-- dump date 20140619_231955 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 218491000001 SEQ_END SEQ_END NC_004547.2 5064019 5064019 DR NC_004547.2; contig end 5064019..5064019 Pectobacterium atrosepticum SCRI1043 YP_048133.1 CDS mioC NC_004547.2 32 475 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(32..475) Pectobacterium atrosepticum SCRI1043 2885612 YP_048134.1 CDS asnC NC_004547.2 565 1026 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(565..1026) Pectobacterium atrosepticum SCRI1043 2884106 YP_048135.1 CDS asnA NC_004547.2 1179 2171 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1179..2171 Pectobacterium atrosepticum SCRI1043 2884104 YP_048136.1 CDS yieM NC_004547.2 2168 3646 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein complement(2168..3646) Pectobacterium atrosepticum SCRI1043 2885562 YP_048137.1 CDS ECA0005 NC_004547.2 3652 5151 R interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA complement(3652..5151) Pectobacterium atrosepticum SCRI1043 2885556 YP_048138.1 CDS trkD NC_004547.2 5629 7497 D Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 5629..7497 Pectobacterium atrosepticum SCRI1043 2883739 YP_048139.1 CDS qseC NC_004547.2 7668 9017 R Similar to Escherichia coli sensor protein QseC SWALL:QSEC_ECOLI (SWALL:P40719) (449 aa) fasta scores: E(): 7.4e-94, 56.15% id in 447 aa; sensor protein QseC complement(7668..9017) Pectobacterium atrosepticum SCRI1043 2882682 YP_048140.1 CDS qseB NC_004547.2 9014 9676 R Similar to Escherichia coli transcriptional regulatory protein QseB SWALL:QSEB_ECOLI (SWALL:P52076) (219 aa) fasta scores: E(): 3.1e-59, 68.34% id in 218 aa; two-component system response regulator complement(9014..9676) Pectobacterium atrosepticum SCRI1043 2882681 YP_048141.1 CDS ECA0009 NC_004547.2 9921 10316 D Similar to Salmonella typhimurium, and Salmonella typhi outer membrane proteinYgiW or stm3176 or sty3353 SWALL:Q8XGT5 (EMBL:AE008846) (130 aa) fasta scores: E(): 1.8e-27, 63.35% id in 131 aa, and to Yersinia pestis exported protein ypo3027 or y1455 SWALL:Q8ZCG4 (EMBL:AJ414155) (137 aa) fasta scores: E(): 1.4e-20, 50.73% id in 136 aa; hypothetical protein 9921..10316 Pectobacterium atrosepticum SCRI1043 2885557 YP_048142.1 CDS rbsD NC_004547.2 10521 10940 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 10521..10940 Pectobacterium atrosepticum SCRI1043 2884521 YP_048143.1 CDS rbsA NC_004547.2 10948 12453 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 10948..12453 Pectobacterium atrosepticum SCRI1043 2884518 YP_048144.1 CDS rbsC NC_004547.2 12461 13429 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 12461..13429 Pectobacterium atrosepticum SCRI1043 2884520 YP_048145.1 CDS rbsB NC_004547.2 13455 14342 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 13455..14342 Pectobacterium atrosepticum SCRI1043 2884519 YP_048146.1 CDS rbsK NC_004547.2 14538 15464 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 14538..15464 Pectobacterium atrosepticum SCRI1043 2884515 YP_048147.1 CDS rbsR NC_004547.2 15468 16463 D DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 15468..16463 Pectobacterium atrosepticum SCRI1043 2884516 YP_048148.1 CDS mobB NC_004547.2 22163 22684 R in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein B complement(22163..22684) Pectobacterium atrosepticum SCRI1043 2885444 YP_048149.1 CDS mobA NC_004547.2 22674 23264 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(22674..23264) Pectobacterium atrosepticum SCRI1043 2885443 YP_048150.1 CDS ECA0018 NC_004547.2 23466 23735 D Similar to Pectobacterium carotovorum subsp. carotovorum YihD SWALL:Q9RB12 (EMBL:AF146615) (89 aa) fasta scores: E(): 6.6e-33, 98.87% id in 89 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein YihD SWALL:YIHD_ECOLI (SWALL:P32126) (89 aa) fasta scores: E(): 1.8e-26, 80.89% id in 89 aa; hypothetical protein 23466..23735 Pectobacterium atrosepticum SCRI1043 2885558 YP_048151.1 CDS ECA0019 NC_004547.2 23805 24800 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 23805..24800 Pectobacterium atrosepticum SCRI1043 2885524 YP_048152.1 CDS dsbA NC_004547.2 24825 25448 D Similar to Erwinia carotovora thiol:disulfide interchange protein DsbA precursor SWALL:DSBA_ERWCA (SWALL:Q9RB10) (207 aa) fasta scores: E(): 1.2e-76, 98.55% id in 207 aa; periplasmic protein disulfide isomerase I 24825..25448 Pectobacterium atrosepticum SCRI1043 2882414 YP_048153.1 CDS polA NC_004547.2 25826 28615 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 25826..28615 Pectobacterium atrosepticum SCRI1043 2883189 YP_048154.1 CDS engB NC_004547.2 29034 29669 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(29034..29669) Pectobacterium atrosepticum SCRI1043 2884918 YP_048155.1 CDS ECA0024 NC_004547.2 29873 30427 D Similar to Yersinia pestis hypothetical protein SWALL:Q8ZJR9 (EMBL:AJ414141) (188 aa) fasta scores: E(): 7.4e-26, 58.96% id in 173 aa, and to Escherichia coli O157:H7 orf, hypothetical protein SWALL:Q8X8G9 (EMBL:AE005617) (168 aa) fasta scores: E(): 2e-12, 53.29% id in 167 aa; hypothetical protein 29873..30427 Pectobacterium atrosepticum SCRI1043 2885525 YP_048156.1 CDS hemN NC_004547.2 30749 32122 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 30749..32122 Pectobacterium atrosepticum SCRI1043 2882213 YP_048157.1 CDS glnG NC_004547.2 32447 33859 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) complement(32447..33859) Pectobacterium atrosepticum SCRI1043 2881769 YP_048158.1 CDS glnL NC_004547.2 33868 34917 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) complement(33868..34917) Pectobacterium atrosepticum SCRI1043 2881775 YP_048159.1 CDS glnA NC_004547.2 35258 36667 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(35258..36667) Pectobacterium atrosepticum SCRI1043 2881761 YP_048160.1 CDS typA NC_004547.2 37037 38860 D Similar to Escherichia coli GTP-binding protein TypA or BipA or b3871 SWALL:TYPA_ECOLI (SWALL:P32132) (591 aa) fasta scores: E(): 1.1e-189, 90.18% id in 591 aa. Found to be a virulence regulator in an enteropathogenic Escherichia coli (PMID: 9622352).; GTP-binding regulatory protein 37037..38860 Pectobacterium atrosepticum SCRI1043 2884222 YP_048161.1 CDS ECA0031 NC_004547.2 39022 39633 D Similar to Yersinia pestis hypothetical protein SWALL:AAM87347 (EMBL:AJ414141) (196 aa) fasta scores: E(): 4.3e-55, 71.42% id in 196 aa, and to Escherichia coli hypothetical protein YihX SWALL:YIHX_ECOLI (SWALL:P32145) (199 aa) fasta scores: E(): 2.8e-51, 64.61% id in 195 aa; phosphatase 39022..39633 Pectobacterium atrosepticum SCRI1043 2885526 YP_048162.1 CDS dtd NC_004547.2 39698 40135 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 39698..40135 Pectobacterium atrosepticum SCRI1043 2881855 YP_048163.1 CDS ECA0033 NC_004547.2 40213 41199 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YiiD SWALL:YIID_ECOLI (SWALL:P32148) (329 aa) fasta scores: E(): 1.6e-108, 82.31% id in 311 aa, and to Salmonella typhimurium, and Salmonella typhi acetyltransferase YiiD SWALL:Q8XF59 (EMBL:AE008888) (329 aa) fasta scores: E(): 2.7e-107, 81.34% id in 311 aa; GNAT family acetyltransferase 40213..41199 Pectobacterium atrosepticum SCRI1043 2885521 YP_048164.1 CDS ECA0034 NC_004547.2 41509 43200 R Similar to Yersinia pestis possible exported protein ypo0033 SWALL:Q8ZJQ9 (EMBL:AJ414141) (569 aa) fasta scores: E(): 1.9e-128, 55.37% id in 558 aa, and to Escherichia coli O6 hypothetical protein YicH SWALL:AAN82916 (EMBL:AE016769) (577 aa) fasta scores: E(): 5.3e-123, 48.92% id in 558 aa; hypothetical protein complement(41509..43200) Pectobacterium atrosepticum SCRI1043 2885522 YP_048165.1 CDS ECA0035 NC_004547.2 43358 44746 R Similar to Yersinia pestis membrane permease ypo0034 SWALL:Q8ZJQ8 (EMBL:AJ414141) (461 aa) fasta scores: E(): 1.8e-149, 86.98% id in 461 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 purine permease YicE SWALL:YICE_ECOLI (SWALL:P27432) (463 aa) fasta scores: E(): 3.4e-148, 85.65% id in 460 aa; purine permease complement(43358..44746) Pectobacterium atrosepticum SCRI1043 2885523 YP_048166.1 CDS recG NC_004547.2 45107 47188 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(45107..47188) Pectobacterium atrosepticum SCRI1043 2885293 YP_048167.1 CDS trmH NC_004547.2 47188 47880 R specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase complement(47188..47880) Pectobacterium atrosepticum SCRI1043 2884246 YP_048168.1 CDS spoT NC_004547.2 47886 49985 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri guanosine-3',5'-bis(diphosphate) 3'- pyrophosphohydrolase SpoTor b3650 or z5076 or ecs4525 or sf3690 SWALL:SPOT_ECOLI (SWALL:P17580) (702 aa) fasta scores: E(): 0, 90.74% id in 702 aa; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase complement(47886..49985) Pectobacterium atrosepticum SCRI1043 2884368 YP_048169.1 CDS rpoZ NC_004547.2 50004 50279 R promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(50004..50279) Pectobacterium atrosepticum SCRI1043 2884481 YP_048170.1 CDS gmk NC_004547.2 50333 50956 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(50333..50956) Pectobacterium atrosepticum SCRI1043 2881491 YP_048171.1 CDS ECA0041 NC_004547.2 50958 51185 D No significant database matches.; hypothetical protein 50958..51185 Pectobacterium atrosepticum SCRI1043 2885518 YP_048172.1 CDS ligB NC_004547.2 51400 53091 D this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 51400..53091 Pectobacterium atrosepticum SCRI1043 2885519 YP_048173.1 CDS ECA0044 NC_004547.2 53350 55035 D catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase 53350..55035 Pectobacterium atrosepticum SCRI1043 2885520 YP_048174.1 CDS ECA0045 NC_004547.2 55765 56313 D Similar to Salmonella typhimurium resistance to complement killing Rck or pslt009 SWALL:Q04817 (EMBL:L08613) (185 aa) fasta scores: E(): 7.9e-27, 44.68% id in 188 aa, and to Salmonella typhimurium virulence membrane protein PagC precursor or stm1246 SWALL:PAGC_SALTY (SWALL:P23988) (185 aa) fasta scores: E(): 3.5e-26, 45.05% id in 182 aa; virulence-associated outer membrane protein 55765..56313 Pectobacterium atrosepticum SCRI1043 2885511 YP_048175.1 CDS ECA0046 NC_004547.2 56357 57964 R Similar to Escherichia coli Rtn protein or b2176 SWALL:RTN_ECOLI (SWALL:P76446) (518 aa) fasta scores: E(): 6.1e-42, 30.6% id in 513 aa, and to Salmonella typhi Rtn protein sty0376 SWALL:Q8Z923 (EMBL:AL627266) (524 aa) fasta scores: E(): 1.8e-67, 35.68% id in 524 aa. In E.coli it's found to be involved in resistance to phages N4 and lambda.; signaling membrane protein complement(56357..57964) Pectobacterium atrosepticum SCRI1043 2885512 YP_048176.1 CDS ECA0047 NC_004547.2 58054 59253 R Similar to Yersinia pestis hypothetical protein Ypo3966 SWALL:Q8ZA52 (EMBL:AJ414160) (398 aa) fasta scores: E(): 6.5e-123, 79.74% id in 395 aa, and to Salmonella typhi exported protein sty4215 SWALL:Q8Z267 (EMBL:AL627281) (400 aa) fasta scores: E(): 1.4e-118, 75.94% id in 395 aa; hypothetical protein complement(58054..59253) Pectobacterium atrosepticum SCRI1043 2885513 YP_048177.1 CDS pitA NC_004547.2 59530 61035 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 low-affinity inorganic phosphate transporter 1 PitA or Pit or b3493 or c4291 or z4893 or ecs4365 SWALL:PITA_ECOLI (SWALL:P37308) (499 aa) fasta scores: E(): 1.3e-136, 70.37% id in 503 aa; low-affinity inorganic phosphate transporter 59530..61035 Pectobacterium atrosepticum SCRI1043 2883577 YP_048178.1 CDS uspB NC_004547.2 61234 61569 R ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB complement(61234..61569) Pectobacterium atrosepticum SCRI1043 2882957 YP_048179.1 CDS uspA NC_004547.2 62108 62545 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri universal stress protein A UspA or b3495 or c4293 or z4895 or ecs4367 or sf3526 SWALL:USPA_ECOLI (SWALL:P28242) (143 aa) fasta scores: E(): 6.7e-47, 94.36% id in 142 aa; universal stress protein A 62108..62545 Pectobacterium atrosepticum SCRI1043 2882963 YP_048180.1 CDS gdhA NC_004547.2 62838 64181 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 62838..64181 Pectobacterium atrosepticum SCRI1043 2881791 YP_048181.1 CDS ECA0052 NC_004547.2 64337 65650 D Similar to Pseudomonas aeruginosa hypothetical protein Pa4186 SWALL:Q9HWJ5 (EMBL:AE004835) (439 aa) fasta scores: E(): 1.9e-60, 39.58% id in 432 aa; hypothetical protein 64337..65650 Pectobacterium atrosepticum SCRI1043 2885542 YP_048182.1 CDS ECA0053 NC_004547.2 65657 67552 R Similar to Vibrio cholerae 2`,3`-cyclic-nucleotide 2`-phosphodiesterase, vc2416 SWALL:Q9KPF2 (EMBL:AE004311) (634 aa) fasta scores: E(): 9.2e-161, 66.4% id in 634 aa; phosphodiesterase complement(65657..67552) Pectobacterium atrosepticum SCRI1043 2885543 YP_048183.1 CDS ECA0054 NC_004547.2 67694 68440 R predicted SAM-dependent methyltransferase; methyltransferase complement(67694..68440) Pectobacterium atrosepticum SCRI1043 2885544 YP_048184.1 CDS prlC NC_004547.2 68437 70479 R Similar to Escherichia coli oligopeptidase A PrlC or OpdA or b3498 SWALL:OPDA_ECOLI (SWALL:P27298) (680 aa) fasta scores: E(): 0, 85.44% id in 680 aa; oligopeptidase A complement(68437..70479) Pectobacterium atrosepticum SCRI1043 2882449 YP_048185.1 CDS ECA0056 NC_004547.2 70800 73349 D Similar to Bordetella avium BhuR SWALL:Q8L1U7 (EMBL:AY095952) (855 aa) fasta scores: E(): 8.3e-14, 23.68% id in 874 aa, and to Pasteurella multocida HemR SWALL:Q9CN63 (EMBL:AE006093) (742 aa) fasta scores: E(): 1.5e-143, 51.04% id in 717 aa; TonB-dependent heme receptor 70800..73349 Pectobacterium atrosepticum SCRI1043 2885545 YP_048186.1 CDS ECA0057 NC_004547.2 73530 74042 D Similar to Escherichia coli probable RNA polymerase sigma factor FecI or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 2.2e-25, 46.38% id in 166 aa; ECF family RNA polymerase sigma factor 73530..74042 Pectobacterium atrosepticum SCRI1043 2885546 YP_048187.1 CDS ECA0058 NC_004547.2 74039 75028 D Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 3.1e-33, 36.04% id in 319 aa; transmembrane sensor 74039..75028 Pectobacterium atrosepticum SCRI1043 2885547 YP_048188.1 CDS ECA0059 NC_004547.2 75230 76051 D Similar to Yersinia pestis membrane protein ypo3918 SWALL:Q8ZA93 (EMBL:AJ414159) (267 aa) fasta scores: E(): 1.7e-17, 34.7% id in 268 aa, and to Shigella flexneri, and Escherichia coli CjrB SWALL:Q933Q6 (EMBL:AF283292) (258 aa) fasta scores: E(): 7.9e-14, 30.59% id in 268 aa, and to Pseudomonas putida TonB SWALL:Q93PQ7 (EMBL:AF315582) (243 aa) fasta scores: E(): 1.5e-10, 31.74% id in 252 aa; TonB-like protein 75230..76051 Pectobacterium atrosepticum SCRI1043 2885539 YP_048189.1 CDS ECA0060 NC_004547.2 76062 76355 R Similar to Shigella flexneri conserved hypothetical protein YghW SWALL:AAN44523 (EMBL:AE015317) (95 aa) fasta scores: E(): 3.8e-17, 47.25% id in 91 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YghW SWALL:AAN82179 (EMBL:U28377) (95 aa) fasta scores: E(): 3.8e-17, 47.25% id in 91 aa; hypothetical protein complement(76062..76355) Pectobacterium atrosepticum SCRI1043 2885540 YP_048190.1 CDS ECA0061 NC_004547.2 76671 77513 D Similar to Yersinia pestis hypothetical protein ypo3976 SWALL:Q8ZA44 (EMBL:AJ414160) (280 aa) fasta scores: E(): 4.8e-91, 80.35% id in 280 aa, and to Escherichia coli hypothetical protein YhiR SWALL:YHIR_ECOLI (SWALL:P37634) (280 aa) fasta scores: E(): 3.2e-88, 77.85% id in 280 aa; hypothetical protein 76671..77513 Pectobacterium atrosepticum SCRI1043 2885541 YP_048191.1 CDS gor NC_004547.2 77642 78994 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 77642..78994 Pectobacterium atrosepticum SCRI1043 2885364 YP_048192.1 CDS ECA0063 NC_004547.2 79098 79385 R Similar to Escherichia coli Orf43 protein SWALL:Q9S123 (EMBL:AB024946) (95 aa) fasta scores: E(): 8.3e-33, 89.47% id in 95 aa; hypothetical protein complement(79098..79385) Pectobacterium atrosepticum SCRI1043 2885505 YP_048193.1 CDS ECA0064 NC_004547.2 79382 79633 R Similar to Escherichia coli incf plasmid repfib replicon SWALL:Q60256 (EMBL:M26308) (83 aa) fasta scores: E(): 6.4e-27, 87.95% id in 83 aa, and to Escherichia coli Orf44 protein SWALL:Q9S122 (EMBL:AB024946) (83 aa) fasta scores: E(): 8.8e-27, 87.95% id in 83 aa; hypothetical protein complement(79382..79633) Pectobacterium atrosepticum SCRI1043 2885506 YP_048194.1 CDS ECA0065 NC_004547.2 79889 80794 D Similar to Pseudomonas aeruginosa hypothetical protein Pa2033 SWALL:Q9I282 (EMBL:AE004629) (302 aa) fasta scores: E(): 7.3e-48, 46.8% id in 297 aa, and to Corynebacterium glutamicum siderophore-interacting protein cgl0665 SWALL:Q8NSK6 (EMBL:AP005276) (299 aa) fasta scores: E(): 1.9e-29, 37.32% id in 292 aa, and to Escherichia coli hypothetical protein YqjH SWALL:YQJH_ECOLI (SWALL:Q46871) (254 aa) fasta scores: E(): 0.0064, 28.05% id in 303 aa; hypothetical protein 79889..80794 Pectobacterium atrosepticum SCRI1043 