365009 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 4363708..4365009 Photorhabdus asymbiotica 8165521 YP_003042592.1 CDS dipZ NC_012962.1 4365191 4366918 D two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein precursor 4365191..4366918 Photorhabdus asymbiotica 8168602 YP_003042593.1 CDS PAU_03764 NC_012962.1 4366935 4367507 D putative transcriptional regulator 4366935..4367507 Photorhabdus asymbiotica 8168651 YP_003042594.1 CDS PAU_03765 NC_012962.1 4367624 4367731 D hypothetical protein 4367624..4367731 Photorhabdus asymbiotica 8167816 YP_003042595.1 CDS PAU_03766 NC_012962.1 4368433 4368984 D Transposase 4368433..4368984 Photorhabdus asymbiotica 8167817 YP_003042596.1 CDS PAU_03767 NC_012962.1 4369551 4370159 D hypothetical protein 4369551..4370159 Photorhabdus asymbiotica 8167818 YP_003042597.1 CDS PAU_03768 NC_012962.1 4370183 4370974 D hypothetical protein 4370183..4370974 Photorhabdus asymbiotica 8167819 YP_003042598.1 CDS PAU_03769 NC_012962.1 4370967 4371797 D hypothetical protein 4370967..4371797 Photorhabdus asymbiotica 8167820 YP_003042599.1 CDS PAU_03770 NC_012962.1 4371893 4372567 D hypothetical protein 4371893..4372567 Photorhabdus asymbiotica 8167821 YP_003042600.1 CDS PAU_03771 NC_012962.1 4372641 4373051 D carboxymuconolactone decarboxylase family protein 4372641..4373051 Photorhabdus asymbiotica 8167822 YP_003042601.1 CDS yqeF NC_012962.1 4373048 4374226 D probable acetyl-CoA acetyltransferase 4373048..4374226 Photorhabdus asymbiotica 8167823 YP_003042602.1 CDS PAU_03773 NC_012962.1 4374311 4374703 R putative transposase tnpb of insertion sequence is609 complement(4374311..4374703) Photorhabdus asymbiotica 8169166 YP_003042603.1 CDS PAU_03774 NC_012962.1 4374832 4375149 D putative is element transposase 4374832..4375149 Photorhabdus asymbiotica 8167824 YP_003042604.1 CDS yyaM NC_012962.1 4375446 4376369 R hypothetical protein complement(4375446..4376369) Photorhabdus asymbiotica 8167825 YP_003042605.1 CDS PAU_03776 NC_012962.1 4376380 4377105 R short-chain dehydrogenase/reductase sdr complement(4376380..4377105) Photorhabdus asymbiotica 8169192 YP_003042606.1 CDS PAU_03777 NC_012962.1 4377392 4378357 D lysr-family transcriptional regulator 4377392..4378357 Photorhabdus asymbiotica 8167826 YP_003042607.1 CDS cbeR NC_012962.1 4378571 4379485 R lysr-type transcriptional regulatory protein complement(4378571..4379485) Photorhabdus asymbiotica 8167827 YP_003042608.1 CDS PAU_03779 NC_012962.1 4381048 4382091 R hypothetical protein complement(4381048..4382091) Photorhabdus asymbiotica 8168531 YP_003042609.1 CDS PAU_03780 NC_012962.1 4382275 4383378 R similar to toxic ion resistance protein; hypothetical protein complement(4382275..4383378) Photorhabdus asymbiotica 8167828 YP_003042610.1 CDS PAU_03781 NC_012962.1 4383790 4384425 R putative two-component response regulator complement(4383790..4384425) Photorhabdus asymbiotica 8167829 YP_003042611.1 CDS PAU_03782 NC_012962.1 4384427 4387228 R two-component sensor/regulator precursor complement(4384427..4387228) Photorhabdus asymbiotica 8167830 YP_003042612.1 CDS PAU_03783 NC_012962.1 4387661 4390435 R putative invasin; hypothetical protein complement(4387661..4390435) Photorhabdus asymbiotica 8167831 YP_003042613.1 CDS PAU_03784 NC_012962.1 4390760 4391152 D hypothetical protein 4390760..4391152 Photorhabdus asymbiotica 8167832 YP_003042614.1 CDS PAU_03785 NC_012962.1 4391166 4391696 D hypothetical protein 4391166..4391696 Photorhabdus asymbiotica 8167833 YP_003042615.1 CDS PAU_03786 NC_012962.1 4391722 4393071 D hypothetical protein 4391722..4393071 Photorhabdus asymbiotica 8167834 YP_003042616.1 CDS PAU_03787 NC_012962.1 4393068 4394231 D Most of the bacterial outer membrane proteins in this group are porin-like integral membrane proteins; outer membrane protein, ompa/motb family 4393068..4394231 Photorhabdus asymbiotica 8167835 YP_003042617.1 CDS PAU_03788 NC_012962.1 4394248 4397805 D hypothetical protein 4394248..4397805 Photorhabdus asymbiotica 8167836 YP_003042618.1 CDS PAU_03789 NC_012962.1 4397816 4398823 D hypothetical protein 4397816..4398823 Photorhabdus asymbiotica 8167837 YP_003042619.1 CDS PAU_03790 NC_012962.1 4398923 4399480 D hypothetical protein 4398923..4399480 Photorhabdus asymbiotica 8167838 YP_003042620.1 CDS PAU_03791 NC_012962.1 4399467 4400975 D hypothetical protein 4399467..4400975 Photorhabdus asymbiotica 8167839 YP_003042621.1 CDS PAU_03792 NC_012962.1 4401008 4401529 D hypothetical protein 4401008..4401529 Photorhabdus asymbiotica 8167840 YP_003042622.1 CDS PAU_03793 NC_012962.1 4401671 4402666 D putative fha-family protein; hypothetical protein 4401671..4402666 Photorhabdus asymbiotica 8167841 YP_003042623.1 CDS PAU_03794 NC_012962.1 4403251 4404222 R Putative Transposase complement(4403251..4404222) Photorhabdus asymbiotica 8167842 YP_003042624.1 CDS PAU_03795 NC_012962.1 4404711 4405106 R Putative Transposase complement(4404711..4405106) Photorhabdus asymbiotica 8167843 YP_003042625.1 CDS PAU_03796 NC_012962.1 4405715 4405867 D hypothetical protein 4405715..4405867 Photorhabdus asymbiotica 8167844 YP_003042626.1 CDS PAU_03797 NC_012962.1 4406267 4406539 R relb antitoxin complement(4406267..4406539) Photorhabdus asymbiotica 8167845 YP_003042627.1 CDS PAU_03798 NC_012962.1 4406762 4409386 R hypothetical protein complement(4406762..4409386) Photorhabdus asymbiotica 8167846 YP_003042628.1 CDS PAU_03799 NC_012962.1 4409439 4410530 R hypothetical protein complement(4409439..4410530) Photorhabdus asymbiotica 8167847 YP_003042629.1 CDS PAU_03800 NC_012962.1 4410527 4412395 R hypothetical protein complement(4410527..4412395) Photorhabdus asymbiotica 8167848 YP_003042630.1 CDS PAU_03801 NC_012962.1 4412399 4412935 R hypothetical protein complement(4412399..4412935) Photorhabdus asymbiotica 8167849 YP_003042631.1 CDS PAU_03802 NC_012962.1 4412936 4413571 R hypothetical protein complement(4412936..4413571) Photorhabdus asymbiotica 8167850 YP_003042632.1 CDS PAU_03803 NC_012962.1 4413616 4414674 R hypothetical protein complement(4413616..4414674) Photorhabdus asymbiotica 8167851 YP_003042633.1 CDS PAU_03804 NC_012962.1 4414671 4417217 R hypothetical protein complement(4414671..4417217) Photorhabdus asymbiotica 8167852 YP_003042634.1 CDS PAU_03805 NC_012962.1 4417242 4419743 R hypothetical protein complement(4417242..4419743) Photorhabdus asymbiotica 8167853 YP_003042635.1 CDS PAU_03806 NC_012962.1 4420026 4420232 D hypothetical protein 4420026..4420232 Photorhabdus asymbiotica 8167854 YP_003042636.1 CDS PAU_03807 NC_012962.1 4420370 4420816 D putative two-component response regulator 4420370..4420816 Photorhabdus asymbiotica 8167855 YP_003042637.1 CDS PAU_03808 NC_012962.1 4421186 4422109 R hypothetical protein complement(4421186..4422109) Photorhabdus asymbiotica 8167856 YP_003042638.1 CDS PAU_03809 NC_012962.1 4422106 4423377 R hypothetical protein complement(4422106..4423377) Photorhabdus asymbiotica 8167857 YP_003042639.1 CDS PAU_03810 NC_012962.1 4423407 4425812 R hypothetical protein complement(4423407..4425812) Photorhabdus asymbiotica 8167046 YP_003042640.1 CDS PAU_03811 NC_012962.1 4425814 4426944 R hypothetical protein complement(4425814..4426944) Photorhabdus asymbiotica 8168029 YP_003042641.1 CDS PAU_03812 NC_012962.1 4428702 4429046 D hypothetical protein 4428702..4429046 Photorhabdus asymbiotica 8168030 YP_003042642.1 CDS PAU_03813 NC_012962.1 4429208 4429495 R hypothetical protein complement(4429208..4429495) Photorhabdus asymbiotica 8168031 YP_003042643.1 CDS PAU_03814 NC_012962.1 4429950 4431320 R hypothetical protein complement(4429950..4431320) Photorhabdus asymbiotica 8168032 YP_003042644.1 CDS PAU_03815 NC_012962.1 4431575 4432009 R hypothetical protein complement(4431575..4432009) Photorhabdus asymbiotica 8168033 YP_003042645.1 CDS PAU_03816 NC_012962.1 4432013 >4432486 R hypothetical protein complement(4432013..>4432486) Photorhabdus asymbiotica 8168034 YP_003042646.1 CDS PAU_03817 NC_012962.1 4432530 4433561 R hypothetical protein complement(4432530..4433561) Photorhabdus asymbiotica 8168035 YP_003042647.1 CDS PAU_03818 NC_012962.1 4433561 4435321 R hypothetical protein complement(4433561..4435321) Photorhabdus asymbiotica 8168036 YP_003042648.1 CDS PAU_03819 NC_012962.1 4435406 4437007 R hypothetical protein complement(4435406..4437007) Photorhabdus asymbiotica 8168037 YP_003042649.1 CDS PAU_03820 NC_012962.1 4437011 4440307 R hypothetical protein complement(4437011..4440307) Photorhabdus asymbiotica 8168038 YP_003042650.1 CDS PAU_03821 NC_012962.1 4440300 4441475 R hypothetical protein complement(4440300..4441475) Photorhabdus asymbiotica 8168039 YP_003042651.1 CDS PAU_03822 NC_012962.1 4441481 4441753 R hypothetical protein complement(4441481..4441753) Photorhabdus asymbiotica 8168040 YP_003042652.1 CDS PAU_03823 NC_012962.1 4441788 4442549 R putative membrane protein precursor complement(4441788..4442549) Photorhabdus asymbiotica 8168041 YP_003042653.1 CDS PAU_03824 NC_012962.1 4442745 4443734 R hypothetical protein complement(4442745..4443734) Photorhabdus asymbiotica 8168042 YP_003042654.1 CDS PAU_03825 NC_012962.1 4443932 4444690 R putative membrane protein precursor complement(4443932..4444690) Photorhabdus asymbiotica 8168043 YP_003042655.1 CDS PAU_03826 NC_012962.1 4444888 4445883 R hypothetical protein complement(4444888..4445883) Photorhabdus asymbiotica 8168044 YP_003042656.1 CDS PAU_03827 NC_012962.1 4445962 4446963 R hypothetical protein complement(4445962..4446963) Photorhabdus asymbiotica 8168045 YP_003042657.1 CDS PAU_03828 NC_012962.1 4447042 4448043 R hypothetical protein complement(4447042..4448043) Photorhabdus asymbiotica 8168046 YP_003042658.1 CDS PAU_03829 NC_012962.1 4448040 4450646 R hypothetical protein complement(4448040..4450646) Photorhabdus asymbiotica 8168047 YP_003042659.1 CDS PAU_03830 NC_012962.1 4450646 4451686 R hypothetical protein complement(4450646..4451686) Photorhabdus asymbiotica 8168048 YP_003042660.1 CDS PAU_03831 NC_012962.1 4451697 4454069 R hypothetical protein complement(4451697..4454069) Photorhabdus asymbiotica 8168049 YP_003042661.1 CDS PAU_03832 NC_012962.1 4454078 4456756 R ClpA/B-type chaperone complement(4454078..4456756) Photorhabdus asymbiotica 8168050 YP_003042662.1 CDS PAU_03833 NC_012962.1 4456998 4457489 R hypothetical protein complement(4456998..4457489) Photorhabdus asymbiotica 8168051 YP_003042663.1 CDS PAU_03834 NC_012962.1 4457494 4459227 R hypothetical protein complement(4457494..4459227) Photorhabdus asymbiotica 8168052 YP_003042664.1 CDS PAU_03835 NC_012962.1 4459238 4459888 R hypothetical protein complement(4459238..4459888) Photorhabdus asymbiotica 8168053 YP_003042665.1 CDS PAU_03836 NC_012962.1 4459885 4461246 R hypothetical protein complement(4459885..4461246) Photorhabdus asymbiotica 8168054 YP_003042666.1 CDS PAU_03837 NC_012962.1 4461263 4462789 R hypothetical protein complement(4461263..4462789) Photorhabdus asymbiotica 8168055 YP_003042667.1 CDS PAU_03838 NC_012962.1 4462838 4463335 R hypothetical protein complement(4462838..4463335) Photorhabdus asymbiotica 8168056 YP_003042668.1 CDS PAU_03839 NC_012962.1 4463539 4463688 R hypothetical protein complement(4463539..4463688) Photorhabdus asymbiotica 8168057 YP_003042669.1 CDS PAU_03840 NC_012962.1 4464073 4464513 R hypothetical protein complement(4464073..4464513) Photorhabdus asymbiotica 8168058 YP_003042670.1 CDS PAU_03841 NC_012962.1 4464744 4465949 R putative transmembrane protein complement(4464744..4465949) Photorhabdus asymbiotica 8168059 YP_003042671.1 CDS ydcM NC_012962.1 4466275 4466787 D putative is element transposase 4466275..4466787 Photorhabdus asymbiotica 8168060 YP_003042672.1 CDS PAU_03843 NC_012962.1 4466931 4468379 D monooxygenase-like protein 4466931..4468379 Photorhabdus asymbiotica 8165420 YP_003042673.1 CDS PAU_03844 NC_012962.1 4468444 4470567 R putative peptidase; hypothetical protein complement(4468444..4470567) Photorhabdus asymbiotica 8168061 YP_003042674.1 CDS PAU_03845 NC_012962.1 4471225 4471791 R This family contains integral membrane proteins that are related to Drosophila rhomboid protein . Members of this family are found in archaea, bacteria and eukaryotes. Analysis suggests that Rhomboid-1 is a novel intramembrane serine protease that directly cleaves the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor; hypothetical protein complement(4471225..4471791) Photorhabdus asymbiotica 8168062 YP_003042675.1 CDS PAU_03846 NC_012962.1 4472811 4473833 D Photopexin AB; photopexin a/b-like protein 4472811..4473833 Photorhabdus asymbiotica 8168063 YP_003042676.1 CDS PAU_03847 NC_012962.1 4474242 4474850 D hypothetical protein 4474242..4474850 Photorhabdus asymbiotica 8168064 YP_003042677.1 CDS PAU_03848 NC_012962.1 4475364 4475468 D hypothetical protein 4475364..4475468 Photorhabdus asymbiotica 8168065 YP_003042678.1 CDS PAU_03849 NC_012962.1 4475526 4479992 D Insecticial toxin complex 4475526..4479992 Photorhabdus asymbiotica 8168066 YP_003042679.1 CDS PAU_03850 NC_012962.1 4480071 4482932 D Insecticial toxin complex 4480071..4482932 Photorhabdus asymbiotica 8168067 YP_003042680.1 CDS PAU_03851 NC_012962.1 4483037 4484629 R Insecticial toxin complex complement(4483037..4484629) Photorhabdus asymbiotica 8168068 YP_003042681.1 CDS ydhO NC_012962.1 4485617 4485829 D hypothetical protein 4485617..4485829 Photorhabdus asymbiotica 8168069 YP_003042682.1 CDS PAU_03853 NC_012962.1 4486003 4486671 R hypothetical protein complement(4486003..4486671) Photorhabdus asymbiotica 8165434 YP_003042683.1 CDS PAU_03854 NC_012962.1 4487106 4488089 D hypothetical protein 4487106..4488089 Photorhabdus asymbiotica 8168070 YP_003042684.1 CDS PAU_03855 NC_012962.1 4488090 4489235 D hypothetical protein 4488090..4489235 Photorhabdus asymbiotica 8168071 YP_003042685.1 CDS PAU_03856 NC_012962.1 4489232 4490353 D hypothetical protein 4489232..4490353 Photorhabdus asymbiotica 