-- dump date 20140619_233223 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 123214000001 SEQ_END SEQ_END NC_012439.1 53682 53682 DR NC_012439.1; contig end 53682..53682 Persephonella marina EX-H1 123214000002 SEQ_END SEQ_END NC_012440.1 1930284 1930284 DR NC_012440.1; contig end 1930284..1930284 Persephonella marina EX-H1 YP_002729729.1 CDS PERMA_A0001 NC_012439.1 113 892 D identified by Glimmer3; putative; hypothetical protein 113..892 Persephonella marina EX-H1 7670506 YP_002729730.1 CDS PERMA_A0002 NC_012439.1 972 2924 D identified by Glimmer3; putative; hypothetical protein 972..2924 Persephonella marina EX-H1 7670473 YP_002729731.1 CDS PERMA_A0003 NC_012439.1 2911 3087 D identified by Glimmer3; putative; hypothetical protein 2911..3087 Persephonella marina EX-H1 7670483 YP_002729732.1 CDS PERMA_A0005 NC_012439.1 3084 3803 D identified by match to protein family HMM PF03692; hypothetical protein 3084..3803 Persephonella marina EX-H1 7670471 YP_002729733.1 CDS PERMA_A0004 NC_012439.1 3787 4362 R identified by Glimmer3; putative; hypothetical protein complement(3787..4362) Persephonella marina EX-H1 7670475 YP_002729734.1 CDS PERMA_A0006 NC_012439.1 4349 4894 R identified by Glimmer3; putative; hypothetical protein complement(4349..4894) Persephonella marina EX-H1 7670476 YP_002729735.1 CDS PERMA_A0007 NC_012439.1 4940 5056 R identified by Glimmer3; putative; hypothetical protein complement(4940..5056) Persephonella marina EX-H1 7670502 YP_002729736.1 CDS PERMA_A0008 NC_012439.1 5151 5720 R identified by Glimmer3; putative; hypothetical protein complement(5151..5720) Persephonella marina EX-H1 7670467 YP_002729737.1 CDS PERMA_A0009 NC_012439.1 5879 6067 R identified by Glimmer3; putative; hypothetical protein complement(5879..6067) Persephonella marina EX-H1 7670441 YP_002729738.1 CDS PERMA_A0010 NC_012439.1 6064 6372 R identified by Glimmer3; putative; hypothetical protein complement(6064..6372) Persephonella marina EX-H1 7670450 YP_002729739.1 CDS PERMA_A0011 NC_012439.1 6369 7094 R DNA replication protein DnaC complement(6369..7094) Persephonella marina EX-H1 7670459 YP_002729740.1 CDS PERMA_A0012 NC_012439.1 7112 8011 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; similar to protein aq_aa09; putative integrase/recombinase complement(7112..8011) Persephonella marina EX-H1 7670456 YP_002729741.1 CDS PERMA_A0013 NC_012439.1 8008 8484 R identified by Glimmer3; putative; hypothetical protein complement(8008..8484) Persephonella marina EX-H1 7670439 YP_002729742.1 CDS PERMA_A0014 NC_012439.1 8497 9612 R identified by Glimmer3; putative; hypothetical protein complement(8497..9612) Persephonella marina EX-H1 7670449 YP_002729743.1 CDS PERMA_A0015 NC_012439.1 9609 9824 R identified by Glimmer3; putative; hypothetical protein complement(9609..9824) Persephonella marina EX-H1 7670440 YP_002729744.1 CDS PERMA_A0016 NC_012439.1 9817 10356 R hypothetical protein complement(9817..10356) Persephonella marina EX-H1 7670504 YP_002729745.1 CDS PERMA_A0017 NC_012439.1 10457 10873 R identified by Glimmer3; putative; hypothetical protein complement(10457..10873) Persephonella marina EX-H1 7670444 YP_002729746.1 CDS PERMA_A0018 NC_012439.1 10885 11199 R putative IQ calmodulin-binding motif family protein complement(10885..11199) Persephonella marina EX-H1 7670445 YP_002729747.1 CDS PERMA_A0019 NC_012439.1 11386 13944 R identified by Glimmer3; putative; hypothetical protein complement(11386..13944) Persephonella marina EX-H1 7670451 YP_002729748.1 CDS PERMA_A0020 NC_012439.1 13923 14813 R putative lipoprotein complement(13923..14813) Persephonella marina EX-H1 7670455 YP_002729749.1 CDS PERMA_A0021 NC_012439.1 14776 15339 R identified by Glimmer3; putative; hypothetical protein complement(14776..15339) Persephonella marina EX-H1 7670448 YP_002729750.1 CDS PERMA_A0022 NC_012439.1 15327 16043 R identified by Glimmer3; putative; hypothetical protein complement(15327..16043) Persephonella marina EX-H1 7670457 YP_002729751.1 CDS PERMA_A0023 NC_012439.1 16016 16990 R putative TraU complement(16016..16990) Persephonella marina EX-H1 7670489 YP_002729752.1 CDS PERMA_A0024 NC_012439.1 16974 17585 R identified by Glimmer3; putative; hypothetical protein complement(16974..17585) Persephonella marina EX-H1 7670499 YP_002729753.1 CDS PERMA_A0025 NC_012439.1 17722 17928 D DNA-damage-inducible protein J 17722..17928 Persephonella marina EX-H1 7670443 YP_002729754.1 CDS PERMA_A0026 NC_012439.1 17925 18545 D putative lipoprotein 17925..18545 Persephonella marina EX-H1 7670500 YP_002729755.1 CDS PERMA_A0027 NC_012439.1 18551 19297 D identified by Glimmer3; putative; hypothetical protein 18551..19297 Persephonella marina EX-H1 7670490 YP_002729756.1 CDS PERMA_A0028 NC_012439.1 19300 19581 R identified by Glimmer3; putative; hypothetical protein complement(19300..19581) Persephonella marina EX-H1 7670462 YP_002729757.1 CDS PERMA_A0029 NC_012439.1 19578 19877 R identified by Glimmer3; putative; hypothetical protein complement(19578..19877) Persephonella marina EX-H1 7670452 YP_002729758.1 CDS PERMA_A0030 NC_012439.1 19879 20268 R identified by Glimmer3; putative; hypothetical protein complement(19879..20268) Persephonella marina EX-H1 7670461 YP_002729759.1 CDS PERMA_A0031 NC_012439.1 20265 23756 R hypothetical protein complement(20265..23756) Persephonella marina EX-H1 7670442 YP_002729760.1 CDS PERMA_A0032 NC_012439.1 23761 25164 R identified by Glimmer3; putative; hypothetical protein complement(23761..25164) Persephonella marina EX-H1 7670491 YP_002729761.1 CDS PERMA_A0033 NC_012439.1 25166 26053 R identified by Glimmer3; putative; hypothetical protein complement(25166..26053) Persephonella marina EX-H1 7670477 YP_002729762.1 CDS PERMA_A0034 NC_012439.1 26100 26471 R identified by Glimmer3; putative; hypothetical protein complement(26100..26471) Persephonella marina EX-H1 7670493 YP_002729763.1 CDS PERMA_A0035 NC_012439.1 26443 27828 R identified by Glimmer3; putative; hypothetical protein complement(26443..27828) Persephonella marina EX-H1 7670497 YP_002729764.1 CDS PERMA_A0036 NC_012439.1 27803 28165 R identified by Glimmer3; putative; hypothetical protein complement(27803..28165) Persephonella marina EX-H1 7670494 YP_002729765.1 CDS traC NC_012439.1 28176 30956 R identified by match to protein family HMM TIGR02746; type-IV secretion system protein TraC complement(28176..30956) Persephonella marina EX-H1 7670480 YP_002729766.1 CDS traV NC_012439.1 30946 31461 R identified by match to protein family HMM PF09676; match to protein family HMM TIGR02747; type IV conjugative transfer system protein TraV complement(30946..31461) Persephonella marina EX-H1 7670505 YP_002729767.1 CDS PERMA_A0039 NC_012439.1 31458 32126 R thiol:disulfide interchange protein complement(31458..32126) Persephonella marina EX-H1 7670485 YP_002729768.1 CDS PERMA_A0040 NC_012439.1 32116 32490 R identified by Glimmer3; putative; hypothetical protein complement(32116..32490) Persephonella marina EX-H1 7670503 YP_002729769.1 CDS PERMA_A0041 NC_012439.1 32502 32894 R putative lipoprotein complement(32502..32894) Persephonella marina EX-H1 7670446 YP_002729770.1 CDS PERMA_A0042 NC_012439.1 32848 34098 R identified by match to protein family HMM PF06447; TraB pilus assembly family protein complement(32848..34098) Persephonella marina EX-H1 7670488 YP_002729771.1 CDS PERMA_A0043 NC_012439.1 34079 34552 R identified by match to protein family HMM PF06347; match to protein family HMM PF08239; bacteriolytic enzyme complement(34079..34552) Persephonella marina EX-H1 7670454 YP_002729772.1 CDS PERMA_A0044 NC_012439.1 34549 35307 R identified by Glimmer3; putative; hypothetical protein complement(34549..35307) Persephonella marina EX-H1 7670469 YP_002729773.1 CDS traE NC_012439.1 35294 35821 R identified by match to protein family HMM TIGR02761; type IV conjugative transfer system protein TraE complement(35294..35821) Persephonella marina EX-H1 7670466 YP_002729774.1 CDS traL NC_012439.1 35844 36140 R identified by match to protein family HMM TIGR02762; type IV conjugative transfer system protein TraL complement(35844..36140) Persephonella marina EX-H1 7670479 YP_002729775.1 CDS PERMA_A0047 NC_012439.1 36165 36566 R identified by Glimmer3; putative; hypothetical protein complement(36165..36566) Persephonella marina EX-H1 7670468 YP_002729776.1 CDS PERMA_A0048 NC_012439.1 36738 37430 D identified by Glimmer3; putative; hypothetical protein 36738..37430 Persephonella marina EX-H1 7670496 YP_002729777.1 CDS PERMA_A0049 NC_012439.1 37513 38217 R hypothetical protein complement(37513..38217) Persephonella marina EX-H1 7670438 YP_002729778.1 CDS PERMA_A0050 NC_012439.1 38374 38772 R identified by Glimmer3; putative; hypothetical protein complement(38374..38772) Persephonella marina EX-H1 7670492 YP_002729779.1 CDS PERMA_A0051 NC_012439.1 38777 39106 R identified by Glimmer3; putative; hypothetical protein complement(38777..39106) Persephonella marina EX-H1 7670478 YP_002729780.1 CDS PERMA_A0052 NC_012439.1 39148 39993 R identified by match to protein family HMM PF08401; antirestriction protein complement(39148..39993) Persephonella marina EX-H1 7670481 YP_002729781.1 CDS PERMA_A0053 NC_012439.1 40084 40929 R identified by Glimmer3; putative; hypothetical protein complement(40084..40929) Persephonella marina EX-H1 7670486 YP_002729782.1 CDS PERMA_A0054 NC_012439.1 40948 41088 R identified by Glimmer3; putative; hypothetical protein complement(40948..41088) Persephonella marina EX-H1 7670437 YP_002729783.1 CDS PERMA_A0055 NC_012439.1 41112 41246 R identified by Glimmer3; putative; hypothetical protein complement(41112..41246) Persephonella marina EX-H1 7670472 YP_002729784.1 CDS PERMA_A0056 NC_012439.1 41283 41594 R hypothetical protein complement(41283..41594) Persephonella marina EX-H1 7670487 YP_002729785.1 CDS PERMA_A0057 NC_012439.1 42112 42429 R identified by Glimmer3; putative; hypothetical protein complement(42112..42429) Persephonella marina EX-H1 7670482 YP_002729786.1 CDS PERMA_A0058 NC_012439.1 42449 42715 R identified by Glimmer3; putative; hypothetical protein complement(42449..42715) Persephonella marina EX-H1 7670460 YP_002729787.1 CDS PERMA_A0059 NC_012439.1 42715 45219 R identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) complement(42715..45219) Persephonella marina EX-H1 7670453 YP_002729788.1 CDS PERMA_A0060 NC_012439.1 45315 46865 R identified by match to protein family HMM PF01051; putative replication initiation protein complement(45315..46865) Persephonella marina EX-H1 7670484 YP_002729789.1 CDS PERMA_A0061 NC_012439.1 47365 47637 R identified by Glimmer3; putative; hypothetical protein complement(47365..47637) Persephonella marina EX-H1 7670465 YP_002729790.1 CDS PERMA_A0062 NC_012439.1 47718 48167 D hypothetical protein 47718..48167 Persephonella marina EX-H1 7670495 YP_002729791.1 CDS PERMA_A0063 NC_012439.1 48169 49122 D identified by Glimmer3; putative; hypothetical protein 48169..49122 Persephonella marina EX-H1 7670498 YP_002729792.1 CDS PERMA_A0064 NC_012439.1 49141 49797 D identified by Glimmer3; putative; hypothetical protein 49141..49797 Persephonella marina EX-H1 7670501 YP_002729793.1 CDS PERMA_A0065 NC_012439.1 49810 50340 D identified by Glimmer3; putative; hypothetical protein 49810..50340 Persephonella marina EX-H1 7670447 YP_002729794.1 CDS PERMA_A0066 NC_012439.1 50451 50957 D identified by Glimmer3; putative; hypothetical protein 50451..50957 Persephonella marina EX-H1 7670470 YP_002729795.1 CDS PERMA_A0067 NC_012439.1 50944 51339 D hypothetical protein 50944..51339 Persephonella marina EX-H1 7670464 YP_002729796.1 CDS PERMA_A0068 NC_012439.1 51756 52598 D hypothetical protein 51756..52598 Persephonella marina EX-H1 7670474 YP_002729797.1 CDS PERMA_A0069 NC_012439.1 52591 52761 D identified by Glimmer3; putative; hypothetical protein 52591..52761 Persephonella marina EX-H1 7670463 YP_002729798.1 CDS PERMA_A0070 NC_012439.1 52739 53080 D identified by Glimmer3; putative; hypothetical protein 52739..53080 Persephonella marina EX-H1 7670458 YP_002729799.1 CDS groS_1 NC_012440.1 6 299 R identified by match to protein family HMM PF00166; chaperonin GroS complement(6..299) Persephonella marina EX-H1 7674950 YP_002729800.1 CDS PERMA_0002 NC_012440.1 404 3004 R identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF08335; (Protein-PII) uridylyltransferase complement(404..3004) Persephonella marina EX-H1 7675584 YP_002729801.1 CDS PERMA_0003 NC_012440.1 3009 4571 R identified by match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM PF08676; match to protein family HMM TIGR00585; DNA mismatch repair protein MutL complement(3009..4571) Persephonella marina EX-H1 7674543 YP_002729802.1 CDS PERMA_0004 NC_012440.1 4660 4995 D hypothetical protein 4660..4995 Persephonella marina EX-H1 7675537 YP_002729803.1 CDS PERMA_0005 NC_012440.1 5006 6517 R identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; match to protein family HMM TIGR03701; menaquinone biosynthesis decarboxylase, family complement(5006..6517) Persephonella marina EX-H1 7675403 YP_002729804.1 CDS PERMA_0006 NC_012440.1 6667 6804 D identified by Glimmer3; hypothetical protein 6667..6804 Persephonella marina EX-H1 7675820 YP_002729805.1 CDS PERMA_0007 NC_012440.1 7012 7878 D identified by match to protein family HMM PF02706; chain length determinant protein 7012..7878 Persephonella marina EX-H1 7674795 YP_002729806.1 CDS PERMA_0008 NC_012440.1 7881 10199 R identified by match to protein family HMM PF05362; peptidase S16, lon domain protein complement(7881..10199) Persephonella marina EX-H1 7675136 YP_002729807.1 CDS PERMA_0009 NC_012440.1 10199 10585 R hypothetical protein complement(10199..10585) Persephonella marina EX-H1 7674396 YP_002729808.1 CDS purN NC_012440.1 10665 11312 R identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase complement(10665..11312) Persephonella marina EX-H1 7675710 YP_002729809.1 CDS PERMA_0011 NC_012440.1 11350 13422 R identified by match to protein family HMM PF04784; hypothetical protein complement(11350..13422) Persephonella marina EX-H1 7674743 YP_002729810.1 CDS purM NC_012440.1 13442 14464 R identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878; phosphoribosylformylglycinamidine cyclo-ligase complement(13442..14464) Persephonella marina EX-H1 7675190 YP_002729811.1 CDS PERMA_0014 NC_012440.1 14530 15078 D THEP1; Aquifex aeolicus protein exhibits ATPase and GTPase activity; crystal structure shows RecA-like fold; NTPase 14530..15078 Persephonella marina EX-H1 7675926 YP_002729812.1 CDS PERMA_0013 NC_012440.1 15042 15746 R identified by match to protein family HMM PF00795; N-carbamoylputrescine amidase complement(15042..15746) Persephonella marina EX-H1 7675969 YP_002729813.1 CDS PERMA_0015 NC_012440.1 15938 16336 R identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein complement(15938..16336) Persephonella marina EX-H1 7675361 YP_002729814.1 CDS PERMA_0016 NC_012440.1 16329 17015 R identified by match to protein family HMM PF00156; phosphoribosyltransferase complement(16329..17015) Persephonella marina EX-H1 7675661 YP_002729815.1 CDS dtd NC_012440.1 17056 17499 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 17056..17499 Persephonella marina EX-H1 7676041 YP_002729816.1 CDS PERMA_0017 NC_012440.1 17485 18951 R identified by match to protein family HMM PF00982; alpha,alpha-trehalose-phosphate synthase [UDP-forming] (Trehalose-6-phosphate synthase) (UDP-glucose-glucosephosphateglucosyltransferase) complement(17485..18951) Persephonella marina EX-H1 7675526 YP_002729817.1 CDS engA NC_012440.1 18995 20338 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(18995..20338) Persephonella marina EX-H1 7674892 YP_002729818.1 CDS PERMA_0020 NC_012440.1 20420 20854 D identified by Glimmer3; hypothetical protein 20420..20854 Persephonella marina EX-H1 7675899 YP_002729819.1 CDS mviN NC_012440.1 20880 22394 D identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 20880..22394 Persephonella marina EX-H1 7674889 YP_002729820.1 CDS PERMA_0023 NC_012440.1 22479 23495 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 22479..23495 Persephonella marina EX-H1 7675232 YP_002729821.1 CDS pyk NC_012440.1 23485 24924 R identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(23485..24924) Persephonella marina EX-H1 7675960 YP_002729822.1 CDS PERMA_0024 NC_012440.1 25030 25422 D identified by match to protein family HMM PF01475; ferric uptake regulator, Fur family 25030..25422 Persephonella marina EX-H1 7674822 YP_002729823.1 CDS PERMA_0025 NC_012440.1 25426 26016 D identified by match to protein family HMM PF00174; molybdopterin binding oxidoreductase 25426..26016 Persephonella marina EX-H1 7675075 YP_002729824.1 CDS PERMA_0027 NC_012440.1 26013 27074 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; succinyl-diaminopimelate desuccinylase 26013..27074 Persephonella marina EX-H1 7674214 YP_002729825.1 CDS PERMA_0026 NC_012440.1 27038 27526 R identified by match to protein family HMM PF00583; N-acetyltransferase, gnat family complement(27038..27526) Persephonella marina EX-H1 7674639 YP_002729826.1 CDS PERMA_0028 NC_012440.1 27686 29002 D L-lysine 2,3-aminomutase 27686..29002 Persephonella marina EX-H1 7675235 YP_002729827.1 CDS guaA NC_012440.1 29016 30554 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 29016..30554 Persephonella marina EX-H1 7674977 YP_002729828.1 CDS PERMA_0030 NC_012440.1 30554 30928 D identified by Glimmer3; hypothetical protein 30554..30928 Persephonella marina EX-H1 7674322 YP_002729829.1 CDS PERMA_0031 NC_012440.1 30925 31614 D identified by match to protein family HMM PF00106; alcohol dehydrogenase 30925..31614 Persephonella marina EX-H1 7674577 YP_002729830.1 CDS PERMA_0032 NC_012440.1 31670 31990 D hypothetical protein 31670..31990 Persephonella marina EX-H1 7674566 YP_002729831.1 CDS PERMA_0033 NC_012440.1 31981 32823 D identified by match to protein family HMM PF01992; ATP synthase subunit C 31981..32823 Persephonella marina EX-H1 7675515 YP_002729832.1 CDS PERMA_0034 NC_012440.1 32826 34613 D identified by match to protein family HMM PF01496; V-type sodium ATP synthase subunit I 32826..34613 Persephonella marina EX-H1 7675857 YP_002729833.1 CDS PERMA_0035 NC_012440.1 34660 34932 D identified by match to protein family HMM PF00137; ATP synthase subunit C 34660..34932 Persephonella marina EX-H1 7676198 YP_002729834.1 CDS PERMA_0036 NC_012440.1 34929 35231 D identified by match to protein family HMM PF01990; ATP synthase subunit F 34929..35231 Persephonella marina EX-H1 7674697 YP_002729835.1 CDS PERMA_0037 NC_012440.1 35239 35745 D identified by Glimmer3; hypothetical protein 35239..35745 Persephonella marina EX-H1 7675490 YP_002729836.1 CDS PERMA_0038 NC_012440.1 35749 37479 D identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; V-type ATP synthase alpha chain (V-type ATPase subunitA) 35749..37479 Persephonella marina EX-H1 7674782 YP_002729837.1 CDS PERMA_0039 NC_012440.1 37482 38825 D produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 37482..38825 Persephonella marina EX-H1 7674507 YP_002729838.1 CDS PERMA_0040 NC_012440.1 38822 39439 D identified by match to protein family HMM PF01813; match to protein family HMM TIGR00309; V-type ATPase, D subunit 38822..39439 Persephonella marina EX-H1 7675451 YP_002729839.1 CDS PERMA_0041 NC_012440.1 39512 41164 D identified by match to protein family HMM PF00575; ribosomal protein S01 39512..41164 Persephonella marina EX-H1 7674218 YP_002729840.1 CDS PERMA_0042 NC_012440.1 41161 42159 D identified by match to protein family HMM PF01699; sodium/calcium exchanger 41161..42159 Persephonella marina EX-H1 7675180 YP_002729841.1 CDS accA NC_012440.1 42164 43108 D identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase, carboxyl transferase, alphsubunit A 42164..43108 Persephonella marina EX-H1 7674749 YP_002729842.1 CDS PERMA_0045 NC_012440.1 43105 44103 D identified by match to protein family HMM PF01075; ADP-heptose:LPS heptosyltransferase II 43105..44103 Persephonella marina EX-H1 7674797 YP_002729843.1 CDS PERMA_0044 NC_012440.1 44098 44517 R identified by match to protein family HMM PF00571; hypothetical protein complement(44098..44517) Persephonella marina EX-H1 7675056 YP_002729844.1 CDS PERMA_0047 NC_012440.1 44591 45796 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; thermostable carboxypeptidase 1 44591..45796 Persephonella marina EX-H1 7675822 YP_002729845.1 CDS PERMA_0046 NC_012440.1 45793 47067 R ATPase complement(45793..47067) Persephonella marina EX-H1 7674454 YP_002729846.1 CDS PERMA_0048 NC_012440.1 47453 47662 D membrane or secreted protein 47453..47662 Persephonella marina EX-H1 7674268 YP_002729847.1 CDS PERMA_0049 NC_012440.1 47734 49431 D identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480; copper resistance protein A 47734..49431 Persephonella marina EX-H1 7675728 YP_002729848.1 CDS PERMA_0050 NC_012440.1 49444 50175 D identified by match to protein family HMM PF05275; copper resistance protein B 49444..50175 Persephonella marina EX-H1 7675995 YP_002729849.1 CDS rplU NC_012440.1 50271 50564 D identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 50271..50564 Persephonella marina EX-H1 7674961 YP_002729850.1 CDS rpmA NC_012440.1 50580 50837 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 50580..50837 Persephonella marina EX-H1 7675917 YP_002729851.1 CDS mrdB NC_012440.1 50859 51953 R identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; rod shape-determining protein RodA complement(50859..51953) Persephonella marina EX-H1 7674460 YP_002729852.1 CDS mrdA NC_012440.1 51940 53733 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 complement(51940..53733) Persephonella marina EX-H1 7675834 YP_002729853.1 CDS PERMA_0055 NC_012440.1 53714 54148 R identified by Glimmer3; hypothetical protein complement(53714..54148) Persephonella marina EX-H1 7674837 YP_002729854.1 CDS mreC NC_012440.1 54166 54981 R identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219; rod shape-determining protein MreC complement(54166..54981) Persephonella marina EX-H1 7675148 YP_002729855.1 CDS PERMA_0057 NC_012440.1 54987 56027 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(54987..56027) Persephonella marina EX-H1 7675978 YP_002729856.1 CDS dapA NC_012440.1 56109 56990 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 56109..56990 Persephonella marina EX-H1 7675414 YP_002729857.1 CDS PERMA_0059 NC_012440.1 57112 57927 D identified by match to protein family HMM PF01408; oxidoreductase family, NAD-binding Rossmann fold protein 57112..57927 Persephonella marina EX-H1 7676018 YP_002729858.1 CDS PERMA_0060 NC_012440.1 57939 58997 D identified by match to protein family HMM PF01041; transcriptional regulator 57939..58997 Persephonella marina EX-H1 7674368 YP_002729859.1 CDS ribH NC_012440.1 59041 59505 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; betsubunit A of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 59041..59505 Persephonella marina EX-H1 7674675 YP_002729860.1 CDS nusB NC_012440.1 59505 59933 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 59505..59933 Persephonella marina EX-H1 7675455 YP_002729861.1 CDS PERMA_0064 NC_012440.1 59930 60658 D identified by match to protein family HMM PF00149; metallophosphoesterase 59930..60658 Persephonella marina EX-H1 7676174 YP_002729862.1 CDS PERMA_0063 NC_012440.1 60645 60827 R identified by Glimmer3; hypothetical protein complement(60645..60827) Persephonella marina EX-H1 7675344 YP_002729863.1 CDS yajC NC_012440.1 60918 61211 R identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase, YajC subunit complement(60918..61211) Persephonella marina EX-H1 7675626 YP_002729864.1 CDS PERMA_0066 NC_012440.1 61372 62529 D identified by match to protein family HMM PF05036; hypothetical protein 61372..62529 Persephonella marina EX-H1 7675533 YP_002729865.1 CDS PERMA_0067 NC_012440.1 62597 62926 D ferredoxin, 2Fe-2S (2FeCpFd) 62597..62926 Persephonella marina EX-H1 7676189 YP_002729866.1 CDS metF NC_012440.1 62948 63829 R identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase complement(62948..63829) Persephonella marina EX-H1 7675761 YP_002729867.1 CDS PERMA_0069 NC_012440.1 63893 65554 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(63893..65554) Persephonella marina EX-H1 7674578 YP_002729868.1 CDS PERMA_0070 NC_012440.1 65558 66106 R identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase complement(65558..66106) Persephonella marina EX-H1 7674742 YP_002729869.1 CDS pheT NC_012440.1 66358 68769 R identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; phenylalanyl-tRNA synthetase, betsubunit A complement(66358..68769) Persephonella marina EX-H1 7675467 YP_002729870.1 CDS pheS NC_012440.1 68766 69800 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(68766..69800) Persephonella marina EX-H1 7676053 YP_002729871.1 CDS rplT NC_012440.1 69816 70181 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(69816..70181) Persephonella marina EX-H1 7674246 YP_002729872.1 CDS rpmI NC_012440.1 70204 70410 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(70204..70410) Persephonella marina EX-H1 7675977 YP_002729873.1 CDS PERMA_0075 NC_012440.1 70555 71376 D hypothetical protein 70555..71376 Persephonella marina EX-H1 7675176 YP_002729874.1 CDS PERMA_0077 NC_012440.1 71373 72305 D hypothetical protein 71373..72305 Persephonella marina EX-H1 7675965 YP_002729875.1 CDS rdgB NC_012440.1 72274 72897 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(72274..72897) Persephonella marina EX-H1 7676100 YP_002729876.1 CDS ruvC NC_012440.1 72907 73374 R identified by match to protein family HMM PF02075; match to protein family HMM TIGR00228; crossover junction endodeoxyribonuclease RuvC complement(72907..73374) Persephonella marina EX-H1 7674430 YP_002729877.1 CDS PERMA_0079 NC_012440.1 73374 74126 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(73374..74126) Persephonella marina EX-H1 7675040 YP_002729878.1 CDS PERMA_0080 NC_012440.1 74204 74845 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; endonuclease III 74204..74845 Persephonella marina EX-H1 7675517 YP_002729879.1 CDS PERMA_0081 NC_012440.1 74866 75465 D identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 2-acylglycerophosphoethanolamine acyltransferase 74866..75465 Persephonella marina EX-H1 7676184 YP_002729880.1 CDS ispH NC_012440.1 75475 76329 D identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 75475..76329 Persephonella marina EX-H1 7675742 YP_002729881.1 CDS PERMA_0083 NC_012440.1 76343 77416 D identified by match to protein family HMM PF07238; type IV pilus assembly protein PilZ 76343..77416 Persephonella marina EX-H1 7675073 YP_002729882.1 CDS PERMA_0084 NC_012440.1 77423 78184 D identified by match to protein family HMM PF01618; chemotaxis protein PomA 77423..78184 Persephonella marina EX-H1 7674967 YP_002729883.1 CDS PERMA_0085 NC_012440.1 78188 78883 D identified by match to protein family HMM PF00691; flagellar motor protein MotB 78188..78883 Persephonella marina EX-H1 7675665 YP_002729884.1 CDS PERMA_0086 NC_012440.1 78895 79602 D identified by match to protein family HMM PF00691; OmpA family protein 78895..79602 Persephonella marina EX-H1 7675956 YP_002729885.1 CDS PERMA_0087 NC_012440.1 79620 80804 D identified by match to protein family HMM PF02475; methyltransferase 79620..80804 Persephonella marina EX-H1 7674910 YP_002729886.1 CDS prmC NC_012440.1 80794 81636 D identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534; protein-(glutamine-N5) methyltransferase, release factor-specific 80794..81636 Persephonella marina EX-H1 7676015 YP_002729887.1 CDS murA NC_012440.1 81629 82915 D identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 81629..82915 Persephonella marina EX-H1 7675686 YP_002729888.1 CDS rpoD NC_012440.1 82896 83741 R identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; RNA polymerase sigma-70 factor complement(82896..83741) Persephonella marina EX-H1 7674651 YP_002729889.1 CDS aspS NC_012440.1 83885 85702 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(83885..85702) Persephonella marina EX-H1 7675213 YP_002729890.1 CDS PERMA_0093 NC_012440.1 85787 86350 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR Domain containing protein 85787..86350 Persephonella marina EX-H1 7674413 YP_002729891.1 CDS PERMA_0092 NC_012440.1 86347 86571 R identified by Glimmer3; hypothetical protein complement(86347..86571) Persephonella marina EX-H1 7674292 YP_002729892.1 CDS PERMA_0094 NC_012440.1 86624 87394 R histidinol-phosphate phosphatase complement(86624..87394) Persephonella marina EX-H1 7674445 YP_002729893.1 CDS argH NC_012440.1 87454 88827 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(87454..88827) Persephonella marina EX-H1 7675865 YP_002729894.1 CDS PERMA_0097 NC_012440.1 88908 90437 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator 88908..90437 Persephonella marina EX-H1 7674274 YP_002729895.1 CDS PERMA_0096 NC_012440.1 90405 91601 R identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence-damage inducible protein complement(90405..91601) Persephonella marina EX-H1 7675773 YP_002729896.1 CDS PERMA_0098 NC_012440.1 91598 92701 R identified by match to protein family HMM PF00571; match to protein family HMM PF02163; zinc metalloprotease Sll0528 complement(91598..92701) Persephonella marina EX-H1 7675695 YP_002729897.1 CDS PERMA_0099 NC_012440.1 92720 93223 R hypothetical protein complement(92720..93223) Persephonella marina EX-H1 7675052 YP_002729898.1 CDS PERMA_0100 NC_012440.1 93234 94094 R identified by match to protein family HMM PF00691; OmpA/MotB complement(93234..94094) Persephonella marina EX-H1 7675168 YP_002729899.1 CDS PERMA_0101 NC_012440.1 94097 94384 R identified by Glimmer3; hypothetical protein complement(94097..94384) Persephonella marina EX-H1 7675150 YP_002729900.1 CDS ftsY NC_012440.1 94493 95407 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 94493..95407 Persephonella marina EX-H1 7674647 YP_002729901.1 CDS ggt NC_012440.1 95404 96921 R identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltransferase complement(95404..96921) Persephonella marina EX-H1 7674320 YP_002729902.1 CDS PERMA_0104 NC_012440.1 96918 98006 R identified by match to protein family HMM PF04107; match to protein family HMM TIGR02050; carboxylate-amine ligase Francci3_0693 complement(96918..98006) Persephonella marina EX-H1 7676003 YP_002729903.1 CDS PERMA_0105 NC_012440.1 97996 99264 R identified by match to protein family HMM PF01957; nodulation competitiveness protein NfeD complement(97996..99264) Persephonella marina EX-H1 7675258 YP_002729904.1 CDS cooS NC_012440.1 99513 101399 D identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702; carbon-monoxide dehydrogenase, catalytic subunit 99513..101399 Persephonella marina EX-H1 7674536 YP_002729905.1 CDS PERMA_0107 NC_012440.1 101419 102105 R identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; pyridoxal phosphate enzyme, YggS family complement(101419..102105) Persephonella marina EX-H1 7674374 YP_002729906.1 CDS gcvH NC_012440.1 102165 102578 D identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527; glycine cleavage system H protein 102165..102578 Persephonella marina EX-H1 7674228 YP_002729907.1 CDS PERMA_0109 NC_012440.1 102580 103110 D identified by match to protein family HMM PF01842; glycine cleavage system regulatory protein 102580..103110 Persephonella marina EX-H1 7675437 YP_002729908.1 CDS def_1 NC_012440.1 103110 103619 D identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 103110..103619 Persephonella marina EX-H1 7675904 YP_002729909.1 CDS PERMA_0111 NC_012440.1 103678 104730 D hypothetical protein 103678..104730 Persephonella marina EX-H1 7675035 YP_002729910.1 CDS PERMA_0112 NC_012440.1 104727 105005 D flagellar biosynthetic protein FlhB 104727..105005 Persephonella marina EX-H1 7674230 YP_002729911.1 CDS PERMA_0113 NC_012440.1 105002 105811 D identified by match to protein family HMM PF01875; hypothetical protein 105002..105811 Persephonella marina EX-H1 7674875 YP_002729912.1 CDS PERMA_0114 NC_012440.1 105814 106404 D identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296; hypothetical protein 105814..106404 Persephonella marina EX-H1 7674816 YP_002729913.1 CDS PERMA_0115 NC_012440.1 106429 106854 R identified by match to protein family HMM PF00210; bacterioferritin (BFR) (cytochrome B-557.5) complement(106429..106854) Persephonella marina EX-H1 7675791 YP_002729914.1 CDS PERMA_0116 NC_012440.1 106921 107544 R identified by match to protein family HMM PF00484; carbonate dehydratase complement(106921..107544) Persephonella marina EX-H1 7674996 YP_002729915.1 CDS dapD NC_012440.1 107549 108364 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(107549..108364) Persephonella marina EX-H1 7674302 YP_002729916.1 CDS PERMA_0118 NC_012440.1 108388 108858 R hypothetical protein complement(108388..108858) Persephonella marina EX-H1 7675220 YP_002729917.1 CDS PERMA_0119 NC_012440.1 108935 109606 D hypothetical protein 108935..109606 Persephonella marina EX-H1 7674611 YP_002729918.1 CDS PERMA_0120 NC_012440.1 109644 110102 D hypothetical protein 109644..110102 Persephonella marina EX-H1 7675747 YP_002729919.1 CDS PERMA_0121 NC_012440.1 110234 111454 D identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter NrgA (Membrane protein nrgA) (Protein amtB) 110234..111454 Persephonella marina EX-H1 7674312 YP_002729920.1 CDS PERMA_0122 NC_012440.1 111466 112239 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein 111466..112239 Persephonella marina EX-H1 7675332 YP_002729921.1 CDS PERMA_0124 NC_012440.1 112244 113422 D identified by match to protein family HMM PF08668; diguanylate phosphodiesterase 112244..113422 Persephonella marina EX-H1 7674490 YP_002729922.1 CDS pdxA NC_012440.1 113409 114368 R identified by match to protein family HMM PF04166; match to protein family HMM TIGR00557; 4-hydroxythreonine-4-phosphate dehydrogenase complement(113409..114368) Persephonella marina EX-H1 7675488 YP_002729923.1 CDS PERMA_0125 NC_012440.1 114372 114614 R identified by Glimmer3; hypothetical protein complement(114372..114614) Persephonella marina EX-H1 7675351 YP_002729924.1 CDS PERMA_0126 NC_012440.1 114608 114958 R identified by Glimmer3; hypothetical protein complement(114608..114958) Persephonella marina EX-H1 7674280 YP_002729925.1 CDS PERMA_0127 NC_012440.1 114968 115252 R DsrE family protein complement(114968..115252) Persephonella marina EX-H1 7674737 YP_002729926.1 CDS PERMA_0128 NC_012440.1 115267 115509 R identified by match to protein family HMM PF01206; SirA family protein complement(115267..115509) Persephonella marina EX-H1 7674905 YP_002729927.1 CDS PERMA_0129 NC_012440.1 115520 116338 R identified by match to protein family HMM PF00899; match to protein family HMM PF05237; molybdenum cofactor synthesis protein 3 (Molybdopterinsynthase sulfurylase) (MPT synthase sulfurylase) complement(115520..116338) Persephonella marina EX-H1 7675885 YP_002729928.1 CDS PERMA_0130 NC_012440.1 116414 117556 R identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase complement(116414..117556) Persephonella marina EX-H1 7674422 YP_002729929.1 CDS PERMA_0131 NC_012440.1 117559 117990 R identified by Glimmer3; hypothetical protein complement(117559..117990) Persephonella marina EX-H1 7674557 YP_002729930.1 CDS recJ NC_012440.1 118090 119790 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 118090..119790 Persephonella marina EX-H1 7674361 YP_002729931.1 CDS ahpC NC_012440.1 119872 120474 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; alkyl hydroperoxide reductase, C subunit 119872..120474 Persephonella marina EX-H1 7674559 YP_002729932.1 CDS PERMA_0134 NC_012440.1 121421 121636 D identified by Glimmer3; hypothetical protein 121421..121636 Persephonella marina EX-H1 7674355 YP_002729933.1 CDS rpsU NC_012440.1 121683 121883 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 121683..121883 Persephonella marina EX-H1 7675660 YP_002729934.1 CDS PERMA_0136 NC_012440.1 121894 122340 D identified by match to protein family HMM PF02637; match to protein family HMM PF09424; GatB/Yqey domain protein 121894..122340 Persephonella marina EX-H1 7675957 YP_002729935.1 CDS cvpA NC_012440.1 122343 122777 D identified by match to protein family HMM PF02674; CvpA family protein 122343..122777 Persephonella marina EX-H1 7675158 YP_002729936.1 CDS PERMA_0139 NC_012440.1 122765 123166 D identified by Glimmer3; hypothetical protein 122765..123166 Persephonella marina EX-H1 7675894 YP_002729937.1 CDS PERMA_0138 NC_012440.1 123163 123642 R hypothetical protein complement(123163..123642) Persephonella marina EX-H1 7675918 YP_002729938.1 CDS rseP NC_012440.1 123679 125001 R identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; RIP metalloprotease RseP complement(123679..125001) Persephonella marina EX-H1 7674668 YP_002729939.1 CDS dxr NC_012440.1 125013 126134 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(125013..126134) Persephonella marina EX-H1 7674584 YP_002729940.1 CDS PERMA_0142 NC_012440.1 126145 126750 R hypothetical protein complement(126145..126750) Persephonella marina EX-H1 7675037 YP_002729941.1 CDS PERMA_0143 NC_012440.1 126834 127535 R identified by match to protein family HMM PF00037; NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i subunit i 2) (ndh-1 subunit i 2) complement(126834..127535) Persephonella marina EX-H1 7674316 YP_002729942.1 CDS PERMA_0144 NC_012440.1 127551 129284 R identified by match to protein family HMM PF00329; match to protein family HMM PF00346; NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i subunit c/d) (ndh-1 subunit c/d) complement(127551..129284) Persephonella marina EX-H1 7674744 YP_002729943.1 CDS pgpA NC_012440.1 129403 129915 D identified by match to protein family HMM PF04608; phosphatidylglycerophosphatase A 129403..129915 Persephonella marina EX-H1 7674632 YP_002729944.1 CDS PERMA_0145 NC_012440.1 129912 130214 R copy number protein (ORF4) complement(129912..130214) Persephonella marina EX-H1 7675060 YP_002729945.1 CDS PERMA_0148 NC_012440.1 130310 131323 D identified by match to protein family HMM PF04371; agmatine deiminase (Agmatine iminohydrolase) 130310..131323 Persephonella marina EX-H1 7675267 YP_002729946.1 CDS PERMA_0147 NC_012440.1 131274 131888 R identified by match to protein family HMM PF08239; SH3 domain family protein complement(131274..131888) Persephonella marina EX-H1 7674489 YP_002729947.1 CDS PERMA_0149 NC_012440.1 131885 132349 R identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase complement(131885..132349) Persephonella marina EX-H1 7674658 YP_002729948.1 CDS cmk NC_012440.1 132365 133021 R identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase complement(132365..133021) Persephonella marina EX-H1 7676193 YP_002729949.1 CDS PERMA_0151 NC_012440.1 133023 134948 R identified by match to protein family HMM PF00723; glucan 1,4 alpha-glucosidase complement(133023..134948) Persephonella marina EX-H1 7675844 YP_002729950.1 CDS moaD NC_012440.1 134951 135196 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682; match to protein family HMM TIGR01687; molybdopterin converting factor, subunit 1 complement(134951..135196) Persephonella marina EX-H1 7674794 YP_002729951.1 CDS PERMA_0153 NC_012440.1 135186 135851 R identified by match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR01508; diaminohydroxyphosphoribosylaminopyrimidine reductase complement(135186..135851) Persephonella marina EX-H1 7675498 YP_002729952.1 CDS PERMA_0154 NC_012440.1 135901 136524 R identified by match to protein family HMM PF01066; CDP-alcohol phosphatidyltransferase complement(135901..136524) Persephonella marina EX-H1 7674760 YP_002729953.1 CDS ilvC NC_012440.1 136535 137533 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(136535..137533) Persephonella marina EX-H1 7675939 YP_002729954.1 CDS PERMA_0156 NC_012440.1 137578 138198 R identified by Glimmer3; hypothetical protein complement(137578..138198) Persephonella marina EX-H1 7675412 YP_002729955.1 CDS ilvN NC_012440.1 138195 138761 R identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119; acetolactate synthase, small subunit complement(138195..138761) Persephonella marina EX-H1 7674448 YP_002729956.1 CDS ilvB NC_012440.1 138783 140528 R identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase, large subunit, biosynthetic type complement(138783..140528) Persephonella marina EX-H1 7675884 YP_002729957.1 CDS trmFO NC_012440.1 140626 141936 R TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid complement(140626..141936) Persephonella marina EX-H1 7675142 YP_002729958.1 CDS PERMA_0160 NC_012440.1 141944 143152 R identified by match to protein family HMM PF00999; GerN complement(141944..143152) Persephonella marina EX-H1 7674404 YP_002729959.1 CDS moaE NC_012440.1 143230 143643 R identified by match to protein family HMM PF02391; molybdopterin converting factor, subunit 2 complement(143230..143643) Persephonella marina EX-H1 7674222 YP_002729960.1 CDS PERMA_0162 NC_012440.1 143653 144174 R lipoprotein complement(143653..144174) Persephonella marina EX-H1 7675342 YP_002729961.1 CDS PERMA_0163 NC_012440.1 144189 145364 R identified by match to protein family HMM PF00155; aspartate aminotransferase complement(144189..145364) Persephonella marina EX-H1 7675472 YP_002729962.1 CDS PERMA_0164 NC_012440.1 145449 146267 D identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 145449..146267 Persephonella marina EX-H1 7675736 YP_002729963.1 CDS PERMA_0166 NC_012440.1 146270 147160 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 146270..147160 Persephonella marina EX-H1 7675222 YP_002729964.1 CDS PERMA_0165 NC_012440.1 147140 148105 R identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; arabinose 5-phosphate isomerase complement(147140..148105) Persephonella marina EX-H1 7674704 YP_002729965.1 CDS PERMA_0167 NC_012440.1 148095 149015 R identified by match to protein family HMM PF04468; PSP1 domain protein complement(148095..149015) Persephonella marina EX-H1 7674764 YP_002729966.1 CDS PERMA_0168 NC_012440.1 149025 149954 R DNA polymerase III, delta prime subunit complement(149025..149954) Persephonella marina EX-H1 7674180 YP_002729967.1 CDS tmk NC_012440.1 149959 150609 R identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase complement(149959..150609) Persephonella marina EX-H1 7674362 YP_002729968.1 CDS PERMA_0171 NC_012440.1 150673 150948 D identified by match to protein family HMM PF01106; match to protein family HMM PF01883; hypothetical protein 150673..150948 Persephonella marina EX-H1 7675130 YP_002729969.1 CDS PERMA_0170 NC_012440.1 150938 153673 R identified by match to protein family HMM PF03710; glutamate ammonia ligase adenylyl-transferase complement(150938..153673) Persephonella marina EX-H1 7675469 YP_002729970.1 CDS PERMA_0172 NC_012440.1 153729 154790 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; protease do 153729..154790 Persephonella marina EX-H1 7674655 YP_002729971.1 CDS PERMA_0173 NC_012440.1 154862 155719 D identified by match to protein family HMM PF00140; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43) 154862..155719 Persephonella marina EX-H1 7675744 YP_002729972.1 CDS PERMA_0174 NC_012440.1 155723 155902 R hypothetical protein complement(155723..155902) Persephonella marina EX-H1 7675113 YP_002729973.1 CDS PERMA_0175 NC_012440.1 155884 156354 R identified by match to protein family HMM PF09335; hypothetical protein complement(155884..156354) Persephonella marina EX-H1 7676029 YP_002729974.1 CDS tyrS NC_012440.1 156371 157603 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(156371..157603) Persephonella marina EX-H1 7675615 YP_002729975.1 CDS PERMA_0177 NC_012440.1 157722 158888 D identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase (acoat) 157722..158888 Persephonella marina EX-H1 7675285 YP_002729976.1 CDS rnr NC_012440.1 158942 161056 D identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 158942..161056 Persephonella marina EX-H1 7674786 YP_002729977.1 CDS PERMA_0179 NC_012440.1 161186 161626 D identified by match to protein family HMM PF00430; ATP synthase F0 subunit b 161186..161626 Persephonella marina EX-H1 7675648 YP_002729978.1 CDS PERMA_0180 NC_012440.1 161623 162159 D identified by match to protein family HMM PF00430; ATP synthase F0 subunit b 161623..162159 Persephonella marina EX-H1 7675508 YP_002729979.1 CDS atpH NC_012440.1 162172 162720 D identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1 deltsubunit A 162172..162720 Persephonella marina EX-H1 7676126 YP_002729980.1 CDS atpA_1 NC_012440.1 162758 164272 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 162758..164272 Persephonella marina EX-H1 7675441 YP_002729981.1 CDS atpG_1 NC_012440.1 164287 165162 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 164287..165162 Persephonella marina EX-H1 7675114 YP_002729982.1 CDS atpD_1 NC_012440.1 165187 166620 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 165187..166620 Persephonella marina EX-H1 7674630 YP_002729983.1 CDS PERMA_0186 NC_012440.1 166637 166969 D lipoprotein 166637..166969 Persephonella marina EX-H1 7675819 YP_002729984.1 CDS PERMA_0185 NC_012440.1 166944 167978 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(166944..167978) Persephonella marina EX-H1 7674954 YP_002729985.1 CDS ctpA NC_012440.1 167975 169207 R identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxy- peptidase complement(167975..169207) Persephonella marina EX-H1 7675182 YP_002729986.1 CDS PERMA_0188 NC_012440.1 169263 171314 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator complement(169263..171314) Persephonella marina EX-H1 7675306 YP_002729987.1 CDS PERMA_0189 NC_012440.1 171311 172048 R identified by match to protein family HMM PF00753; beta-lactamase domain protein complement(171311..172048) Persephonella marina EX-H1 7675230 YP_002729988.1 CDS aroC NC_012440.1 172155 173330 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 172155..173330 Persephonella marina EX-H1 7674641 YP_002729989.1 CDS atpB_1 NC_012440.1 173408 174043 D identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131; ATP synthase F0, subunit A 173408..174043 Persephonella marina EX-H1 7675575 YP_002729990.1 CDS PERMA_0192 NC_012440.1 174055 174453 D identified by Glimmer3; hypothetical protein 174055..174453 Persephonella marina EX-H1 7674605 YP_002729991.1 CDS PERMA_0193 NC_012440.1 174477 174833 D identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase subunit C 174477..174833 Persephonella marina EX-H1 7674682 YP_002729992.1 CDS rpmH NC_012440.1 174931 175074 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 174931..175074 Persephonella marina EX-H1 7675016 YP_002729993.1 CDS PERMA_0195 NC_012440.1 175415 175621 D identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 175415..175621 Persephonella marina EX-H1 7675095 YP_002729994.1 CDS PERMA_0196 NC_012440.1 175642 177255 D identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592; match to protein family HMM TIGR03593; inner membrane protein OxaA 175642..177255 Persephonella marina EX-H1 7674298 YP_002729995.1 CDS trmE NC_012440.1 177252 178610 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 177252..178610 Persephonella marina EX-H1 7675738 YP_002729996.1 CDS rho NC_012440.1 178650 179915 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 178650..179915 Persephonella marina EX-H1 7675053 YP_002729997.1 CDS rpmE NC_012440.1 179991 180188 D identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105; ribosomal protein L31 179991..180188 Persephonella marina EX-H1 7676134 YP_002729998.1 CDS prfA NC_012440.1 180188 181273 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 180188..181273 Persephonella marina EX-H1 7675569 YP_002729999.1 CDS PERMA_0202 NC_012440.1 181667 181867 D identified by