2885507 YP_048195.1 CDS dsbG NC_004547.2 80829 81584 R Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase complement(80829..81584) Pectobacterium atrosepticum SCRI1043 2885422 YP_048196.1 CDS ECA0067 NC_004547.2 81805 82428 D Similar to Caulobacter crescentus efflux protein, LysE family cc0456 SWALL:Q9AAY6 (EMBL:AE005719) (208 aa) fasta scores: E(): 1.4e-42, 56.25% id in 208 aa; amino acid transporter LysE 81805..82428 Pectobacterium atrosepticum SCRI1043 2882819 YP_048197.1 CDS ECA0068 NC_004547.2 82475 83347 R Similar to Pseudomonas aeruginosa probable transcriptional regulator pa3225 SWALL:Q9HZ15 (EMBL:AE004745) (309 aa) fasta scores: E(): 1.4e-30, 38.11% id in 286 aa, and to Escherichia coli hypothetical transcriptional regulator YeeY SWALL:YEEY_ECOLI (SWALL:P76369) (309 aa) fasta scores: E(): 7.8e-10, 28.34% id in 247 aa; LysR family transcriptional regulator complement(82475..83347) Pectobacterium atrosepticum SCRI1043 2882820 YP_048198.1 CDS padC NC_004547.2 83450 83959 D Similar to Bacillus subtilis phenolic acid decarboxylase PadC or Pad SWALL:PADC_BACSU (SWALL:O07006) (161 aa) fasta scores: E(): 5.6e-33, 53.16% id in 158 aa, and to Vibrio cholerae probable phenolic acid decarboxylase PadC or vc2240 SWALL:PADC_VIBCH (SWALL:Q9KPX2) (174 aa) fasta scores: E(): 3.2e-46, 63.41% id in 164 aa; phenolic acid decarboxylase 83450..83959 Pectobacterium atrosepticum SCRI1043 2881519 YP_048199.1 CDS ECA0070 NC_004547.2 84016 85152 R Similar to Corynebacterium glutamicum hypothetical protein Cgl2435 SWALL:Q8NMX8 (EMBL:AP005281) (411 aa) fasta scores: E(): 1e-33, 40.97% id in 288 aa, and to Corynebacterium efficiens conserved hypothetical protein ce2330 SWALL:BAC19140 (EMBL:AP005222) (414 aa) fasta scores: E(): 1.4e-33, 33.97% id in 418 aa; hypothetical protein complement(84016..85152) Pectobacterium atrosepticum SCRI1043 2882821 YP_048200.1 CDS ECA0071 NC_004547.2 85149 86183 R Similar to Bradyrhizobium japonicum Bll6902 protein SWALL:BAC52167 (EMBL:AP005960) (378 aa) fasta scores: E(): 3.4e-73, 58.99% id in 339 aa, and to Bradyrhizobium japonicum LuxA-like protein bll7033 SWALL:BAC52298 (EMBL:AP005960) (408 aa) fasta scores: E(): 3.7e-14, 28.77% id in 358 aa; monooxygenase complement(85149..86183) Pectobacterium atrosepticum SCRI1043 2882792 YP_048201.1 CDS ECA0072 NC_004547.2 86185 87882 R Similar to Corynebacterium glutamicum ABC-type transporter, duplicated ATPase component cgl2436 SWALL:Q8NMX7 (EMBL:AP005281) (547 aa) fasta scores: E(): 8.2e-93, 54.2% id in 535 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YejF SWALL:YEJF_ECOLI (SWALL:P33916) (529 aa) fasta scores: E(): 4.8e-65, 42.8% id in 528 aa; ABC transporter ATP-binding protein complement(86185..87882) Pectobacterium atrosepticum SCRI1043 2882793 YP_048202.1 CDS ECA0073 NC_004547.2 87879 88739 R Similar to Corynebacterium efficiens transport protein ce2332 SWALL:BAC19142 (EMBL:AP005222) (305 aa) fasta scores: E(): 2.3e-58, 62.22% id in 270 aa, and to Escherichia coli hypothetical ABC transporter permease protein YliD SWALL:YLID_ECOLI (SWALL:P75799) (303 aa) fasta scores: E(): 1.3e-33, 38.34% id in 266 aa; ABC transporter permease complement(87879..88739) Pectobacterium atrosepticum SCRI1043 2882794 YP_048203.1 CDS ECA0074 NC_004547.2 88736 89680 R Similar to Corynebacterium glutamicum ABC-type transporter, permease component cgl2438 SWALL:Q8NMX5 (EMBL:AP005281) (313 aa) fasta scores: E(): 3.9e-60, 55.15% id in 301 aa, and to Salmonella typhi hypothetical ABC transporter permease protein YliC SWALL:Q8Z862 (EMBL:AL627268) (306 aa) fasta scores: E(): 6.1e-30, 36.03% id in 308 aa; ABC transporter permease complement(88736..89680) Pectobacterium atrosepticum SCRI1043 2882862 YP_048204.1 CDS ECA0075 NC_004547.2 89707 91344 R Similar to Corynebacterium glutamicum ABC-type transporter, periplasmic component cgl2439 SWALL:Q8NMX4 (EMBL:AP005281) (569 aa) fasta scores: E(): 1.1e-87, 47.85% id in 535 aa, and to Corynebacterium efficiens peptide binding protein ce2334 SWALL:BAC19144 (EMBL:AP005222) (615 aa) fasta scores: E(): 1.6e-86, 47.29% id in 535 aa; ABC transporter substrate binding protein complement(89707..91344) Pectobacterium atrosepticum SCRI1043 2882863 YP_048205.1 CDS ECA0077 NC_004547.2 91666 92868 D Similar to Pyrococcus abyssi related beta-lactamase precursor Pbp SWALL:Q9V2D6 (EMBL:AJ248283) (447 aa) fasta scores: E(): 2.5e-14, 22.94% id in 340 aa, and to Bacillus cereus alkaline D-peptidase adP SWALL:P94288 (EMBL:D86380) (388 aa) fasta scores: E(): 1.7e-10, 29.52% id in 254 aa; hypothetical protein 91666..92868 Pectobacterium atrosepticum SCRI1043 2882864 YP_048206.2 CDS tkrA NC_004547.2 92960 93922 R Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase complement(92960..93922) Pectobacterium atrosepticum SCRI1043 2884280 YP_048207.1 CDS ECA0079 NC_004547.2 93967 94173 R No significant database matches. Possible false CDS.; hypothetical protein complement(93967..94173) Pectobacterium atrosepticum SCRI1043 2885481 YP_048208.1 CDS ECA0080 NC_004547.2 94276 96228 D Similar to Yersinia pestis methyl-accepting chemotaxis protein II Tar or Tsr SWALL:AAM87624 (EMBL:AJ414160) (649 aa) fasta scores: E(): 4e-72, 42.03% id in 659 aa, and to Escherichia coli methyl-accepting chemotaxis protein I Tsr SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 1.2e-55, 51.04% id in 384 aa; methyl-accepting chemotaxis protein 94276..96228 Pectobacterium atrosepticum SCRI1043 2885482 YP_048209.1 CDS ECA0081 NC_004547.2 96284 96727 R Similar to Yersinia pestis acetyltransferase ypo4075 SWALL:Q8Z9W4 (EMBL:AJ414160) (151 aa) fasta scores: E(): 1.8e-28, 51.37% id in 146 aa, and to Escherichia coli hypothetical acetyltransferase YiaC SWALL:YIAC_ECOLI (SWALL:P37664) (146 aa) fasta scores: E(): 2.2e-22, 45% id in 140 aa; hypothetical protein complement(96284..96727) Pectobacterium atrosepticum SCRI1043 2885483 YP_048210.1 CDS tag NC_004547.2 96724 97287 R Similar to Escherichia coli DNA-3-methyladenine glycosylase I Tag or b3549 SWALL:3MG1_ECOLI (SWALL:P05100) (187 aa) fasta scores: E(): 3.8e-53, 69.23% id in 182 aa; DNA-3-methyladenine glycosylase I complement(96724..97287) Pectobacterium atrosepticum SCRI1043 2884324 YP_048211.1 CDS ECA0083 NC_004547.2 97589 98332 D Similar to Pseudomonas putida conserved hypothetical protein pp5143 SWALL:AAN70708 (EMBL:AE016793) (260 aa) fasta scores: E(): 1e-36, 48.3% id in 236 aa; hypothetical protein 97589..98332 Pectobacterium atrosepticum SCRI1043 2885484 YP_048212.1 CDS glyQ NC_004547.2 98527 99441 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 98527..99441 Pectobacterium atrosepticum SCRI1043 2881489 YP_048213.1 CDS glyS NC_004547.2 99451 101520 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 99451..101520 Pectobacterium atrosepticum SCRI1043 2881490 YP_048214.1 CDS ECA0086 NC_004547.2 101812 102516 D Similar to Yersinia pestis exported protein ypo4070 SWALL:Q8Z9W8 (EMBL:AJ414160) (241 aa) fasta scores: E(): 1.3e-39, 49.11% id in 226 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YiaF SWALL:AAN45039 (EMBL:U00039) (276 aa) fasta scores: E(): 2.7e-33, 44.09% id in 220 aa; hypothetical protein 101812..102516 Pectobacterium atrosepticum SCRI1043 2885485 YP_048215.1 CDS mtlA NC_004547.2 102940 104847 D Similar to Escherichia coli PTS system, mannitol-specific IIabc component MtlA or b3599 SWALL:PTMA_ECOLI (SWALL:P00550) (637 aa) fasta scores: E(): 1.1e-188, 81.63% id in 637 aa; PTS system mannitol-specific transporter subunit IIABC 102940..104847 Pectobacterium atrosepticum SCRI1043 2881212 YP_048216.1 CDS mtlD NC_004547.2 104909 106057 D Similar to Escherichia coli mannitol-1-phosphate 5-dehydrogenase MtlD or b3600 SWALL:MTLD_ECOLI (SWALL:P09424) (382 aa) fasta scores: E(): 5.7e-108, 77.48% id in 382 aa; mannitol-1-phosphate 5-dehydrogenase 104909..106057 Pectobacterium atrosepticum SCRI1043 2881213 YP_048217.1 CDS mtlR NC_004547.2 106133 106735 D Acts as a repressor of the mtlAD operon; mannitol repressor protein 106133..106735 Pectobacterium atrosepticum SCRI1043 2881744 YP_048218.1 CDS ECA0090 NC_004547.2 106894 107256 D Similar to Yersinia pestis hypothetical protein ypo4065 SWALL:AAM87627 (EMBL:AJ414160) (118 aa) fasta scores: E(): 6.1e-24, 67.52% id in 117 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YibL SWALL:YIBL_ECOLI (SWALL:P36564) (120 aa) fasta scores: E(): 2.8e-21, 63.63% id in 121 aa; hypothetical protein 106894..107256 Pectobacterium atrosepticum SCRI1043 2885486 YP_048219.1 CDS ECA0091 NC_004547.2 107366 109258 R Similar to Yersinia pestis methyl-accepting chemotaxis protein II Tar or Tsr SWALL:AAM87624 (EMBL:AJ414160) (649 aa) fasta scores: E(): 2.3e-112, 57.98% id in 626 aa, and to Escherichia coli methyl-accepting chemotaxis protein III Trg SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 5.9e-56, 55.47% id in 393 aa; methyl-accepting chemotaxis protein complement(107366..109258) Pectobacterium atrosepticum SCRI1043 2882245 YP_048220.1 CDS sodA NC_004547.2 109636 110262 R SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase complement(109636..110262) Pectobacterium atrosepticum SCRI1043 2884373 YP_048221.1 CDS fdhD NC_004547.2 110522 111355 R involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein complement(110522..111355) Pectobacterium atrosepticum SCRI1043 2883035 YP_048222.1 CDS aldB NC_004547.2 111626 113161 D Similar to Escherichia coli aldehyde dehydrogenase B AldB or b3588 SWALL:ALDB_ECOLI (SWALL:P37685) (512 aa) fasta scores: E(): 1.4e-172, 83.2% id in 500 aa; aldehyde dehydrogenase 111626..113161 Pectobacterium atrosepticum SCRI1043 2884193 YP_048223.1 CDS ECA0095 NC_004547.2 113351 114343 D Similar to Yersinia pestis membrane protein ypo4045 SWALL:Q8Z9Y6 (EMBL:AJ414160) (330 aa) fasta scores: E(): 6.6e-88, 65.16% id in 333 aa, and to Escherichia coli hypothetical protein YiaH SWALL:YIAH_ECOLI (SWALL:P37669) (331 aa) fasta scores: E(): 5.3e-74, 56.49% id in 331 aa; hypothetical protein 113351..114343 Pectobacterium atrosepticum SCRI1043 2882246 YP_048224.1 CDS xylB NC_004547.2 114374 115831 R Similar to Escherichia coli xylulose kinase XylB SWALL:XYLB_ECOLI (SWALL:P09099) (484 aa) fasta scores: E(): 7.7e-141, 73.81% id in 485 aa; xylulose kinase complement(114374..115831) Pectobacterium atrosepticum SCRI1043 2882642 YP_048225.1 CDS xylA NC_004547.2 115898 117217 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(115898..117217) Pectobacterium atrosepticum SCRI1043 2882641 YP_048226.1 CDS xylF NC_004547.2 117691 118689 D periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; D-xylose transporter subunit XylF 117691..118689 Pectobacterium atrosepticum SCRI1043 2882643 YP_048227.1 CDS xylG NC_004547.2 118825 120366 D with XylFH is part of the high affinity xylose ABC transporter; xylose transporter ATP-binding subunit 118825..120366 Pectobacterium atrosepticum SCRI1043 2882637 YP_048228.1 CDS xylH NC_004547.2 120344 121525 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri xylose transport system permease protein XylH SWALL:XYLH_ECOLI (SWALL:P37389) (393 aa) fasta scores: E(): 3.6e-116, 82.39% id in 392 aa; xylose transport system permease 120344..121525 Pectobacterium atrosepticum SCRI1043 2882638 YP_048229.1 CDS xylR NC_004547.2 121662 122840 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 xylose operon regulatory protein XylR SWALL:XYLR_ECOLI (SWALL:P37390) (392 aa) fasta scores: E(): 2.5e-127, 81.02% id in 390 aa; xylose operon regulatory protein 121662..122840 Pectobacterium atrosepticum SCRI1043 2882639 YP_048230.1 CDS ECA0102 NC_004547.2 122910 123485 R Similar to Salmonella typhimurium intracellular protease/amidase AraH or stm1931 SWALL:Q8ZNU7 (EMBL:AE008786) (185 aa) fasta scores: E(): 1.4e-44, 64.86% id in 185 aa, and to Yersinia pestis Thij/Pfpi-family thiamine biogenesis protein ypo0845 SWALL:Q8ZHP5 (EMBL:AJ414145) (192 aa) fasta scores: E(): 1.8e-29, 47.59% id in 187 aa; hypothetical protein complement(122910..123485) Pectobacterium atrosepticum SCRI1043 2882247 YP_048231.1 CDS ECA0103 NC_004547.2 123731 123943 R No significant database matches. Possible false CDS.; hypothetical protein complement(123731..123943) Pectobacterium atrosepticum SCRI1043 2882248 YP_048232.1 CDS argG NC_004547.2 124086 125432 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 124086..125432 Pectobacterium atrosepticum SCRI1043 2884142 YP_048233.1 CDS expI NC_004547.2 125689 126339 D Similar to Erwinia carotovora autoinducer synthesis protein CarI or HslI SWALL:CARI_ERWCA (SWALL:P33880) (216 aa) fasta scores: E(): 1.1e-85, 97.22% id in 216 aa, and to Erwinia carotovora autoinducer synthesis protein ExpI SWALL:EXPI_ERWCA (SWALL:P33882) (217 aa) fasta scores: E(): 9.2e-65, 72.94% id in 207 aa, and to Erwinia chrysanthemi AhlI SWALL:Q8KUJ8 (EMBL:AF448800) (212 aa) fasta scores: E(): 6.5e-54, 62.26% id in 212 aa; N-acylhomoserine lactone synthase 125689..126339 Pectobacterium atrosepticum SCRI1043 2884752 YP_048234.1 CDS expR NC_004547.2 126323 127051 R Similar to Pectobacterium carotovorum subsp. betavasculorum LuxR homolog EcbR SWALL:O30346 (EMBL:AF001050) (242 aa) fasta scores: E(): 3.8e-85, 93.38% id in 242 aa, and to Erwinia chrysanthemi transcriptional activator protein EchR SWALL:ECHR_ERWCH (SWALL:Q46967) (250 aa) fasta scores: E(): 3.6e-54, 58.61% id in 244 aa, and to Erwinia carotovora transcriptional activator protein ExpR SWALL:EXPR_ERWCA (SWALL:Q47189) (245 aa) fasta scores: E(): 1.5e-56, 61.57% id in 244 aa. Also similar to ECA1561 (67.839%% in 199 aa overlap); quorum-sensing transcriptional regulator complement(126323..127051) Pectobacterium atrosepticum SCRI1043 2884091 YP_048235.1 CDS pmeB NC_004547.2 127317 128513 R Similar to Erwinia chrysanthemi pectinesterase B precursor PemB SWALL:PMEB_ERWCH (SWALL:Q47474) (433 aa) fasta scores: E(): 8.6e-100, 65.48% id in 394 aa, and to Erwinia carotovora pectinesterase b pemB SWALL:PMEB_ERWCA (SWALL:P55743) (178 aa) fasta scores: E(): 7.6e-61, 91.47% id in 176 aa; pectin methylesterase complement(127317..128513) Pectobacterium atrosepticum SCRI1043 2883302 YP_048236.2 CDS ECA0108 NC_004547.2 128542 128883 R Similar to Shigella flexneri conserved hypothetical protein YdgC SWALL:AAN43211 (EMBL:AE015184) (111 aa) fasta scores: E(): 9.5e-27, 65.42% id in 107 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YdgC SWALL:YDGC_ECOLI (SWALL:P52110) (111 aa) fasta scores: E(): 9.5e-27, 65.42% id in 107 aa; hypothetical protein complement(128542..128883) Pectobacterium atrosepticum SCRI1043 2882249 YP_048237.1 CDS ECA0109 NC_004547.2 129082 130098 D Similar to Escherichia coli O6 hypothetical protein c1689 SWALL:AAN80156 (EMBL:AE016760) (347 aa) fasta scores: E(): 6e-85, 68.73% id in 323 aa, and to Yersinia pestis hypothetical y2334 SWALL:AAM85893 (EMBL:AE013835) (179 aa) fasta scores: E(): 2.2e-47, 73.83% id in 172 aa; hypothetical protein 129082..130098 Pectobacterium atrosepticum SCRI1043 2882250 YP_048238.1 CDS ECA0110 NC_004547.2 130095 131123 D Similar to Yersinia pestis hypothetical protein SWALL:AAM85892 (EMBL:AL031866) (338 aa) fasta scores: E(): 1.2e-77, 59.64% id in 342 aa, and to Escherichia coli O6 hypothetical protein YbjS SWALL:AAN80157 (EMBL:AE016760) (338 aa) fasta scores: E(): 9.2e-76, 58.43% id in 332 aa, and to Yersinia pestis nucleotide di-p-sugar epimerase or dehydratase y2825 SWALL:AAM86376 (EMBL:AE013886) (341 aa) fasta scores: E(): 8.4e-58, 48.19% id in 332 aa; hypothetical protein 130095..131123 Pectobacterium atrosepticum SCRI1043 2882383 YP_048239.1 CDS ECA0111 NC_004547.2 131116 131922 D Similar to Escherichia coli O6 GumP homolog c1691 SWALL:AAN80158 (EMBL:AE016760) (268 aa) fasta scores: E(): 3.6e-70, 63.43% id in 268 aa, and to Yersinia pestis hypothetical y2332 SWALL:AAM85891 (EMBL:AE013835) (283 aa) fasta scores: E(): 2.2e-69, 62.68% id in 268 aa, and to Xanthomonas axonopodis GumP protein SWALL:Q8PJG2 (EMBL:AE011897) (282 aa) fasta scores: E(): 8.9e-25, 35.71% id in 266 aa; hypothetical protein 131116..131922 Pectobacterium atrosepticum SCRI1043 2882384 YP_048240.1 CDS ECA0112 NC_004547.2 131919 133205 D Similar to Yersinia pestis coenzyme synthetase ypo1981 SWALL:Q8ZF14 (EMBL:AJ414150) (428 aa) fasta scores: E(): 3.7e-117, 67.37% id in 423 aa, and to Escherichia coli O6 hypothetical protein c1692 SWALL:AAN80159 (EMBL:AE016760) (428 aa) fasta scores: E(): 1.3e-111, 65.48% id in 423 aa; hypothetical protein 131919..133205 Pectobacterium atrosepticum SCRI1043 2882385 YP_048241.1 CDS ECA0113 NC_004547.2 133202 133855 D Similar to Escherichia coli O6 hypothetical protein c1693 SWALL:AAN80160 (EMBL:AE016760) (204 aa) fasta scores: E(): 5.5e-40, 58.69% id in 184 aa, and to Ralstonia solanacearum probable transmembrane protein rsp0404 SWALL:Q8XSR3 (EMBL:AL646078) (220 aa) fasta scores: E(): 9.5e-09, 31.25% id in 