8168072 YP_003042686.1 CDS PAU_03857 NC_012962.1 4491257 4491838 D hypothetical protein 4491257..4491838 Photorhabdus asymbiotica 8168073 YP_003042687.1 CDS PAU_03858 NC_012962.1 4491906 4492604 D hypothetical protein 4491906..4492604 Photorhabdus asymbiotica 8168074 YP_003042688.1 CDS PAU_03859 NC_012962.1 4492630 4495104 D In Gram-negative bacteria the biogenesis of fimbriae (or pili; putative usher protein (putative outer membrane usher protein) 4492630..4495104 Photorhabdus asymbiotica 8168075 YP_003042689.1 CDS yehA NC_012962.1 4495115 4496191 D fimbrial protein; putative fimbrial protein 4495115..4496191 Photorhabdus asymbiotica 8168076 YP_003042690.1 CDS bax NC_012962.1 4497480 4498268 D found in flagellar protein J (), which has been shown to hydrolyse peptidoglycan; hypothetical protein 4497480..4498268 Photorhabdus asymbiotica 8165463 YP_003042691.1 CDS gene0125 NC_012962.1 4498352 4498651 D hypothetical protein 4498352..4498651 Photorhabdus asymbiotica 8165550 YP_003042692.1 CDS gene0126 NC_012962.1 4498713 4500134 D hypothetical protein 4498713..4500134 Photorhabdus asymbiotica 8167741 YP_003042693.1 CDS PAU_03864 NC_012962.1 4500121 4501242 D hypothetical protein 4500121..4501242 Photorhabdus asymbiotica 8167742 YP_003042694.1 CDS PAU_03865 NC_012962.1 4501235 4502449 D putative periplasmic protein 4501235..4502449 Photorhabdus asymbiotica 8168077 YP_003042695.1 CDS gntU NC_012962.1 4502502 4503839 R low affinity gluconate transporter complement(4502502..4503839) Photorhabdus asymbiotica 8168078 YP_003042696.1 CDS gntK NC_012962.1 4503839 4504378 R thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase 1 complement(4503839..4504378) Photorhabdus asymbiotica 8169252 YP_003042697.1 CDS gntR NC_012962.1 4504547 4505542 R regulator of gluconate operon complement(4504547..4505542) Photorhabdus asymbiotica 8169250 YP_003042698.1 CDS hemG NC_012962.1 4512133 4512669 R catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase complement(4512133..4512669) Photorhabdus asymbiotica 8165248 YP_003042699.1 CDS trkH NC_012962.1 4512694 4514145 R potassium transporter complement(4512694..4514145) Photorhabdus asymbiotica 8169296 YP_003042700.1 CDS PAU_03871 NC_012962.1 4514183 4514794 R hypothetical protein complement(4514183..4514794) Photorhabdus asymbiotica 8167532 YP_003042701.1 CDS pepQ NC_012962.1 4514794 4516128 R catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase complement(4514794..4516128) Photorhabdus asymbiotica 8168079 YP_003042702.1 CDS fadB NC_012962.1 4516403 4518589 D includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 4516403..4518589 Photorhabdus asymbiotica 8168699 YP_003042703.1 CDS fadA NC_012962.1 4518586 4519767 D FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4518586..4519767 Photorhabdus asymbiotica 8166500 YP_003042704.1 CDS fre NC_012962.1 4519854 4520555 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(4519854..4520555) Photorhabdus asymbiotica 8166499 YP_003042705.1 CDS ubiD NC_012962.1 4520566 4522047 R catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate decarboxylase complement(4520566..4522047) Photorhabdus asymbiotica 8168155 YP_003042706.1 CDS rfaH NC_012962.1 4522530 4523018 D transcriptional activator RfaH 4522530..4523018 Photorhabdus asymbiotica 8168395 YP_003042707.1 CDS hemB NC_012962.1 4523067 4524080 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(4523067..4524080) Photorhabdus asymbiotica 8165168 YP_003042708.1 CDS tatC NC_012962.1 4524187 4524963 R with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC complement(4524187..4524963) Photorhabdus asymbiotica 8169291 YP_003042709.1 CDS tatB NC_012962.1 4524986 4525429 R sec-independent protein translocase protein tatb homolog complement(4524986..4525429) Photorhabdus asymbiotica 8167469 YP_003042710.1 CDS tatA NC_012962.1 4525433 4525693 R sec-independent protein translocase protein tata/e homolog complement(4525433..4525693) Photorhabdus asymbiotica 8167468 YP_003042711.1 CDS ubiB NC_012962.1 4525923 4527560 R an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB complement(4525923..4527560) Photorhabdus asymbiotica 8167467 YP_003042712.1 CDS PAU_03883 NC_012962.1 4527547 4528182 R hypothetical protein complement(4527547..4528182) Photorhabdus asymbiotica 8168393 YP_003042713.1 CDS ubiE NC_012962.1 4528199 4528954 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(4528199..4528954) Photorhabdus asymbiotica 8168080 YP_003042714.1 CDS rmuC NC_012962.1 4529151 4530506 R hypothetical protein complement(4529151..4530506) Photorhabdus asymbiotica 8168396 YP_003042715.1 CDS PAU_03886 NC_012962.1 4530612 4531148 R hypothetical protein complement(4530612..4531148) Photorhabdus asymbiotica 8164870 YP_003042716.1 CDS PAU_03887 NC_012962.1 4531217 4531999 R hypothetical protein complement(4531217..4531999) Photorhabdus asymbiotica 8168081 YP_003042717.1 CDS udp NC_012962.1 4532096 4532851 R catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase complement(4532096..4532851) Photorhabdus asymbiotica 8168082 YP_003042718.1 CDS pcp NC_012962.1 4533657 4534313 D catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase 4533657..4534313 Photorhabdus asymbiotica 8168404 YP_003042719.1 CDS PAU_03890 NC_012962.1 4534556 4535389 R hypothetical protein complement(4534556..4535389) Photorhabdus asymbiotica 8165650 YP_003042720.1 CDS metE NC_012962.1 4535633 4537909 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase complement(4535633..4537909) Photorhabdus asymbiotica 8168083 YP_003042721.1 CDS metR NC_012962.1 4538018 4538974 D hth-type transcriptional regulator metr 4538018..4538974 Photorhabdus asymbiotica 8168992 YP_003042722.1 CDS PAU_03893 NC_012962.1 4539184 4540833 R putative sodium/hydrogen exchanger family protein yjce complement(4539184..4540833) Photorhabdus asymbiotica 8166319 YP_003042723.1 CDS PAU_03894 NC_012962.1 4541104 4542474 R putative transport protein complement(4541104..4542474) Photorhabdus asymbiotica 8168084 YP_003042724.1 CDS PAU_03895 NC_012962.1 4542748 4543920 R probable major facilitator superfamily (mfs) transporter complement(4542748..4543920) Photorhabdus asymbiotica 8168085 YP_003042725.1 CDS PAU_03896 NC_012962.1 4544154 4544906 R hypothetical protein complement(4544154..4544906) Photorhabdus asymbiotica 8168086 YP_003042726.1 CDS PAU_03897 NC_012962.1 4545153 4545635 R hypothetical protein complement(4545153..4545635) Photorhabdus asymbiotica 8168087 YP_003042727.1 CDS PAU_03898 NC_012962.1 4545635 4546246 R hypothetical protein complement(4545635..4546246) Photorhabdus asymbiotica 8168088 YP_003042728.1 CDS PAU_03899 NC_012962.1 4547143 4547475 D hypothetical protein 4547143..4547475 Photorhabdus asymbiotica 8168089 YP_003042729.1 CDS PAU_03900 NC_012962.1 4547930 4548418 D hypothetical protein 4547930..4548418 Photorhabdus asymbiotica 8168090 YP_003042730.1 CDS PAU_03901 NC_012962.1 4548910 4549083 R similar to pyocin s3 immunity protein; putative immunity protein complement(4548910..4549083) Photorhabdus asymbiotica 8168091 YP_003042731.1 CDS PAU_03902 NC_012962.1 4549334 4549552 R This family includes bacterial colicin and pyocin immunity proteins. These immunity proteins can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity.; colicin/pyocin immunity protein complement(4549334..4549552) Photorhabdus asymbiotica 8168092 YP_003042732.1 CDS pys2 NC_012962.1 4549556 4549876 R Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism.; colicin structural protein complement(4549556..4549876) Photorhabdus asymbiotica 8168093 YP_003042733.1 CDS usp NC_012962.1 4549894 4551231 R Pyocins are polypeptide toxins produced by, and active against, bacteria. S-type pyocins cause cell death by DNA breakdown due to endonuclease activity; uropathogenic specific protein complement(4549894..4551231) Photorhabdus asymbiotica 8165129 YP_003042734.1 CDS adhC NC_012962.1 4551773 4552882 D glutathione-dependent formaldehyde dehydrogenase 4551773..4552882 Photorhabdus asymbiotica 8168424 YP_003042735.1 CDS PAU_03906 NC_012962.1 4552973 4553818 D hypothetical protein 4552973..4553818 Photorhabdus asymbiotica 8166741 YP_003042736.1 CDS ssb NC_012962.1 4555327 4555860 R binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein complement(4555327..4555860) Photorhabdus asymbiotica 8168094 YP_003042737.1 CDS uvrA NC_012962.1 4556223 4559057 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 4556223..4559057 Photorhabdus asymbiotica 8167679 YP_003042738.1 CDS PAU_03909 NC_012962.1 4559106 4560044 R hypothetical protein complement(4559106..4560044) Photorhabdus asymbiotica 8168431 YP_003042739.1 CDS yeiC NC_012962.1 4560041 4561132 R putative kinase complement(4560041..4561132) Photorhabdus asymbiotica 8168095 YP_003042740.1 CDS tyrB NC_012962.1 4561865 4563061 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(4561865..4563061) Photorhabdus asymbiotica 8165466 YP_003042741.1 CDS alr NC_012962.1 4563239 4564318 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(4563239..4564318) Photorhabdus asymbiotica 8168387 YP_003042742.1 CDS dnaB NC_012962.1 4564357 4565766 R unwinds double stranded DNA; replicative DNA helicase complement(4564357..4565766) Photorhabdus asymbiotica 8166774 YP_003042743.1 CDS qor NC_012962.1 4565939 4566922 D quinone oxidoreductase, NADPH-dependent 4565939..4566922 Photorhabdus asymbiotica 8168632 YP_003042744.1 CDS dusA NC_012962.1 4567232 4568257 R tRNA-dihydrouridine synthase A complement(4567232..4568257) Photorhabdus asymbiotica 8165131 YP_003042745.1 CDS PAU_03916 NC_012962.1 4568661 4569239 R hypothetical protein complement(4568661..4569239) Photorhabdus asymbiotica 8168656 YP_003042746.1 CDS PAU_03917 NC_012962.1 4569259 4569900 R hypothetical protein complement(4569259..4569900) Photorhabdus asymbiotica 8168096 YP_003042747.1 CDS PAU_03918 NC_012962.1 4570197 4570733 R hypothetical protein complement(4570197..4570733) Photorhabdus asymbiotica 8168097 YP_003042748.1 CDS PAU_03919 NC_012962.1 4571189 4571518 D sugar fermentation stimulation protein b (ner-like protein) 4571189..4571518 Photorhabdus asymbiotica 8168098 YP_003042749.1 CDS yfdK NC_012962.1 4571743 4572165 R hypothetical protein complement(4571743..4572165) Photorhabdus asymbiotica 8168099 YP_003042750.1 CDS PAU_03921 NC_012962.1 4572168 4573004 R hypothetical protein complement(4572168..4573004) Photorhabdus asymbiotica 8167858 YP_003042751.1 CDS PAU_03922 NC_012962.1 4573542 4574732 D similar to lactate oxidase; hypothetical protein 4573542..4574732 Photorhabdus asymbiotica 8168100 YP_003042752.1 CDS yceI NC_012962.1 4574836 4575399 D hypothetical protein 4574836..4575399 Photorhabdus asymbiotica 8168101 YP_003042753.1 CDS ynjI NC_012962.1 4575475 4576620 R hypothetical protein complement(4575475..4576620) Photorhabdus asymbiotica 8166626 YP_003042754.1 CDS zur NC_012962.1 4576837 4577346 D Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor 4576837..4577346 Photorhabdus asymbiotica 8165007 YP_003042755.1 CDS pri-1 NC_012962.1 4577375 4577491 R hypothetical protein complement(4577375..4577491) Photorhabdus asymbiotica 8169200 YP_003042756.1 CDS lexA NC_012962.1 4577513 4578118 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(4577513..4578118) Photorhabdus asymbiotica 8168312 YP_003042757.1 CDS dgkA NC_012962.1 4578238 4578609 R diacylglycerol kinase (dagk) (diglyceride kinase) (dgk) complement(4578238..4578609) Photorhabdus asymbiotica 8165079 YP_003042758.1 CDS plsB NC_012962.1 4578739 4581195 D PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4578739..4581195 Photorhabdus asymbiotica 8168616 YP_003042759.1 CDS ubiA NC_012962.1 4581370 4582236 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(4581370..4582236) Photorhabdus asymbiotica 8168761 YP_003042760.1 CDS ubiC NC_012962.1 4582257 4582868 R catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase complement(4582257..4582868) Photorhabdus asymbiotica 8168392 YP_003042761.1 CDS pgi NC_012962.1 4583090 4584736 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(4583090..4584736) Photorhabdus asymbiotica 8168394 YP_003042762.1 CDS lysC NC_012962.1 4585030 4586409 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 4585030..4586409 Photorhabdus asymbiotica 8168710 YP_003042763.1 CDS mrr NC_012962.1 4586482 4587393 R mrr restriction system protein complement(4586482..4587393) Photorhabdus asymbiotica 8168941 YP_003042764.1 CDS PAU_03935 NC_012962.1 4587619 4590864 D hypothetical protein 4587619..4590864 Photorhabdus asymbiotica 8166381 YP_003042765.1 CDS PAU_03936 NC_012962.1 4591295 4594708 D hypothetical protein 4591295..4594708 Photorhabdus asymbiotica 8168102 YP_003042766.1 CDS hsdM NC_012962.1 4594771 4596405 D type I restriction enzyme, modification subunit 4594771..4596405 Photorhabdus asymbiotica 8168103 YP_003042767.1 CDS hsdS NC_012962.1 4596402 4597535 D type i restriction enzyme ecobi specificity protein (s protein (s.ecobi) 4596402..4597535 Photorhabdus asymbiotica 8167328 YP_003042768.1 CDS fecI NC_012962.1 4597873 4598394 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport; RNA polymerase sigma factor FecI 4597873..4598394 Photorhabdus asymbiotica 8167331 YP_003042769.1 CDS fecR NC_012962.1 4598396 4599361 D with FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; fec operon regulator FecR 4598396..4599361 Photorhabdus asymbiotica 8166527 YP_003042770.1 CDS fecA NC_012962.1 4599446 4601806 D iron(iii) dicitrate outer membrane transporter protein feca 4599446..4601806 Photorhabdus asymbiotica 8166528 YP_003042771.1 CDS fecB NC_012962.1 4601866 4602774 D part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+); iron-dicitrate transporter substrate-binding subunit 4601866..4602774 Photorhabdus asymbiotica 8166522 YP_003042772.1 CDS fecC NC_012962.1 4602771 4603769 D part of the FecBCDE citrate-dependent iron (III) transport system; iron-dicitrate transporter permease