Glimmer3; hypothetical protein 181667..181867 Persephonella marina EX-H1 7674922 YP_002730000.1 CDS PERMA_0203 NC_012440.1 181860 181973 D identified by Glimmer3; hypothetical protein 181860..181973 Persephonella marina EX-H1 7674626 YP_002730001.1 CDS PERMA_0204 NC_012440.1 182189 182371 R identified by Glimmer3; hypothetical protein complement(182189..182371) Persephonella marina EX-H1 7675591 YP_002730002.1 CDS PERMA_0205 NC_012440.1 182387 182536 R identified by Glimmer3; hypothetical protein complement(182387..182536) Persephonella marina EX-H1 7675094 YP_002730003.1 CDS proS NC_012440.1 182923 184614 D identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF04073; match to protein family HMM TIGR00409; prolyl-tRNA synthetase 182923..184614 Persephonella marina EX-H1 7674926 YP_002730004.1 CDS PERMA_0208 NC_012440.1 184616 185473 D identified by match to protein family HMM PF01590; adenylate/guanylate cyclase 184616..185473 Persephonella marina EX-H1 7675321 YP_002730005.1 CDS PERMA_0209 NC_012440.1 185476 187203 D identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein TapB 185476..187203 Persephonella marina EX-H1 7675558 YP_002730006.1 CDS PERMA_0210 NC_012440.1 187206 188090 R identified by match to protein family HMM PF01555; DNA methylase complement(187206..188090) Persephonella marina EX-H1 7675181 YP_002730007.1 CDS PERMA_0211 NC_012440.1 188083 188742 R identified by Glimmer3; hypothetical protein complement(188083..188742) Persephonella marina EX-H1 7674670 YP_002730008.1 CDS ychF NC_012440.1 188787 189899 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(188787..189899) Persephonella marina EX-H1 7675714 YP_002730009.1 CDS PERMA_0213 NC_012440.1 189963 190232 R identified by Glimmer3; hypothetical protein complement(189963..190232) Persephonella marina EX-H1 7674840 YP_002730010.1 CDS PERMA_0214 NC_012440.1 190431 191618 D identified by match to protein family HMM PF00375; proton/sodium-glutamate symport protein (Glutamate-aspartate carrierprotein) 190431..191618 Persephonella marina EX-H1 7676192 YP_002730011.1 CDS PERMA_0215 NC_012440.1 191619 192527 D identified by match to protein family HMM PF03547; integral membrane protein 191619..192527 Persephonella marina EX-H1 7676171 YP_002730012.1 CDS PERMA_0216 NC_012440.1 192529 192843 D glycoside hydrolase, family 57 192529..192843 Persephonella marina EX-H1 7674216 YP_002730013.1 CDS PERMA_0218 NC_012440.1 192830 193960 D identified by match to protein family HMM PF00266; cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS) 192830..193960 Persephonella marina EX-H1 7675083 YP_002730014.1 CDS PERMA_0217 NC_012440.1 193954 194160 R anti sigma factor FlgM complement(193954..194160) Persephonella marina EX-H1 7675723 YP_002730015.1 CDS PERMA_0220 NC_012440.1 194225 194842 D identified by match to protein family HMM PF00814; peptidase M22 glycoprotease 194225..194842 Persephonella marina EX-H1 7675749 YP_002730016.1 CDS PERMA_0219 NC_012440.1 194828 195796 R identified by match to protein family HMM PF02541; exopolyphosphatase complement(194828..195796) Persephonella marina EX-H1 7674271 YP_002730017.1 CDS PERMA_0221 NC_012440.1 195801 196043 R identified by match to protein family HMM PF09383; ferredoxin complement(195801..196043) Persephonella marina EX-H1 7675715 YP_002730018.1 CDS PERMA_0222 NC_012440.1 196047 196331 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01687; MoaD family protein complement(196047..196331) Persephonella marina EX-H1 7675000 YP_002730019.1 CDS thrC_1 NC_012440.1 196342 197589 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(196342..197589) Persephonella marina EX-H1 7674817 YP_002730020.1 CDS guaB NC_012440.1 197728 199197 D identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 197728..199197 Persephonella marina EX-H1 7675782 YP_002730021.1 CDS PERMA_0225 NC_012440.1 199211 199327 D identified by Glimmer3; hypothetical protein 199211..199327 Persephonella marina EX-H1 7674753 YP_002730022.1 CDS PERMA_0226 NC_012440.1 199350 199715 D hypothetical protein 199350..199715 Persephonella marina EX-H1 7674876 YP_002730023.1 CDS pgk NC_012440.1 199737 200933 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 199737..200933 Persephonella marina EX-H1 7674790 YP_002730024.1 CDS PERMA_0228 NC_012440.1 200946 201725 D identified by match to protein family HMM PF00459; inositol-1-monophosphatase 200946..201725 Persephonella marina EX-H1 7675027 YP_002730025.1 CDS pheA NC_012440.1 201725 202810 D identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase 201725..202810 Persephonella marina EX-H1 7675352 YP_002730026.1 CDS PERMA_0229 NC_012440.1 202797 203867 R identified by match to protein family HMM PF03739; permease, YjgP/YjgQ family complement(202797..203867) Persephonella marina EX-H1 7676120 YP_002730027.1 CDS rpsB NC_012440.1 204016 204918 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 204016..204918 Persephonella marina EX-H1 7675581 YP_002730028.1 CDS tsf NC_012440.1 204918 205511 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 204918..205511 Persephonella marina EX-H1 7675377 YP_002730029.1 CDS pyrH NC_012440.1 205513 206223 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 205513..206223 Persephonella marina EX-H1 7676039 YP_002730030.1 CDS frr NC_012440.1 206320 206874 D identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor 206320..206874 Persephonella marina EX-H1 7674284 YP_002730031.1 CDS PERMA_0235 NC_012440.1 206942 207397 D identified by match to protein family HMM PF02576; similar to protein aq_260; hypothetical protein 206942..207397 Persephonella marina EX-H1 7675199 YP_002730032.1 CDS nusA NC_012440.1 207410 208534 D identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF08529; match to protein family HMM TIGR01953; transcription termination factor NusA 207410..208534 Persephonella marina EX-H1 7676051 YP_002730033.1 CDS PERMA_0237 NC_012440.1 208691 209056 D identified by match to protein family HMM PF01248; ribosomal protein L7Ae/L30e/S12e/Gadd45 208691..209056 Persephonella marina EX-H1 7675153 YP_002730034.1 CDS infB NC_012440.1 209044 211671 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 209044..211671 Persephonella marina EX-H1 7676031 YP_002730035.1 CDS PERMA_0239 NC_012440.1 211673 212308 R identified by match to protein family HMM PF07238; type IV pilus assembly protein PilZ complement(211673..212308) Persephonella marina EX-H1 7674419 YP_002730036.1 CDS PERMA_0241 NC_012440.1 212349 213407 D identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; protein smf (DNA-processing chain A) 212349..213407 Persephonella marina EX-H1 7674616 YP_002730037.1 CDS PERMA_0240 NC_012440.1 213375 214694 R identified by match to protein family HMM PF00324; match to protein family HMM PF03845; amino acid transporter complement(213375..214694) Persephonella marina EX-H1 7674285 YP_002730038.1 CDS pnp NC_012440.1 214695 216824 R identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR03591; polynucleotide phosphorylase/polyadenylase complement(214695..216824) Persephonella marina EX-H1 7675445 YP_002730039.1 CDS rpsO NC_012440.1 216824 217108 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(216824..217108) Persephonella marina EX-H1 7675818 YP_002730040.1 CDS PERMA_0244 NC_012440.1 217272 217790 D identified by Glimmer3; hypothetical protein 217272..217790 Persephonella marina EX-H1 7675505 YP_002730041.1 CDS PERMA_0245 NC_012440.1 217815 217973 R hypothetical protein complement(217815..217973) Persephonella marina EX-H1 7674524 YP_002730042.1 CDS PERMA_0246 NC_012440.1 218233 218496 R identified by match to protein family HMM PF01402; ribbon-helix-helix protein, CopG family complement(218233..218496) Persephonella marina EX-H1 7676177 YP_002730043.1 CDS PERMA_0247 NC_012440.1 218871 219371 R endonuclease complement(218871..219371) Persephonella marina EX-H1 7675587 YP_002730044.1 CDS PERMA_0248 NC_012440.1 219377 221233 R identified by match to protein family HMM PF09369; hypothetical protein complement(219377..221233) Persephonella marina EX-H1 7675528 YP_002730045.1 CDS PERMA_0249 NC_012440.1 221251 225210 R identified by match to protein family HMM PF00271; superfamily II DNA and RNA helicase complement(221251..225210) Persephonella marina EX-H1 7674540 YP_002730046.1 CDS PERMA_0250 NC_012440.1 225213 225899 R identified by match to protein family HMM PF00633; T/G-specific DNA glycosylase complement(225213..225899) Persephonella marina EX-H1 7674390 YP_002730047.1 CDS PERMA_0251 NC_012440.1 225896 226819 R identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; modification methylase FnuDI complement(225896..226819) Persephonella marina EX-H1 7675690 YP_002730048.1 CDS PERMA_0252 NC_012440.1 226974 227261 R identified by Glimmer3; hypothetical protein complement(226974..227261) Persephonella marina EX-H1 7674181 YP_002730049.1 CDS PERMA_0254 NC_012440.1 227980 229119 D identified by match to protein family HMM PF08495; hypothetical protein 227980..229119 Persephonella marina EX-H1 7674929 YP_002730050.1 CDS PERMA_0255 NC_012440.1 229116 230498 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase 229116..230498 Persephonella marina EX-H1 7674409 YP_002730051.1 CDS PERMA_0256 NC_012440.1 230510 231295 D identified by match to protein family HMM PF00005; ABC transporter 230510..231295 Persephonella marina EX-H1 7674243 YP_002730052.1 CDS thrC_2 NC_012440.1 231364 232434 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 231364..232434 Persephonella marina EX-H1 7675907 YP_002730053.1 CDS panE NC_012440.1 232431 233375 D identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 232431..233375 Persephonella marina EX-H1 7674182 YP_002730054.1 CDS rph NC_012440.1 233434 234219 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 233434..234219 Persephonella marina EX-H1 7675538 YP_002730055.1 CDS purA NC_012440.1 234219 235517 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 234219..235517 Persephonella marina EX-H1 7674958 YP_002730056.1 CDS PERMA_0261 NC_012440.1 235520 235783 D identified by Glimmer3; hypothetical protein 235520..235783 Persephonella marina EX-H1 7675847 YP_002730057.1 CDS PERMA_0262 NC_012440.1 235783 237363 D identified by Glimmer3; hypothetical protein 235783..237363 Persephonella marina EX-H1 7676197 YP_002730058.1 CDS PERMA_0263 NC_012440.1 237360 237737 D identified by Glimmer3; hypothetical protein 237360..237737 Persephonella marina EX-H1 7675119 YP_002730059.1 CDS PERMA_0264 NC_012440.1 237734 239320 D identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; yjef family protein 237734..239320 Persephonella marina EX-H1 7674485 YP_002730060.1 CDS PERMA_0265 NC_012440.1 239358 240734 D aldolase 239358..240734 Persephonella marina EX-H1 7675796 YP_002730061.1 CDS PERMA_0266 NC_012440.1 240740 241249 D hypothetical protein 240740..241249 Persephonella marina EX-H1 7675151 YP_002730062.1 CDS fbp NC_012440.1 241261 242226 D identified by match to protein family HMM PF00316; fructose-1,6-bisphosphatase 241261..242226 Persephonella marina EX-H1 7675703 YP_002730063.1 CDS PERMA_0267 NC_012440.1 242216 244015 R identified by match to protein family HMM PF00563; diguanylate cyclase/phosphodiesterase complement(242216..244015) Persephonella marina EX-H1 7675462 YP_002730064.1 CDS PERMA_0269 NC_012440.1 244009 245052 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; 2,3-butanediol dehydrogenase complement(244009..245052) Persephonella marina EX-H1 7675544 YP_002730065.1 CDS crcB NC_012440.1 245154 245528 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 245154..245528 Persephonella marina EX-H1 7674654 YP_002730066.1 CDS PERMA_0271 NC_012440.1 245538 245864 D identified by match to protein family HMM PF02641; hypothetical protein 245538..245864 Persephonella marina EX-H1 7675624 YP_002730067.1 CDS PERMA_0272 NC_012440.1 245934 246512 D identified by Glimmer3; hypothetical protein 245934..246512 Persephonella marina EX-H1 7675349 YP_002730068.1 CDS PERMA_0273 NC_012440.1 246992 247450 D identified by match to protein family HMM PF00011; match to protein family HMM PF04969; small heat shock protein 246992..247450 Persephonella marina EX-H1 7675026 YP_002730069.1 CDS PERMA_0274 NC_012440.1 247499 247774 D identified by Glimmer3; hypothetical protein 247499..247774 Persephonella marina EX-H1 7674329 YP_002730070.1 CDS trpE NC_012440.1 247812 249302 D identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564; anthranilate synthase component I 247812..249302 Persephonella marina EX-H1 7675034 YP_002730071.1 CDS dapE NC_012440.1 249299 250360 R catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate; succinyl-diaminopimelate desuccinylase complement(249299..250360) Persephonella marina EX-H1 7674688 YP_002730072.1 CDS PERMA_0277 NC_012440.1 250357 251142 R identified by match to protein family HMM PF01614; transcriptional regulator complement(250357..251142) Persephonella marina EX-H1 7675421 YP_002730073.1 CDS PERMA_0280 NC_012440.1 251356 252171 R identified by match to protein family HMM PF04055; radical SAM enzyme, Cfr family complement(251356..252171) Persephonella marina EX-H1 7674938 YP_002730074.1 CDS alaS NC_012440.1 252260 254896 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 252260..254896 Persephonella marina EX-H1 7675255 YP_002730075.1 CDS PERMA_0282 NC_012440.1 254935 255363 D identified by match to protein family HMM PF03479; hypothetical protein 254935..255363 Persephonella marina EX-H1 7674260 YP_002730076.1 CDS PERMA_0283 NC_012440.1 255367 255888 R identified by match to protein family HMM PF03350; hypothetical protein complement(255367..255888) Persephonella marina EX-H1 7674634 YP_002730077.1 CDS PERMA_0285 NC_012440.1 255989 256789 D identified by match to protein family HMM PF01578; cytochrome c biogenesis protein 255989..256789 Persephonella marina EX-H1 7674431 YP_002730078.1 CDS pyrE NC_012440.1 256779 257330 R identified by match to protein family HMM PF00156; match to protein family HMM TIGR00336; orotate phosphoribosyltransferase complement(256779..257330) Persephonella marina EX-H1 7674582 YP_002730079.1 CDS PERMA_0286 NC_012440.1 257341 258081 R identified by match to protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(257341..258081) Persephonella marina EX-H1 7674369 YP_002730080.1 CDS purL NC_012440.1 258211 260466 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 258211..260466 Persephonella marina EX-H1 7674307 YP_002730081.1 CDS PERMA_0288 NC_012440.1 260634 261224 D identified by match to protein family HMM PF00116; cytochrome c oxidase, subunit II 260634..261224 Persephonella marina EX-H1 7675120 YP_002730082.1 CDS PERMA_0289 NC_012440.1 261221 262882 D identified by match to protein family HMM PF00115; cytochrome c oxidase, subunit I 261221..262882 Persephonella marina EX-H1 7675826 YP_002730083.1 CDS PERMA_0290 NC_012440.1 262885 263475 D hypothetical protein 262885..263475 Persephonella marina EX-H1 7674627 YP_002730084.1 CDS PERMA_0291 NC_012440.1 263536 264084 D hypothetical protein 263536..264084 Persephonella marina EX-H1 7675215 YP_002730085.1 CDS PERMA_0293 NC_012440.1 264072 267137 D identified by match to protein family HMM PF00580; UvrD/REP helicase 264072..267137 Persephonella marina EX-H1 7674273 YP_002730086.1 CDS PERMA_0292 NC_012440.1 267125 268267 R hypothetical protein complement(267125..268267) Persephonella marina EX-H1 7675308 YP_002730087.1 CDS PERMA_0295 NC_012440.1 268381 269739 D cytochrome c biogenesis protein, CcmF/CycK/CcsA family 268381..269739 Persephonella marina EX-H1 7675156 YP_002730088.1 CDS PERMA_0294 NC_012440.1 269736 270365 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcriptional regulator, Crp/Fnr family complement(269736..270365) Persephonella marina EX-H1 7674299 YP_002730089.1 CDS PERMA_0296 NC_012440.1 270398 271093 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495; anaerobic ribonucleoside-triphosphate reductase activating protein complement(270398..271093) Persephonella marina EX-H1 7675938 YP_002730090.1 CDS nrdD NC_012440.1 271175 272980 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(271175..272980) Persephonella marina EX-H1 7674880 YP_002730091.1 CDS napA NC_012440.1 273268 276108 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 273268..276108 Persephonella marina EX-H1 7675874 YP_002730092.1 CDS napG NC_012440.1 276121 276981 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 276121..276981 Persephonella marina EX-H1 7674914 YP_002730093.1 CDS napH NC_012440.1 276971 277831 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 276971..277831 Persephonella marina EX-H1 7674520 YP_002730094.1 CDS napB NC_012440.1 277824 278366 D identified by match to protein family HMM PF03892; periplasmic nitrate reductase, diheme cytochrome c subunit 277824..278366 Persephonella marina EX-H1 7675514 YP_002730095.1 CDS PERMA_0302 NC_012440.1 278373 278927 D identified by match to protein family HMM PF00037; periplasmic nitrate reductase maturation protein NapF 278373..278927 Persephonella marina EX-H1 7675105 YP_002730096.1 CDS PERMA_0303 NC_012440.1 278920 279876 D periplasmic protein 278920..279876 Persephonella marina EX-H1 7675821 YP_002730097.1 CDS PERMA_0304 NC_012440.1 279879 280238 D identified by match to protein family HMM PF03927; periplasmic nitrate reductase component NapD 279879..280238 Persephonella marina EX-H1 7674774 YP_002730098.1 CDS PERMA_0305 NC_012440.1 280443 281711 D hypothetical protein 280443..281711 Persephonella marina EX-H1 7674845 YP_002730099.1 CDS PERMA_0306 NC_012440.1 281816 283459 D identified by match to protein family HMM PF02239; nitrite reductase (cytochrome cd1) (cytochromeoxidase) (Hydroxylamine reductase) 281816..283459 Persephonella marina EX-H1 7675169 YP_002730100.1 CDS PERMA_0307 NC_012440.1 283462 285132 D identified by match to protein family HMM PF00034; match to protein family HMM PF02239; cytochrome c, class I 283462..285132 Persephonella marina EX-H1 7675487 YP_002730101.1 CDS PERMA_0308 NC_012440.1 285116 286204 D identified by match to protein family HMM PF04055; heme d1 biosynthesis protein NirJ 285116..286204 Persephonella marina EX-H1 7675748 YP_002730102.1 CDS PERMA_0309 NC_012440.1 286192 287250 D identified by match to protein family HMM PF02239; heme d1 biosynthesis protein NirF 286192..287250 Persephonella marina EX-H1 7675106 YP_002730103.1 CDS cobA NC_012440.1 287264 288019 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrinogen-III C-methyltransferase 287264..288019 Persephonella marina EX-H1 7675767 YP_002730104.1 CDS PERMA_0311 NC_012440.1 288016 289050 D transcriptional regulator, AsnC/Lrp family 288016..289050 Persephonella marina EX-H1 7675649 YP_002730105.1 CDS PERMA_0312 NC_012440.1 289016 289498 D identified by match to protein family HMM PF02830; V4R domain protein 289016..289498 Persephonella marina EX-H1 7675855 YP_002730106.1 CDS PERMA_0313 NC_012440.1 289599 289892 D hypothetical protein 289599..289892 Persephonella marina EX-H1 7675011 YP_002730107.1 CDS PERMA_0314 NC_012440.1 289923 292145 R nitric oxide reductase, cytochrome B subunit complement(289923..292145) Persephonella marina EX-H1 7674499 YP_002730108.1 CDS PERMA_0315 NC_012440.1 292159 292566 R identified by Glimmer3; hypothetical protein complement(292159..292566) Persephonella marina EX-H1 7674486 YP_002730109.1 CDS PERMA_0316 NC_012440.1 292808 293137 R identified by match to protein family HMM PF07883; cupin domain protein complement(292808..293137) Persephonella marina EX-H1 7674721 YP_002730110.1 CDS PERMA_0317 NC_012440.1 293176 293604 R hypothetical protein complement(293176..293604) Persephonella marina EX-H1 7674221 YP_002730111.1 CDS PERMA_0318 NC_012440.1 293607 294035 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein complement(293607..294035) Persephonella marina EX-H1 7674762 YP_002730112.1 CDS PERMA_0319 NC_012440.1 294035 294463 R identified by match to protein family HMM PF01814; hemerythrin HHE cation binding domain subfamily complement(294035..294463) Persephonella marina EX-H1 7674855 YP_002730113.1 CDS PERMA_0320 NC_012440.1 294538 294996 R hypothetical protein complement(294538..294996) Persephonella marina EX-H1 7674804 YP_002730114.1 CDS aroD NC_012440.1 295126 295815 D identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093; 3-dehydroquinate dehydratase, type I 295126..295815 Persephonella marina EX-H1 7675949 YP_002730115.1 CDS PERMA_0322 NC_012440.1 295819 296169 D identified by match to protein family HMM PF01258; DnaK suppressor protein 295819..296169 Persephonella marina EX-H1 7675334 YP_002730116.1 CDS PERMA_0323 NC_012440.1 296184 296768 D identified by match to protein family HMM PF00857; pyrazinamidase/nicotinamidase 296184..296768 Persephonella marina EX-H1 7675839 YP_002730117.1 CDS PERMA_0324 NC_012440.1 296765 297076 D protein 1243; identified by match to protein family HMM PF01906; hypothetical protein 296765..297076 Persephonella marina EX-H1 7675617 YP_002730118.1 CDS PERMA_0325 NC_012440.1 297078 298832 D identified by match to protein family HMM PF00476; match to protein family HMM PF01612; DNA polymerase I 297078..298832 Persephonella marina EX-H1 7674399 YP_002730119.1 CDS PERMA_0326 NC_012440.1 298835 299203 R identified by match to protein family HMM PF00023; 2-5A-dependent ribonuclease (2-5A-dependent RNase)(Ribonuclease L) (RNase L) (Ribonuclease 4) complement(298835..299203) Persephonella marina EX-H1 7674622 YP_002730120.1 CDS recO NC_012440.1 299279 299974 D identified by match to protein family HMM TIGR00613; DNA repair protein RecO 299279..299974 Persephonella marina EX-H1 7675721 YP_002730121.1 CDS PERMA_0328 NC_012440.1 299993 300646 R hypothetical protein complement(299993..300646) Persephonella marina EX-H1 7674808 YP_002730122.1 CDS PERMA_0329 NC_012440.1 300664 301563 R identified by match to protein family HMM PF06745; ATPase, RecA-superfamily complement(300664..301563) Persephonella marina EX-H1 7674412 YP_002730123.1 CDS PERMA_0330 NC_012440.1 301631 301975 R identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase complement(301631..301975) Persephonella marina EX-H1 7674442 YP_002730124.1 CDS PERMA_0331 NC_012440.1 301983 302474 R identified by Glimmer3; hypothetical protein complement(301983..302474) Persephonella marina EX-H1 7676124 YP_002730125.1 CDS PERMA_0332 NC_012440.1 302474 302611 R identified by Glimmer3; hypothetical protein complement(302474..302611) Persephonella marina EX-H1 7674436 YP_002730126.1 CDS serA NC_012440.1 302923 304512 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 302923..304512 Persephonella marina EX-H1 7675741 YP_002730127.1 CDS PERMA_0334 NC_012440.1 304527 305636 D identified by match to protein family HMM PF01658; match to protein family HMM PF07994; Myo-inositol-1-phosphate synthase 304527..305636 Persephonella marina EX-H1 7675662 YP_002730128.1 CDS PERMA_0335 NC_012440.1 305657 306427 D hypothetical protein 305657..306427 Persephonella marina EX-H1 7674380 YP_002730129.1 CDS PERMA_0336 NC_012440.1 306450 306635 R identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013; hypothetical protein complement(306450..306635) Persephonella marina EX-H1 7675656 YP_002730130.1 CDS PERMA_0337 NC_012440.1 306637 307992 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; nitrogen assimilation regulatory protein NtrX complement(306637..307992) Persephonella marina EX-H1 7676112 YP_002730131.1 CDS alr NC_012440.1 308018 309097 R identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase complement(308018..309097) Persephonella marina EX-H1 7674884 YP_002730132.1 CDS PERMA_0339 NC_012440.1 309228 309584 D identified by match to protein family HMM PF00403; copper-transporting atpase Ran1 (protein responsive toantagonist 1) 309228..309584 Persephonella marina EX-H1 7675760 YP_002730133.1 CDS PERMA_0340 NC_012440.1 309692 311515 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 309692..311515 Persephonella marina EX-H1 7675565 YP_002730134.1 CDS PERMA_0341 NC_012440.1 311517 312230 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 311517..312230 Persephonella marina EX-H1 7674532 YP_002730135.1 CDS PERMA_0342 NC_012440.1 312273 313418 D identified by match to protein family HMM PF00266; soluble hydrogenase 42 kDsubunit A (Tritium exchangesubunit) 312273..313418 Persephonella marina EX-H1 7675375 YP_002730136.1 CDS PERMA_0343 NC_012440.1 313436 314074 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 313436..314074 Persephonella marina EX-H1 7675829 YP_002730137.1 CDS PERMA_0344 NC_012440.1 314085 315344 D identified by match to protein family HMM PF00587; histidyl-tRNA synthetase 314085..315344 Persephonella marina EX-H1 7674824 YP_002730138.1 CDS PERMA_0345 NC_012440.1 315384 315872 D identified by match to protein family HMM PF00254; peptidyl-prolyl cis-trans isomerase, fkbp-type 315384..315872 Persephonella marina EX-H1 7675470 YP_002730139.1 CDS PERMA_0346 NC_012440.1 315888 317024 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; L-lysine 2,3-aminomutase (KAM) (LAM) complement(315888..317024) Persephonella marina EX-H1 7675322 YP_002730140.1 CDS PERMA_0347 NC_012440.1 317025 317435 R identified by Glimmer3; hypothetical protein complement(317025..317435) Persephonella marina EX-H1 7674995 YP_002730141.1 CDS PERMA_0349 NC_012440.1 317513 317953 D identified by match to protein family HMM TIGR00725; hypothetical protein 317513..317953 Persephonella marina EX-H1 7676005 YP_002730142.1 CDS hypA NC_012440.1 318208 318552 D identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel insertion protein HypA 318208..318552 Persephonella marina EX-H1 7675998 YP_002730143.1 CDS PERMA_0351 NC_012440.1 318553 319968 R hypothetical protein complement(318553..319968) Persephonella marina EX-H1 7675046 YP_002730144.1 CDS PERMA_0352 NC_012440.1 319985 322117 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor complement(319985..322117) Persephonella marina EX-H1 7675726 YP_002730145.1 CDS PERMA_0353 NC_012440.1 322303 322854 R hypothetical protein complement(322303..322854) Persephonella marina EX-H1 7674555 YP_002730146.1 CDS PERMA_0354 NC_012440.1 322864 323670 R identified by match to protein family HMM PF06230; hypothetical protein complement(322864..323670) Persephonella marina EX-H1 7675435 YP_002730147.1 CDS lpxA NC_012440.1 323667 324464 R identified by match to protein family HMM PF00132; match to protein family HMM TIGR01852; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase complement(323667..324464) Persephonella marina EX-H1 7675657 YP_002730148.1 CDS trxA NC_012440.1 324474 324791 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(324474..324791) Persephonella marina EX-H1 7674861 YP_002730149.1 CDS PERMA_0357 NC_012440.1 324795 325106 R identified by match to protein family HMM PF01022; transcriptional regulator, ArsR family complement(324795..325106) Persephonella marina EX-H1 7674414 YP_002730150.1 CDS PERMA_0358 NC_012440.1 325242 326126 R identified by match to protein family HMM PF02754; succinate dehydrogenase, subunit C complement(325242..326126) Persephonella marina EX-H1 7675547 YP_002730151.1 CDS PERMA_0359 NC_012440.1 326126 327190 R identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384; fumarate reductase, iron-sulfur subunit complement(326126..327190) Persephonella marina EX-H1 7675701 YP_002730152.1 CDS queF NC_012440.1 327330 327716 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(327330..327716) Persephonella marina EX-H1 7675737 YP_002730153.1 CDS PERMA_0361 NC_012440.1 327718 328590 R identified by match to protein family HMM PF00348; geranyltranstransferase (Farnesyl-diphosphate synthase) complement(327718..328590) Persephonella marina EX-H1 7675700 YP_002730154.1 CDS PERMA_0362 NC_012440.1 328591 328941 R identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein complement(328591..328941) Persephonella marina EX-H1 7675646 YP_002730155.1 CDS rnhB NC_012440.1 328950 329546 R identified by match to protein family HMM PF01351; ribonuclease HII complement(328950..329546) Persephonella marina EX-H1 7674994 YP_002730156.1 CDS rplS NC_012440.1 329551 329949 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(329551..329949) Persephonella marina EX-H1 7675908 YP_002730157.1 CDS PERMA_0365 NC_012440.1 330015 330497 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; bacterioferritin comigratory protein BCP complement(330015..330497) Persephonella marina EX-H1 7674241 YP_002730158.1 CDS PERMA_0366 NC_012440.1 330509 331138 R identified by match to protein family HMM PF01502; match to protein family HMM PF01503; match to protein family HMM TIGR03188; histidine biosynthesis bifunctional protein hisIE complement(330509..331138) Persephonella marina EX-H1 7675621 YP_002730159.1 CDS dxs NC_012440.1 331225 333120 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 331225..333120 Persephonella marina EX-H1 7674537 YP_002730160.1 CDS PERMA_0367 NC_012440.1 333117 333539 R hypothetical protein complement(333117..333539) Persephonella marina EX-H1 7674693 YP_002730161.1 CDS PERMA_0369 NC_012440.1 333688 334275 D identified by match to protein family HMM PF02577; hypothetical protein 333688..334275 Persephonella marina EX-H1 7674893 YP_002730162.1 CDS PERMA_0370 NC_012440.1 334287 335708 R identified by match to protein family HMM PF00023; pfs, nacht and ankyrin domain protein complement(334287..335708) Persephonella marina EX-H1 7676111 YP_002730163.1 CDS PERMA_0371 NC_012440.1 335680 336486 R identified by match to protein family HMM PF00023; MHC_I C-terminus family protein complement(335680..336486) Persephonella marina EX-H1 7674879 YP_002730164.1 CDS PERMA_0372 NC_012440.1 336488 337204 R identified by match to protein family HMM PF00023; ankyrin domain protein complement(336488..337204) Persephonella marina EX-H1 7675398 YP_002730165.1 CDS asd NC_012440.1 337275 338288 R identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase complement(337275..338288) Persephonella marina EX-H1 7674591 YP_002730166.1 CDS PERMA_0374 NC_012440.1 338349 338537 D identified by Glimmer3; hypothetical protein 338349..338537 Persephonella marina EX-H1 7676073 YP_002730167.1 CDS PERMA_0375 NC_012440.1 338547 339233 D identified by match to protein family HMM PF07719; match to protein family HMM PF07720; hypothetical protein 338547..339233 Persephonella marina EX-H1 7675629 YP_002730168.1 CDS uppS NC_012440.1 339230 339931 D identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; di-trans, poly-cis-decaprenylcistransferase 339230..339931 Persephonella marina EX-H1 7674319 YP_002730169.1 CDS cdsA_1 NC_012440.1 339928 340701 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 339928..340701 Persephonella marina EX-H1 7675108 YP_002730170.1 CDS PERMA_0377 NC_012440.1 340698 341810 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; match to protein family HMM TIGR03699; menaquinone biosynthesis protein, family complement(340698..341810) Persephonella marina EX-H1 7674245 YP_002730171.1 CDS PERMA_0379 NC_012440.1 341877 342725 R lipoprotein complement(341877..342725) Persephonella marina EX-H1 7675486 YP_002730172.1 CDS PERMA_0380 NC_012440.1 342821 344341 D identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase family protein 342821..344341 Persephonella marina EX-H1 7675237 YP_002730173.1 CDS uppP NC_012440.1 344365 345129 D identified by match to protein family HMM PF02673; match to protein family HMM TIGR00753; UDP-diphosphatase 344365..345129 Persephonella marina EX-H1 7674625 YP_002730174.1 CDS PERMA_0382 NC_012440.1 345267 345467 R identified by Glimmer3; hypothetical protein complement(345267..345467) Persephonella marina EX-H1 7674502 YP_002730175.1 CDS PERMA_0384 NC_012440.1 345522 346445 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM protein, family complement(345522..346445) Persephonella marina EX-H1 7674261 YP_002730176.1 CDS PERMA_0385 NC_012440.1 346498 348564 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase complement(346498..348564) Persephonella marina EX-H1 7674427 YP_002730177.1 CDS PERMA_0386 NC_012440.1 348561 349481 R identified by match to protein family HMM PF03150; cytochrome c551 peroxidase (cytochrome cperoxidase) complement(348561..349481) Persephonella marina EX-H1 7675913 YP_002730178.1 CDS leuB NC_012440.1 349587 350660 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(349587..350660) Persephonella marina EX-H1 7675424 YP_002730179.1 CDS nadC NC_012440.1 350684 351511 R identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide diphosphorylase (carboxylating) complement(350684..351511) Persephonella marina EX-H1 7674754 YP_002730180.1 CDS PERMA_0389 NC_012440.1 351521 351949 R identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701; hypothetical protein complement(351521..351949) Persephonella marina EX-H1 7674346 YP_002730181.1 CDS PERMA_0390 NC_012440.1 352064 352210 D hypothetical protein 352064..352210 Persephonella marina EX-H1 7675692 YP_002730182.1 CDS PERMA_0391 NC_012440.1 352235 352576 R identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein complement(352235..352576) Persephonella marina EX-H1 7674263 YP_002730183.1 CDS sppA NC_012440.1 352644 353471 R identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type complement(352644..353471) Persephonella marina EX-H1 7675069 YP_002730184.1 CDS rbfA NC_012440.1 353486 353788 R identified by match to protein family HMM PF02033; match to protein family HMM TIGR00082; ribosome-binding factor A complement(353486..353788) Persephonella marina EX-H1 7674612 YP_002730185.1 CDS PERMA_0394 NC_012440.1 353785 354066 R identified by match to protein family HMM PF04456; YlxP complement(353785..354066) Persephonella marina EX-H1 7674447 YP_002730186.1 CDS PERMA_0395 NC_012440.1 354102 354899 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; hydrolase, TatD family complement(354102..354899) Persephonella marina EX-H1 7676070 YP_002730187.1 CDS PERMA_0396 NC_012440.1 354892 356775 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protease FtsH complement(354892..356775) Persephonella marina EX-H1 7674205 YP_002730188.1 CDS PERMA_0397 NC_012440.1 356776 358134 R identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM PF09179; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthase complement(356776..358134) Persephonella marina EX-H1 7675952 YP_002730189.1 CDS rpsT NC_012440.1 358255 358533 R identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029; ribosomal protein S20 complement(358255..358533) Persephonella marina EX-H1 7674927 YP_002730190.1 CDS PERMA_0400 NC_012440.1 358697 359899 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; S-adenosylmethionine synthetase 358697..359899 Persephonella marina EX-H1 7674803 YP_002730191.1 CDS PERMA_0401 NC_012440.1 360007 362001 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08376; methyl-accepting chemotaxis protein 360007..362001 Persephonella marina EX-H1 7675924 YP_002730192.1 CDS rgy NC_012440.1 362002 365496 R catalyzes the magnesium and ATP-dependent positive supercoiling of DNA; contains helicase and topoisomerase domains; reverse gyrase complement(362002..365496) Persephonella marina EX-H1 7674179 YP_002730193.1 CDS PERMA_0403 NC_012440.1 365570 366574 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein complement(365570..366574) Persephonella marina EX-H1 7676062 YP_002730194.1 CDS PERMA_0404 NC_012440.1 366631 367740 D identified by match to protein family HMM PF00534; glucosyl transferase I 366631..367740 Persephonella marina EX-H1 7674873 YP_002730195.1 CDS PERMA_0405 NC_012440.1 367783 368745 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDsubunit As and two PyrK subunits; dihydroorotate dehydrogenase 1B 367783..368745 Persephonella marina EX-H1 7675959 YP_002730196.1 CDS PERMA_0406 NC_012440.1 368746 370731 D identified by match to protein family HMM PF01432; oligopeptidase A 368746..370731 Persephonella marina EX-H1 7675860 YP_002730197.1 CDS PERMA_0407 NC_012440.1 370732 371058 D identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase 370732..371058 Persephonella marina EX-H1 7674343 YP_002730198.1 CDS PERMA_0408 NC_012440.1 371116 372288 D identified by match to protein family HMM PF00016; ribulose bisphosphate carboxylase (RuBisCO) 371116..372288 Persephonella marina EX-H1 7675806 YP_002730199.1 CDS PERMA_0409 NC_012440.1 372285 372935 D identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01489; 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase (HK-MTPenyl-1-P phosphatase) 372285..372935 Persephonella marina EX-H1 7676059 YP_002730200.1 CDS PERMA_0410 NC_012440.1 373086 373847 D identified by match to protein family HMM PF00034; cytochrome c, class I 373086..373847 Persephonella marina EX-H1 7674311 YP_002730201.1 CDS PERMA_0411 NC_012440.1 373863 375254 D identified by match to protein family HMM PF00115; cytochrome c oxidase, subunit I 373863..375254 Persephonella marina EX-H1 7676163 YP_002730202.1 CDS PERMA_0412 NC_012440.1 375269 376000 D identified by match to protein family HMM PF02433; cytochrome c oxidase, Cbb3-type, subunit II 375269..376000 Persephonella marina EX-H1 7675712 YP_002730203.1 CDS PERMA_0413 NC_012440.1 376057 376353 D identified by Glimmer3; hypothetical protein 376057..376353 Persephonella marina EX-H1 7674827 YP_002730204.1 CDS PERMA_0414 NC_012440.1 376353 376577 D cytochrome c 376353..376577 Persephonella marina EX-H1 7675936 YP_002730205.1 CDS PERMA_0416 NC_012440.1 376782 377456 D identified by match to protein family HMM PF01694; rhomboid family protein 376782..377456 Persephonella marina EX-H1 7675410 YP_002730206.1 CDS PERMA_0415 NC_012440.1 377438 378298 R identified by match to protein family HMM PF00041; fibronectin type III domain protein complement(377438..378298) Persephonella marina EX-H1 7674240 YP_002730207.1 CDS kdsA NC_012440.1 378324 379112 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(378324..379112) Persephonella marina EX-H1 7674512 YP_002730208.1 CDS PERMA_0418 NC_012440.1 379215 379658 D protein-glutamate O-methyltransferase 379215..379658 Persephonella marina EX-H1 7675838 YP_002730209.1 CDS PERMA_0419 NC_012440.1 379752 380354 D identified by match to protein family HMM PF02630; electron transport protein SCO1/SenC 379752..380354 Persephonella marina EX-H1 7676105 YP_002730210.1 CDS PERMA_0420 NC_012440.1 380380 380844 D identified by match to protein family HMM PF01618; biopolymer transport protein ExbB 380380..380844 Persephonella marina EX-H1 7675102 YP_002730211.1 CDS PERMA_0421 NC_012440.1 380844 381248 D identified by match to protein family HMM PF02472; biopolymer transport protein ExbD 380844..381248 Persephonella marina EX-H1 7675725 YP_002730212.1 CDS PERMA_0422 NC_012440.1 381250 382128 D identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB family C- domain protein 381250..382128 Persephonella marina EX-H1 7675247 YP_002730213.1 CDS rnhA NC_012440.1 382130 382567 D identified by match to protein family HMM PF00075; ribonuclease HI 382130..382567 Persephonella marina EX-H1 7674646 YP_002730214.1 CDS radA NC_012440.1 382573 383916 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 382573..383916 Persephonella marina EX-H1 7675968 YP_002730215.1 CDS PERMA_0425 NC_012440.1 383921 384571 D identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase family 4 protein 383921..384571 Persephonella marina EX-H1 7674333 YP_002730216.1 CDS pyrF NC_012440.1 384653 385345 D identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 384653..385345 Persephonella marina EX-H1 7676144 YP_002730217.1 CDS rpoN NC_012440.1 385339 386643 D identified by match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395; RNA polymerase sigma-54 factor 385339..386643 Persephonella marina EX-H1 7675568 YP_002730218.1 CDS PERMA_0428 NC_012440.1 386640 387206 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; sigma 54 modulation protein 386640..387206 Persephonella marina EX-H1 7674640 YP_002730219.1 CDS rplM NC_012440.1 387281 387733 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 387281..387733 Persephonella marina EX-H1 7676079 YP_002730220.1 CDS rpsI NC_012440.1 387751 388179 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 387751..388179 Persephonella marina EX-H1 7675167 YP_002730221.1 CDS argC NC_012440.1 388276 389292 D identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01850; N-acetyl-gamma-glutamyl-phosphate reductase 388276..389292 Persephonella marina EX-H1 7675279 YP_002730222.1 CDS rfaE_1 NC_012440.1 389289 390242 D identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198; bifunctional protein RfaE, domain I 389289..390242 Persephonella marina EX-H1 7675224 YP_002730223.1 CDS purS NC_012440.1 390279 390521 D identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, PurS protein 390279..390521 Persephonella marina EX-H1 7674317 YP_002730224.1 CDS purQ NC_012440.1 390532 391218 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 390532..391218 Persephonella marina EX-H1 7676033 YP_002730225.1 CDS PERMA_0434 NC_012440.1 391199 391663 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thiol-disulfide oxidoreductase ResA complement(391199..391663) Persephonella marina EX-H1 7676158 YP_002730226.1 CDS PERMA_0437 NC_012440.1 391720 392751 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 391720..392751 Persephonella marina EX-H1 7674664 YP_002730227.1 CDS PERMA_0436 NC_012440.1 392748 393230 R hypothetical protein complement(392748..393230) Persephonella marina EX-H1 7674738 YP_002730228.1 CDS PERMA_0438 NC_012440.1 393227 395710 R identified by match to protein family HMM PF00577; match to protein family HMM PF05036; P pilus assembly, fimbrial Usher protein complement(393227..395710) Persephonella marina EX-H1 7675442 YP_002730229.1 CDS PERMA_0439 NC_012440.1 395761 395883 R identified by Glimmer3; hypothetical protein complement(395761..395883) Persephonella marina EX-H1 7675596 YP_002730230.1 CDS PERMA_0440 NC_012440.1 395894 396709 R identified by Glimmer3; hypothetical protein complement(395894..396709) Persephonella marina EX-H1 7676183 YP_002730231.1 CDS PERMA_0441 NC_012440.1 396703 397167 R identified by Glimmer3; hypothetical protein complement(396703..397167) Persephonella marina EX-H1 7674970 YP_002730232.1 CDS PERMA_0442 NC_012440.1 397227 397688 R identified by match to protein family HMM PF05229; VCBS protein complement(397227..397688) Persephonella marina EX-H1 7674734 YP_002730233.1 CDS PERMA_0443 NC_012440.1 397816 398100 R transposase complement(397816..398100) Persephonella marina EX-H1 7674844 YP_002730234.1 CDS hemC NC_012440.1 398301 399227 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 398301..399227 Persephonella marina EX-H1 7675709 YP_002730235.1 CDS PERMA_0445 NC_012440.1 399234 400607 D identified by match to protein family HMM PF02366; hypothetical protein 399234..400607 Persephonella marina EX-H1 7675542 YP_002730236.1 CDS PERMA_0446 NC_012440.1 400604 402319 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter 400604..402319 Persephonella marina EX-H1 7675539 YP_002730237.1 CDS PERMA_0447 NC_012440.1 402352 403434 D hypothetical protein 402352..403434 Persephonella marina EX-H1 7675497 YP_002730238.1 CDS PERMA_0449 NC_012440.1 403427 403972 D identified by match to protein family HMM PF01569; PAP2 superfamily protein 403427..403972 Persephonella marina EX-H1 7674781 YP_002730239.1 CDS pdxJ NC_012440.1 403947 404687 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(403947..404687) Persephonella marina EX-H1 7676037 YP_002730240.1 CDS PERMA_0450 NC_012440.1 404774 405958 D identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 404774..405958 Persephonella marina EX-H1 7675195 YP_002730241.1 CDS PERMA_0451 NC_012440.1 405958 406725 D identified by match to protein family HMM PF03309; match to protein family HMM TIGR00671; type III pantothenate kinase (Pantothenic acid kinase)(PanK-III) 405958..406725 Persephonella marina EX-H1 7674573 YP_002730242.1 CDS PERMA_0452 NC_012440.1 406798 406917 D identified by Glimmer3; hypothetical protein 406798..406917 Persephonella marina EX-H1 7675477 YP_002730243.1 CDS PERMA_0453 NC_012440.1 406927 407184 D identified by Glimmer3; hypothetical protein 406927..407184 Persephonella marina EX-H1 7674253 YP_002730244.1 CDS dapB NC_012440.1 407184 407993 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 407184..407993 Persephonella marina EX-H1 7675242 YP_002730245.1 CDS PERMA_0456 NC_012440.1 407997 408239 D ATP synthase protein I 407997..408239 Persephonella marina EX-H1 7674606 YP_002730246.1 CDS PERMA_0455 NC_012440.1 408236 409219 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; phosphoesterase, RecJ domain protein complement(408236..409219) Persephonella marina EX-H1 7674594 YP_002730247.1 CDS nth NC_012440.1 409233 409880 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(409233..409880) Persephonella marina EX-H1 7675128 YP_002730248.1 CDS PERMA_0458 NC_012440.1 409882 410772 R identified by match to protein family HMM PF01367; match to protein family HMM PF02739; DNA polymerase I complement(409882..410772) Persephonella marina EX-H1 7674435 YP_002730249.1 CDS PERMA_0459 NC_012440.1 410781 411566 R identified by match to protein family HMM PF01551; NlpD fragment complement(410781..411566) Persephonella marina EX-H1 7674652 YP_002730250.1 CDS hemB NC_012440.1 411571 412548 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(411571..412548) Persephonella marina EX-H1 7674907 YP_002730251.1 CDS PERMA_0461 NC_012440.1 412594 413298 R identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046; ribosomal RNA small subunit methyltransferase E (16S rRNAm3U1498 methyltransferase) complement(412594..413298) Persephonella marina EX-H1 7675994 YP_002730252.1 CDS PERMA_0462 NC_012440.1 413298 414116 R identified by match to protein family HMM PF00950; ABC transporter complement(413298..414116) Persephonella marina EX-H1 7675619 YP_002730253.1 CDS PERMA_0463 NC_012440.1 414124 414891 R identified by match to protein family HMM PF00005; manganese transport system ATP-binding protein MntA complement(414124..414891) Persephonella marina EX-H1 7674673 YP_002730254.1 CDS PERMA_0464 NC_012440.1 414888 415913 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; alcohol dehydrogenase complement(414888..415913) Persephonella marina EX-H1 7675002 YP_002730255.1 CDS feoB NC_012440.1 415915 418080 R identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B complement(415915..418080) Persephonella marina EX-H1 7676002 YP_002730256.1 CDS PERMA_0466 NC_012440.1 418070 418303 R identified by match to protein family HMM PF04023; hypothetical protein complement(418070..418303) Persephonella marina EX-H1 7675338 YP_002730257.1 CDS PERMA_0467 NC_012440.1 418389 419069 R identified by match to protein family HMM PF02163; membrane-associated zinc metalloprotease complement(418389..419069) Persephonella marina EX-H1 7674979 YP_002730258.1 CDS PERMA_0469 NC_012440.1 419149 420471 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; udp-murnac-pentapeptide sythetase 419149..420471 Persephonella marina EX-H1 7675234 YP_002730259.1 CDS PERMA_0468 NC_012440.1 420446 421114 R identified by Glimmer3; hypothetical protein complement(420446..421114) Persephonella marina EX-H1 7674192 YP_002730260.1 CDS gap NC_012440.1 421179 422186 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 421179..422186 Persephonella marina EX-H1 7674716 YP_002730261.1 CDS PERMA_0471 NC_012440.1 422405 422674 R PIN domain protein complement(422405..422674) Persephonella marina EX-H1 7676071 YP_002730262.1 CDS PERMA_0472 NC_012440.1 422793 423104 R identified by Glimmer3; hypothetical protein complement(422793..423104) Persephonella marina EX-H1 7676076 YP_002730263.1 CDS trpS NC_012440.1 423217 424470 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(423217..424470) Persephonella marina EX-H1 7674602 YP_002730264.1 CDS