208 aa; hypothetical protein 133202..133855 Pectobacterium atrosepticum SCRI1043 2882311 YP_048242.1 CDS ECA0114 NC_004547.2 133860 134975 D Similar to Escherichia coli O6 hypothetical protein c1694 SWALL:AAN80161 (EMBL:AE016760) (374 aa) fasta scores: E(): 9.6e-86, 56.09% id in 369 aa; hypothetical protein 133860..134975 Pectobacterium atrosepticum SCRI1043 2882312 YP_048243.1 CDS ECA0115 NC_004547.2 134972 136117 D Similar to Escherichia coli O6 hypothetical protein c1695 SWALL:AAN80162 (EMBL:AE016760) (363 aa) fasta scores: E(): 7.8e-66, 45.87% id in 364 aa, and to Synechocystis sp. linoleoyl-coA desaturase des6 or sll0262 SWALL:LLCD_SYNY3 (SWALL:Q08871) (359 aa) fasta scores: E(): 1.5e-18, 28.49% id in 365 aa; fatty acid desaturase 134972..136117 Pectobacterium atrosepticum SCRI1043 2882313 YP_048244.1 CDS ECA0116 NC_004547.2 136117 137208 D Similar to Escherichia coli O6 hypothetical protein c1695 SWALL:AAN80162 (EMBL:AE016760) (363 aa) fasta scores: E(): 4.1e-77, 54.33% id in 346 aa, and to Synechocystis sp. linoleoyl-coA desaturase des6 or sll0262 SWALL:LLCD_SYNY3 (SWALL:Q08871) (359 aa) fasta scores: E(): 1.3e-20, 28.57% id in 364 aa; fatty acid desaturase 136117..137208 Pectobacterium atrosepticum SCRI1043 2882348 YP_048245.1 CDS ECA0117 NC_004547.2 137275 138204 D Similar to Xanthomonas axonopodis hypothetical protein Xac2610 SWALL:Q8PJC5 (EMBL:AE011901) (267 aa) fasta scores: E(): 6.7e-11, 30.18% id in 159 aa, and to Yersinia pestis exported protein ypo0702 or y3476 SWALL:AAM87024 (EMBL:AJ414144) (331 aa) fasta scores: E(): 0.00098, 27.43% id in 113 aa; hypothetical protein 137275..138204 Pectobacterium atrosepticum SCRI1043 2882349 YP_048246.1 CDS aldA NC_004547.2 138613 140052 D NAD-linked; aldehyde dehydrogenase 138613..140052 Pectobacterium atrosepticum SCRI1043 2882966 YP_048247.1 CDS lldD NC_004547.2 140268 141428 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 140268..141428 Pectobacterium atrosepticum SCRI1043 2883630 YP_048248.1 CDS ECA0120 NC_004547.2 141449 142765 D Similar to Pseudomonas aeruginosa hypothetical protein Pa2651 SWALL:Q9I0I7 (EMBL:AE004694) (352 aa) fasta scores: E(): 9e-64, 51.32% id in 339 aa, and to Brucella suis membrane protein, bra0460 SWALL:AAN33654 (EMBL:AE014544) (352 aa) fasta scores: E(): 1.5e-54, 44.5% id in 346 aa; hypothetical protein 141449..142765 Pectobacterium atrosepticum SCRI1043 2882350 YP_048249.1 CDS ECA0121 NC_004547.2 142830 143192 R Similar to Pasteurella multocida hypothetical protein Pm1636 SWALL:Q9CKI1 (EMBL:AE006200) (121 aa) fasta scores: E(): 1.9e-09, 30.7% id in 114 aa, and to Xylella fastidiosa hypothetical protein Xf2198 SWALL:Q9PBE6 (EMBL:AE004033) (133 aa) fasta scores: E(): 1.4e-05, 36.14% id in 83 aa; hypothetical protein complement(142830..143192) Pectobacterium atrosepticum SCRI1043 2882251 YP_048250.1 CDS ECA0122 NC_004547.2 143224 143610 R No significant database matches.; hypothetical protein complement(143224..143610) Pectobacterium atrosepticum SCRI1043 2882252 YP_048251.1 CDS ECA0123 NC_004547.2 143719 144270 D No significant database matches.; lipoprotein 143719..144270 Pectobacterium atrosepticum SCRI1043 2882253 YP_048252.1 CDS ECA0124 NC_004547.2 144322 144879 R No significant database matches.; lipoprotein complement(144322..144879) Pectobacterium atrosepticum SCRI1043 2882411 YP_048253.1 CDS ECA0125 NC_004547.2 144970 145197 R Similar to Anabaena sp. hypothetical protein Asr3468 asr3468 SWALL:Q8YRH9 (EMBL:AP003593) (83 aa) fasta scores: E(): 0.99, 34.28% id in 70 aa; hypothetical protein complement(144970..145197) Pectobacterium atrosepticum SCRI1043 2882412 YP_048254.1 CDS ECA0126 NC_004547.2 145496 145804 D Similar to Escherichia coli O6 hypothetical protein c5295 SWALL:AAN83716 (EMBL:AE016771) (163 aa) fasta scores: E(): 3.3e-09, 43.82% id in 89 aa; hypothetical protein 145496..145804 Pectobacterium atrosepticum SCRI1043 2882413 YP_048255.1 CDS ECA0127 NC_004547.2 145801 147051 D Similar to Escherichia coli O6 hypothetical protein c5297 SWALL:AAN83718 (EMBL:AE016771) (203 aa) fasta scores: E(): 3.7e-34, 50.25% id in 199 aa, and to Erwinia amylovora hypothetical 47.8 kDa protein SWALL:Q9F814 (EMBL:AF264948) (427 aa) fasta scores: E(): 8.3e-14, 27.5% id in 429 aa; hypothetical protein 145801..147051 Pectobacterium atrosepticum SCRI1043 2882386 YP_048256.1 CDS ECA0128 NC_004547.2 147194 147496 R No significant database matches.; hypothetical protein complement(147194..147496) Pectobacterium atrosepticum SCRI1043 2882387 YP_048257.1 CDS ECA0129 NC_004547.2 148811 150391 R Similar to Vibrio cholerae deoxycytidylate deaminase-related protein vc0175 SWALL:Q9KVH1 (EMBL:AE004108) (532 aa) fasta scores: E(): 1.2e-25, 37.32% id in 509 aa, and to Listeria monocytogenes competence protein SWALL:Q8RT79 (EMBL:AF468456) (176 aa) fasta scores: E(): 7.7e-05, 41.42% id in 70 aa; deoxycytidylate deaminase complement(148811..150391) Pectobacterium atrosepticum SCRI1043 2882388 YP_048258.1 CDS ECA0130 NC_004547.2 150683 151546 R Similar to Yersinia pestis hypothetical protein ypo0043 SWALL:AAM83692 (EMBL:AJ414141) (287 aa) fasta scores: E(): 5.3e-83, 86.76% id in 287 aa, and to Escherichia coli protein YicC SWALL:YICC_ECOLI (SWALL:P23839) (287 aa) fasta scores: E(): 8e-82, 85.01% id in 287 aa; hypothetical protein complement(150683..151546) Pectobacterium atrosepticum SCRI1043 2882374 YP_048259.1 CDS ECA0131 NC_004547.2 151645 152553 R Similar to Pseudomonas aeruginosa probable transcriptional regulator pa5085 SWALL:Q9HU98 (EMBL:AE004921) (318 aa) fasta scores: E(): 9.5e-27, 36.15% id in 307 aa, and to Salmonella typhimurium, and Salmonella typhi positive transcriptional regulator LysR SWALL:Q8XGD5 (EMBL:AE008838) (311 aa) fasta scores: E(): 1.8e-15, 26.66% id in 300 aa, and to Escherichia coli transcriptional activator protein LysR SWALL:LYSR_ECOLI (SWALL:P03030) (311 aa) fasta scores: E(): 3.2e-13, 27.79% id in 277 aa; LysR family transcriptional regulator complement(151645..152553) Pectobacterium atrosepticum SCRI1043 2882375 YP_048260.1 CDS ECA0132 NC_004547.2 152758 153705 R Similar to Arabidopsis thaliana L-asparaginase at5g08100 or t22d6_40 SWALL:ASPG_ARATH (SWALL:P50287) (315 aa) fasta scores: E(): 7.9e-38, 44.22% id in 303 aa, and to Escherichia coli L-asparaginase precursor ybik or b0828 SWALL:ASGX_ECOLI (SWALL:P37595) (321 aa) fasta scores: E(): 3.2e-73, 65.39% id in 315 aa; L-asparaginase complement(152758..153705) Pectobacterium atrosepticum SCRI1043 2882376 YP_048261.1 CDS ECA0133 NC_004547.2 153765 154586 R Similar to Ralstonia solanacearum hypothetical protein rsc1384 SWALL:Q8XZL1 (EMBL:AL646064) (271 aa) fasta scores: E(): 4.5e-37, 43.49% id in 269 aa, and to Bacillus subtilis dipeptide transport protein DppA or DciaA SWALL:DPPA_BACSU (SWALL:P26902) (274 aa) fasta scores: E(): 9.7e-19, 32.84% id in 274 aa; hypothetical protein complement(153765..154586) Pectobacterium atrosepticum SCRI1043 2885397 YP_048262.1 CDS ECA0134 NC_004547.2 154589 155671 R Similar to Rhizobium loti probable D-aminopeptidase mlr2477 SWALL:Q98IB6 (EMBL:AP002999) (343 aa) fasta scores: E(): 8.8e-55, 52.74% id in 328 aa; peptidase complement(154589..155671) Pectobacterium atrosepticum SCRI1043 2885398 YP_048263.1 CDS ECA0135 NC_004547.2 155680 156579 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 5.1e-44, 45.26% id in 285 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1382 or rs04665 SWALL:Q8XZL3 (EMBL:AL646064) (299 aa) fasta scores: E(): 3.3e-62, 57.71% id in 298 aa; ABC transporter permease complement(155680..156579) Pectobacterium atrosepticum SCRI1043 2885399 YP_048264.1 CDS ECA0136 NC_004547.2 156588 157508 R Similar to Escherichia coli hypothetical ABC transporter permease protein ylic or b0831 SWALL:YLIC_ECOLI (SWALL:P75798) (306 aa) fasta scores: E(): 4.3e-64, 52.94% id in 306 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1381 or rs04750 SWALL:Q8XZL4 (EMBL:AL646064) (307 aa) fasta scores: E(): 5.6e-63, 54.6% id in 304 aa; ABC transporter permease complement(156588..157508) Pectobacterium atrosepticum SCRI1043 2885478 YP_048265.1 CDS ECA0137 NC_004547.2 157527 159068 R Similar to Salmonella typhi ABC transporter periplasmic binding protein YliB SWALL:Q8Z863 (EMBL:AL627268) (512 aa) fasta scores: E(): 1e-78, 41% id in 517 aa, and to Escherichia coli binding protein YliB precursor SWALL:YLIB_ECOLI (SWALL:P75797) (512 aa) fasta scores: E(): 5.5e-78, 42.3% id in 513 aa; ABC transporter periplasmic-binding protein complement(157527..159068) Pectobacterium atrosepticum SCRI1043 2885479 YP_048266.1 CDS ECA0138 NC_004547.2 159155 161014 R Similar to Salmonella typhimurium ATPase components of ABC-type transport system, containing duplicated atpase domain YliA SWALL:Q8ZQM4 (EMBL:AE008735) (623 aa) fasta scores: E(): 1.3e-118, 57% id in 607 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YliA SWALL:YLIA_ECOLI (SWALL:P75796) (629 aa) fasta scores: E(): 5.6e-117, 55.66% id in 609 aa; ABC transporter ATP-binding protein complement(159155..161014) Pectobacterium atrosepticum SCRI1043 2885480 YP_048267.1 CDS ECA0139 NC_004547.2 161071 162039 R Similar to Escherichia coli O6 hypothetical protein YcjG SWALL:AAN80263 (EMBL:AE016760) (335 aa) fasta scores: E(): 6.9e-54, 47.35% id in 321 aa, and to Yersinia pestis mandelate racemase / muconate lactonizing protein ypo2341 SWALL:Q8ZE43 (EMBL:AJ414152) (324 aa) fasta scores: E(): 5.4e-52, 47.33% id in 319 aa; mandelate racemase/muconate lactonizing family protein complement(161071..162039) Pectobacterium atrosepticum SCRI1043 2885394 YP_048268.1 CDS rph NC_004547.2 162282 162998 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 162282..162998 Pectobacterium atrosepticum SCRI1043 2885028 YP_048269.1 CDS pyrE NC_004547.2 163345 163986 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 163345..163986 Pectobacterium atrosepticum SCRI1043 2882677 YP_048270.1 CDS slmA NC_004547.2 164389 164985 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(164389..164985) Pectobacterium atrosepticum SCRI1043 2884225 YP_048271.1 CDS dut NC_004547.2 165111 165569 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(165111..165569) Pectobacterium atrosepticum SCRI1043 2881856 YP_048272.1 CDS dfp NC_004547.2 165547 166824 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(165547..166824) Pectobacterium atrosepticum SCRI1043 2883561 YP_048273.1 CDS radC NC_004547.2 166978 167643 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 166978..167643 Pectobacterium atrosepticum SCRI1043 2882880 YP_048274.1 CDS rpmB NC_004547.2 167881 168117 D required for 70S ribosome assembly; 50S ribosomal protein L28 167881..168117 Pectobacterium atrosepticum SCRI1043 2883079 YP_048275.1 CDS rpmG NC_004547.2 168129 168296 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 168129..168296 Pectobacterium atrosepticum SCRI1043 2884490 YP_048276.1 CDS mutM NC_004547.2 168516 169325 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 168516..169325 Pectobacterium atrosepticum SCRI1043 2881463 YP_048277.1 CDS ECA0149 NC_004547.2 169392 170366 D Similar to Yersinia pestis sugar transferase RafQ SWALL:Q8ZJC7 (EMBL:AJ414141) (326 aa) fasta scores: E(): 8.7e-82, 60.06% id in 323 aa, and to Serratia marcescens heptosyliii transferase WaaQ SWALL:Q9X979 (EMBL:U52844) (337 aa) fasta scores: E(): 7.2e-12, 26.23% id in 343 aa, and to Escherichia coli WaaQ SWALL:Q9R9D5 (EMBL:AF019746) (340 aa) fasta scores: E(): 3.2e-08, 23.25% id in 301 aa; sugar transferase 169392..170366 Pectobacterium atrosepticum SCRI1043 2885395 YP_048278.1 CDS coaD NC_004547.2 170375 170854 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(170375..170854) Pectobacterium atrosepticum SCRI1043 2884737 YP_048279.1 CDS kdtA NC_004547.2 170891 172168 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(170891..172168) Pectobacterium atrosepticum SCRI1043 2884538 YP_048280.1 CDS ECA0152 NC_004547.2 172396 173259 R Similar to Paracoccidioides brasiliensis mannosyltransferase SWALL:Q96WZ3 (EMBL:AF374353) (357 aa) fasta scores: E(): 0.00027, 26.86% id in 201 aa, and to Pasteurella piscicida capsular polysaccharide SWALL:Q8VW69 (EMBL:AB074290) (315 aa) fasta scores: E(): 1, 22.46% id in 187 aa; glycosyltransferase complement(172396..173259) Pectobacterium atrosepticum SCRI1043 2885396 YP_048281.1 CDS kdtX NC_004547.2 173307 174074 R Similar to Serratia marcescens lipopolysaccharide core biosynthesis glycosyl transferase KdtX SWALL:KDTX_SERMA (SWALL:Q54435) (257 aa) fasta scores: E(): 3.5e-66, 65.72% id in 248 aa, and to Yersinia enterocolitica glucosyl-transferase WaaE SWALL:Q8RSW8 (EMBL:AY075041) (257 aa) fasta scores: E(): 3.5e-66, 65.72% id in 248 aa; lipopolysaccharide core biosynthesis glycosyl transferase complement(173307..174074) Pectobacterium atrosepticum SCRI1043 2884738 YP_048282.1 CDS waaX NC_004547.2 174161 174907 D Similar to Edwardsiella tarda beta1,4-galactosyltransferase WaaX SWALL:AAL82722 (EMBL:AY078508) (251 aa) fasta scores: E(): 9.1e-32, 40.96% id in 249 aa, and to Escherichia coli beta1,4-galactosyltransferase WaaX SWALL:Q9ZIS2 (EMBL:AF019747) (257 aa) fasta scores: E(): 2.4e-09, 26.89% id in 264 aa; beta1,4-galactosyltransferase 174161..174907 Pectobacterium atrosepticum SCRI1043 2882358 YP_048283.1 CDS ECA0155 NC_004547.2 174978 175163 D Doubtful CDS. No significant database matches; hypothetical protein 174978..175163 Pectobacterium atrosepticum SCRI1043 2885391 YP_048284.1 CDS ECA0156 NC_004547.2 175283 176065 R No significant database matches.; hypothetical protein complement(175283..176065) Pectobacterium atrosepticum SCRI1043 2885392 YP_048285.1 CDS waaJ NC_004547.2 176214 177230 R Similar to Escherichia coli lipopolysaccharide 1,2-glucosyltransferase RfaJ or WaaJ or b3626 SWALL:RFAJ_ECOLI (SWALL:P27129) (338 aa) fasta scores: E(): 4.4e-63, 49.69% id in 330 aa, and to Salmonella typhimurium lipopolysaccharide 1,2-glucosyltransferase RfaJ or WaaJ or stm3717 SWALL:RFAJ_SALTY (SWALL:P19817) (336 aa) fasta scores: E(): 5.6e-66, 53.98% id in 326 aa; lipopolysaccharide 1,2-glucosyltransferase complement(176214..177230) Pectobacterium atrosepticum SCRI1043 2882224 YP_048286.1 CDS waaI NC_004547.2 177284 178294 R Similar to Escherichia coli lipopolysaccharide 1,3-galactosyltransferase RfaI or WaaI or b3627 SWALL:RFAI_ECOLI (SWALL:P27128) (339 aa) fasta scores: E(): 7.7e-60, 44.21% id in 337 aa, and to Salmonella typhimurium lipopolysaccharide 1,3-galactosyltransferase RfaI or WaaI or stm3718 SWALL:RFAI_SALTY (SWALL:P19816) (337 aa) fasta scores: E(): 2e-64, 48.21% id in 336 aa; lipopolysaccharide 1,3-galactosyltransferase complement(177284..178294) Pectobacterium atrosepticum SCRI1043 2882223 YP_048287.1 CDS waaG NC_004547.2 178361 179479 R Similar to Escherichia coli lipopolysaccharide core biosynthesis protein Rfag or WaaG or pcsa or b3631 SWALL:RFAG_ECOLI (SWALL:P25740) (374 aa) fasta scores: E(): 1.2e-87, 58.69% id in 368 aa, and to Salmonella typhimurium lipopolysaccharide core biosynthesis protein Rfag or WaaG or stm3722 SWALL:O68269 (EMBL:AF026386) (374 aa) fasta scores: E(): 1.5e-89, 60.05% id in 368 aa; lipopolysaccharide core biosynthesis protein complement(178361..179479) Pectobacterium atrosepticum SCRI1043 2882702 YP_048288.1 CDS waaQ NC_004547.2 179476 180546 R Similar to Escherichia coli lipopolysaccharide core biosynthesis glycosyl transferase RfaQ or WaaQ or b3632 SWALL:RFAQ_ECOLI (SWALL:P25742) (344 aa) fasta scores: E(): 1.3e-65, 52.69% id in 334 aa, and to Salmonella typhimurium lipopolysaccharide core biosynthesis, modification of heptose region of core RfaQ or stm3723 SWALL:O68270 (EMBL:AF026386) (344 aa) fasta scores: E(): 1.2e-64, 51.79% id in 334 aa; lipopolysaccharide core biosynthesis protein complement(179476..180546) Pectobacterium atrosepticum SCRI1043 2882407 YP_048289.1 CDS waaL2 NC_004547.2 180543 181769 R Similar to Escherichia coli O-antigen ligase RfaL or WaaL or b3622 SWALL:RFAL_ECOLI (SWALL:P27243) (419 aa) fasta scores: E(): 2.7e-28, 30.54% id in 406 aa. Also similar to ECA0162 (36.735% id. in 392 aa overlap); O-antigen ligase complement(180543..181769) Pectobacterium atrosepticum SCRI1043 2882406 YP_048290.1 CDS waaL1 NC_004547.2 182261 183544 R Similar to Escherichia coli O-antigen ligase RfaL or WaaL or b3622 SWALL:RFAL_ECOLI (SWALL:P27243) (419 aa) fasta scores: E(): 1.2e-28, 29.22% id in 414 aa, and to Serratia marcescens lipid a core:surface polymer ligase WaaL SWALL:Q936B4 (EMBL:U52844) (413 aa) fasta scores: E(): 1.1e-39, 33.76% id in 385 aa. Also similar to ECA0161 (36.735% id. in 392 aa overlap); O-antigen ligase complement(182261..183544) Pectobacterium atrosepticum SCRI1043 2882405 YP_048291.1 CDS waaC NC_004547.2 183541 184524 R Similar to Escherichia coli lipopolysaccharide heptosyltransferase-1 RfaC or WaaC or Rfa-2 or b3621 