subunit 4602771..4603769 Photorhabdus asymbiotica 8166523 YP_003042773.1 CDS fecD NC_012962.1 4603766 4604722 D Ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter), as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter.; iron-dicitrate transporter subunit FecD 4603766..4604722 Photorhabdus asymbiotica 8166524 YP_003042774.1 CDS fecE NC_012962.1 4604723 4605490 D Part of the FecBCDE citrate-dependent iron (III) transport system; iron-dicitrate transporter ATP-binding subunit 4604723..4605490 Photorhabdus asymbiotica 8166525 YP_003042775.1 CDS yhdJ NC_012962.1 4606192 4607445 R similar to adenine-specific methylase yhdj; hypothetical protein complement(4606192..4607445) Photorhabdus asymbiotica 8166526 YP_003042776.1 CDS PAU_03947 NC_012962.1 4607550 4607816 D hypothetical protein 4607550..4607816 Photorhabdus asymbiotica 8167597 YP_003042777.1 CDS PAU_03948 NC_012962.1 4607800 4608693 D hypothetical protein 4607800..4608693 Photorhabdus asymbiotica 8168104 YP_003042778.1 CDS PAU_03949 NC_012962.1 4609327 4610100 R putative transposase for insertion sequence element is150 complement(4609327..4610100) Photorhabdus asymbiotica 8168105 YP_003042779.1 CDS PAU_03950 NC_012962.1 4610169 4610675 R transposase, orfa, is3/is911 family complement(4610169..4610675) Photorhabdus asymbiotica 8168106 YP_003042780.1 CDS PAU_03951 NC_012962.1 4610720 4610878 R integrase complement(4610720..4610878) Photorhabdus asymbiotica 8168107 YP_003042781.1 CDS PAU_03952 NC_012962.1 4611196 4612146 R hypothetical protein complement(4611196..4612146) Photorhabdus asymbiotica 8168108 YP_003042782.1 CDS PAU_03953 NC_012962.1 4612139 4612534 R hypothetical protein complement(4612139..4612534) Photorhabdus asymbiotica 8168109 YP_003042783.1 CDS PAU_03954 NC_012962.1 4612733 4613443 R hypothetical protein complement(4612733..4613443) Photorhabdus asymbiotica 8166316 YP_003042784.1 CDS ykfI NC_012962.1 4613557 4613691 R hypothetical protein complement(4613557..4613691) Photorhabdus asymbiotica 8166563 YP_003042785.1 CDS PAU_03956 NC_012962.1 4613911 4614234 R hypothetical protein complement(4613911..4614234) Photorhabdus asymbiotica 8164992 YP_003042786.1 CDS yfjY NC_012962.1 4614247 4614717 R hypothetical protein complement(4614247..4614717) Photorhabdus asymbiotica 8166150 YP_003042787.1 CDS yafZ NC_012962.1 4614783 4615604 R hypothetical protein complement(4614783..4615604) Photorhabdus asymbiotica 8167551 YP_003042788.1 CDS PAU_03959 NC_012962.1 4615724 4616005 R hypothetical protein complement(4615724..4616005) Photorhabdus asymbiotica 8166575 YP_003042789.1 CDS PAU_03960 NC_012962.1 4616007 4616273 R hypothetical protein complement(4616007..4616273) Photorhabdus asymbiotica 8166151 YP_003042790.1 CDS PAU_03961 NC_012962.1 4616304 4616936 R hypothetical protein complement(4616304..4616936) Photorhabdus asymbiotica 8166152 YP_003042791.1 CDS yfjR NC_012962.1 4616942 4617643 R hypothetical protein complement(4616942..4617643) Photorhabdus asymbiotica 8166153 YP_003042792.1 CDS PAU_03963 NC_012962.1 4617856 4618608 R hypothetical protein complement(4617856..4618608) Photorhabdus asymbiotica 8167550 YP_003042793.1 CDS PAU_03964 NC_012962.1 4618553 4619065 R hypothetical protein complement(4618553..4619065) Photorhabdus asymbiotica 8166154 YP_003042794.1 CDS rox NC_012962.1 4619713 4619919 D putative regulatory protein 4619713..4619919 Photorhabdus asymbiotica 8166155 YP_003042795.1 CDS PAU_03966 NC_012962.1 4620014 4620610 D hypothetical protein 4620014..4620610 Photorhabdus asymbiotica 8164892 YP_003042796.1 CDS PAU_03967 NC_012962.1 4620822 4621139 D hypothetical protein 4620822..4621139 Photorhabdus asymbiotica 8166156 YP_003042797.1 CDS hsdM NC_012962.1 4621660 4623825 D type I restriction enzyme, modification subunit 4621660..4623825 Photorhabdus asymbiotica 8166157 YP_003042798.1 CDS prrC NC_012962.1 4623827 4625026 D anticodon nuclease prrc 4623827..4625026 Photorhabdus asymbiotica 8167329 YP_003042799.1 CDS hsdR NC_012962.1 4625019 4628138 D type i site-specific deoxyribonuclease hsdr 4625019..4628138 Photorhabdus asymbiotica 8168329 YP_003042800.1 CDS PAU_03971 NC_012962.1 4628515 4628817 R hypothetical protein complement(4628515..4628817) Photorhabdus asymbiotica 8167330 YP_003042801.1 CDS PAU_03972 NC_012962.1 4628814 4629269 R hypothetical protein complement(4628814..4629269) Photorhabdus asymbiotica 8166158 YP_003042802.1 CDS PAU_03973 NC_012962.1 4629300 4629425 R hypothetical protein complement(4629300..4629425) Photorhabdus asymbiotica 8166159 YP_003042803.1 CDS PAU_03974 NC_012962.1 4629653 4629958 R prophage p4 integrase complement(4629653..4629958) Photorhabdus asymbiotica 8166160 YP_003042804.1 CDS PAU_03975 NC_012962.1 4630043 4630909 R prophage p4 integrase complement(4630043..4630909) Photorhabdus asymbiotica 8166161 YP_003042805.1 CDS PAU_03976 NC_012962.1 4632477 4633355 D dna-binding prophage protein 4632477..4633355 Photorhabdus asymbiotica 8166162 YP_003042806.1 CDS alpA1 NC_012962.1 4633359 4633559 D putative dna binding protein 4633359..4633559 Photorhabdus asymbiotica 8166163 YP_003042807.1 CDS PAU_03978 NC_012962.1 4633556 4634179 D putative regulator encoded in prophage cp-933i (putative c repressor) 4633556..4634179 Photorhabdus asymbiotica 8166773 YP_003042808.1 CDS yabA NC_012962.1 4634271 4636190 D alpha replication protein of prophage cp-933i 4634271..4636190 Photorhabdus asymbiotica 8166164 YP_003042809.1 CDS PAU_03980 NC_012962.1 4636650 4636859 D transcriptional regulatory protein 4636650..4636859 Photorhabdus asymbiotica 8168513 YP_003042810.1 CDS PAU_03981 NC_012962.1 4636987 4638249 R p4 integrase-like protein complement(4636987..4638249) Photorhabdus asymbiotica 8166165 YP_003042811.1 CDS ampH NC_012962.1 4639000 4640217 D this protein has no known enzymatic function; beta-lactam binding protein AmpH 4639000..4640217 Photorhabdus asymbiotica 8167019 YP_003042812.1 CDS yjgQ NC_012962.1 4640325 4641401 R hypothetical protein complement(4640325..4641401) Photorhabdus asymbiotica 8166781 YP_003042813.1 CDS yjgP NC_012962.1 4641401 4642501 R inner membrane protein yjgp complement(4641401..4642501) Photorhabdus asymbiotica 8164983 YP_003042814.1 CDS pepA NC_012962.1 4642787 4644307 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4642787..4644307 Photorhabdus asymbiotica 8164982 YP_003042815.1 CDS holC NC_012962.1 4644342 4644818 D binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4644342..4644818 Photorhabdus asymbiotica 8168695 YP_003042816.1 CDS valS NC_012962.1 4644832 4647729 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4644832..4647729 Photorhabdus asymbiotica 8167306 YP_003042817.1 CDS PAU_03988 NC_012962.1 4647819 4648325 D is putative transposase 4647819..4648325 Photorhabdus asymbiotica 8168441 YP_003042818.1 CDS PAU_03989 NC_012962.1 4648394 4649167 D putative transposase insk for insertion sequence element is150 4648394..4649167 Photorhabdus asymbiotica 8166167 YP_003042819.1 CDS yecS NC_012962.1 4649760 4650533 D amino acid ABC transporter 4649760..4650533 Photorhabdus asymbiotica 8166168 YP_003042820.1 CDS yecS NC_012962.1 4650804 4651505 D amino acid ABC transporter extracellular solute-binding protein 4650804..4651505 Photorhabdus asymbiotica 8165453 YP_003042821.1 CDS yecC NC_012962.1 4651483 4652247 D hypothetical amino-acid abc transporter atp-binding protein yecc 4651483..4652247 Photorhabdus asymbiotica 8165454 YP_003042822.1 CDS PAU_03993 NC_012962.1 4652340 4653113 D amino acid ABC transporter 4652340..4653113 Photorhabdus asymbiotica 8165449 YP_003042823.1 CDS Cs-mech1 NC_012962.1 4654078 4655892 D hypothetical protein 4654078..4655892 Photorhabdus asymbiotica 8166169 YP_003042824.1 CDS PAU_03995 NC_012962.1 4656003 4656644 D hypothetical protein 4656003..4656644 Photorhabdus asymbiotica 8169098 YP_003042825.1 CDS yjgD NC_012962.1 4656796 4657212 R hypothetical protein complement(4656796..4657212) Photorhabdus asymbiotica 8166170 YP_003042826.1 CDS argI NC_012962.1 4657377 4658393 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I 4657377..4658393 Photorhabdus asymbiotica 8164980 YP_003042827.1 CDS pyrL NC_012962.1 4658433 4658633 D hypothetical protein 4658433..4658633 Photorhabdus asymbiotica 8166314 YP_003042828.1 CDS pyrB NC_012962.1 4658705 4659628 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 4658705..4659628 Photorhabdus asymbiotica 8165128 YP_003042829.1 CDS pyrI NC_012962.1 4659772 4660236 D involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 4659772..4660236 Photorhabdus asymbiotica 8165120 YP_003042830.1 CDS yjgF NC_012962.1 4660454 4660840 D hypothetical protein 4660454..4660840 Photorhabdus asymbiotica 8165127 YP_003042831.1 CDS nrdD NC_012962.1 4661093 4663231 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 4661093..4663231 Photorhabdus asymbiotica 8164981 YP_003042832.1 CDS nrdG NC_012962.1 4663249 4663713 D activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 4663249..4663713 Photorhabdus asymbiotica 8166933 YP_003042833.1 CDS yhbP NC_012962.1 4663716 4664147 R hypothetical protein complement(4663716..4664147) Photorhabdus asymbiotica 8166936 YP_003042834.1 CDS ycfR NC_012962.1 4664271 4664522 R hypothetical protein complement(4664271..4664522) Photorhabdus asymbiotica 8167587 YP_003042835.1 CDS yhbQ NC_012962.1 4664799 4665110 D hypothetical protein 4664799..4665110 Photorhabdus asymbiotica 8166632 YP_003042836.1 CDS yhbS NC_012962.1 4665083 4665586 R hypothetical protein complement(4665083..4665586) Photorhabdus asymbiotica 8167588 YP_003042837.1 CDS yhbT NC_012962.1 4665580 4665852 R putative lipid carrier protein yhbt complement(4665580..4665852) Photorhabdus asymbiotica 8167589 YP_003042838.1 CDS ubiA NC_012962.1 4666476 4667420 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 4666476..4667420 Photorhabdus asymbiotica 8167590 YP_003042839.1 CDS PAU_04010 NC_012962.1 4667441 4669969 D 3-hydroxy-3-methylglutaryl coenzyme a reductase 4667441..4669969 Photorhabdus asymbiotica 8166171 YP_003042840.1 CDS ppsA NC_012962.1 4670091 4672877 D phosphoenolpyruvate synthase 4670091..4672877 Photorhabdus asymbiotica 8166172 YP_003042841.1 CDS PAU_04012 NC_012962.1 4672870 4673925 D hypothetical protein 4672870..4673925 Photorhabdus asymbiotica 8168303 YP_003042842.1 CDS PAU_04013 NC_012962.1 4673922 4675508 D Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 4673922..4675508 Photorhabdus asymbiotica 8166173 YP_003042843.1 CDS PAU_04014 NC_012962.1 4675505 4676128 D CDP-diacylglycerol--serine O-phosphatidyltransferase 4675505..4676128 Photorhabdus asymbiotica 8166174 YP_003042844.1 CDS PAU_04015 NC_012962.1 4676118 4676660 D CDP-diglyceride synthetase 4676118..4676660 Photorhabdus asymbiotica 8166175 YP_003042845.1 CDS PAU_04016 NC_012962.1 4676733 4676876 D hypothetical protein 4676733..4676876 Photorhabdus asymbiotica 8166176 YP_003042846.1 CDS PAU_04017 NC_012962.1 4676882 4678027 R hypothetical protein complement(4676882..4678027) Photorhabdus asymbiotica 8166177 YP_003042847.1 CDS PAU_04018 NC_012962.1 4678027 4679172 R hypothetical protein complement(4678027..4679172) Photorhabdus asymbiotica 8166178 YP_003042848.1 CDS PAU_04019 NC_012962.1 4679180 4680151 R hypothetical protein complement(4679180..4680151) Photorhabdus asymbiotica 8166179 YP_003042849.1 CDS yehU NC_012962.1 4680388 4682073 D putative 2-component sensor protein 4680388..4682073 Photorhabdus asymbiotica 8166180 YP_003042850.1 CDS yehT NC_012962.1 4682083 4682805 D unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 4682083..4682805 Photorhabdus asymbiotica 8165465 YP_003042851.1 CDS cstA NC_012962.1 4682976 4684778 D carbon starvation protein a 4682976..4684778 Photorhabdus asymbiotica 8165464 YP_003042852.1 CDS deaD NC_012962.1 4684846 4686753 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD complement(4684846..4686753) Photorhabdus asymbiotica 8169107 YP_003042853.1 CDS nlpI NC_012962.1 4686912 4687796 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(4686912..4687796) Photorhabdus asymbiotica 8168604 YP_003042854.1 CDS pnp NC_012962.1 4687922 4690048 R polynucleotide phosphorylase/polyadenylase complement(4687922..4690048) Photorhabdus asymbiotica 8166927 YP_003042855.1 CDS rpsO NC_012962.1 4690295 4690564 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(4690295..4690564) Photorhabdus asymbiotica 8167020 YP_003042856.1 CDS truB NC_012962.1 4690688 4691635 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(4690688..4691635) Photorhabdus asymbiotica 8167021 YP_003042857.1 CDS rbfA NC_012962.1 4691635 4692045 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(4691635..4692045) Photorhabdus asymbiotica 8168370 YP_003042858.1 CDS infB NC_012962.1 4692111 4694843 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(4692111..4694843) Photorhabdus asymbiotica 8165138 YP_003042859.1 CDS nusA NC_012962.1 4694868 4696376 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(4694868..4696376) Photorhabdus asymbiotica 8167370 YP_003042860.1 CDS yhbC NC_012962.1 4696398 4696856 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(4696398..4696856) Photorhabdus asymbiotica 8166958 YP_003042861.1 CDS secG NC_012962.1 4697345 4697689 R preprotein translocase subunit SecG complement(4697345..4697689) Photorhabdus asymbiotica 8167023 YP_003042862.1 CDS glmM NC_012962.1 4697866 4699203 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(4697866..4699203) Photorhabdus asymbiotica 8167630 YP_003042863.1 CDS folP NC_012962.1 4699196 4700044 R catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; dihydropteroate synthase complement(4699196..4700044) Photorhabdus asymbiotica 8167748 YP_003042864.1 CDS hflB NC_012962.1 4700122 4702083 R inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease complement(4700122..4702083) Photorhabdus asymbiotica 8168148 YP_003042865.1 CDS rrmJ NC_012962.1 4702132 4702761 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J