PERMA_0475 NC_012440.1 424549 426999 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF09369; DEAD/DEAH box helicase 424549..426999 Persephonella marina EX-H1 7675077 YP_002730265.1 CDS PERMA_0474 NC_012440.1 426992 427840 R identified by match to protein family HMM PF02146; Sir2 family transcriptional regulator complement(426992..427840) Persephonella marina EX-H1 7675759 YP_002730266.1 CDS PERMA_0476 NC_012440.1 428614 429453 D hypothetical protein 428614..429453 Persephonella marina EX-H1 7674326 YP_002730267.1 CDS PERMA_0477 NC_012440.1 429875 430273 D identified by Glimmer3; hypothetical protein 429875..430273 Persephonella marina EX-H1 7675494 YP_002730268.1 CDS PERMA_0478 NC_012440.1 430260 430928 D identified by Glimmer3; hypothetical protein 430260..430928 Persephonella marina EX-H1 7674372 YP_002730269.1 CDS PERMA_0479 NC_012440.1 430938 431465 D identified by match to protein family HMM PF01464; membrane-bound lytic murein transglycosylase C 430938..431465 Persephonella marina EX-H1 7675262 YP_002730270.1 CDS PERMA_0480 NC_012440.1 432076 432255 D hypothetical protein 432076..432255 Persephonella marina EX-H1 7674315 YP_002730271.1 CDS PERMA_0481 NC_012440.1 432292 434490 D hypothetical protein 432292..434490 Persephonella marina EX-H1 7675454 YP_002730272.1 CDS PERMA_0482 NC_012440.1 434862 434981 D identified by Glimmer3; hypothetical protein 434862..434981 Persephonella marina EX-H1 7674576 YP_002730273.1 CDS PERMA_0483 NC_012440.1 435281 438094 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR repeat protein 435281..438094 Persephonella marina EX-H1 7675892 YP_002730274.1 CDS PERMA_0484 NC_012440.1 438164 438448 R hypothetical protein complement(438164..438448) Persephonella marina EX-H1 7674439 YP_002730275.1 CDS PERMA_0485 NC_012440.1 439573 440193 R identified by Glimmer3; hypothetical protein complement(439573..440193) Persephonella marina EX-H1 7675971 YP_002730276.1 CDS PERMA_0486 NC_012440.1 440318 440896 R identified by Glimmer3; hypothetical protein complement(440318..440896) Persephonella marina EX-H1 7674552 YP_002730277.1 CDS PERMA_0487 NC_012440.1 440918 441655 R identified by match to protein family HMM PF02633; creatininase complement(440918..441655) Persephonella marina EX-H1 7674385 YP_002730278.1 CDS PERMA_0488 NC_012440.1 441659 441964 R identified by match to protein family HMM PF00633; competence protein ComEA helix-hairpin-helix repeat protein complement(441659..441964) Persephonella marina EX-H1 7675669 YP_002730279.1 CDS PERMA_0489 NC_012440.1 441961 443118 R identified by match to protein family HMM PF09376; NurA domain superfamily complement(441961..443118) Persephonella marina EX-H1 7675495 YP_002730280.1 CDS obgE NC_012440.1 443139 444161 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(443139..444161) Persephonella marina EX-H1 7675407 YP_002730281.1 CDS PERMA_0491 NC_012440.1 444217 446163 R identified by match to protein family HMM PF01935; hypothetical protein complement(444217..446163) Persephonella marina EX-H1 7675478 YP_002730282.1 CDS rpmB NC_012440.1 446247 446441 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(446247..446441) Persephonella marina EX-H1 7674376 YP_002730283.1 CDS PERMA_0493 NC_012440.1 446578 447480 D identified by match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator PleD 446578..447480 Persephonella marina EX-H1 7675786 YP_002730284.1 CDS PERMA_0494 NC_012440.1 447526 448824 D identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; hypothetical protein 447526..448824 Persephonella marina EX-H1 7675425 YP_002730285.1 CDS mtnA NC_012440.1 448897 449958 D identified by match to protein family HMM PF01008; match to protein family HMM TIGR00512; match to protein family HMM TIGR00524; S-methyl-5-thioribose-1-phosphate isomerase 448897..449958 Persephonella marina EX-H1 7675251 YP_002730286.1 CDS PERMA_0496 NC_012440.1 449960 450931 D identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; similar to protein aq_778; hypothetical protein 449960..450931 Persephonella marina EX-H1 7676023 YP_002730287.1 CDS nadB NC_012440.1 450932 452509 D identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR00551; L-aspartate oxidase 450932..452509 Persephonella marina EX-H1 7675420 YP_002730288.1 CDS infC NC_012440.1 452674 453024 D identified by match to protein family HMM PF00707; match to protein family HMM TIGR00168; translation initiation factor IF-3 452674..453024 Persephonella marina EX-H1 7675278 YP_002730289.1 CDS PERMA_0499 NC_012440.1 453108 454280 D identified by match to protein family HMM PF07992; sulfide quinone reductase 453108..454280 Persephonella marina EX-H1 7674805 YP_002730290.1 CDS PERMA_0500 NC_012440.1 454281 454856 R identified by match to protein family HMM PF01066; CDP-alcohol phosphatidyltransferase complement(454281..454856) Persephonella marina EX-H1 7674755 YP_002730291.1 CDS trpF NC_012440.1 454858 455484 R identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase complement(454858..455484) Persephonella marina EX-H1 7674321 YP_002730292.1 CDS PERMA_0502 NC_012440.1 455475 456071 R lipoprotein complement(455475..456071) Persephonella marina EX-H1 7675509 YP_002730293.1 CDS PERMA_0503 NC_012440.1 456068 457747 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(456068..457747) Persephonella marina EX-H1 7674554 YP_002730294.1 CDS PERMA_0504 NC_012440.1 457750 458637 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(457750..458637) Persephonella marina EX-H1 7675125 YP_002730295.1 CDS leuD NC_012440.1 458643 459140 R identified by match to protein family HMM PF00694; match to protein family HMM TIGR02084; match to protein family HMM TIGR02087; 3-isopropylmalate dehydratase, small subunit complement(458643..459140) Persephonella marina EX-H1 7675897 YP_002730296.1 CDS PERMA_0506 NC_012440.1 459252 460268 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; glyoxylate reductase (Glycolate reductase) 459252..460268 Persephonella marina EX-H1 7675830 YP_002730297.1 CDS fabG NC_012440.1 460339 461070 D identified by match to protein family HMM PF00106; match to protein family HMM PF07993; match to protein family HMM PF08659; match to protein family HMM TIGR01830; 3-oxoacyl-ACP reductase 460339..461070 Persephonella marina EX-H1 7674702 YP_002730298.1 CDS acpP NC_012440.1 461109 461339 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 461109..461339 Persephonella marina EX-H1 7674516 YP_002730299.1 CDS fabF NC_012440.1 461346 462590 D identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150; 3-ketoacyl-ACP synthase II 461346..462590 Persephonella marina EX-H1 7674569 YP_002730300.1 CDS rnc NC_012440.1 462580 463329 D identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III 462580..463329 Persephonella marina EX-H1 7675506 YP_002730301.1 CDS PERMA_0510 NC_012440.1 463326 464888 R identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase family protein complement(463326..464888) Persephonella marina EX-H1 7674310 YP_002730302.1 CDS PERMA_0513 NC_012440.1 465062 466432 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; nitrogen assimilation regulatory protein complement(465062..466432) Persephonella marina EX-H1 7674924 YP_002730303.1 CDS PERMA_0514 NC_012440.1 466500 466949 R identified by Glimmer3; hypothetical protein complement(466500..466949) Persephonella marina EX-H1 7675192 YP_002730304.1 CDS PERMA_0515 NC_012440.1 467104 467541 R identified by match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer complement(467104..467541) Persephonella marina EX-H1 7676176 YP_002730305.1 CDS PERMA_0516 NC_012440.1 467559 467921 R identified by Glimmer3; hypothetical protein complement(467559..467921) Persephonella marina EX-H1 7674201 YP_002730306.1 CDS PERMA_0517 NC_012440.1 467987 470275 R identified by match to protein family HMM PF01077; match to protein family HMM PF01206; match to protein family HMM PF03460; ferredoxin-sulfite reductase complement(467987..470275) Persephonella marina EX-H1 7676150 YP_002730307.1 CDS PERMA_0518 NC_012440.1 470515 471522 D hypothetical protein 470515..471522 Persephonella marina EX-H1 7674849 YP_002730308.1 CDS PERMA_0519 NC_012440.1 471535 472242 D identified by match to protein family HMM PF01507; match to protein family HMM TIGR00434; phosphoadenosine phosphosulfate reductase 471535..472242 Persephonella marina EX-H1 7674550 YP_002730309.1 CDS PERMA_0521 NC_012440.1 472243 473007 D identified by match to protein family HMM PF01925; hypothetical protein 472243..473007 Persephonella marina EX-H1 7674763 YP_002730310.1 CDS ksgA NC_012440.1 472960 473757 R identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase complement(472960..473757) Persephonella marina EX-H1 7674960 YP_002730311.1 CDS galU NC_012440.1 473757 474635 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(473757..474635) Persephonella marina EX-H1 7675286 YP_002730312.1 CDS purC NC_012440.1 474639 475355 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(474639..475355) Persephonella marina EX-H1 7674997 YP_002730313.1 CDS PERMA_0524 NC_012440.1 475368 476042 R identified by Glimmer3; hypothetical protein complement(475368..476042) Persephonella marina EX-H1 7675309 YP_002730314.1 CDS PERMA_0525 NC_012440.1 476087 477049 R identified by match to protein family HMM PF01075; ADP-heptose:LPS heptosyltransferase complement(476087..477049) Persephonella marina EX-H1 7674833 YP_002730315.1 CDS PERMA_0526 NC_012440.1 477046 477375 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(477046..477375) Persephonella marina EX-H1 7675799 YP_002730316.1 CDS PERMA_0527 NC_012440.1 477505 477999 D identified by Glimmer3; hypothetical protein 477505..477999 Persephonella marina EX-H1 7675803 YP_002730317.1 CDS PERMA_0528 NC_012440.1 478024 479046 R identified by match to protein family HMM PF02775; pyruvate synthase subunit PorB (Pyruvate oxidoreductasebeta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit beta) complement(478024..479046) Persephonella marina EX-H1 7674825 YP_002730318.1 CDS PERMA_0529 NC_012440.1 479049 480242 R identified by match to protein family HMM PF01855; pyruvate synthase subunit PorA (Pyruvate oxidoreductasealpha chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit alpha) complement(479049..480242) Persephonella marina EX-H1 7675302 YP_002730319.1 CDS PERMA_0530 NC_012440.1 480262 480579 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR02179; pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) complement(480262..480579) Persephonella marina EX-H1 7675552 YP_002730320.1 CDS PERMA_0531 NC_012440.1 480658 481257 R identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175; pyruvate/ketoisovalerate oxidoreductases common subunit gamma complement(480658..481257) Persephonella marina EX-H1 7676168 YP_002730321.1 CDS recR NC_012440.1 481329 481937 R identified by match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615; recombination protein RecR complement(481329..481937) Persephonella marina EX-H1 7674631 YP_002730322.1 CDS PERMA_0533 NC_012440.1 481934 482266 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(481934..482266) Persephonella marina EX-H1 7675146 YP_002730323.1 CDS dnaX NC_012440.1 482267 483706 R identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III, subunits gamma and tau complement(482267..483706) Persephonella marina EX-H1 7674349 YP_002730324.1 CDS PERMA_0535 NC_012440.1 483762 484541 R identified by match to protein family HMM PF01926; GTPase, MMR1/HSR1 family complement(483762..484541) Persephonella marina EX-H1 7675658 YP_002730325.1 CDS PERMA_0537 NC_012440.1 484601 486649 D identified by match to protein family HMM PF03968; match to protein family HMM PF04453; organic solvent tolerance protein 484601..486649 Persephonella marina EX-H1 7675739 YP_002730326.1 CDS PERMA_0536 NC_012440.1 486636 487304 R identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator, IclR family complement(486636..487304) Persephonella marina EX-H1 7675891 YP_002730327.1 CDS miaA NC_012440.1 487381 488301 D identified by match to protein family HMM PF01715; match to protein family HMM TIGR00174; tRNA delta(2)-isopentenylpyrophosphate transferase 487381..488301 Persephonella marina EX-H1 7675769 YP_002730328.1 CDS hfq_1 NC_012440.1 488319 488510 D identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone Hfq 488319..488510 Persephonella marina EX-H1 7674432 YP_002730329.1 CDS hflX NC_012440.1 488532 489653 D identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156; GTP-binding protein HflX 488532..489653 Persephonella marina EX-H1 7675946 YP_002730330.1 CDS PERMA_0541 NC_012440.1 489655 490002 D identified by match to protein family HMM PF01230; histidine triad nucleotide-binding protein 2 489655..490002 Persephonella marina EX-H1 7675364 YP_002730331.1 CDS PERMA_0542 NC_012440.1 489993 490595 D identified by match to protein family HMM PF01206; hypothetical protein 489993..490595 Persephonella marina EX-H1 7674279 YP_002730332.1 CDS PERMA_0543 NC_012440.1 490597 491205 R identified by match to protein family HMM PF08220; match to protein family HMM PF08279; YcnK complement(490597..491205) Persephonella marina EX-H1 7675202 YP_002730333.1 CDS hisB NC_012440.1 491218 491802 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(491218..491802) Persephonella marina EX-H1 7675019 YP_002730334.1 CDS PERMA_0545 NC_012440.1 491814 492539 R identified by match to protein family HMM PF01695; DNA replication protein DnaC complement(491814..492539) Persephonella marina EX-H1 7676173 YP_002730335.1 CDS PERMA_0546 NC_012440.1 492603 492923 R identified by Glimmer3; hypothetical protein complement(492603..492923) Persephonella marina EX-H1 7676160 YP_002730336.1 CDS PERMA_0547 NC_012440.1 492920 493522 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(492920..493522) Persephonella marina EX-H1 7675610 YP_002730337.1 CDS PERMA_0548 NC_012440.1 493519 494400 R identified by match to protein family HMM PF02272; phosphoesterase, dhha1 complement(493519..494400) Persephonella marina EX-H1 7674609 YP_002730338.1 CDS PERMA_0549 NC_012440.1 494600 495589 D identified by match to protein family HMM PF00268; ribonucleoside-diphosphate reductase, betsubunit A 494600..495589 Persephonella marina EX-H1 7675099 YP_002730339.1 CDS PERMA_0550 NC_012440.1 495616 495765 D identified by Glimmer3; hypothetical protein 495616..495765 Persephonella marina EX-H1 7675944 YP_002730340.1 CDS PERMA_0551 NC_012440.1 495815 498229 D identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR02506; ribonucleoside-diphosphate reductase, alphsubunit A 495815..498229 Persephonella marina EX-H1 7676007 YP_002730341.1 CDS PERMA_0552 NC_012440.1 498275 498439 D identified by Glimmer3; hypothetical protein 498275..498439 Persephonella marina EX-H1 7675109 YP_002730342.1 CDS PERMA_0553 NC_012440.1 498699 499745 D hypothetical protein 498699..499745 Persephonella marina EX-H1 7674677 YP_002730343.1 CDS PERMA_0554 NC_012440.1 499862 500212 D MlpB 499862..500212 Persephonella marina EX-H1 7674401 YP_002730344.1 CDS gatB NC_012440.1 500255 501679 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(500255..501679) Persephonella marina EX-H1 7674780 YP_002730345.1 CDS ahcY NC_012440.1 502038 503294 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 502038..503294 Persephonella marina EX-H1 7676025 YP_002730346.1 CDS PERMA_0557 NC_012440.1 503322 503546 D identified by Glimmer3; hypothetical protein 503322..503546 Persephonella marina EX-H1 7675001 YP_002730347.1 CDS ilvD NC_012440.1 503561 505234 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 503561..505234 Persephonella marina EX-H1 7674608 YP_002730348.1 CDS metK NC_012440.1 505255 506385 D identified by match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034; methionine adenosyltransferase 505255..506385 Persephonella marina EX-H1 7675446 YP_002730349.1 CDS PERMA_0561 NC_012440.1 506378 506818 D hypothetical protein 506378..506818 Persephonella marina EX-H1 7674987 YP_002730350.1 CDS lpdA NC_012440.1 506815 508188 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoyl dehydrogenase complement(506815..508188) Persephonella marina EX-H1 7675311 YP_002730351.1 CDS PERMA_0562 NC_012440.1 508200 511598 R Ig family protein complement(508200..511598) Persephonella marina EX-H1 7676175 YP_002730352.1 CDS PERMA_0563 NC_012440.1 511615 513441 R identified by match to protein family HMM PF00263; fimbrial assembly protein PilQ complement(511615..513441) Persephonella marina EX-H1 7674998 YP_002730353.1 CDS PERMA_0564 NC_012440.1 513445 513690 R identified by Glimmer3; hypothetical protein complement(513445..513690) Persephonella marina EX-H1 7674971 YP_002730354.1 CDS PERMA_0565 NC_012440.1 513692 514384 R identified by Glimmer3; hypothetical protein complement(513692..514384) Persephonella marina EX-H1 7675301 YP_002730355.1 CDS PERMA_0566 NC_012440.1 514404 515003 R identified by match to protein family HMM PF05137; Fimbrial assembly protein complement(514404..515003) Persephonella marina EX-H1 7675064 YP_002730356.1 CDS PERMA_0567 NC_012440.1 514996 515949 R identified by Glimmer3; hypothetical protein complement(514996..515949) Persephonella marina EX-H1 7675546 YP_002730357.1 CDS ppsA NC_012440.1 516047 518485 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(516047..518485) Persephonella marina EX-H1 7676125 YP_002730358.1 CDS glyS NC_012440.1 518509 520626 R identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; glycyl-tRNA synthetase, betsubunit A complement(518509..520626) Persephonella marina EX-H1 7674472 YP_002730359.1 CDS glyQ NC_012440.1 520627 521532 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(520627..521532) Persephonella marina EX-H1 7674624 YP_002730360.1 CDS truD NC_012440.1 521597 522769 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(521597..522769) Persephonella marina EX-H1 7675107 YP_002730361.1 CDS PERMA_0572 NC_012440.1 522860 525169 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A 522860..525169 Persephonella marina EX-H1 7675348 YP_002730362.1 CDS trpB NC_012440.1 525181 526425 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 525181..526425 Persephonella marina EX-H1 7675014 YP_002730363.1 CDS PERMA_0574 NC_012440.1 526435 527496 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 526435..527496 Persephonella marina EX-H1 7676054 YP_002730364.1 CDS PERMA_0576 NC_012440.1 527574 529667 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; formate dehydrogenase alpha chain 527574..529667 Persephonella marina EX-H1 7675768 YP_002730365.1 CDS PERMA_0575 NC_012440.1 529624 531534 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator complement(529624..531534) Persephonella marina EX-H1 7675535 YP_002730366.1 CDS PERMA_0577 NC_012440.1 531527 531985 R hypothetical protein complement(531527..531985) Persephonella marina EX-H1 7675464 YP_002730367.1 CDS PERMA_0578 NC_012440.1 531988 533859 R identified by match to protein family HMM PF07715; TonB-dependent receptor plug domain protein complement(531988..533859) Persephonella marina EX-H1 7675674 YP_002730368.1 CDS kdsB NC_012440.1 533898 534653 R identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(533898..534653) Persephonella marina EX-H1 7675280 YP_002730369.1 CDS PERMA_0580 NC_012440.1 534697 535695 R identified by Glimmer3; hypothetical protein complement(534697..535695) Persephonella marina EX-H1 7676080 YP_002730370.1 CDS thiG NC_012440.1 535737 536537 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(535737..536537) Persephonella marina EX-H1 7674203 YP_002730371.1 CDS PERMA_0582 NC_012440.1 536565 537971 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein complement(536565..537971) Persephonella marina EX-H1 7675840 YP_002730372.1 CDS PERMA_0583 NC_012440.1 537982 538602 R heavy-metal-associated domain protein complement(537982..538602) Persephonella marina EX-H1 7675300 YP_002730373.1 CDS fmt NC_012440.1 538712 539647 D identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 538712..539647 Persephonella marina EX-H1 7675162 YP_002730374.1 CDS PERMA_0585 NC_012440.1 539690 540418 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase, TrmH family, group 3 539690..540418 Persephonella marina EX-H1 7676021 YP_002730375.1 CDS petA NC_012440.1 540559 541053 D identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416; ubiquinol-cytochrome c reductase, iron-sulfur subunit 540559..541053 Persephonella marina EX-H1 7674437 YP_002730376.1 CDS PERMA_0587 NC_012440.1 541066 542268 D identified by match to protein family HMM PF00032; match to protein family HMM PF00033; cytochrome B 541066..542268 Persephonella marina EX-H1 7676096 YP_002730377.1 CDS PERMA_0588 NC_012440.1 542268 543125 D ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit 542268..543125 Persephonella marina EX-H1 7674650 YP_002730378.1 CDS proC NC_012440.1 543152 543955 R identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase complement(543152..543955) Persephonella marina EX-H1 7675503 YP_002730379.1 CDS PERMA_0590 NC_012440.1 543948 544565 R identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; DNA polymerase III subunit epsilon complement(543948..544565) Persephonella marina EX-H1 7674574 YP_002730380.1 CDS PERMA_0591 NC_012440.1 544586 545785 R identified by match to protein family HMM PF00999; hypothetical protein complement(544586..545785) Persephonella marina EX-H1 7675532 YP_002730381.1 CDS PERMA_0592 NC_012440.1 545778 547220 R identified by match to protein family HMM PF02080; match to protein family HMM PF02254; TrkA-N domain family protein complement(545778..547220) Persephonella marina EX-H1 7675597 YP_002730382.1 CDS PERMA_0593 NC_012440.1 547285 548529 D hypothetical protein 547285..548529 Persephonella marina EX-H1 7674551 YP_002730383.1 CDS PERMA_0594 NC_012440.1 548543 549205 R identified by Glimmer3; hypothetical protein complement(548543..549205) Persephonella marina EX-H1 7674985 YP_002730384.1 CDS argS NC_012440.1 549207 550865 R identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456; arginyl-tRNA synthetase complement(549207..550865) Persephonella marina EX-H1 7674752 YP_002730385.1 CDS pyrG NC_012440.1 550988 552592 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 550988..552592 Persephonella marina EX-H1 7674897 YP_002730386.1 CDS acsA_1 NC_012440.1 552648 554543 D identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188; acetate--CoA ligase 552648..554543 Persephonella marina EX-H1 7674818 YP_002730387.1 CDS hslU NC_012440.1 554606 555952 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 554606..555952 Persephonella marina EX-H1 7674455 YP_002730388.1 CDS PERMA_0599 NC_012440.1 555966 556196 D chaperone protein DnaK (Heat shock protein 70) (Heat shock 70 kDaprotein) (HSP70) 555966..556196 Persephonella marina EX-H1 7675951 YP_002730389.1 CDS PERMA_0600 NC_012440.1 556207 556509 D identified by match to protein family HMM PF01037; hypothetical protein 556207..556509 Persephonella marina EX-H1 7675257 YP_002730390.1 CDS PERMA_0601 NC_012440.1 556512 556928 R lipoprotein complement(556512..556928) Persephonella marina EX-H1 7675144 YP_002730391.1 CDS PERMA_0602 NC_012440.1 556964 557206 R identified by Glimmer3; hypothetical protein complement(556964..557206) Persephonella marina EX-H1 7674731 YP_002730392.1 CDS PERMA_0603 NC_012440.1 557359 557610 R identified by Glimmer3; hypothetical protein complement(557359..557610) Persephonella marina EX-H1 7675588 YP_002730393.1 CDS smpB NC_012440.1 557635 558093 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(557635..558093) Persephonella marina EX-H1 7675368 YP_002730394.1 CDS PERMA_0605 NC_012440.1 558173 561085 D identified by match to protein family HMM PF00595; match to protein family HMM PF01433; match to protein family HMM PF04187; peptidase M1, membrane alanine aminopeptidase 558173..561085 Persephonella marina EX-H1 7674583 YP_002730395.1 CDS purB NC_012440.1 561130 562440 D identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928; adenylosuccinate lyase 561130..562440 Persephonella marina EX-H1 7674389 YP_002730396.1 CDS PERMA_0607 NC_012440.1 562437 563096 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; endonuclease III (DNA-(apurinic orapyrimidinic site) lyase) 562437..563096 Persephonella marina EX-H1 7675680 YP_002730397.1 CDS PERMA_0608 NC_012440.1 563097 563273 R identified by Glimmer3; hypothetical protein complement(563097..563273) Persephonella marina EX-H1 7674199 YP_002730398.1 CDS nadE NC_012440.1 563284 565008 R identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; glutamine-dependent NAD+ synthetase complement(563284..565008) Persephonella marina EX-H1 7674708 YP_002730399.1 CDS PERMA_0610 NC_012440.1 565096 566319 D identified by match to protein family HMM PF00563; match to protein family HMM PF08668; EAL domain protein 565096..566319 Persephonella marina EX-H1 7675935 YP_002730400.1 CDS PERMA_0611 NC_012440.1 566365 567261 D identified by Glimmer3; hypothetical protein 566365..567261 Persephonella marina EX-H1 7675402 YP_002730401.1 CDS PERMA_0612 NC_012440.1 567274 567630 D identified by Glimmer3; hypothetical protein 567274..567630 Persephonella marina EX-H1 7675966 YP_002730402.1 CDS PERMA_0613 NC_012440.1 567631 567924 D identified by Glimmer3; hypothetical protein 567631..567924 Persephonella marina EX-H1 7675864 YP_002730403.1 CDS PERMA_0614 NC_012440.1 567990 570140 D identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 567990..570140 Persephonella marina EX-H1 7675889 YP_002730404.1 CDS plsY NC_012440.1 570141 570734 R identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; acyl-phosphate glycerol 3-phosphate acyltransferase complement(570141..570734) Persephonella marina EX-H1 7674244 YP_002730405.1 CDS pgsA_1 NC_012440.1 570725 571243 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(570725..571243) Persephonella marina EX-H1 7675376 YP_002730406.1 CDS ftsZ NC_012440.1 571240 572379 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(571240..572379) Persephonella marina EX-H1 7674572 YP_002730407.1 CDS ftsA NC_012440.1 572399 573637 R identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA complement(572399..573637) Persephonella marina EX-H1 7674787 YP_002730408.1 CDS PERMA_0619 NC_012440.1 573641 574324 R identified by match to protein family HMM PF08478; polypeptide-transport-associated domain protein FtsQ-type complement(573641..574324) Persephonella marina EX-H1 7675689 YP_002730409.1 CDS PERMA_0620 NC_012440.1 574311 575222 R identified by match to protein family HMM PF01071; match to protein family HMM PF01820; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF07478; match to protein family HMM PF08443; match to protein family HMM TIGR01205; D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) complement(574311..575222) Persephonella marina EX-H1 7675447 YP_002730410.1 CDS murB NC_012440.1 575215 576081 R identified by match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179; UDP-N-acetylenolpyruvoylglucosamine reductase complement(575215..576081) Persephonella marina EX-H1 7674615 YP_002730411.1 CDS murG NC_012440.1 576068 577120 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase complement(576068..577120) Persephonella marina EX-H1 7675198 YP_002730412.1 CDS PERMA_0623 NC_012440.1 577117 578235 R identified by match to protein family HMM PF01098; cell cycle protein complement(577117..578235) Persephonella marina EX-H1 7674294 YP_002730413.1 CDS murD NC_012440.1 578228 579487 R identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01087; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(578228..579487) Persephonella marina EX-H1 7674739 YP_002730414.1 CDS oadA NC_012440.1 579574 581415 D catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 579574..581415 Persephonella marina EX-H1 7674841 YP_002730415.1 CDS PERMA_0626 NC_012440.1 581432 582049 R identified by Glimmer3; hypothetical protein complement(581432..582049) Persephonella marina EX-H1 7676074 YP_002730416.1 CDS gltA NC_012440.1 582144 583598 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316; glutamate synthase (NADPH), homotetrameric complement(582144..583598) Persephonella marina EX-H1 7674210 YP_002730417.1 CDS argF NC_012440.1 583612 584520 R identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658; ornithine carbamoyltransferase complement(583612..584520) Persephonella marina EX-H1 7675396 YP_002730418.1 CDS pyrB NC_012440.1 584611 585519 R identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; aspartate carbamoyltransferase complement(584611..585519) Persephonella marina EX-H1 7674558 YP_002730419.1 CDS PERMA_0630 NC_012440.1 585568 587532 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor complement(585568..587532) Persephonella marina EX-H1 7676055 YP_002730420.1 CDS truB NC_012440.1 587544 588425 R identified by match to protein family HMM PF01509; match to protein family HMM PF09157; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B complement(587544..588425) Persephonella marina EX-H1 7674772 YP_002730421.1 CDS PERMA_0632 NC_012440.1 588438 589658 R identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; folylpolyglutamate synthetase complement(588438..589658) Persephonella marina EX-H1 7674711 YP_002730422.1 CDS lgt NC_012440.1 589655 590431 R identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase complement(589655..590431) Persephonella marina EX-H1 7674856 YP_002730423.1 CDS def_2 NC_012440.1 590444 590974 R identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase complement(590444..590974) Persephonella marina EX-H1 7676067 YP_002730424.1 CDS rpe NC_012440.1 590977 591654 R identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase complement(590977..591654) Persephonella marina EX-H1 7674237 YP_002730425.1 CDS cdsA_2 NC_012440.1 591740 592366 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 591740..592366 Persephonella marina EX-H1 7674636 YP_002730426.1 CDS PERMA_0636 NC_012440.1 592319 592642 R identified by match to protein family HMM PF01883; protein containing DUF59 complement(592319..592642) Persephonella marina EX-H1 7674732 YP_002730427.1 CDS pyrC NC_012440.1 592646 593923 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(592646..593923) Persephonella marina EX-H1 7675835 YP_002730428.1 CDS lepB NC_012440.1 593978 594679 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I complement(593978..594679) Persephonella marina EX-H1 7675138 YP_002730429.1 CDS PERMA_0640 NC_012440.1 594696 595274 R identified by match to protein family HMM PF00565; thermonuclease complement(594696..595274) Persephonella marina EX-H1 7675676 YP_002730430.1 CDS purE NC_012440.1 595264 595764 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(595264..595764) Persephonella marina EX-H1 7675716 YP_002730431.1 CDS PERMA_0642 NC_012440.1 595776 600179 R identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase [NADPH] large chain (nadph-gogat) complement(595776..600179) Persephonella marina EX-H1 7674270 YP_002730432.1 CDS truA NC_012440.1 600337 601071 D identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A 600337..601071 Persephonella marina EX-H1 7675020 YP_002730433.1 CDS era NC_012440.1 601083 602000 D identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; GTP-binding protein Era 601083..602000 Persephonella marina EX-H1 7675318 YP_002730434.1 CDS mgtE NC_012440.1 602009 603379 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 602009..603379 Persephonella marina EX-H1 7675611 YP_002730435.1 CDS PERMA_0646 NC_012440.1 603380 604651 R identified by match to protein family HMM PF00015; Methyl-accepting chemotaxis protein signaling domain protein complement(603380..604651) Persephonella marina EX-H1 7676182 YP_002730436.1 CDS PERMA_0647 NC_012440.1 604710 606005 R catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta complement(604710..606005) Persephonella marina EX-H1 7674276 YP_002730437.1 CDS fabD NC_012440.1 606060 607040 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 606060..607040 Persephonella marina EX-H1 7675100 YP_002730438.1 CDS bioD NC_012440.1 607037 607714 D identified by match to protein family HMM TIGR00347; dethiobiotin synthase 607037..607714 Persephonella marina EX-H1 7674384 YP_002730439.1 CDS PERMA_0651 NC_012440.1 607714 608436 D identified by match to protein family HMM PF01904; hypothetical protein 607714..608436 Persephonella marina EX-H1 7674407 YP_002730440.1 CDS PERMA_0650 NC_012440.1 608416 609675 R hypothetical protein complement(608416..609675) Persephonella marina EX-H1 7675664 YP_002730441.1 CDS PERMA_0652 NC_012440.1 609659 610105 R identified by match to protein family HMM PF05866; crossover junction endodeoxyribonuclease RusA (Hollidayjunction nuclease rusA) (Holliday junction resolvase) complement(609659..610105) Persephonella marina EX-H1 7675265 YP_002730442.1 CDS PERMA_0653 NC_012440.1 610422 611387 D identified by match to protein family HMM PF00581; rhodanese domain protein 610422..611387 Persephonella marina EX-H1 7675512 YP_002730443.1 CDS PERMA_0654 NC_012440.1 611434 612573 D hypothetical protein 611434..612573 Persephonella marina EX-H1 7675044 YP_002730444.1 CDS PERMA_0655 NC_012440.1 612598 612750 D identified by Glimmer3; hypothetical protein 612598..612750 Persephonella marina EX-H1 7674751 YP_002730445.1 CDS PERMA_0656 NC_012440.1 612747 613247 D identified by Glimmer3; hypothetical protein 612747..613247 Persephonella marina EX-H1 7674440 YP_002730446.1 CDS PERMA_0657 NC_012440.1 613234 616185 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01409; dimethylsulfide dehydrogenase subunit alpha (Dimethylsulfide dehydrogenase molybdenum subunit) (DMS DH alphasubunit) (DMS DH molybdenum subunit) 613234..616185 Persephonella marina EX-H1 7676052 YP_002730447.1 CDS PERMA_0658 NC_012440.1 616203 617345 D identified by match to protein family HMM TIGR03478; respiratory nitrate reductase 1 beta chain (Nitratereductase subunit A beta) (Quinol-nitrate oxidoreductase subunitbeta) 616203..617345 Persephonella marina EX-H1 7674653 YP_002730448.1 CDS PERMA_0659 NC_012440.1 617372 618577 D identified by match to protein family HMM PF09459; ethylbenzene dehydrogenase family 617372..618577 Persephonella marina EX-H1 7674623 YP_002730449.1 CDS PERMA_0660 NC_012440.1 618592 619065 D identified by Glimmer3; hypothetical protein 618592..619065 Persephonella marina EX-H1 7674269 YP_002730450.1 CDS PERMA_0661 NC_012440.1 619089 619724 D identified by match to protein family HMM PF00037; sulfur reductase FeS subunit 619089..619724 Persephonella marina EX-H1 7675986 YP_002730451.1 CDS PERMA_0662 NC_012440.1 619727 620611 D identified by match to protein family HMM PF03916; polysulfide reductase NrfD 619727..620611 Persephonella marina EX-H1 7675707 YP_002730452.1 CDS PERMA_0663 NC_012440.1 620630 623905 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; molybdopterin oxidoreductase 620630..623905 Persephonella marina EX-H1 7675869 YP_002730453.1 CDS PERMA_0664 NC_012440.1 623942 624571 D hypothetical protein 623942..624571 Persephonella marina EX-H1 7675976 YP_002730454.1 CDS PERMA_0665 NC_012440.1 624607 625689 D identified by match to protein family HMM PF00037; 4Fe-4S binding domain protein 624607..625689 Persephonella marina EX-H1 7675507 YP_002730455.1 CDS PERMA_0666 NC_012440.1 625826 627160 D identified by match to protein family HMM PF03349; aromatic hydrocarbon degradation membrane protein 625826..627160 Persephonella marina EX-H1 7675851 YP_002730456.1 CDS PERMA_0667 NC_012440.1 627190 627681 D identified by match to protein family HMM PF02036; SCP-2 sterol transfer family protein 627190..627681 Persephonella marina EX-H1 7674842 YP_002730457.1 CDS PERMA_0668 NC_012440.1 627829 628848 D identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698; membrane protein 627829..628848 Persephonella marina EX-H1 7675985 YP_002730458.1 CDS PERMA_0669 NC_012440.1 629460 630563 D methyltransferase type 11 629460..630563 Persephonella marina EX-H1 7675983 YP_002730459.1 CDS PERMA_0670 NC_012440.1 630551 630928 D identified by match to protein family HMM PF01230; protein hit 630551..630928 Persephonella marina EX-H1 7674250 YP_002730460.1 CDS PERMA_0671 NC_012440.1 630948 631223 D identified by Glimmer3; hypothetical protein 630948..631223 Persephonella marina EX-H1 7674275 YP_002730461.1 CDS PERMA_0673 NC_012440.1 631725 632114 R identified by match to protein family HMM PF03061; nter region of initiation factor eif-2b alphsubunit A 1 complement(631725..632114) Persephonella marina EX-H1 7674917 YP_002730462.1 CDS PERMA_0674 NC_012440.1 632092 633807 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; division specific D,D-transpeptidase complement(632092..633807) Persephonella marina EX-H1 7674643 YP_002730463.1 CDS ftsL NC_012440.1 633818 634123 R identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209; cell division protein FtsL complement(633818..634123) Persephonella marina EX-H1 7675448 YP_002730464.1 CDS mraW NC_012440.1 634125 635006 R identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(634125..635006) Persephonella marina EX-H1 7676136 YP_002730465.1 CDS PERMA_0677 NC_012440.1 635009 635785 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(635009..635785) Persephonella marina EX-H1 7674443 YP_002730466.1 CDS PERMA_0678 NC_012440.1 635775 636245 R identified by Glimmer3; hypothetical protein complement(635775..636245) Persephonella marina EX-H1 7675210 YP_002730467.1 CDS PERMA_0679 NC_012440.1 636242 637627 R identified by Glimmer3; hypothetical protein complement(636242..637627) Persephonella marina EX-H1 7674857 YP_002730468.1 CDS PERMA_0680 NC_012440.1 637642 638313 R identified by match to protein family HMM PF00005; macrolide export ATP-binding/permease protein MacB complement(637642..638313) Persephonella marina EX-H1 7674479 YP_002730469.1 CDS PERMA_0681 NC_012440.1 638310 639560 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; secretion protein HlyD complement(638310..639560) Persephonella marina EX-H1 7676103 YP_002730470.1 CDS PERMA_0682 NC_012440.1 639545 640807 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(639545..640807) Persephonella marina EX-H1 7676035 YP_002730471.1 CDS PERMA_0683 NC_012440.1 640810 641301 R identified by Glimmer3; hypothetical protein complement(640810..641301) Persephonella marina EX-H1 7675609 YP_002730472.1 CDS ileS NC_012440.1 641430 644273 D identified by match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392; isoleucine#tRNA ligase 641430..644273 Persephonella marina EX-H1 7674544 YP_002730473.1 CDS PERMA_0685 NC_012440.1 644270 644557 D identified by match to protein family HMM PF00216; DNA-binding protein HU 1 (DNA-binding protein II) (HB) 644270..644557 Persephonella marina EX-H1 7675529 YP_002730474.1 CDS PERMA_0686 NC_012440.1 644566 645126 R identified by match to protein family HMM PF08645; match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; D,D-heptose 1,7-bisphosphate phosphatase complement(644566..645126) Persephonella marina EX-H1 7674773 YP_002730475.1 CDS PERMA_0687 NC_012440.1 645127 645612 R identified by Glimmer3; hypothetical protein complement(645127..645612) Persephonella marina EX-H1 7674521 YP_002730476.1 CDS PERMA_0688 NC_012440.1 645663 645824 R identified by Glimmer3; hypothetical protein complement(645663..645824) Persephonella marina EX-H1 7675993 YP_002730477.1 CDS PERMA_0689 NC_012440.1 645928 646413 D identified by match to protein family HMM PF02943; ferredoxin-thioredoxin reductase catalytic subunit 645928..646413 Persephonella marina EX-H1 7675808 YP_002730478.1 CDS PERMA_0691 NC_012440.1 646410 646652 D identified by Glimmer3; hypothetical protein 646410..646652 Persephonella marina EX-H1 7674438 YP_002730479.1 CDS PERMA_0690 NC_012440.1 646645 647931 R identified by match to protein family HMM PF00374; nickel-dependent hydrogenase large subunit complement(646645..647931) Persephonella marina EX-H1 7674973 YP_002730480.1 CDS PERMA_0692 NC_012440.1 647928 648677 R identified by match to protein family HMM PF01058; [NiFe] hydrogenase, deltsubunit A complement(647928..648677) Persephonella marina EX-H1 7675718 YP_002730481.1 CDS PERMA_0693 NC_012440.1 648674 649480 R identified by match to protein family HMM PF00175; match to protein family HMM PF00970; [NiFe] hydrogenasegammsubunit A complement(648674..649480) Persephonella marina EX-H1 7675355 YP_002730482.1 CDS PERMA_0694 NC_012440.1 649473 650564 R [NiFe] hydrogenase, betsubunit A complement(649473..650564) Persephonella marina EX-H1 7674471 YP_002730483.1 CDS PERMA_0695 NC_012440.1 650713 651957 D identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound hydrogenase small subunit) (Hydrogen:quinoneoxidoreductase) 650713..651957 Persephonella marina EX-H1 7675559 YP_002730484.1 CDS PERMA_0696 NC_012440.1 651978 653738 D identified by match to protein family HMM PF00374; uptake hydrogenase large subunit (Hydrogenlyase)(Membrane-bound hydrogenase large subunit) 651978..653738 Persephonella marina EX-H1 7674974 YP_002730485.1 CDS PERMA_0697 NC_012440.1 653731 654420 D identified by match to protein family HMM PF01292; Ni-Fe hydrogenase, cytochrome B subunit 653731..654420 Persephonella marina EX-H1 7675323 YP_002730486.1 CDS PERMA_0698 NC_012440.1 654495 654872 D hypothetical protein 654495..654872 Persephonella marina EX-H1 7674482 YP_002730487.1 CDS PERMA_0699 NC_012440.1 654856 655770 D identified by match to protein family HMM PF00092; von Willebrand factor type A domain protein 654856..655770 Persephonella marina EX-H1 7676162 YP_002730488.1 CDS PERMA_0700 NC_012440.1 655763 657274 D identified by Glimmer3; hypothetical protein 655763..657274 Persephonella marina EX-H1 7675090 YP_002730489.1 CDS PERMA_0701 NC_012440.1 657275 658615 D identified by match to protein family HMM PF00092; von Willebrand factor, type A 657275..658615 Persephonella marina EX-H1 7674491 YP_002730490.1 CDS moxR NC_012440.1 658684 659649 D identified by match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase, MoxR family 658684..659649 Persephonella marina EX-H1 7676121 YP_002730491.1 CDS PERMA_0703 NC_012440.1 659646 660452 D hypothetical protein 659646..660452 Persephonella marina EX-H1 7675677 YP_002730492.1 CDS hypF NC_012440.1 660513 662756 D identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; (NiFe) hydrogenase maturation protein HypF 660513..662756 Persephonella marina EX-H1 7675928 YP_002730493.1 CDS PERMA_0704 NC_012440.1 662745 663059 R identified by Glimmer3; hypothetical protein complement(662745..663059) Persephonella marina EX-H1 7675856 YP_002730494.1 CDS flhB NC_012440.1 663123 664172 R identified by match to protein family HMM PF01312; match to protein family HMM TIGR00328; flagellar biosynthetic protein FlhB complement(663123..664172) Persephonella marina EX-H1 7675382 YP_002730495.1 CDS PERMA_0707 NC_012440.1 664173 664955 R identified by match to protein family HMM PF01311; flagellar biosynthetic protein FliR complement(664173..664955) Persephonella marina EX-H1 7674309 YP_002730496.1 CDS fliQ NC_012440.1 664958 665227 R identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402; flagellar biosynthetic protein FliQ complement(664958..665227) Persephonella marina EX-H1 7675866 YP_002730497.1 CDS fliP NC_012440.1 665235 665903 R identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103; flagellar biosynthetic protein FliP complement(665235..665903) Persephonella marina EX-H1 7674758 YP_002730498.1 CDS PERMA_0710 NC_012440.1 665929 666231 R identified by Glimmer3; hypothetical protein complement(665929..666231) Persephonella marina EX-H1 7674226 YP_002730499.1 CDS PERMA_0711 NC_012440.1 666224 666463 R identified by match to protein family HMM PF01052; flagellar motor switch phosphatase FliY complement(666224..666463) Persephonella marina EX-H1 7675841 YP_002730500.1 CDS fliL NC_012440.1 666472 666984 R identified by match to protein family HMM PF03748; flagellar basal body-associated protein FliL complement(666472..666984) Persephonella marina EX-H1 7674882 YP_002730501.1 CDS PERMA_0713 NC_012440.1 667007 668629 R identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559; match to protein family HMM TIGR03506; flagellar basal body and hook protein FlgE complement(667007..668629) Persephonella marina EX-H1 7675681 YP_002730502.1 CDS PERMA_0714 NC_012440.1 668634 669281 R identified by match to protein family HMM PF03963; flagellar hook capping protein FlgD complement(668634..669281) Persephonella marina EX-H1 7675363 YP_002730503.1 CDS fliI NC_012440.1 669259 670590 R identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496; flagellar protein export ATPase FliI complement(669259..670590) Persephonella marina EX-H1 7674506 YP_002730504.1 CDS PERMA_0716 NC_012440.1 670550 671227 R identified by Glimmer3; hypothetical protein complement(670550..671227) Persephonella marina EX-H1 7676083 YP_002730505.1 CDS fliF NC_012440.1 671229 672818 R identified by match to protein family HMM PF01514; match to protein family HMM PF08345; match to protein family HMM TIGR00206; flagellar M-ring protein FliF complement(671229..672818) Persephonella marina EX-H1 7674968 YP_002730506.1 CDS fliE NC_012440.1 672831 673115 R identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205; flagellar hook-basal body complex protein FliE complement(672831..673115) Persephonella marina EX-H1 7675330 YP_002730507.1 CDS flgC NC_012440.1 673137 673547 R identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395; flagellar basal-body rod protein FlgC complement(673137..673547) Persephonella marina EX-H1 7674980 YP_002730508.1 CDS flgB NC_012440.1 673562 673939 R identified by match to protein family HMM TIGR01396; flagellar basal-body rod protein FlgB complement(673562..673939) Persephonella marina EX-H1 7675296 YP_002730509.1 CDS PERMA_0721 NC_012440.1 673936 675888 R hypothetical protein complement(673936..675888) Persephonella marina EX-H1 7675831 YP_002730510.1 CDS PERMA_0722 NC_012440.1 675875 677566 R identified by Glimmer3; hypothetical protein complement(675875..677566) Persephonella marina EX-H1 7674657 YP_002730511.1 CDS PERMA_0723 NC_012440.1 677627 678256 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; RNA polymerase sigma factor for flagellar operon complement(677627..678256) Persephonella marina EX-H1 7674720 YP_002730512.1 CDS PERMA_0724 NC_012440.1 678260 679117 R identified by match to protein family HMM PF01656; flagellar biosynthesis switch protein FlhG complement(678260..679117) Persephonella marina EX-H1 7674189 YP_002730513.1 CDS flhF NC_012440.1 679128 680252 R identified by match to protein family HMM PF00448; match to protein family HMM TIGR03499; flagellar biosynthetic protein FlhF complement(679128..680252) Persephonella marina EX-H1 7674325 YP_002730514.1 CDS flhA NC_012440.1 680242 682329 R identified by match to protein family HMM PF00771; match to protein family HMM TIGR01398; flagellar biosynthesis protein FlhA complement(680242..682329) Persephonella marina EX-H1 7675268 YP_002730515.1 CDS PERMA_0727 NC_012440.1 682330 682617 R hypothetical protein complement(682330..682617) Persephonella marina EX-H1 7674286 YP_002730516.1 CDS flgI NC_012440.1 682627 683715 R identified by match to protein family HMM PF02119; flagellar P-ring protein FlgI complement(682627..683715) Persephonella marina EX-H1 7675226 YP_002730517.1 CDS flgH NC_012440.1 683725 684180 R identified by match to protein family HMM PF02107; flagellar L-ring protein FlgH complement(683725..684180) Persephonella marina EX-H1 7675735 YP_002730518.1 CDS PERMA_0730 NC_012440.1 684366 685304 R identified by match to protein family HMM PF08666; match to protein family HMM TIGR03170; flagellar protein FlgA complement(684366..685304) Persephonella marina EX-H1 7674585 YP_002730519.1 CDS flgG NC_012440.1 685285 686085 R identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02488; match