SWALL:RFAC_ECOLI (SWALL:P24173) (319 aa) fasta scores: E(): 6.6e-89, 71.47% id in 319 aa, and to Serratia marcescens heptosyltransferase i WaaC SWALL:Q936B6 (EMBL:U52844) (321 aa) fasta scores: E(): 8.9e-98, 76.25% id in 320 aa; ADP-heptose--LPS heptosyltransferase complement(183541..184524) Pectobacterium atrosepticum SCRI1043 2882700 YP_048292.1 CDS waaF NC_004547.2 184521 185588 R catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase complement(184521..185588) Pectobacterium atrosepticum SCRI1043 2882701 YP_048293.1 CDS rfaD NC_004547.2 185612 186544 R catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase complement(185612..186544) Pectobacterium atrosepticum SCRI1043 2885288 YP_048294.1 CDS kbl NC_004547.2 186786 187982 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase 186786..187982 Pectobacterium atrosepticum SCRI1043 2885368 YP_048295.1 CDS tdh NC_004547.2 187993 189078 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 187993..189078 Pectobacterium atrosepticum SCRI1043 2884307 YP_048296.1 CDS ECA0169 NC_004547.2 189183 190130 R Similar to Salmonella typhimurium periplasmic protein YigQ or stm3706 SWALL:Q8ZL54 (EMBL:AE008872) (320 aa) fasta scores: E(): 3.9e-70, 66.01% id in 306 aa, and to Escherichia coli hypothetical protein YibQ precursor SWALL:YIBQ_ECOLI (SWALL:P37691) (319 aa) fasta scores: E(): 3.1e-68, 66.55% id in 293 aa; hypothetical protein complement(189183..190130) Pectobacterium atrosepticum SCRI1043 2885393 YP_048297.1 CDS ECA0170 NC_004547.2 190133 191434 R Similar to Yersinia pestis membrane protein y0078 SWALL:AAM83673 (EMBL:AE013608) (456 aa) fasta scores: E(): 2.5e-78, 71.87% id in 416 aa, and to Salmonella typhi hypothetical protein Sty4090 SWALL:Q8Z2F1 (EMBL:AL627280) (427 aa) fasta scores: E(): 9.5e-72, 67.49% id in 403 aa, and to Escherichia coli hypothetical protein YibP SWALL:YIBP_ECOLI (SWALL:P37690) (419 aa) fasta scores: E(): 3.5e-71, 66.5% id in 403 aa; hypothetical protein complement(190133..191434) Pectobacterium atrosepticum SCRI1043 2881250 YP_048298.1 CDS ECA0171 NC_004547.2 191679 192110 D Similar to Yersinia pestis membrane protein ypo0065 SWALL:Q8ZJM9 (EMBL:AJ414141) (144 aa) fasta scores: E(): 1.2e-36, 69.78% id in 139 aa, and to Salmonella typhimurium, and Salmonella typhi YibN SWALL:Q8XEX1 (EMBL:AE008872) (143 aa) fasta scores: E(): 6e-34, 67.62% id in 139 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YibN SWALL:YIBN_ECOLI (SWALL:P37688) (143 aa) fasta scores: E(): 1.8e-33, 66.18% id in 139 aa; rhodanese-related sulfurtransferase 191679..192110 Pectobacterium atrosepticum SCRI1043 2881251 YP_048299.1 CDS secB NC_004547.2 192299 192775 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 192299..192775 Pectobacterium atrosepticum SCRI1043 2884412 YP_048300.1 CDS gpsA NC_004547.2 192775 193794 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 192775..193794 Pectobacterium atrosepticum SCRI1043 2885811 YP_048301.1 CDS cysE NC_004547.2 193935 194756 D catalyzes the O-acetylation of serine; serine acetyltransferase 193935..194756 Pectobacterium atrosepticum SCRI1043 2882396 YP_048302.1 CDS pagP NC_004547.2 195065 195718 D catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 195065..195718 Pectobacterium atrosepticum SCRI1043 2881733 YP_048303.1 CDS ECA0176 NC_004547.2 196154 196633 D Similar to Yersinia pestis hypothetical protein ypo2962 SWALL:Q8ZCM0 (EMBL:AJ414154) (161 aa) fasta scores: E(): 2e-36, 56.6% id in 159 aa, and to Escherichia coli O6 conserved hypothetical protein c3767 SWALL:AAN82211 (EMBL:AE016766) (159 aa) fasta scores: E(): 4.5e-35, 55.34% id in 159 aa; hypothetical protein 196154..196633 Pectobacterium atrosepticum SCRI1043 2881252 YP_048304.1 CDS ECA0177 NC_004547.2 196650 197366 D Similar to Escherichia coli O6 hypothetical protein c3766 SWALL:AAN82210 (EMBL:AE016766) (245 aa) fasta scores: E(): 1.6e-60, 62.39% id in 234 aa. No other database matches.; hypothetical protein 196650..197366 Pectobacterium atrosepticum SCRI1043 2881287 YP_048305.1 CDS ECA0178 NC_004547.2 197367 197699 D Similar to Escherichia coli hypothetical protein YgiZ SWALL:YGIZ_ECOLI (SWALL:Q46867) (110 aa) fasta scores: E(): 4.5e-13, 38.88% id in 108 aa; hypothetical protein 197367..197699 Pectobacterium atrosepticum SCRI1043 2881288 YP_048306.1 CDS ECA0179 NC_004547.2 197935 198834 D Similar to Yersinia pestis membrane protein ypo3790 SWALL:Q8ZAL1 (EMBL:AJ414159) (299 aa) fasta scores: E(): 2.1e-95, 75.08% id in 297 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical membrane protein YigM SWALL:YIGM_ECOLI (SWALL:P27849) (299 aa) fasta scores: E(): 2.9e-81, 65.31% id in 297 aa; hypothetical protein 197935..198834 Pectobacterium atrosepticum SCRI1043 2881289 YP_048307.1 CDS metR NC_004547.2 198740 199675 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri transcriptional activator protein MetR or b3828 or z5349 or ecs4758 or sf3906 SWALL:METR_ECOLI (SWALL:P19797) (317 aa) fasta scores: E(): 7.2e-105, 85.8% id in 310 aa; transcriptional activator protein complement(198740..199675) Pectobacterium atrosepticum SCRI1043 2883537 YP_048308.1 CDS metE NC_004547.2 199780 202044 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 199780..202044 Pectobacterium atrosepticum SCRI1043 2883946 YP_048309.1 CDS ECA0182 NC_004547.2 202590 204218 D Similar to Salmonella typhi methyl-accepting chemotaxis protein II CheM SWALL:Q8Z3M1 (EMBL:AL627278) (522 aa) fasta scores: E(): 6.8e-69, 46.3% id in 514 aa, and to Escherichia coli methyl-accepting chemotaxis protein I Tsr or Ched SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 3.5e-50, 41.89% id in 549 aa; methyl-accepting chemotaxis protein 202590..204218 Pectobacterium atrosepticum SCRI1043 2881275 YP_048310.1 CDS ECA0183 NC_004547.2 204906 206567 D Similar to Salmonella typhi methyl-accepting chemotaxis protein II CheM SWALL:Q8Z3M1 (EMBL:AL627278) (522 aa) fasta scores: E(): 2.2e-70, 47.66% id in 514 aa, and to Escherichia coli methyl-accepting chemotaxis protein I Tsr or Ched SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 1.2e-52, 42.03% id in 559 aa; methyl-accepting chemotaxis protein 204906..206567 Pectobacterium atrosepticum SCRI1043 2881276 YP_048311.1 CDS ECA0184 NC_004547.2 206657 207484 R Similar to Pseudomonas putida, and Pseudomonas sp. carboxymethylenebutenolidase ClcD SWALL:CLCD_PSEPU (SWALL:P11453) (236 aa) fasta scores: E(): 2.2e-10, 28.31% id in 226 aa, and to Escherichia coli carboxymethylenebutenolidase YsgA or b3830 SWALL:DLHH_ECOLI (SWALL:P56262) (271 aa) fasta scores: E(): 2.4e-74, 67.03% id in 273 aa; carboxymethylenebutenolidase complement(206657..207484) Pectobacterium atrosepticum SCRI1043 2881277 YP_048312.1 CDS udp NC_004547.2 207819 208589 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 207819..208589 Pectobacterium atrosepticum SCRI1043 2884206 YP_048313.1 CDS ECA0186 NC_004547.2 208739 209521 D Similar to Yersinia pestis hypothetical protein ypo3785 or y0445 SWALL:AAM84034 (EMBL:AJ414158) (276 aa) fasta scores: E(): 7.8e-34, 58.9% id in 275 aa; hypothetical protein 208739..209521 Pectobacterium atrosepticum SCRI1043 2882545 YP_048314.1 CDS ppc NC_004547.2 209609 212248 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(209609..212248) Pectobacterium atrosepticum SCRI1043 2885575 YP_048315.1 CDS ECA0188 NC_004547.2 212763 214136 R Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 2.9e-43, 32.79% id in 436 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 6.4e-43, 31.15% id in 459 aa; PTS system transporter subunit IIABC complement(212763..214136) Pectobacterium atrosepticum SCRI1043 2882546 YP_048316.1 CDS ECA0189 NC_004547.2 214457 215656 D Similar to Escherichia coli RspA or b1581 SWALL:RSPA_ECOLI (SWALL:P38104) (404 aa) fasta scores: E(): 1e-20, 36.07% id in 402 aa, and to Streptomyces coelicolor SpaA or sco7629 or sc10f4.02 SWALL:P95726 (EMBL:X94190) (413 aa) fasta scores: E(): 6.1e-23, 39.03% id in 415 aa. Also similar to ECA0917 (starvation sensing protein, RspA) (36.070% id. in 402 aa overlap); mandelate racemase/muconate lactonizing protein 214457..215656 Pectobacterium atrosepticum SCRI1043 2882547 YP_048317.1 CDS ECA0190 NC_004547.2 215662 216387 R Similar to Bacillus halodurans transcriptional regulator bh3917 SWALL:Q9K616 (EMBL:AP001520) (261 aa) fasta scores: E(): 6.3e-11, 26.81% id in 220 aa, and to Escherichia coli fatty acyl responsive regulator FarR SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 1.8e-09, 26.81% id in 220 aa; GntR family transcriptional regulator complement(215662..216387) Pectobacterium atrosepticum SCRI1043 2882576 YP_048318.1 CDS argE NC_004547.2 216430 217581 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(216430..217581) Pectobacterium atrosepticum SCRI1043 2884141 YP_048319.1 CDS argC NC_004547.2 217784 218788 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 217784..218788 Pectobacterium atrosepticum SCRI1043 2884145 YP_048320.1 CDS argB NC_004547.2 218826 219599 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 218826..219599 Pectobacterium atrosepticum SCRI1043 2884144 YP_048321.1 CDS argH NC_004547.2 219661 221034 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 219661..221034 Pectobacterium atrosepticum SCRI1043 2884137 YP_048322.1 CDS rmuC NC_004547.2 221269 222798 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA recombination protein RmuC or b3832 or z5354 or ecs4762 or sf3910 SWALL:RMUC_ECOLI (SWALL:P27850) (475 aa) fasta scores: E(): 3.2e-96, 72.13% id in 427 aa; DNA recombination protein 221269..222798 Pectobacterium atrosepticum SCRI1043 2885045 YP_048323.1 CDS ubiE NC_004547.2 222967 223722 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri ubiquinone/menaquinone biosynthesis methyltransferase UbiE or b3833 or z5355 or ecs4763 or sf3911 SWALL:UBIE_ECOLI (SWALL:P27851) (251 aa) fasta scores: E(): 4.5e-76, 78.88% id in 251 aa; ubiquinone/menaquinone biosynthesis methyltransferase 222967..223722 Pectobacterium atrosepticum SCRI1043 2884214 YP_048324.1 CDS ECA0197 NC_004547.2 223735 224358 D Similar to Yersinia pestis hypothetical protein ypo3780 SWALL:Q8ZAM0 (EMBL:AJ414158) (210 aa) fasta scores: E(): 1.8e-42, 56.65% id in 203 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YigP SWALL:YIGP_ECOLI (SWALL:P27852) (201 aa) fasta scores: E(): 1.2e-35, 48.78% id in 205 aa; hypothetical protein 223735..224358 Pectobacterium atrosepticum SCRI1043 2882577 YP_048325.1 CDS ubiB NC_004547.2 224355 225995 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 224355..225995 Pectobacterium atrosepticum SCRI1043 2884217 YP_048326.1 CDS tatA NC_004547.2 226078 226338 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sec-independent protein translocase protein TatA or MttA1 or b3836 or c4785 or z5358 or ecs4766 or sf3914 SWALL:TATA_ECOLI (SWALL:O65938) (89 aa) fasta scores: E(): 2.5e-17, 64.83% id in 91 aa; sec-independent protein translocase 226078..226338 Pectobacterium atrosepticum SCRI1043 2884321 YP_048327.1 CDS tatB NC_004547.2 226342 226935 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri sec-independent protein translocase protein TatB or MttA2 or b3838 or z5359 or ecs4767 or sf3915 SWALL:TATB_ECOLI (SWALL:O69415) (171 aa) fasta scores: E(): 4.4e-22, 52.82% id in 195 aa; sec-independent protein translocase 226342..226935 Pectobacterium atrosepticum SCRI1043 2884322 YP_048328.1 CDS tatC NC_004547.2 226939 227694 D with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 226939..227694 Pectobacterium atrosepticum SCRI1043 2884317 YP_048329.1 CDS tatD NC_004547.2 227773 228555 D magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 227773..228555 Pectobacterium atrosepticum SCRI1043 2884318 YP_048330.1 CDS hemB NC_004547.2 228573 229595 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 228573..229595 Pectobacterium atrosepticum SCRI1043 2885595 YP_048331.1 CDS rfaH NC_004547.2 229656 230144 R Similar to Erwinia chrysanthemi transcriptional activator RfaH SWALL:Q9ZEL8 (EMBL:AJ132239) (162 aa) fasta scores: E(): 9.6e-51, 81.48% id in 134 aa, and to Escherichia coli, and Escherichia coli O157:H7 transcriptional activator RfaH or HlyT or SfrB or b3842 or z5362 or ecs4770 SWALL:RFAH_ECOLI (SWALL:P26614) (162 aa) fasta scores: E(): 1.2e-43, 69.57% id in 161 aa.; transcriptional activator RfaH complement(229656..230144) Pectobacterium atrosepticum SCRI1043 2885290 YP_048332.1 CDS ubiD NC_004547.2 230345 231841 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 230345..231841 Pectobacterium atrosepticum SCRI1043 2884213 YP_048333.1 CDS fre NC_004547.2 231891 232592 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 231891..232592 Pectobacterium atrosepticum SCRI1043 2885065 YP_048334.1 CDS fadA NC_004547.2 232686 233849 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(232686..233849) Pectobacterium atrosepticum SCRI1043 2883863 YP_048335.1 CDS fadB NC_004547.2 233861 236050 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(233861..236050) Pectobacterium atrosepticum SCRI1043 2883864 YP_048336.1 CDS pepQ NC_004547.2 236236 237567 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 236236..237567 Pectobacterium atrosepticum SCRI1043 2885131 YP_048337.1 CDS ECA0210 NC_004547.2 237567 238178 D Similar to Escherichia coli O157:H7 hypothetical protein YigZ SWALL:Q8X8I0 (EMBL:AE005615) (205 aa) fasta scores: E(): 1.9e-44, 63.86% id in 202 aa, and to Escherichia coli hypothetical protein YigZ SWALL:YIGZ_ECOLI (SWALL:P27862) (204 aa) fasta scores: E(): 2.9e-44, 63.86% id in 202 aa; hypothetical protein 237567..238178 Pectobacterium atrosepticum SCRI1043 2882578 YP_048338.1 CDS trkH NC_004547.2 238222 239673 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri Trk system potassium uptake protein TrkH or b3849 or z5371 or ecs4777 or sf3925 SWALL:TRKH_ECOLI (SWALL:P21166) (483 aa) fasta scores: E(): 2e-172, 89.02% id in 483 aa; potassium transporter 238222..239673 Pectobacterium atrosepticum SCRI1043 2884248 YP_048339.1 CDS hemG NC_004547.2 239695 240234 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 239695..240234 Pectobacterium atrosepticum SCRI1043 2882904 YP_048340.1 CDS murB NC_004547.2 245968 247005 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 245968..247005 Pectobacterium atrosepticum SCRI1043 2881741 YP_048341.1 CDS birA NC_004547.2 247002 247961 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 247002..247961 Pectobacterium atrosepticum SCRI1043 2882501 YP_048342.1 CDS coaA NC_004547.2 247989 248939 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(247989..248939) Pectobacterium atrosepticum SCRI1043 2884957 YP_048343.1 CDS tuf NC_004547.2 250357 251541 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 250357..251541 Pectobacterium atrosepticum SCRI1043 2884226 YP_048344.1 CDS secE NC_004547.2 251779 252162 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 251779..252162 Pectobacterium atrosepticum SCRI1043 2884408 YP_048345.1 CDS nusG NC_004547.2 252164 252709 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 252164..252709 Pectobacterium atrosepticum SCRI1043 2883753 YP_048346.1 CDS rplK NC_004547.2 252872 253300 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 252872..253300 Pectobacterium atrosepticum SCRI1043 2883927 YP_048347.1 CDS rplA NC_004547.2 253304 254008 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 253304..254008 Pectobacterium atrosepticum SCRI1043 2885024 YP_048348.1 CDS rplJ NC_004547.2 254326 254823 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 254326..254823 Pectobacterium atrosepticum SCRI1043 2883968 YP_048349.1 CDS rplL NC_004547.2 254890 255255 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 254890..255255 Pectobacterium atrosepticum SCRI1043 2883928 YP_048350.1 CDS rpoB NC_004547.2 255584 259612 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 255584..259612 Pectobacterium atrosepticum SCRI1043 2884489 YP_048351.1 CDS rpoC NC_004547.2 259736 263959 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 259736..263959 Pectobacterium atrosepticum SCRI1043 2884486 YP_048352.1 CDS shiA NC_004547.2 264271 265668 D Similar to Escherichia coli shikimate transporter ShiA or b1981 SWALL:SHIA_ECOLI (SWALL:P76350) (438 aa) fasta scores: E(): 4.7e-125, 73.57% id in 420 aa; shikimate transporter 264271..265668 Pectobacterium atrosepticum SCRI1043 2884390 YP_048353.1 CDS ECA0226 NC_004547.2 265739 265930 R Similar to Escherichia coli hypothetical protein YjiS SWALL:YJIS_ECOLI (SWALL:P39390) (54 aa) fasta scores: E(): 6.1e-06, 44.44% id in 63 aa; hypothetical protein complement(265739..265930) Pectobacterium atrosepticum SCRI1043 2882582 YP_048354.1 CDS ECA0227 NC_004547.2 266104 267540 D Similar to Pseudomonas putida transcriptional regulator, GntR family pp5275 SWALL:AAN70840 (EMBL:AE016793) (496 aa) fasta