complement(4702132..4702761) Photorhabdus asymbiotica 8166382 YP_003042866.1 CDS yhbY NC_012962.1 4702897 4703190 D hypothetical protein 4702897..4703190 Photorhabdus asymbiotica 8167149 YP_003042867.1 CDS greA NC_012962.1 4703325 4703801 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(4703325..4703801) Photorhabdus asymbiotica 8167593 YP_003042868.1 CDS PAU_04039 NC_012962.1 4703814 4703912 R hypothetical protein complement(4703814..4703912) Photorhabdus asymbiotica 8169263 YP_003042869.1 CDS dacB NC_012962.1 4703963 4705513 D penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase/endopeptidase 4703963..4705513 Photorhabdus asymbiotica 8166181 YP_003042870.1 CDS obgE NC_012962.1 4705569 4706744 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(4705569..4706744) Photorhabdus asymbiotica 8169150 YP_003042871.1 CDS rpmA NC_012962.1 4706871 4707128 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(4706871..4707128) Photorhabdus asymbiotica 8167594 YP_003042872.1 CDS rplU NC_012962.1 4707147 4707455 R 50S ribosomal protein L21 complement(4707147..4707455) Photorhabdus asymbiotica 8164919 YP_003042873.1 CDS ispB NC_012962.1 4707707 4708678 D octaprenyl diphosphate synthase 4707707..4708678 Photorhabdus asymbiotica 8164914 YP_003042874.1 CDS PAU_04045 NC_012962.1 4708700 4709101 R hypothetical protein complement(4708700..4709101) Photorhabdus asymbiotica 8165028 YP_003042875.1 CDS PAU_04046 NC_012962.1 4709157 4709504 R hypothetical protein complement(4709157..4709504) Photorhabdus asymbiotica 8166182 YP_003042876.1 CDS PAU_04047 NC_012962.1 4709582 4709956 D sugar fermentation stimulation protein b (ner-like protein) 4709582..4709956 Photorhabdus asymbiotica 8166183 YP_003042877.1 CDS mdh NC_012962.1 4710061 4710999 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(4710061..4710999) Photorhabdus asymbiotica 8166184 YP_003042878.1 CDS argR NC_012962.1 4711739 4712209 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 4711739..4712209 Photorhabdus asymbiotica 8168974 YP_003042879.1 CDS mpl NC_012962.1 4712254 4713645 R UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase complement(4712254..4713645) Photorhabdus asymbiotica 8165492 YP_003042880.1 CDS fbp NC_012962.1 4713739 4714794 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 4713739..4714794 Photorhabdus asymbiotica 8166355 YP_003042881.1 CDS ppa NC_012962.1 4714961 4715491 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 4714961..4715491 Photorhabdus asymbiotica 8166510 YP_003042882.1 CDS ytfP NC_012962.1 4715592 4715939 R hypothetical protein complement(4715592..4715939) Photorhabdus asymbiotica 8168291 YP_003042883.1 CDS ytfN NC_012962.1 4715942 4719715 R hypothetical protein complement(4715942..4719715) Photorhabdus asymbiotica 8169191 YP_003042884.1 CDS ytfM NC_012962.1 4719712 4721454 R hypothetical protein complement(4719712..4721454) Photorhabdus asymbiotica 8169190 YP_003042885.1 CDS msrA NC_012962.1 4721570 4722202 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 4721570..4722202 Photorhabdus asymbiotica 8169189 YP_003042886.1 CDS ytfL NC_012962.1 4722374 4723693 D upf0053 inner membrane protein ytfl 4722374..4723693 Photorhabdus asymbiotica 8166386 YP_003042887.1 CDS ytfK NC_012962.1 4723808 4724014 R hypothetical protein complement(4723808..4724014) Photorhabdus asymbiotica 8169188 YP_003042888.1 CDS ytfJ NC_012962.1 4724302 4724856 D hypothetical protein 4724302..4724856 Photorhabdus asymbiotica 8169187 YP_003042889.1 CDS cysQ NC_012962.1 4724937 4725680 R catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; adenosine-3'(2'),5'-bisphosphate nucleotidase complement(4724937..4725680) Photorhabdus asymbiotica 8169186 YP_003042890.1 CDS fklB NC_012962.1 4725828 4726448 R FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase complement(4725828..4726448) Photorhabdus asymbiotica 8169142 YP_003042891.1 CDS PAU_04062 NC_012962.1 4726712 4727422 D putative transcriptional regulator 4726712..4727422 Photorhabdus asymbiotica 8166542 YP_003042892.1 CDS PAU_04063 NC_012962.1 4727459 4728754 R hypothetical protein complement(4727459..4728754) Photorhabdus asymbiotica 8166185 YP_003042893.1 CDS PAU_04064 NC_012962.1 4728765 4729952 R hypothetical protein complement(4728765..4729952) Photorhabdus asymbiotica 8166186 YP_003042894.1 CDS PAU_04065 NC_012962.1 4730077 4731774 R putative carbamoyl transferase complement(4730077..4731774) Photorhabdus asymbiotica 8166187 YP_003042895.1 CDS PAU_04066 NC_012962.1 4731793 4732596 R hypothetical protein complement(4731793..4732596) Photorhabdus asymbiotica 8166188 YP_003042896.1 CDS argG NC_012962.1 4732593 4733783 R argininosuccinate synthase complement(4732593..4733783) Photorhabdus asymbiotica 8166189 YP_003042897.1 CDS PAU_04068 NC_012962.1 4733773 4734819 R cysteine synthase a complement(4733773..4734819) Photorhabdus asymbiotica 8166800 YP_003042898.1 CDS rplI NC_012962.1 4735501 4735953 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(4735501..4735953) Photorhabdus asymbiotica 8166190 YP_003042899.1 CDS rpsR NC_012962.1 4735992 4736219 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(4735992..4736219) Photorhabdus asymbiotica 8164902 YP_003042900.1 CDS priB NC_012962.1 4736224 4736541 R binds single-stranded DNA at the primosome assembly site; primosomal replication protein N complement(4736224..4736541) Photorhabdus asymbiotica 8167143 YP_003042901.1 CDS rpsF NC_012962.1 4736547 4736942 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(4736547..4736942) Photorhabdus asymbiotica 8168314 YP_003042902.1 CDS rlmB NC_012962.1 4737099 4737836 R Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase complement(4737099..4737836) Photorhabdus asymbiotica 8167131 YP_003042903.1 CDS rnr NC_012962.1 4737925 4740417 R 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R complement(4737925..4740417) Photorhabdus asymbiotica 8164861 YP_003042904.1 CDS yjeB NC_012962.1 4740414 4740839 R negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR complement(4740414..4740839) Photorhabdus asymbiotica 8164885 YP_003042905.1 CDS purA2 NC_012962.1 4741030 4742340 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(4741030..4742340) Photorhabdus asymbiotica 8164971 YP_003042906.1 CDS hflC NC_012962.1 4742478 4743488 R with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC complement(4742478..4743488) Photorhabdus asymbiotica 8168355 YP_003042907.1 CDS hflK NC_012962.1 4743491 4744717 R with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK complement(4743491..4744717) Photorhabdus asymbiotica 8169303 YP_003042908.1 CDS hflX NC_012962.1 4744823 4746103 R involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; putative GTPase HflX complement(4744823..4746103) Photorhabdus asymbiotica 8169304 YP_003042909.1 CDS hfq NC_012962.1 4746198 4746506 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(4746198..4746506) Photorhabdus asymbiotica 8169305 YP_003042910.1 CDS miaA NC_012962.1 4746617 4747558 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(4746617..4747558) Photorhabdus asymbiotica 8169306 YP_003042911.1 CDS mutL NC_012962.1 4747551 4749452 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(4747551..4749452) Photorhabdus asymbiotica 8166326 YP_003042912.1 CDS amiB NC_012962.1 4749464 4750765 R N-acetylmuramoyl-L-alanine amidase complement(4749464..4750765) Photorhabdus asymbiotica 8166888 YP_003042913.1 CDS yjeE NC_012962.1 4750762 4751226 R hypothetical protein complement(4750762..4751226) Photorhabdus asymbiotica 8166776 YP_003042914.1 CDS yjeS NC_012962.1 4751407 4752564 D hypothetical protein 4751407..4752564 Photorhabdus asymbiotica 8164972 YP_003042915.1 CDS PAU_04086 NC_012962.1 4753133 4753588 R hypothetical protein complement(4753133..4753588) Photorhabdus asymbiotica 8164975 YP_003042916.1 CDS PAU_04087 NC_012962.1 4754010 4754345 D hypothetical protein 4754010..4754345 Photorhabdus asymbiotica 8166191 YP_003042917.1 CDS orn NC_012962.1 4754969 4755514 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(4754969..4755514) Photorhabdus asymbiotica 8167026 YP_003042918.1 CDS yjeQ NC_012962.1 4755610 4756665 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4755610..4756665 Photorhabdus asymbiotica 8165618 YP_003042919.1 CDS psd NC_012962.1 4756742 4757614 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4756742..4757614 Photorhabdus asymbiotica 8164974 YP_003042920.1 CDS yjeP NC_012962.1 4757662 4760997 D hypothetical protein 4757662..4760997 Photorhabdus asymbiotica 8168331 YP_003042921.1 CDS PAU_04092 NC_012962.1 4761077 4761340 R hypothetical protein complement(4761077..4761340) Photorhabdus asymbiotica 8164973 YP_003042922.1 CDS PAU_04093 NC_012962.1 4761898 4763343 D hypothetical protein 4761898..4763343 Photorhabdus asymbiotica 8166193 YP_003042923.1 CDS PAU_04094 NC_012962.1 4763361 4765337 D hypothetical protein 4763361..4765337 Photorhabdus asymbiotica 8166194 YP_003042924.1 CDS PAU_04095 NC_012962.1 4765334 4765834 D hypothetical protein 4765334..4765834 Photorhabdus asymbiotica 8166195 YP_003042925.1 CDS PAU_04096 NC_012962.1 4765828 4766166 D hypothetical protein 4765828..4766166 Photorhabdus asymbiotica 8166196 YP_003042926.1 CDS PAU_04097 NC_012962.1 4766168 4766794 D hypothetical protein 4766168..4766794 Photorhabdus asymbiotica 8166197 YP_003042927.1 CDS PAU_04098 NC_012962.1 4766830 4767558 D hypothetical protein 4766830..4767558 Photorhabdus asymbiotica 8166198 YP_003042928.1 CDS PAU_04099 NC_012962.1 4767561 4767824 D hypothetical protein 4767561..4767824 Photorhabdus asymbiotica 8166199 YP_003042929.1 CDS PAU_04100 NC_012962.1 4767989 4768615 D hypothetical protein 4767989..4768615 Photorhabdus asymbiotica 8166200 YP_003042930.1 CDS PAU_04101 NC_012962.1 4768643 4769377 D hypothetical protein 4768643..4769377 Photorhabdus asymbiotica 8166201 YP_003042931.1 CDS PAU_04102 NC_012962.1 4769380 4769643 D hypothetical protein 4769380..4769643 Photorhabdus asymbiotica 8166202 YP_003042932.1 CDS PAU_04103 NC_012962.1 4769808 4770434 D hypothetical protein 4769808..4770434 Photorhabdus asymbiotica 8166203 YP_003042933.1 CDS PAU_04104 NC_012962.1 4770480 4771214 D hypothetical protein 4770480..4771214 Photorhabdus asymbiotica 8166204 YP_003042934.1 CDS PAU_04105 NC_012962.1 4771217 4771480 D hypothetical protein 4771217..4771480 Photorhabdus asymbiotica 8166205 YP_003042935.1 CDS PAU_04106 NC_012962.1 4771644 4771904 D hypothetical protein 4771644..4771904 Photorhabdus asymbiotica 8166206 YP_003042936.1 CDS PAU_04107 NC_012962.1 4772048 4772179 R antitoxin of the YoeB-YefM toxin-antitoxin system; hypothetical protein complement(4772048..4772179) Photorhabdus asymbiotica 8166207 YP_003042937.1 CDS PAU_04108 NC_012962.1 4772392 4772583 R putative transposase, IS30 family complement(4772392..4772583) Photorhabdus asymbiotica 8166208 YP_003042938.1 CDS yigL NC_012962.1 4773431 4774231 R purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; putative sugar phosphatase complement(4773431..4774231) Photorhabdus asymbiotica 8166209 YP_003042939.1 CDS pldB NC_012962.1 4774253 4775251 R lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 complement(4774253..4775251) Photorhabdus asymbiotica 8164959 YP_003042940.1 CDS recQ NC_012962.1 4775266 4777092 R functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ complement(4775266..4777092) Photorhabdus asymbiotica 8168759 YP_003042941.1 CDS PAU_04112 NC_012962.1 4777579 4778049 D hypothetical protein 4777579..4778049 Photorhabdus asymbiotica 8165159 YP_003042942.1 CDS rarD NC_012962.1 4778171 4779061 D Drug resistance/sensitivity to chloramphenicol; rard protein 4778171..4779061 Photorhabdus asymbiotica 8166210 YP_003042943.1 CDS PAU_04114 NC_012962.1 4779070 4779285 D hypothetical protein 4779070..4779285 Photorhabdus asymbiotica 8165136 YP_003042944.1 CDS PAU_04115 NC_012962.1 4779333 4779647 D hypothetical protein 4779333..4779647 Photorhabdus asymbiotica 8166211 YP_003042945.1 CDS corA NC_012962.1 4779908 4780858 R responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA complement(4779908..4780858) Photorhabdus asymbiotica 8166212 YP_003042946.1 CDS uvrD NC_012962.1 4780954 4783125 R unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II complement(4780954..4783125) Photorhabdus asymbiotica 8169083 YP_003042947.1 CDS yigB NC_012962.1 4783183 4783899 R hypothetical protein complement(4783183..4783899) Photorhabdus asymbiotica 8168434 YP_003042948.1 CDS xerC NC_012962.1 4783899 4784810 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(4783899..4784810) Photorhabdus asymbiotica 8164958 YP_003042949.1 CDS yigA NC_012962.1 4784807 4785511 R hypothetical protein complement(4784807..4785511) Photorhabdus asymbiotica 8168504 YP_003042950.1 CDS dapF NC_012962.1 4785545 4786381 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(4785545..4786381) Photorhabdus asymbiotica 8164957 YP_003042951.1 CDS yifL NC_012962.1 4786415 4786600 R hypothetical protein complement(4786415..4786600) Photorhabdus asymbiotica 8169161 YP_003042952.1 CDS cyaY NC_012962.1 4786673 4786999 D defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 4786673..4786999 Photorhabdus asymbiotica 8164956 YP_003042953.1 CDS cyaA NC_012962.1 4787029 4789605 R catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase complement(4787029..4789605) Photorhabdus asymbiotica 8169115 YP_003042954.1 CDS hemC NC_012962.1 4790202 4791143 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4790202..4791143 Photorhabdus asymbiotica 8169114 YP_003042955.1 CDS hemD NC_012962.1 4791140 4791880 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 4791140..4791880 Photorhabdus asymbiotica 8169292 YP_003042956.1 CDS hemX NC_012962.1 4791892 4793031 D putative uroporphyrinogen III C-methyltransferase 4791892..4793031 Photorhabdus asymbiotica 8169293 YP_003042957.1 CDS hemY NC_012962.1 4793035 4794243 