to protein family HMM TIGR03506; flagellar basal-body rod protein FlgG complement(685285..686085) Persephonella marina EX-H1 7676118 YP_002730520.1 CDS PERMA_0732 NC_012440.1 686101 686817 R identified by match to protein family HMM PF00460; match to protein family HMM TIGR03506; flagellar basal-body rod protein FlgF complement(686101..686817) Persephonella marina EX-H1 7675074 YP_002730521.1 CDS PERMA_0733 NC_012440.1 686871 687443 R identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480; flagellar motor switch protein FliN complement(686871..687443) Persephonella marina EX-H1 7674383 YP_002730522.1 CDS fliM NC_012440.1 687436 688407 R identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397; flagellar motor switch protein FliM complement(687436..688407) Persephonella marina EX-H1 7675842 YP_002730523.1 CDS fliG NC_012440.1 688419 689444 R identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207; flagellar motor switch protein FliG complement(688419..689444) Persephonella marina EX-H1 7675666 YP_002730524.1 CDS PERMA_0736 NC_012440.1 689446 690096 R identified by Glimmer3; hypothetical protein complement(689446..690096) Persephonella marina EX-H1 7674981 YP_002730525.1 CDS PERMA_0737 NC_012440.1 690089 691885 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis transducer complement(690089..691885) Persephonella marina EX-H1 7675340 YP_002730526.1 CDS PERMA_0738 NC_012440.1 691888 693792 R identified by match to protein family HMM PF00015; Methyl-accepting chemotaxis protein signaling domain protein complement(691888..693792) Persephonella marina EX-H1 7674478 YP_002730527.1 CDS PERMA_0739 NC_012440.1 693824 694219 R identified by match to protein family HMM PF00072; chemotactic response regulator CheY complement(693824..694219) Persephonella marina EX-H1 7674865 YP_002730528.1 CDS PERMA_0740 NC_012440.1 694230 695192 R identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotactic response regulator CheV complement(694230..695192) Persephonella marina EX-H1 7675906 YP_002730529.1 CDS PERMA_0741 NC_012440.1 695214 695708 R identified by match to protein family HMM PF01584; purine-binding chemotaxis protein CheW complement(695214..695708) Persephonella marina EX-H1 7676186 YP_002730530.1 CDS PERMA_0742 NC_012440.1 695708 697687 R identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA complement(695708..697687) Persephonella marina EX-H1 7674514 YP_002730531.1 CDS PERMA_0743 NC_012440.1 697709 698233 R myosin-2 heavy chain, non muscle complement(697709..698233) Persephonella marina EX-H1 7676167 YP_002730532.1 CDS PERMA_0744 NC_012440.1 698214 699245 R identified by match to protein family HMM PF00072; match to protein family HMM PF01339; chemotaxis response regulator protein-glutamate methylesterase complement(698214..699245) Persephonella marina EX-H1 7675809 YP_002730533.1 CDS cheR NC_012440.1 699242 700009 R identified by match to protein family HMM PF01739; chemotaxis protein CheR complement(699242..700009) Persephonella marina EX-H1 7674621 YP_002730534.1 CDS PERMA_0746 NC_012440.1 700073 700426 D hypothetical protein 700073..700426 Persephonella marina EX-H1 7674678 YP_002730535.1 CDS PERMA_0747 NC_012440.1 700443 701753 R identified by match to protein family HMM PF02040; match to protein family HMM PF03600; arsenic transporter family protein complement(700443..701753) Persephonella marina EX-H1 7674966 YP_002730536.1 CDS PERMA_0748 NC_012440.1 701791 702525 R identified by Glimmer3; hypothetical protein complement(701791..702525) Persephonella marina EX-H1 7676011 YP_002730537.1 CDS PERMA_0749 NC_012440.1 702671 703537 R identified by match to protein family HMM PF01435; protease HtpX homolog complement(702671..703537) Persephonella marina EX-H1 7675594 YP_002730538.1 CDS PERMA_0750 NC_012440.1 703652 705337 D identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase domain 1 703652..705337 Persephonella marina EX-H1 7676116 YP_002730539.1 CDS dnaK NC_012440.1 705358 707226 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(705358..707226) Persephonella marina EX-H1 7674345 YP_002730540.1 CDS PERMA_0752 NC_012440.1 707369 707878 D hypothetical protein 707369..707878 Persephonella marina EX-H1 7675852 YP_002730541.1 CDS PERMA_0753 NC_012440.1 707878 709566 D identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase, Snf2 family 707878..709566 Persephonella marina EX-H1 7675522 YP_002730542.1 CDS PERMA_0754 NC_012440.1 709577 710965 D identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229; potential sensory protein 709577..710965 Persephonella marina EX-H1 7675240 YP_002730543.1 CDS PERMA_0755 NC_012440.1 710976 711299 D identified by match to protein family HMM PF03091; periplasmic divalent cation tolerance protein 710976..711299 Persephonella marina EX-H1 7674666 YP_002730544.1 CDS PERMA_0756 NC_012440.1 711342 712208 D identified by match to protein family HMM PF01145; band 7 protein 711342..712208 Persephonella marina EX-H1 7675460 YP_002730545.1 CDS PERMA_0757 NC_012440.1 712361 715348 D identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; ClpB 712361..715348 Persephonella marina EX-H1 7674473 YP_002730546.1 CDS mutS NC_012440.1 715370 717982 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(715370..717982) Persephonella marina EX-H1 7675883 YP_002730547.1 CDS PERMA_0759 NC_012440.1 718014 718841 R identified by match to protein family HMM PF01551; peptidase, M23/M37 family complement(718014..718841) Persephonella marina EX-H1 7675173 YP_002730548.1 CDS miaB NC_012440.1 718924 720240 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 718924..720240 Persephonella marina EX-H1 7674267 YP_002730549.1 CDS PERMA_0762 NC_012440.1 720257 720736 D identified by match to protein family HMM PF02577; hypothetical protein 720257..720736 Persephonella marina EX-H1 7674452 YP_002730550.1 CDS PERMA_0761 NC_012440.1 720733 721674 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(720733..721674) Persephonella marina EX-H1 7674211 YP_002730551.1 CDS plsX NC_012440.1 721680 722696 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(721680..722696) Persephonella marina EX-H1 7675992 YP_002730552.1 CDS rpmF NC_012440.1 722697 722879 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(722697..722879) Persephonella marina EX-H1 7676040 YP_002730553.1 CDS dapC NC_012440.1 723119 724294 R identified by match to protein family HMM PF00155; match to protein family HMM TIGR03537; succinyldiaminopimelate transaminase complement(723119..724294) Persephonella marina EX-H1 7674937 YP_002730554.1 CDS PERMA_0767 NC_012440.1 724369 724935 D identified by Glimmer3; hypothetical protein 724369..724935 Persephonella marina EX-H1 7675401 YP_002730555.1 CDS PERMA_0769 NC_012440.1 724898 725629 D identified by match to protein family HMM PF00106; oxidoreductase, short chain dehydrogenase/reductase family 724898..725629 Persephonella marina EX-H1 7675252 YP_002730556.1 CDS PERMA_0768 NC_012440.1 725626 726537 R identified by match to protein family HMM PF03631; hypothetical protein complement(725626..726537) Persephonella marina EX-H1 7674694 YP_002730557.1 CDS PERMA_0770 NC_012440.1 726534 726827 R hypothetical protein complement(726534..726827) Persephonella marina EX-H1 7674864 YP_002730558.1 CDS PERMA_0771 NC_012440.1 726837 727121 R hypothetical protein complement(726837..727121) Persephonella marina EX-H1 7674867 YP_002730559.1 CDS PERMA_0772 NC_012440.1 727132 727371 R identified by Glimmer3; hypothetical protein complement(727132..727371) Persephonella marina EX-H1 7675854 YP_002730560.1 CDS PERMA_0773 NC_012440.1 727385 727771 R identified by match to protein family HMM PF02566; OsmC family protein complement(727385..727771) Persephonella marina EX-H1 7676010 YP_002730561.1 CDS PERMA_0774 NC_012440.1 727781 728638 R identified by match to protein family HMM PF01145; band 7 protein complement(727781..728638) Persephonella marina EX-H1 7675061 YP_002730562.1 CDS PERMA_0776 NC_012440.1 728746 728925 D identified by Glimmer3; hypothetical protein 728746..728925 Persephonella marina EX-H1 7675314 YP_002730563.1 CDS PERMA_0775 NC_012440.1 728922 729077 R identified by Glimmer3; hypothetical protein complement(728922..729077) Persephonella marina EX-H1 7675696 YP_002730564.1 CDS uvrB NC_012440.1 729135 731123 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(729135..731123) Persephonella marina EX-H1 7675604 YP_002730565.1 CDS PERMA_0778 NC_012440.1 731197 731808 D identified by match to protein family HMM PF01596; O-methyltransferase, family 3 731197..731808 Persephonella marina EX-H1 7675015 YP_002730566.1 CDS PERMA_0779 NC_012440.1 731969 732859 R identified by match to protein family HMM PF00535; glycosyl transferase, family 2 complement(731969..732859) Persephonella marina EX-H1 7675862 YP_002730567.1 CDS PERMA_0780 NC_012440.1 732861 733619 R identified by match to protein family HMM PF00535; lipopolysaccharide core biosynthesis glycosyltransferase WaaE complement(732861..733619) Persephonella marina EX-H1 7675777 YP_002730568.1 CDS moaA NC_012440.1 733685 734650 R identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A complement(733685..734650) Persephonella marina EX-H1 7674862 YP_002730569.1 CDS PERMA_0782 NC_012440.1 734792 735625 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein complement(734792..735625) Persephonella marina EX-H1 7676159 YP_002730570.1 CDS PERMA_0783 NC_012440.1 735625 736434 R identified by Glimmer3; hypothetical protein complement(735625..736434) Persephonella marina EX-H1 7675941 YP_002730571.1 CDS leuS NC_012440.1 736541 738367 D identified by match to protein family HMM PF00133; match to protein family HMM PF09334; match to protein family HMM TIGR00396; leucyl-tRNA synthetase 736541..738367 Persephonella marina EX-H1 7675574 YP_002730572.1 CDS PERMA_0785 NC_012440.1 738437 739561 D identified by match to protein family HMM PF01637; ATPase 738437..739561 Persephonella marina EX-H1 7675783 YP_002730573.1 CDS PERMA_0786 NC_012440.1 739963 740826 D identified by match to protein family HMM PF08264; leucyl-tRNA synthetase subunit beta (Leucine--tRNA ligasesubunit beta) (LeuRS) 739963..740826 Persephonella marina EX-H1 7675397 YP_002730574.1 CDS PERMA_0788 NC_012440.1 740837 741271 D identified by match to protein family HMM PF00582; stress response protein 740837..741271 Persephonella marina EX-H1 7676056 YP_002730575.1 CDS PERMA_0787 NC_012440.1 741257 741826 R DedA family protein complement(741257..741826) Persephonella marina EX-H1 7674771 YP_002730576.1 CDS PERMA_0789 NC_012440.1 741857 742363 R identified by match to protein family HMM PF02517; caax amino protease family protein complement(741857..742363) Persephonella marina EX-H1 7674206 YP_002730577.1 CDS gidA NC_012440.1 742363 744234 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(742363..744234) Persephonella marina EX-H1 7675032 YP_002730578.1 CDS PERMA_0792 NC_012440.1 744368 745639 D hypothetical protein 744368..745639 Persephonella marina EX-H1 7675765 YP_002730579.1 CDS PERMA_0791 NC_012440.1 745636 746070 R identified by match to protein family HMM PF04417; hypothetical protein complement(745636..746070) Persephonella marina EX-H1 7674207 YP_002730580.1 CDS PERMA_0793 NC_012440.1 746057 747904 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator complement(746057..747904) Persephonella marina EX-H1 7675081 YP_002730581.1 CDS PERMA_0794 NC_012440.1 747968 748516 D identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 747968..748516 Persephonella marina EX-H1 7676082 YP_002730582.1 CDS thiC NC_012440.1 748621 749988 D identified by match to protein family HMM PF01964; match to protein family HMM TIGR00190; thiamine biosynthesis protein ThiC 748621..749988 Persephonella marina EX-H1 7676157 YP_002730583.1 CDS PERMA_0796 NC_012440.1 750028 750999 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; nitrogen regulation protein NtrB 750028..750999 Persephonella marina EX-H1 7675577 YP_002730584.1 CDS PERMA_0797 NC_012440.1 751002 752381 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; nitrogen regulation protein 751002..752381 Persephonella marina EX-H1 7674667 YP_002730585.1 CDS PERMA_0798 NC_012440.1 752419 753717 D identified by match to protein family HMM PF00515; match to protein family HMM PF05036; match to protein family HMM PF07719; TPR Domain containing protein 752419..753717 Persephonella marina EX-H1 7675110 YP_002730586.1 CDS PERMA_0799 NC_012440.1 753725 754687 D identified by match to protein family HMM PF00535; UDP-phosphate 4-deoxy-4-formamido-L-arabinose transferase 753725..754687 Persephonella marina EX-H1 7675254 YP_002730587.1 CDS PERMA_0800 NC_012440.1 754689 755552 D hypothetical protein 754689..755552 Persephonella marina EX-H1 7674628 YP_002730588.1 CDS PERMA_0801 NC_012440.1 755553 756518 R WD40 repeat-containing protein complement(755553..756518) Persephonella marina EX-H1 7675284 YP_002730589.1 CDS PERMA_0802 NC_012440.1 756629 757183 D identified by match to protein family HMM PF00440; transcriptional regulator 756629..757183 Persephonella marina EX-H1 7674579 YP_002730590.1 CDS PERMA_0803 NC_012440.1 757180 758463 D identified by match to protein family HMM PF02321; outer membrane efflux protein 757180..758463 Persephonella marina EX-H1 7674509 YP_002730591.1 CDS PERMA_0804 NC_012440.1 758453 759580 D identified by match to protein family HMM PF00529; multidrug-efflux transporter, MFS family 758453..759580 Persephonella marina EX-H1 7676090 YP_002730592.1 CDS PERMA_0805 NC_012440.1 759588 761156 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; major facilitator family transporter 759588..761156 Persephonella marina EX-H1 7675149 YP_002730593.1 CDS PERMA_0806 NC_012440.1 761143 762300 D identified by match to protein family HMM PF00529; efflux system, membrane fusion protein 761143..762300 Persephonella marina EX-H1 7675989 YP_002730594.1 CDS PERMA_0807 NC_012440.1 762302 763390 D identified by match to protein family HMM PF00924; MscS Mechanosensitive ion channel 762302..763390 Persephonella marina EX-H1 7674746 YP_002730595.1 CDS PERMA_0808 NC_012440.1 763393 765006 D identified by match to protein family HMM PF00005; multidrug ABC transporter 763393..765006 Persephonella marina EX-H1 7674314 YP_002730596.1 CDS PERMA_0809 NC_012440.1 765015 765437 D identified by match to protein family HMM PF01451; protein ArsC (Arsenate reductase) (Arsenical pumpmodifier) (Low molecular weight protein-tyrosine-phosphatase) 765015..765437 Persephonella marina EX-H1 7675229 YP_002730597.1 CDS PERMA_0810 NC_012440.1 765447 766556 D identified by match to protein family HMM PF01061; multidrug ABC transporter 765447..766556 Persephonella marina EX-H1 7675399 YP_002730598.1 CDS PERMA_0811 NC_012440.1 766553 767629 D identified by match to protein family HMM PF01061; multidrug ABC transporter permease 766553..767629 Persephonella marina EX-H1 7675406 YP_002730599.1 CDS PERMA_0812 NC_012440.1 767711 768568 D identified by match to protein family HMM PF01656; chromosome partitioning protein, ATPase ParA 767711..768568 Persephonella marina EX-H1 7674248 YP_002730600.1 CDS PERMA_0813 NC_012440.1 768572 769525 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family protein 768572..769525 Persephonella marina EX-H1 7675875 YP_002730601.1 CDS gspG NC_012440.1 769560 769967 D identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532; general secretion pathway protein G 769560..769967 Persephonella marina EX-H1 7676045 YP_002730602.1 CDS PERMA_0815 NC_012440.1 769942 770274 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; general secretion pathway protein G 769942..770274 Persephonella marina EX-H1 7674850 YP_002730603.1 CDS PERMA_0816 NC_012440.1 770264 770791 D identified by match to protein family HMM TIGR02532; prepilin-type N- cleavage/methylation domain protein 770264..770791 Persephonella marina EX-H1 7674687 YP_002730604.1 CDS PERMA_0817 NC_012440.1 770793 771683 D hypothetical protein 770793..771683 Persephonella marina EX-H1 7675554 YP_002730605.1 CDS PERMA_0818 NC_012440.1 771693 772817 D identified by Glimmer3; hypothetical protein 771693..772817 Persephonella marina EX-H1 7674324 YP_002730606.1 CDS PERMA_0819 NC_012440.1 772814 773296 D identified by Glimmer3; hypothetical protein 772814..773296 Persephonella marina EX-H1 7675236 YP_002730607.1 CDS PERMA_0820 NC_012440.1 773365 773946 D identified by Glimmer3; hypothetical protein 773365..773946 Persephonella marina EX-H1 7674603 YP_002730608.1 CDS PERMA_0821 NC_012440.1 773957 775720 D identified by match to protein family HMM PF00082; serine protease 773957..775720 Persephonella marina EX-H1 7675096 YP_002730609.1 CDS PERMA_0822 NC_012440.1 775713 776573 D hypothetical protein 775713..776573 Persephonella marina EX-H1 7675461 YP_002730610.1 CDS gspD NC_012440.1 776560 778569 D identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517; general secretion pathway protein D 776560..778569 Persephonella marina EX-H1 7674659 YP_002730611.1 CDS PERMA_0824 NC_012440.1 778572 780002 D identified by match to protein family HMM PF00437; general secretion pathway protein E (Type II traffic warden ATPase)(Cholera toxin secretion protein EpsE) 778572..780002 Persephonella marina EX-H1 7675304 YP_002730612.1 CDS PERMA_0826 NC_012440.1 780005 781207 D identified by match to protein family HMM PF00482; fimbrial assembly protein PilC2 780005..781207 Persephonella marina EX-H1 7674832 YP_002730613.1 CDS PERMA_0825 NC_012440.1 781200 781826 R identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; S-adenosylmethionine-dependent methyltransferase complement(781200..781826) Persephonella marina EX-H1 7675006 YP_002730614.1 CDS PERMA_0827 NC_012440.1 781826 782017 R identified by match to protein family HMM PF00301; rubredoxin complement(781826..782017) Persephonella marina EX-H1 7676187 YP_002730615.1 CDS mtnC NC_012440.1 782107 782790 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; match to protein family HMM TIGR01691; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 782107..782790 Persephonella marina EX-H1 7675776 YP_002730616.1 CDS PERMA_0828 NC_012440.1 782777 783331 R ABC transporter permease complement(782777..783331) Persephonella marina EX-H1 7674394 YP_002730617.1 CDS PERMA_0830 NC_012440.1 783321 783962 R identified by match to protein family HMM PF01891; CbiM complement(783321..783962) Persephonella marina EX-H1 7675562 YP_002730618.1 CDS PERMA_0831 NC_012440.1 783972 784958 R hypothetical protein complement(783972..784958) Persephonella marina EX-H1 7675336 YP_002730619.1 CDS PERMA_0832 NC_012440.1 784942 785370 R hypothetical protein complement(784942..785370) Persephonella marina EX-H1 7674983 YP_002730620.1 CDS PERMA_0833 NC_012440.1 785372 786058 R hypothetical protein complement(785372..786058) Persephonella marina EX-H1 7676097 YP_002730621.1 CDS PERMA_0834 NC_012440.1 786153 786869 D identified by match to protein family HMM PF09339; transcriptional regulator, IclR family 786153..786869 Persephonella marina EX-H1 7675620 YP_002730622.1 CDS PERMA_0835 NC_012440.1 787125 788303 D identified by match to protein family HMM PF07396; Phosphate-selective porin O and P superfamily protein 787125..788303 Persephonella marina EX-H1 7676188 YP_002730623.1 CDS acsA_2 NC_012440.1 788315 790216 D identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188; acetate--CoA ligase 788315..790216 Persephonella marina EX-H1 7675942 YP_002730624.1 CDS PERMA_0837 NC_012440.1 790228 790539 D identified by match to protein family HMM PF04341; PaaW 790228..790539 Persephonella marina EX-H1 7674815 YP_002730625.1 CDS PERMA_0838 NC_012440.1 790544 792142 D identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium/solute symporter family protein 790544..792142 Persephonella marina EX-H1 7675654 YP_002730626.1 CDS PERMA_0839 NC_012440.1 792174 793979 D identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445; nucleotidyltransferase family 792174..793979 Persephonella marina EX-H1 7674364 YP_002730627.1 CDS PERMA_0840 NC_012440.1 793981 794601 D identified by match to protein family HMM PF00929; DNA polymerase III subunit epsilon 793981..794601 Persephonella marina EX-H1 7675346 YP_002730628.1 CDS PERMA_0841 NC_012440.1 794674 795789 D identified by match to protein family HMM PF01637; ATPase 794674..795789 Persephonella marina EX-H1 7675010 YP_002730629.1 CDS PERMA_0842 NC_012440.1 795877 796428 D hypothetical protein 795877..796428 Persephonella marina EX-H1 7675602 YP_002730630.1 CDS PERMA_0843 NC_012440.1 796418 796633 D identified by Glimmer3; hypothetical protein 796418..796633 Persephonella marina EX-H1 7674877 YP_002730631.1 CDS PERMA_0844 NC_012440.1 796667 796888 D identified by Glimmer3; hypothetical protein 796667..796888 Persephonella marina EX-H1 7675697 YP_002730632.1 CDS PERMA_0845 NC_012440.1 797142 799271 D identified by match to protein family HMM PF07503; HypF finger family 797142..799271 Persephonella marina EX-H1 7675553 YP_002730633.1 CDS PERMA_0847 NC_012440.1 799268 800368 D identified by match to protein family HMM PF01139; gp160 799268..800368 Persephonella marina EX-H1 7675118 YP_002730634.1 CDS PERMA_0846 NC_012440.1 800365 801483 R identified by match to protein family HMM PF00924; mechanosensitive ion channel MscS complement(800365..801483) Persephonella marina EX-H1 7675881 YP_002730635.1 CDS PERMA_0848 NC_012440.1 801522 802463 R lipoprotein complement(801522..802463) Persephonella marina EX-H1 7675078 YP_002730636.1 CDS PERMA_0849 NC_012440.1 802623 803018 D lipoprotein 802623..803018 Persephonella marina EX-H1 7674418 YP_002730637.1 CDS PERMA_0850 NC_012440.1 803041 803466 D identified by match to protein family HMM PF03965; transcriptional repressor, CopY family 803041..803466 Persephonella marina EX-H1 7676006 YP_002730638.1 CDS PERMA_0851 NC_012440.1 803453 804259 D identified by match to protein family HMM PF01435; match to protein family HMM PF05569; peptidase, M48 family 803453..804259 Persephonella marina EX-H1 7675331 YP_002730639.1 CDS PERMA_0852 NC_012440.1 804323 805504 D identified by match to protein family HMM PF02321; outer membrane efflux protein 804323..805504 Persephonella marina EX-H1 7675159 YP_002730640.1 CDS PERMA_0853 NC_012440.1 805501 806691 D identified by match to protein family HMM TIGR01730; chemiosmotic efflux system B protein B 805501..806691 Persephonella marina EX-H1 7675605 YP_002730641.1 CDS PERMA_0854 NC_012440.1 806704 809841 D identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; cation efflux system protein CusA 806704..809841 Persephonella marina EX-H1 7675305 YP_002730642.1 CDS PERMA_0855 NC_012440.1 809866 810075 D identified by Glimmer3; hypothetical protein 809866..810075 Persephonella marina EX-H1 7675471 YP_002730643.1 CDS PERMA_0856 NC_012440.1 810205 811227 R identified by match to protein family HMM PF04055; [pyruvate formate-lyase]-activating enzyme complement(810205..811227) Persephonella marina EX-H1 7676145 YP_002730644.1 CDS PERMA_0857 NC_012440.1 811294 814425 R identified by match to protein family HMM PF00801; PKD domain protein complement(811294..814425) Persephonella marina EX-H1 7675521 YP_002730645.1 CDS PERMA_0858 NC_012440.1 814646 816331 D identified by match to protein family HMM PF00289; match to protein family HMM PF02786; match to protein family HMM PF02787; carbamoyl-phosphate synthase large chain, N- section (Carbamoyl-phosphate synthetase ammonia chain) 814646..816331 Persephonella marina EX-H1 7675051 YP_002730646.1 CDS PERMA_0859 NC_012440.1 816395 818938 D identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM PF03477; match to protein family HMM TIGR02504; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 816395..818938 Persephonella marina EX-H1 7674306 YP_002730647.1 CDS PERMA_0861 NC_012440.1 818935 819480 D identified by match to protein family HMM PF02572; Cob(I)yrinic acid a,c-diamide adenosyltransferase (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase) 818935..819480 Persephonella marina EX-H1 7675212 YP_002730648.1 CDS PERMA_0860 NC_012440.1 819477 820067 R identified by match to protein family HMM PF00440; YsiA complement(819477..820067) Persephonella marina EX-H1 7676089 YP_002730649.1 CDS PERMA_0862 NC_012440.1 820167 820883 R identified by match to protein family HMM PF09699; match to protein family HMM TIGR01905; doubled cxxch motif (paired_cxxch_1) family complement(820167..820883) Persephonella marina EX-H1 7676020 YP_002730650.1 CDS PERMA_0863 NC_012440.1 821016 821597 D identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; aromatic acid decarboxylase 821016..821597 Persephonella marina EX-H1 7674480 YP_002730651.1 CDS PERMA_0865 NC_012440.1 821584 822462 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family protein 821584..822462 Persephonella marina EX-H1 7675313 YP_002730652.1 CDS hisF NC_012440.1 822457 823215 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(822457..823215) Persephonella marina EX-H1 7676194 YP_002730653.1 CDS PERMA_0866 NC_012440.1 823205 823591 R identified by match to protein family HMM PF01751; toprim domain protein complement(823205..823591) Persephonella marina EX-H1 7675055 YP_002730654.1 CDS PERMA_0867 NC_012440.1 823591 824073 R response regulator receiver protein complement(823591..824073) Persephonella marina EX-H1 7675705 YP_002730655.1 CDS PERMA_0868 NC_012440.1 824085 824939 R identified by match to protein family HMM PF02642; hypothetical protein complement(824085..824939) Persephonella marina EX-H1 7674819 YP_002730656.1 CDS PERMA_0869 NC_012440.1 824970 825788 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; RNA pseudouridine synthase family protein complement(824970..825788) Persephonella marina EX-H1 7674504 YP_002730657.1 CDS PERMA_0870 NC_012440.1 825785 826552 R hydrolase, alpha/beta fold family complement(825785..826552) Persephonella marina EX-H1 7674959 YP_002730658.1 CDS PERMA_0871 NC_012440.1 826606 827742 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; match to protein family HMM TIGR03700; menaquinone biosynthesis protein, family 826606..827742 Persephonella marina EX-H1 7674403 YP_002730659.1 CDS PERMA_0873 NC_012440.1 827744 827968 D identified by Glimmer3; hypothetical protein 827744..827968 Persephonella marina EX-H1 7675827 YP_002730660.1 CDS PERMA_0872 NC_012440.1 827955 828845 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux protein complement(827955..828845) Persephonella marina EX-H1 7674196 YP_002730661.1 CDS PERMA_0875 NC_012440.1 828920 829879 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase, RluA family 828920..829879 Persephonella marina EX-H1 7676043 YP_002730662.1 CDS recN NC_012440.1 829872 831503 R identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN complement(829872..831503) Persephonella marina EX-H1 7674525 YP_002730663.1 CDS PERMA_0876 NC_012440.1 831649 831846 D identified by Glimmer3; hypothetical protein 831649..831846 Persephonella marina EX-H1 7674775 YP_002730664.1 CDS PERMA_0877 NC_012440.1 831907 833091 D identified by match to protein family HMM PF02321; outer membrane efflux protein 831907..833091 Persephonella marina EX-H1 7675409 YP_002730665.1 CDS PERMA_0878 NC_012440.1 833088 834179 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; cation efflux system 833088..834179 Persephonella marina EX-H1 7676169 YP_002730666.1 CDS PERMA_0879 NC_012440.1 834191 837262 D identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; cation efflux system protein CzcA 834191..837262 Persephonella marina EX-H1 7675867 YP_002730667.1 CDS PERMA_0880 NC_012440.1 837330 837818 D hypothetical protein 837330..837818 Persephonella marina EX-H1 7675312 YP_002730668.1 CDS PERMA_0881 NC_012440.1 837818 838291 D identified by match to protein family HMM PF01988; integral membrane protein 837818..838291 Persephonella marina EX-H1 7674217 YP_002730669.1 CDS PERMA_0882 NC_012440.1 838356 838592 D identified by Glimmer3; hypothetical protein 838356..838592 Persephonella marina EX-H1 7674768 YP_002730670.1 CDS PERMA_0883 NC_012440.1 838601 839641 D hypothetical protein 838601..839641 Persephonella marina EX-H1 7675062 YP_002730671.1 CDS PERMA_0884 NC_012440.1 839641 840996 D identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase 839641..840996 Persephonella marina EX-H1 7675774 YP_002730672.1 CDS PERMA_0885 NC_012440.1 841004 843088 D identified by match to protein family HMM PF01551; match to protein family HMM PF03253; urea transporter 841004..843088 Persephonella marina EX-H1 7675850 YP_002730673.1 CDS PERMA_0886 NC_012440.1 843098 843952 D identified by Glimmer3; hypothetical protein 843098..843952 Persephonella marina EX-H1 7674593 YP_002730674.1 CDS PERMA_0887 NC_012440.1 843962 844573 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 843962..844573 Persephonella marina EX-H1 7674219 YP_002730675.1 CDS PERMA_0889 NC_012440.1 844570 844914 D identified by match to protein family HMM PF06094; hypothetical protein 844570..844914 Persephonella marina EX-H1 7674748 YP_002730676.1 CDS PERMA_0888 NC_012440.1 844911 847382 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; periplasmic nitrate reductase complement(844911..847382) Persephonella marina EX-H1 7675872 YP_002730677.1 CDS PERMA_0890 NC_012440.1 847384 848703 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(847384..848703) Persephonella marina EX-H1 7675755 YP_002730678.1 CDS PERMA_0891 NC_012440.1 848693 850609 R identified by match to protein family HMM PF01077; match to protein family HMM PF03460; ferredoxin--nitrite reductase complement(848693..850609) Persephonella marina EX-H1 7675543 YP_002730679.1 CDS PERMA_0892 NC_012440.1 850790 851482 D identified by match to protein family HMM PF00117; glutamine amidotransferase class-I 850790..851482 Persephonella marina EX-H1 7674712 YP_002730680.1 CDS PERMA_0893 NC_012440.1 851485 852039 D identified by match to protein family HMM TIGR01470; siroheme synthase 851485..852039 Persephonella marina EX-H1 7674348 YP_002730681.1 CDS PERMA_0894 NC_012440.1 852040 852585 R identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein complement(852040..852585) Persephonella marina EX-H1 7675047 YP_002730682.1 CDS PERMA_0895 NC_012440.1 852589 853053 R identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein complement(852589..853053) Persephonella marina EX-H1 7674872 YP_002730683.1 CDS PERMA_0896 NC_012440.1 853110 853676 R identified by match to protein family HMM PF00596; L-fuculose phosphate aldolase complement(853110..853676) Persephonella marina EX-H1 7675853 YP_002730684.1 CDS PERMA_0898 NC_012440.1 853815 854318 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thiol peroxidase (Scavengase P20) 853815..854318 Persephonella marina EX-H1 7675890 YP_002730685.1 CDS PERMA_0897 NC_012440.1 854282 855553 R identified by Glimmer3; hypothetical protein complement(854282..855553) Persephonella marina EX-H1 7675511 YP_002730686.1 CDS PERMA_0899 NC_012440.1 855631 856272 R identified by Glimmer3; hypothetical protein complement(855631..856272) Persephonella marina EX-H1 7674854 YP_002730687.1 CDS PERMA_0900 NC_012440.1 856334 857155 D identified by match to protein family HMM PF01739; chemotaxis protein methyltransferase 2 856334..857155 Persephonella marina EX-H1 7674184 YP_002730688.1 CDS bioA NC_012440.1 857148 858509 D identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate transaminase 857148..858509 Persephonella marina EX-H1 7675271 YP_002730689.1 CDS PERMA_0902 NC_012440.1 858510 858947 R hypothetical protein complement(858510..858947) Persephonella marina EX-H1 7676152 YP_002730690.1 CDS PERMA_0903 NC_012440.1 859130 863854 D identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; DNA polymerase III subunit alpha 859130..863854 Persephonella marina EX-H1 7675174 YP_002730691.1 CDS folE NC_012440.1 863859 864416 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(863859..864416) Persephonella marina EX-H1 7675287 YP_002730692.1 CDS PERMA_0905 NC_012440.1 864421 864843 R identified by match to protein family HMM PF02629; CoA-binding domain protein complement(864421..864843) Persephonella marina EX-H1 7675183 YP_002730693.1 CDS lipA NC_012440.1 864937 865779 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 864937..865779 Persephonella marina EX-H1 7675879 YP_002730694.1 CDS PERMA_0906 NC_012440.1 865772 866134 R identified by Glimmer3; hypothetical protein complement(865772..866134) Persephonella marina EX-H1 7674533 YP_002730695.1 CDS PERMA_0908 NC_012440.1 866279 867490 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; dead/deah box helicase domain protein 866279..867490 Persephonella marina EX-H1 7675896 YP_002730696.1 CDS dnaA NC_012440.1 867511 868824 R identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA complement(867511..868824) Persephonella marina EX-H1 7675404 YP_002730697.1 CDS PERMA_0910 NC_012440.1 869005 869292 R hypothetical protein complement(869005..869292) Persephonella marina EX-H1 7675790 YP_002730698.1 CDS PERMA_0911 NC_012440.1 869320 869976 R identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875; transaldolase complement(869320..869976) Persephonella marina EX-H1 7675801 YP_002730699.1 CDS PERMA_0912 NC_012440.1 869977 871308 R identified by match to protein family HMM PF01551; peptidase, M23/M37 family complement(869977..871308) Persephonella marina EX-H1 7674265 YP_002730700.1 CDS leuA NC_012440.1 871320 872864 R identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00973; 2-isopropylmalate synthase complement(871320..872864) Persephonella marina EX-H1 7674428 YP_002730701.1 CDS PERMA_0914 NC_012440.1 872966 874339 R identified by match to protein family HMM PF00374; hydrogenase large subunit complement(872966..874339) Persephonella marina EX-H1 7675520 YP_002730702.1 CDS hybA NC_012440.1 874340 875260 R identified by match to protein family HMM PF01058; hydrogenase-2, small subunit complement(874340..875260) Persephonella marina EX-H1 7675950 YP_002730703.1 CDS PERMA_0916 NC_012440.1 875262 875861 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(875262..875861) Persephonella marina EX-H1 7674371 YP_002730704.1 CDS PERMA_0917 NC_012440.1 875907 876356 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(875907..876356) Persephonella marina EX-H1 7674351 YP_002730705.1 CDS hypB NC_012440.1 876311 877033 R identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase accessory protein HypB complement(876311..877033) Persephonella marina EX-H1 7675824 YP_002730706.1 CDS PERMA_0919 NC_012440.1 877084 877500 R identified by match to protein family HMM PF01402; match to protein family HMM PF08753; repressor complement(877084..877500) Persephonella marina EX-H1 7674242 YP_002730707.1 CDS PERMA_0920 NC_012440.1 877509 878279 R identified by match to protein family HMM PF00005; cobalt import ATP-binding protein CbiO 1 complement(877509..878279) Persephonella marina EX-H1 7676104 YP_002730708.1 CDS PERMA_0921 NC_012440.1 878266 879504 R identified by match to protein family HMM PF02754; oxido/reductase iron sulfur protein complement(878266..879504) Persephonella marina EX-H1 7676086 YP_002730709.1 CDS PERMA_0922 NC_012440.1 879795 879974 D identified by Glimmer3; hypothetical protein 879795..879974 Persephonella marina EX-H1 7674462 YP_002730710.1 CDS PERMA_0923 NC_012440.1 879975 881306 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 specific transcriptional regulator, Fis family complement(879975..881306) Persephonella marina EX-H1 7675794 YP_002730711.1 CDS PERMA_0924 NC_012440.1 881494 882177 R YheB complement(881494..882177) Persephonella marina EX-H1 7675175 YP_002730712.1 CDS typA NC_012440.1 882179 883987 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA/BipA complement(882179..883987) Persephonella marina EX-H1 7675295 YP_002730713.1 CDS PERMA_0926 NC_012440.1 884102 884455 D identified by Glimmer3; hypothetical protein 884102..884455 Persephonella marina EX-H1 7674429 YP_002730714.1 CDS uvrC NC_012440.1 884433 886175 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 884433..886175 Persephonella marina EX-H1 7674177 YP_002730715.1 CDS PERMA_0928 NC_012440.1 886231 887619 D identified by match to protein family HMM PF08447; match to protein family HMM TIGR00229; PAS fold family protein 886231..887619 Persephonella marina EX-H1 7675379 YP_002730716.1 CDS PERMA_0929 NC_012440.1 887629 888384 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01458; match to protein family HMM TIGR01460; HAD-superfamily subfamily IIA hydrolase 887629..888384 Persephonella marina EX-H1 7675048 YP_002730717.1 CDS PERMA_0931 NC_012440.1 888388 888597 D identified by Glimmer3; hypothetical protein 888388..888597 Persephonella marina EX-H1 7674831 YP_002730718.1 CDS PERMA_0930 NC_012440.1 888594 888941 R identified by Glimmer3; hypothetical protein complement(888594..888941) Persephonella marina EX-H1 7676154 YP_002730719.1 CDS mtnP NC_012440.1 889039 889881 D identified by match to protein family HMM PF00896; match to protein family HMM TIGR01694; methylthioadenosine phosphorylase 889039..889881 Persephonella marina EX-H1 7675160 YP_002730720.1 CDS PERMA_0932 NC_012440.1 889878 890873 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator complement(889878..890873) Persephonella marina EX-H1 7675893 YP_002730721.1 CDS prtC NC_012440.1 890951 892210 R identified by match to protein family HMM PF01136; collagenase complement(890951..892210) Persephonella marina EX-H1 7675171 YP_002730722.1 CDS trpC NC_012440.1 892326 893117 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 892326..893117 Persephonella marina EX-H1 7675702 YP_002730723.1 CDS PERMA_0935 NC_012440.1 893110 893847 R identified by match to protein family HMM PF00149; Bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetrical] (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphateasymmetrical hydrolase) (Diadenosine tetraphosphatase) complement(893110..893847) Persephonella marina EX-H1 7674183 YP_002730724.1 CDS PERMA_0937 NC_012440.1 893832 896579 R identified by match to protein family HMM PF00801; PKD domain protein complement(893832..896579) Persephonella marina EX-H1 7674259 YP_002730725.1 CDS rsgA NC_012440.1 896638 897501 D identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; ribosome small subunit-dependent GTPase A 896638..897501 Persephonella marina EX-H1 7676044 YP_002730726.1 CDS PERMA_0938 NC_012440.1 897490 898350 R identified by match to protein family HMM PF01297; periplasmic solute binding protein family complement(897490..898350) Persephonella marina EX-H1 7674564 YP_002730727.1 CDS pncB NC_012440.1 898347 899699 R identified by match to protein family HMM PF01729; match to protein family HMM PF04095; match to protein family HMM TIGR01513; nicotinate phosphoribosyltransferase complement(898347..899699) Persephonella marina EX-H1 7674598 YP_002730728.1 CDS murC NC_012440.1 899696 901075 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01082; UDP-N-acetylmuramate--alanine ligase complement(899696..901075) Persephonella marina EX-H1 7676024 YP_002730729.1 CDS PERMA_0942 NC_012440.1 901147 902052 D BAX protein 901147..902052 Persephonella marina EX-H1 7674500 YP_002730730.1 CDS PERMA_0944 NC_012440.1 902150 903019 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 902150..903019 Persephonella marina EX-H1 7674258 YP_002730731.1 CDS PERMA_0943 NC_012440.1 903012 903626 R identified by match to protein family HMM PF03458; membrane protein complement(903012..903626) Persephonella marina EX-H1 7675571 YP_002730732.1 CDS sfsA NC_012440.1 903629 904318 R identified by match to protein family HMM PF03749; match to protein family HMM TIGR00230; sugar fermentation stimulation protein complement(903629..904318) Persephonella marina EX-H1 7675698 YP_002730733.1 CDS hemE NC_012440.1 904323 905363 R identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464; uroporphyrinogen decarboxylase complement(904323..905363) Persephonella marina EX-H1 7675459 YP_002730734.1 CDS PERMA_0947 NC_012440.1 905504 905827 D identified by match to protein family HMM PF00034; cytochrome c552 905504..905827 Persephonella marina EX-H1 7675861 YP_002730735.1 CDS PERMA_0949 NC_012440.1 905858 906244 D cytochrome c-551 (cytochrome c551) (cytochrome C8) 905858..906244 Persephonella marina EX-H1 7674800 YP_002730736.1 CDS PERMA_0948 NC_012440.1 906238 906474 R identified by Glimmer3; hypothetical protein complement(906238..906474) Persephonella marina EX-H1 7675400 YP_002730737.1 CDS PERMA_0950 NC_012440.1 906532 906954 D identified by Glimmer3; hypothetical protein 906532..906954 Persephonella marina EX-H1 7674539 YP_002730738.1 CDS PERMA_0951 NC_012440.1 906958 908118 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; periplasmic sensor signal transduction histidine kinase complement(906958..908118) Persephonella marina EX-H1 7676027 YP_002730739.1 CDS PERMA_0952 NC_012440.1 908115 908771 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional activator protein IrlR complement(908115..908771) Persephonella marina EX-H1 7675816 YP_002730740.1 CDS PERMA_0953 NC_012440.1 908812 909090 R hypothetical protein complement(908812..909090) Persephonella marina EX-H1 7674715 YP_002730741.1 CDS PERMA_0954 NC_012440.1 909126 911723 R identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; poly A polymerase complement(909126..911723) Persephonella marina EX-H1 7675206 YP_002730742.1 CDS PERMA_0956 NC_012440.1 911854 912246 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; 4-hydroxybenzoyl-CoA thioesterase complement(911854..912246) Persephonella marina EX-H1 7674933 YP_002730743.1 CDS PERMA_0957 NC_012440.1 912249 912671 R identified by Glimmer3; hypothetical protein complement(912249..912671) Persephonella marina EX-H1 7674441 YP_002730744.1 CDS PERMA_0958 NC_012440.1 912674 914053 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase complement(912674..914053) Persephonella marina EX-H1 7675082 YP_002730745.1 CDS metG NC_012440.1 914193 916067 D identified by match to protein family HMM PF01406; match to protein family HMM PF01588; match to protein family HMM PF09334; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399; methionyl-tRNA synthetase 914193..916067 Persephonella marina EX-H1 7675771 YP_002730746.1 CDS PERMA_0960 NC_012440.1 916077 916565 D identified by match to protein family HMM PF01257; NADH-quinone oxidoreductase subunit e (nadhdehydrogenase i subunit e) (ndh-1 subunit e) 916077..916565 Persephonella marina EX-H1 7675165 YP_002730747.1 CDS PERMA_0961 NC_012440.1 916565 917863 D identified by match to protein family HMM PF01512; NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit f) (ndh-1 subunit f) 916565..917863 Persephonella marina EX-H1 7674386 YP_002730748.1 CDS katG NC_012440.1 917864 920047 R identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI complement(917864..920047) Persephonella marina EX-H1 7675570 YP_002730749.1 CDS PERMA_0963 NC_012440.1 920124 921239 R identified by match to protein family HMM PF00155; aminotransferase complement(920124..921239) Persephonella marina EX-H1 7675388 YP_002730750.1 CDS thiO NC_012440.1 921243 922331 R identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352; glycine oxidase ThiO complement(921243..922331) Persephonella marina EX-H1 7676049 YP_002730751.1 CDS PERMA_0965 NC_012440.1 922340 923107 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(922340..923107) Persephonella marina EX-H1 7675764 YP_002730752.1 CDS PERMA_0966 NC_012440.1 923101 923826 R identified by match to protein family HMM PF00106; oxidoreductase, short-chain dehydrogenase/reductase family complement(923101..923826) Persephonella marina EX-H1 7676151 YP_002730753.1 CDS PERMA_0967 NC_012440.1 923889 924893 D identified by Glimmer3; hypothetical protein 923889..924893 Persephonella marina EX-H1 7675193 YP_002730754.1 CDS PERMA_0968 NC_012440.1 924890 926065 D identified by match to protein family HMM PF06347; match to protein family HMM PF08239; peptidoglycan-binding domain 1 protein 924890..926065 Persephonella marina EX-H1 7675266 YP_002730755.1 CDS PERMA_0969 NC_012440.1 926129 927376 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 926129..927376 Persephonella marina EX-H1 7674705 YP_002730756.1 CDS PERMA_0970 NC_012440.1 927380 929467 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; Ig family protein complement(927380..929467) Persephonella marina EX-H1 7674188 YP_002730757.1 CDS PERMA_0971 NC_012440.1 929467 930477 R identified by match to protein family HMM PF07719; hypothetical protein complement(929467..930477) Persephonella marina EX-H1 7676084 YP_002730758.1 CDS PERMA_0972 NC_012440.1 930474 932048 R identified by match to protein family HMM PF00263; pilus complement(930474..932048) Persephonella marina EX-H1 7674597 YP_002730759.1 CDS PERMA_0973 NC_012440.1 932027 932491 R identified by Glimmer3; hypothetical protein complement(932027..932491) Persephonella marina EX-H1 7675327 YP_002730760.1 CDS PERMA_0974 NC_012440.1 932493 932990 R identified by Glimmer3; hypothetical protein complement(932493..932990) Persephonella marina EX-H1 7675024 YP_002730761.1 CDS PERMA_0975 NC_012440.1 932991 934322 R identified by Glimmer3; hypothetical protein complement(932991..934322) Persephonella marina EX-H1 7676009 YP_002730762.1 CDS PERMA_0976 NC_012440.1 934446 935030 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N- methylation site 934446..935030 Persephonella marina EX-H1 7675576 YP_002730763.1 CDS PERMA_0977 NC_012440.1 935109 936785 D identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein TapB 935109..936785 Persephonella marina EX-H1 7675770 YP_002730764.1 CDS PERMA_0978 NC_012440.1 936787 938007 D identified by match to protein family HMM PF00482; type II secretion system protein 936787..938007 Persephonella marina EX-H1 7675846 YP_002730765.1 CDS PERMA_0980 NC_012440.1 938007 938762 D identified by match to protein family HMM PF01734; patatin 938007..938762 Persephonella marina EX-H1 7674391 YP_002730766.1 CDS PERMA_0979 NC_012440.1 938736 939647 R identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; chaperone protein DnaJ complement(938736..939647) Persephonella marina EX-H1 7675345 YP_002730767.1 CDS grpE NC_012440.1 939648 940214 R identified by match to protein family HMM PF01025; co-chaperone GrpE complement(939648..940214) Persephonella marina EX-H1 7675499 YP_002730768.1 CDS PERMA_0982 NC_012440.1 940279 940818 R identified by match to protein family HMM PF01936; RtsE complement(940279..940818) Persephonella marina EX-H1 7675592 YP_002730769.1 CDS PERMA_0983 NC_012440.1 940919 941119 D hypothetical protein 940919..941119 Persephonella marina EX-H1 7674522 YP_002730770.1 CDS PERMA_0984 NC_012440.1 941119 942270 D identified by match to protein family HMM PF00149; metallophosphoesterase 941119..942270 Persephonella marina EX-H1 7675003 YP_002730771.1 CDS PERMA_0985 NC_012440.1 942272 943279 D identified by match to protein family HMM PF00248; aldo/keto reductase 942272..943279 Persephonella marina EX-H1 7674793 YP_002730772.1 CDS PERMA_0986 NC_012440.1 943314 944405 D identified by match to protein family HMM PF01590; match to protein family HMM PF01966; metal dependent phosphohydrolase 943314..944405 Persephonella marina EX-H1 7675585 YP_002730773.1 CDS PERMA_0987 NC_012440.1 944395 945084 D identified by Glimmer3; hypothetical protein 944395..945084 Persephonella marina EX-H1 7675339 YP_002730774.1 CDS PERMA_0988 NC_012440.1 945087 947150 D identified by match to protein family HMM PF00211; match to protein family HMM PF05226; adenylate cyclase 945087..947150 Persephonella marina EX-H1 7676087 YP_002730775.1 CDS PERMA_0990 NC_012440.1 947131 947895 D identified by match to protein family HMM PF00753; metal dependent phosphohydrolase 947131..947895 Persephonella marina EX-H1 7674459 YP_002730776.1 CDS PERMA_0989 NC_012440.1 947883 950426 