scores: E(): 2.2e-120, 61% id in 477 aa, and to Escherichia coli hypothetical protein YjiR SWALL:YJIR_ECOLI (SWALL:P39389) (470 aa) fasta scores: E(): 4.1e-118, 60.55% id in 469 aa; GntR family transcriptional regulator 266104..267540 Pectobacterium atrosepticum SCRI1043 2882583 YP_048355.1 CDS thiH NC_004547.2 267925 269046 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(267925..269046) Pectobacterium atrosepticum SCRI1043 2884291 YP_048356.1 CDS thiG NC_004547.2 269043 269828 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(269043..269828) Pectobacterium atrosepticum SCRI1043 2884297 YP_048357.1 CDS thiS NC_004547.2 269830 270030 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS complement(269830..270030) Pectobacterium atrosepticum SCRI1043 2884285 YP_048358.1 CDS thiF NC_004547.2 270027 270806 R catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF complement(270027..270806) Pectobacterium atrosepticum SCRI1043 2884296 YP_048359.1 CDS thiE NC_004547.2 270808 271449 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase complement(270808..271449) Pectobacterium atrosepticum SCRI1043 2884295 YP_048360.1 CDS thiC NC_004547.2 271446 273440 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(271446..273440) Pectobacterium atrosepticum SCRI1043 2884299 YP_048361.1 CDS rsd NC_004547.2 273815 274276 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(273815..274276) Pectobacterium atrosepticum SCRI1043 2884457 YP_048362.1 CDS nudC NC_004547.2 274385 275167 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 274385..275167 Pectobacterium atrosepticum SCRI1043 2884894 YP_048363.1 CDS hemE NC_004547.2 275283 276347 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 275283..276347 Pectobacterium atrosepticum SCRI1043 2885669 YP_048364.1 CDS ECA0237 NC_004547.2 277129 277719 D Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein YjaG SWALL:YJAG_SALTY (SWALL:Q9L9I2) (196 aa) fasta scores: E(): 2.3e-65, 82.14% id in 196 aa, and to Escherichia coli hypothetical protein YjaG SWALL:YJAG_ECOLI (SWALL:P32680) (196 aa) fasta scores: E(): 3.1e-63, 79.08% id in 196 aa; lipoprotein 277129..277719 Pectobacterium atrosepticum SCRI1043 2882584 YP_048365.1 CDS hupA NC_004547.2 277924 278196 D histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 277924..278196 Pectobacterium atrosepticum SCRI1043 2883724 YP_048366.1 CDS ECA0239 NC_004547.2 278201 278887 D Similar to Yersinia pestis exported protein ypo3730 SWALL:Q8ZAR1 (EMBL:AJ414158) (233 aa) fasta scores: E(): 7.2e-42, 50.87% id in 230 aa, and to Salmonella typhi hypothetical protein sty3714 SWALL:Q8Z330 (EMBL:AL627279) (230 aa) fasta scores: E(): 3.3e-30, 38.69% id in 230 aa; lipoprotein 278201..278887 Pectobacterium atrosepticum SCRI1043 2882597 YP_048367.1 CDS purD NC_004547.2 278956 280242 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(278956..280242) Pectobacterium atrosepticum SCRI1043 2881846 YP_048368.1 CDS purH NC_004547.2 280260 281849 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(280260..281849) Pectobacterium atrosepticum SCRI1043 2881327 YP_048369.1 CDS aapP NC_004547.2 287820 288581 R Similar to Rhizobium leguminosarum general L-amino acid transport ATP-binding protein AapP SWALL:AAPP_RHILV (SWALL:Q52815) (257 aa) fasta scores: E(): 8.6e-70, 75.1% id in 245 aa, and to Escherichia coli hypothetical amino-acid ABC transporter ATP-binding protein yhdz yhdz or b3271 SWALL:YHDZ_ECOLI (SWALL:P45769) (252 aa) fasta scores: E(): 7.3e-81, 85.77% id in 253 aa; L-amino acid ABC transporter ATP-binding protein complement(287820..288581) Pectobacterium atrosepticum SCRI1043 2885738 YP_048370.1 CDS aapM NC_004547.2 288590 289684 R Similar to Rhizobium leguminosarum general L-amino acid transport system permease protein AapM SWALL:AAPM_RHILV (SWALL:Q52814) (384 aa) fasta scores: E(): 6.9e-63, 51.37% id in 364 aa, and to Escherichia coli hypothetical amino-acid ABC transporter permease protein yhdy or b3270 SWALL:YHDY_ECOLI (SWALL:P45768) (367 aa) fasta scores: E(): 1.4e-116, 81.37% id in 349 aa; L-amino acid ABC transporter permease complement(288590..289684) Pectobacterium atrosepticum SCRI1043 2885737 YP_048371.1 CDS aapQ NC_004547.2 289694 290872 R Similar to Rhizobium leguminosarum general L-amino acid transport system permease protein AapQ SWALL:AAPQ_RHILV (SWALL:Q52813) (400 aa) fasta scores: E(): 9e-62, 48.04% id in 383 aa, and to Escherichia coli hypothetical amino-acid ABC transporter permease protein yhdx or b3269 SWALL:YHDX_ECOLI (SWALL:P45767) (362 aa) fasta scores: E(): 2.5e-106, 75.77% id in 355 aa; L-amino acid ABC transporter permease complement(289694..290872) Pectobacterium atrosepticum SCRI1043 2885270 YP_048372.1 CDS aapJ NC_004547.2 290928 291953 R Similar to Rhizobium leguminosarum general L-amino acid-binding periplasmic protein AapJ precursor AapJ SWALL:AAPJ_RHILV (SWALL:Q52812) (341 aa) fasta scores: E(): 1.9e-78, 57.72% id in 343 aa, and to Escherichia coli amino-acid ABC transporter binding protein yhdw precursor yhdw or b3268 SWALL:YHDW_ECOLI (SWALL:P45766) (341 aa) fasta scores: E(): 6.6e-115, 84.45% id in 341 aa; general L-amino ABC transporter binding protein complement(290928..291953) Pectobacterium atrosepticum SCRI1043 2885736 YP_048373.1 CDS ECA0246 NC_004547.2 292333 292998 R Similar to Rhizobium meliloti amino-acid transport system permease ABC transporter protein r03276 SWALL:Q92L15 (EMBL:AL591793) (226 aa) fasta scores: E(): 4.3e-53, 68.8% id in 218 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical amino-acid ABC transporter permease protein YecS SWALL:AAN43512 (EMBL:AE000284) (222 aa) fasta scores: E(): 1.8e-34, 50% id in 218 aa; amino acid transport system permease complement(292333..292998) Pectobacterium atrosepticum SCRI1043 2882598 YP_048374.1 CDS ECA0247 NC_004547.2 293088 293855 R Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 1.2e-23, 36.01% id in 261 aa, and to Lactobacillus fermentum basic surface protein SWALL:O06530 (EMBL:U97348) (264 aa) fasta scores: E(): 6.2e-28, 37.97% id in 266 aa; cystine-binding periplasmic protein complement(293088..293855) Pectobacterium atrosepticum SCRI1043 2882599 YP_048375.1 CDS ECA0248 NC_004547.2 294012 294410 R Similar to Anabaena sp. hypothetical protein Alr2599 alr2599 SWALL:Q8YTW4 (EMBL:AP003590) (131 aa) fasta scores: E(): 1.9e-25, 64.28% id in 112 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YtfH SWALL:YTFH_ECOLI (SWALL:P39316) (126 aa) fasta scores: E(): 3.3e-25, 62.38% id in 109 aa; transcriptional regulator complement(294012..294410) Pectobacterium atrosepticum SCRI1043 2882555 YP_048376.1 CDS ECA0249 NC_004547.2 294649 295059 D Similar to Ralstonia solanacearum hypothetical protein rsc0616 or rs01517 SWALL:Q8Y1S3 (EMBL:AL646060) (156 aa) fasta scores: E(): 1.2e-33, 66.66% id in 135 aa, and to Xanthomonas axonopodis hypothetical protein Xac0357 SWALL:Q8PQG8 (EMBL:AE011661) (179 aa) fasta scores: E(): 1.2e-15, 42.24% id in 116 aa; hypothetical protein 294649..295059 Pectobacterium atrosepticum SCRI1043 2882556 YP_048377.1 CDS ECA0250 NC_004547.2 295276 296334 D Similar to Pseudomonas syringae oxidoreductase, aldo/keto reductase family pspto3075 SWALL:Q880S6 (EMBL:AE016867) (350 aa) fasta scores: E(): 1.5e-90, 66.57% id in 350 aa, and to Xanthomonas axonopodis L-fucose dehydrogenase xac0158 SWALL:Q8PR11 (EMBL:AE011640) (349 aa) fasta scores: E(): 6.9e-73, 52.99% id in 351 aa; oxidoreductase 295276..296334 Pectobacterium atrosepticum SCRI1043 2882557 YP_048378.1 CDS ECA0251 NC_004547.2 296589 297767 D No significant database matches.; hypothetical protein 296589..297767 Pectobacterium atrosepticum SCRI1043 2882523 YP_048379.1 CDS ECA0252 NC_004547.2 297836 298240 D Similar to Salmonella typhimurium cytoplasmic protein stm4186 SWALL:Q8ZKL3 (EMBL:AE008895) (135 aa) fasta scores: E(): 1.8e-24, 51.96% id in 127 aa, and to Escherichia coli O157:H7 hypothetical protein Z0414 SWALL:Q8X3L2 (EMBL:AE005211) (136 aa) fasta scores: E(): 7.2e-22, 48.43% id in 128 aa; hypothetical protein 297836..298240 Pectobacterium atrosepticum SCRI1043 2882524 YP_048380.1 CDS doc NC_004547.2 298566 299036 R Similar to Bacteriophage P1 death on curing protein Doc SWALL:DOC_BPP1 (SWALL:Q06259) (126 aa) fasta scores: E(): 1.5e-05, 37.61% id in 109 aa, and to Escherichia coli Doc protein Doc SWALL:Q47172 (EMBL:X98141) (126 aa) fasta scores: E(): 1.1e-05, 37.61% id in 109 aa; death on curing protein complement(298566..299036) Pectobacterium atrosepticum SCRI1043 2882284 YP_048381.1 CDS ECA0254 NC_004547.2 299036 299440 R No significant database matches.; hypothetical protein complement(299036..299440) Pectobacterium atrosepticum SCRI1043 2882525 YP_048382.1 CDS fis NC_004547.2 299978 300274 R Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis complement(299978..300274) Pectobacterium atrosepticum SCRI1043 2882208 YP_048383.1 CDS ECA0256 NC_004547.2 300298 301263 R Similar to Erwinia carotovora Yhdg homolog SWALL:O52539 (EMBL:AF040381) (321 aa) fasta scores: E(): 1.4e-125, 99.37% id in 321 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein Yhdg SWALL:YHDG_ECOLI (SWALL:P25717) (321 aa) fasta scores: E(): 1.6e-111, 87.53% id in 321 aa; tRNA-dihydrouridine synthase B complement(300298..301263) Pectobacterium atrosepticum SCRI1043 2882630 YP_048384.1 CDS cah NC_004547.2 301621 302355 R Similar to Erwinia carotovora carbonic anhydrase precursor Cah SWALL:CAH_ERWCA (SWALL:O52538) (244 aa) fasta scores: E(): 4.3e-93, 95.08% id in 244 aa, and to Neisseria gonorrhoeae carbonic anhydrase precursor Cah SWALL:CAH_NEIGO (SWALL:Q50940) (252 aa) fasta scores: E(): 3.7e-39, 44.44% id in 243 aa; carbonic anhydrase complement(301621..302355) Pectobacterium atrosepticum SCRI1043 2881347 YP_048385.1 CDS prmA NC_004547.2 302533 303420 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(302533..303420) Pectobacterium atrosepticum SCRI1043 2882450 YP_048386.1 CDS panF NC_004547.2 303438 304889 R mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter complement(303438..304889) Pectobacterium atrosepticum SCRI1043 2881849 YP_048387.1 CDS accC NC_004547.2 305290 306633 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(305290..306633) Pectobacterium atrosepticum SCRI1043 2885203 YP_048388.1 CDS accB NC_004547.2 306645 307112 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(306645..307112) Pectobacterium atrosepticum SCRI1043 2885202 YP_048389.1 CDS aroQ NC_004547.2 307137 307589 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(307137..307589) Pectobacterium atrosepticum SCRI1043 2884123 YP_048390.1 CDS ECA0263 NC_004547.2 307844 308443 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ complement(307844..308443) Pectobacterium atrosepticum SCRI1043 2882631 YP_048391.1 CDS ECA0264 NC_004547.2 308480 309481 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY complement(308480..309481) Pectobacterium atrosepticum SCRI1043 2882632 YP_048392.1 CDS ECA0265 NC_004547.2 309653 310630 R Similar to Yersinia pestis probable zinc-binding dehydrogenase ypo3663 SWALL:Q8ZAW8 (EMBL:AJ414158) (325 aa) fasta scores: E(): 2.4e-87, 71.6% id in 324 aa; zinc-binding oxidoreductase complement(309653..310630) Pectobacterium atrosepticum SCRI1043 2882514 YP_048393.1 CDS ECA0266 NC_004547.2 311016 312953 D regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 311016..312953 Pectobacterium atrosepticum SCRI1043 2882515 YP_048394.1 CDS mreB NC_004547.2 313270 314313 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 313270..314313 Pectobacterium atrosepticum SCRI1043 2882152 YP_048395.1 CDS mreC NC_004547.2 314487 315470 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 314487..315470 Pectobacterium atrosepticum SCRI1043 2882153 YP_048396.1 CDS mreD NC_004547.2 315467 315955 D part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 315467..315955 Pectobacterium atrosepticum SCRI1043 2882002 YP_048397.1 CDS maf NC_004547.2 315964 316557 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 315964..316557 Pectobacterium atrosepticum SCRI1043 2882516 YP_048398.1 CDS cafA NC_004547.2 316547 318016 D involved in the processing of the 5'end of 16S rRNA; ribonuclease G 316547..318016 Pectobacterium atrosepticum SCRI1043 2881346 YP_048399.1 CDS ECA0272 NC_004547.2 318058 321888 D Similar to Yersinia pestis exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa; hypothetical protein 318058..321888 Pectobacterium atrosepticum SCRI1043 2882573 YP_048400.1 CDS tldD NC_004547.2 321945 323390 D responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD 321945..323390 Pectobacterium atrosepticum SCRI1043 2884277 YP_048401.1 CDS ECA0274 NC_004547.2 323494 324087 R Similar to Xanthomonas campestris hypothetical protein Xcc1623 SWALL:Q8PA66 (EMBL:AE012263) (199 aa) fasta scores: E(): 1.7e-15, 38.65% id in 194 aa. No other significant database matches; hypothetical protein complement(323494..324087) Pectobacterium atrosepticum SCRI1043 2882574 YP_048402.1 CDS ECA0275 NC_004547.2 324097 324435 R No significant database matches.; hypothetical protein complement(324097..324435) Pectobacterium atrosepticum SCRI1043 2882575 YP_048403.1 CDS tdrA NC_004547.2 324544 325479 R Similar to Serratia marcescens temperature-dependent regulator A TdrA SWALL:Q8VUI0 (EMBL:AB077386) (303 aa) fasta scores: E(): 1.9e-100, 82.5% id in 303 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical transcriptional regulator yhcs or b3243 or c3998 or z4602 or ecs4116 SWALL:YHCS_ECOLI (SWALL:P45691) (309 aa) fasta scores: E(): 2.1e-97, 80.06% id in 311 aa; DNA-binding transcriptional regulator complement(324544..325479) Pectobacterium atrosepticum SCRI1043 2884309 YP_048404.1 CDS ECA0277 NC_004547.2 326099 326302 D membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein 326099..326302 Pectobacterium atrosepticum SCRI1043 2882517 YP_048405.1 CDS ECA0278 NC_004547.2 326310 327275 D with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeA 326310..327275 Pectobacterium atrosepticum SCRI1043 2882518 YP_048406.1 CDS ECA0279 NC_004547.2 327287 329275 D with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB 327287..329275 Pectobacterium atrosepticum SCRI1043 2882519 YP_048407.1 CDS ECA0280 NC_004547.2 329415 330869 D Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 8.3e-102, 55.41% id in 480 aa, and to Photorhabdus luminescens Orf17 SWALL:AAO17183 (EMBL:AF346500) (490 aa) fasta scores: E(): 6e-104, 57.74% id in 478 aa; succinate-semialdehyde dehydrogenase 329415..330869 Pectobacterium atrosepticum SCRI1043 2882579 YP_048408.1 CDS ECA0281 NC_004547.2 330968 331519 R Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa.; hypothetical protein complement(330968..331519) Pectobacterium atrosepticum SCRI1043 2882580 YP_048409.1 CDS pmbA NC_004547.2 331816 333156 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 331816..333156 Pectobacterium atrosepticum SCRI1043 2883469 YP_048410.1 CDS rnk NC_004547.2 333228 333638 R Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator complement(333228..333638) Pectobacterium atrosepticum SCRI1043 2885032 YP_048411.1 CDS ptsO NC_004547.2 333803 334075 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri phosphocarrier protein PtsO or Npr or RpoR or b3206 or c3966 or z4569 or ecs4085 or sf3246 SWALL:PTSO_ECOLI (SWALL:P33996) (90 aa) fasta scores: E(): 5.4e-26, 83.33% id in 90 aa; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) complement(333803..334075) Pectobacterium atrosepticum SCRI1043 2882074 YP_048412.1 CDS ECA0285 NC_004547.2 334107 334964 R Similar to Yersinia pestis hypothetical protein ypo3586SWALL:AAM83752 (EMBL:AJ414157) (284 aa) fasta scores: E(): 2.9e-105, 96.46% id in 283 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein Yhbj SWALL:YHBJ_ECOLI (SWALL:P33995) (284 aa) fasta scores: E(): 9.3e-105, 95.42% id in 284 aa; hypothetical protein complement(334107..334964) Pectobacterium atrosepticum SCRI1043 2882581 YP_048413.1 CDS ptsN NC_004547.2 335126 335599 R Similar to Escherichia coli, and Shigella flexneri nitrogen regulatory IIA protein PtsN or RpoP SWALL:PTSN_ECOLI (SWALL:P31222) (163 aa) fasta scores: E(): 1.3e-46, 80.12% id in 156 aa, and to Yersinia pestis phosphotransferase system enzyme IIA PtsN SWALL:AAM83751 (EMBL:AE013615) (164 aa) fasta scores: E(): 6.1e-48, 81.01% id in 158 aa; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(335126..335599) Pectobacterium atrosepticum SCRI1043 2882073 YP_048414.1 CDS ECA0287 NC_004547.2 335696 335983 R YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; sigma(54) modulation protein complement(335696..335983) Pectobacterium atrosepticum SCRI1043 2882585 YP_048415.1 CDS rpoN NC_004547.2 336007 337440 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(336007..337440) Pectobacterium atrosepticum SCRI1043 2884485 YP_048416.1 CDS