D putative protoheme IX biogenesis protein 4793035..4794243 Photorhabdus asymbiotica 8169300 YP_003042958.1 CDS PAU_04129 NC_012962.1 4794303 4794635 R hypothetical protein complement(4794303..4794635) Photorhabdus asymbiotica 8169301 YP_003042959.1 CDS yifK NC_012962.1 4796110 4797504 R uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; putative transport protein YifK complement(4796110..4797504) Photorhabdus asymbiotica 8167030 YP_003042960.1 CDS wecG NC_012962.1 4797732 4798469 R putative UDP-N-acetyl-D-mannosaminuronic acid transferase complement(4797732..4798469) Photorhabdus asymbiotica 8164955 YP_003042961.1 CDS wzyE NC_012962.1 4798460 4799839 R enterobacterial common antigen polymerase; putative common antigen polymerase complement(4798460..4799839) Photorhabdus asymbiotica 8168492 YP_003042962.1 CDS wecF NC_012962.1 4799839 4800921 R catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase complement(4799839..4800921) Photorhabdus asymbiotica 8168501 YP_003042963.1 CDS wzxE NC_012962.1 4800918 4802168 R lipopolysaccharide biosynthesis protein complement(4800918..4802168) Photorhabdus asymbiotica 8168491 YP_003042964.1 CDS wecE NC_012962.1 4802170 4803300 R catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase complement(4802170..4803300) Photorhabdus asymbiotica 8168499 YP_003042965.1 CDS PAU_04136 NC_012962.1 4803287 4804033 R TDP-fucosamine acetyltransferase complement(4803287..4804033) Photorhabdus asymbiotica 8168490 YP_003042966.1 CDS rffH NC_012962.1 4804011 4804892 R glucose-1-phosphate thymidylyltransferase complement(4804011..4804892) Photorhabdus asymbiotica 8166214 YP_003042967.1 CDS rffG NC_012962.1 4804910 4805980 R dtdp-glucose 4,6-dehydratase complement(4804910..4805980) Photorhabdus asymbiotica 8165171 YP_003042968.1 CDS wecC NC_012962.1 4805977 4807239 R catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase complement(4805977..4807239) Photorhabdus asymbiotica 8165170 YP_003042969.1 CDS wecB NC_012962.1 4807244 4808365 R udp-n-acetylglucosamine 2-epimerase complement(4807244..4808365) Photorhabdus asymbiotica 8168489 YP_003042970.1 CDS wzzE NC_012962.1 4808493 4809548 R Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE complement(4808493..4809548) Photorhabdus asymbiotica 8168488 YP_003042971.1 CDS wecA NC_012962.1 4809575 4810660 R undecaprenyl-phosphate alpha-n-acetylglucosaminyltransferase complement(4809575..4810660) Photorhabdus asymbiotica 8168502 YP_003042972.1 CDS rho NC_012962.1 4810947 4812206 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(4810947..4812206) Photorhabdus asymbiotica 8168487 YP_003042973.1 CDS trxA NC_012962.1 4812682 4813008 R thioredoxin 1 (trx1) (trx) complement(4812682..4813008) Photorhabdus asymbiotica 8165176 YP_003042974.1 CDS rhlB NC_012962.1 4813126 4814412 D enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4813126..4814412 Photorhabdus asymbiotica 8168373 YP_003042975.1 CDS gppA NC_012962.1 4814418 4815929 D catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase 4814418..4815929 Photorhabdus asymbiotica 8165174 YP_003042976.1 CDS rep NC_012962.1 4816103 4818130 R single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep complement(4816103..4818130) Photorhabdus asymbiotica 8169261 YP_003042977.1 CDS ilvC NC_012962.1 4818346 4819824 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(4818346..4819824) Photorhabdus asymbiotica 8165163 YP_003042978.1 CDS ilvY NC_012962.1 4820017 4820898 D participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4820017..4820898 Photorhabdus asymbiotica 8167358 YP_003042979.1 CDS PAU_04150 NC_012962.1 4821479 4822315 D hypothetical protein 4821479..4822315 Photorhabdus asymbiotica 8167365 YP_003042980.1 CDS PAU_04151 NC_012962.1 4822545 4823630 R potassium uptake protein TrkA complement(4822545..4823630) Photorhabdus asymbiotica 8166215 YP_003042981.1 CDS PAU_04152 NC_012962.1 4824016 4825194 D hypothetical protein 4824016..4825194 Photorhabdus asymbiotica 8166216 YP_003042982.1 CDS PAU_04153 NC_012962.1 4825211 4825567 D hypothetical protein 4825211..4825567 Photorhabdus asymbiotica 8166217 YP_003042983.1 CDS PAU_04154 NC_012962.1 4825564 4826748 D hypothetical protein 4825564..4826748 Photorhabdus asymbiotica 8166218 YP_003042984.1 CDS PAU_04155 NC_012962.1 4826873 4827109 D hypothetical protein 4826873..4827109 Photorhabdus asymbiotica 8166219 YP_003042985.1 CDS fabF NC_012962.1 4827265 4828530 D 3-oxoacyl-[acyl-carrier-protein] synthase 2 4827265..4828530 Photorhabdus asymbiotica 8166220 YP_003042986.1 CDS PAU_04157 NC_012962.1 4828527 4829345 D hypothetical protein 4828527..4829345 Photorhabdus asymbiotica 8166493 YP_003042987.1 CDS fabG NC_012962.1 4829401 4830144 D 3-oxoacyl-[acyl-carrier-protein] reductase 4829401..4830144 Photorhabdus asymbiotica 8166221 YP_003042988.1 CDS PAU_04159 NC_012962.1 4830476 4831648 D emrA confers resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds.; multidrug resistance secretion protein 4830476..4831648 Photorhabdus asymbiotica 8166495 YP_003042989.1 CDS PAU_04160 NC_012962.1 4831641 4833173 D emrB confers resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds.; multidrug resistance protein b 4831641..4833173 Photorhabdus asymbiotica 8166222 YP_003042990.1 CDS ilvA NC_012962.1 4833369 4834931 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(4833369..4834931) Photorhabdus asymbiotica 8166223 YP_003042991.1 CDS ilvD NC_012962.1 4834935 4836785 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(4834935..4836785) Photorhabdus asymbiotica 8167357 YP_003042992.1 CDS ilvE NC_012962.1 4836857 4837783 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(4836857..4837783) Photorhabdus asymbiotica 8167359 YP_003042993.1 CDS ilvM NC_012962.1 4837810 4838067 R acetolactate synthase 2 regulatory subunit complement(4837810..4838067) Photorhabdus asymbiotica 8167360 YP_003042994.1 CDS ilvG NC_012962.1 4838064 4839710 R catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit complement(4838064..4839710) Photorhabdus asymbiotica 8167364 YP_003042995.1 CDS yifB NC_012962.1 4840574 4842124 D putative 2-component regulator 4840574..4842124 Photorhabdus asymbiotica 8167361 YP_003042996.1 CDS PAU_04167 NC_012962.1 4842170 4842508 R hypothetical protein complement(4842170..4842508) Photorhabdus asymbiotica 8164954 YP_003042997.1 CDS pssR NC_012962.1 4843081 4843470 D lysr-family transcriptional regulatory protein 4843081..4843470 Photorhabdus asymbiotica 8166224 YP_003042998.1 CDS PAU_04169 NC_012962.1 4843597 4843776 R hypothetical protein complement(4843597..4843776) Photorhabdus asymbiotica 8168337 YP_003042999.1 CDS PAU_04170 NC_012962.1 4843959 4844261 D Transposase 4843959..4844261 Photorhabdus asymbiotica 8166225 YP_003043000.1 CDS PAU_04171 NC_012962.1 4844328 4844837 D Transposase 4844328..4844837 Photorhabdus asymbiotica 8166226 YP_003043001.1 CDS yrdA NC_012962.1 4850968 4851513 D putative transferase 4850968..4851513 Photorhabdus asymbiotica 8165250 YP_003043002.1 CDS aroE NC_012962.1 4851746 4852564 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(4851746..4852564) Photorhabdus asymbiotica 8169180 YP_003043003.1 CDS PAU_04174 NC_012962.1 4852571 4853140 R RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; putative ribosome maturation factor complement(4852571..4853140) Photorhabdus asymbiotica 8165501 YP_003043004.1 CDS PAU_04175 NC_012962.1 4853155 4853694 R hypothetical protein complement(4853155..4853694) Photorhabdus asymbiotica 8166228 YP_003043005.1 CDS smf NC_012962.1 4853759 4854844 R DNA protecting protein DprA complement(4853759..4854844) Photorhabdus asymbiotica 8166229 YP_003043006.1 CDS def NC_012962.1 4854977 4855489 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 4854977..4855489 Photorhabdus asymbiotica 8167654 YP_003043007.1 CDS fmt NC_012962.1 4855514 4856464 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 4855514..4856464 Photorhabdus asymbiotica 8168607 YP_003043008.1 CDS rsmB NC_012962.1 4856503 4857792 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase B 4856503..4857792 Photorhabdus asymbiotica 8168136 YP_003043009.1 CDS trkA NC_012962.1 4857848 4859224 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 4857848..4859224 Photorhabdus asymbiotica 8167155 YP_003043010.1 CDS PAU_04181 NC_012962.1 4859514 4859981 D Transposase 4859514..4859981 Photorhabdus asymbiotica 8167531 YP_003043011.1 CDS PAU_04182 NC_012962.1 4859941 4860399 D Transposase 4859941..4860399 Photorhabdus asymbiotica 8166230 YP_003043012.1 CDS PAU_04183 NC_012962.1 4860448 4860948 D Transposase 4860448..4860948 Photorhabdus asymbiotica 8166231 YP_003043013.1 CDS PAU_04184 NC_012962.1 4861086 4861286 D Transposase 4861086..4861286 Photorhabdus asymbiotica 8165654 YP_003043014.1 CDS PAU_04185 NC_012962.1 4861308 4862042 D Transposase 4861308..4862042 Photorhabdus asymbiotica 8165182 YP_003043015.1 CDS PAU_04186 NC_012962.1 4862023 4862346 D Transposase 4862023..4862346 Photorhabdus asymbiotica 8165183 YP_003043016.1 CDS PAU_04187 NC_012962.1 4862381 4862845 R Transposase complement(4862381..4862845) Photorhabdus asymbiotica 8165184 YP_003043017.1 CDS PAU_04188 NC_012962.1 4863012 4863167 R hypothetical protein complement(4863012..4863167) Photorhabdus asymbiotica 8165185 YP_003043018.1 CDS zntR NC_012962.1 4863246 4863587 R hth-type transcriptional regulator zntr (zn(ii)-responsive regulato of znta) complement(4863246..4863587) Photorhabdus asymbiotica 8165186 YP_003043019.1 CDS rplQ NC_012962.1 4863796 4864188 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(4863796..4864188) Photorhabdus asymbiotica 8169196 YP_003043020.1 CDS rpoA NC_012962.1 4864229 4865218 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(4864229..4865218) Photorhabdus asymbiotica 8164910 YP_003043021.1 CDS rpsD NC_012962.1 4865244 4865864 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(4865244..4865864) Photorhabdus asymbiotica 8164928 YP_003043022.1 CDS rpsK NC_012962.1 4865900 4866289 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(4865900..4866289) Photorhabdus asymbiotica 8167129 YP_003043023.1 CDS rpsM NC_012962.1 4866305 4866661 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(4866305..4866661) Photorhabdus asymbiotica 8167136 YP_003043024.1 CDS PAU_04195 NC_012962.1 4866784 4866897 D hypothetical protein 4866784..4866897 Photorhabdus asymbiotica 8167035 YP_003043025.1 CDS secY NC_012962.1 4866957 4868288 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(4866957..4868288) Photorhabdus asymbiotica 8165187 YP_003043026.1 CDS rplO NC_012962.1 4868296 4868730 R late assembly protein; 50S ribosomal protein L15 complement(4868296..4868730) Photorhabdus asymbiotica 8167632 YP_003043027.1 CDS rpmD NC_012962.1 4868734 4868919 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(4868734..4868919) Photorhabdus asymbiotica 8164908 YP_003043028.1 CDS rpsE NC_012962.1 4868919 4869419 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(4868919..4869419) Photorhabdus asymbiotica 8164921 YP_003043029.1 CDS rplR NC_012962.1 4869434 4869787 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(4869434..4869787) Photorhabdus asymbiotica 8167130 YP_003043030.1 CDS rplF NC_012962.1 4869797 4870330 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(4869797..4870330) Photorhabdus asymbiotica 8164911 YP_003043031.1 CDS rpsH NC_012962.1 4870345 4870731 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(4870345..4870731) Photorhabdus asymbiotica 8164901 YP_003043032.1 CDS rpsN NC_012962.1 4870771 4871076 R 30S ribosomal subunit protein S14 complement(4870771..4871076) Photorhabdus asymbiotica 8167133 YP_003043033.1 CDS rplE NC_012962.1 4871089 4871628 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(4871089..4871628) Photorhabdus asymbiotica 8167139 YP_003043034.1 CDS rplX NC_012962.1 4871643 4871957 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(4871643..4871957) Photorhabdus asymbiotica 8164900 YP_003043035.1 CDS rplN NC_012962.1 4871968 4872339 R 50s ribosomal subunit protein l14 complement(4871968..4872339) Photorhabdus asymbiotica 8164917 YP_003043036.1 CDS rpsQ NC_012962.1 4872507 4872761 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(4872507..4872761) Photorhabdus asymbiotica 8164907 YP_003043037.1 CDS rplP NC_012962.1 4872952 4873362 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(4872952..4873362) Photorhabdus asymbiotica 8167142 YP_003043038.1 CDS rpsC NC_012962.1 4873375 4874076 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(4873375..4874076) Photorhabdus asymbiotica 8164909 YP_003043039.1 CDS rplV NC_012962.1 4874094 4874426 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(4874094..4874426) Photorhabdus asymbiotica 8167128 YP_003043040.1 CDS rpsS NC_012962.1 4874441 4874719 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(4874441..4874719) Photorhabdus asymbiotica 8164915 YP_003043041.1 CDS rplB NC_012962.1 4874734 4875558 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(4874734..4875558) Photorhabdus asymbiotica 8167144 YP_003043042.1 CDS rplW NC_012962.1 4875577 4875879 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(4875577..4875879) Photorhabdus asymbiotica 8164897 YP_003043043.1 CDS rplD NC_012962.1 4875876 4876481 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(4875876..4876481) Photorhabdus asymbiotica 8164916 YP_003043044.1 CDS rplC NC_012962.1 4876498 4877127 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(4876498..4877127) Photorhabdus asymbiotica 8164899 YP_003043045.1 CDS rpsJ NC_012962.1 4877160 4877471 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(4877160..4877471) Photorhabdus asymbiotica 8164898 YP_003043046.1 CDS PAU_04217 NC_012962.1 4877743 4878687 D Transposase 4877743..4878687 Photorhabdus asymbiotica 8167135 YP_003043047.1 CDS bfr NC_012962.1 4878769 4879245 R iron storage protein; bacterioferritin