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator complement(947883..950426) Persephonella marina EX-H1 7675430 YP_002730777.1 CDS PERMA_0991 NC_012440.1 950631 952403 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug ABC transporter, ATP-binding protein 950631..952403 Persephonella marina EX-H1 7674542 YP_002730778.1 CDS PERMA_0992 NC_012440.1 952406 954496 D identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA 952406..954496 Persephonella marina EX-H1 7675433 YP_002730779.1 CDS PERMA_0993 NC_012440.1 954507 955670 R identified by Glimmer3; hypothetical protein complement(954507..955670) Persephonella marina EX-H1 7675358 YP_002730780.1 CDS PERMA_0994 NC_012440.1 955688 956788 R lipoprotein complement(955688..956788) Persephonella marina EX-H1 7675763 YP_002730781.1 CDS murI NC_012440.1 956799 957578 R identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase complement(956799..957578) Persephonella marina EX-H1 7675084 YP_002730782.1 CDS PERMA_0996 NC_012440.1 957580 957864 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; development gene iojAP superfamily protein complement(957580..957864) Persephonella marina EX-H1 7674212 YP_002730783.1 CDS PERMA_0997 NC_012440.1 957926 958828 R identified by match to protein family HMM PF07719; match to protein family HMM TIGR03302; similar to protein aq_1273; hypothetical protein complement(957926..958828) Persephonella marina EX-H1 7676066 YP_002730784.1 CDS PERMA_0998 NC_012440.1 958825 960228 R identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease G complement(958825..960228) Persephonella marina EX-H1 7675145 YP_002730785.1 CDS PERMA_0999 NC_012440.1 960316 961194 R ferredoxin-type protein, NapH/MauN family complement(960316..961194) Persephonella marina EX-H1 7676146 YP_002730786.1 CDS PERMA_1000 NC_012440.1 961297 962895 D identified by match to protein family HMM PF00400; match to protein family HMM PF08308; PEGA domain family protein 961297..962895 Persephonella marina EX-H1 7674600 YP_002730787.1 CDS purF NC_012440.1 962976 964355 D identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase 962976..964355 Persephonella marina EX-H1 7674223 YP_002730788.1 CDS PERMA_1003 NC_012440.1 964363 965442 D identified by match to protein family HMM PF00557; match to protein family HMM PF01321; Xaa-Pro dipeptidase (X-Pro dipeptidase) (Prolinedipeptidase) (Prolidase) (Imidodipeptidase) 964363..965442 Persephonella marina EX-H1 7674283 YP_002730789.1 CDS PERMA_1002 NC_012440.1 965428 965661 R hypothetical protein complement(965428..965661) Persephonella marina EX-H1 7674972 YP_002730790.1 CDS PERMA_1004 NC_012440.1 965774 967768 D identified by match to protein family HMM PF00563; eal/pas/ggdef domain protein 965774..967768 Persephonella marina EX-H1 7676172 YP_002730791.1 CDS PERMA_1005 NC_012440.1 967768 968856 D identified by match to protein family HMM PF07238; type IV pilus assembly protein PilZ 967768..968856 Persephonella marina EX-H1 7675205 YP_002730792.1 CDS PERMA_1007 NC_012440.1 968918 970204 D identified by Glimmer3; hypothetical protein 968918..970204 Persephonella marina EX-H1 7675541 YP_002730793.1 CDS PERMA_1006 NC_012440.1 970201 970800 R identified by match to protein family HMM PF00881; match to protein family HMM TIGR03605; NAD complement(970201..970800) Persephonella marina EX-H1 7675682 YP_002730794.1 CDS PERMA_1008 NC_012440.1 970787 971482 R identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methyltransferase UbiE complement(970787..971482) Persephonella marina EX-H1 7674264 YP_002730795.1 CDS PERMA_1009 NC_012440.1 971568 972398 D polysaccharide biosynthesis protein 971568..972398 Persephonella marina EX-H1 7675882 YP_002730796.1 CDS hypC NC_012440.1 972461 972706 D identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 972461..972706 Persephonella marina EX-H1 7674483 YP_002730797.1 CDS PERMA_1011 NC_012440.1 972734 972943 D identified by Glimmer3; hypothetical protein 972734..972943 Persephonella marina EX-H1 7674839 YP_002730798.1 CDS PERMA_1012 NC_012440.1 972936 973382 D identified by match to protein family HMM PF01850; PIN domain protein 972936..973382 Persephonella marina EX-H1 7675281 YP_002730799.1 CDS hypD NC_012440.1 973384 974496 D identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 973384..974496 Persephonella marina EX-H1 7675356 YP_002730800.1 CDS PERMA_1014 NC_012440.1 974554 977070 D identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01494; cation-transporting ATPase Pma1 974554..977070 Persephonella marina EX-H1 7675614 YP_002730801.1 CDS PERMA_1015 NC_012440.1 977070 978062 D identified by match to protein family HMM PF01699; sodium/calcium exchanger membrane region 977070..978062 Persephonella marina EX-H1 7676165 YP_002730802.1 CDS hypE NC_012440.1 978124 979122 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 978124..979122 Persephonella marina EX-H1 7675389 YP_002730803.1 CDS PERMA_1017 NC_012440.1 979116 979706 D identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; Ni/Fe hydrogenase, expression/formation protein 979116..979706 Persephonella marina EX-H1 7675116 YP_002730804.1 CDS PERMA_1019 NC_012440.1 979765 980472 D identified by match to protein family HMM PF02591; zinc ribbon domain family 979765..980472 Persephonella marina EX-H1 7674234 YP_002730805.1 CDS dapF NC_012440.1 980469 981338 R identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652; diaminopimelate epimerase complement(980469..981338) Persephonella marina EX-H1 7675177 YP_002730806.1 CDS PERMA_1021 NC_012440.1 981661 982080 D identified by match to protein family HMM PF01475; transcriptional regulator, Fur family 981661..982080 Persephonella marina EX-H1 7674406 YP_002730807.1 CDS lipB NC_012440.1 982077 982688 R identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214; lipoyl(octanoyl) transferase complement(982077..982688) Persephonella marina EX-H1 7675088 YP_002730808.1 CDS PERMA_1023 NC_012440.1 982715 983137 D Mov34/MPN/PAD-1 family protein 982715..983137 Persephonella marina EX-H1 7674293 YP_002730809.1 CDS PERMA_1022 NC_012440.1 983121 983633 R hypothetical protein complement(983121..983633) Persephonella marina EX-H1 7674727 YP_002730810.1 CDS PERMA_1024 NC_012440.1 983694 983900 R identified by match to protein family HMM PF00313; hypothetical protein complement(983694..983900) Persephonella marina EX-H1 7675557 YP_002730811.1 CDS rluB NC_012440.1 984135 984860 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B 984135..984860 Persephonella marina EX-H1 7675734 YP_002730812.1 CDS PERMA_1026 NC_012440.1 984907 985212 D identified by Glimmer3; hypothetical protein 984907..985212 Persephonella marina EX-H1 7674580 YP_002730813.1 CDS PERMA_1027 NC_012440.1 985437 986471 R hypothetical protein complement(985437..986471) Persephonella marina EX-H1 7674779 YP_002730814.1 CDS PERMA_1028 NC_012440.1 986531 987274 R identified by match to protein family HMM PF03412; peptidase C39 bacteriocin processing complement(986531..987274) Persephonella marina EX-H1 7674586 YP_002730815.1 CDS PERMA_1029 NC_012440.1 987277 987687 R identified by Glimmer3; hypothetical protein complement(987277..987687) Persephonella marina EX-H1 7675366 YP_002730816.1 CDS PERMA_1030 NC_012440.1 987690 988034 R identified by Glimmer3; hypothetical protein complement(987690..988034) Persephonella marina EX-H1 7674200 YP_002730817.1 CDS PERMA_1031 NC_012440.1 988094 991369 R identified by Glimmer3; hypothetical protein complement(988094..991369) Persephonella marina EX-H1 7676081 YP_002730818.1 CDS PERMA_1032 NC_012440.1 991471 991632 D identified by Glimmer3; hypothetical protein 991471..991632 Persephonella marina EX-H1 7674851 YP_002730819.1 CDS PERMA_1033 NC_012440.1 991665 992075 R identified by Glimmer3; hypothetical protein complement(991665..992075) Persephonella marina EX-H1 7674323 YP_002730820.1 CDS PERMA_1034 NC_012440.1 992133 995384 R identified by Glimmer3; hypothetical protein complement(992133..995384) Persephonella marina EX-H1 7675184 YP_002730821.1 CDS PERMA_1035 NC_012440.1 995652 996062 R identified by Glimmer3; hypothetical protein complement(995652..996062) Persephonella marina EX-H1 7675958 YP_002730822.1 CDS PERMA_1036 NC_012440.1 996065 996202 R identified by Glimmer3; hypothetical protein complement(996065..996202) Persephonella marina EX-H1 7675650 YP_002730823.1 CDS PERMA_1037 NC_012440.1 996293 999565 R identified by Glimmer3; hypothetical protein complement(996293..999565) Persephonella marina EX-H1 7674767 YP_002730824.1 CDS PERMA_1038 NC_012440.1 999768 1000829 R identified by match to protein family HMM PF00528; oligopeptide transport system permease protein AppC complement(999768..1000829) Persephonella marina EX-H1 7675028 YP_002730825.1 CDS PERMA_1039 NC_012440.1 1000831 1001817 R identified by match to protein family HMM PF00528; oligopeptide transport system permease protein AppB complement(1000831..1001817) Persephonella marina EX-H1 7675752 YP_002730826.1 CDS PERMA_1040 NC_012440.1 1001912 1002688 D citrate synthase 1001912..1002688 Persephonella marina EX-H1 7675708 YP_002730827.1 CDS PERMA_1042 NC_012440.1 1002698 1004713 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; nitrogen regulation protein NtrY 1002698..1004713 Persephonella marina EX-H1 7674587 YP_002730828.1 CDS mraY NC_012440.1 1004706 1005773 R identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1004706..1005773) Persephonella marina EX-H1 7675221 YP_002730829.1 CDS PERMA_1043 NC_012440.1 1005774 1006358 R tRNA (guanine-N(1)-)-methyltransferase (M1G-methyltransferase) (tRNA [GM37] methyltransferase) complement(1005774..1006358) Persephonella marina EX-H1 7675092 YP_002730830.1 CDS PERMA_1044 NC_012440.1 1006367 1006936 R identified by Glimmer3; hypothetical protein complement(1006367..1006936) Persephonella marina EX-H1 7674807 YP_002730831.1 CDS PERMA_1045 NC_012440.1 1006933 1007244 R identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase SecG subunit complement(1006933..1007244) Persephonella marina EX-H1 7674529 YP_002730832.1 CDS tpiA NC_012440.1 1007278 1008048 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1007278..1008048) Persephonella marina EX-H1 7674305 YP_002730833.1 CDS PERMA_1047 NC_012440.1 1008058 1008672 R identified by match to protein family HMM PF00300; match to protein family HMM TIGR01258; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) complement(1008058..1008672) Persephonella marina EX-H1 7674956 YP_002730834.1 CDS PERMA_1048 NC_012440.1 1008714 1009001 R conserved membrane protein YdzA complement(1008714..1009001) Persephonella marina EX-H1 7676110 YP_002730835.1 CDS PERMA_1049 NC_012440.1 1009013 1009753 R identified by match to protein family HMM PF05175; methyltransferase small complement(1009013..1009753) Persephonella marina EX-H1 7674899 YP_002730836.1 CDS atpC_1 NC_012440.1 1009755 1010165 R identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon complement(1009755..1010165) Persephonella marina EX-H1 7675249 YP_002730837.1 CDS PERMA_1051 NC_012440.1 1010247 1010903 D identified by match to protein family HMM PF01965; isoprenoid biosynthesis protein with amidotransferase-like domain 1010247..1010903 Persephonella marina EX-H1 7674331 YP_002730838.1 CDS PERMA_1052 NC_012440.1 1010890 1011012 D lipoprotein 1010890..1011012 Persephonella marina EX-H1 7675241 YP_002730839.1 CDS PERMA_1053 NC_012440.1 1011023 1011496 D deoxycytidine triphosphate deaminase 1011023..1011496 Persephonella marina EX-H1 7675527 YP_002730840.1 CDS PERMA_1054 NC_012440.1 1011560 1012885 D identified by match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447; homoserine dehydrogenase (HDH) 1011560..1012885 Persephonella marina EX-H1 7674860 YP_002730841.1 CDS PERMA_1055 NC_012440.1 1012889 1014337 D identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785; anion transporter 1012889..1014337 Persephonella marina EX-H1 7676057 YP_002730842.1 CDS PERMA_1056 NC_012440.1 1014347 1014781 D identified by match to protein family HMM PF00293; MutT/nudix family protein 1014347..1014781 Persephonella marina EX-H1 7675031 YP_002730843.1 CDS PERMA_1057 NC_012440.1 1014774 1015652 D identified by match to protein family HMM PF03279; lipid A biosynthesis acyltransferase 1014774..1015652 Persephonella marina EX-H1 7675209 YP_002730844.1 CDS hemL NC_012440.1 1015736 1017022 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1015736..1017022 Persephonella marina EX-H1 7674806 YP_002730845.1 CDS PERMA_1059 NC_012440.1 1017034 1017435 D identified by Glimmer3; hypothetical protein 1017034..1017435 Persephonella marina EX-H1 7675813 YP_002730846.1 CDS nrdR NC_012440.1 1017435 1017893 D identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 1017435..1017893 Persephonella marina EX-H1 7674726 YP_002730847.1 CDS PERMA_1061 NC_012440.1 1017908 1019098 R identified by Glimmer3; hypothetical protein complement(1017908..1019098) Persephonella marina EX-H1 7675030 YP_002730848.1 CDS PERMA_1062 NC_012440.1 1019243 1019692 D identified by match to protein family HMM PF09123; hypothetical protein 1019243..1019692 Persephonella marina EX-H1 7674714 YP_002730849.1 CDS PERMA_1063 NC_012440.1 1019694 1019942 R identified by Glimmer3; hypothetical protein complement(1019694..1019942) Persephonella marina EX-H1 7674503 YP_002730850.1 CDS PERMA_1064 NC_012440.1 1020084 1021154 D chromosome partitioning ATPase 1020084..1021154 Persephonella marina EX-H1 7674796 YP_002730851.1 CDS iscS NC_012440.1 1021172 1022407 D identified by match to protein family HMM PF00266; cysteine desulfurase IscS 1021172..1022407 Persephonella marina EX-H1 7675500 YP_002730852.1 CDS PERMA_1066 NC_012440.1 1022428 1022607 R hypothetical protein complement(1022428..1022607) Persephonella marina EX-H1 7675188 YP_002730853.1 CDS PERMA_1067 NC_012440.1 1022737 1023195 D identified by match to protein family HMM PF01592; nitrogen-fixing NifU domain protein 1022737..1023195 Persephonella marina EX-H1 7674398 YP_002730854.1 CDS PERMA_1068 NC_012440.1 1023185 1024243 D identified by match to protein family HMM PF02568; thiamine biosynthesis protein 1023185..1024243 Persephonella marina EX-H1 7675039 YP_002730855.1 CDS PERMA_1069 NC_012440.1 1024243 1024494 D identified by match to protein family HMM PF01206; protein C/C/C/C 1024243..1024494 Persephonella marina EX-H1 7676142 YP_002730856.1 CDS PERMA_1070 NC_012440.1 1024494 1024748 D hypothetical protein 1024494..1024748 Persephonella marina EX-H1 7674517 YP_002730857.1 CDS PERMA_1071 NC_012440.1 1024760 1025029 D identified by match to protein family HMM PF01106; hypothetical protein 1024760..1025029 Persephonella marina EX-H1 7674295 YP_002730858.1 CDS aroE NC_012440.1 1025031 1025876 D identified by match to protein family HMM PF01488; match to protein family HMM PF08501; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 1025031..1025876 Persephonella marina EX-H1 7675720 YP_002730859.1 CDS PERMA_1073 NC_012440.1 1025997 1026428 R identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein complement(1025997..1026428) Persephonella marina EX-H1 7674887 YP_002730860.1 CDS PERMA_1074 NC_012440.1 1026421 1027116 R identified by match to protein family HMM PF04493; endonuclease V (Deoxyinosine 3'endonuclease)(Deoxyribonuclease V) (DNase V) complement(1026421..1027116) Persephonella marina EX-H1 7674713 YP_002730861.1 CDS proB NC_012440.1 1027113 1028219 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(1027113..1028219) Persephonella marina EX-H1 7675673 YP_002730862.1 CDS PERMA_1076 NC_012440.1 1028221 1028979 R identified by match to protein family HMM PF08704; tRNA methyltransferase complex GCD14 subunit complement(1028221..1028979) Persephonella marina EX-H1 7674802 YP_002730863.1 CDS PERMA_1077 NC_012440.1 1028976 1029623 R hypothetical protein complement(1028976..1029623) Persephonella marina EX-H1 7675934 YP_002730864.1 CDS PERMA_1078 NC_012440.1 1029634 1030506 R identified by match to protein family HMM PF03446; 3-hydroxyisobutyrate dehydrogenase complement(1029634..1030506) Persephonella marina EX-H1 7675372 YP_002730865.1 CDS PERMA_1079 NC_012440.1 1030516 1032090 R identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; alpha-isopropylmalate/homocitrate synthase family transferase complement(1030516..1032090) Persephonella marina EX-H1 7675256 YP_002730866.1 CDS PERMA_1081 NC_012440.1 1032195 1032953 D identified by match to protein family HMM PF00561; hydrolase, alpha/beta fold family 1032195..1032953 Persephonella marina EX-H1 7674834 YP_002730867.1 CDS thiL NC_012440.1 1032948 1033901 R identified by match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase complement(1032948..1033901) Persephonella marina EX-H1 7675432 YP_002730868.1 CDS efp NC_012440.1 1033975 1034547 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1033975..1034547 Persephonella marina EX-H1 7674549 YP_002730869.1 CDS accB NC_012440.1 1034559 1035017 D identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1034559..1035017 Persephonella marina EX-H1 7675481 YP_002730870.1 CDS rfaD NC_012440.1 1035030 1035971 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197; ADP-glyceromanno-heptose 6-epimerase 1035030..1035971 Persephonella marina EX-H1 7674674 YP_002730871.1 CDS thrB NC_012440.1 1035972 1036874 D identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00191; homoserine kinase 1035972..1036874 Persephonella marina EX-H1 7674466 YP_002730872.1 CDS PERMA_1087 NC_012440.1 1036974 1037507 D identified by match to protein family HMM PF00258; flavodoxin 1036974..1037507 Persephonella marina EX-H1 7676191 YP_002730873.1 CDS PERMA_1086 NC_012440.1 1037502 1040345 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; transcription-repair-coupling factor (trcf) (ATP-dependent helicase mfd) complement(1037502..1040345) Persephonella marina EX-H1 7675719 YP_002730874.1 CDS PERMA_1088 NC_012440.1 1040350 1040850 R hypothetical protein complement(1040350..1040850) Persephonella marina EX-H1 7675523 YP_002730875.1 CDS mltD NC_012440.1 1040852 1042414 R identified by match to protein family HMM PF01464; match to protein family HMM PF01476; membrane-bound lytic murein transglycosylase D complement(1040852..1042414) Persephonella marina EX-H1 7675779 YP_002730876.1 CDS PERMA_1091 NC_012440.1 1042449 1043390 D identified by match to protein family HMM PF04055; MoaA/NifB/PqqE family protein 1042449..1043390 Persephonella marina EX-H1 7675103 YP_002730877.1 CDS cas_1 NC_012440.1 1043387 1044190 R identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877; CRISPR-associated protein Cas6 complement(1043387..1044190) Persephonella marina EX-H1 7675762 YP_002730878.1 CDS coaBC NC_012440.1 1044476 1045654 D identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1044476..1045654 Persephonella marina EX-H1 7675691 YP_002730879.1 CDS PERMA_1093 NC_012440.1 1045676 1046173 D identified by match to protein family HMM PF02080; TrkA domain protein 1045676..1046173 Persephonella marina EX-H1 7676199 YP_002730880.1 CDS PERMA_1094 NC_012440.1 1046163 1047353 D identified by match to protein family HMM PF00999; sodium/hydrogen exchanger 1046163..1047353 Persephonella marina EX-H1 7675248 YP_002730881.1 CDS PERMA_1095 NC_012440.1 1047355 1048284 D lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 1047355..1048284 Persephonella marina EX-H1 7675391 YP_002730882.1 CDS PERMA_1096 NC_012440.1 1048294 1049847 D identified by match to protein family HMM PF00520; match to protein family HMM PF02254; match to protein family HMM PF07885; potassium channel protein 1048294..1049847 Persephonella marina EX-H1 7675590 YP_002730883.1 CDS hemD NC_012440.1 1049844 1050545 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 1049844..1050545 Persephonella marina EX-H1 7674838 YP_002730884.1 CDS lpxC NC_012440.1 1050537 1051430 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(1050537..1051430) Persephonella marina EX-H1 7675269 YP_002730885.1 CDS PERMA_1099 NC_012440.1 1051585 1052817 D identified by Glimmer3; hypothetical protein 1051585..1052817 Persephonella marina EX-H1 7675260 YP_002730886.1 CDS PERMA_1101 NC_012440.1 1052818 1053696 D identified by match to protein family HMM PF01934; hypothetical protein 1052818..1053696 Persephonella marina EX-H1 7674906 YP_002730887.1 CDS PERMA_1100 NC_012440.1 1053670 1054488 R identified by match to protein family HMM PF00005; glutathione import ATP-binding protein GsiA complement(1053670..1054488) Persephonella marina EX-H1 7674494 YP_002730888.1 CDS PERMA_1102 NC_012440.1 1054509 1055405 R protein disulfide isomerase complement(1054509..1055405) Persephonella marina EX-H1 7675967 YP_002730889.1 CDS rpiB NC_012440.1 1055497 1055943 D identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B 1055497..1055943 Persephonella marina EX-H1 7675440 YP_002730890.1 CDS glyA NC_012440.1 1055957 1057219 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1055957..1057219 Persephonella marina EX-H1 7674236 YP_002730891.1 CDS PERMA_1105 NC_012440.1 1057244 1058086 D identified by match to protein family HMM PF01513; inorganic polyphosphate/ATP-NAD kinase 1057244..1058086 Persephonella marina EX-H1 7676072 YP_002730892.1 CDS ispF NC_012440.1 1058088 1058594 D identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1058088..1058594 Persephonella marina EX-H1 7675121 YP_002730893.1 CDS PERMA_1107 NC_012440.1 1058575 1058787 D hypothetical protein 1058575..1058787 Persephonella marina EX-H1 7675341 YP_002730894.1 CDS recG NC_012440.1 1058774 1061182 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1058774..1061182 Persephonella marina EX-H1 7675623 YP_002730895.1 CDS PERMA_1108 NC_012440.1 1061179 1061817 R identified by match to protein family HMM PF02535; GufA protein complement(1061179..1061817) Persephonella marina EX-H1 7675395 YP_002730896.1 CDS PERMA_1110 NC_012440.1 1062003 1063877 R identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; eal/ggdef/pas domain protein complement(1062003..1063877) Persephonella marina EX-H1 7676013 YP_002730897.1 CDS PERMA_1112 NC_012440.1 1064006 1066360 D identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; FOG: EAL domain protein 1064006..1066360 Persephonella marina EX-H1 7675996 YP_002730898.1 CDS PERMA_1111 NC_012440.1 1066352 1068226 R identified by match to protein family HMM PF01841; transglutaminase domain protein complement(1066352..1068226) Persephonella marina EX-H1 7675990 YP_002730899.1 CDS PERMA_1113 NC_012440.1 1068213 1068989 R identified by match to protein family HMM PF01882; hypothetical protein complement(1068213..1068989) Persephonella marina EX-H1 7675137 YP_002730900.1 CDS PERMA_1114 NC_012440.1 1069079 1070008 R identified by match to protein family HMM PF07726; match to protein family HMM PF07728; ATPase AAA complement(1069079..1070008) Persephonella marina EX-H1 7674846 YP_002730901.1 CDS panC NC_012440.1 1070017 1070886 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(1070017..1070886) Persephonella marina EX-H1 7674883 YP_002730902.1 CDS PERMA_1116 NC_012440.1 1070939 1071169 D identified by Glimmer3; hypothetical protein 1070939..1071169 Persephonella marina EX-H1 7675335 YP_002730903.1 CDS PERMA_1117 NC_012440.1 1071169 1071387 D hypothetical protein 1071169..1071387 Persephonella marina EX-H1 7675098 YP_002730904.1 CDS PERMA_1119 NC_012440.1 1071391 1073361 D identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; ggdef family protein 1071391..1073361 Persephonella marina EX-H1 7674290 YP_002730905.1 CDS hisC_1 NC_012440.1 1073345 1074448 R identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; histidinol-phosphate transaminase complement(1073345..1074448) Persephonella marina EX-H1 7674395 YP_002730906.1 CDS PERMA_1120 NC_012440.1 1074445 1075686 R identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein A complement(1074445..1075686) Persephonella marina EX-H1 7674235 YP_002730907.1 CDS PERMA_1121 NC_012440.1 1075691 1077283 R identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF02786; match to protein family HMM PF08443; carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) complement(1075691..1077283) Persephonella marina EX-H1 7675598 YP_002730908.1 CDS PERMA_1122 NC_012440.1 1077367 1078014 D identified by Glimmer3; hypothetical protein 1077367..1078014 Persephonella marina EX-H1 7676143 YP_002730909.1 CDS PERMA_1123 NC_012440.1 1078015 1078575 R identified by match to protein family HMM PF02581; thiamine-phosphate pyrophosphorylase (TMPpyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) complement(1078015..1078575) Persephonella marina EX-H1 7675385 YP_002730910.1 CDS PERMA_1124 NC_012440.1 1078735 1078932 D identified by match to protein family HMM PF03966; tetraacyldisaccharide 4'-kinase 1078735..1078932 Persephonella marina EX-H1 7675817 YP_002730911.1 CDS PERMA_1125 NC_012440.1 1078929 1080674 D identified by match to protein family HMM PF00496; transporter 1078929..1080674 Persephonella marina EX-H1 7674308 YP_002730912.1 CDS PERMA_1126 NC_012440.1 1080675 1081967 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; signal transduction response regulator complement(1080675..1081967) Persephonella marina EX-H1 7675444 YP_002730913.1 CDS PERMA_1127 NC_012440.1 1082051 1082515 R hypothetical protein complement(1082051..1082515) Persephonella marina EX-H1 7676127 YP_002730914.1 CDS PERMA_1128 NC_012440.1 1082484 1082885 R hypothetical protein complement(1082484..1082885) Persephonella marina EX-H1 7675179 YP_002730915.1 CDS PERMA_1129 NC_012440.1 1082897 1083427 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase AhpD core complement(1082897..1083427) Persephonella marina EX-H1 7675519 YP_002730916.1 CDS PERMA_1130 NC_012440.1 1083575 1084573 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 1083575..1084573 Persephonella marina EX-H1 7674567 YP_002730917.1 CDS PERMA_1131 NC_012440.1 1084584 1085429 D Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 1084584..1085429 Persephonella marina EX-H1 7674378 YP_002730918.1 CDS fumB NC_012440.1 1085440 1086003 D identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; fumarate hydratase, class I 1085440..1086003 Persephonella marina EX-H1 7675502 YP_002730919.1 CDS sucC NC_012440.1 1086036 1087202 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1086036..1087202 Persephonella marina EX-H1 7674993 YP_002730920.1 CDS sucD NC_012440.1 1087226 1088104 D identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinate-CoA ligase, alphsubunit A subfamily 1087226..1088104 Persephonella marina EX-H1 7674723 YP_002730921.1 CDS PERMA_1135 NC_012440.1 1088203 1090005 D identified by match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR03710; 2-oxoglutarate ferredoxin oxidoreductase alphsubunit A 1088203..1090005 Persephonella marina EX-H1 7674444 YP_002730922.1 CDS orB NC_012440.1 1090038 1090964 D identified by match to protein family HMM PF02775; match to protein family HMM TIGR02177; alpha oxoglutarate ferredoxin oxidoreductase, betsubunit A 1090038..1090964 Persephonella marina EX-H1 7675531 YP_002730923.1 CDS PERMA_1140 NC_012440.1 1093018 1093620 R hypothetical protein complement(1093018..1093620) Persephonella marina EX-H1 7674916 YP_002730924.1 CDS PERMA_1141 NC_012440.1 1093644 1094123 R hypothetical protein complement(1093644..1094123) Persephonella marina EX-H1 7674281 YP_002730925.1 CDS PERMA_1142 NC_012440.1 1094755 1095324 R hypothetical protein complement(1094755..1095324) Persephonella marina EX-H1 7674750 YP_002730926.1 CDS PERMA_1144 NC_012440.1 1096173 1097477 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; sodium-driven multidrug efflux pump protein complement(1096173..1097477) Persephonella marina EX-H1 7674947 YP_002730927.1 CDS PERMA_1145 NC_012440.1 1097617 1099743 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1097617..1099743 Persephonella marina EX-H1 7676107 YP_002730928.1 CDS PERMA_1146 NC_012440.1 1099744 1100151 R identified by match to protein family HMM PF00581; rhodanese domain protein complement(1099744..1100151) Persephonella marina EX-H1 7675033 YP_002730929.1 CDS PERMA_1147 NC_012440.1 1100226 1100858 R identified by match to protein family HMM PF00805; pentapeptide repeat protein complement(1100226..1100858) Persephonella marina EX-H1 7675518 YP_002730930.1 CDS PERMA_1148 NC_012440.1 1101124 1101546 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N- methylation motif domain protein 1101124..1101546 Persephonella marina EX-H1 7675699 YP_002730931.1 CDS PERMA_1149 NC_012440.1 1101763 1102182 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; fimbrillin 1101763..1102182 Persephonella marina EX-H1 7674843 YP_002730932.1 CDS PERMA_1150 NC_012440.1 1102185 1102694 R identified by Glimmer3; hypothetical protein complement(1102185..1102694) Persephonella marina EX-H1 7674701 YP_002730933.1 CDS PERMA_1151 NC_012440.1 1102704 1103654 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N- methylation motif domain protein complement(1102704..1103654) Persephonella marina EX-H1 7674421 YP_002730934.1 CDS PERMA_1152 NC_012440.1 1103654 1104136 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N- methylation motif domain protein complement(1103654..1104136) Persephonella marina EX-H1 7675910 YP_002730935.1 CDS PERMA_1153 NC_012440.1 1104111 1104560 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prokaryotic N- methylation motif domain protein complement(1104111..1104560) Persephonella marina EX-H1 7675685 YP_002730936.1 CDS PERMA_1154 NC_012440.1 1104545 1108315 R hypothetical protein complement(1104545..1108315) Persephonella marina EX-H1 7675757 YP_002730937.1 CDS PERMA_1155 NC_012440.1 1108215 1108553 R hypothetical protein complement(1108215..1108553) Persephonella marina EX-H1 7675643 YP_002730938.1 CDS PERMA_1156 NC_012440.1 1108626 1109588 R identified by Glimmer3; hypothetical protein complement(1108626..1109588) Persephonella marina EX-H1 7675394 YP_002730939.1 CDS PERMA_1157 NC_012440.1 1109585 1110229 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two component transcriptional regulator, winged helix family complement(1109585..1110229) Persephonella marina EX-H1 7674869 YP_002730940.1 CDS ispD NC_012440.1 1110303 1110971 D identified by match to protein family HMM PF01128; match to protein family HMM TIGR00453; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1110303..1110971 Persephonella marina EX-H1 7676164 YP_002730941.1 CDS PERMA_1158 NC_012440.1 1110968 1111600 R identified by match to protein family HMM PF00300; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (phosphoglyceromutase) (pgam) (bpg-dependent pgam) (dpgm) complement(1110968..1111600) Persephonella marina EX-H1 7674538 YP_002730942.1 CDS PERMA_1160 NC_012440.1 1111597 1112064 R identified by match to protein family HMM PF00583; bifunctional protein argHA complement(1111597..1112064) Persephonella marina EX-H1 7675439 YP_002730943.1 CDS lon NC_012440.1 1112061 1114466 R identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La complement(1112061..1114466) Persephonella marina EX-H1 7674836 YP_002730944.1 CDS PERMA_1162 NC_012440.1 1114469 1114807 R identified by match to protein family HMM PF00011; heat shock protein Hsp20 complement(1114469..1114807) Persephonella marina EX-H1 7675805 YP_002730945.1 CDS trmD NC_012440.1 1114837 1115601 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1114837..1115601) Persephonella marina EX-H1 7674725 YP_002730946.1 CDS PERMA_1165 NC_012440.1 1116095 1116535 D identified by match to protein family HMM PF03938; outer membrane chaperone Skp 1116095..1116535 Persephonella marina EX-H1 7674215 YP_002730947.1 CDS PERMA_1166 NC_012440.1 1116535 1117302 D identified by match to protein family HMM PF01887; DUF62-containing protein 1116535..1117302 Persephonella marina EX-H1 7674568 YP_002730948.1 CDS PERMA_1168 NC_012440.1 1117307 1117513 D identified by Glimmer3; hypothetical protein 1117307..1117513 Persephonella marina EX-H1 7675628 YP_002730949.1 CDS PERMA_1167 NC_012440.1 1117510 1119951 R identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553; long-chain-fatty-acid CoA ligase complement(1117510..1119951) Persephonella marina EX-H1 7676155 YP_002730950.1 CDS PERMA_1172 NC_012440.1 1120394 1120780 D hypothetical protein 1120394..1120780 Persephonella marina EX-H1 7674923 YP_002730951.1 CDS PERMA_1173 NC_012440.1 1120803 1121048 R identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; hypothetical protein complement(1120803..1121048) Persephonella marina EX-H1 7675589 YP_002730952.1 CDS PERMA_1174 NC_012440.1 1121059 1121550 R identified by match to protein family HMM PF00578; bacterioferritin comigratory protein complement(1121059..1121550) Persephonella marina EX-H1 7676117 YP_002730953.1 CDS PERMA_1175 NC_012440.1 1121543 1122124 R identified by match to protein family HMM PF05728; esterase complement(1121543..1122124) Persephonella marina EX-H1 7675513 YP_002730954.1 CDS tuf_1 NC_012440.1 1122719 1123909 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1122719..1123909 Persephonella marina EX-H1 7675637 YP_002730955.1 CDS rpmG NC_012440.1 1123930 1124082 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 1123930..1124082 Persephonella marina EX-H1 7674381 YP_002730956.1 CDS secE NC_012440.1 1124191 1124379 D identified by match to protein family HMM PF00584; match to protein family HMM TIGR00964; preprotein translocase, SecE subunit 1124191..1124379 Persephonella marina EX-H1 7675639 YP_002730957.1 CDS nusG NC_012440.1 1124396 1125190 D identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription termination/antitermination factor NusG 1124396..1125190 Persephonella marina EX-H1 7675979 YP_002730958.1 CDS rplK NC_012440.1 1125215 1125652 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1125215..1125652 Persephonella marina EX-H1 7674239 YP_002730959.1 CDS rplA NC_012440.1 1125655 1126383 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1125655..1126383 Persephonella marina EX-H1 7675798 YP_002730960.1 CDS rplJ NC_012440.1 1126400 1126945 D identified by match to protein family HMM PF00466; ribosomal protein L10 1126400..1126945 Persephonella marina EX-H1 7674656 YP_002730961.1 CDS rplL NC_012440.1 1126984 1127367 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1126984..1127367 Persephonella marina EX-H1 7674696 YP_002730962.1 CDS rpoB NC_012440.1 1127492 1131967 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; betsubunit A is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1127492..1131967 Persephonella marina EX-H1 7675131 YP_002730963.1 CDS rpoC NC_012440.1 1132018 1136778 D identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; DNA-directed RNA polymerase, beta' subunit 1132018..1136778 Persephonella marina EX-H1 7676078 YP_002730964.1 CDS rpsL NC_012440.1 1136986 1137363 D identified by match to protein family HMM PF00164; match to protein family HMM TIGR00981; 30S ribosomal protein S12 1136986..1137363 Persephonella marina EX-H1 7674195 YP_002730965.1 CDS rpsG NC_012440.1 1137383 1137862 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1137383..1137862 Persephonella marina EX-H1 7675378 YP_002730966.1 CDS fusA NC_012440.1 1137930 1140014 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1137930..1140014 Persephonella marina EX-H1 7675501 YP_002730967.1 CDS tuf_2 NC_012440.1 1140047 1141237 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1140047..1141237 Persephonella marina EX-H1 7675567 YP_002730968.1 CDS rpsJ NC_012440.1 1141253 1141564 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1141253..1141564 Persephonella marina EX-H1 7675945 YP_002730969.1 CDS rplC NC_012440.1 1141583 1142266 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1141583..1142266 Persephonella marina EX-H1 7675231 YP_002730970.1 CDS rplD NC_012440.1 1142293 1142916 D identified by match to protein family HMM PF00573; ribosomal protein, L4/L1 family 1142293..1142916 Persephonella marina EX-H1 7674596 YP_002730971.1 CDS rplW NC_012440.1 1142916 1143215 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1142916..1143215 Persephonella marina EX-H1 7675556 YP_002730972.1 CDS rplB NC_012440.1 1143229 1144053 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1143229..1144053 Persephonella marina EX-H1 7675045 YP_002730973.1 CDS rpsS NC_012440.1 1144056 1144355 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1144056..1144355 Persephonella marina EX-H1 7675580 YP_002730974.1 CDS rplV NC_012440.1 1144368 1144718 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1144368..1144718 Persephonella marina EX-H1 7674548 YP_002730975.1 CDS rpsC NC_012440.1 1144731 1145414 D identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; 30S ribosomal protein S3 1144731..1145414 Persephonella marina EX-H1 7675337 YP_002730976.1 CDS rplP NC_012440.1 1145437 1145859 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1145437..1145859 Persephonella marina EX-H1 7674975 YP_002730977.1 CDS rpmC NC_012440.1 1145864 1146070 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1145864..1146070 Persephonella marina EX-H1 7675370 YP_002730978.1 CDS rpsQ NC_012440.1 1146070 1146330 D identified by match to protein family HMM PF00366; match to protein family HMM TIGR03635; 30S ribosomal protein S17 1146070..1146330 Persephonella marina EX-H1 7675493 YP_002730979.1 CDS rplN NC_012440.1 1146420 1146800 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1146420..1146800 Persephonella marina EX-H1 7676122 YP_002730980.1 CDS rplX NC_012440.1 1146804 1147169 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1146804..1147169 Persephonella marina EX-H1 7675066 YP_002730981.1 CDS rplE NC_012440.1 1147183 1147746 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1147183..1147746 Persephonella marina EX-H1 7675101 YP_002730982.1 CDS rpsN NC_012440.1 1147762 1147950 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 1147762..1147950 Persephonella marina EX-H1 7674610 YP_002730983.1 CDS rpsH NC_012440.1 1147962 1148372 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1147962..1148372 Persephonella marina EX-H1 7675888 YP_002730984.1 CDS rplF NC_012440.1 1148405 1148944 D identified by match to protein family HMM PF00347; match to protein family HMM TIGR03654; 50S ribosomal protein L6 1148405..1148944 Persephonella marina EX-H1 7675129 YP_002730985.1 CDS rplR NC_012440.1 1148967 1149338 D identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060; 50S ribosomal protein L18 1148967..1149338 Persephonella marina EX-H1 7674352 YP_002730986.1 CDS rpsE NC_012440.1 1149350 1149934 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1149350..1149934 Persephonella marina EX-H1 7675672 YP_002730987.1 CDS rpmD NC_012440.1 1149946 1150125 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1149946..1150125 Persephonella marina EX-H1 7675733 YP_002730988.1 CDS rplO NC_012440.1 1150125 1150577 D late assembly protein; 50S ribosomal protein L15 1150125..1150577 Persephonella marina EX-H1 7674481 YP_002730989.1 CDS secY NC_012440.1 1150603 1151895 D identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967; preprotein translocase, SecY subunit 1150603..1151895 Persephonella marina EX-H1 7675089 YP_002730990.1 CDS PERMA_1217 NC_012440.1 1151898 1152518 D identified by match to protein family HMM PF00406; match to protein family HMM TIGR01351; adenylate kinase (ATP-AMP transphosphorylase) 1151898..1152518 Persephonella marina EX-H1 7674614 YP_002730991.1 CDS map NC_012440.1 1152531 1153292 D identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase, type I 1152531..1153292 Persephonella marina EX-H1 7675294 YP_002730992.1 CDS infA NC_012440.1 1153303 1153539 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1153303..1153539 Persephonella marina EX-H1 7675164 YP_002730993.1 CDS rpmJ NC_012440.1 1153549 1153662 D identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; ribosomal protein L36 1153549..1153662 Persephonella marina EX-H1 7676179 YP_002730994.1 CDS rpsM NC_012440.1 1153676 1154026 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1153676..1154026 Persephonella marina EX-H1 7675586 YP_002730995.1 CDS rpsK NC_012440.1 1154050 1154439 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1154050..1154439 Persephonella marina EX-H1 7674601 YP_002730996.1 CDS rpsD NC_012440.1 1154443 1155060 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1154443..1155060 Persephonella marina EX-H1 7674561 YP_002730997.1 CDS rpoA NC_012440.1 1155102 1156076 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alphsubunit A is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1155102..1156076 Persephonella marina EX-H1 7675510 YP_002730998.1 CDS rplQ NC_012440.1 1156090 1156464 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1156090..1156464 Persephonella marina EX-H1 7675208 YP_002730999.1 CDS PERMA_1227 NC_012440.1 1156467 1156769 D identified by match to protein family HMM PF02325; yggt family protein 1156467..1156769 Persephonella marina EX-H1 7674470 YP_002731000.1 CDS PERMA_1226 NC_012440.1 1156739 1157662 R identified by Glimmer3; hypothetical protein complement(1156739..1157662) Persephonella marina EX-H1 7675417 YP_002731001.1 CDS PERMA_1228 NC_012440.1 1157659 1158669 R identified by Glimmer3; hypothetical protein complement(1157659..1158669) Persephonella marina EX-H1 7676030 YP_002731002.1 CDS ilvE NC_012440.1 1158666 1159574 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(1158666..1159574) Persephonella marina EX-H1 7674535 YP_002731003.1 CDS PERMA_1230 NC_012440.1 1159686 1160819 D identified by match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase (aons) (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase)(7-kap synthetase) (l-alanine--pimelyl-coa ligase) 1159686..1160819 Persephonella marina EX-H1 7674464 YP_002731004.1 CDS PERMA_1231 NC_012440.1 1160816 1161049 D identified by Glimmer3; hypothetical protein 1160816..1161049 Persephonella marina EX-H1 7676028 YP_002731005.1 CDS PERMA_1233 NC_012440.1 1161054 1162019 D Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 1161054..1162019 Persephonella marina EX-H1 7675975 YP_002731006.1 CDS PERMA_1232 NC_012440.1 1162016 1162762 R hypothetical protein complement(1162016..1162762) Persephonella marina EX-H1 7674595 YP_002731007.1 CDS PERMA_1234 NC_012440.1 1162816 1162992 D identified by Glimmer3; hypothetical protein 1162816..1162992 Persephonella marina EX-H1 7674252 YP_002731008.1 CDS PERMA_1235 NC_012440.1 1162994 1165057 R identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor complement(1162994..1165057) Persephonella marina EX-H1 7675706 YP_002731009.1 CDS PERMA_1236 NC_012440.1 1165057 1166010 R identified by match to protein family HMM PF09084; nitrate/sulfonate/bicarbonate ABC transporter complement(1165057..1166010) Persephonella marina EX-H1 7674645 YP_002731010.1 CDS PERMA_1237 NC_012440.1 1166076 1166411 R Fe-S cluster assembly protein NifU complement(1166076..1166411) Persephonella marina EX-H1 7675112 YP_002731011.1 CDS PERMA_1238 NC_012440.1 1166547 1167488 R identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121; biotin-(acetyl-CoA-carboxylase) ligase complement(1166547..1167488) Persephonella marina EX-H1 7674178 YP_002731012.1 CDS PERMA_1239 NC_012440.1 1167567 1168568 D identified by match to protein family HMM PF00591; match to protein family HMM PF02885; glycosyl transferase family, a/b domain protein 1167567..1168568 Persephonella marina EX-H1 7676068 YP_002731013.1 CDS lepA NC_012440.1 1168579 1170381 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1168579..1170381) Persephonella marina EX-H1 7674863 YP_002731014.1 CDS PERMA_1241 NC_012440.1 1170443 1170925 R lipoprotein complement(1170443..1170925) Persephonella marina EX-H1 7675320 YP_002731015.1 CDS PERMA_1242 NC_012440.1 1170925 1171302 R identified by Glimmer3; hypothetical protein complement(1170925..1171302) Persephonella marina EX-H1 7675876 YP_002731016.1 CDS PERMA_1243 NC_012440.1 1171303 1171563 R identified by Glimmer3; hypothetical protein complement(1171303..1171563) Persephonella marina EX-H1 7675775 YP_002731017.1 CDS PERMA_1244 NC_012440.1 1171573 1171863 R identified by match to protein family HMM PF07883; hypothetical protein complement(1171573..1171863) Persephonella marina EX-H1 7675955 YP_002731018.1 CDS PERMA_1245 NC_012440.1 1171860 1172306 R identified by Glimmer3; hypothetical protein complement(1171860..1172306) Persephonella marina EX-H1 7674457 YP_002731019.1 CDS PERMA_1246 NC_012440.1 1172318 1172920 R identified by match to protein family HMM PF03548; outer membrane lipoprotein carrier protein LolA complement(1172318..1172920) Persephonella marina EX-H1 7674901 YP_002731020.1 CDS PERMA_1247 NC_012440.1 1172932 1173750 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin domain protein complement(1172932..1173750) Persephonella marina EX-H1 7676114 YP_002731021.1 CDS PERMA_1248 NC_012440.1 1173841 1174788 R identified by match to protein family HMM PF01171; match to protein family HMM TIGR00269; PP-loop domain protein complement(1173841..1174788) Persephonella marina EX-H1 7674589 YP_002731022.1 CDS PERMA_1249 NC_012440.1 1174799 1175002 R identified by match to protein family HMM PF02597; hypothetical protein complement(1174799..1175002) Persephonella marina EX-H1 7675422 YP_002731023.1 CDS PERMA_1250 NC_012440.1 1175041 1175790 R identified by match to protein family HMM PF05013; N-formylglutamate amidohydrolase complement(1175041..1175790) Persephonella marina EX-H1 7674519 YP_002731024.1 CDS PERMA_1251 NC_012440.1 1175790 1177403 R identified by match to protein family HMM PF01019; gamma-glutamyltransferase complement(1175790..1177403) Persephonella marina EX-H1 7674799 YP_002731025.1 CDS PERMA_1252 NC_012440.1 1177405 1178382 R identified by match to protein family HMM PF01071; match to protein family HMM PF02655; match to protein family HMM PF07478; D-alanine--D-alanine ligase complement(1177405..1178382) Persephonella marina EX-H1 7674571 YP_002731026.1 CDS PERMA_1253 NC_012440.1 1178446 1178856 R identified by match to protein family HMM PF00293; adp-ribose pyrophosphatase (adp-ribose diphosphatase)(adenosine diphosphoribose pyrophosphatase) (adpr-ppase) (adp-ribosephosphohydrolase) complement(1178446..1178856) Persephonella marina EX-H1 7674347 YP_002731027.1 CDS PERMA_1254 NC_012440.1 1178992 1179381 D cytochrome c-552 (cytochrome c552) 1178992..1179381 Persephonella marina EX-H1 7675659 YP_002731028.1 CDS PERMA_1255 NC_012440.1 1179412 1180038 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcription regulator complement(1179412..1180038) Persephonella marina EX-H1 7674953 YP_002731029.1 CDS PERMA_1256 NC_012440.1 1180166 1180516 D identified by match to protein family HMM PF00034; cytochrome c-552 (cytochrome c552) 1180166..1180516 Persephonella marina EX-H1 7675127 YP_002731030.1 CDS PERMA_1257 NC_012440.1 1180529 1182478 D identified by match to protein family HMM PF00116; nitrous-oxide reductase 1180529..1182478 Persephonella marina EX-H1 7675645 YP_002731031.1 CDS PERMA_1258 NC_012440.1 1182493 1183071 D hypothetical protein 1182493..1183071 Persephonella marina EX-H1 7674729 YP_002731032.1 CDS PERMA_1259 NC_012440.1 1183073 1183570 D nitrous-oxide reductase accessory protein NosL 1183073..1183570 Persephonella marina EX-H1 7675927 YP_002731033.1 CDS PERMA_1260 NC_012440.1 1183597 1184850 D identified by match to protein family HMM PF05048; periplasmic copper-binding protein NosD 1183597..1184850 Persephonella marina EX-H1 7674342 YP_002731034.1 CDS PERMA_1261 NC_012440.1 1184838 1185557 D identified by match to protein family HMM PF00005; copper-transport ATP-binding protein NosF 1184838..1185557 Persephonella marina EX-H1 7674287 YP_002731035.1 CDS PERMA_1262 NC_012440.1 1185550 1186332 D nitrous-oxide metabolic protein NosY 1185550..1186332 Persephonella marina EX-H1 7675694 YP_002731036.1 CDS PERMA_1263 NC_012440.1 1186342 1186680 D identified by match to protein family HMM