ECA0289 NC_004547.2 337490 338215 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri probable ABC transporter ATP-binding protein YhbG SWALL:AAN44707 (EMBL:D12938) (241 aa) fasta scores: E(): 2.5e-76, 90.87% id in 241 aa, and to Salmonella typhimurium, and Salmonella typhi ABC superfamily Yhbg SWALL:Q8XFR6 (EMBL:AE008852) (241 aa) fasta scores: E(): 1.1e-75, 90.04% id in 241 aa; ABC transporter ATP-binding protein complement(337490..338215) Pectobacterium atrosepticum SCRI1043 2882586 YP_048417.1 CDS ECA0290 NC_004547.2 338219 338791 R LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; lipopolysaccharide transport periplasmic protein LptA complement(338219..338791) Pectobacterium atrosepticum SCRI1043 2882587 YP_048418.1 CDS ECA0291 NC_004547.2 338772 339338 R Similar to Salmonella typhimurium, and Salmonella typhi inner membrane protein YrbK SWALL:Q8XGY6 (EMBL:AE008852) (191 aa) fasta scores: E(): 6e-45, 64.21% id in 190 aa; hypothetical protein complement(338772..339338) Pectobacterium atrosepticum SCRI1043 2881381 YP_048419.1 CDS ECA0292 NC_004547.2 339335 339901 R forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(339335..339901) Pectobacterium atrosepticum SCRI1043 2881382 YP_048420.1 CDS ECA0293 NC_004547.2 339921 340994 R Similar to Yersinia pestis hypothetical protein ypo3577 SWALL:Q8ZB48 (EMBL:AJ414157) (328 aa) fasta scores: E(): 2e-101, 81.59% id in 326 aa, and to Escherichia coli hypothetical protein Yrbh SWALL:YRBH_ECOLI (SWALL:P45395) (328 aa) fasta scores: E(): 2e-95, 78.08% id in 324 aa; D-arabinose 5-phosphate isomerase complement(339921..340994) Pectobacterium atrosepticum SCRI1043 2881383 YP_048421.1 CDS ECA0294 NC_004547.2 341009 341977 R YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter complement(341009..341977) Pectobacterium atrosepticum SCRI1043 2881547 YP_048422.1 CDS ECA0295 NC_004547.2 342391 343203 D ATP-binding subunit of a ABC toluene efflux transporter; ABC transporter ATP-binding protein 342391..343203 Pectobacterium atrosepticum SCRI1043 2881548 YP_048423.1 CDS ECA0296 NC_004547.2 343211 343993 D Similar to Yersinia pestis membrane protein ypo3574 SWALL:Q8ZB51 (EMBL:AJ414157) (260 aa) fasta scores: E(): 1.8e-88, 88.84% id in 260 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YrbE SWALL:AAN44700 (EMBL:U18997) (260 aa) fasta scores: E(): 2.7e-84, 85.38% id in 260 aa; hypothetical protein 343211..343993 Pectobacterium atrosepticum SCRI1043 2881549 YP_048424.1 CDS vpsC NC_004547.2 343998 344564 D Similar to Shigella flexneri VpsC SWALL:Q9RHA1 (EMBL:AF053073) (183 aa) fasta scores: E(): 5.2e-45, 68.64% id in 185 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yrbd precursor yrbd or b3193 or z4556 or ecs4072 SWALL:YRBD_ECOLI (SWALL:P45391) (183 aa) fasta scores: E(): 1.1e-45, 69.18% id in 185 aa. Shigella flexneri VpsC protein is involved in virulence protein secretion; hypothetical protein 343998..344564 Pectobacterium atrosepticum SCRI1043 2882699 YP_048425.1 CDS ECA0298 NC_004547.2 344577 345206 D Similar to Escherichia coli, and Shigella flexneri protein yrbc precursor yrbc or b3192 or sf3232 SWALL:AAN44698 (EMBL:U18997) (211 aa) fasta scores: E(): 1e-62, 76.77% id in 211 aa, and to Shigella flexneri YrbC SWALL:AAF21249 (EMBL:AF053073) (211 aa) fasta scores: E(): 1e-62, 76.77% id in 211 aa; hypothetical protein 344577..345206 Pectobacterium atrosepticum SCRI1043 2882570 YP_048426.1 CDS ECA0299 NC_004547.2 345220 345510 D Similar to Yersinia pestis anti-sigma B factor antagonist ypo3571 SWALL:Q8ZB54 (EMBL:AJ414157) (100 aa) fasta scores: E(): 3.9e-18, 60.41% id in 96 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yrbb yrbb or b3191 or sf3231 SWALL:YRBB_ECOLI (SWALL:P45389) (97 aa) fasta scores: E(): 4.6e-11, 40.62% id in 96 aa; hypothetical protein 345220..345510 Pectobacterium atrosepticum SCRI1043 2882571 YP_048427.1 CDS ECA0300 NC_004547.2 345645 345899 D Similar to Yersinia pestis bolA-like protein ypo3570 SWALL:AAM83735 (EMBL:AJ414157) (87 aa) fasta scores: E(): 9.3e-29, 88.09% id in 84 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein YrbA SWALL:YRBA_ECOLI (SWALL:P43781) (84 aa) fasta scores: E(): 2.9e-27, 84.52% id in 84 aa; bolA family protein 345645..345899 Pectobacterium atrosepticum SCRI1043 2882572 YP_048428.1 CDS murA NC_004547.2 345980 347242 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 345980..347242 Pectobacterium atrosepticum SCRI1043 2881704 YP_048429.1 CDS degS NC_004547.2 347351 348448 R Similar to Escherichia coli, and Escherichia coli O157:H7 protease DegS precursor DegS or HhoB or HtrH or b3235 or z4594 or ecs4108 SWALL:DEGS_ECOLI (SWALL:P31137) (355 aa) fasta scores: E(): 9.1e-73, 58.51% id in 364 aa; serine endoprotease complement(347351..348448) Pectobacterium atrosepticum SCRI1043 2884023 YP_048430.1 CDS degQ NC_004547.2 348586 349956 R Similar to Escherichia coli protease degq precursor degq or hhoa or b3234 SWALL:DEGQ_ECOLI (SWALL:P39099) (455 aa) fasta scores: E(): 9.7e-110, 70.67% id in 457 aa; exported protease complement(348586..349956) Pectobacterium atrosepticum SCRI1043 2884022 YP_048431.1 CDS ECA0304 NC_004547.2 350194 350598 R Similar to Yersinia pestis membrane protein ypo3565 SWALL:AAM83730 (EMBL:AJ414157) (134 aa) fasta scores: E(): 1.5e-41, 87.97% id in 133 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YhcB SWALL:YHCB_ECOLI (SWALL:P39436) (134 aa) fasta scores: E(): 5.6e-34, 80.31% id in 127 aa; cytochrome d ubiquinol oxidase subunit III complement(350194..350598) Pectobacterium atrosepticum SCRI1043 2882606 YP_048432.1 CDS ECA0305 NC_004547.2 350815 351966 D Similar to Yersinia pestis hypothetical protein Ypo3564 SWALL:Q8ZB60 (EMBL:AJ414157) (375 aa) fasta scores: E(): 8.3e-107, 71.88% id in 377 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yhcm SWALL:YHCM_ECOLI (SWALL:P46442) (375 aa) fasta scores: E(): 1.6e-98, 65.6% id in 378 aa, and to Salmonella typhi ATP/GTP-binding protein sty3526 SWALL:Q8Z3E8 (EMBL:AL627278) (374 aa) fasta scores: E(): 3e-97, 63.9% id in 374 aa; ATP/GTP-binding protein 350815..351966 Pectobacterium atrosepticum SCRI1043 2882607 YP_048433.1 CDS rplM NC_004547.2 352201 352629 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 352201..352629 Pectobacterium atrosepticum SCRI1043 2883929 YP_048434.1 CDS rpsI NC_004547.2 352645 353037 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 352645..353037 Pectobacterium atrosepticum SCRI1043 2884473 YP_048435.1 CDS sspA NC_004547.2 353367 354008 D transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 353367..354008 Pectobacterium atrosepticum SCRI1043 2884348 YP_048436.1 CDS sspB NC_004547.2 354014 354517 D Similar to Escherichia coli, and Escherichia coli O157:H7 stringent starvation protein B SspB or b3228 or z4586 or ecs4101 SWALL:SSPB_ECOLI (SWALL:P25663) (165 aa) fasta scores: E(): 3e-39, 71.42% id in 168 aa; ClpXP protease specificity-enhancing factor 354014..354517 Pectobacterium atrosepticum SCRI1043 2884349 YP_048437.1 CDS budC NC_004547.2 354581 355354 R Similar to Klebsiella terrigena acetoin reductase BudC SWALL:BUDC_KLETE (SWALL:Q04520) (241 aa) fasta scores: E(): 1.3e-51, 69.06% id in 236 aa, and to Klebsiella pneumoniae acetoin reductase BudC SWALL:BUDC_KLEPN (SWALL:Q48436) (256 aa) fasta scores: E(): 1.8e-73, 82.28% id in 254 aa; acetoin reductase complement(354581..355354) Pectobacterium atrosepticum SCRI1043 2881861 YP_048438.1 CDS gltD NC_004547.2 355618 357036 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(355618..357036) Pectobacterium atrosepticum SCRI1043 2882036 YP_048439.2 CDS gltB NC_004547.2 357046 361506 R catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha complement(357046..361506) Pectobacterium atrosepticum SCRI1043 2881965 YP_048440.1 CDS ECA0313 NC_004547.2 362158 363087 D Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YhcC SWALL:YHCC_ECOLI (SWALL:P45476) (309 aa) fasta scores: E(): 2.4e-105, 82.23% id in 304 aa; hypothetical protein 362158..363087 Pectobacterium atrosepticum SCRI1043 2882608 YP_048441.1 CDS arcB NC_004547.2 363219 365588 D sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 363219..365588 Pectobacterium atrosepticum SCRI1043 2884146 YP_048442.1 CDS ECA0315 NC_004547.2 365700 365939 R No significant database matches.; lipoprotein complement(365700..365939) Pectobacterium atrosepticum SCRI1043 2885320 YP_048443.1 CDS elbB NC_004547.2 366062 366715 D Similar to Escherichia coli, and Shigella flexneri enhancing lycopene biosynthesis protein 2 ElbB or Elb2 or b3209 or sf3249 SWALL:ELBB_ECOLI (SWALL:P26428) (217 aa) fasta scores: E(): 1.6e-57, 68.2% id in 217 aa; isoprenoid biosynthesis protein with amidotransferase-like domain 366062..366715 Pectobacterium atrosepticum SCRI1043 2885207 YP_048444.1 CDS mtgA NC_004547.2 366712 367449 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 366712..367449 Pectobacterium atrosepticum SCRI1043 2881211 YP_048445.1 CDS ECA0318 NC_004547.2 367521 368813 D Similar to Yersinia pestis exported protein ypo3473 SWALL:Q8ZBE3 (EMBL:AJ414157) (408 aa) fasta scores: E(): 3.4e-43, 35.81% id in 363 aa, and to Yersinia pestis hypothetical protein ypo3468 SWALL:AAM84304 (EMBL:AJ414157) (388 aa) fasta scores: E(): 7.9e-44, 37.78% id in 397 aa; hypothetical protein 367521..368813 Pectobacterium atrosepticum SCRI1043 2885321 YP_048446.1 CDS ECA0319 NC_004547.2 368956 369528 R Similar to Yersinia pestis exported protein ypo3551 SWALL:Q8ZB73 (EMBL:AJ414157) (191 aa) fasta scores: E(): 2.2e-47, 73.82% id in 191 aa, and to Escherichia coli lipoprotein EcfH SWALL:AAL01382 (EMBL:AF407015) (191 aa) fasta scores: E(): 5.6e-46, 71.72% id in 191 aa; hypothetical protein complement(368956..369528) Pectobacterium atrosepticum SCRI1043 2885322 YP_048447.1 CDS ECA0320 NC_004547.2 369540 370130 R Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA complement(369540..370130) Pectobacterium atrosepticum SCRI1043 2885369 YP_048448.1 CDS ECA0321 NC_004547.2 370172 370414 R Similar to Yersinia pestis hypothetical protein ypo3549 or y0119 SWALL:YZ49_YERPE (SWALL:Q8ZB75) (117 aa) fasta scores: E(): 9.5e-22, 76.31% id in 76 aa, and to Salmonella typhimurium hypothetical protein yran or stm3265 SWALL:YRAN_SALTY (SWALL:Q8ZLU3) (131 aa) fasta scores: E(): 1.6e-17, 61.84% id in 76 aa; hypothetical protein complement(370172..370414) Pectobacterium atrosepticum SCRI1043 2885370 YP_048449.1 CDS ECA0322 NC_004547.2 370525 372543 R Similar to Shigella flexneri glycosylase Yram or sf3188 SWALL:AAN44655 (EMBL:AE015330) (688 aa) fasta scores: E(): 5.9e-116, 52.47% id in 686 aa, and to Yersinia pestis glycosylase y0118 SWALL:AAM83712 (EMBL:AE013612) (689 aa) fasta scores: E(): 4.8e-55, 59.61% id in 676 aa; hypothetical protein complement(370525..372543) Pectobacterium atrosepticum SCRI1043 2885371 YP_048450.1 CDS ECA0323 NC_004547.2 372605 373492 D Similar to Yersinia pestis tetrapyrrole methylase ypo3547 SWALL:AAM83711 (EMBL:AJ414157) (299 aa) fasta scores: E(): 2.8e-92, 84.12% id in 296 aa, and to Escherichia coli O6 hypothetical protein Yral SWALL:AAN82340 (EMBL:AE016767) (287 aa) fasta scores: E(): 2.4e-90, 83.27% id in 287 aa; tetrapyrrole methylase 372605..373492 Pectobacterium atrosepticum SCRI1043 2885345 YP_048451.1 CDS ECA0325 NC_004547.2 374208 374462 D Similar to Erwinia pyrifoliae plasmid stability protein StbD stbD SWALL:AAN04532 (EMBL:AY123045) (84 aa) fasta scores: E(): 8.7e-27, 88.09% id in 84 aa, and to Morganella morganii stability protein StbD SWALL:Q9ZH43 (EMBL:AF072126) (83 aa) fasta scores: E(): 9.5e-18, 63.95% id in 86 aaand to Escherichia coli IncF plasmid RepFIB replicon SWALL:Q60256 (EMBL:M26308) (83 aa) fasta scores: E(): 7.6e-10, 43.59% id in 78 aa; plasmid stability protein 374208..374462 Pectobacterium atrosepticum SCRI1043 2885346 YP_048452.1 CDS ECA0326 NC_004547.2 374452 374739 D Similar to Erwinia pyrifoliae plasmid stability protein StbE SWALL:AAN04531 (EMBL:AY123045) (95 aa) fasta scores: E(): 1.7e-31, 90.32% id in 93 aa, and to Morganella morganii stability protein StbE SWALL:Q9ZH42 (EMBL:AF072126) (93 aa) fasta scores: E(): 1.3e-19, 62.06% id in 87 aa, and to Escherichia coli, and Shigella flexneri hypothetical RelE protein SWALL:RELE_ECOLI (SWALL:P07008) (95 aa) fasta scores: E(): 2.5e-15, 53.76% id in 93 aa; plasmid stability protein 374452..374739 Pectobacterium atrosepticum SCRI1043 2885347 YP_048453.1 CDS ECA0327 NC_004547.2 374918 375703 D seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein 374918..375703 Pectobacterium atrosepticum SCRI1043 2885376 YP_048454.1 CDS ECA0328 NC_004547.2 375772 376932 R Similar to Yersinia pestis hypothetical protein ypo0660 SWALL:Q8ZI54 (EMBL:AJ414144) (386 aa) fasta scores: E(): 1e-145, 87.27% id in 385 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YgiC SWALL:YGIC_ECOLI (SWALL:P24196) (386 aa) fasta scores: E(): 1.4e-133, 78.49% id in 386 aa.; glutathionylspermidine synthase complement(375772..376932) Pectobacterium atrosepticum SCRI1043 2885377 YP_048455.1 CDS ECA0329 NC_004547.2 376944 377618 R Similar to Yersinia pestis exported protein ypo0661 or y3517 SWALL:Q8ZI53 (EMBL:AJ414144) (228 aa) fasta scores: E(): 2.1e-59, 77.68% id in 233 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein ygib or stm3187 or sty3365 SWALL:Q8XGZ1 (EMBL:AE008846) (223 aa) fasta scores: E(): 3.8e-57, 74.56% id in 228 aa; hypothetical protein complement(376944..377618) Pectobacterium atrosepticum SCRI1043 2885378 YP_048456.2 CDS tolC NC_004547.2 377889 379283 R trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein complement(377889..379283) Pectobacterium atrosepticum SCRI1043 2884268 YP_048457.1 CDS nudF NC_004547.2 379620 380252 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase 379620..380252 Pectobacterium atrosepticum SCRI1043 2884619 YP_048458.1 CDS ECA0332 NC_004547.2 380254 380688 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YqiB SWALL:AAN44551 (EMBL:D16557) (140 aa) fasta scores: E(): 1.6e-47, 80% id in 140 aa.; hypothetical protein 380254..380688 Pectobacterium atrosepticum SCRI1043 2882665 YP_048459.1 CDS icc NC_004547.2 380920 381747 D Similar to Escherichia coli, and Escherichia coli O157:H7 Icc protein Icc or b3032 or z4389 or ecs3920 SWALL:ICC_ECOLI (SWALL:P36650) (275 aa) fasta scores: E(): 2.1e-82, 70.54% id in 275 aa, and to Yersinia pestis Icc protein homologue Icc or ypo0666 SWALL:Q8ZI48 (EMBL:AJ414144) (275 aa) fasta scores: E(): 4.8e-92, 76.72% id in 275 aa; cyclic 3',5'-adenosine monophosphate phosphodiesterase 380920..381747 Pectobacterium atrosepticum SCRI1043 2882856 YP_048460.1 CDS ECA0334 NC_004547.2 381747 382328 D Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase 381747..382328 Pectobacterium atrosepticum SCRI1043 2882666 YP_048461.1 CDS parE NC_004547.2 382412 384307 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 382412..384307 Pectobacterium atrosepticum SCRI1043 2881414 YP_048462.1 CDS ECA0336 NC_004547.2 384350 385246 D Similar to Neisseria meningitidis CrgA SWALL:Q9JPU9 (EMBL:AF190471) (299 aa) fasta scores: E(): 4.9e-49, 45.27% id in 296 aa, and to Yersinia pestis LysR-family regulatory protein ypo0669 or y3510 SWALL:Q8ZI45 (EMBL:AJ414144) (303 aa) fasta scores: E(): 1.4e-70, 65.18% id in 293 aa; LysR family transcriptional regulator 384350..385246 Pectobacterium atrosepticum SCRI1043 2882667 YP_048463.1 CDS mdaB NC_004547.2 385287 385868 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 modulator of drug activity B MdaB or mda66 or b3028 or c3768 or z4379 or ecs3910 SWALL:MDAB_ECOLI (SWALL:P40717) (193 aa) fasta scores: E(): 8.6e-61, 70.83% id in 192 aa, and to Yersinia pestis modulator of drug activity MdaB or ypo0670 or y3509 SWALL:Q8ZI44 (EMBL:AJ414144) (194 aa) fasta scores: E(): 2.1e-61, 74.46% id in 188 aa; modulator of drug activity B complement(385287..385868) Pectobacterium atrosepticum SCRI1043 2881440 YP_048464.1 CDS ECA0338 NC_004547.2 386071 386934 R Similar to Lactobacillus casei D-fructose-1,6-biphosphate aldolase sorG SWALL:Q9RGG1 (EMBL:AF129168) (276 aa) fasta scores: E(): 1.9e-37, 41.97% id in 274 aa, and to Escherichia coli O6 aldolase c4483 SWALL:AAN82919 (EMBL:AE016769) (286 aa) fasta scores: E(): 8.4e-89, 80.06% id in 286 aa; hypothetical protein complement(386071..386934) Pectobacterium atrosepticum SCRI1043 2885161 YP_048465.1 CDS ECA0339 NC_004547.2 387024 387875 R Similar to Escherichia coli tagatose-1,6-bisphosphate aldolase GatY or b2096 SWALL:GATY_ECOLI (SWALL:P37192) (284 aa) fasta scores: E(): 1.8e-26, 36.36% id in 286 aa, and to Escherichia coli O6 aldolase c4484 SWALL:AAN82920 (EMBL:AE016769) (283 aa) fasta scores: E(): 7.5e-58, 59.01% id in 283 aa; sugar-bisphosphate aldolase complement(387024..387875) Pectobacterium atrosepticum SCRI1043 2885162 YP_048466.1 CDS ECA0340 NC_004547.2 387887 388978 R Similar