complement(4878769..4879245) Photorhabdus asymbiotica 8165188 YP_003043048.1 CDS bfd NC_012962.1 4879323 4879538 R iron storage regulator; bacterioferritin-associated ferredoxin complement(4879323..4879538) Photorhabdus asymbiotica 8165557 YP_003043049.1 CDS PAU_04220 NC_012962.1 4879678 4879839 R hypothetical protein complement(4879678..4879839) Photorhabdus asymbiotica 8165555 YP_003043050.1 CDS tufA NC_012962.1 4880026 4881210 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(4880026..4881210) Photorhabdus asymbiotica 8165189 YP_003043051.1 CDS PAU_04222 NC_012962.1 4881915 4882967 R Transposase complement(4881915..4882967) Photorhabdus asymbiotica 8167039 YP_003043052.1 CDS coaA NC_012962.1 4883278 4884228 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4883278..4884228 Photorhabdus asymbiotica 8165190 YP_003043053.1 CDS birA NC_012962.1 4884272 4885231 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(4884272..4885231) Photorhabdus asymbiotica 8168586 YP_003043054.1 CDS murB NC_012962.1 4885228 4886253 R UDP-n-acetylenolpyruvoylglucosamine reductase complement(4885228..4886253) Photorhabdus asymbiotica 8165568 YP_003043055.1 CDS murI NC_012962.1 4892476 4893282 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(4892476..4893282) Photorhabdus asymbiotica 8165251 YP_003043056.1 CDS btuB NC_012962.1 4893287 4895146 R involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter complement(4893287..4895146) Photorhabdus asymbiotica 8166886 YP_003043057.1 CDS trmA NC_012962.1 4895332 4896432 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4895332..4896432 Photorhabdus asymbiotica 8168520 YP_003043058.1 CDS yijD NC_012962.1 4896496 4896867 R hypothetical protein complement(4896496..4896867) Photorhabdus asymbiotica 8167533 YP_003043059.1 CDS yijC NC_012962.1 4896891 4897535 R negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR complement(4896891..4897535) Photorhabdus asymbiotica 8164967 YP_003043060.1 CDS sthA NC_012962.1 4897717 4899114 D catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4897717..4899114 Photorhabdus asymbiotica 8164966 YP_003043061.1 CDS oxyR NC_012962.1 4899106 4900011 R Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR complement(4899106..4900011) Photorhabdus asymbiotica 8167686 YP_003043062.1 CDS argH NC_012962.1 4900163 4901542 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(4900163..4901542) Photorhabdus asymbiotica 8165624 YP_003043063.1 CDS argG NC_012962.1 4901693 4902946 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(4901693..4902946) Photorhabdus asymbiotica 8166802 YP_003043064.1 CDS argB NC_012962.1 4902975 4903748 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(4902975..4903748) Photorhabdus asymbiotica 8166801 YP_003043065.1 CDS argC NC_012962.1 4903774 4904778 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(4903774..4904778) Photorhabdus asymbiotica 8166796 YP_003043066.1 CDS argE NC_012962.1 4904881 4906038 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4904881..4906038 Photorhabdus asymbiotica 8166797 YP_003043067.1 CDS ppc NC_012962.1 4906324 4908960 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4906324..4908960 Photorhabdus asymbiotica 8166799 YP_003043068.1 CDS PAU_04240 NC_012962.1 4909244 4909855 D hypothetical protein 4909244..4909855 Photorhabdus asymbiotica 8168292 YP_003043069.1 CDS tcbA NC_012962.1 4910218 4910388 R tcda2; insecticidal toxin complex protein tcba (toxin complex protein) complement(4910218..4910388) Photorhabdus asymbiotica 8165191 YP_003043070.1 CDS metF NC_012962.1 4911000 4911884 R MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase complement(4911000..4911884) Photorhabdus asymbiotica 8167473 YP_003043071.1 CDS metL NC_012962.1 4912225 4914660 R multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II complement(4912225..4914660) Photorhabdus asymbiotica 8168993 YP_003043072.1 CDS metB NC_012962.1 4914663 4915835 R catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase complement(4914663..4915835) Photorhabdus asymbiotica 8168199 YP_003043073.1 CDS metJ NC_012962.1 4916107 4916424 D when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4916107..4916424 Photorhabdus asymbiotica 8168990 YP_003043074.1 CDS rpmE NC_012962.1 4916556 4916918 R 50s ribosomal protein l31 complement(4916556..4916918) Photorhabdus asymbiotica 8168197 YP_003043075.1 CDS priA NC_012962.1 4916972 4919191 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 4916972..4919191 Photorhabdus asymbiotica 8164922 YP_003043076.1 CDS cytR NC_012962.1 4919518 4920546 D negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR 4919518..4920546 Photorhabdus asymbiotica 8168313 YP_003043077.1 CDS ftsN NC_012962.1 4920616 4921410 D cell division protein FtsN 4920616..4921410 Photorhabdus asymbiotica 8169148 YP_003043078.1 CDS hslV NC_012962.1 4921535 4922065 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4921535..4922065 Photorhabdus asymbiotica 8168167 YP_003043079.1 CDS hslU NC_012962.1 4922077 4923408 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4922077..4923408 Photorhabdus asymbiotica 8167336 YP_003043080.1 CDS menA NC_012962.1 4923506 4924423 D catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4923506..4924423 Photorhabdus asymbiotica 8167335 YP_003043081.1 CDS rraA NC_012962.1 4924532 4925041 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4924532..4925041 Photorhabdus asymbiotica 8168982 YP_003043082.1 CDS yiiU NC_012962.1 4925105 4925413 R similar to unknown protein yiiu of escherichia coli; hypothetical protein complement(4925105..4925413) Photorhabdus asymbiotica 8167147 YP_003043083.1 CDS PAU_04255 NC_012962.1 4925434 4925622 R hypothetical protein complement(4925434..4925622) Photorhabdus asymbiotica 8164965 YP_003043084.1 CDS glpF NC_012962.1 4925652 4926482 D glycerol uptake facilitator protein (aquaglyceroporin) 4925652..4926482 Photorhabdus asymbiotica 8165192 YP_003043085.1 CDS glpK NC_012962.1 4926512 4928035 D glycerol kinase 4926512..4928035 Photorhabdus asymbiotica 8167762 YP_003043086.1 CDS emrD NC_012962.1 4928092 4929285 R multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D complement(4928092..4929285) Photorhabdus asymbiotica 8167764 YP_003043087.1 CDS fpr NC_012962.1 4929609 4930355 D ferredoxin-NADP reductase 4929609..4930355 Photorhabdus asymbiotica 8168672 YP_003043088.1 CDS yiiR NC_012962.1 4930358 4930792 R hypothetical protein complement(4930358..4930792) Photorhabdus asymbiotica 8168150 YP_003043089.1 CDS PAU_04261 NC_012962.1 4930878 4931450 D hypothetical protein 4930878..4931450 Photorhabdus asymbiotica 8164964 YP_003043090.1 CDS tpiA NC_012962.1 4931585 4932352 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 4931585..4932352 Photorhabdus asymbiotica 8165193 YP_003043091.1 CDS sbp NC_012962.1 4932416 4933432 R sulfate transporter subunit complement(4932416..4933432) Photorhabdus asymbiotica 8167526 YP_003043092.1 CDS pfkA NC_012962.1 4933601 4934572 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(4933601..4934572) Photorhabdus asymbiotica 8167179 YP_003043093.1 CDS PAU_04265 NC_012962.1 4934966 4935904 R phosphatidate cytidylyltransferase complement(4934966..4935904) Photorhabdus asymbiotica 8168707 YP_003043094.1 CDS PAU_04266 NC_012962.1 4935907 4936548 R acyltransferase, putative complement(4935907..4936548) Photorhabdus asymbiotica 8165194 YP_003043095.1 CDS PAU_04267 NC_012962.1 4936541 4937215 R cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase related protein complement(4936541..4937215) Photorhabdus asymbiotica 8165195 YP_003043096.1 CDS yacB NC_012962.1 4938167 4938478 R yacb-transcriptional repressor; yacb complement(4938167..4938478) Photorhabdus asymbiotica 8165196 YP_003043097.1 CDS vco27AB NC_012962.1 4938480 4938758 R Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes , . RelB stably binds RelE, presumably deactivating it.; relb protein complement(4938480..4938758) Photorhabdus asymbiotica 8168516 YP_003043098.1 CDS ecoO109IREP NC_012962.1 4939756 4940043 D putative transcriptional regulator 4939756..4940043 Photorhabdus asymbiotica 8168443 YP_003043099.1 CDS PAU_04271 NC_012962.1 4940145 4940660 R putative tail fiber component of prophage complement(4940145..4940660) Photorhabdus asymbiotica 8168662 YP_003043100.1 CDS PAU_04272 NC_012962.1 4940671 4941843 R probable major tail sheath protein complement(4940671..4941843) Photorhabdus asymbiotica 8165197 YP_003043101.1 CDS PAU_04273 NC_012962.1 4942080 4942439 D hypothetical protein 4942080..4942439 Photorhabdus asymbiotica 8165198 YP_003043102.1 CDS PAU_04274 NC_012962.1 4942436 4942774 D hypothetical protein 4942436..4942774 Photorhabdus asymbiotica 8165199 YP_003043103.1 CDS PAU_04275 NC_012962.1 4943166 4943414 R hypothetical protein complement(4943166..4943414) Photorhabdus asymbiotica 8165200 YP_003043104.1 CDS PAU_04276 NC_012962.1 4943485 4944096 R hypothetical protein complement(4943485..4944096) Photorhabdus asymbiotica 8165201 YP_003043105.1 CDS tfaD NC_012962.1 4944186 4944638 R tail fiber assembly protein homolog from lambdoid prophage dlp12 complement(4944186..4944638) Photorhabdus asymbiotica 8165202 YP_003043106.1 CDS PAU_04278 NC_012962.1 4944639 4945886 R putative phage protein gph complement(4944639..4945886) Photorhabdus asymbiotica 8167493 YP_003043107.1 CDS PAU_04279 NC_012962.1 4945915 4946163 R probable variable tail fibre protein complement(4945915..4946163) Photorhabdus asymbiotica 8165203 YP_003043108.1 CDS PAU_04280 NC_012962.1 4946160 4946435 R putative bacteriophage protein precursor complement(4946160..4946435) Photorhabdus asymbiotica 8165204 YP_003043109.1 CDS PAU_04281 NC_012962.1 4946381 4946773 R putative bacteriophage protein precursor complement(4946381..4946773) Photorhabdus asymbiotica 8165205 YP_003043110.1 CDS PAU_04282 NC_012962.1 4946766 4947680 R probable bacteriophage baseplate assembly protein complement(4946766..4947680) Photorhabdus asymbiotica 8165206 YP_003043111.1 CDS PAU_04283 NC_012962.1 4947677 4948018 R phage baseplate assembly protein complement(4947677..4948018) Photorhabdus asymbiotica 8165207 YP_003043112.1 CDS PAU_04284 NC_012962.1 4948015 4948689 R putative phage baseplate assembly protein complement(4948015..4948689) Photorhabdus asymbiotica 8165208 YP_003043113.1 CDS PAU_04285 NC_012962.1 4948691 4949356 R predicted tail completion phage protein complement(4948691..4949356) Photorhabdus asymbiotica 8165209 YP_003043114.1 CDS PAU_04286 NC_012962.1 4949358 4949774 R putative phage tail protein complement(4949358..4949774) Photorhabdus asymbiotica 8165210 YP_003043115.1 CDS PAU_04287 NC_012962.1 4949915 4950301 R putative bacteriophage protein complement(4949915..4950301) Photorhabdus asymbiotica 8165211 YP_003043116.1 CDS PAU_04288 NC_012962.1 4950298 4950693 R phage structural protein p5 complement(4950298..4950693) Photorhabdus asymbiotica 8165212 YP_003043117.1 CDS PAU_04289 NC_012962.1 4950686 4951009 R bacteriophage protein complement(4950686..4951009) Photorhabdus asymbiotica 8165213 YP_003043118.1 CDS PAU_04290 NC_012962.1 4950973 4951215 R probable phage tail protein complement(4950973..4951215) Photorhabdus asymbiotica 8165214 YP_003043119.1 CDS PAU_04291 NC_012962.1 4951215 4951679 R putative capsid completion protein complement(4951215..4951679) Photorhabdus asymbiotica 8165215 YP_003043120.1 CDS PAU_04292 NC_012962.1 4951764 4952429 R phage r protein complement(4951764..4952429) Photorhabdus asymbiotica 8165216 YP_003043121.1 CDS PAU_04293 NC_012962.1 4952422 4953537 R major capsid protein complement(4952422..4953537) Photorhabdus asymbiotica 8165217 YP_003043122.1 CDS PAU_04294 NC_012962.1 4953552 4954388 R putative capsid scaffolding protein complement(4953552..4954388) Photorhabdus asymbiotica 8165218 YP_003043123.1 CDS PAU_04295 NC_012962.1 4954531 4956288 D probable phage terminase subunit 4954531..4956288 Photorhabdus asymbiotica 8165219 YP_003043124.1 CDS PAU_04296 NC_012962.1 4956358 4957341 D probable capsid portal protein 4956358..4957341 Photorhabdus asymbiotica 8165220 YP_003043125.1 CDS PAU_04297 NC_012962.1 4957657 4957962 R prophage protein gp48 complement(4957657..4957962) Photorhabdus asymbiotica 8165221 YP_003043126.1 CDS PAU_04298 NC_012962.1 4957971 4958306 R putative bacteriophage protein complement(4957971..4958306) Photorhabdus asymbiotica 8165222 YP_003043127.1 CDS PAU_04299 NC_012962.1 4958554 4959162 R dna-cytosine methyltransferase complement(4958554..4959162) Photorhabdus asymbiotica 8165223 YP_003043128.1 CDS PAU_04300 NC_012962.1 4959181 4959684 R cytosine-specific DNA methyltransferase complement(4959181..4959684) Photorhabdus asymbiotica 8165224 YP_003043129.1 CDS PAU_04301 NC_012962.1 4959681 4960262 R putative phage replication protein complement(4959681..4960262) Photorhabdus asymbiotica 8165225 YP_003043130.1 CDS PAU_04302 NC_012962.1 4960335 4961183 R putative phage replication protein complement(4960335..4961183) Photorhabdus asymbiotica 8165226 YP_003043131.1 CDS PAU_04303 NC_012962.1 4961267 4961809 R hypothetical protein complement(4961267..4961809) Photorhabdus asymbiotica 8165227 YP_003043132.1 CDS PAU_04304 NC_012962.1 4961806 4962285 R putative DNA adenine methylase complement(4961806..4962285) Photorhabdus asymbiotica 8165228 YP_003043133.1 CDS cox NC_012962.1 4962527 4962766 R probable bacteriophage cox protein complement(4962527..4962766) Photorhabdus asymbiotica 8165229 YP_003043134.1 CDS c NC_012962.1 4962898 4963191 D hypothetical phage repressor protein c 4962898..4963191 Photorhabdus asymbiotica 8169085 YP_003043135.1 CDS PAU_04307 NC_012962.1 4963523 4964221 D putative phage integrase 4963523..4964221 Photorhabdus asymbiotica 8168526 YP_003043136.1 CDS cpxP NC_012962.1 4964455 4964967 R hypothetical protein complement(4964455..4964967) Photorhabdus asymbiotica 8165230 YP_003043137.1 CDS cpxR NC_012962.1 4965098 4965793 D