PF00034; cytochrome c family protein 1186342..1186680 Persephonella marina EX-H1 7675618 YP_002731037.1 CDS PERMA_1264 NC_012440.1 1186681 1187103 R identified by match to protein family HMM PF04314; hypothetical protein complement(1186681..1187103) Persephonella marina EX-H1 7675923 YP_002731038.1 CDS PERMA_1265 NC_012440.1 1187105 1187701 R identified by match to protein family HMM PF00578; match to protein family HMM PF02630; electron transport protein SCO1/SenC complement(1187105..1187701) Persephonella marina EX-H1 7675961 YP_002731039.1 CDS PERMA_1266 NC_012440.1 1187900 1189984 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane protein C 1187900..1189984 Persephonella marina EX-H1 7675360 YP_002731040.1 CDS PERMA_1267 NC_012440.1 1190044 1191123 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator receiver modulated diguanylate cyclase complement(1190044..1191123) Persephonella marina EX-H1 7674370 YP_002731041.1 CDS lpxK NC_012440.1 1191260 1192237 D identified by match to protein family HMM PF02606; match to protein family HMM TIGR00682; tetraacyldisaccharide 4'-kinase 1191260..1192237 Persephonella marina EX-H1 7675347 YP_002731042.1 CDS PERMA_1269 NC_012440.1 1192289 1192912 D identified by match to protein family HMM PF02616; ScpA/B protein 1192289..1192912 Persephonella marina EX-H1 7675384 YP_002731043.1 CDS PERMA_1270 NC_012440.1 1192913 1194673 R identified by match to protein family HMM PF00571; match to protein family HMM PF00654; chloride channel protein complement(1192913..1194673) Persephonella marina EX-H1 7675793 YP_002731044.1 CDS PERMA_1271 NC_012440.1 1194722 1196170 R identified by match to protein family HMM PF02386; Trk system, membrane component complement(1194722..1196170) Persephonella marina EX-H1 7674761 YP_002731045.1 CDS PERMA_1272 NC_012440.1 1196163 1197455 R identified by match to protein family HMM PF02080; match to protein family HMM PF02254; TrkA-N domain family protein complement(1196163..1197455) Persephonella marina EX-H1 7675458 YP_002731046.1 CDS PERMA_1273 NC_012440.1 1197573 1198478 D identified by match to protein family HMM PF04055; radical SAM domain protein 1197573..1198478 Persephonella marina EX-H1 7675124 YP_002731047.1 CDS PERMA_1274 NC_012440.1 1198527 1199540 D identified by match to protein family HMM PF04966; carbohydrate-selective porin, OprB family 1198527..1199540 Persephonella marina EX-H1 7675717 YP_002731048.1 CDS PERMA_1275 NC_012440.1 1199552 1199749 D identified by Glimmer3; hypothetical protein 1199552..1199749 Persephonella marina EX-H1 7674449 YP_002731049.1 CDS PERMA_1276 NC_012440.1 1199746 1200258 D hypothetical protein 1199746..1200258 Persephonella marina EX-H1 7674354 YP_002731050.1 CDS PERMA_1277 NC_012440.1 1200255 1200731 D hypothetical protein 1200255..1200731 Persephonella marina EX-H1 7674350 YP_002731051.1 CDS PERMA_1279 NC_012440.1 1200728 1201177 D hypothetical protein 1200728..1201177 Persephonella marina EX-H1 7674526 YP_002731052.1 CDS PERMA_1278 NC_012440.1 1201136 1202107 R identified by match to protein family HMM PF02424; thiamine biosynthesis lipoprotein complement(1201136..1202107) Persephonella marina EX-H1 7676017 YP_002731053.1 CDS PERMA_1280 NC_012440.1 1202213 1203463 D identified by match to protein family HMM PF07396; Phosphate-selective porin O and P superfamily protein 1202213..1203463 Persephonella marina EX-H1 7675413 YP_002731054.1 CDS PERMA_1282 NC_012440.1 1203476 1205461 D lipoprotein 1203476..1205461 Persephonella marina EX-H1 7676001 YP_002731055.1 CDS PERMA_1281 NC_012440.1 1205458 1206327 R identified by match to protein family HMM PF02153; match to protein family HMM PF03446; prephenate dehydrogenase complement(1205458..1206327) Persephonella marina EX-H1 7675317 YP_002731056.1 CDS PERMA_1283 NC_012440.1 1206337 1207179 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(1206337..1207179) Persephonella marina EX-H1 7675608 YP_002731057.1 CDS PERMA_1284 NC_012440.1 1207173 1208387 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator family transporter complement(1207173..1208387) Persephonella marina EX-H1 7674969 YP_002731058.1 CDS carA NC_012440.1 1208387 1209517 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1208387..1209517) Persephonella marina EX-H1 7675825 YP_002731059.1 CDS ispE NC_012440.1 1209621 1210445 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1209621..1210445 Persephonella marina EX-H1 7674989 YP_002731060.1 CDS PERMA_1288 NC_012440.1 1210574 1211509 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-Phosphate pyrophosphokinase 1210574..1211509 Persephonella marina EX-H1 7674942 YP_002731061.1 CDS PERMA_1289 NC_012440.1 1211527 1212126 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1211527..1212126 Persephonella marina EX-H1 7674663 YP_002731062.1 CDS pth NC_012440.1 1212126 1212695 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1212126..1212695 Persephonella marina EX-H1 7676123 YP_002731063.1 CDS rpsF NC_012440.1 1212762 1213109 D identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166; ribosomal protein S6 1212762..1213109 Persephonella marina EX-H1 7674495 YP_002731064.1 CDS PERMA_1292 NC_012440.1 1213120 1213533 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein family protein 1213120..1213533 Persephonella marina EX-H1 7675613 YP_002731065.1 CDS rpsR NC_012440.1 1213557 1213811 D identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165; ribosomal protein S18 1213557..1213811 Persephonella marina EX-H1 7674710 YP_002731066.1 CDS rplI NC_012440.1 1213826 1214275 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1213826..1214275 Persephonella marina EX-H1 7675833 YP_002731067.1 CDS dnaB NC_012440.1 1214385 1215836 D identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 1214385..1215836 Persephonella marina EX-H1 7674810 YP_002731068.1 CDS PERMA_1296 NC_012440.1 1215838 1216584 D identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; organic solvent ABC transporter permease 1215838..1216584 Persephonella marina EX-H1 7675172 YP_002731069.1 CDS PERMA_1297 NC_012440.1 1216613 1216900 D identified by Glimmer3; hypothetical protein 1216613..1216900 Persephonella marina EX-H1 7676019 YP_002731070.1 CDS pfkA NC_012440.1 1216903 1217877 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1216903..1217877 Persephonella marina EX-H1 7674339 YP_002731071.1 CDS PERMA_1299 NC_012440.1 1217900 1218175 D septation protein spoVG 1217900..1218175 Persephonella marina EX-H1 7675277 YP_002731072.1 CDS PERMA_1300 NC_012440.1 1218176 1218898 R hypothetical protein complement(1218176..1218898) Persephonella marina EX-H1 7674599 YP_002731073.1 CDS PERMA_1301 NC_012440.1 1218955 1219242 R ferredoxin EncQ complement(1218955..1219242) Persephonella marina EX-H1 7675473 YP_002731074.1 CDS lnt NC_012440.1 1219322 1220836 D identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase 1219322..1220836 Persephonella marina EX-H1 7676129 YP_002731075.1 CDS PERMA_1304 NC_012440.1 1221051 1222157 D identified by Glimmer3; hypothetical protein 1221051..1222157 Persephonella marina EX-H1 7674930 YP_002731076.1 CDS PERMA_1305 NC_012440.1 1222390 1222506 D identified by Glimmer3; hypothetical protein 1222390..1222506 Persephonella marina EX-H1 7675766 YP_002731077.1 CDS PERMA_1306 NC_012440.1 1222851 1223561 R identified by match to protein family HMM PF01863; zinc metalloprotease complement(1222851..1223561) Persephonella marina EX-H1 7674247 YP_002731078.1 CDS hsdR NC_012440.1 1223563 1226724 R identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction enzyme R protein (HsdR) complement(1223563..1226724) Persephonella marina EX-H1 7674296 YP_002731079.1 CDS PERMA_1308 NC_012440.1 1226727 1228946 R macrophage infection protein, MimD complement(1226727..1228946) Persephonella marina EX-H1 7675925 YP_002731080.1 CDS PERMA_1309 NC_012440.1 1228897 1230243 R identified by match to protein family HMM PF01420; type I restriction-modification system specificty subunit complement(1228897..1230243) Persephonella marina EX-H1 7674988 YP_002731081.1 CDS PERMA_1310 NC_012440.1 1230236 1231006 R identified by match to protein family HMM TIGR02391; hypothetical protein complement(1230236..1231006) Persephonella marina EX-H1 7674778 YP_002731082.1 CDS hsdM NC_012440.1 1231017 1233713 R identified by match to protein family HMM PF01170; match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction enzyme M protein (HsdM) complement(1231017..1233713) Persephonella marina EX-H1 7674868 YP_002731083.1 CDS PERMA_1312 NC_012440.1 1233974 1235143 R hypothetical protein complement(1233974..1235143) Persephonella marina EX-H1 7675962 YP_002731084.1 CDS PERMA_1313 NC_012440.1 1235161 1236072 R identified by match to protein family HMM PF05621; transposon, transposition helper protein C complement(1235161..1236072) Persephonella marina EX-H1 7675163 YP_002731085.1 CDS PERMA_1314 NC_012440.1 1236077 1237936 R identified by match to protein family HMM PF00665; match to protein family HMM PF09299; TniA transposase complement(1236077..1237936) Persephonella marina EX-H1 7676026 YP_002731086.1 CDS PERMA_1315 NC_012440.1 1238311 1238457 R hypothetical protein complement(1238311..1238457) Persephonella marina EX-H1 7675641 YP_002731087.1 CDS PERMA_1316 NC_012440.1 1239276 1239716 D lipoprotein 1239276..1239716 Persephonella marina EX-H1 7674338 YP_002731088.1 CDS PERMA_1319 NC_012440.1 1240175 1241335 D identified by match to protein family HMM PF01637; ATPase 1240175..1241335 Persephonella marina EX-H1 7674944 YP_002731089.1 CDS PERMA_1320 NC_012440.1 1241515 1242159 R identified by match to protein family HMM PF04055; radical SAM domain protein complement(1241515..1242159) Persephonella marina EX-H1 7674866 YP_002731090.1 CDS PERMA_1321 NC_012440.1 1242247 1242597 R hypothetical protein complement(1242247..1242597) Persephonella marina EX-H1 7674685 YP_002731091.1 CDS PERMA_1322 NC_012440.1 1242609 1243100 R identified by Glimmer3; hypothetical protein complement(1242609..1243100) Persephonella marina EX-H1 7675668 YP_002731092.1 CDS tig NC_012440.1 1243221 1244561 D identified by match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115; trigger factor 1243221..1244561 Persephonella marina EX-H1 7674809 YP_002731093.1 CDS clpP NC_012440.1 1244565 1245173 D identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493; ATP-dependent Clp protease, proteolytic subunit ClpP 1244565..1245173 Persephonella marina EX-H1 7675916 YP_002731094.1 CDS clpX NC_012440.1 1245176 1246411 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1245176..1246411 Persephonella marina EX-H1 7675374 YP_002731095.1 CDS ysxC NC_012440.1 1246413 1247024 D identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR03598; ribosome biogenesis GTP-binding protein YsxC 1246413..1247024 Persephonella marina EX-H1 7676119 YP_002731096.1 CDS trpA NC_012440.1 1247078 1247848 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1247078..1247848 Persephonella marina EX-H1 7674476 YP_002731097.1 CDS hisH NC_012440.1 1247845 1248465 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1247845..1248465 Persephonella marina EX-H1 7675991 YP_002731098.1 CDS hemN NC_012440.1 1248555 1249940 D identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; oxygen-independent coproporphyrinogen III oxidase 1248555..1249940 Persephonella marina EX-H1 7675013 YP_002731099.1 CDS PERMA_1330 NC_012440.1 1249941 1250210 D identified by Glimmer3; hypothetical protein 1249941..1250210 Persephonella marina EX-H1 7674213 YP_002731100.1 CDS PERMA_1331 NC_012440.1 1250252 1251181 D hypothetical protein 1250252..1251181 Persephonella marina EX-H1 7675880 YP_002731101.1 CDS uvrA NC_012440.1 1251248 1254013 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1251248..1254013 Persephonella marina EX-H1 7674963 YP_002731102.1 CDS cas_2 NC_012440.1 1255188 1255985 D identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877; CRISPR-associated protein Cas6 1255188..1255985 Persephonella marina EX-H1 7675545 YP_002731103.1 CDS PERMA_1334 NC_012440.1 1255985 1257688 D identified by match to protein family HMM TIGR01908; CRISPR-associated cxxc_cxxc protein Cst1 1255985..1257688 Persephonella marina EX-H1 7675711 YP_002731104.1 CDS cst NC_012440.1 1257681 1258613 D identified by match to protein family HMM TIGR01875; match to protein family HMM TIGR02585; CRISPR-associated regulatory protein, devr family 1257681..1258613 Persephonella marina EX-H1 7675732 YP_002731105.1 CDS PERMA_1336 NC_012440.1 1258684 1258932 D identified by match to protein family HMM TIGR01552; prevent-host-death family protein 1258684..1258932 Persephonella marina EX-H1 7675097 YP_002731106.1 CDS cas5t NC_012440.1 1259189 1259950 D identified by match to protein family HMM TIGR01895; match to protein family HMM TIGR02593; CRISPR-associated protein Cas5, tneap subtype 1259189..1259950 Persephonella marina EX-H1 7674249 YP_002731107.1 CDS PERMA_1338 NC_012440.1 1259969 1262218 D identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587; match to protein family HMM TIGR01596; CRISPR-associated helicase Cas3 1259969..1262218 Persephonella marina EX-H1 7676102 YP_002731108.1 CDS PERMA_1339 NC_012440.1 1262347 1263135 D YcgL 1262347..1263135 Persephonella marina EX-H1 7675713 YP_002731109.1 CDS cas_3 NC_012440.1 1263120 1263632 D identified by match to protein family HMM PF01930; match to protein family HMM TIGR00372; CRISPR-associated protein Cas4 1263120..1263632 Persephonella marina EX-H1 7674680 YP_002731110.1 CDS PERMA_1341 NC_012440.1 1263636 1265981 R hypothetical protein complement(1263636..1265981) Persephonella marina EX-H1 7675622 YP_002731111.1 CDS PERMA_1342 NC_012440.1 1266004 1267401 R identified by match to protein family HMM PF04411; hypothetical protein complement(1266004..1267401) Persephonella marina EX-H1 7675997 YP_002731112.1 CDS cas_4 NC_012440.1 1267468 1268463 D identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287; match to protein family HMM TIGR03641; CRISPR-associated protein Cas1 1267468..1268463 Persephonella marina EX-H1 7675393 YP_002731113.1 CDS PERMA_1344 NC_012440.1 1268465 1268731 D identified by match to protein family HMM PF02647; match to protein family HMM TIGR01573; CRISPR-associated protein Cas2 1268465..1268731 Persephonella marina EX-H1 7675932 YP_002731114.1 CDS PERMA_1345 NC_012440.1 1269008 1269172 R identified by Glimmer3; hypothetical protein complement(1269008..1269172) Persephonella marina EX-H1 7674400 YP_002731115.1 CDS PERMA_1346 NC_012440.1 1269835 1269963 D identified by Glimmer3; hypothetical protein 1269835..1269963 Persephonella marina EX-H1 7675186 YP_002731116.1 CDS PERMA_1347 NC_012440.1 1270051 1270290 R identified by Glimmer3; hypothetical protein complement(1270051..1270290) Persephonella marina EX-H1 7675219 YP_002731117.1 CDS PERMA_1348 NC_012440.1 1270403 1271854 R lipoprotein complement(1270403..1271854) Persephonella marina EX-H1 7675204 YP_002731118.1 CDS PERMA_1349 NC_012440.1 1272816 1273445 D identified by match to protein family HMM PF08241; SAM-dependent methyltransferase, UbiE/COQ5 family 1272816..1273445 Persephonella marina EX-H1 7675555 YP_002731119.1 CDS PERMA_1350 NC_012440.1 1273446 1274303 R identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein complement(1273446..1274303) Persephonella marina EX-H1 7676109 YP_002731120.1 CDS PERMA_1351 NC_012440.1 1274314 1275402 R identified by match to protein family HMM PF01988; match to protein family HMM PF02915; rubrerythrin subfamily complement(1274314..1275402) Persephonella marina EX-H1 7674434 YP_002731121.1 CDS PERMA_1352 NC_012440.1 1275399 1276595 R identified by match to protein family HMM PF04413; bifunctional glycosyltransferase/methyltransferase complement(1275399..1276595) Persephonella marina EX-H1 7675948 YP_002731122.1 CDS PERMA_1353 NC_012440.1 1276595 1277329 R identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein complement(1276595..1277329) Persephonella marina EX-H1 7674620 YP_002731123.1 CDS lpxB NC_012440.1 1277383 1278522 R identified by match to protein family HMM PF02684; match to protein family HMM TIGR00215; lipid-A-disaccharide synthase complement(1277383..1278522) Persephonella marina EX-H1 7675239 YP_002731124.1 CDS bioB NC_012440.1 1278602 1279612 D identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 1278602..1279612 Persephonella marina EX-H1 7675419 YP_002731125.1 CDS PERMA_1357 NC_012440.1 1279655 1280599 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; VI polysaccharide biosynthesis protein VipB/tviC 1279655..1280599 Persephonella marina EX-H1 7675922 YP_002731126.1 CDS PERMA_1356 NC_012440.1 1280596 1283562 R hypothetical protein complement(1280596..1283562) Persephonella marina EX-H1 7675815 YP_002731127.1 CDS PERMA_1358 NC_012440.1 1284631 1287333 R polysaccharide deacetylase complement(1284631..1287333) Persephonella marina EX-H1 7674724 YP_002731128.1 CDS PERMA_1359 NC_012440.1 1287311 1288684 R PelG complement(1287311..1288684) Persephonella marina EX-H1 7675350 YP_002731129.1 CDS PERMA_1360 NC_012440.1 1288660 1290192 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 complement(1288660..1290192) Persephonella marina EX-H1 7675612 YP_002731130.1 CDS PERMA_1361 NC_012440.1 1290192 1291178 R hypothetical protein complement(1290192..1291178) Persephonella marina EX-H1 7674337 YP_002731131.1 CDS PERMA_1362 NC_012440.1 1291181 1292428 R identified by Glimmer3; hypothetical protein complement(1291181..1292428) Persephonella marina EX-H1 7675832 YP_002731132.1 CDS PERMA_1363 NC_012440.1 1292429 1292932 R lipoprotein complement(1292429..1292932) Persephonella marina EX-H1 7675386 YP_002731133.1 CDS PERMA_1364 NC_012440.1 1292962 1293849 R similar to protein found in mitochondrial proteome protein 30; identified by match to protein family HMM PF00753; N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase d, (nape-hydrolyzing phospholipased) (nape-pld) complement(1292962..1293849) Persephonella marina EX-H1 7675943 YP_002731134.1 CDS PERMA_1365 NC_012440.1 1293803 1294588 R identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein complement(1293803..1294588) Persephonella marina EX-H1 7675578 YP_002731135.1 CDS upp NC_012440.1 1294648 1295274 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01091; uracil phosphoribosyltransferase 1294648..1295274 Persephonella marina EX-H1 7676156 YP_002731136.1 CDS PERMA_1367 NC_012440.1 1295271 1295879 D identified by match to protein family HMM PF01810; transporter, LysE family 1295271..1295879 Persephonella marina EX-H1 7675693 YP_002731137.1 CDS PERMA_1368 NC_012440.1 1295881 1296744 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NADH dehydrogenase 1295881..1296744 Persephonella marina EX-H1 7674277 YP_002731138.1 CDS PERMA_1369 NC_012440.1 1296746 1297054 D identified by Glimmer3; hypothetical protein 1296746..1297054 Persephonella marina EX-H1 7674699 YP_002731139.1 CDS PERMA_1370 NC_012440.1 1297057 1298448 D peptidoglycan-binding domain 1 protein 1297057..1298448 Persephonella marina EX-H1 7675785 YP_002731140.1 CDS PERMA_1371 NC_012440.1 1298445 1299530 D hypothetical protein 1298445..1299530 Persephonella marina EX-H1 7675275 YP_002731141.1 CDS PERMA_1373 NC_012440.1 1299500 1300588 D identified by match to protein family HMM TIGR01409; Tat pathway signal sequence domain protein 1299500..1300588 Persephonella marina EX-H1 7674736 YP_002731142.1 CDS PERMA_1372 NC_012440.1 1300585 1301994 R hypothetical protein complement(1300585..1301994) Persephonella marina EX-H1 7675071 YP_002731143.1 CDS PERMA_1374 NC_012440.1 1302732 1302995 R identified by Glimmer3; hypothetical protein complement(1302732..1302995) Persephonella marina EX-H1 7674194 YP_002731144.1 CDS PERMA_1375 NC_012440.1 1303006 1303125 R identified by Glimmer3; hypothetical protein complement(1303006..1303125) Persephonella marina EX-H1 7675485 YP_002731145.1 CDS PERMA_1376 NC_012440.1 1303294 1304391 R identified by Glimmer3; hypothetical protein complement(1303294..1304391) Persephonella marina EX-H1 7674662 YP_002731146.1 CDS PERMA_1377 NC_012440.1 1304527 1304871 R identified by Glimmer3; hypothetical protein complement(1304527..1304871) Persephonella marina EX-H1 7675250 YP_002731147.1 CDS PERMA_1378 NC_012440.1 1304902 1305864 R identified by Glimmer3; hypothetical protein complement(1304902..1305864) Persephonella marina EX-H1 7674759 YP_002731148.1 CDS PERMA_1379 NC_012440.1 1305987 1306904 R identified by Glimmer3; hypothetical protein complement(1305987..1306904) Persephonella marina EX-H1 7675964 YP_002731149.1 CDS surE NC_012440.1 1307386 1308159 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(1307386..1308159) Persephonella marina EX-H1 7675988 YP_002731150.1 CDS PERMA_1382 NC_012440.1 1308306 1308596 R identified by match to protein family HMM PF00216; histone family protein DNA-binding protein complement(1308306..1308596) Persephonella marina EX-H1 7674941 YP_002731151.1 CDS PERMA_1383 NC_012440.1 1308637 1309155 R identified by match to protein family HMM PF00132; transferase, hexapeptide repeat family complement(1308637..1309155) Persephonella marina EX-H1 7676141 YP_002731152.1 CDS PERMA_1384 NC_012440.1 1309142 1309261 R identified by Glimmer3; hypothetical protein complement(1309142..1309261) Persephonella marina EX-H1 7675383 YP_002731153.1 CDS PERMA_1385 NC_012440.1 1309262 1309747 R identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase (ptps)(ptp synthase) complement(1309262..1309747) Persephonella marina EX-H1 7674791 YP_002731154.1 CDS PERMA_1386 NC_012440.1 1309759 1310538 R identified by match to protein family HMM PF00175; dihydroorotate dehydrogenase electron transfer subunit complement(1309759..1310538) Persephonella marina EX-H1 7676034 YP_002731155.1 CDS sdhA NC_012440.1 1310643 1312352 R identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816; succinate dehydrogenase, flavoprotein subunit complement(1310643..1312352) Persephonella marina EX-H1 7675630 YP_002731156.1 CDS purD NC_012440.1 1312448 1313737 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(1312448..1313737) Persephonella marina EX-H1 7675316 YP_002731157.1 CDS lysA NC_012440.1 1313764 1315044 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase complement(1313764..1315044) Persephonella marina EX-H1 7675291 YP_002731158.1 CDS minC NC_012440.1 1315128 1315727 D identified by match to protein family HMM PF03775; match to protein family HMM TIGR01222; septum site-determining protein MinC 1315128..1315727 Persephonella marina EX-H1 7675780 YP_002731159.1 CDS minD NC_012440.1 1315747 1316559 D identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 1315747..1316559 Persephonella marina EX-H1 7674617 YP_002731160.1 CDS minE NC_012440.1 1316562 1316816 D identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215; cell division topological specificity factor MinE 1316562..1316816 Persephonella marina EX-H1 7675606 YP_002731161.1 CDS hisG NC_012440.1 1316813 1317469 D identified by match to protein family HMM PF01634; match to protein family HMM TIGR00070; ATP phosphoribosyltransferase 1316813..1317469 Persephonella marina EX-H1 7675009 YP_002731162.1 CDS glmU NC_012440.1 1317471 1318931 D identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 1317471..1318931 Persephonella marina EX-H1 7676008 YP_002731163.1 CDS PERMA_1395 NC_012440.1 1318928 1319788 D identified by match to protein family HMM PF00639; match to protein family HMM PF09312; SurA N- domain family 1318928..1319788 Persephonella marina EX-H1 7674341 YP_002731164.1 CDS trpD NC_012440.1 1319792 1320811 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1319792..1320811 Persephonella marina EX-H1 7674681 YP_002731165.1 CDS PERMA_1397 NC_012440.1 1320814 1321125 D identified by Glimmer3; hypothetical protein 1320814..1321125 Persephonella marina EX-H1 7675837 YP_002731166.1 CDS PERMA_1399 NC_012440.1 1321138 1321923 D identified by match to protein family HMM PF00106; 3-oxoacyl-ACP reductase 1321138..1321923 Persephonella marina EX-H1 7674785 YP_002731167.1 CDS PERMA_1398 NC_012440.1 1321920 1322411 R identified by Glimmer3; hypothetical protein complement(1321920..1322411) Persephonella marina EX-H1 7674951 YP_002731168.1 CDS PERMA_1400 NC_012440.1 1322411 1323136 R identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937; RNA polymerase sigma-D factor (Sigma-28) complement(1322411..1323136) Persephonella marina EX-H1 7675593 YP_002731169.1 CDS PERMA_1401 NC_012440.1 1323150 1324016 R identified by match to protein family HMM PF01656; cobyrinic Acid a,c-diamide synthase complement(1323150..1324016) Persephonella marina EX-H1 7675947 YP_002731170.1 CDS PERMA_1402 NC_012440.1 1324013 1324939 R identified by match to protein family HMM PF00448; GTP-binding signal recognition particle SRP54 G- domain protein complement(1324013..1324939) Persephonella marina EX-H1 7675405 YP_002731171.1 CDS acpS NC_012440.1 1325056 1325433 R identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-ACP synthase complement(1325056..1325433) Persephonella marina EX-H1 7674185 YP_002731172.1 CDS aroK NC_012440.1 1325430 1325924 R identified by match to protein family HMM PF01202; shikimate kinase complement(1325430..1325924) Persephonella marina EX-H1 7674635 YP_002731173.1 CDS PERMA_1405 NC_012440.1 1325924 1326199 R identified by Glimmer3; hypothetical protein complement(1325924..1326199) Persephonella marina EX-H1 7675688 YP_002731174.1 CDS PERMA_1406 NC_012440.1 1326237 1326458 D identified by match to protein family HMM PF02594; protein CPn_0497//CPj0497/CpB0517 1326237..1326458 Persephonella marina EX-H1 7675431 YP_002731175.1 CDS PERMA_1407 NC_012440.1 1326460 1326753 R hypothetical protein complement(1326460..1326753) Persephonella marina EX-H1 7674683 YP_002731176.1 CDS queA NC_012440.1 1326750 1327763 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(1326750..1327763) Persephonella marina EX-H1 7675274 YP_002731177.1 CDS PERMA_1409 NC_012440.1 1327765 1327989 R hypothetical protein complement(1327765..1327989) Persephonella marina EX-H1 7674642 YP_002731178.1 CDS thiE NC_012440.1 1328028 1328657 R identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase complement(1328028..1328657) Persephonella marina EX-H1 7674707 YP_002731179.1 CDS nuoA NC_012440.1 1328770 1329138 D identified by match to protein family HMM PF00507; NADH-quinone oxidoreductase, subunit A 1328770..1329138 Persephonella marina EX-H1 7674891 YP_002731180.1 CDS PERMA_1412 NC_012440.1 1329129 1329674 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1329129..1329674 Persephonella marina EX-H1 7676099 YP_002731181.1 CDS PERMA_1413 NC_012440.1 1329738 1331486 D identified by match to protein family HMM PF00329; match to protein family HMM PF00346; match to protein family HMM TIGR01961; match to protein family HMM TIGR01962; NADH-quinone oxidoreductase subunit c/d (nadhdehydrogenase i subunit c/d) (ndh-1 subunit c/d) (Nuo3/nuo4) 1329738..1331486 Persephonella marina EX-H1 7674451 YP_002731182.1 CDS PERMA_1414 NC_012440.1 1331565 1332575 D identified by match to protein family HMM PF00146; NADH-quinone oxidoreductase subunit h (nadhdehydrogenase i subunit h) (ndh-1 subunit h) 1331565..1332575 Persephonella marina EX-H1 7675453 YP_002731183.1 CDS PERMA_1415 NC_012440.1 1332577 1333179 D identified by match to protein family HMM PF00037; NADH-quinone oxidoreductase subunit i 1332577..1333179 Persephonella marina EX-H1 7674813 YP_002731184.1 CDS PERMA_1416 NC_012440.1 1333170 1333700 D identified by match to protein family HMM PF00499; NADH-quinone oxidoreductase subunit j (nadhdehydrogenase i subunit j) (ndh-1 subunit j) 1333170..1333700 Persephonella marina EX-H1 7675491 YP_002731185.1 CDS PERMA_1417 NC_012440.1 1333700 1334002 D identified by match to protein family HMM PF00420; NADH-quinone oxidoreductase subunit k (nadhdehydrogenase i subunit k) (ndh-1 subunit k) 1333700..1334002 Persephonella marina EX-H1 7674684 YP_002731186.1 CDS nuoL NC_012440.1 1334016 1335962 D identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH-quinone oxidoreductase, l subunit 1334016..1335962 Persephonella marina EX-H1 7675141 YP_002731187.1 CDS PERMA_1419 NC_012440.1 1335974 1337482 D identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-quinone oxidoreductase subunit m (nadhdehydrogenase i subunit m) (ndh-1 subunit m) 1335974..1337482 Persephonella marina EX-H1 7676094 YP_002731188.1 CDS nuoN NC_012440.1 1337486 1338955 D identified by match to protein family HMM PF00361; match to protein family HMM TIGR01770; NADH-quinone oxidoreductase, n subunit 1337486..1338955 Persephonella marina EX-H1 7675937 YP_002731189.1 CDS gmk NC_012440.1 1338956 1339576 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1338956..1339576 Persephonella marina EX-H1 7676196 YP_002731190.1 CDS PERMA_1422 NC_012440.1 1339569 1339910 D identified by match to protein family HMM PF04892; VanZ like family 1339569..1339910 Persephonella marina EX-H1 7675583 YP_002731191.1 CDS rpoZ NC_012440.1 1339950 1340156 D identified by match to protein family HMM TIGR00690; DNA-directed RNA polymerase, omegsubunit A 1339950..1340156 Persephonella marina EX-H1 7674719 YP_002731192.1 CDS PERMA_1424 NC_012440.1 1340165 1341322 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase 1340165..1341322 Persephonella marina EX-H1 7674888 YP_002731193.1 CDS PERMA_1425 NC_012440.1 1341319 1342689 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; type 4 fimbriae expression regulatory protein PilR 1341319..1342689 Persephonella marina EX-H1 7674728 YP_002731194.1 CDS lysS NC_012440.1 1342753 1344492 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1342753..1344492 Persephonella marina EX-H1 7675789 YP_002731195.1 CDS PERMA_1427 NC_012440.1 1344558 1345505 D identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase 1344558..1345505 Persephonella marina EX-H1 7674344 YP_002731196.1 CDS hfq_2 NC_012440.1 1345523 1345762 D identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone Hfq 1345523..1345762 Persephonella marina EX-H1 7674518 YP_002731197.1 CDS PERMA_1429 NC_012440.1 1345861 1346895 D identified by match to protein family HMM PF00034; match to protein family HMM PF03150; cytochrome c551 peroxidase (cytochrome cperoxidase) (CCP) 1345861..1346895 Persephonella marina EX-H1 7675411 YP_002731198.1 CDS PERMA_1430 NC_012440.1 1346972 1347412 D identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1346972..1347412 Persephonella marina EX-H1 7675043 YP_002731199.1 CDS PERMA_1431 NC_012440.1 1347436 1347675 R hypothetical protein complement(1347436..1347675) Persephonella marina EX-H1 7675634 YP_002731200.1 CDS rpsP NC_012440.1 1347711 1347956 R identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; ribosomal protein S16 complement(1347711..1347956) Persephonella marina EX-H1 7676185 YP_002731201.1 CDS ffh NC_012440.1 1347977 1349305 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein complement(1347977..1349305) Persephonella marina EX-H1 7674999 YP_002731202.1 CDS PERMA_1434 NC_012440.1 1349551 1351104 D identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM PF08479; outer membrane protein, OMP85 family 1349551..1351104 Persephonella marina EX-H1 7675326 YP_002731203.1 CDS PERMA_1435 NC_012440.1 1351118 1351837 D identified by match to protein family HMM PF07277; SapC family protein 1351118..1351837 Persephonella marina EX-H1 7675228 YP_002731204.1 CDS PERMA_1436 NC_012440.1 1351868 1369297 D identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901; hemagglutination activity domain protein 1351868..1369297 Persephonella marina EX-H1 7674327 YP_002731205.1 CDS PERMA_1437 NC_012440.1 1369377 1370663 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; processing protease 1369377..1370663 Persephonella marina EX-H1 7675781 YP_002731206.1 CDS speE NC_012440.1 1370674 1371507 D identified by match to protein family HMM PF01564; match to protein family HMM TIGR00417; spermidine synthase 1370674..1371507 Persephonella marina EX-H1 7674262 YP_002731207.1 CDS PERMA_1439 NC_012440.1 1371522 1372598 D identified by match to protein family HMM PF01861; hypothetical protein 1371522..1372598 Persephonella marina EX-H1 7675466 YP_002731208.1 CDS PERMA_1440 NC_012440.1 1372764 1373972 D ATPase AAA 1372764..1373972 Persephonella marina EX-H1 7674353 YP_002731209.1 CDS acnB NC_012440.1 1374065 1376656 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1374065..1376656 Persephonella marina EX-H1 7675087 YP_002731210.1 CDS PERMA_1442 NC_012440.1 1376736 1377950 D identified by Glimmer3; hypothetical protein 1376736..1377950 Persephonella marina EX-H1 7675982 YP_002731211.1 CDS PERMA_1443 NC_012440.1 1378028 1378759 D identified by match to protein family HMM PF00194; carbonic anhydrase (Carbonate dehydratase) 1378028..1378759 Persephonella marina EX-H1 7675678 YP_002731212.1 CDS PERMA_1444 NC_012440.1 1378888 1382085 D identified by match to protein family HMM PF01578; cytochrome c biogenesis protein, CcmF/CycK/CcsA family 1378888..1382085 Persephonella marina EX-H1 7674433 YP_002731213.1 CDS PERMA_1445 NC_012440.1 1382342 1383067 D cytochrome c family protein 1382342..1383067 Persephonella marina EX-H1 7675871 YP_002731214.1 CDS PERMA_1446 NC_012440.1 1383113 1383439 R cytochrome c552 complement(1383113..1383439) Persephonella marina EX-H1 7674644 YP_002731215.1 CDS PERMA_1447 NC_012440.1 1383436 1383939 R hypothetical protein complement(1383436..1383939) Persephonella marina EX-H1 7675484 YP_002731216.1 CDS PERMA_1448 NC_012440.1 1383923 1385989 R cytochrome c family protein complement(1383923..1385989) Persephonella marina EX-H1 7675263 YP_002731217.1 CDS PERMA_1449 NC_012440.1 1385992 1386978 R identified by match to protein family HMM PF01436; match to protein family HMM PF08450; NHL repeat containing protein complement(1385992..1386978) Persephonella marina EX-H1 7675754 YP_002731218.1 CDS PERMA_1450 NC_012440.1 1386990 1389584 R identified by Glimmer3; hypothetical protein complement(1386990..1389584) Persephonella marina EX-H1 7674878 YP_002731219.1 CDS PERMA_1451 NC_012440.1 1389595 1390572 R identified by match to protein family HMM PF00639; ppic-type ppiase domain protein complement(1389595..1390572) Persephonella marina EX-H1 7674698 YP_002731220.1 CDS PERMA_1452 NC_012440.1 1390572 1391579 R identified by match to protein family HMM PF01436; NHL repeat domain protein complement(1390572..1391579) Persephonella marina EX-H1 7674415 YP_002731221.1 CDS PERMA_1453 NC_012440.1 1391569 1392156 R cytochrome c family protein complement(1391569..1392156) Persephonella marina EX-H1 7675895 YP_002731222.1 CDS PERMA_1454 NC_012440.1 1392165 1393298 R identified by match to protein family HMM PF01436; NHL repeat protein complement(1392165..1393298) Persephonella marina EX-H1 7674613 YP_002731223.1 CDS PERMA_1455 NC_012440.1 1393283 1394038 R cytochrome c family protein complement(1393283..1394038) Persephonella marina EX-H1 7674511 YP_002731224.1 CDS PERMA_1456 NC_012440.1 1394329 1395492 D identified by match to protein family HMM PF09699; match to protein family HMM TIGR01905; cytochrome c family protein 1394329..1395492 Persephonella marina EX-H1 7674703 YP_002731225.1 CDS PERMA_1457 NC_012440.1 1395542 1396282 D identified by match to protein family HMM PF03264; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 1395542..1396282 Persephonella marina EX-H1 7675667 YP_002731226.1 CDS PERMA_1458 NC_012440.1 1396294 1397898 D identified by match to protein family HMM PF09699; match to protein family HMM TIGR01905; cytochrome c family protein 1396294..1397898 Persephonella marina EX-H1 7675091 YP_002731227.1 CDS PERMA_1459 NC_012440.1 1397918 1399030 D identified by match to protein family HMM PF09699; match to protein family HMM TIGR01905; cytochrome C family protein 1397918..1399030 Persephonella marina EX-H1 7674224 YP_002731228.1 CDS PERMA_1460 NC_012440.1 1399047 1400027 D identified by match to protein family HMM PF09699; match to protein family HMM TIGR01905; cytochrome C family protein 1399047..1400027 Persephonella marina EX-H1 7675008 YP_002731229.1 CDS PERMA_1461 NC_012440.1 1400226 1401650 D identified by match to protein family HMM PF07992; sulfide-quinone reductase 1400226..1401650 Persephonella marina EX-H1 7675859 YP_002731230.1 CDS PERMA_1462 NC_012440.1 1401672 1401791 D identified by Glimmer3; hypothetical protein 1401672..1401791 Persephonella marina EX-H1 7675730 YP_002731231.1 CDS clpS NC_012440.1 1401819 1402091 R identified by match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS complement(1401819..1402091) Persephonella marina EX-H1 7675746 YP_002731232.1 CDS nadD NC_012440.1 1402096 1402719 R identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate-nucleotide adenylyltransferase complement(1402096..1402719) Persephonella marina EX-H1 7675080 YP_002731233.1 CDS PERMA_1465 NC_012440.1 1402724 1404133 R identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; protease do complement(1402724..1404133) Persephonella marina EX-H1 7676170 YP_002731234.1 CDS PERMA_1466 NC_012440.1 1404203 1404982 D hypothetical protein 1404203..1404982 Persephonella marina EX-H1 7674477 YP_002731235.1 CDS PERMA_1467 NC_012440.1 1404979 1405830 D identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475; 4-hydroxybenzoate polyprenyltransferase 1404979..1405830 Persephonella marina EX-H1 7675849 YP_002731236.1 CDS fabZ NC_012440.1 1405879 1406334 D identified by match to protein family HMM PF07977; match to protein family HMM TIGR01750; 3-hydroxyacyl-ACP dehydratase 1405879..1406334 Persephonella marina EX-H1 7674366 YP_002731237.1 CDS radC NC_012440.1 1406335 1407024 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(1406335..1407024) Persephonella marina EX-H1 7674896 YP_002731238.1 CDS PERMA_1471 NC_012440.1 1407096 1407662 D identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 1407096..1407662 Persephonella marina EX-H1 7674848 YP_002731239.1 CDS PERMA_1470 NC_012440.1 1407659 1409233 R identified by match to protein family HMM PF02538; 5-oxoprolinase (5-oxo-L-prolinase) (Pyroglutamase) (5-OPase) complement(1407659..1409233) Persephonella marina EX-H1 7674197 YP_002731240.1 CDS PERMA_1472 NC_012440.1 1409220 1411193 R identified by match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoin utilization protein A (ORF2) complement(1409220..1411193) Persephonella marina EX-H1 7675898 YP_002731241.1 CDS PERMA_1473 NC_012440.1 1411199 1411681 R hypothetical protein complement(1411199..1411681) Persephonella marina EX-H1 7674225 YP_002731242.1 CDS cysS NC_012440.1 1411770 1413233 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1411770..1413233 Persephonella marina EX-H1 7675063 YP_002731243.1 CDS PERMA_1475 NC_012440.1 1413235 1413906 D identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase, UbiE/COQ5 family 1413235..1413906 Persephonella marina EX-H1 7674709 YP_002731244.1 CDS PERMA_1476 NC_012440.1 1413957 1414952 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate; 3-dehydroquinate synthase 1413957..1414952 Persephonella marina EX-H1 7675807 YP_002731245.1 CDS PERMA_1477 NC_012440.1 1414954 1416498 D identified by match to protein family HMM PF02470; mce related protein 1414954..1416498 Persephonella marina EX-H1 7676153 YP_002731246.1 CDS PERMA_1478 NC_012440.1 1416515 1417198 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcriptional regulator 1416515..1417198 Persephonella marina EX-H1 7675600 YP_002731247.1 CDS PERMA_1479 NC_012440.1 1417316 1418689 D identified by match to protein family HMM PF02321; outer membrane efflux protein 1417316..1418689 Persephonella marina EX-H1 7675303 YP_002731248.1 CDS PERMA_1480 NC_012440.1 1418689 1419855 D identified by match to protein family HMM TIGR01730; acriflavin resistance protein AcrE 1418689..1419855 Persephonella marina EX-H1 7675238 YP_002731249.1 CDS PERMA_1481 NC_012440.1 1419873 1423130 D identified by match to protein family HMM PF00873; cation efflux system 1419873..1423130 Persephonella marina EX-H1 7674676 YP_002731250.1 CDS PERMA_1482 NC_012440.1 1423164 1424162 R identified by match to protein family HMM PF01210; match to protein family HMM PF03721; match to protein family HMM PF03807; match to protein family HMM PF07479; glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependentdihydroxyacetone-phosphate reductase) complement(1423164..1424162) Persephonella marina EX-H1 7675443 YP_002731251.1 CDS PERMA_1483 NC_012440.1 1424217 1425011 D identified by Glimmer3; hypothetical protein 1424217..1425011 Persephonella marina EX-H1 7674553 YP_002731252.1 CDS PERMA_1484 NC_012440.1 1425011 1426213 D identified by match to protein family HMM PF02687; ABC transporter permease 1425011..1426213 Persephonella marina EX-H1 7675633 YP_002731253.1 CDS PERMA_1485 NC_012440.1 1426216 1427439 D identified by match to protein family HMM PF02687; macrolide ABC transporter ATP-binding protein/permease 1426216..1427439 Persephonella marina EX-H1 7676042 YP_002731254.1 CDS PERMA_1487 NC_012440.1 1427498 1429150 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; Methyl-accepting chemotaxis protein signaling domain protein 1427498..1429150 Persephonella marina EX-H1 7675549 YP_002731255.1 CDS gatA NC_012440.1 1429128 1430585 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1429128..1430585) Persephonella marina EX-H1 7675293 YP_002731256.1 CDS PERMA_1488 NC_012440.1 1430597 1431040 R transcriptional regulator, TraR/DksA family complement(1430597..1431040) Persephonella marina EX-H1 7675029 YP_002731257.1 CDS purT NC_012440.1 1431174 1432352 D identified by match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM TIGR01142; phosphoribosylglycinamide formyltransferase 2 1431174..1432352 Persephonella marina EX-H1 7675207 YP_002731258.1 CDS PERMA_1490 NC_012440.1 1432361 1432828 D identified by Glimmer3; hypothetical protein 1432361..1432828 Persephonella marina EX-H1 7674423 YP_002731259.1 CDS PERMA_1491 NC_012440.1 1432822 1434150 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; transcriptional regulatory protein ZraR 1432822..1434150 Persephonella marina EX-H1 7674288 YP_002731260.1 CDS PERMA_1492 NC_012440.1 1434307 1435002 D lipoprotein 1434307..1435002 Persephonella marina EX-H1 7674545 YP_002731261.1 CDS PERMA_1493 NC_012440.1 1435035 1436354 D calcium-binding protein 1435035..1436354 Persephonella marina EX-H1 7675475 YP_002731262.1 CDS PERMA_1494 NC_012440.1 1436412 1437476 D identified by match to protein family HMM PF00072; match to protein family HMM PF01966; response regulator receiver modulated metal dependent phosphohydrolase 1436412..1437476 Persephonella marina EX-H1 7674633 YP_002731263.1 CDS PERMA_1495 NC_012440.1 1437473 1438474 D hypothetical protein 1437473..1438474 Persephonella marina EX-H1 7674393 YP_002731264.1 CDS PERMA_1496 NC_012440.1 1438482 1438907 D hypothetical protein 1438482..1438907 Persephonella marina EX-H1 7674332 YP_002731265.1 CDS PERMA_1497 NC_012440.1 1438904 1439248 D identified by match to protein family HMM PF00072; cell division response regulator DivK 1438904..1439248 Persephonella marina EX-H1 7675812 YP_002731266.1 CDS PERMA_1498 NC_012440.1 1439245 1441245 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; histidine kinase 1439245..1441245 Persephonella marina EX-H1 7674497 YP_002731267.1 CDS PERMA_1499 NC_012440.1 1441249 1441365 R identified by Glimmer3; hypothetical protein complement(1441249..1441365) Persephonella marina EX-H1 7675930 YP_002731268.1 CDS purH NC_012440.1 1441483 1443030 R identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1441483..1443030) Persephonella marina EX-H1 7675954 YP_002731269.1 CDS PERMA_1501 NC_012440.1 1443139 1444110 D identified by match to protein family HMM PF01743; poly A polymerase 1443139..1444110 Persephonella marina EX-H1 7674900 YP_002731270.1 CDS PERMA_1502 NC_012440.1 1444617 1444748 D poly A polymerase 1444617..1444748 Persephonella marina EX-H1 7674379 YP_002731271.1 CDS mnmA NC_012440.1 1444749 1445810 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1444749..1445810) Persephonella marina EX-H1 7676095 YP_002731272.1 CDS pilC NC_012440.1 1445811 1447013 R identified by match to protein family HMM PF00482; type IV pilus biogenesis protein PilC complement(1445811..1447013) Persephonella marina EX-H1 7674227 YP_002731273.1 CDS PERMA_1505 NC_012440.1 1447027 1448106 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein complement(1447027..1448106) Persephonella marina EX-H1 7675480 YP_002731274.1 CDS PERMA_1506 NC_012440.1 1448124 1449857 R identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein TapB complement(1448124..1449857) Persephonella marina EX-H1 7674607 YP_002731275.1 CDS accC_1 NC_012440.1 1449959 1451326 D identified by match to protein family HMM PF00289; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase subunit 1449959..1451326 Persephonella marina EX-H1 7675644 YP_002731276.1 CDS PERMA_1508 NC_012440.1 1451323 1451961 D identified by match to protein family HMM PF00753; beta-lactamase domain protein 1451323..1451961 Persephonella marina EX-H1 7674382 YP_002731277.1 CDS PERMA_1509 NC_012440.1 1451955 1452812 D identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587; endonuclease 4 (Endonuclease IV)(Endodeoxyribonuclease IV) 1451955..1452812 Persephonella marina EX-H1 7676075 YP_002731278.1 CDS PERMA_1511 NC_012440.1 1452913 1453875 D identified by match to protein family HMM PF00348; octaprenyl-diphosphate synthase 1452913..1453875 Persephonella marina EX-H1 7675636 YP_002731279.1 CDS panD NC_012440.1 1453875 1454297 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 1453875..1454297 Persephonella marina EX-H1 7675984 YP_002731280.1 CDS PERMA_1513 NC_012440.1 1454300 1455475 D identified by match to protein family HMM PF01464; match to protein family HMM PF01476; glycoside hydrolase family 23 1454300..1455475 Persephonella marina EX-H1 7675122 YP_002731281.1 CDS ispG NC_012440.1 1455476 1456534 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1455476..1456534 Persephonella marina EX-H1 7674890 YP_002731282.1 CDS PERMA_1515 NC_012440.1 1456535 1456978 D identified by Glimmer3; hypothetical protein 1456535..1456978 Persephonella marina EX-H1 7675963 YP_002731283.1 CDS PERMA_1516 NC_012440.1 1456965 1457288 D identified by Glimmer3; hypothetical protein 1456965..1457288 Persephonella marina EX-H1 7674204 YP_002731284.1 CDS argB NC_012440.1 1457289 1458188 D identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase 1457289..1458188 Persephonella marina EX-H1 7676106 YP_002731285.1 CDS PERMA_1518 NC_012440.1 1458189 1460150 R identified by match to protein family HMM TIGR00376; DNA helicase complement(1458189..1460150) Persephonella marina EX-H1 7674847 YP_002731286.1 CDS PERMA_1519 NC_012440.1 1460160 1461053 R hypothetical protein complement(1460160..1461053) Persephonella marina EX-H1 7674700 YP_002731287.1 CDS PERMA_1520 NC_012440.1 1461133 1461318 D identified by Glimmer3; hypothetical protein 1461133..1461318 Persephonella marina EX-H1 7674202 YP_002731288.1 CDS secA NC_012440.1 1461321 1464134 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(1461321..1464134) Persephonella marina EX-H1 7675197 YP_002731289.1 CDS lspA NC_012440.1 1464210 1464707 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1464210..1464707) Persephonella marina EX-H1 7674367 YP_002731290.1 CDS PERMA_1523 NC_012440.1 1464709 1465137 R identified by match to protein family HMM PF01258; DnaK suppressor protein complement(1464709..1465137) Persephonella marina EX-H1 7675244 YP_002731291.1 CDS PERMA_1524 NC_012440.1 1465279 1465560 D identified by Glimmer3; hypothetical protein 1465279..1465560 Persephonella marina EX-H1 7675550 YP_002731292.1 CDS PERMA_1525 NC_012440.1 1465561 1465755 D hypothetical protein 1465561..1465755 Persephonella marina EX-H1 7675093 YP_002731293.1 CDS PERMA_1526 NC_012440.1 1465761 1467038 