to Escherichia coli O6 PTS enzyme-II fructose c4485 SWALL:AAN82921 (EMBL:AE016769) (363 aa) fasta scores: E(): 4.2e-116, 84.29% id in 363 aa, and to Listeria innocua hypothetical protein Lin2240 SWALL:Q929N4 (EMBL:AL596171) (363 aa) fasta scores: E(): 5.9e-68, 51.82% id in 357 aa; PTS system transporter subunit IIBC complement(387887..388978) Pectobacterium atrosepticum SCRI1043 2885163 YP_048467.1 CDS ECA0341 NC_004547.2 389004 389318 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, fructose-like-2 IIb component 1 frwb or b3950 or c4908 or z5506 or ecs4879 or sf4027 SWALL:PTWB_ECOLI (SWALL:P32673) (106 aa) fasta scores: E(): 8.5e-14, 50% id in 100 aa, and to Escherichia coli O6 pts system, fructose-like-2 IIb component 1 c4486 SWALL:AAN82922 (EMBL:AE016769) (104 aa) fasta scores: E(): 2.1e-27, 80.19% id in 101 aa; PTS system transporter subunit IIB complement(389004..389318) Pectobacterium atrosepticum SCRI1043 2885177 YP_048468.1 CDS ECA0342 NC_004547.2 389332 389811 R Similar to Escherichia coli O6 phosphotransferase system c4487 SWALL:AAN82923 (EMBL:AE016769) (156 aa) fasta scores: E(): 1.7e-44, 79.73% id in 153 aa, and to Listeria monocytogenes hypothetical protein Lmo2137 lmo2137 SWALL:Q8Y5C8 (EMBL:AL591982) (157 aa) fasta scores: E(): 2.2e-23, 48.99% id in 149 aa; PTS system transporter subunit EIIA complement(389332..389811) Pectobacterium atrosepticum SCRI1043 2885178 YP_048469.1 CDS ECA0343 NC_004547.2 389860 391410 R Similar to Escherichia coli O6 transcriptional antiterminator c4488 SWALL:AAN82924 (EMBL:AE016769) (532 aa) fasta scores: E(): 1.5e-115, 59.37% id in 512 aa, and to Bacillus stearothermophilus MtlR protein SWALL:Q45419 (EMBL:U18943) (697 aa) fasta scores: E(): 3.1e-30, 25% id in 508 aa; PTS system regulatory protein complement(389860..391410) Pectobacterium atrosepticum SCRI1043 2885179 YP_048470.1 CDS ECA0344 NC_004547.2 391922 392257 D No significant database matches.; hypothetical protein 391922..392257 Pectobacterium atrosepticum SCRI1043 2884573 YP_048471.1 CDS parC NC_004547.2 392535 394805 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 392535..394805 Pectobacterium atrosepticum SCRI1043 2881413 YP_048472.1 CDS plsC NC_004547.2 394956 395693 D Similar to Escherichia coli 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC or ParF or b3018 SWALL:PLSC_ECOLI (SWALL:P26647) (245 aa) fasta scores: E(): 2e-77, 75.41% id in 244 aa; 1-acyl-sn-glycerol-3-phosphate acyltransferase 394956..395693 Pectobacterium atrosepticum SCRI1043 2883467 YP_048473.1 CDS sufI NC_004547.2 395766 397181 D Similar to Escherichia coli protein sufi precursor SufI or b3017 SWALL:SUFI_ECOLI (SWALL:P26648) (470 aa) fasta scores: E(): 2.8e-137, 70.87% id in 467 aa, and to Yersinia pestis cell division protein SufI or ypo0673 or y3504 SWALL:Q8ZI41 (EMBL:AJ414144) (474 aa) fasta scores: E(): 1.9e-150, 77.91% id in 471 aa; repressor protein for FtsI 395766..397181 Pectobacterium atrosepticum SCRI1043 2884334 YP_048474.1 CDS ECA0348 NC_004547.2 397546 398283 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical transcriptional regulator YegW SWALL:YEGW_ECOLI (SWALL:P76420) (248 aa) fasta scores: E(): 3.2e-22, 30.8% id in 237 aa; GntR family transcriptional regulator 397546..398283 Pectobacterium atrosepticum SCRI1043 2884574 YP_048475.1 CDS dkgA NC_004547.2 398326 399153 R methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A complement(398326..399153) Pectobacterium atrosepticum SCRI1043 2883259 YP_048476.1 CDS ECA0350 NC_004547.2 399423 400586 R Similar to Yersinia pestis iron-containing alcohol dehydrogenase ypo0678 SWALL:Q8ZI38 (EMBL:AJ414144) (385 aa) fasta scores: E(): 3.8e-112, 76.94% id in 386 aa, and to Escherichia coli hypothetical oxidoreductase YqhD SWALL:YQHD_ECOLI (SWALL:Q46856) (387 aa) fasta scores: E(): 3e-108, 73.64% id in 387 aa; iron-containing alcohol dehydrogenase complement(399423..400586) Pectobacterium atrosepticum SCRI1043 2884575 YP_048477.1 CDS ECA0351 NC_004547.2 400590 401330 R Similar to Bacillus subtilis nitro/flavin reductase NfrA or NfrA1 or Ipa-43D SWALL:NFRA_BACSU (SWALL:P39605) (249 aa) fasta scores: E(): 5.2e-19, 29.83% id in 248 aa, and to Clostridium acetobutylicum ortholog ycnd b.subtilis, nitroreductase cac0718 SWALL:Q97L47 (EMBL:AE007587) (246 aa) fasta scores: E(): 1.2e-42, 45.49% id in 244 aa; nitroreductase complement(400590..401330) Pectobacterium atrosepticum SCRI1043 2884700 YP_048478.1 CDS ECA0352 NC_004547.2 401582 402547 D Similar to Yersinia pestis AraC-family regulatory protein ypo0679 SWALL:AAM87046 (EMBL:AJ414144) (297 aa) fasta scores: E(): 3.2e-77, 66.21% id in 296 aa, and to Escherichia coli hypothetical transcriptional regulator YqhC SWALL:YQHC_ECOLI (SWALL:Q46855) (318 aa) fasta scores: E(): 1.2e-66, 57.77% id in 296 aa; AraC family transcriptional regulator 401582..402547 Pectobacterium atrosepticum SCRI1043 2884701 YP_048479.1 CDS ECA0353 NC_004547.2 402577 403236 R Similar to Yersinia pestis DedA-family membrane protein ypo0680 SWALL:Q8ZI36 (EMBL:AJ414144) (220 aa) fasta scores: E(): 1.6e-66, 75.11% id in 217 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YghB SWALL:YGHB_ECOLI (SWALL:P33196) (219 aa) fasta scores: E(): 1e-60, 69.3% id in 215 aa; DedA family membrane protein complement(402577..403236) Pectobacterium atrosepticum SCRI1043 2884702 YP_048480.1 CDS metC NC_004547.2 403671 404861 R catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase complement(403671..404861) Pectobacterium atrosepticum SCRI1043 2883959 YP_048481.1 CDS ECA0355 NC_004547.2 405197 406489 R Similar to Yersinia pestis c4-dicarboxylate transporter, large subunit ypo1577 SWALL:AAM86142 (EMBL:AJ414149) (430 aa) fasta scores: E(): 2.6e-146, 92.09% id in 430 aa; DedA family membrane protein complement(405197..406489) Pectobacterium atrosepticum SCRI1043 2884694 YP_048482.1 CDS ECA0356 NC_004547.2 406505 407011 R Similar to Yersinia pestis C4-dicarboxylate transporter, small subunit ypo1578 SWALL:Q8ZFV0 (EMBL:AJ414149) (168 aa) fasta scores: E(): 5.2e-51, 70.83% id in 168 aa; hypothetical protein complement(406505..407011) Pectobacterium atrosepticum SCRI1043 2884695 YP_048483.1 CDS ECA0357 NC_004547.2 407348 408325 R Similar to Rhodobacter capsulatus C4-dicarboxylate-binding periplasmic protein precursor DctP SWALL:DCTP_RHOCA (SWALL:P37735) (333 aa) fasta scores: E(): 2.3e-25, 31.3% id in 329 aa, and to Yersinia pestis C4-dicarboxylate transporter, periplasmic protein ypo1579 SWALL:Q8ZFU9 (EMBL:AJ414149) (330 aa) fasta scores: E(): 5.7e-94, 75.45% id in 330 aa; substrate-binding periplasmic protein complement(407348..408325) Pectobacterium atrosepticum SCRI1043 2884696 YP_048484.1 CDS exbB NC_004547.2 409087 410001 D Similar to Escherichia coli, and Escherichia coli O157:H7 biopolymer transport ExbB protein ExbB or b3006 or z4359 or ecs3890 SWALL:EXBB_ECOLI (SWALL:P18783) (244 aa) fasta scores: E(): 9.3e-57, 75.2% id in 242 aa; biopolymer transport protein 409087..410001 Pectobacterium atrosepticum SCRI1043 2884823 YP_048485.1 CDS exbD NC_004547.2 410005 410430 D membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 410005..410430 Pectobacterium atrosepticum SCRI1043 2884824 YP_048486.1 CDS scrR NC_004547.2 410542 411561 R Similar to Erwinia amylovora repressor scrR SWALL:Q9F497 (EMBL:AJ250722) (342 aa) fasta scores: E(): 4.7e-86, 65.46% id in 333 aa, and to Klebsiella pneumoniae sucrose operon repressor scrR SWALL:SCRR_KLEPN (SWALL:P37076) (334 aa) fasta scores: E(): 5.5e-88, 65.07% id in 335 aa; sucrose operon repressor complement(410542..411561) Pectobacterium atrosepticum SCRI1043 2884420 YP_048487.1 CDS scrB NC_004547.2 411592 413001 R Similar to Erwinia amylovora sucrose hydrolase, invertase ScrB SWALL:Q9F498 (EMBL:AJ250722) (469 aa) fasta scores: E(): 5.2e-132, 62.47% id in 469 aa, and to Klebsiella pneumoniae sucrose-6-phosphate hydrolase ScrB SWALL:SCRB_KLEPN (SWALL:P27217) (465 aa) fasta scores: E(): 1.3e-110, 55.19% id in 462 aa; sucrose-6-phosphate hydrolase complement(411592..413001) Pectobacterium atrosepticum SCRI1043 2884424 YP_048488.1 CDS scrA NC_004547.2 413001 414371 R Similar to Klebsiella pneumoniae PTS system, sucrose-specific IIbc component ScrA SWALL:PTSB_KLEPN (SWALL:P27219) (456 aa) fasta scores: E(): 2.1e-142, 80.92% id in 456 aa, and to Erwinia amylovora enzyme II ScrA SWALL:Q9F499 (EMBL:AJ250722) (457 aa) fasta scores: E(): 9e-140, 80.97% id in 452 aa; PTS system sucrose-specific transporter subunit IIBC complement(413001..414371) Pectobacterium atrosepticum SCRI1043 2884423 YP_048489.1 CDS scrY NC_004547.2 414451 415986 R Similar to Klebsiella pneumoniae sucrose porin precursor ScrY SWALL:SCRY_KLEPN (SWALL:P27218) (505 aa) fasta scores: E(): 1.3e-125, 63.33% id in 510 aa, and to Erwinia amylovora porin ScrY SWALL:Q9F4A0 (EMBL:AJ250722) (514 aa) fasta scores: E(): 8.5e-118, 62.57% id in 521 aa; sucrose porin complement(414451..415986) Pectobacterium atrosepticum SCRI1043 2884421 YP_048490.1 CDS scrK NC_004547.2 416177 417112 R phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase complement(416177..417112) Pectobacterium atrosepticum SCRI1043 2884425 YP_048491.1 CDS ECA0365 NC_004547.2 417455 418135 D Similar to Yersinia pestis membrane protein ypo4112 SWALL:AAM87668 (EMBL:AJ414160) (223 aa) fasta scores: E(): 2e-10, 30% id in 190 aa, and to Proteus mirabilis CcM1 protein SWALL:O86433 (EMBL:AJ000084) (228 aa) fasta scores: E(): 1.1e-08, 32.06% id in 131 aa; hypothetical protein 417455..418135 Pectobacterium atrosepticum SCRI1043 2884667 YP_048492.1 CDS ECA0366 NC_004547.2 418295 418606 D Similar to Escherichia coli O6 hypothetical protein c3274 SWALL:AAN81723 (EMBL:AE016765) (103 aa) fasta scores: E(): 2.1e-22, 55.34% id in 103 aa; hypothetical protein 418295..418606 Pectobacterium atrosepticum SCRI1043 2884668 YP_048493.1 CDS ECA0367 NC_004547.2 418603 419019 D Similar to Escherichia coli O6 hypothetical protein YgjM c3273 SWALL:AAN81722 (EMBL:AE016765) (139 aa) fasta scores: E(): 1.1e-21, 50% id in 134 aa; DNA-binding protein 418603..419019 Pectobacterium atrosepticum SCRI1043 2884669 YP_048494.1 CDS ECA0368 NC_004547.2 419222 419680 D No significant database matches.; hypothetical protein 419222..419680 Pectobacterium atrosepticum SCRI1043 2883963 YP_048495.1 CDS ECA0369 NC_004547.2 419778 421130 R Similar to Rhizobium meliloti amino acid decarboxylase, pyridoxal-dependent protein rb1241 SWALL:Q92U95 (EMBL:AL603646) (473 aa) fasta scores: E(): 3.5e-54, 42.5% id in 440 aa, and to Polyangium cellulosum aromatic amino acid decarboxylase Ddc SWALL:Q9L402 (EMBL:AJ270937) (512 aa) fasta scores: E(): 1.4e-17, 22.95% id in 453 aa; pyridoxal-dependent decarboxylase complement(419778..421130) Pectobacterium atrosepticum SCRI1043 2883964 YP_048496.1 CDS ECA0370 NC_004547.2 421164 422444 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1352 pa1352 SWALL:Q9I3Z2 (EMBL:AE004564) (403 aa) fasta scores: E(): 8.6e-83, 60.45% id in 397 aa, and to Escherichia coli hypothetical protein YgaY SWALL:YGAY_ECOLI (SWALL:P76628) (394 aa) fasta scores: E(): 1.5e-55, 41.17% id in 391 aa. Note that redicted start site of this feature is around 23 AA upstream of that predicted for its ortholgues.; hypothetical protein complement(421164..422444) Pectobacterium atrosepticum SCRI1043 2883965 YP_048497.1 CDS ECA0371 NC_004547.2 422598 423044 D Similar to Pseudomonas putida conserved hypothetical protein pp0502 SWALL:AAN66130 (EMBL:AE016775) (147 aa) fasta scores: E(): 8e-26, 55.14% id in 136 aa. Note that there are no significant database matches to enterobacterial species.; transcriptional regulator 422598..423044 Pectobacterium atrosepticum SCRI1043 2883828 YP_048498.1 CDS ECA0372 NC_004547.2 423054 423548 D Similar to Escherichia coli, and Shigella flexneri hypothetical protein YhbP SWALL:AAN44662 (EMBL:U18997) (147 aa) fasta scores: E(): 2.2e-29, 54.54% id in 143 aa; hypothetical protein 423054..423548 Pectobacterium atrosepticum SCRI1043 2883829 YP_048499.1 CDS ECA0373 NC_004547.2 423578 424231 D Similar to Salmonella typhi hypothetical protein sty3451 SWALL:Q8Z3I6 (EMBL:AL627278) (211 aa) fasta scores: E(): 2.2e-41, 55.76% id in 208 aa, and to Escherichia coli O157:H7 hypothetical protein YraR SWALL:Q8XAA0 (EMBL:AE005544) (226 aa) fasta scores: E(): 2.7e-41, 54.8% id in 208 aa; hypothetical protein 423578..424231 Pectobacterium atrosepticum SCRI1043 2883830 YP_048500.1 CDS nrdG NC_004547.2 424243 424707 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(424243..424707) Pectobacterium atrosepticum SCRI1043 2881811 YP_048501.1 CDS nrdD NC_004547.2 424789 426927 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(424789..426927) Pectobacterium atrosepticum SCRI1043 2881661 YP_048502.1 CDS ECA0376 NC_004547.2 427331 428068 R Similar to Pseudomonas aeruginosa hypothetical protein pa1733 SWALL:Q9I304 (EMBL:AE004599) (243 aa) fasta scores: E(): 5.7e-55, 59.25% id in 243 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein complement(427331..428068) Pectobacterium atrosepticum SCRI1043 2883511 YP_048503.1 CDS ECA0377 NC_004547.2 428092 428913 R Similar to Pseudomonas aeruginosa hypothetical protein pa1732 SWALL:Q9I305 (EMBL:AE004599) (266 aa) fasta scores: E(): 9.2e-52, 51.1% id in 272 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein complement(428092..428913) Pectobacterium atrosepticum SCRI1043 2883512 YP_048504.1 CDS ECA0378 NC_004547.2 428910 429839 R Similar to Pseudomonas aeruginosa hypothetical protein pa1731 SWALL:Q9I306 (EMBL:AE004599) (317 aa) fasta scores: E(): 1.3e-51, 45.57% id in 316 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein complement(428910..429839) Pectobacterium atrosepticum SCRI1043 2883513 YP_048505.1 CDS ECA0379 NC_004547.2 429833 431263 R Similar to Pseudomonas aeruginosa hypothetical protein pa1730 SWALL:Q9I307 (EMBL:AE004599) (470 aa) fasta scores: E(): 9.3e-133, 68.88% id in 466 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein complement(429833..431263) Pectobacterium atrosepticum SCRI1043 2883402 YP_048506.1 CDS ECA0380 NC_004547.2 431494 431880 R Similar to Salmonella typhimurium, and Salmonella typhi YjgF SWALL:Q9X445 (EMBL:AF095578) (128 aa) fasta scores: E(): 1.5e-36, 82.81% id in 128 aa, and to Yersinia pestis hypothetical protein Ypo3590 SWALL:Q8ZB37 (EMBL:AJ414157) (128 aa) fasta scores: E(): 5.4e-37, 83.59% id in 128 aa; endoribonuclease complement(431494..431880) Pectobacterium atrosepticum SCRI1043 2883403 YP_048507.1 CDS pyrI NC_004547.2 431979 432443 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(431979..432443) Pectobacterium atrosepticum SCRI1043 2882684 YP_048508.1 CDS pyrB NC_004547.2 432459 433394 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(432459..433394) Pectobacterium atrosepticum SCRI1043 2882668 YP_048509.1 CDS ECA0383 NC_004547.2 433843 434310 D Similar to Yersinia pestis hypothetical protein ypo3447 SWALL:AAM84326 (EMBL:AJ414157) (152 aa) fasta scores: E(): 6.9e-49, 83.89% id in 149 aa, and to Escherichia coli, and Shigella flexneri protein Yjgk SWALL:YJGK_ECOLI (SWALL:P39335) (150 aa) fasta scores: E(): 1.1e-39, 70.47% id in 149 aa; hypothetical protein 433843..434310 Pectobacterium atrosepticum SCRI1043 2883404 YP_048510.1 CDS argI NC_004547.2 434357 435364 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I complement(434357..435364) Pectobacterium atrosepticum SCRI1043 2884138 YP_048511.1 CDS ECA0385 NC_004547.2 435526 435951 D Similar to Yersinia pestis hypothetical protein ypo3445 SWALL:AAM84328 (EMBL:AJ414157) (143 aa) fasta scores: E(): 1e-40, 80.42% id in 143 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YjgD SWALL:YJGD_ECOLI (SWALL:P37163) (138 aa) fasta scores: E(): 2.9e-37, 75.88% id in 141 aa; hypothetical protein 435526..435951 Pectobacterium atrosepticum SCRI1043 2883322 YP_048512.1 CDS ECA0386 NC_004547.2 436144 436647 R Similar to Yersinia pestis acetyltransferase ypo3444 SWALL:Q8ZBH0 (EMBL:AJ414157) (167 aa) fasta scores: E(): 2.7e-48, 74.84% id in 167 aa, and to Escherichia coli hypothetical acetyltransferase YjgM SWALL:YJGM_ECOLI (SWALL:P39337) (167 aa) fasta scores: E(): 3.4e-41, 67.94% id in 156 aa.; acetyltransferase complement(436144..436647) Pectobacterium atrosepticum SCRI1043 2883323 YP_048513.1 CDS ECA0387 NC_004547.2 437057 438238 D Similar to Yersinia pestis membrane protein ypo0399 SWALL:Q8ZIT9 (EMBL:AJ414142) (398 aa) fasta scores: E(): 2.2e-94, 59.04% id in 398 aa; hypothetical protein 437057..438238 Pectobacterium atrosepticum SCRI1043 2883324 YP_048514.1 CDS ECA0388 NC_004547.2 438255 439292 D Similar to Yersinia pestis m48 peptidase family protein ypo0398 SWALL:AAM87329 (EMBL:AJ414142) (348 aa) fasta scores: E(): 4.5e-79, 59.88% id in 344 aa.; peptidase 438255..439292 Pectobacterium atrosepticum SCRI1043 2883197 YP_048515.1 CDS ECA0389 