response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR 4965098..4965793 Photorhabdus asymbiotica 8169089 YP_003043138.1 CDS cpxA NC_012962.1 4965790 4967160 D part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 4965790..4967160 Photorhabdus asymbiotica 8169090 YP_003043139.1 CDS udg NC_012962.1 4967561 4968871 D UDP-glucose/GDP-mannose dehydrogenase 4967561..4968871 Photorhabdus asymbiotica 8169088 YP_003043140.1 CDS wblB NC_012962.1 4968885 4969934 D probable dehydrogenase 4968885..4969934 Photorhabdus asymbiotica 8168402 YP_003043141.1 CDS wblC NC_012962.1 4969953 4970540 D acetyltransferases (the isoleucine patch superfamily) 4969953..4970540 Photorhabdus asymbiotica 8168466 YP_003043142.1 CDS wblD NC_012962.1 4970555 4971625 D cys/met metabolism pyridoxal-phosphate-dependen enzymes:degt/dnrj/eryc1/strs aminotransferase:aromatic amino aci beta-eliminating lyase/threonine aldolase:aminotransferase, class and ii 4970555..4971625 Photorhabdus asymbiotica 8168467 YP_003043143.1 CDS wzxA NC_012962.1 4971631 4972854 D polysaccharide biosynthesis protein; hypothetical protein 4971631..4972854 Photorhabdus asymbiotica 8168468 YP_003043144.1 CDS wblE NC_012962.1 4972856 4973968 D hypothetical protein 4972856..4973968 Photorhabdus asymbiotica 8168498 YP_003043145.1 CDS wblL NC_012962.1 4973958 4975187 D hypothetical protein 4973958..4975187 Photorhabdus asymbiotica 8168469 YP_003043146.1 CDS wblG NC_012962.1 4975184 4976287 D wbph (probable glycosyltransferase wbph) 4975184..4976287 Photorhabdus asymbiotica 8168475 YP_003043147.1 CDS wblH NC_012962.1 4976293 4977363 D UDP-n-acetylglucosamine 2-epimerase 4976293..4977363 Photorhabdus asymbiotica 8168471 YP_003043148.1 CDS wblI NC_012962.1 4977360 4978598 D probable glycosyltransferase 4977360..4978598 Photorhabdus asymbiotica 8168472 YP_003043149.1 CDS wblK NC_012962.1 4978591 4979748 D aminotransferase, degt/dnrj/eryc1/strs family 4978591..4979748 Photorhabdus asymbiotica 8168473 YP_003043150.1 CDS wblF NC_012962.1 4979749 4980360 D glycosyltransferase precursor 4979749..4980360 Photorhabdus asymbiotica 8168474 YP_003043151.1 CDS wblM NC_012962.1 4980370 4982244 D polysaccharide biosynthesis protein capd 4980370..4982244 Photorhabdus asymbiotica 8168470 YP_003043152.1 CDS PAU_04324 NC_012962.1 4982411 4982563 D hypothetical protein 4982411..4982563 Photorhabdus asymbiotica 8168476 YP_003043153.1 CDS wblN NC_012962.1 4982598 4983557 D hypothetical protein 4982598..4983557 Photorhabdus asymbiotica 8165231 YP_003043154.1 CDS wblO NC_012962.1 4984308 4985168 D glucose-1-phosphate thymidylyltransferase 4984308..4985168 Photorhabdus asymbiotica 8168477 YP_003043155.1 CDS vioA NC_012962.1 4985314 4986420 D aminotransferase, degt/dnrj/eryc1/strs family 4985314..4986420 Photorhabdus asymbiotica 8168478 YP_003043156.1 CDS wbqC NC_012962.1 4986420 4987109 D hypothetical protein 4986420..4987109 Photorhabdus asymbiotica 8168448 YP_003043157.1 CDS purN NC_012962.1 4987102 4987764 D phosphoribosylglycinamide formyltransferase 4987102..4987764 Photorhabdus asymbiotica 8168483 YP_003043158.1 CDS PAU_04330 NC_012962.1 4987761 4989236 D polysaccharide biosynthesis domain protein 4987761..4989236 Photorhabdus asymbiotica 8165107 YP_003043159.1 CDS capG NC_012962.1 4989552 4990103 D acetyltransferase 4989552..4990103 Photorhabdus asymbiotica 8165232 YP_003043160.1 CDS wbqE NC_012962.1 4990594 4991472 D putative glycosyl transferase 4990594..4991472 Photorhabdus asymbiotica 8168528 YP_003043161.1 CDS wbqF NC_012962.1 4991485 4992003 D putative acetyltransferase 4991485..4992003 Photorhabdus asymbiotica 8168484 YP_003043162.1 CDS wzy NC_012962.1 4992102 4993346 D hypothetical protein 4992102..4993346 Photorhabdus asymbiotica 8168485 YP_003043163.1 CDS wbnK NC_012962.1 4993352 4994500 D putative glycosyl transferase 4993352..4994500 Photorhabdus asymbiotica 8168500 YP_003043164.1 CDS wbfR NC_012962.1 4994503 4996434 D asparagine synthase, glutamine-hydrolyzing 4994503..4996434 Photorhabdus asymbiotica 8168481 YP_003043165.1 CDS gna NC_012962.1 4996526 4997803 D udp-n-acetyl-d-galactosamine dehydrogenase 4996526..4997803 Photorhabdus asymbiotica 8168463 YP_003043166.1 CDS wbpP NC_012962.1 4997807 4998844 D putative nad-dependent epimerase/dehydratase 4997807..4998844 Photorhabdus asymbiotica 8169248 YP_003043167.1 CDS wfaH NC_012962.1 4998915 5000036 D glycosyl transferase, group 1 family protein 4998915..5000036 Photorhabdus asymbiotica 8168482 YP_003043168.1 CDS wbfT NC_012962.1 5000036 5000968 D nad-dependent epimerase/dehydratase 5000036..5000968 Photorhabdus asymbiotica 8168493 YP_003043169.1 CDS PAU_04341 NC_012962.1 5000988 5001551 D sugar transferase 5000988..5001551 Photorhabdus asymbiotica 8168464 YP_003043170.1 CDS wbgZ NC_012962.1 5001640 5003601 D polysaccharide biosynthesis protein capd 5001640..5003601 Photorhabdus asymbiotica 8165233 YP_003043171.1 CDS galE NC_012962.1 5003673 5004689 D udp-glucose 4-epimerase (galactowaldenase) (udp-galactose 4 epimerase) 5003673..5004689 Photorhabdus asymbiotica 8168465 YP_003043172.1 CDS yibK NC_012962.1 5004751 5005263 D hypothetical tRNA/rRNA methyltransferase 5004751..5005263 Photorhabdus asymbiotica 8168184 YP_003043173.1 CDS cysE NC_012962.1 5005364 5006200 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(5005364..5006200) Photorhabdus asymbiotica 8164939 YP_003043174.1 CDS gpsA NC_012962.1 5006238 5007260 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(5006238..5007260) Photorhabdus asymbiotica 8169129 YP_003043175.1 CDS secB NC_012962.1 5007260 5007736 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(5007260..5007736) Photorhabdus asymbiotica 8169262 YP_003043176.1 CDS yibN NC_012962.1 5007809 5008210 R hypothetical protein complement(5007809..5008210) Photorhabdus asymbiotica 8167628 YP_003043177.1 CDS yibP NC_012962.1 5008597 5009916 D hypothetical protein 5008597..5009916 Photorhabdus asymbiotica 8164940 YP_003043178.1 CDS yibQ NC_012962.1 5009921 5010826 D hypothetical protein 5009921..5010826 Photorhabdus asymbiotica 8164941 YP_003043179.1 CDS tdh NC_012962.1 5011015 5012040 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(5011015..5012040) Photorhabdus asymbiotica 8164942 YP_003043180.1 CDS kbl NC_012962.1 5012050 5013246 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase complement(5012050..5013246) Photorhabdus asymbiotica 8167488 YP_003043181.1 CDS rfaD NC_012962.1 5013444 5014418 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-mannoheptose-6-epimerase 5013444..5014418 Photorhabdus asymbiotica 8165050 YP_003043182.1 CDS rfaF NC_012962.1 5014429 5015481 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose:LPS heptosyltransferase II 5014429..5015481 Photorhabdus asymbiotica 8169323 YP_003043183.1 CDS rfaC NC_012962.1 5015481 5016446 D ADP-heptose:LPS heptosyl transferase I 5015481..5016446 Photorhabdus asymbiotica 8165166 YP_003043184.1 CDS walV NC_012962.1 5016941 5017909 R hypothetical protein complement(5016941..5017909) Photorhabdus asymbiotica 8165165 YP_003043185.1 CDS PAU_04357 NC_012962.1 5018127 5019191 D putative LPS biosynthesis enzyme (lipopolysaccharide core biosynthesi protein rfaq) 5018127..5019191 Photorhabdus asymbiotica 8168461 YP_003043186.1 CDS rfaG NC_012962.1 5019188 5020318 D lipopolysaccharide core biosynthesis protein rfag (glucosyltransferas i) 5019188..5020318 Photorhabdus asymbiotica 8165234 YP_003043187.1 CDS walW NC_012962.1 5020315 5021427 D putative glycosyltransferase 5020315..5021427 Photorhabdus asymbiotica 8165167 YP_003043188.1 CDS kdtA NC_012962.1 5021528 5022805 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 5021528..5022805 Photorhabdus asymbiotica 8168462 YP_003043189.1 CDS kdtX NC_012962.1 5022806 5023567 D lipopolysaccharide core biosynthesis glycosyl transferase kdtx 5022806..5023567 Photorhabdus asymbiotica 8165061 YP_003043190.1 CDS coaD NC_012962.1 5023579 5024061 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 5023579..5024061 Photorhabdus asymbiotica 8165062 YP_003043191.1 CDS mutM NC_012962.1 5024132 5024941 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(5024132..5024941) Photorhabdus asymbiotica 8168587 YP_003043192.1 CDS rfaL NC_012962.1 5025053 5026279 D lipid a-core:surface polymer ligase 5025053..5026279 Photorhabdus asymbiotica 8166889 YP_003043193.1 CDS walM NC_012962.1 5026333 5027511 R glycosyl transferase, group 1 complement(5026333..5027511) Photorhabdus asymbiotica 8165169 YP_003043194.1 CDS walN NC_012962.1 5027511 5028614 R glycosyl transferase, group 1 complement(5027511..5028614) Photorhabdus asymbiotica 8168458 YP_003043195.1 CDS waaQ NC_012962.1 5028611 5029243 R walO protein complement(5028611..5029243) Photorhabdus asymbiotica 8168459 YP_003043196.1 CDS walR NC_012962.1 5029430 5030551 R glycosyltransferase complement(5029430..5030551) Photorhabdus asymbiotica 8168453 YP_003043197.1 CDS MAL13P1.17 NC_012962.1 5030570 5030677 R hypothetical protein complement(5030570..5030677) Photorhabdus asymbiotica 8168460 YP_003043198.1 CDS rpmG NC_012962.1 5030726 5030893 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(5030726..5030893) Photorhabdus asymbiotica 8168949 YP_003043199.1 CDS rpmB NC_012962.1 5030905 5031141 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(5030905..5031141) Photorhabdus asymbiotica 8164925 YP_003043200.1 CDS radC NC_012962.1 5031382 5032074 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(5031382..5032074) Photorhabdus asymbiotica 8164920 YP_003043201.1 CDS PAU_04373 NC_012962.1 5032167 5032391 R hypothetical protein complement(5032167..5032391) Photorhabdus asymbiotica 8165134 YP_003043202.1 CDS dfp NC_012962.1 5032394 5033611 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 5032394..5033611 Photorhabdus asymbiotica 8165235 YP_003043203.1 CDS dut NC_012962.1 5033592 5034047 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 5033592..5034047 Photorhabdus asymbiotica 8168615 YP_003043204.1 CDS slmA NC_012962.1 5034160 5034759 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 5034160..5034759 Photorhabdus asymbiotica 8168659 YP_003043205.1 CDS pyrE NC_012962.1 5034819 5035460 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(5034819..5035460) Photorhabdus asymbiotica 8167648 YP_003043206.1 CDS rph NC_012962.1 5035544 5036257 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(5035544..5036257) Photorhabdus asymbiotica 8165123 YP_003043207.1 CDS PAU_04379 NC_012962.1 5036383 5037246 D hypothetical protein 5036383..5037246 Photorhabdus asymbiotica 8164894 YP_003043208.1 CDS PAU_04380 NC_012962.1 5038269 5038472 D hypothetical protein 5038269..5038472 Photorhabdus asymbiotica 8165236 YP_003043209.1 CDS PAU_04381 NC_012962.1 5038501 5039730 R MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients; macrolide-efflux protein complement(5038501..5039730) Photorhabdus asymbiotica 8165237 YP_003043210.1 CDS PAU_04382 NC_012962.1 5039778 5040698 R hypothetical protein complement(5039778..5040698) Photorhabdus asymbiotica 8165238 YP_003043211.1 CDS PAU_04383 NC_012962.1 5041370 5043019 R hypothetical protein complement(5041370..5043019) Photorhabdus asymbiotica 8165239 YP_003043212.1 CDS selB NC_012962.1 5043152 5045011 R selenocysteinyl-tRNA-specific translation factor complement(5043152..5045011) Photorhabdus asymbiotica 8165240 YP_003043213.1 CDS selA NC_012962.1 5045047 5046438 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(5045047..5046438) Photorhabdus asymbiotica 8167634 YP_003043214.1 CDS fdhE NC_012962.1 5046460 5047389 R required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE complement(5046460..5047389) Photorhabdus asymbiotica 8167633 YP_003043215.1 CDS metLA2 NC_012962.1 5047939 5048901 D o-methyltransferase-like protein 5047939..5048901 Photorhabdus asymbiotica 8166513 YP_003043216.1 CDS PAU_04388 NC_012962.1 5048919 5049152 R hypothetical protein complement(5048919..5049152) Photorhabdus asymbiotica 8168200 YP_003043217.1 CDS GeOMT NC_012962.1 5049786 5050739 D o-methyltransferase-like protein 5049786..5050739 Photorhabdus asymbiotica 8165241 YP_003043218.1 CDS fdoI1 NC_012962.1 5051486 5052127 R cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma complement(5051486..5052127) Photorhabdus asymbiotica 8167743 YP_003043219.1 CDS fdoH1 NC_012962.1 5052124 5053053 R formate dehydrogenase-o, iron-sulfur subunit (formate dehydrogenase-beta subunit) (fdh-z beta subunit) (aerobic formate dehydrogenas iron-sulfur subunit) complement(5052124..5053053) Photorhabdus asymbiotica 8166518 YP_003043220.1 CDS fdoG1 NC_012962.1 5053065 5056112 R putative formate dehydrogenase-O, major subunit complement(5053065..5056112) Photorhabdus asymbiotica 8166516 YP_003043221.1 CDS fdhD NC_012962.1 5056292 5057122 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 5056292..5057122 Photorhabdus asymbiotica 8166515 YP_003043222.1 CDS PAU_04394 NC_012962.1 5057528 5058100 D hypothetical protein 5057528..5058100 Photorhabdus asymbiotica 8166512 YP_003043223.1 CDS PAU_04395 NC_012962.1 5058186 5059208 D n6 adenine-specific dna methyltransferase, d12 class 5058186..5059208 Photorhabdus asymbiotica 8165242 YP_003043224.1 CDS PAU_04396 NC_012962.1 5059195 5060205 R hypothetical protein complement(5059195..5060205) Photorhabdus asymbiotica 8165243 YP_003043225.1 CDS trmE NC_012962.1 5060327 5061691 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(5060327..5061691) Photorhabdus asymbiotica 8165244 YP_003043226.1 CDS oxaA NC_012962.1 5061790 5063430 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(5061790..5063430) Photorhabdus asymbiotica 8168110 YP_003043227.1 CDS yidD NC_012962.1 5063433 5063693 R hypothetical protein complement(5063433..5063693) Photorhabdus asymbiotica 8165623 YP_003043228.1 CDS rnpA NC_012962.1 5063657 5064016 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(5063657..5064016) Photorhabdus asymbiotica 8164948 YP_003043229.1 CDS rpmH NC_012962.1 