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; general substrate transporter 1465761..1467038 Persephonella marina EX-H1 7675740 YP_002731294.1 CDS PERMA_1527 NC_012440.1 1467038 1467403 D identified by Glimmer3; hypothetical protein 1467038..1467403 Persephonella marina EX-H1 7676101 YP_002731295.1 CDS PERMA_1528 NC_012440.1 1467470 1468597 D identified by match to protein family HMM PF00285; match to protein family HMM TIGR01800; citrate synthase 2 (Citrate synthase II) 1467470..1468597 Persephonella marina EX-H1 7675152 YP_002731296.1 CDS PERMA_1529 NC_012440.1 1468782 1470845 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1468782..1470845 Persephonella marina EX-H1 7674405 YP_002731297.1 CDS PERMA_1530 NC_012440.1 1470922 1471695 D identified by match to protein family HMM PF02621; hypothetical protein 1470922..1471695 Persephonella marina EX-H1 7675270 YP_002731298.1 CDS PERMA_1531 NC_012440.1 1471698 1472303 D identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase 1471698..1472303 Persephonella marina EX-H1 7674318 YP_002731299.1 CDS PERMA_1532 NC_012440.1 1472288 1473133 D identified by match to protein family HMM PF05430; hypothetical protein 1472288..1473133 Persephonella marina EX-H1 7675214 YP_002731300.1 CDS PERMA_1533 NC_012440.1 1473145 1473327 D identified by Glimmer3; hypothetical protein 1473145..1473327 Persephonella marina EX-H1 7674858 YP_002731301.1 CDS PERMA_1534 NC_012440.1 1473336 1474565 R identified by match to protein family HMM PF00136; DNA polymerase 2 (DNA polymerase II) (DNA polymerase B2) complement(1473336..1474565) Persephonella marina EX-H1 7674689 YP_002731302.1 CDS PERMA_1535 NC_012440.1 1474871 1475509 R identified by Glimmer3; hypothetical protein complement(1474871..1475509) Persephonella marina EX-H1 7675139 YP_002731303.1 CDS PERMA_1536 NC_012440.1 1475481 1475738 R hypothetical protein complement(1475481..1475738) Persephonella marina EX-H1 7674745 YP_002731304.1 CDS PERMA_1537 NC_012440.1 1475747 1476208 R hypothetical protein complement(1475747..1476208) Persephonella marina EX-H1 7674233 YP_002731305.1 CDS lexA NC_012440.1 1476211 1476831 R identified by match to protein family HMM PF00717; match to protein family HMM PF01726; match to protein family HMM TIGR00498; repressor LexA complement(1476211..1476831) Persephonella marina EX-H1 7675778 YP_002731306.1 CDS dnaN NC_012440.1 1476950 1478044 D identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III, betsubunit A 1476950..1478044 Persephonella marina EX-H1 7674523 YP_002731307.1 CDS gyrB NC_012440.1 1478093 1480510 D identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase, B subunit 1478093..1480510 Persephonella marina EX-H1 7674304 YP_002731308.1 CDS PERMA_1541 NC_012440.1 1480523 1480879 R identified by match to protein family HMM PF00034; cytochrome c complement(1480523..1480879) Persephonella marina EX-H1 7675449 YP_002731309.1 CDS PERMA_1542 NC_012440.1 1481043 1483559 D identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; signal transduction response regulator 1481043..1483559 Persephonella marina EX-H1 7674784 YP_002731310.1 CDS PERMA_1543 NC_012440.1 1486608 1487774 R identified by match to protein family HMM TIGR01730; efflux transporter, RND family, MFP subunit complement(1486608..1487774) Persephonella marina EX-H1 7674527 YP_002731311.1 CDS PERMA_1544 NC_012440.1 1487776 1489023 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(1487776..1489023) Persephonella marina EX-H1 7676050 YP_002731312.1 CDS PERMA_1545 NC_012440.1 1489255 1490409 R identified by match to protein family HMM PF00425; para-aminobenzoate synthase component 1 (Para-aminobenzoate synthase component I) (ADC synthase) complement(1489255..1490409) Persephonella marina EX-H1 7675845 YP_002731313.1 CDS PERMA_1546 NC_012440.1 1490476 1491246 D identified by Glimmer3; hypothetical protein 1490476..1491246 Persephonella marina EX-H1 7676181 YP_002731314.1 CDS PERMA_1547 NC_012440.1 1491489 1491809 D identified by Glimmer3; hypothetical protein 1491489..1491809 Persephonella marina EX-H1 7675178 YP_002731315.1 CDS PERMA_1548 NC_012440.1 1491812 1493848 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensor histidine kinase/response regulator 1491812..1493848 Persephonella marina EX-H1 7676180 YP_002731316.1 CDS PERMA_1549 NC_012440.1 1493848 1495242 D identified by match to protein family HMM PF00072; match to protein family HMM PF00158; transcriptional regulatory protein ZraR 1493848..1495242 Persephonella marina EX-H1 7674789 YP_002731317.1 CDS PERMA_1550 NC_012440.1 1495291 1497624 D identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069; MutS2 protein 1495291..1497624 Persephonella marina EX-H1 7675357 YP_002731318.1 CDS PERMA_1551 NC_012440.1 1497635 1498144 D identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; intracellular protease 1 (Intracellular protease I) 1497635..1498144 Persephonella marina EX-H1 7674672 YP_002731319.1 CDS PERMA_1552 NC_012440.1 1498144 1499037 D identified by match to protein family HMM PF00480; xylose repressor 1498144..1499037 Persephonella marina EX-H1 7676113 YP_002731320.1 CDS PERMA_1554 NC_012440.1 1499024 1499449 D identified by Glimmer3; hypothetical protein 1499024..1499449 Persephonella marina EX-H1 7674829 YP_002731321.1 CDS secF NC_012440.1 1499440 1500381 R identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966; protein-export membrane protein SecF complement(1499440..1500381) Persephonella marina EX-H1 7674801 YP_002731322.1 CDS secD NC_012440.1 1500391 1501929 R identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129; protein-export membrane protein SecD complement(1500391..1501929) Persephonella marina EX-H1 7675800 YP_002731323.1 CDS PERMA_1556 NC_012440.1 1502063 1504447 D identified by Glimmer3; hypothetical protein 1502063..1504447 Persephonella marina EX-H1 7674902 YP_002731324.1 CDS pgi NC_012440.1 1504493 1505842 R identified by match to protein family HMM PF00342; glucose-6-phosphate isomerase complement(1504493..1505842) Persephonella marina EX-H1 7674669 YP_002731325.1 CDS serS NC_012440.1 1505851 1507110 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(1505851..1507110) Persephonella marina EX-H1 7675981 YP_002731326.1 CDS PERMA_1559 NC_012440.1 1507120 1508124 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(1507120..1508124) Persephonella marina EX-H1 7674722 YP_002731327.1 CDS PERMA_1561 NC_012440.1 1508190 1512065 D identified by match to protein family HMM PF04357; hypothetical protein 1508190..1512065 Persephonella marina EX-H1 7675036 YP_002731328.1 CDS PERMA_1560 NC_012440.1 1512043 1512645 R identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase) complement(1512043..1512645) Persephonella marina EX-H1 7675751 YP_002731329.1 CDS PERMA_1562 NC_012440.1 1512789 1516442 D identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; DNA gyrase subunit A 1512789..1516442 Persephonella marina EX-H1 7676061 YP_002731330.1 CDS PERMA_1563 NC_012440.1 1516432 1516641 D identified by Glimmer3; hypothetical protein 1516432..1516641 Persephonella marina EX-H1 7675758 YP_002731331.1 CDS PERMA_1564 NC_012440.1 1516642 1516956 R identified by Glimmer3; hypothetical protein complement(1516642..1516956) Persephonella marina EX-H1 7675070 YP_002731332.1 CDS PERMA_1565 NC_012440.1 1516985 1517491 R hypothetical protein complement(1516985..1517491) Persephonella marina EX-H1 7674313 YP_002731333.1 CDS PERMA_1566 NC_012440.1 1517475 1518395 R identified by match to protein family HMM PF00994; match to protein family HMM PF01967; match to protein family HMM TIGR00177; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis bifunctional protein: molybdenum cofactor biosynthesis protein C/molybdenum cofactor biosynthesis protein B complement(1517475..1518395) Persephonella marina EX-H1 7675217 YP_002731334.1 CDS hpt NC_012440.1 1518433 1518960 R identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase complement(1518433..1518960) Persephonella marina EX-H1 7674766 YP_002731335.1 CDS rimI NC_012440.1 1518989 1519420 R identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase complement(1518989..1519420) Persephonella marina EX-H1 7674853 YP_002731336.1 CDS PERMA_1569 NC_012440.1 1519420 1520700 R identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein ribBA complement(1519420..1520700) Persephonella marina EX-H1 7674692 YP_002731337.1 CDS PERMA_1570 NC_012440.1 1520706 1520933 R identified by Glimmer3; hypothetical protein complement(1520706..1520933) Persephonella marina EX-H1 7674190 YP_002731338.1 CDS PERMA_1571 NC_012440.1 1521092 1522246 D hypothetical protein 1521092..1522246 Persephonella marina EX-H1 7675359 YP_002731339.1 CDS pstS NC_012440.1 1522265 1523272 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein 1522265..1523272 Persephonella marina EX-H1 7675912 YP_002731340.1 CDS pstC NC_012440.1 1523362 1524303 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 1523362..1524303 Persephonella marina EX-H1 7676135 YP_002731341.1 CDS pstA NC_012440.1 1524309 1525151 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 1524309..1525151 Persephonella marina EX-H1 7675579 YP_002731342.1 CDS pstB NC_012440.1 1525151 1525918 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972; phosphate ABC transporter ATP-binding protein 1525151..1525918 Persephonella marina EX-H1 7674788 YP_002731343.1 CDS phoU NC_012440.1 1525934 1526596 D identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU 1525934..1526596 Persephonella marina EX-H1 7674886 YP_002731344.1 CDS PERMA_1577 NC_012440.1 1526589 1527608 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; phosphate regulon sensor protein PhoR 1526589..1527608 Persephonella marina EX-H1 7675788 YP_002731345.1 CDS PERMA_1578 NC_012440.1 1527610 1528419 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 1527610..1528419 Persephonella marina EX-H1 7674823 YP_002731346.1 CDS PERMA_1579 NC_012440.1 1528394 1529692 D identified by match to protein family HMM PF05161; hydroxypyruvate reductase 1528394..1529692 Persephonella marina EX-H1 7674565 YP_002731347.1 CDS PERMA_1580 NC_012440.1 1529694 1530947 D identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family 1529694..1530947 Persephonella marina EX-H1 7675373 YP_002731348.1 CDS PERMA_1582 NC_012440.1 1530961 1532172 D glucosyl-3-phosphoglycerate synthase 1530961..1532172 Persephonella marina EX-H1 7675426 YP_002731349.1 CDS cysM NC_012440.1 1532169 1533116 R identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01138; cysteine synthase B complement(1532169..1533116) Persephonella marina EX-H1 7675607 YP_002731350.1 CDS ruvA NC_012440.1 1533158 1533697 R identified by match to protein family HMM PF01330; match to protein family HMM PF07499; match to protein family HMM TIGR00084; holliday junction DNA helicase RuvA complement(1533158..1533697) Persephonella marina EX-H1 7675843 YP_002731351.1 CDS PERMA_1584 NC_012440.1 1533771 1535204 D identified by match to protein family HMM PF00171; match to protein family HMM PF05893; succinate-semialdehyde dehydrogenase [NADP+] (ssdh) 1533771..1535204 Persephonella marina EX-H1 7674547 YP_002731352.1 CDS PERMA_1585 NC_012440.1 1535337 1535675 D identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 1535337..1535675 Persephonella marina EX-H1 7675563 YP_002731353.1 CDS glnA NC_012440.1 1535707 1537134 D identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 1535707..1537134 Persephonella marina EX-H1 7676000 YP_002731354.1 CDS PERMA_1587 NC_012440.1 1537225 1538286 D identified by match to protein family HMM PF07238; type IV pilus assembly protein PilZ 1537225..1538286 Persephonella marina EX-H1 7675804 YP_002731355.1 CDS PERMA_1588 NC_012440.1 1538376 1539335 D lipoprotein 1538376..1539335 Persephonella marina EX-H1 7674661 YP_002731356.1 CDS PERMA_1589 NC_012440.1 1539341 1541953 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; slei family protein 1539341..1541953 Persephonella marina EX-H1 7675272 YP_002731357.1 CDS PERMA_1590 NC_012440.1 1541998 1542663 D identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein 1541998..1542663 Persephonella marina EX-H1 7674335 YP_002731358.1 CDS PERMA_1591 NC_012440.1 1542647 1543249 D hypothetical protein 1542647..1543249 Persephonella marina EX-H1 7674717 YP_002731359.1 CDS coaE NC_012440.1 1543251 1543853 D identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase 1543251..1543853 Persephonella marina EX-H1 7674251 YP_002731360.1 CDS PERMA_1593 NC_012440.1 1543850 1544113 D identified by Glimmer3; hypothetical protein 1543850..1544113 Persephonella marina EX-H1 7674852 YP_002731361.1 CDS PERMA_1595 NC_012440.1 1544085 1544468 D lipoprotein 1544085..1544468 Persephonella marina EX-H1 7675679 YP_002731362.1 CDS PERMA_1594 NC_012440.1 1544461 1545612 R identified by match to protein family HMM PF07690; transporter, major facilitator family complement(1544461..1545612) Persephonella marina EX-H1 7674575 YP_002731363.1 CDS PERMA_1596 NC_012440.1 1545609 1546151 R identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein complement(1545609..1546151) Persephonella marina EX-H1 7675530 YP_002731364.1 CDS PERMA_1597 NC_012440.1 1546394 1546666 R identified by match to protein family HMM PF00216; histone family protein DNA-binding protein complement(1546394..1546666) Persephonella marina EX-H1 7674563 YP_002731365.1 CDS PERMA_1598 NC_012440.1 1546848 1547072 R hypothetical protein complement(1546848..1547072) Persephonella marina EX-H1 7675911 YP_002731366.1 CDS PERMA_1599 NC_012440.1 1547096 1549777 R identified by match to protein family HMM PF00005; match to protein family HMM PF02463; DNA double-strand break repair protein Rad50 complement(1547096..1549777) Persephonella marina EX-H1 7674424 YP_002731367.1 CDS PERMA_1600 NC_012440.1 1549774 1550088 R identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106; hypothetical protein complement(1549774..1550088) Persephonella marina EX-H1 7674679 YP_002731368.1 CDS rumA NC_012440.1 1550161 1551426 D identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase 1550161..1551426 Persephonella marina EX-H1 7674909 YP_002731369.1 CDS PERMA_1602 NC_012440.1 1551526 1552479 D identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport ATP-binding protein AppF 1551526..1552479 Persephonella marina EX-H1 7674289 YP_002731370.1 CDS PERMA_1603 NC_012440.1 1552472 1553761 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 1552472..1553761 Persephonella marina EX-H1 7675329 YP_002731371.1 CDS PERMA_1605 NC_012440.1 1553754 1555040 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hemolysin 1553754..1555040 Persephonella marina EX-H1 7675025 YP_002731372.1 CDS PERMA_1606 NC_012440.1 1555137 1556324 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(1555137..1556324) Persephonella marina EX-H1 7674919 YP_002731373.1 CDS gidB NC_012440.1 1556371 1556997 R identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; 16S rRNA methyltransferase GidB complement(1556371..1556997) Persephonella marina EX-H1 7674474 YP_002731374.1 CDS PERMA_1608 NC_012440.1 1556994 1557662 R Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 7-oxoG) from DNA. Also nicks DNA at apurinic/apyrimidinic sites; N-glycosylase/DNA lyase complement(1556994..1557662) Persephonella marina EX-H1 7676178 YP_002731375.1 CDS PERMA_1609 NC_012440.1 1557659 1558384 R identified by Glimmer3; hypothetical protein complement(1557659..1558384) Persephonella marina EX-H1 7675724 YP_002731376.1 CDS PERMA_1610 NC_012440.1 1558440 1559681 R identified by match to protein family HMM PF02677; hypothetical protein complement(1558440..1559681) Persephonella marina EX-H1 7675086 YP_002731377.1 CDS PERMA_1611 NC_012440.1 1559671 1560258 R identified by match to protein family HMM PF01402; HNH endonuclease complement(1559671..1560258) Persephonella marina EX-H1 7674291 YP_002731378.1 CDS corA NC_012440.1 1560599 1561552 D identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383; magnesium and cobalt transport protein CorA 1560599..1561552 Persephonella marina EX-H1 7675632 YP_002731379.1 CDS PERMA_1613 NC_012440.1 1561601 1561960 D identified by Glimmer3; hypothetical protein 1561601..1561960 Persephonella marina EX-H1 7676147 YP_002731380.1 CDS flgK NC_012440.1 1562015 1563472 D identified by match to protein family HMM PF06429; match to protein family HMM TIGR02492; flagellar hook-associated protein FlgK 1562015..1563472 Persephonella marina EX-H1 7674874 YP_002731381.1 CDS flgL NC_012440.1 1563538 1564503 D identified by match to protein family HMM TIGR02550; flagellar hook-associated protein 3 1563538..1564503 Persephonella marina EX-H1 7674733 YP_002731382.1 CDS PERMA_1616 NC_012440.1 1564504 1564755 R identified by Glimmer3; hypothetical protein complement(1564504..1564755) Persephonella marina EX-H1 7675858 YP_002731383.1 CDS fliS NC_012440.1 1564728 1565096 R identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208; flagellar protein FliS complement(1564728..1565096) Persephonella marina EX-H1 7674814 YP_002731384.1 CDS PERMA_1618 NC_012440.1 1565110 1566438 R identified by match to protein family HMM PF02465; match to protein family HMM PF07195; flagellar hook-associated protein 2 FliD complement(1565110..1566438) Persephonella marina EX-H1 7674560 YP_002731385.1 CDS PERMA_1619 NC_012440.1 1566443 1566805 R identified by match to protein family HMM PF03646; flagellar protein FlaG complement(1566443..1566805) Persephonella marina EX-H1 7674417 YP_002731386.1 CDS PERMA_1620 NC_012440.1 1566866 1567732 R identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellar filament 34.5 kDa core protein (Class B) complement(1566866..1567732) Persephonella marina EX-H1 7674411 YP_002731387.1 CDS PERMA_1621 NC_012440.1 1567814 1569730 R identified by match to protein family HMM PF01973; hypothetical protein complement(1567814..1569730) Persephonella marina EX-H1 7675134 YP_002731388.1 CDS PERMA_1622 NC_012440.1 1569720 1570406 R identified by match to protein family HMM PF02348; N-acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) (CMP-sialicacid synthetase) complement(1569720..1570406) Persephonella marina EX-H1 7674588 YP_002731389.1 CDS PERMA_1623 NC_012440.1 1570403 1571467 R identified by match to protein family HMM PF00483; match to protein family HMM PF00571; nucleotidyl transferase complement(1570403..1571467) Persephonella marina EX-H1 7674770 YP_002731390.1 CDS neuC NC_012440.1 1571460 1572632 R identified by match to protein family HMM PF02350; match to protein family HMM TIGR03568; UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing complement(1571460..1572632) Persephonella marina EX-H1 7675887 YP_002731391.1 CDS PERMA_1625 NC_012440.1 1572634 1573053 R identified by match to protein family HMM PF01850; PIN domain protein complement(1572634..1573053) Persephonella marina EX-H1 7675126 YP_002731392.1 CDS PERMA_1626 NC_012440.1 1573043 1573243 R identified by Glimmer3; hypothetical protein complement(1573043..1573243) Persephonella marina EX-H1 7675727 YP_002731393.1 CDS neuB NC_012440.1 1573304 1574311 R identified by match to protein family HMM PF03102; match to protein family HMM PF08666; match to protein family HMM TIGR03569; N-acetylneuraminate synthase complement(1573304..1574311) Persephonella marina EX-H1 7675057 YP_002731394.1 CDS PERMA_1628 NC_012440.1 1574308 1574940 R identified by match to protein family HMM PF00132; match to protein family HMM TIGR03570; transferase hexapeptide repeat protein complement(1574308..1574940) Persephonella marina EX-H1 7674638 YP_002731395.1 CDS PERMA_1629 NC_012440.1 1574937 1576028 R identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; DegT/DnrJ/EryC1/StrS aminotransferase complement(1574937..1576028) Persephonella marina EX-H1 7675450 YP_002731396.1 CDS PERMA_1630 NC_012440.1 1576021 1577019 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase complement(1576021..1577019) Persephonella marina EX-H1 7675018 YP_002731397.1 CDS PERMA_1631 NC_012440.1 1577441 1578496 R identified by match to protein family HMM PF01925; membrane protein complement(1577441..1578496) Persephonella marina EX-H1 7675671 YP_002731398.1 CDS PERMA_1632 NC_012440.1 1578589 1580193 D identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 1578589..1580193 Persephonella marina EX-H1 7675438 YP_002731399.1 CDS PERMA_1633 NC_012440.1 1580199 1580948 D identified by match to protein family HMM PF01063; aminodeoxychorismate lyase (4-amino-4-deoxychorismatelyase) (adc lyase) (adcl) 1580199..1580948 Persephonella marina EX-H1 7674450 YP_002731400.1 CDS PERMA_1634 NC_012440.1 1580967 1582199 D identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657; asparate kinase, monofunctional class 1580967..1582199 Persephonella marina EX-H1 7675802 YP_002731401.1 CDS accC_2 NC_012440.1 1582212 1583648 D identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase subunit 1582212..1583648 Persephonella marina EX-H1 7674365 YP_002731402.1 CDS eno NC_012440.1 1583661 1584947 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1583661..1584947 Persephonella marina EX-H1 7675315 YP_002731403.1 CDS PERMA_1637 NC_012440.1 1584901 1585317 D identified by match to protein family HMM PF04977; septum formation initiator 1584901..1585317 Persephonella marina EX-H1 7674301 YP_002731404.1 CDS PERMA_1639 NC_012440.1 1585269 1585976 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; match to protein family HMM TIGR01662; phosphoglycolate phosphatase (PGPase) (PGP) 1585269..1585976 Persephonella marina EX-H1 7674488 YP_002731405.1 CDS argJ NC_012440.1 1585973 1587133 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein complement(1585973..1587133) Persephonella marina EX-H1 7675479 YP_002731406.1 CDS PERMA_1640 NC_012440.1 1587133 1587606 R identified by Glimmer3; hypothetical protein complement(1587133..1587606) Persephonella marina EX-H1 7675290 YP_002731407.1 CDS PERMA_1641 NC_012440.1 1587617 1589578 R identified by match to protein family HMM PF00037; match to protein family HMM PF00111; NADH dehydrogenase i chain g complement(1587617..1589578) Persephonella marina EX-H1 7676012 YP_002731408.1 CDS PERMA_1642 NC_012440.1 1589656 1590189 R identified by match to protein family HMM PF02620; hypothetical protein complement(1589656..1590189) Persephonella marina EX-H1 7674686 YP_002731409.1 CDS dcd NC_012440.1 1590291 1590833 D identified by match to protein family HMM PF00692; match to protein family HMM TIGR02274; deoxycytidine triphosphate deaminase 1590291..1590833 Persephonella marina EX-H1 7674187 YP_002731410.1 CDS PERMA_1643 NC_012440.1 1590830 1592158 R lipoprotein complement(1590830..1592158) Persephonella marina EX-H1 7676077 YP_002731411.1 CDS PERMA_1645 NC_012440.1 1592179 1592553 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP complement(1592179..1592553) Persephonella marina EX-H1 7674231 YP_002731412.1 CDS hisA NC_012440.1 1592556 1593281 R identified by match to protein family HMM PF00977; match to protein family HMM TIGR00007; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase complement(1592556..1593281) Persephonella marina EX-H1 7675534 YP_002731413.1 CDS PERMA_1647 NC_012440.1 1593291 1594877 R identified by match to protein family HMM PF03109; ubiquinone biosynthesis protein AarF complement(1593291..1594877) Persephonella marina EX-H1 7675684 YP_002731414.1 CDS PERMA_1648 NC_012440.1 1594881 1595966 R identified by match to protein family HMM PF02511; thymidylate synthase ThyX (TS) (TSase) complement(1594881..1595966) Persephonella marina EX-H1 7675243 YP_002731415.1 CDS PERMA_1649 NC_012440.1 1596007 1597269 R identified by match to protein family HMM PF00563; match to protein family HMM PF08668; EAL domain protein complement(1596007..1597269) Persephonella marina EX-H1 7675319 YP_002731416.1 CDS PERMA_1650 NC_012440.1 1597328 1597891 D identified by match to protein family HMM PF01661; appr-1-p processing domain protein 1597328..1597891 Persephonella marina EX-H1 7675005 YP_002731417.1 CDS PERMA_1651 NC_012440.1 1597891 1598682 D identified by Glimmer3; hypothetical protein 1597891..1598682 Persephonella marina EX-H1 7676063 YP_002731418.1 CDS PERMA_1652 NC_012440.1 1598708 1599979 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; processing protease 1598708..1599979 Persephonella marina EX-H1 7676064 YP_002731419.1 CDS PERMA_1653 NC_012440.1 1599980 1601878 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase complement(1599980..1601878) Persephonella marina EX-H1 7676032 YP_002731420.1 CDS PERMA_1654 NC_012440.1 1601872 1602315 R hypothetical protein complement(1601872..1602315) Persephonella marina EX-H1 7674859 YP_002731421.1 CDS PERMA_1655 NC_012440.1 1602315 1604150 R hypothetical protein complement(1602315..1604150) Persephonella marina EX-H1 7675492 YP_002731422.1 CDS PERMA_1656 NC_012440.1 1604186 1604797 R molybdopterin-guanine biosynthesis protein complement(1604186..1604797) Persephonella marina EX-H1 7674826 YP_002731423.1 CDS PERMA_1657 NC_012440.1 1604797 1605945 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(1604797..1605945) Persephonella marina EX-H1 7674510 YP_002731424.1 CDS PERMA_1658 NC_012440.1 1605966 1606400 R identified by match to protein family HMM PF01475; transcriptional regulator complement(1605966..1606400) Persephonella marina EX-H1 7674531 YP_002731425.1 CDS PERMA_1659 NC_012440.1 1606403 1607011 R flavin reductase domain protein, FMN-binding complement(1606403..1607011) Persephonella marina EX-H1 7675416 YP_002731426.1 CDS tatC NC_012440.1 1607060 1607824 R identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; twin arginine-targeting protein translocase TatC complement(1607060..1607824) Persephonella marina EX-H1 7675582 YP_002731427.1 CDS PERMA_1661 NC_012440.1 1607799 1608149 R identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410; twin-arginine translocation system component TatB complement(1607799..1608149) Persephonella marina EX-H1 7675299 YP_002731428.1 CDS PERMA_1662 NC_012440.1 1608191 1610722 R identified by match to protein family HMM PF01103; match to protein family HMM PF07244; outer membrane protein, OMP85 family complement(1608191..1610722) Persephonella marina EX-H1 7675428 YP_002731429.1 CDS PERMA_1663 NC_012440.1 1610726 1612231 R identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase complement(1610726..1612231) Persephonella marina EX-H1 7675810 YP_002731430.1 CDS thiD NC_012440.1 1612299 1613087 D identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 1612299..1613087 Persephonella marina EX-H1 7674359 YP_002731431.1 CDS PERMA_1665 NC_012440.1 1613084 1613755 D phosphoribosyltransferase 1613084..1613755 Persephonella marina EX-H1 7675797 YP_002731432.1 CDS PERMA_1666 NC_012440.1 1613800 1615110 D identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase 1613800..1615110 Persephonella marina EX-H1 7674798 YP_002731433.1 CDS PERMA_1667 NC_012440.1 1615115 1616146 R identified by match to protein family HMM PF01594; PerM protein complement(1615115..1616146) Persephonella marina EX-H1 7674408 YP_002731434.1 CDS speD_1 NC_012440.1 1616192 1616593 R Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase proenzyme complement(1616192..1616593) Persephonella marina EX-H1 7675155 YP_002731435.1 CDS metH NC_012440.1 1616778 1620326 D identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082; methionine synthase 1616778..1620326 Persephonella marina EX-H1 7676133 YP_002731436.1 CDS PERMA_1669 NC_012440.1 1620311 1621036 R identified by match to protein family HMM PF04463; photoreactivation-associated protein complement(1620311..1621036) Persephonella marina EX-H1 7674619 YP_002731437.1 CDS hemH NC_012440.1 1621029 1621964 R identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase complement(1621029..1621964) Persephonella marina EX-H1 7675560 YP_002731438.1 CDS PERMA_1672 NC_012440.1 1622067 1622405 D identified by Glimmer3; hypothetical protein 1622067..1622405 Persephonella marina EX-H1 7675886 YP_002731439.1 CDS PERMA_1673 NC_012440.1 1622414 1624147 R identified by match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937; RNA polymerase sigma factor RpoD (Sigma-70) complement(1622414..1624147) Persephonella marina EX-H1 7675753 YP_002731440.1 CDS dnaG NC_012440.1 1624144 1625790 R identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391; DNA primase complement(1624144..1625790) Persephonella marina EX-H1 7675058 YP_002731441.1 CDS folP NC_012440.1 1625923 1626993 D identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 1625923..1626993 Persephonella marina EX-H1 7675123 YP_002731442.1 CDS PERMA_1676 NC_012440.1 1626986 1627828 D identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 1626986..1627828 Persephonella marina EX-H1 7674756 YP_002731443.1 CDS PERMA_1677 NC_012440.1 1627816 1628199 D hypothetical protein 1627816..1628199 Persephonella marina EX-H1 7674257 YP_002731444.1 CDS thrS NC_012440.1 1628235 1630175 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1628235..1630175 Persephonella marina EX-H1 7676065 YP_002731445.1 CDS PERMA_1679 NC_012440.1 1630181 1630867 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory proteinphoP complement(1630181..1630867) Persephonella marina EX-H1 7675049 YP_002731446.1 CDS proA NC_012440.1 1631259 1632596 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1631259..1632596 Persephonella marina EX-H1 7674934 YP_002731447.1 CDS PERMA_1683 NC_012440.1 1632606 1633277 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcriptional regulator, Crp/Fnr family 1632606..1633277 Persephonella marina EX-H1 7675670 YP_002731448.1 CDS panB NC_012440.1 1633277 1634068 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1633277..1634068 Persephonella marina EX-H1 7674821 YP_002731449.1 CDS PERMA_1686 NC_012440.1 1634061 1634672 D identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 1634061..1634672 Persephonella marina EX-H1 7675059 YP_002731450.1 CDS maeB NC_012440.1 1634658 1635938 R identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme complement(1634658..1635938) Persephonella marina EX-H1 7674487 YP_002731451.1 CDS speD_2 NC_012440.1 1635965 1636390 R identified by match to protein family HMM PF02675; match to protein family HMM TIGR03330; S-adenosylmethionine decarboxylase proenzyme complement(1635965..1636390) Persephonella marina EX-H1 7676166 YP_002731452.1 CDS PERMA_1688 NC_012440.1 1636627 1636818 D identified by Glimmer3; hypothetical protein 1636627..1636818 Persephonella marina EX-H1 7674740 YP_002731453.1 CDS metE NC_012440.1 1636862 1639168 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase complement(1636862..1639168) Persephonella marina EX-H1 7674962 YP_002731454.1 CDS PERMA_1691 NC_012440.1 1639318 1639731 D identified by match to protein family HMM PF01475; ferric uptake regulator, Fur family 1639318..1639731 Persephonella marina EX-H1 7675233 YP_002731455.1 CDS PERMA_1690 NC_012440.1 1639723 1640298 R hypothetical protein complement(1639723..1640298) Persephonella marina EX-H1 7675452 YP_002731456.1 CDS PERMA_1692 NC_012440.1 1640302 1642140 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor complement(1640302..1642140) Persephonella marina EX-H1 7674665 YP_002731457.1 CDS PERMA_1693 NC_012440.1 1642251 1642967 D hypothetical protein 1642251..1642967 Persephonella marina EX-H1 7675903 YP_002731458.1 CDS PERMA_1694 NC_012440.1 1642969 1643244 R ATP synthase complement(1642969..1643244) Persephonella marina EX-H1 7675371 YP_002731459.1 CDS atpC_2 NC_012440.1 1643246 1643638 R identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon complement(1643246..1643638) Persephonella marina EX-H1 7675041 YP_002731460.1 CDS atpD_2 NC_012440.1 1643619 1644986 R identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR01039; ATP synthase F1 betsubunit A complement(1643619..1644986) Persephonella marina EX-H1 7674363 YP_002731461.1 CDS atpG_2 NC_012440.1 1644983 1645819 R identified by match to protein family HMM PF00231; ATP synthase F1 gammsubunit A complement(1644983..1645819) Persephonella marina EX-H1 7675792 YP_002731462.1 CDS atpA_2 NC_012440.1 1645816 1647303 R identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM PF09378; match to protein family HMM TIGR00962; ATP synthase F1 alphsubunit A complement(1645816..1647303) Persephonella marina EX-H1 7675970 YP_002731463.1 CDS PERMA_1699 NC_012440.1 1647290 1648045 R identified by match to protein family HMM PF00430; ATP synthase B/B' CF(0) family complement(1647290..1648045) Persephonella marina EX-H1 7674911 YP_002731464.1 CDS PERMA_1700 NC_012440.1 1648055 1648321 R identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase subunit C complement(1648055..1648321) Persephonella marina EX-H1 7676047 YP_002731465.1 CDS atpB_2 NC_012440.1 1648337 1649074 R identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131; ATP synthase F0 subunit A complement(1648337..1649074) Persephonella marina EX-H1 7674232 YP_002731466.1 CDS PERMA_1702 NC_012440.1 1649076 1649333 R identified by Glimmer3; hypothetical protein complement(1649076..1649333) Persephonella marina EX-H1 7675482 YP_002731467.1 CDS PERMA_1703 NC_012440.1 1649330 1650556 R identified by match to protein family HMM PF00999; sodium/hydrogen exchanger complement(1649330..1650556) Persephonella marina EX-H1 7674792 YP_002731468.1 CDS tkt NC_012440.1 1650573 1652567 R identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase complement(1650573..1652567) Persephonella marina EX-H1 7674278 YP_002731469.1 CDS aat NC_012440.1 1652649 1653332 R identified by match to protein family HMM PF03588; match to protein family HMM TIGR00667; leucyl/phenylalanyl-tRNA--protein transferase complement(1652649..1653332) Persephonella marina EX-H1 7675901 YP_002731470.1 CDS truD_2 NC_012440.1 1653356 1654249 R identified by match to protein family HMM PF01142; tRNA pseudouridine synthase D complement(1653356..1654249) Persephonella marina EX-H1 7675273 YP_002731471.1 CDS PERMA_1707 NC_012440.1 1654323 1654871 D identified by match to protein family HMM PF04368; hypothetical protein 1654323..1654871 Persephonella marina EX-H1 7675068 YP_002731472.1 CDS galT NC_012440.1 1654900 1655940 D identified by match to protein family HMM PF01087; match to protein family HMM TIGR00209; galactose-1-phosphate uridylyltransferase 1654900..1655940 Persephonella marina EX-H1 7675999 YP_002731473.1 CDS PERMA_1709 NC_012440.1 1655951 1656631 D identified by match to protein family HMM PF08761; leucyl/phenylalanyl-tRNA--protein transferase 1655951..1656631 Persephonella marina EX-H1 7675655 YP_002731474.1 CDS PERMA_1711 NC_012440.1 1656648 1657514 D identified by match to protein family HMM PF01972; periplasmic serine protease 1656648..1657514 Persephonella marina EX-H1 7675540 YP_002731475.1 CDS PERMA_1710 NC_012440.1 1657492 1657671 R identified by Glimmer3; hypothetical protein complement(1657492..1657671) Persephonella marina EX-H1 7675687 YP_002731476.1 CDS PERMA_1712 NC_012440.1 1658109 1658993 R identified by match to protein family HMM PF00763; match to protein family HMM PF02882; bifunctional protein fold protein complement(1658109..1658993) Persephonella marina EX-H1 7674387 YP_002731477.1 CDS PERMA_1713 NC_012440.1 1659003 1659242 R identified by Glimmer3; hypothetical protein complement(1659003..1659242) Persephonella marina EX-H1 7675017 YP_002731478.1 CDS PERMA_1714 NC_012440.1 1659315 1661165 R identified by match to protein family HMM PF00549; ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) complement(1659315..1661165) Persephonella marina EX-H1 7675457 YP_002731479.1 CDS PERMA_1715 NC_012440.1 1661195 1662505 R ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(Citrate cleavage enzyme) complement(1661195..1662505) Persephonella marina EX-H1 7674885 YP_002731480.1 CDS PERMA_1716 NC_012440.1 1662620 1664863 R identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178; isocitrate dehydrogenase, NADP-dependent complement(1662620..1664863) Persephonella marina EX-H1 7676046 YP_002731481.1 CDS leuC NC_012440.1 1665092 1666378 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 1665092..1666378 Persephonella marina EX-H1 7675253 YP_002731482.1 CDS PERMA_1718 NC_012440.1 1666400 1666594 D hypothetical protein 1666400..1666594 Persephonella marina EX-H1 7675324 YP_002731483.1 CDS PERMA_1719 NC_012440.1 1666591 1667019 D identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein 1666591..1667019 Persephonella marina EX-H1 7675929 YP_002731484.1 CDS PERMA_1720 NC_012440.1 1667012 1667992 D identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; aminodeoxychorismate lyase 1667012..1667992 Persephonella marina EX-H1 7674769 YP_002731485.1 CDS PERMA_1721 NC_012440.1 1668015 1669028 D identified by match to protein family HMM PF03739; permease, YjgP/YjgQ family 1668015..1669028 Persephonella marina EX-H1 7675877 YP_002731486.1 CDS aroA NC_012440.1 1669029 1670327 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1669029..1670327) Persephonella marina EX-H1 7675004 YP_002731487.1 CDS PERMA_1723 NC_012440.1 1670335 1671255 R general secretion pathway protein A complement(1670335..1671255) Persephonella marina EX-H1 7675072 YP_002731488.1 CDS lptA NC_012440.1 1671255 1671725 R identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002; lipopolysaccharide transport periplasmic protein LptA complement(1671255..1671725) Persephonella marina EX-H1 7675953 YP_002731489.1 CDS PERMA_1725 NC_012440.1 1671726 1672238 R identified by match to protein family HMM PF06835; hypothetical protein complement(1671726..1672238) Persephonella marina EX-H1 7674256 YP_002731490.1 CDS hemA NC_012440.1 1672241 1673557 R identified by match to protein family HMM PF00745; match to protein family HMM PF01488; match to protein family HMM PF05201; match to protein family HMM TIGR01035; glutamyl-tRNA reductase complement(1672241..1673557) Persephonella marina EX-H1 7676130 YP_002731491.1 CDS PERMA_1727 NC_012440.1 1673662 1675278 D identified by match to protein family HMM PF00209; sodium-dependent transporter 1673662..1675278 Persephonella marina EX-H1 7676132 YP_002731492.1 CDS PERMA_1728 NC_012440.1 1675259 1675381 D identified by Glimmer3; hypothetical protein 1675259..1675381 Persephonella marina EX-H1 7675079 YP_002731493.1 CDS PERMA_1729 NC_012440.1 1675395 1675817 D identified by match to protein family HMM PF00334; nucleoside diphosphate kinase 1675395..1675817 Persephonella marina EX-H1 7674776 YP_002731494.1 CDS PERMA_1730 NC_012440.1 1675810 1676307 D hypothetical protein 1675810..1676307 Persephonella marina EX-H1 7675463 YP_002731495.1 CDS PERMA_1731 NC_012440.1 1676365 1676748 D identified by match to protein family HMM PF00672; phototaxis transducer II 1676365..1676748 Persephonella marina EX-H1 7675828 YP_002731496.1 CDS PERMA_1732 NC_012440.1 1676788 1677756 D identified by Glimmer3; hypothetical protein 1676788..1677756 Persephonella marina EX-H1 7674820 YP_002731497.1 CDS PERMA_1733 NC_012440.1 1677794 1678153 D identified by match to protein family HMM PF03259; roadblock/LC7 domain protein 1677794..1678153 Persephonella marina EX-H1 7675325 YP_002731498.1 CDS PERMA_1734 NC_012440.1 1678160 1678855 D hypothetical protein 1678160..1678855 Persephonella marina EX-H1 7675185 YP_002731499.1 CDS PERMA_1736 NC_012440.1 1678857 1679399 D identified by match to protein family HMM PF00071; match to protein family HMM PF03029; match to protein family HMM PF08477; match to protein family HMM TIGR00231; small GTP-binding protein 1678857..1679399 Persephonella marina EX-H1 7674358 YP_002731500.1 CDS PERMA_1735 NC_012440.1 1679396 1680703 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; 5-methylthioadenosine/S-adenosylhomocysteine deaminase complement(1679396..1680703) Persephonella marina EX-H1 7675076 YP_002731501.1 CDS PERMA_1737 NC_012440.1 1680826 1682040 D identified by match to protein family HMM PF02687; lipoprotein releasing system, transmembrane protein, LolC/E family 1680826..1682040 Persephonella marina EX-H1 7675216 YP_002731502.1 CDS PERMA_1738 NC_012440.1 1682033 1682707 D identified by match to protein family HMM PF00005; lipoprotein-releasing system ATP-binding protein LolD 1682033..1682707 Persephonella marina EX-H1 7674193 YP_002731503.1 CDS PERMA_1739 NC_012440.1 1682780 1685230 D identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; negative regulator of genetic competence ClpC/mecB 1682780..1685230 Persephonella marina EX-H1 7676048 YP_002731504.1 CDS yaeT NC_012440.1 1685623 1687587 D identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303; outer membrane protein assembly complex, YaeT protein 1685623..1687587 Persephonella marina EX-H1 7674706 YP_002731505.1 CDS PERMA_1741 NC_012440.1 1687599 1688102 D identified by match to protein family HMM PF03938; hypothetical protein 1687599..1688102 Persephonella marina EX-H1 7674735 YP_002731506.1 CDS lpxD NC_012440.1 1688099 1689085 D identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1688099..1689085 Persephonella marina EX-H1 7674881 YP_002731507.1 CDS PERMA_1742 NC_012440.1 1689082 1689936 R identified by match to protein family HMM PF02683; cytochrome C biogenesis protein complement(1689082..1689936) Persephonella marina EX-H1 7674978 YP_002731508.1 CDS PERMA_1744 NC_012440.1 1689940 1690419 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thiol/disulfide interchange protein complement(1689940..1690419) Persephonella marina EX-H1 7676038 YP_002731509.1 CDS PERMA_1746 NC_012440.1 1690542 1691273 D identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384; fumarate reductase iron-sulfur subunit 1690542..1691273 Persephonella marina EX-H1 7675381 YP_002731510.1 CDS PERMA_1745 NC_012440.1 1691270 1692337 R identified by match to protein family HMM PF01594; similar to protein aq_740; membrane protein complement(1691270..1692337) Persephonella marina EX-H1 7674660 YP_002731511.1 CDS PERMA_1747 NC_012440.1 1692465 1693409 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UXS-1) complement(1692465..1693409) Persephonella marina EX-H1 7674209 YP_002731512.1 CDS PERMA_1748 NC_012440.1 1693409 1694632 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; NADH dehydrogenase complement(1693409..1694632) Persephonella marina EX-H1 7675489 YP_002731513.1 CDS PERMA_1749 NC_012440.1 1694687 1695487 R catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate; fructose-bisphosphate aldolase complement(1694687..1695487) Persephonella marina EX-H1 7675189 YP_002731514.1 CDS PERMA_1750 NC_012440.1 1695512 1695649 R identified by Glimmer3; hypothetical protein complement(1695512..1695649) Persephonella marina EX-H1 7675292 YP_002731515.1 CDS PERMA_1751 NC_012440.1 1695636 1696037 R conserved protein YrvD complement(1695636..1696037) Persephonella marina EX-H1 7674426 YP_002731516.1 CDS PERMA_1752 NC_012440.1 1696027 1696530 R identified by match to protein family HMM PF01230; histidine triad complement(1696027..1696530) Persephonella marina EX-H1 7675878 YP_002731517.1 CDS PERMA_1753 NC_012440.1 1696540 1698618 R identified by match to protein family HMM TIGR00595; primosomal protein N' complement(1696540..1698618) Persephonella marina EX-H1 7674530 YP_002731518.1 CDS hslV NC_012440.1 1698622 1699155 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(1698622..1699155) Persephonella marina EX-H1 7675132 YP_002731519.1 CDS PERMA_1755 NC_012440.1 1699142 1699741 R identified by match to protein family HMM PF00877; gamma-DL-glutamyl hydrolase (Poly-gamma-glutamate depolymerase) (PGA depolymerase) complement(1699142..1699741) Persephonella marina EX-H1 7674377 YP_002731520.1 CDS PERMA_1756 NC_012440.1 1699823 1700281 D identified by match to protein family HMM PF03602; hypothetical protein 1699823..1700281 Persephonella marina EX-H1 7674496 YP_002731521.1 CDS coaD NC_012440.1 1700278 1700763 D identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510; pantetheine-phosphate adenylyltransferase 1700278..1700763 Persephonella marina EX-H1 7674541 YP_002731522.1 CDS PERMA_1758 NC_012440.1 1700793 1701260 D identified by Glimmer3; hypothetical protein 1700793..1701260 Persephonella marina EX-H1 7674458 YP_002731523.1 CDS holA NC_012440.1 1701260 1702258 D identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128; DNA polymerase III, deltsubunit A 1701260..1702258 Persephonella marina EX-H1 7675811 YP_002731524.1 CDS ruvB NC_012440.1 1702258 1703223 D identified by match to protein family HMM PF00004; match to protein family HMM PF00308; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM PF07728; match to protein family HMM TIGR00635; holliday junction DNA helicase RuvB 1702258..1703223 Persephonella marina EX-H1 7674830 YP_002731525.1 CDS nadA NC_012440.1 1703298 1704239 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1703298..1704239 Persephonella marina EX-H1 7675191 YP_002731526.1 CDS PERMA_1762 NC_012440.1 1704286 1704636 R identified by match to protein family HMM PF00581; uba/thif-type NAD/fad binding fold protein complement(1704286..1704636) Persephonella marina EX-H1 7675343 YP_002731527.1 CDS PERMA_1763 NC_012440.1 1704814 1706217 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; D-lactate dehydrogenase 1704814..1706217 Persephonella marina EX-H1 7675566 YP_002731528.1 CDS cas_5 NC_012440.1 1706294 1707094 D identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877; CRISPR-associated protein Cas6 1706294..1707094 Persephonella marina EX-H1 7674913 YP_002731529.1 CDS PERMA_1764 NC_012440.1 1707088 1708071 R ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3endonuclease) complement(1707088..1708071) Persephonella marina EX-H1 7675288 YP_002731530.1 CDS PERMA_1767 NC_012440.1 1708144 1709427 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase with PAS/PAC sensor 1708144..1709427 Persephonella marina EX-H1 7674957 YP_002731531.1 CDS PERMA_1766 NC_012440.1 1709416 1710273 R identified by match to protein family HMM PF04389; peptidase M28 complement(1709416..1710273) Persephonella marina EX-H1 7675642 YP_002731532.1 CDS PERMA_1769 NC_012440.1 1710373 1710798 D identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481; hypothetical protein 1710373..1710798 Persephonella marina EX-H1 7674375 YP_002731533.1 CDS PERMA_1768 NC_012440.1 1710786 1711421 R identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase, UbiE/COQ5 family complement(1710786..1711421) Persephonella marina EX-H1 7674266 YP_002731534.1 CDS PERMA_1770 NC_012440.1 1711423 1714188 R identified by Glimmer3; hypothetical protein complement(1711423..1714188) Persephonella marina EX-H1 7675161 YP_002731535.1 CDS PERMA_1772 NC_012440.1 1714983 1717412 R identified by match to protein family HMM TIGR01760; phage-related membrane protein complement(1714983..1717412) Persephonella marina EX-H1 7675638 YP_002731536.1 CDS PERMA_1773 NC_012440.1 1717412 1717933 R identified by Glimmer3; hypothetical protein complement(1717412..1717933) Persephonella marina EX-H1 7675282 YP_002731537.1 CDS PERMA_1774 NC_012440.1 1717933 1719192 R hypothetical protein complement(1717933..1719192) Persephonella marina EX-H1 7675261 YP_002731538.1 CDS PERMA_1776 NC_012440.1 1719555 1719698 D identified by Glimmer3; hypothetical protein 1719555..1719698 Persephonella marina EX-H1 7674340 YP_002731539.1 CDS PERMA_1775 NC_012440.1 1719669 1719938 R identified by Glimmer3; hypothetical protein complement(1719669..1719938) Persephonella marina EX-H1 7674730 YP_002731540.1 CDS PERMA_1777 NC_012440.1 1719922 1721268 R identified by Glimmer3; hypothetical protein complement(1719922..1721268) Persephonella marina EX-H1 7675627 YP_002731541.1 CDS PERMA_1778 NC_012440.1 1721261 1721572 R identified by Glimmer3; hypothetical protein complement(1721261..1721572) Persephonella marina EX-H1 7675516 YP_002731542.1 CDS PERMA_1779 NC_012440.1 1721563 1721886 R identified by Glimmer3; hypothetical protein complement(1721563..1721886) Persephonella marina EX-H1 