5064033 5064173 R 50s ribosomal protein l34 complement(5064033..5064173) Photorhabdus asymbiotica 8164884 PAU_t001 tRNA PAU_t001 NC_012962.1 56391 56463 D tRNA-Glu 56391..56463 Photorhabdus asymbiotica 8165245 PAU_t002 tRNA PAU_t002 NC_012962.1 113677 113767 D tRNA-Sec 113677..113767 Photorhabdus asymbiotica 8165577 PAU_t003 tRNA PAU_t003 NC_012962.1 250377 250450 D tRNA-Pro 250377..250450 Photorhabdus asymbiotica 8169245 PAU_t004 tRNA PAU_t004 NC_012962.1 444688 444760 D tRNA-Glu 444688..444760 Photorhabdus asymbiotica 8165246 PAU_t005 tRNA PAU_t005 NC_012962.1 552026 552109 R tRNA-Leu complement(552026..552109) Photorhabdus asymbiotica 8165338 PAU_t006 tRNA PAU_t006 NC_012962.1 552161 552244 R tRNA-Leu complement(552161..552244) Photorhabdus asymbiotica 8169211 PAU_t007 tRNA PAU_t007 NC_012962.1 678741 678814 R tRNA-Met complement(678741..678814) Photorhabdus asymbiotica 8166777 PAU_t008 tRNA PAU_t008 NC_012962.1 678848 678921 R tRNA-Met complement(678848..678921) Photorhabdus asymbiotica 8165367 PAU_t009 tRNA PAU_t009 NC_012962.1 679004 679077 R tRNA-Met complement(679004..679077) Photorhabdus asymbiotica 8169216 PAU_t010 tRNA PAU_t010 NC_012962.1 761451 761524 D tRNA-Ile 761451..761524 Photorhabdus asymbiotica 8165247 PAU_t011 tRNA PAU_t011 NC_012962.1 761657 761729 D tRNA-Ala 761657..761729 Photorhabdus asymbiotica 8169220 PAU_t012 tRNA PAU_t012 NC_012962.1 765206 765279 D tRNA-Asp 765206..765279 Photorhabdus asymbiotica 8169222 PAU_t013 tRNA PAU_t013 NC_012962.1 965994 966067 D tRNA-Asp 965994..966067 Photorhabdus asymbiotica 8168638 PAU_t014 tRNA PAU_t014 NC_012962.1 1150116 1150189 D tRNA-Arg 1150116..1150189 Photorhabdus asymbiotica 8168145 PAU_t015 tRNA PAU_t015 NC_012962.1 1399937 1400007 D tRNA-Gly 1399937..1400007 Photorhabdus asymbiotica 8168943 PAU_t016 tRNA PAU_t016 NC_012962.1 1598137 1598209 R tRNA-Ala complement(1598137..1598209) Photorhabdus asymbiotica 8167963 PAU_t017 tRNA PAU_t017 NC_012962.1 1598276 1598348 R tRNA-Ala complement(1598276..1598348) Photorhabdus asymbiotica 8169231 PAU_t018 tRNA PAU_t018 NC_012962.1 1600300 1600372 D tRNA-Val 1600300..1600372 Photorhabdus asymbiotica 8166399 PAU_t019 tRNA PAU_t019 NC_012962.1 1600406 1600478 D tRNA-Val 1600406..1600478 Photorhabdus asymbiotica 8169233 PAU_t020 tRNA PAU_t020 NC_012962.1 1600525 1600597 D tRNA-Val 1600525..1600597 Photorhabdus asymbiotica 8169234 PAU_t021 tRNA PAU_t021 NC_012962.1 1600642 1600714 D tRNA-Lys 1600642..1600714 Photorhabdus asymbiotica 8169235 PAU_t022 tRNA PAU_t022 NC_012962.1 1600756 1600828 D tRNA-Lys 1600756..1600828 Photorhabdus asymbiotica 8169236 PAU_t023 tRNA PAU_t023 NC_012962.1 1600872 1600941 D tRNA-Lys 1600872..1600941 Photorhabdus asymbiotica 8169237 PAU_t024 tRNA PAU_t024 NC_012962.1 1601053 1601122 D tRNA-Lys 1601053..1601122 Photorhabdus asymbiotica 8169238 PAU_t025 tRNA PAU_t025 NC_012962.1 1601230 1601299 D tRNA-Lys 1601230..1601299 Photorhabdus asymbiotica 8169239 PAU_t026 tRNA PAU_t026 NC_012962.1 1601411 1601480 D tRNA-Lys 1601411..1601480 Photorhabdus asymbiotica 8169240 PAU_t027 tRNA PAU_t027 NC_012962.1 1601588 1601657 D tRNA-Lys 1601588..1601657 Photorhabdus asymbiotica 8169241 PAU_t028 tRNA PAU_t028 NC_012962.1 1603980 1604051 R tRNA-Arg complement(1603980..1604051) Photorhabdus asymbiotica 8167747 PAU_t029 tRNA PAU_t029 NC_012962.1 1797477 1797561 D tRNA-Ser 1797477..1797561 Photorhabdus asymbiotica 8168023 PAU_t030 tRNA PAU_t030 NC_012962.1 1799088 1799160 D tRNA-Thr 1799088..1799160 Photorhabdus asymbiotica 8168024 PAU_t031 tRNA PAU_t031 NC_012962.1 1884087 1884160 R tRNA-Pro complement(1884087..1884160) Photorhabdus asymbiotica 8168456 PAU_t032 tRNA PAU_t032 NC_012962.1 2158908 2158981 R tRNA-Val complement(2158908..2158981) Photorhabdus asymbiotica 8165118 PAU_t033 tRNA PAU_t033 NC_012962.1 2159017 2159090 R tRNA-Val complement(2159017..2159090) Photorhabdus asymbiotica 8166969 PAU_t034 tRNA PAU_t034 NC_012962.1 2265821 2265902 R tRNA-Tyr complement(2265821..2265902) Photorhabdus asymbiotica 8165842 PAU_t035 tRNA PAU_t035 NC_012962.1 2863651 2863737 D tRNA-Ser 2863651..2863737 Photorhabdus asymbiotica 8166617 PAU_t036 tRNA PAU_t036 NC_012962.1 2943502 2943574 D tRNA-Gly 2943502..2943574 Photorhabdus asymbiotica 8168715 PAU_t037 tRNA PAU_t037 NC_012962.1 2943617 2943687 D tRNA-Cys 2943617..2943687 Photorhabdus asymbiotica 8166974 PAU_t038 tRNA PAU_t038 NC_012962.1 2943697 2943780 D tRNA-Leu 2943697..2943780 Photorhabdus asymbiotica 8166975 PAU_t039 tRNA PAU_t039 NC_012962.1 2978649 2978721 R tRNA-Lys complement(2978649..2978721) Photorhabdus asymbiotica 8165921 PAU_t040 tRNA PAU_t040 NC_012962.1 3102485 3102557 D tRNA-Asn 3102485..3102557 Photorhabdus asymbiotica 8164993 PAU_t041 tRNA PAU_t041 NC_012962.1 3104499 3104571 D tRNA-Asn 3104499..3104571 Photorhabdus asymbiotica 8165956 PAU_t042 tRNA PAU_t042 NC_012962.1 3104824 3104896 D tRNA-Asn 3104824..3104896 Photorhabdus asymbiotica 8166979 PAU_t043 tRNA PAU_t043 NC_012962.1 3145261 3145345 R tRNA-Ser complement(3145261..3145345) Photorhabdus asymbiotica 8165976 PAU_t044 tRNA PAU_t044 NC_012962.1 3419047 3419119 R tRNA-Lys complement(3419047..3419119) Photorhabdus asymbiotica 8166447 PAU_t045 tRNA PAU_t045 NC_012962.1 3419222 3419291 R tRNA-Lys complement(3419222..3419291) Photorhabdus asymbiotica 8166983 PAU_t046 tRNA PAU_t046 NC_012962.1 3419398 3419467 R tRNA-Lys complement(3419398..3419467) Photorhabdus asymbiotica 8166984 PAU_t047 tRNA PAU_t047 NC_012962.1 3419574 3419643 R tRNA-Lys complement(3419574..3419643) Photorhabdus asymbiotica 8166985 PAU_t048 tRNA PAU_t048 NC_012962.1 3419750 3419819 R tRNA-Lys complement(3419750..3419819) Photorhabdus asymbiotica 8166986 PAU_t049 tRNA PAU_t049 NC_012962.1 3419926 3419995 R tRNA-Lys complement(3419926..3419995) Photorhabdus asymbiotica 8166987 PAU_t050 tRNA PAU_t050 NC_012962.1 3420102 3420171 R tRNA-Lys complement(3420102..3420171) Photorhabdus asymbiotica 8166988 PAU_t051 tRNA PAU_t051 NC_012962.1 3420278 3420347 R tRNA-Lys complement(3420278..3420347) Photorhabdus asymbiotica 8166989 PAU_t052 tRNA PAU_t052 NC_012962.1 3420453 3420522 R tRNA-Lys complement(3420453..3420522) Photorhabdus asymbiotica 8166990 PAU_t053 tRNA PAU_t053 NC_012962.1 3420629 3420698 R tRNA-Lys complement(3420629..3420698) Photorhabdus asymbiotica 8166991 PAU_t054 tRNA PAU_t054 NC_012962.1 3420805 3420874 R tRNA-Lys complement(3420805..3420874) Photorhabdus asymbiotica 8166992 PAU_t055 tRNA PAU_t055 NC_012962.1 3420917 3420989 R tRNA-Lys complement(3420917..3420989) Photorhabdus asymbiotica 8166993 PAU_t056 tRNA PAU_t056 NC_012962.1 3421029 3421101 R tRNA-Lys complement(3421029..3421101) Photorhabdus asymbiotica 8166994 PAU_t057 tRNA PAU_t057 NC_012962.1 3665225 3665298 D tRNA-Met 3665225..3665298 Photorhabdus asymbiotica 8166904 PAU_t058 tRNA PAU_t058 NC_012962.1 3665308 3665389 D tRNA-Leu 3665308..3665389 Photorhabdus asymbiotica 8166996 PAU_t059 tRNA PAU_t059 NC_012962.1 3665422 3665493 D tRNA-Gln 3665422..3665493 Photorhabdus asymbiotica 8166997 PAU_t060 tRNA PAU_t060 NC_012962.1 3665535 3665606 D tRNA-Gln 3665535..3665606 Photorhabdus asymbiotica 8166998 PAU_t061 tRNA PAU_t061 NC_012962.1 3665634 3665707 D tRNA-Met 3665634..3665707 Photorhabdus asymbiotica 8166999 PAU_t062 tRNA PAU_t062 NC_012962.1 3665717 3665788 D tRNA-Gln 3665717..3665788 Photorhabdus asymbiotica 8167000 PAU_t063 tRNA PAU_t063 NC_012962.1 3756561 3756633 R tRNA-Ala complement(3756561..3756633) Photorhabdus asymbiotica 8167003 PAU_t064 tRNA PAU_t064 NC_012962.1 3756766 3756839 R tRNA-Ile complement(3756766..3756839) Photorhabdus asymbiotica 8167004 PAU_t065 tRNA PAU_t065 NC_012962.1 3781941 3782014 R tRNA-Arg complement(3781941..3782014) Photorhabdus asymbiotica 8169269 PAU_t066 tRNA PAU_t066 NC_012962.1 3782103 3782176 R tRNA-Arg complement(3782103..3782176) Photorhabdus asymbiotica 8167006 PAU_t067 tRNA PAU_t067 NC_012962.1 3782267 3782340 R tRNA-Arg complement(3782267..3782340) Photorhabdus asymbiotica 8167007 PAU_t068 tRNA PAU_t068 NC_012962.1 3782431 3782504 R tRNA-Arg complement(3782431..3782504) Photorhabdus asymbiotica 8167008 PAU_t069 tRNA PAU_t069 NC_012962.1 3782595 3782668 R tRNA-Arg complement(3782595..3782668) Photorhabdus asymbiotica 8167009 PAU_t070 tRNA PAU_t070 NC_012962.1 3782682 3782771 R tRNA-Ser complement(3782682..3782771) Photorhabdus asymbiotica 8167010 PAU_t071 tRNA PAU_t071 NC_012962.1 3865703 3865775 D tRNA-Phe 3865703..3865775 Photorhabdus asymbiotica 8167114 PAU_t072 tRNA PAU_t072 NC_012962.1 4172023 4172096 D tRNA-Met 4172023..4172096 Photorhabdus asymbiotica 8166024 PAU_03765 tRNA PAU_03765 NC_012962.1 4367636 4367708 D tRNA-Phe 4367636..4367708 Photorhabdus asymbiotica 8167816 PAU_t073 tRNA PAU_t073 NC_012962.1 4510057 4510129 R tRNA-Glu complement(4510057..4510129) Photorhabdus asymbiotica 8165255 PAU_t074 tRNA PAU_t074 NC_012962.1 4638417 4638498 R tRNA-Leu complement(4638417..4638498) Photorhabdus asymbiotica 8166166 PAU_t075 tRNA PAU_t075 NC_012962.1 4697068 4697141 R tRNA-Met complement(4697068..4697141) Photorhabdus asymbiotica 8167583 PAU_t076 tRNA PAU_t076 NC_012962.1 4697203 4697288 R tRNA-Leu complement(4697203..4697288) Photorhabdus asymbiotica 8167022 PAU_t077 tRNA PAU_t077 NC_012962.1 4754430 4754502 R tRNA-Gly complement(4754430..4754502) Photorhabdus asymbiotica 8166192 PAU_t078 tRNA PAU_t078 NC_012962.1 4754556 4754628 R tRNA-Gly complement(4754556..4754628) Photorhabdus asymbiotica 8167024 PAU_t079 tRNA PAU_t079 NC_012962.1 4754683 4754755 R tRNA-Gly complement(4754683..4754755) Photorhabdus asymbiotica 8167025 PAU_t080 tRNA PAU_t080 NC_012962.1 4795533 4795606 R tRNA-Pro complement(4795533..4795606) Photorhabdus asymbiotica 8166213 PAU_t081 tRNA PAU_t081 NC_012962.1 4795628 4795711 R tRNA-Leu complement(4795628..4795711) Photorhabdus asymbiotica 8167027 PAU_t082 tRNA PAU_t082 NC_012962.1 4795731 4795803 R tRNA-His complement(4795731..4795803) Photorhabdus asymbiotica 8167028 PAU_t083 tRNA PAU_t083 NC_012962.1 4795883 4795956 R tRNA-Arg complement(4795883..4795956) Photorhabdus asymbiotica 8167029 PAU_t084 tRNA PAU_t084 NC_012962.1 4845104 4845176 R tRNA-Trp complement(4845104..4845176) Photorhabdus asymbiotica 8166227 PAU_t085 tRNA PAU_t085 NC_012962.1 4845188 4845261 R tRNA-Asp complement(4845188..4845261) Photorhabdus asymbiotica 8167031 PAU_t086 tRNA PAU_t086 NC_012962.1 4848780 4848852 R tRNA-Glu complement(4848780..4848852) Photorhabdus asymbiotica 8165256 PAU_t087 tRNA PAU_t087 NC_012962.1 4881322 4881394 R tRNA-Thr complement(4881322..4881394) Photorhabdus asymbiotica 8168377 PAU_t088 tRNA PAU_t088 NC_012962.1 4881404 4881475 R tRNA-Gly complement(4881404..4881475) Photorhabdus asymbiotica 8167036 PAU_t089 tRNA PAU_t089 NC_012962.1 4881584 4881665 R tRNA-Tyr complement(4881584..4881665) Photorhabdus asymbiotica 8167037 PAU_t090 tRNA PAU_t090 NC_012962.1 4881685 4881757 R tRNA-Thr complement(4881685..4881757) Photorhabdus asymbiotica 8167038 PAU_t091 tRNA PAU_t091 NC_012962.1 4886533 4886605 R tRNA-Thr complement(4886533..4886605) Photorhabdus asymbiotica 8167040 PAU_t092 tRNA PAU_t092 NC_012962.1 4890227 4890299 R tRNA-Ala complement(4890227..4890299) Photorhabdus asymbiotica 8165257 PAU_t093 tRNA PAU_t093 NC_012962.1 4890432 4890505 R tRNA-Ile complement(4890432..4890505) Photorhabdus asymbiotica 8167043 PAU_00407n rRNA 16S_rRNA NC_012962.1 54772 56260 D 16S ribosomal RNA 54772..56260 Photorhabdus asymbiotica 8168864 PAU_00407g rRNA 23S_rRNA NC_012962.1 57296 59677 D 23S ribosomal RNA 57296..59677 Photorhabdus asymbiotica 8169202 PAU_r001 rRNA PAU_r001 NC_012962.1 59813 59928 D 5S ribosomal RNA 59813..59928 Photorhabdus asymbiotica 8165252 PAU_00407a rRNA 16S_rRNA NC_012962.1 443069 444557 D 16S ribosomal RNA 443069..444557 Photorhabdus asymbiotica 8168693 PAU_00407h rRNA 23S_rRNA NC_012962.1 445593 447974 D 23S ribosomal RNA 445593..447974 Photorhabdus asymbiotica 8169209 PAU_r002 rRNA PAU_r002 NC_012962.1 448110 448225 D 5S ribosomal RNA 448110..448225 Photorhabdus asymbiotica 8165253 PAU_00407b rRNA 16S_rRNA NC_012962.1 759845 761333 D 16S ribosomal RNA 759845..761333 Photorhabdus asymbiotica 8169246 PAU_00407j rRNA 23S_rRNA NC_012962.1 762534 764915 D 23S ribosomal RNA 762534..764915 Photorhabdus asymbiotica 8169221 PAU_r003 rRNA PAU_r003 NC_012962.1 765037 765152 D 5S ribosomal RNA 765037..765152 Photorhabdus asymbiotica 8165254 PAU_r004 rRNA PAU_r004 NC_012962.1 3753122 3753241 R 5S ribosomal RNA complement(3753122..3753241) Photorhabdus asymbiotica 8168336 PAU_r005 rRNA PAU_r005 NC_012962.1 3753375 3755756 R 23S ribosomal RNA complement(3753375..3755756) Photorhabdus asymbiotica 8167002 PAU_00407d rRNA 16S_rRNA NC_012962.1 3756957 3758445 R 16S ribosomal RNA complement(3756957..3758445) Photorhabdus asymbiotica 8167005 PAU_00407k rRNA 23S_rRNA NC_012962.1 4506843 4509224 D 23S ribosomal RNA 4506843..4509224 Photorhabdus asymbiotica 8169251 PAU_00407c rRNA 16S_rRNA NC_012962.1 4510260 4511748 D 16S ribosomal RNA 4510260..4511748 Photorhabdus asymbiotica 8167018 PAU_r006 rRNA PAU_r006 NC_012962.1 4845315 4845430 R 5S ribosomal RNA complement(4845315..4845430) Photorhabdus asymbiotica 8167032 PAU_00407l rRNA 23S_rRNA NC_012962.1 4845566 4847947 R 23S ribosomal RNA complement(4845566..4847947) Photorhabdus asymbiotica 8167033 PAU_00407e rRNA 16S_rRNA NC_012962.1 4848983 4850471 R 16S ribosomal RNA complement(4848983..4850471) Photorhabdus asymbiotica 8167034 PAU_r007 rRNA PAU_r007 NC_012962.1 4886391 4886506 R 5S ribosomal RNA complement(4886391..4886506) Photorhabdus asymbiotica 8164853 PAU_r008 rRNA PAU_r008 NC_012962.1 4886790 4886905 R 5S ribosomal RNA complement(4886790..4886905) Photorhabdus asymbiotica 8167041 PAU_00407m rRNA 23S_rRNA NC_012962.1 4887041 4889422 R 23S ribosomal RNA complement(4887041..4889422) Photorhabdus asymbiotica 8167042 PAU_00407f rRNA 16S_rRNA NC_012962.1 4890623 4892111 R 16S ribosomal RNA complement(4890623..4892111) Photorhabdus asymbiotica 8167044