7674534 YP_002731543.1 CDS PERMA_1780 NC_012440.1 1721923 1722888 R identified by Glimmer3; hypothetical protein complement(1721923..1722888) Persephonella marina EX-H1 7674828 YP_002731544.1 CDS PERMA_1781 NC_012440.1 1722906 1723250 R gifsy-2 prophage; RecA/RadA recombinase complement(1722906..1723250) Persephonella marina EX-H1 7675653 YP_002731545.1 CDS PERMA_1782 NC_012440.1 1723265 1724143 R identified by Glimmer3; hypothetical protein complement(1723265..1724143) Persephonella marina EX-H1 7674765 YP_002731546.1 CDS PERMA_1783 NC_012440.1 1724197 1724922 R identified by Glimmer3; hypothetical protein complement(1724197..1724922) Persephonella marina EX-H1 7675787 YP_002731547.1 CDS PERMA_1784 NC_012440.1 1725059 1725616 R identified by Glimmer3; hypothetical protein complement(1725059..1725616) Persephonella marina EX-H1 7676058 YP_002731548.1 CDS PERMA_1785 NC_012440.1 1725741 1726820 R identified by Glimmer3; hypothetical protein complement(1725741..1726820) Persephonella marina EX-H1 7674898 YP_002731549.1 CDS PERMA_1786 NC_012440.1 1727009 1727179 R identified by Glimmer3; hypothetical protein complement(1727009..1727179) Persephonella marina EX-H1 7675548 YP_002731550.1 CDS PERMA_1787 NC_012440.1 1727154 1727615 R identified by match to protein family HMM PF09643; YopX protein complement(1727154..1727615) Persephonella marina EX-H1 7675456 YP_002731551.1 CDS PERMA_1788 NC_012440.1 1727987 1728229 R hypothetical protein complement(1727987..1728229) Persephonella marina EX-H1 7675564 YP_002731552.1 CDS PERMA_1789 NC_012440.1 1728567 1728845 R identified by match to protein family HMM PF00216; DNA-binding protein HU 1 (DNA-binding protein II) (HB) complement(1728567..1728845) Persephonella marina EX-H1 7676140 YP_002731553.1 CDS PERMA_1790 NC_012440.1 1728950 1729588 R identified by Glimmer3; hypothetical protein complement(1728950..1729588) Persephonella marina EX-H1 7675154 YP_002731554.1 CDS PERMA_1791 NC_012440.1 1729601 1730122 R identified by Glimmer3; hypothetical protein complement(1729601..1730122) Persephonella marina EX-H1 7675307 YP_002731555.1 CDS PERMA_1792 NC_012440.1 1730119 1730661 R identified by Glimmer3; hypothetical protein complement(1730119..1730661) Persephonella marina EX-H1 7675225 YP_002731556.1 CDS PERMA_1793 NC_012440.1 1730658 1731350 R identified by Glimmer3; hypothetical protein complement(1730658..1731350) Persephonella marina EX-H1 7674328 YP_002731557.1 CDS PERMA_1794 NC_012440.1 1731352 1732806 R identified by match to protein family HMM PF00665; match to protein family HMM PF02796; integrase core domain protein complement(1731352..1732806) Persephonella marina EX-H1 7675211 YP_002731558.1 CDS PERMA_1795 NC_012440.1 1732812 1733831 R identified by Glimmer3; hypothetical protein complement(1732812..1733831) Persephonella marina EX-H1 7675465 YP_002731559.1 CDS PERMA_1796 NC_012440.1 1734066 1734281 R identified by Glimmer3; hypothetical protein complement(1734066..1734281) Persephonella marina EX-H1 7674461 YP_002731560.1 CDS PERMA_1797 NC_012440.1 1734294 1734764 R identified by Glimmer3; hypothetical protein complement(1734294..1734764) Persephonella marina EX-H1 7676022 YP_002731561.1 CDS PERMA_1798 NC_012440.1 1735573 1736052 D identified by match to protein family HMM PF01381; XRE family transcriptional regulator 1735573..1736052 Persephonella marina EX-H1 7674453 YP_002731562.1 CDS PERMA_1799 NC_012440.1 1736079 1736588 D identified by Glimmer3; hypothetical protein 1736079..1736588 Persephonella marina EX-H1 7675905 YP_002731563.1 CDS PERMA_1800 NC_012440.1 1736712 1736882 D identified by Glimmer3; hypothetical protein 1736712..1736882 Persephonella marina EX-H1 7675143 YP_002731564.1 CDS PERMA_1801 NC_012440.1 1736848 1737684 D identified by Glimmer3; hypothetical protein 1736848..1737684 Persephonella marina EX-H1 7674741 YP_002731565.1 CDS PERMA_1802 NC_012440.1 1737689 1738324 D identified by Glimmer3; hypothetical protein 1737689..1738324 Persephonella marina EX-H1 7674513 YP_002731566.1 CDS PERMA_1803 NC_012440.1 1738345 1739388 D identified by Glimmer3; hypothetical protein 1738345..1739388 Persephonella marina EX-H1 7674357 YP_002731567.1 CDS PERMA_1804 NC_012440.1 1739381 1739749 D identified by Glimmer3; hypothetical protein 1739381..1739749 Persephonella marina EX-H1 7676016 YP_002731568.1 CDS PERMA_1805 NC_012440.1 1739727 1740431 D identified by Glimmer3; hypothetical protein 1739727..1740431 Persephonella marina EX-H1 7675631 YP_002731569.1 CDS PERMA_1806 NC_012440.1 1740464 1741171 D identified by Glimmer3; hypothetical protein 1740464..1741171 Persephonella marina EX-H1 7674282 YP_002731570.1 CDS PERMA_1807 NC_012440.1 1741173 1741565 D identified by Glimmer3; hypothetical protein 1741173..1741565 Persephonella marina EX-H1 7675166 YP_002731571.1 CDS PERMA_1808 NC_012440.1 1741576 1741995 D identified by Glimmer3; hypothetical protein 1741576..1741995 Persephonella marina EX-H1 7674604 YP_002731572.1 CDS PERMA_1809 NC_012440.1 1741999 1743162 D identified by match to protein family HMM PF04865; hypothetical protein 1741999..1743162 Persephonella marina EX-H1 7675201 YP_002731573.1 CDS PERMA_1810 NC_012440.1 1743166 1743804 D identified by Glimmer3; hypothetical protein 1743166..1743804 Persephonella marina EX-H1 7674467 YP_002731574.1 CDS PERMA_1811 NC_012440.1 1743886 1744167 D identified by match to protein family HMM PF01870; holliday junction resolvase Hjc 1743886..1744167 Persephonella marina EX-H1 7675283 YP_002731575.1 CDS PERMA_1812 NC_012440.1 1744149 1744442 D identified by Glimmer3; hypothetical protein 1744149..1744442 Persephonella marina EX-H1 7674649 YP_002731576.1 CDS PERMA_1813 NC_012440.1 1744426 1744719 D identified by Glimmer3; hypothetical protein 1744426..1744719 Persephonella marina EX-H1 7676014 YP_002731577.1 CDS PERMA_1814 NC_012440.1 1744722 1745234 D identified by Glimmer3; hypothetical protein 1744722..1745234 Persephonella marina EX-H1 7675704 YP_002731578.1 CDS PERMA_1815 NC_012440.1 1745224 1746780 D identified by match to protein family HMM PF03237; match to protein family HMM TIGR01630; hypothetical protein 1745224..1746780 Persephonella marina EX-H1 7675203 YP_002731579.1 CDS PERMA_1816 NC_012440.1 1746874 1747233 D hypothetical protein 1746874..1747233 Persephonella marina EX-H1 7674456 YP_002731580.1 CDS PERMA_1817 NC_012440.1 1747330 1747782 D identified by Glimmer3; hypothetical protein 1747330..1747782 Persephonella marina EX-H1 7674691 YP_002731581.1 CDS PERMA_1818 NC_012440.1 1747779 1748078 D identified by Glimmer3; hypothetical protein 1747779..1748078 Persephonella marina EX-H1 7676108 YP_002731582.1 CDS PERMA_1819 NC_012440.1 1748078 1749277 D identified by Glimmer3; hypothetical protein 1748078..1749277 Persephonella marina EX-H1 7674255 YP_002731583.1 CDS PERMA_1820 NC_012440.1 1749284 1749736 D hypothetical protein 1749284..1749736 Persephonella marina EX-H1 7674592 YP_002731584.1 CDS PERMA_1821 NC_012440.1 1749736 1750401 D identified by Glimmer3; hypothetical protein 1749736..1750401 Persephonella marina EX-H1 7675050 YP_002731585.1 CDS PERMA_1822 NC_012440.1 1750403 1750951 D identified by Glimmer3; hypothetical protein 1750403..1750951 Persephonella marina EX-H1 7674695 YP_002731586.1 CDS PERMA_1823 NC_012440.1 1750964 1751878 D identified by Glimmer3; hypothetical protein 1750964..1751878 Persephonella marina EX-H1 7674894 YP_002731587.1 CDS PERMA_1824 NC_012440.1 1752498 1752716 D lysozyme (Muramidase) (Lytic enzyme) (Protein P15) 1752498..1752716 Persephonella marina EX-H1 7674690 YP_002731588.1 CDS PERMA_1825 NC_012440.1 1752719 1753840 D identified by Glimmer3; hypothetical protein 1752719..1753840 Persephonella marina EX-H1 7674388 YP_002731589.1 CDS PERMA_1826 NC_012440.1 1753837 1754082 D identified by Glimmer3; hypothetical protein 1753837..1754082 Persephonella marina EX-H1 7675054 YP_002731590.1 CDS PERMA_1827 NC_012440.1 1754051 1754503 D identified by Glimmer3; hypothetical protein 1754051..1754503 Persephonella marina EX-H1 7675745 YP_002731591.1 CDS gmhA NC_012440.1 1755174 1755755 D identified by match to protein family HMM TIGR00441; phosphoheptose isomerase 1755174..1755755 Persephonella marina EX-H1 7675635 YP_002731592.1 CDS PERMA_1829 NC_012440.1 1755748 1756995 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; ATPase AAA complement(1755748..1756995) Persephonella marina EX-H1 7676098 YP_002731593.1 CDS PERMA_1831 NC_012440.1 1756998 1757978 R identified by match to protein family HMM PF00515; hypothetical protein complement(1756998..1757978) Persephonella marina EX-H1 7674469 YP_002731594.1 CDS PERMA_1832 NC_012440.1 1758005 1759120 R identified by match to protein family HMM PF07690; major facilitator superfamily MFS_1 complement(1758005..1759120) Persephonella marina EX-H1 7674895 YP_002731595.1 CDS PERMA_1833 NC_012440.1 1759193 1760779 D identified by match to protein family HMM PF01935; match to protein family HMM PF09378; universally conserved protein 1759193..1760779 Persephonella marina EX-H1 7675218 YP_002731596.1 CDS PERMA_1834 NC_012440.1 1760779 1761441 D identified by match to protein family HMM PF00156; phosphoribosyltransferase 1760779..1761441 Persephonella marina EX-H1 7675245 YP_002731597.1 CDS PERMA_1835 NC_012440.1 1761438 1762049 D cytochrome c family protein 1761438..1762049 Persephonella marina EX-H1 7674303 YP_002731598.1 CDS PERMA_1836 NC_012440.1 1762109 1762414 D identified by Glimmer3; hypothetical protein 1762109..1762414 Persephonella marina EX-H1 7675200 YP_002731599.1 CDS PERMA_1837 NC_012440.1 1762433 1762654 R hypothetical protein complement(1762433..1762654) Persephonella marina EX-H1 7675756 YP_002731600.1 CDS PERMA_1838 NC_012440.1 1762779 1763879 D identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539; oxygen-independent coproporphyrinogen III oxidase 1762779..1763879 Persephonella marina EX-H1 7676131 YP_002731601.1 CDS PERMA_1839 NC_012440.1 1763975 1766086 D cytochrome c family protein 1763975..1766086 Persephonella marina EX-H1 7675504 YP_002731602.1 CDS ligA NC_012440.1 1766087 1768231 R identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase, NAD-dependent complement(1766087..1768231) Persephonella marina EX-H1 7675572 YP_002731603.1 CDS deoC NC_012440.1 1768236 1768895 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(1768236..1768895) Persephonella marina EX-H1 7676139 YP_002731604.1 CDS prmA NC_012440.1 1768861 1769700 R identified by match to protein family HMM PF06325; match to protein family HMM PF08241; ribosomal protein L11 methyltransferase complement(1768861..1769700) Persephonella marina EX-H1 7675652 YP_002731605.1 CDS PERMA_1843 NC_012440.1 1769702 1770130 R identified by Glimmer3; hypothetical protein complement(1769702..1770130) Persephonella marina EX-H1 7675973 YP_002731606.1 CDS PERMA_1844 NC_012440.1 1770143 1770571 R identified by match to protein family HMM PF00376; transcriptional regulator complement(1770143..1770571) Persephonella marina EX-H1 7674297 YP_002731607.1 CDS dnaJ NC_012440.1 1770587 1771717 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1770587..1771717) Persephonella marina EX-H1 7675722 YP_002731608.1 CDS hisD NC_012440.1 1771789 1773078 R identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069; histidinol dehydrogenase complement(1771789..1773078) Persephonella marina EX-H1 7674272 YP_002731609.1 CDS PERMA_1847 NC_012440.1 1773147 1773770 D identified by match to protein family HMM PF02578; similar to protein aq_167; hypothetical protein 1773147..1773770 Persephonella marina EX-H1 7674515 YP_002731610.1 CDS accD NC_012440.1 1773771 1774607 D identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase, betsubunit A 1773771..1774607 Persephonella marina EX-H1 7675021 YP_002731611.1 CDS mobB NC_012440.1 1774609 1775106 D identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B 1774609..1775106 Persephonella marina EX-H1 7675675 YP_002731612.1 CDS PERMA_1850 NC_012440.1 1775139 1775408 D identified by match to protein family HMM PF00708; acylphosphatase 1775139..1775408 Persephonella marina EX-H1 7674186 YP_002731613.1 CDS PERMA_1851 NC_012440.1 1775392 1776603 D identified by match to protein family HMM PF01476; match to protein family HMM PF01551; lipoprotein 1775392..1776603 Persephonella marina EX-H1 7675333 YP_002731614.1 CDS PERMA_1852 NC_012440.1 1776644 1777873 D identified by match to protein family HMM PF00155; aminotransferase, class I/II 1776644..1777873 Persephonella marina EX-H1 7675933 YP_002731615.1 CDS PERMA_1853 NC_012440.1 1777880 1778614 D identified by match to protein family HMM PF00005; ABC transporter 1777880..1778614 Persephonella marina EX-H1 7674501 YP_002731616.1 CDS bioW NC_012440.1 1778614 1779357 D catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A; 6-carboxyhexanoate--CoA ligase 1778614..1779357 Persephonella marina EX-H1 7675223 YP_002731617.1 CDS PERMA_1855 NC_012440.1 1779350 1779700 D identified by Glimmer3; hypothetical protein 1779350..1779700 Persephonella marina EX-H1 7675380 YP_002731618.1 CDS PERMA_1856 NC_012440.1 1779690 1780361 D carboxylesterase BioH (Biotin synthesis protein bioH) 1779690..1780361 Persephonella marina EX-H1 7675931 YP_002731619.1 CDS PERMA_1857 NC_012440.1 1780398 1781099 D identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase, UbiE/COQ5 family 1780398..1781099 Persephonella marina EX-H1 7675369 YP_002731620.1 CDS PERMA_1858 NC_012440.1 1781300 1781425 D identified by Glimmer3; hypothetical protein 1781300..1781425 Persephonella marina EX-H1 7676149 YP_002731621.1 CDS PERMA_1859 NC_012440.1 1781485 1781793 D hypothetical protein 1781485..1781793 Persephonella marina EX-H1 7675599 YP_002731622.1 CDS PERMA_1860 NC_012440.1 1781966 1782190 D identified by match to protein family HMM PF04255; hypothetical protein 1781966..1782190 Persephonella marina EX-H1 7675298 YP_002731623.1 CDS PERMA_1861 NC_012440.1 1782180 1782296 D identified by Glimmer3; hypothetical protein 1782180..1782296 Persephonella marina EX-H1 7675227 YP_002731624.1 CDS PERMA_1862 NC_012440.1 1782635 1782844 D hypothetical protein 1782635..1782844 Persephonella marina EX-H1 7674783 YP_002731625.1 CDS PERMA_1863 NC_012440.1 1782841 1783209 D identified by match to protein family HMM PF01850; PIN domain protein 1782841..1783209 Persephonella marina EX-H1 7675921 YP_002731626.1 CDS PERMA_1864 NC_012440.1 1783372 1783596 D identified by match to protein family HMM PF03683; hypothetical protein 1783372..1783596 Persephonella marina EX-H1 7675418 YP_002731627.1 CDS PERMA_1865 NC_012440.1 1783819 1783998 D hypothetical protein 1783819..1783998 Persephonella marina EX-H1 7676115 YP_002731628.1 CDS PERMA_1866 NC_012440.1 1784053 1784286 D identified by Glimmer3; hypothetical protein 1784053..1784286 Persephonella marina EX-H1 7676128 YP_002731629.1 CDS PERMA_1867 NC_012440.1 1784283 1784702 D identified by match to protein family HMM PF01850; PIN domain protein 1784283..1784702 Persephonella marina EX-H1 7674590 YP_002731630.1 CDS PERMA_1868 NC_012440.1 1784889 1785128 D virulence protein 1784889..1785128 Persephonella marina EX-H1 7676085 YP_002731631.1 CDS PERMA_1869 NC_012440.1 1785128 1785532 D identified by match to protein family HMM PF01850; PilT protein domain protein 1785128..1785532 Persephonella marina EX-H1 7674984 YP_002731632.1 CDS PERMA_1870 NC_012440.1 1785568 1785858 R identified by Glimmer3; hypothetical protein complement(1785568..1785858) Persephonella marina EX-H1 7675663 YP_002731633.1 CDS PERMA_1871 NC_012440.1 1785866 1787137 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase with GAF sensor complement(1785866..1787137) Persephonella marina EX-H1 7674777 YP_002731634.1 CDS mtnB NC_012440.1 1787204 1787851 D converts methylthioribulose-1-phosphate into 2,3-diketo-5-methylthiopentyl-1-phosphate; involved in methionine salvage; methylthioribulose-1-phosphate dehydratase 1787204..1787851 Persephonella marina EX-H1 7675940 YP_002731635.1 CDS PERMA_1873 NC_012440.1 1787864 1788403 D identified by match to protein family HMM PF03079; match to protein family HMM PF07883; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1787864..1788403 Persephonella marina EX-H1 7675392 YP_002731636.1 CDS PERMA_1874 NC_012440.1 1788413 1789183 D identified by match to protein family HMM PF00106; enoyl-(acyl carrier protein) reductase 1788413..1789183 Persephonella marina EX-H1 7674416 YP_002731637.1 CDS thiS NC_012440.1 1789226 1789426 D identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 1789226..1789426 Persephonella marina EX-H1 7674718 YP_002731638.1 CDS hisS NC_012440.1 1789429 1790664 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1789429..1790664 Persephonella marina EX-H1 7675743 YP_002731639.1 CDS PERMA_1876 NC_012440.1 1790658 1791068 R identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481; hemerythrin sipunculid complement(1790658..1791068) Persephonella marina EX-H1 7675987 YP_002731640.1 CDS tgt NC_012440.1 1791273 1792319 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1791273..1792319 Persephonella marina EX-H1 7675196 YP_002731641.1 CDS PERMA_1879 NC_012440.1 1792360 1793034 D identified by match to protein family HMM PF01936; hypothetical protein 1792360..1793034 Persephonella marina EX-H1 7675133 YP_002731642.1 CDS PERMA_1880 NC_012440.1 1793031 1793951 D identified by match to protein family HMM PF00850; histone deacetylase 14 1793031..1793951 Persephonella marina EX-H1 7676092 YP_002731643.1 CDS PERMA_1882 NC_012440.1 1793948 1795423 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01085; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptidesynt 1793948..1795423 Persephonella marina EX-H1 7675536 YP_002731644.1 CDS PERMA_1881 NC_012440.1 1795420 1797285 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase complement(1795420..1797285) Persephonella marina EX-H1 7675750 YP_002731645.1 CDS PERMA_1883 NC_012440.1 1797287 1797667 R identified by Glimmer3; hypothetical protein complement(1797287..1797667) Persephonella marina EX-H1 7675067 YP_002731646.1 CDS PERMA_1884 NC_012440.1 1797742 1799655 R hypothetical protein complement(1797742..1799655) Persephonella marina EX-H1 7675683 YP_002731647.1 CDS PERMA_1885 NC_012440.1 1799771 1800274 R identified by Glimmer3; hypothetical protein complement(1799771..1800274) Persephonella marina EX-H1 7674757 YP_002731648.1 CDS PERMA_1886 NC_012440.1 1800288 1801493 R identified by Glimmer3; hypothetical protein complement(1800288..1801493) Persephonella marina EX-H1 7674420 YP_002731649.1 CDS PERMA_1887 NC_012440.1 1801506 1802039 R lipoprotein complement(1801506..1802039) Persephonella marina EX-H1 7674373 YP_002731650.1 CDS PERMA_1888 NC_012440.1 1802036 1803772 R identified by match to protein family HMM PF02872; match to protein family HMM TIGR01409; 5'-nucleotidase, C- domain protein complement(1802036..1803772) Persephonella marina EX-H1 7675042 YP_002731651.1 CDS PERMA_1889 NC_012440.1 1803782 1804588 R sulfur oxidation protein SoxA complement(1803782..1804588) Persephonella marina EX-H1 7675023 YP_002731652.1 CDS PERMA_1890 NC_012440.1 1804604 1804933 R identified by match to protein family HMM PF08770; sulfur oxidation protein SoxZ complement(1804604..1804933) Persephonella marina EX-H1 7675496 YP_002731653.1 CDS PERMA_1891 NC_012440.1 1804960 1805418 R identified by match to protein family HMM TIGR01409; sulfur oxidation protein SoxY complement(1804960..1805418) Persephonella marina EX-H1 7674465 YP_002731654.1 CDS PERMA_1892 NC_012440.1 1805431 1805883 R thioredoxin complement(1805431..1805883) Persephonella marina EX-H1 7674397 YP_002731655.1 CDS PERMA_1893 NC_012440.1 1805887 1806411 R sulfur oxidation protein SoxX complement(1805887..1806411) Persephonella marina EX-H1 7674208 YP_002731656.1 CDS PERMA_1894 NC_012440.1 1806607 1807941 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) complement(1806607..1807941) Persephonella marina EX-H1 7675365 YP_002731657.1 CDS PERMA_1895 NC_012440.1 1808081 1808599 D identified by match to protein family HMM PF08754; hypothetical protein 1808081..1808599 Persephonella marina EX-H1 7674505 YP_002731658.1 CDS PERMA_1896 NC_012440.1 1808596 1809411 D phosphonates-binding protein 1808596..1809411 Persephonella marina EX-H1 7674747 YP_002731659.1 CDS PERMA_1898 NC_012440.1 1811019 1812809 D identified by match to protein family HMM PF01464; transglycosylase SLT domain protein 1811019..1812809 Persephonella marina EX-H1 7674648 YP_002731660.1 CDS ribE NC_012440.1 1812812 1813450 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1812812..1813450 Persephonella marina EX-H1 7675065 YP_002731661.1 CDS PERMA_1900 NC_012440.1 1813482 1814636 D identified by match to protein family HMM PF02080; match to protein family HMM PF02254; TrkA-N domain family protein 1813482..1814636 Persephonella marina EX-H1 7674402 YP_002731662.1 CDS PERMA_1902 NC_012440.1 1814633 1814983 D MacA 1814633..1814983 Persephonella marina EX-H1 7674425 YP_002731663.1 CDS PERMA_1901 NC_012440.1 1814980 1816728 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase complement(1814980..1816728) Persephonella marina EX-H1 7674871 YP_002731664.1 CDS PERMA_1903 NC_012440.1 1816816 1817421 D identified by match to protein family HMM PF07992; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1816816..1817421 Persephonella marina EX-H1 7675551 YP_002731665.1 CDS PERMA_1904 NC_012440.1 1817433 1818926 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1817433..1818926) Persephonella marina EX-H1 7674570 YP_002731666.1 CDS PERMA_1905 NC_012440.1 1819004 1820056 D identified by match to protein family HMM PF02797; match to protein family HMM PF08541; 3-oxoacyl-ACP synthase III 1819004..1820056 Persephonella marina EX-H1 7675525 YP_002731667.1 CDS PERMA_1906 NC_012440.1 1820142 1820540 D identified by match to protein family HMM PF01880; desulfoferrodoxin, ferrous iron-binding region 1820142..1820540 Persephonella marina EX-H1 7675772 YP_002731668.1 CDS PERMA_1908 NC_012440.1 1820587 1821012 D hypothetical protein 1820587..1821012 Persephonella marina EX-H1 7675603 YP_002731669.1 CDS ribD NC_012440.1 1821009 1822106 R identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD complement(1821009..1822106) Persephonella marina EX-H1 7674992 YP_002731670.1 CDS PERMA_1909 NC_012440.1 1822169 1823929 D identified by match to protein family HMM PF02811; DNA polymerase beta family 1822169..1823929 Persephonella marina EX-H1 7676148 YP_002731671.1 CDS PERMA_1910 NC_012440.1 1823945 1824343 D identified by Glimmer3; hypothetical protein 1823945..1824343 Persephonella marina EX-H1 7674392 YP_002731672.1 CDS gltX NC_012440.1 1824383 1825819 D identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase 1824383..1825819 Persephonella marina EX-H1 7675328 YP_002731673.1 CDS PERMA_1912 NC_012440.1 1825824 1826273 D identified by match to protein family HMM PF00782; dual specificity protein phosphatase 1825824..1826273 Persephonella marina EX-H1 7675367 YP_002731674.1 CDS PERMA_1914 NC_012440.1 1826260 1826646 D identified by Glimmer3; hypothetical protein 1826260..1826646 Persephonella marina EX-H1 7675795 YP_002731675.1 CDS PERMA_1913 NC_012440.1 1826632 1827498 R hypothetical protein complement(1826632..1827498) Persephonella marina EX-H1 7675276 YP_002731676.1 CDS PERMA_1915 NC_012440.1 1827510 1828373 R identified by match to protein family HMM PF00005; spermidine/putrescine import ATP-binding protein PotA complement(1827510..1828373) Persephonella marina EX-H1 7675561 YP_002731677.1 CDS modB NC_012440.1 1828370 1829047 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdate ABC transporter permease complement(1828370..1829047) Persephonella marina EX-H1 7675900 YP_002731678.1 CDS PERMA_1917 NC_012440.1 1829047 1829451 R tobe domain protein complement(1829047..1829451) Persephonella marina EX-H1 7674463 YP_002731679.1 CDS modA NC_012440.1 1829438 1830205 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter substrate-binding protein complement(1829438..1830205) Persephonella marina EX-H1 7675919 YP_002731680.1 CDS PERMA_1919 NC_012440.1 1830256 1831041 R identified by match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638; molybdenum-pterin-binding protein complement(1830256..1831041) Persephonella marina EX-H1 7674334 YP_002731681.1 CDS PERMA_1920 NC_012440.1 1831276 1832463 D identified by match to protein family HMM PF01658; match to protein family HMM PF07994; myo-inositol-1-phosphate synthase 1831276..1832463 Persephonella marina EX-H1 7674498 YP_002731682.1 CDS PERMA_1921 NC_012440.1 1832460 1833695 D identified by match to protein family HMM PF01066; glucose-1-phosphate thymidylyltransferase 1832460..1833695 Persephonella marina EX-H1 7675474 YP_002731683.1 CDS PERMA_1922 NC_012440.1 1833779 1836169 D lipoprotein 1833779..1836169 Persephonella marina EX-H1 7674671 YP_002731684.1 CDS smc NC_012440.1 1836198 1839686 R identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02169; chromosome segregation protein SMC complement(1836198..1839686) Persephonella marina EX-H1 7675914 YP_002731685.1 CDS PERMA_1924 NC_012440.1 1839744 1841300 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1839744..1841300) Persephonella marina EX-H1 7675902 YP_002731686.1 CDS PERMA_1925 NC_012440.1 1841315 1842562 R identified by match to protein family HMM PF03349; membrane protein complement(1841315..1842562) Persephonella marina EX-H1 7674360 YP_002731687.1 CDS hisC_2 NC_012440.1 1842651 1843694 D identified by match to protein family HMM PF00155; match to protein family HMM PF04864; match to protein family HMM TIGR01141; histidinol-phosphate transaminase 1842651..1843694 Persephonella marina EX-H1 7675476 YP_002731688.1 CDS PERMA_1927 NC_012440.1 1843691 1844344 D identified by match to protein family HMM TIGR01906; integral membrane protein 1843691..1844344 Persephonella marina EX-H1 7674330 YP_002731689.1 CDS PERMA_1928 NC_012440.1 1844359 1846146 D hypothetical protein 1844359..1846146 Persephonella marina EX-H1 7675111 YP_002731690.1 CDS pgsA_2 NC_012440.1 1846148 1846681 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1846148..1846681) Persephonella marina EX-H1 7674629 YP_002731691.1 CDS rfaE_2 NC_012440.1 1846668 1847123 R identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199; bifunctional protein RfaE, domain II complement(1846668..1847123) Persephonella marina EX-H1 7675423 YP_002731692.1 CDS PERMA_1931 NC_012440.1 1847125 1847490 R identified by Glimmer3; hypothetical protein complement(1847125..1847490) Persephonella marina EX-H1 7675863 YP_002731693.1 CDS PERMA_1932 NC_012440.1 1847483 1847812 R identified by match to protein family HMM PF00126; molybdenum-pterin-binding protein complement(1847483..1847812) Persephonella marina EX-H1 7675310 YP_002731694.1 CDS PERMA_1933 NC_012440.1 1847827 1848606 R identified by match to protein family HMM PF01478; match to protein family HMM PF06750; leader peptidase PppA complement(1847827..1848606) Persephonella marina EX-H1 7674952 YP_002731695.1 CDS PERMA_1934 NC_012440.1 1848606 1848938 R identified by Glimmer3; hypothetical protein complement(1848606..1848938) Persephonella marina EX-H1 7674976 YP_002731696.1 CDS PERMA_1936 NC_012440.1 1849864 1850433 D hypothetical protein 1849864..1850433 Persephonella marina EX-H1 7674946 YP_002731697.1 CDS PERMA_1937 NC_012440.1 1851065 1851544 D hypothetical protein 1851065..1851544 Persephonella marina EX-H1 7675468 YP_002731698.1 CDS PERMA_1938 NC_012440.1 1851568 1852170 D hypothetical protein 1851568..1852170 Persephonella marina EX-H1 7674300 YP_002731699.1 CDS ppa NC_012440.1 1854552 1855082 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(1854552..1855082) Persephonella marina EX-H1 7674918 YP_002731700.1 CDS valS NC_012440.1 1855304 1858600 R identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422; valyl-tRNA synthetase complement(1855304..1858600) Persephonella marina EX-H1 7674943 YP_002731701.1 CDS PERMA_1948 NC_012440.1 1858674 1859228 R identified by Glimmer3; hypothetical protein complement(1858674..1859228) Persephonella marina EX-H1 7675007 YP_002731702.1 CDS PERMA_1949 NC_012440.1 1859312 1859908 D identified by Glimmer3; hypothetical protein 1859312..1859908 Persephonella marina EX-H1 7675651 YP_002731703.1 CDS argG NC_012440.1 1859929 1861128 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(1859929..1861128) Persephonella marina EX-H1 7674220 YP_002731704.1 CDS PERMA_1951 NC_012440.1 1861196 1862233 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF08238; TPR Domain containing protein 1861196..1862233 Persephonella marina EX-H1 7676069 YP_002731705.1 CDS PERMA_1952 NC_012440.1 1862300 1863322 D identified by match to protein family HMM PF00248; aldo/keto reductase 1862300..1863322 Persephonella marina EX-H1 7675390 YP_002731706.1 CDS PERMA_1953 NC_012440.1 1863391 1864710 D identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein 1863391..1864710 Persephonella marina EX-H1 7674508 YP_002731707.1 CDS PERMA_1954 NC_012440.1 1864707 1865294 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; Redoxin superfamily protein 1864707..1865294 Persephonella marina EX-H1 7675909 YP_002731708.1 CDS PERMA_1955 NC_012440.1 1865296 1865550 D identified by Glimmer3; hypothetical protein 1865296..1865550 Persephonella marina EX-H1 7674446 YP_002731709.1 CDS PERMA_1956 NC_012440.1 1865562 1865942 D identified by match to protein family HMM PF00581; hypothetical protein 1865562..1865942 Persephonella marina EX-H1 7675980 YP_002731710.1 CDS PERMA_1957 NC_012440.1 1865900 1866409 D identified by match to protein family HMM PF01464; soluble lytic murein transglycosylase 1865900..1866409 Persephonella marina EX-H1 7675147 YP_002731711.1 CDS PERMA_1958 NC_012440.1 1866417 1867604 R identified by match to protein family HMM PF01464; membrane-bound lytic murein transglycosylase C complement(1866417..1867604) Persephonella marina EX-H1 7675972 YP_002731712.1 CDS PERMA_1959 NC_012440.1 1867616 1868011 R lipoprotein complement(1867616..1868011) Persephonella marina EX-H1 7674484 YP_002731713.1 CDS PERMA_1960 NC_012440.1 1868052 1868639 R lipoprotein complement(1868052..1868639) Persephonella marina EX-H1 7675915 YP_002731714.1 CDS PERMA_1961 NC_012440.1 1868676 1870544 R identified by Glimmer3; hypothetical protein complement(1868676..1870544) Persephonella marina EX-H1 7675362 YP_002731715.1 CDS PERMA_1962 NC_012440.1 1870560 1871759 R lipoprotein complement(1870560..1871759) Persephonella marina EX-H1 7674191 YP_002731716.1 CDS PERMA_1964 NC_012440.1 1871892 1872521 D lipoprotein 1871892..1872521 Persephonella marina EX-H1 7676138 YP_002731717.1 CDS PERMA_1963 NC_012440.1 1872494 1872955 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein complement(1872494..1872955) Persephonella marina EX-H1 7674908 YP_002731718.1 CDS PERMA_1965 NC_012440.1 1872959 1873930 R identified by match to protein family HMM PF02562; phosphate starvation-inducible protein complement(1872959..1873930) Persephonella marina EX-H1 7675104 YP_002731719.1 CDS rimM NC_012440.1 1873986 1874495 R identified by match to protein family HMM PF01782; match to protein family HMM TIGR02273; 16S rRNA processing protein RimM complement(1873986..1874495) Persephonella marina EX-H1 7675784 YP_002731720.1 CDS PERMA_1967 NC_012440.1 1874501 1874899 R identified by match to protein family HMM PF02472; biopolymer transport protein ExbD/TolR complement(1874501..1874899) Persephonella marina EX-H1 7674812 YP_002731721.1 CDS PERMA_1968 NC_012440.1 1874896 1875537 R identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein complement(1874896..1875537) Persephonella marina EX-H1 7675836 YP_002731722.1 CDS PERMA_1969 NC_012440.1 1875552 1878356 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(1875552..1878356) Persephonella marina EX-H1 7674811 YP_002731723.1 CDS ribF NC_012440.1 1878353 1879273 R identified by match to protein family HMM PF01467; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; match to protein family HMM TIGR00125; riboflavin biosynthesis protein RibF complement(1878353..1879273) Persephonella marina EX-H1 7675115 YP_002731724.1 CDS recX NC_012440.1 1879270 1879689 R identified by match to protein family HMM PF02631; regulatory protein RecX complement(1879270..1879689) Persephonella marina EX-H1 7675415 YP_002731725.1 CDS PERMA_1972 NC_012440.1 1879686 1880807 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein complement(1879686..1880807) Persephonella marina EX-H1 7675595 YP_002731726.1 CDS recA NC_012440.1 1880826 1881842 R identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012; protein RecA complement(1880826..1881842) Persephonella marina EX-H1 7676088 YP_002731727.1 CDS gatC NC_012440.1 1881866 1882156 R identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135; glutamyl-tRNA(Gln) amidotransferase, C subunit complement(1881866..1882156) Persephonella marina EX-H1 7675387 YP_002731728.1 CDS topA NC_012440.1 1882327 1884369 R identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01051; DNA topoisomerase I complement(1882327..1884369) Persephonella marina EX-H1 7675814 YP_002731729.1 CDS PERMA_1976 NC_012440.1 1884372 1885055 R identified by match to protein family HMM PF01507; match to protein family HMM PF06508; match to protein family HMM TIGR00364; ExsB protein complement(1884372..1885055) Persephonella marina EX-H1 7674991 YP_002731730.1 CDS PERMA_1977 NC_012440.1 1885398 1886291 R identified by match to protein family HMM PF01551; peptidase, M23/M37 family complement(1885398..1886291) Persephonella marina EX-H1 7675354 YP_002731731.1 CDS prfB NC_012440.1 1886294 1887406 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(1886294..1887406) Persephonella marina EX-H1 7676091 YP_002731732.1 CDS PERMA_1979 NC_012440.1 1887485 1887874 R identified by Glimmer3; hypothetical protein complement(1887485..1887874) Persephonella marina EX-H1 7675187 YP_002731733.1 CDS PERMA_1980 NC_012440.1 1887887 1889053 R identified by match to protein family HMM PF02636; hypothetical protein complement(1887887..1889053) Persephonella marina EX-H1 7675429 YP_002731734.1 CDS PERMA_1981 NC_012440.1 1889112 1889420 D nuclease 1889112..1889420 Persephonella marina EX-H1 7674493 YP_002731735.1 CDS glmS NC_012440.1 1889465 1891276 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1889465..1891276 Persephonella marina EX-H1 7674903 YP_002731736.1 CDS sat NC_012440.1 1891507 1892667 D identified by match to protein family HMM PF01747; match to protein family HMM TIGR00339; sulfate adenylyltransferase 1891507..1892667 Persephonella marina EX-H1 7676137 YP_002731737.1 CDS PERMA_1984 NC_012440.1 1892755 1893390 D hypothetical protein 1892755..1893390 Persephonella marina EX-H1 7676195 YP_002731738.1 CDS PERMA_1985 NC_012440.1 1893394 1893702 D identified by match to protein family HMM PF01909; DNA polymerase, beta domain protein region 1893394..1893702 Persephonella marina EX-H1 7675022 YP_002731739.1 CDS PERMA_1986 NC_012440.1 1893928 1894170 D identified by match to protein family HMM PF01909; DNA polymerase, beta domain protein region 1893928..1894170 Persephonella marina EX-H1 7674410 YP_002731740.1 CDS cysQ NC_012440.1 1894210 1895019 D identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase 1894210..1895019 Persephonella marina EX-H1 7674356 YP_002731741.1 CDS PERMA_1988 NC_012440.1 1895009 1896769 D identified by match to protein family HMM PF02080; match to protein family HMM PF03600; match to protein family HMM PF06808; TrkA-C domain protein 1895009..1896769 Persephonella marina EX-H1 7674835 YP_002731742.1 CDS cysC NC_012440.1 1896785 1897399 D identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455; adenylylsulfate kinase 1896785..1897399 Persephonella marina EX-H1 7674982 YP_002731743.1 CDS PERMA_1990 NC_012440.1 1897411 1897722 D identified by match to protein family HMM PF01909; DNA polymerase, beta domain protein region 1897411..1897722 Persephonella marina EX-H1 7676161 YP_002731744.1 CDS PERMA_1991 NC_012440.1 1897728 1898195 D hypothetical protein 1897728..1898195 Persephonella marina EX-H1 7675601 YP_002731745.1 CDS PERMA_1992 NC_012440.1 1898209 1898445 D identified by Glimmer3; hypothetical protein 1898209..1898445 Persephonella marina EX-H1 7675170 YP_002731746.1 CDS rfbF NC_012440.1 1898465 1899238 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623; glucose-1-phosphate cytidylyltransferase 1898465..1899238 Persephonella marina EX-H1 7674254 YP_002731747.1 CDS PERMA_1994 NC_012440.1 1899243 1900139 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; CDP-abequose synthase 1899243..1900139 Persephonella marina EX-H1 7675647 YP_002731748.1 CDS rfbG NC_012440.1 1900120 1901229 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622; CDP-glucose 4,6-dehydratase 1900120..1901229 Persephonella marina EX-H1 7674336 YP_002731749.1 CDS PERMA_1996 NC_012440.1 1901244 1902665 D identified by match to protein family HMM PF01041; match to protein family HMM PF01053; DegT/DnrJ/EryC1/StrS aminotransferase family enzyme 1901244..1902665 Persephonella marina EX-H1 7674581 YP_002731750.1 CDS PERMA_1997 NC_012440.1 1902666 1903688 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; CDP-paratose 2-epimerase (CDP-tyvelose 2-epimerase) 1902666..1903688 Persephonella marina EX-H1 7675434 YP_002731751.1 CDS PERMA_1998 NC_012440.1 1903708 1904706 D identified by match to protein family HMM PF00535; O antigen biosynthesis abequosyltransferase RfbV 1903708..1904706 Persephonella marina EX-H1 7675085 YP_002731752.1 CDS PERMA_1999 NC_012440.1 1904711 1905997 D identified by match to protein family HMM PF01554; match to protein family HMM PF01943; polysaccharide biosynthesis protein 1904711..1905997 Persephonella marina EX-H1 7675729 YP_002731753.1 CDS PERMA_2000 NC_012440.1 1905994 1907334 D identified by match to protein family HMM PF04932; O-Antigen Polymerase family protein 1905994..1907334 Persephonella marina EX-H1 7675616 YP_002731754.1 CDS PERMA_2001 NC_012440.1 1907303 1908124 D identified by match to protein family HMM PF00685; sulfotransferase 1907303..1908124 Persephonella marina EX-H1 7676004 YP_002731755.1 CDS gmd NC_012440.1 1908252 1909277 D identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 1908252..1909277 Persephonella marina EX-H1 7674990 YP_002731756.1 CDS PERMA_2003 NC_012440.1 1909285 1910394 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 1909285..1910394 Persephonella marina EX-H1 7674965 YP_002731757.1 CDS PERMA_2004 NC_012440.1 1910442 1911872 D identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1910442..1911872 Persephonella marina EX-H1 7675573 YP_002731758.1 CDS PERMA_2005 NC_012440.1 1911999 1912217 D hypothetical protein 1911999..1912217 Persephonella marina EX-H1 7676190 YP_002731759.1 CDS PERMA_2006 NC_012440.1 1912218 1912619 D identified by match to protein family HMM PF01850; PIN 1912218..1912619 Persephonella marina EX-H1 7675427 YP_002731760.1 CDS galE NC_012440.1 1912782 1913756 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 1912782..1913756 Persephonella marina EX-H1 7674546 YP_002731761.1 CDS PERMA_2008 NC_012440.1 1913840 1915237 D identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025; UDP-phosphate galactose phosphotransferase 1913840..1915237 Persephonella marina EX-H1 7674870 YP_002731762.1 CDS PERMA_2009 NC_012440.1 1915234 1915731 D hypothetical protein 1915234..1915731 Persephonella marina EX-H1 7676060 YP_002731763.1 CDS PERMA_2010 NC_012440.1 1915701 1916510 D identified by match to protein family HMM PF00753; beta-lactamase domain protein 1915701..1916510 Persephonella marina EX-H1 7675140 YP_002731764.1 CDS PERMA_2011 NC_012440.1 1916495 1917685 D hypothetical protein 1916495..1917685 Persephonella marina EX-H1 7675974 YP_002731765.1 CDS PERMA_2012 NC_012440.1 1917711 1918325 R hypothetical protein complement(1917711..1918325) Persephonella marina EX-H1 7675848 YP_002731766.1 CDS PERMA_2013 NC_012440.1 1918752 1919165 D identified by match to protein family HMM PF08780; match to protein family HMM TIGR01987; nucleotidyltransferase substrate binding protein, family 1918752..1919165 Persephonella marina EX-H1 7675731 YP_002731767.1 CDS PERMA_2014 NC_012440.1 1919229 1919765 D identified by match to protein family HMM PF05685; hypothetical protein 1919229..1919765 Persephonella marina EX-H1 7676093 YP_002731768.1 CDS folK NC_012440.1 1919916 1920401 R identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(1919916..1920401) Persephonella marina EX-H1 7674928 YP_002731769.1 CDS PERMA_2017 NC_012440.1 1920420 1921703 D identified by match to protein family HMM PF01476; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1920420..1921703 Persephonella marina EX-H1 7675117 YP_002731770.1 CDS PERMA_2018 NC_012440.1 1921704 1922090 R lipoprotein complement(1921704..1922090) Persephonella marina EX-H1 7674637 YP_002731771.1 CDS PERMA_2019 NC_012440.1 1922224 1922760 D identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) 1922224..1922760 Persephonella marina EX-H1 7674556 YP_002731772.1 CDS PERMA_2020 NC_012440.1 1922747 1923298 D identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242; tellurite resistance protein TehB 1922747..1923298 Persephonella marina EX-H1 7675524 YP_002731773.1 CDS PERMA_2022 NC_012440.1 1923313 1923612 D identified by Glimmer3; hypothetical protein 1923313..1923612 Persephonella marina EX-H1 7674492 YP_002731774.1 CDS PERMA_2021 NC_012440.1 1923606 1925339 R identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; competence protein complement(1923606..1925339) Persephonella marina EX-H1 7674618 YP_002731775.1 CDS PERMA_2023 NC_012440.1 1925455 1926450 R hypothetical protein complement(1925455..1926450) Persephonella marina EX-H1 7675289 YP_002731776.1 CDS PERMA_2024 NC_012440.1 1926500 1927798 R identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter NrgA (Membrane protein nrgA) (Protein amtB) complement(1926500..1927798) Persephonella marina EX-H1 7675157 YP_002731777.1 CDS PERMA_2025 NC_012440.1 1927830 1928168 R identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II complement(1927830..1928168) Persephonella marina EX-H1 7675870 YP_002731778.1 CDS groEL NC_012440.1 1928394 1930031 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(1928394..1930031) Persephonella marina EX-H1 7674964 YP_002731779.1 CDS groS_2 NC_012440.1 1930060 1930227 R identified by match to protein family HMM PF00166; chaperonin GroS complement(1930060..1930227) Persephonella marina EX-H1 7675297 PERMA_0201 tRNA PERMA_0201 NC_012440.1 181280 181356 D tRNA-Arg 181280..181356 Persephonella marina EX-H1 7675483 PERMA_0206 tRNA PERMA_0206 NC_012440.1 182744 182821 D tRNA-Ala 182744..182821 Persephonella marina EX-H1 7675012 PERMA_0253 tRNA PERMA_0253 NC_012440.1 227721 227809 R tRNA-Leu complement(227721..227809) Persephonella marina EX-H1 7674955 PERMA_0278 tRNA PERMA_0278 NC_012440.1 251164 251244 R tRNA-Asp complement(251164..251244) Persephonella marina EX-H1 7675868 PERMA_0279 tRNA PERMA_0279 NC_012440.1 251248 251326 R tRNA-Val complement(251248..251326) Persephonella marina EX-H1 7674945 PERMA_0383 tRNA PERMA_0383 NC_012440.1 345175 345269 D tRNA-Ser 345175..345269 Persephonella marina EX-H1 7675135 PERMA_0398 tRNA PERMA_0398 NC_012440.1 358169 358247 R tRNA-Met complement(358169..358247) Persephonella marina EX-H1 7675264 PERMA_0512 tRNA PERMA_0512 NC_012440.1 464910 464998 R tRNA-Leu complement(464910..464998) Persephonella marina EX-H1 7675823 PERMA_0672 tRNA PERMA_0672 NC_012440.1 631608 631682 R tRNA-Cys complement(631608..631682) Persephonella marina EX-H1 7675259 PERMA_0765 tRNA PERMA_0765 NC_012440.1 723040 723117 D tRNA-Met 723040..723117 Persephonella marina EX-H1 7675920 PERMA_0955 tRNA PERMA_0955 NC_012440.1 911767 911853 D tRNA-Leu 911767..911853 Persephonella marina EX-H1 7675873 PERMA_1138 tRNA PERMA_1138 NC_012440.1 1092792 1092868 D tRNA-Ile 1092792..1092868 Persephonella marina EX-H1 7674948 PERMA_1139 tRNA PERMA_1139 NC_012440.1 1092879 1092956 D tRNA-Ala 1092879..1092956 Persephonella marina EX-H1 7674939 PERMA_1169 tRNA PERMA_1169 NC_012440.1 1120032 1120109 D tRNA-Lys 1120032..1120109 Persephonella marina EX-H1 7675625 PERMA_1170 tRNA PERMA_1170 NC_012440.1 1120130 1120209 D tRNA-Glu 1120130..1120209 Persephonella marina EX-H1 7674931 PERMA_1171 tRNA PERMA_1171 NC_012440.1 1120217 1120295 D tRNA-Val 1120217..1120295 Persephonella marina EX-H1 7675640 PERMA_1176 tRNA PERMA_1176 NC_012440.1 1122245 1122322 D tRNA-Thr 1122245..1122322 Persephonella marina EX-H1 7674528 PERMA_1177 tRNA PERMA_1177 NC_012440.1 1122330 1122417 D tRNA-Tyr 1122330..1122417 Persephonella marina EX-H1 7674932 PERMA_1178 tRNA PERMA_1178 NC_012440.1 1122427 1122502 D tRNA-Gly 1122427..1122502 Persephonella marina EX-H1 7674915 PERMA_1179 tRNA PERMA_1179 NC_012440.1 1122606 1122681 D tRNA-Thr 1122606..1122681 Persephonella marina EX-H1 7674921 PERMA_1182 tRNA PERMA_1182 NC_012440.1 1124091 1124167 D tRNA-Trp 1124091..1124167 Persephonella marina EX-H1 7674912 PERMA_1287 tRNA PERMA_1287 NC_012440.1 1210450 1210525 D tRNA-Gln 1210450..1210525 Persephonella marina EX-H1 7675246 PERMA_1303 tRNA PERMA_1303 NC_012440.1 1220875 1220952 D tRNA-His 1220875..1220952 Persephonella marina EX-H1 7675194 PERMA_1317 tRNA PERMA_1317 NC_012440.1 1239756 1239844 D tRNA-Leu 1239756..1239844 Persephonella marina EX-H1 7675436 PERMA_1318 tRNA PERMA_1318 NC_012440.1 1239869 1239957 D tRNA-Leu 1239869..1239957 Persephonella marina EX-H1 7674925 PERMA_1381 tRNA PERMA_1381 NC_012440.1 1308227 1308304 R tRNA-Pro complement(1308227..1308304) Persephonella marina EX-H1 7674475 PERMA_1510 tRNA PERMA_1510 NC_012440.1 1452794 1452872 D tRNA-Arg 1452794..1452872 Persephonella marina EX-H1 7675353 PERMA_1604 tRNA PERMA_1604 NC_012440.1 1555018 1555095 R tRNA-Gly complement(1555018..1555095) Persephonella marina EX-H1 7676036 PERMA_1681 tRNA PERMA_1681 NC_012440.1 1631062 1631156 R tRNA-Ser complement(1631062..1631156) Persephonella marina EX-H1 7674198 PERMA_1771 tRNA PERMA_1771 NC_012440.1 1714904 1714982 R tRNA-Trp complement(1714904..1714982) Persephonella marina EX-H1 7674238 PERMA_1828 tRNA PERMA_1828 NC_012440.1 1755026 1755118 R tRNA-Ser complement(1755026..1755118) Persephonella marina EX-H1 7674468 PERMA_1939 tRNA PERMA_1939 NC_012440.1 1852232 1852309 R tRNA-Ala complement(1852232..1852309) Persephonella marina EX-H1 7675038 PERMA_1940 tRNA PERMA_1940 NC_012440.1 1852320 1852396 R tRNA-Ile complement(1852320..1852396) Persephonella marina EX-H1 7674935 PERMA_1942 tRNA PERMA_1942 NC_012440.1 1854216 1854292 R tRNA-Met complement(1854216..1854292) Persephonella marina EX-H1 7674949 PERMA_1943 tRNA PERMA_1943 NC_012440.1 1854340 1854416 R tRNA-Arg complement(1854340..1854416) Persephonella marina EX-H1 7674920 PERMA_1944 tRNA PERMA_1944 NC_012440.1 1854435 1854512 R tRNA-Pro complement(1854435..1854512) Persephonella marina EX-H1 7674936 PERMA_1946 tRNA PERMA_1946 NC_012440.1 1855188 1855265 R tRNA-Asn complement(1855188..1855265) Persephonella marina EX-H1 7675408 PERMA_2016 tRNA PERMA_2016 NC_012440.1 1919839 1919916 D tRNA-Phe 1919839..1919916 Persephonella marina EX-H1 7674229 PERMA_1137 rRNA PERMA_1137 NC_012440.1 1091168 1092712 D 16S ribosomal RNA 1091168..1092712 Persephonella marina EX-H1 7674562 PERMA_2028 rRNA PERMA_2028 NC_012440.1 1093034 1096010 D 23S ribosomal RNA 1093034..1096010 Persephonella marina EX-H1 9679495 PERMA_1143 rRNA rrf_1 NC_012440.1 1096055 1096171 D 5S ribosomal RNA 1096055..1096171 Persephonella marina EX-H1 7674904 PERMA_1935 rRNA rrf_2 NC_012440.1 1849017 1849133 R 5S ribosomal RNA complement(1849017..1849133) Persephonella marina EX-H1 7674986 PERMA_2029 rRNA PERMA_2029 NC_012440.1 1849180 1852156 R 23S ribosomal RNA complement(1849180..1852156) Persephonella marina EX-H1 9679496 PERMA_1941 rRNA PERMA_1941 NC_012440.1 1852476 1854020 R 16S ribosomal RNA complement(1852476..1854020) Persephonella marina EX-H1 7674940