NC_004547.2 439647 440726 D Similar to Bradyrhizobium japonicum protein blr6677 SWALL:BAC51942 (EMBL:AP005959) (353 aa) fasta scores: E(): 9.7e-77, 55.45% id in 339 aa, and to Caulobacter crescentus hydrolase, alpha/beta hydrolase fold family cc3204 SWALL:Q9A3K0 (EMBL:AE005984) (358 aa) fasta scores: E(): 1.5e-48, 44.41% id in 331 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein 439647..440726 Pectobacterium atrosepticum SCRI1043 2883198 YP_048516.1 CDS ECA0390 NC_004547.2 440934 442553 D Similar to Ralstonia solanacearum probable methyl-accepting chemotaxis transducer transmembrane protein rsc1460 SWALL:Q8XZE1 (EMBL:AL646064) (513 aa) fasta scores: E(): 3.5e-62, 42.3% id in 520 aa, and to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 5.4e-57, 39.42% id in 553 aa.; methyl-accepting chemotaxis protein 440934..442553 Pectobacterium atrosepticum SCRI1043 2883199 YP_048517.1 CDS ECA0391 NC_004547.2 442927 444705 D Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 9.6e-40, 29.33% id in 559 aa, and to Yersinia pestis hemolysin activator protein ypo2491 or y1696 SWALL:Q8ZDR5 (EMBL:AJ414152) (562 aa) fasta scores: E(): 8.5e-141, 63.86% id in 559 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 2.8e-26, 26.52% id in 524 aa; activator or transporter protein of hemolysin-like protein 442927..444705 Pectobacterium atrosepticum SCRI1043 2882910 YP_048518.1 CDS ECA0394 NC_004547.2 451996 452394 D Similar to uncultured bacterium orf118 SWALL:AAN16074 (EMBL:AY129391) (117 aa) fasta scores: E(): 1.8e-07, 32.2% id in 118 aa. No other significant database matches.; hypothetical protein 451996..452394 Pectobacterium atrosepticum SCRI1043 2882912 YP_048519.1 CDS kptA NC_004547.2 452395 452937 R Similar to Escherichia coli RNA 2'-phosphotransferase KptA or b4331 SWALL:KPTA_ECOLI (SWALL:P39380) (184 aa) fasta scores: E(): 2.6e-38, 54.8% id in 177 aa; RNA 2'-phosphotransferase complement(452395..452937) Pectobacterium atrosepticum SCRI1043 2883971 YP_048520.1 CDS ECA0396 NC_004547.2 453261 454961 D Similar to Yersinia pestis hypothetical protein Ypo2486 SWALL:Q8ZDS0 (EMBL:AJ414152) (677 aa) fasta scores: E(): 5.9e-27, 40.91% id in 479 aa, and to Escherichia coli O6 hypothetical protein c1207 SWALL:Q8FIZ4 (EMBL:AE016758) (537 aa) fasta scores: E(): 2.9e-22, 43.51% id in 347 aa; hemolysin-like protein 453261..454961 Pectobacterium atrosepticum SCRI1043 2882239 YP_048521.1 CDS ECA0397 NC_004547.2 454963 455337 D No significant database matches.; hypothetical protein 454963..455337 Pectobacterium atrosepticum SCRI1043 2882240 YP_048522.1 CDS ECA0398 NC_004547.2 455619 456002 D No significant database matches.; hypothetical protein 455619..456002 Pectobacterium atrosepticum SCRI1043 2882241 YP_048523.1 CDS ECA0399 NC_004547.2 456048 456269 R Similar to Shigella flexneri orf, partial conserved hypothetical protein sf0591 SWALL:AAN42233 (EMBL:AE015090) (95 aa) fasta scores: E(): 6.2e-05, 44.44% id in 54 aa. No other significant database matches.; hypothetical protein complement(456048..456269) Pectobacterium atrosepticum SCRI1043 2885465 YP_048524.1 CDS ECA0399A NC_004547.2 <456305 >456442 D Similar to Yersinia pestis hemagglutinin-like secreted protein y1701 SWALL:AAM85269 (EMBL:AE013774) (681 aa) fasta scores: E(): 1.7e-06, 68.29% id in 41 aa, and to Escherichia coli O6 hypothetical protein c1207 SWALL:AAN79669 (EMBL:AE016758) (537 aa) fasta scores: E(): 2.3e-06, 64.28% id in 42 aa; hemagglutinin-like protein (partial) <456305..>456442 Pectobacterium atrosepticum SCRI1043 2885466 YP_048525.1 CDS ECA0400 NC_004547.2 456426 456719 D Similar to Human herpesvirus 4 capsid protein vp26 bfrf3 SWALL:CAD53401 (EMBL:AJ507799) (176 aa) fasta scores: E(): 5.7, 33.73% id in 83 aa, and to Epstein-barr virus capsid protein vp26 bfrf3 SWALL:VP26_EBV (SWALL:P14348) (176 aa) fasta scores: E(): 5.7, 33.73% id in 83 aa; No significant database matches.; phage-like protein 456426..456719 Pectobacterium atrosepticum SCRI1043 2885467 YP_048526.1 CDS ECA0401 NC_004547.2 457211 457861 R Similar to Streptococcus mutans conserved hypothetical protein smu.1642C SWALL:AAN59281 (EMBL:AE014994) (210 aa) fasta scores: E(): 3.5e-19, 35.92% id in 206 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein complement(457211..457861) Pectobacterium atrosepticum SCRI1043 2881765 YP_048527.1 CDS valS NC_004547.2 458055 460910 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(458055..460910) Pectobacterium atrosepticum SCRI1043 2882787 YP_048528.1 CDS holC NC_004547.2 460923 461372 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(460923..461372) Pectobacterium atrosepticum SCRI1043 2882118 YP_048529.1 CDS pepA NC_004547.2 461737 463248 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(461737..463248) Pectobacterium atrosepticum SCRI1043 2885061 YP_048530.1 CDS ECA0405 NC_004547.2 463531 464646 D Similar to Salmonella typhimurium permease YjgP SWALL:Q8ZK27 (EMBL:AE008910) (366 aa) fasta scores: E(): 1.1e-107, 73.33% id in 360 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YjgP SWALL:YJGP_ECOLI (SWALL:P39340) (366 aa) fasta scores: E(): 1.3e-106, 73.46% id in 358 aa. YjgP belongs to a family of predicted permeases but there is no experimental evidence of this.; permease 463531..464646 Pectobacterium atrosepticum SCRI1043 2881766 YP_048531.1 CDS ECA0406 NC_004547.2 464646 465722 D Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein YjgQ SWALL:YJGQ_ECOLI (SWALL:P39341) (360 aa) fasta scores: E(): 2.6e-108, 77.24% id in 356 aa, and to Salmonella typhimurium permease YjgQ SWALL:Q8ZK26 (EMBL:AE008910) (360 aa) fasta scores: E(): 2.6e-109, 78.37% id in 356 aa.YjgQ belongs to a family of predicted permeases but there is no experimental evidence of this.; permease 464646..465722 Pectobacterium atrosepticum SCRI1043 2881767 YP_048532.1 CDS ECA0407 NC_004547.2 <466210 466377 D Similar to Shigella flexneri integrase intB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 5.6e-17, 81.48% id in 54 aa, and to Escherichia coli integrase inT SWALL:Q93SE7 (EMBL:AJ278144) (394 aa) fasta scores: E(): 1.7e-15, 70.9% id in 55 aa.; integrase (partial) <466210..466377 Pectobacterium atrosepticum SCRI1043 2881510 YP_048533.1 CDS ECA0408 NC_004547.2 466558 466815 D Similar to Pseudomonas resinovorans hypothetical protein SWALL:BAC41561 (EMBL:AB088420) (133 aa) fasta scores: E(): 5.7e-08, 41.97% id in 81 aa, and to Escherichia coli O157:H7 plasmid po157 DNA, complete sequence l7010 SWALL:O82927 (EMBL:AB011549) (94 aa) fasta scores: E(): 1.7e-06, 38.66% id in 75 aa; plasmid-like protein 466558..466815 Pectobacterium atrosepticum SCRI1043 2881511 YP_048534.1 CDS ECA0409 NC_004547.2 466819 467094 D Similar to Escherichia coli O157:H7 plasmid po157 DNA, complete sequence l7011 SWALL:O82928 (EMBL:AB011549) (91 aa) fasta scores: E(): 9.3e-12, 42.85% id in 91 aa, and to Shigella sonnei YacB protein yacB SWALL:Q9Z4G4 (EMBL:AB021078) (93 aa) fasta scores: E(): 0.63, 30% id in 90 aa; plasmid-like protein 466819..467094 Pectobacterium atrosepticum SCRI1043 2881512 YP_048535.1 CDS ECA0410 NC_004547.2 467142 467654 D Similar to Corynebacterium glutamicum shikimate kinase Arok or cgl1622 SWALL:AROK_CORGL (SWALL:Q9X5D1) (169 aa) fasta scores: E(): 0.12, 26.62% id in 169 aa, and to Xanthomonas campestris hypothetical protein Xcc0737 SWALL:Q8PCI9 (EMBL:AE012173) (148 aa) fasta scores: E(): 2e-19, 52.38% id in 126 aa; kinase 467142..467654 Pectobacterium atrosepticum SCRI1043 2881528 YP_048536.1 CDS ECA0413 NC_004547.2 469396 472884 R Weakly similar to Bacillus subtilis DNA-binding protein YobI SWALL:O34784 (EMBL:AF027868) (1201 aa) fasta scores: E(): 2.7, 21.21% id in 773 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein complement(469396..472884) Pectobacterium atrosepticum SCRI1043 2881530 YP_048537.1 CDS ECA0414 NC_004547.2 473425 473673 R Similar to Bacteriophage 186 late control protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 1.1e-08, 52.38% id in 63 aa, and to Salmonella typhi bacteriophage gene regulatory protein sty4826 SWALL:Q8Z107 (EMBL:AL627283) (79 aa) fasta scores: E(): 3.2e-12, 57.57% id in 66 aa. Also similar to ECA0833 (41.818% id. in 55 aa overlap), and to ECA3454 (84.146% id. in 50 aa overlap), and to ECA2599 (39.726% id. in 51 aa overlap).; bacteriophage regulatory protein complement(473425..473673) Pectobacterium atrosepticum SCRI1043 2881299 YP_048538.1 CDS ECA0420 NC_004547.2 476014 477135 D Similar to Escherichia coli O6 hypothetical protein ycfd ycfd or c1480 SWALL:AAN79949 (EMBL:AE016759) (376 aa) fasta scores: E(): 1.3e-105, 66.12% id in 372 aa; hypothetical protein 476014..477135 Pectobacterium atrosepticum SCRI1043 2881399 YP_048539.1 CDS ECA0421 NC_004547.2 477432 478562 D Similar to Zymomonas mobilis hypothetical protein SWALL:AAL36135 (EMBL:AY057845) (394 aa) fasta scores: E(): 2.9e-49, 41.3% id in 368 aa. Note that there are no significant database matches to enterobacterial species.; exported lipase 477432..478562 Pectobacterium atrosepticum SCRI1043 2881400 YP_048540.1 CDS ECA0422 NC_004547.2 478617 479807 R Similar to Vibrio vulnificus ABC-type multidrug transport system, permease component vv12691 SWALL:AAO11038 (EMBL:AE016806) (381 aa) fasta scores: E(): 1.2e-62, 45.26% id in 391 aa; hypothetical protein complement(478617..479807) Pectobacterium atrosepticum SCRI1043 2881705 YP_048541.1 CDS ECA0423 NC_004547.2 479801 480919 R Similar to Vibrio cholerae hypothetical protein Vc1608 vc1608 SWALL:Q9KRM8 (EMBL:AE004238) (387 aa) fasta scores: E(): 3.2e-46, 38.08% id in 365 aa; hypothetical protein complement(479801..480919) Pectobacterium atrosepticum SCRI1043 2881706 YP_048542.1 CDS ECA0424 NC_004547.2 480919 481917 R Similar to Vibrio cholerae hypothetical protein vc1607 SWALL:Q9KRM9 (EMBL:AE004238) (324 aa) fasta scores: E(): 1.5e-72, 62.03% id in 324 aa.; hypothetical protein complement(480919..481917) Pectobacterium atrosepticum SCRI1043 2881707 YP_048543.1 CDS ECA0425 NC_004547.2 481914 483335 R Similar to Vibrio cholerae hypothetical protein Vc1606 SWALL:Q9KRN0 (EMBL:AE004238) (476 aa) fasta scores: E(): 6e-69, 44.34% id in 451 aa, and to Shewanella oneidensis outer membrane efflux protein so4090 SWALL:AAN57064 (EMBL:AE015839) (473 aa) fasta scores: E(): 1.2e-68, 45.11% id in 450 aa; outer membrane efflux protein complement(481914..483335) Pectobacterium atrosepticum SCRI1043 2882567 YP_048544.1 CDS aspA1 NC_004547.2 483705 485144 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(483705..485144) Pectobacterium atrosepticum SCRI1043 2885552 YP_048545.1 CDS ECA0427 NC_004547.2 485398 486354 R Similar to Brucella melitensis transcriptional regulatory protein, LysR family bmei0116 SWALL:Q8YJG7 (EMBL:AE009454) (308 aa) fasta scores: E(): 1.7e-24, 29.18% id in 305 aa; LysR family transcriptional regulator complement(485398..486354) Pectobacterium atrosepticum SCRI1043 2882568 YP_048546.1 CDS ECA0428 NC_004547.2 487122 488642 D Similar to Porphyromonas gingivalis immunogenic 23 kDa lipoprotein pg3 SWALL:Q9XCA4 (EMBL:AF145799) (223 aa) fasta scores: E(): 2.3e-10, 32.2% id in 236 aa, and to Escherichia coli hypothetical lipoprotein YiaD precursor SWALL:YIAD_ECOLI (SWALL:P37665) (219 aa) fasta scores: E(): 1.5e-09, 35.13% id in 222 aa.; porin 487122..488642 Pectobacterium atrosepticum SCRI1043 2882569 YP_048547.1 CDS ECA0429 NC_004547.2 488659 490308 D No significant database matches.; hypothetical protein 488659..490308 Pectobacterium atrosepticum SCRI1043 2882503 YP_048548.1 CDS ECA0430 NC_004547.2 490305 491135 D No significant database matches.; hypothetical protein 490305..491135 Pectobacterium atrosepticum SCRI1043 2882504 YP_048549.1 CDS ECA0431 NC_004547.2 491595 492941 D No significant database matches.; hypothetical protein 491595..492941 Pectobacterium atrosepticum SCRI1043 2882505 YP_048550.1 CDS ECA0432 NC_004547.2 492953 493744 R Similar to Neisseria polysaccharea hypothetical protein SWALL:AAO17344 (EMBL:AF542178) (249 aa) fasta scores: E(): 4e-35, 38.97% id in 254 aa; hypothetical protein complement(492953..493744) Pectobacterium atrosepticum SCRI1043 2881708 YP_048551.1 CDS ECA0433 NC_004547.2 493897 494994 D Similar to Pseudomonas aeruginosa hypothetical protein pa2695 SWALL:Q9I0E7 (EMBL:AE004697) (367 aa) fasta scores: E(): 4.9e-93, 67.61% id in 352 aa, and to Escherichia coli hypothetical protein YaiW SWALL:YAIW_ECOLI (SWALL:P77562) (364 aa) fasta scores: E(): 4.5e-89, 66.02% id in 365 aa.; lipoprotein 493897..494994 Pectobacterium atrosepticum SCRI1043 2881709 YP_048552.1 CDS ECA0434 NC_004547.2 495149 497098 R Similar to Rahnella aquatilis methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 2.3e-40, 34.6% id in 500 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar or CheM SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 8.8e-39, 36.2% id in 464 aa; methyl-accepting chemotaxis protein complement(495149..497098) Pectobacterium atrosepticum SCRI1043 2881710 YP_048553.1 CDS mgtB NC_004547.2 497561 500272 R Similar to Salmonella typhimurium Mg(2+) transport ATPase MgtB or stm3763 SWALL:ATMB_SALTY (SWALL:P22036) (908 aa) fasta scores: E(): 0, 70.62% id in 909 aa; magnesium transport ATPase complement(497561..500272) Pectobacterium atrosepticum SCRI1043 2883178 YP_048554.1 CDS ECA0436 NC_004547.2 500719 502296 R Similar to Rahnella aquatilis methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 6.9e-55, 40.22% id in 527 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar or Chem SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 4.7e-51, 40.61% id in 517 aa; methyl-accepting chemotaxis protein complement(500719..502296) Pectobacterium atrosepticum SCRI1043 2881269 YP_048555.1 CDS ECA0437 NC_004547.2 502735 503049 R Similar to Yersinia pestis hypothetical protein ypo0326 SWALL:Q8ZJ05 (EMBL:AJ414142) (104 aa) fasta scores: E(): 1.3e-33, 75% id in 104 aa, and to Escherichia coli hypothetical protein yiil SWALL:YIIL_ECOLI (SWALL:P32156) (104 aa) fasta scores: E(): 3.4e-33, 73.78% id in 103 aa; hypothetical protein complement(502735..503049) Pectobacterium atrosepticum SCRI1043 2881270 YP_048556.1 CDS rhaD NC_004547.2 503193 504017 R Similar to Escherichia coli rhamnulose-1-phosphate aldolase RhaD or b3902 SWALL:RHAD_ECOLI (SWALL:P32169) (274 aa) fasta scores: E(): 7.4e-86, 74.63% id in 272 aa; rhamnulose-1-phosphate aldolase complement(503193..504017) Pectobacterium atrosepticum SCRI1043 2884838 YP_048557.1 CDS rhaA NC_004547.2 504022 505284 R catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase complement(504022..505284) Pectobacterium atrosepticum SCRI1043 2884836 YP_048558.1 CDS rhaB NC_004547.2 505281 506771 R catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase complement(505281..506771) Pectobacterium atrosepticum SCRI1043 2884837 YP_048559.1 CDS rhaS NC_004547.2 507088 507927 D activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 507088..507927 Pectobacterium atrosepticum SCRI1043 2884603 YP_048560.1 CDS rhaR NC_004547.2 507952 508806 D Similar to Escherichia coli L-rhamnose operon transcriptional activator RhaR or RhaC1 or b3906 SWALL:RHAR_ECOLI (SWALL:P09378) (312 aa) fasta scores: E(): 1.4e-50, 46.95% id in 279 aa; L-rhamnose operon transcriptional activator 507952..508806 Pectobacterium atrosepticum SCRI1043 2884602 YP_048561.1 CDS ECA0443 NC_004547.2 508848 509102 R Similar to Escherichia coli, and Shigella flexneri hypothetical protein YoeB SWALL:YOEB_ECOLI (SWALL:P56605) (84 aa) fasta scores: E(): 8.2e-31, 85.71% id in 84 aa.; hypothetical protein complement(508848..509102) Pectobacterium atrosepticum SCRI1043 2881271 YP_048562.1 CDS ECA0444 NC_004547.2 509099 509350 R Antitoxin that counteracts the effect of the YoeB toxin; antitoxin YefM complement(509099..509350) Pectobacterium atrosepticum SCRI1043 2881384 YP_048563.1 CDS ECA0445 NC_004547.2 509425 511134 R Similar to Bradyrhizobium japonicum ABC transporter ATP-binding protein blr1604 SWALL:BAC46869 (EMBL:AP005940) (626 aa) fasta scores: E(): 4.6e-90, 49.21% id in 573 aa, and to Agrobacterium tumefaciens MoaD SWALL:O50270 (EMBL:AF242881) (588 aa) fasta scores: E(): 2.2e-61, 39.78% id in 553 aa; ABC transporter ATP-binding protein complement(509425..511134) Pectobacterium atrosepticum SCRI1043 2881385 YP_048564.1 CDS ECA0446 NC_004547.2 511131 511997 R Similar to Xanthomonas axonopodis ABC transporter permease OppC SWALL:Q8PP30 (EMBL:AE011717) (294 aa) fasta scores: E(): 8.7e-38, 43.26% id in 282 aa; ABC transporter permease complement(511131..511997) Pectobacterium atrosepticum SCRI1043 2881386 YP_048565.1 CDS ECA0447 NC_004547.2 511990 512949 R Similar to Xanthomonas axonopodis ABC transporter permease oppC SWALL:Q8PP31 (EMBL:AE011717) (325 aa) fasta scores: E(): 2e-42, 43.27% id in 305 aa, and to Salmonella typhi hypothetical ABC transporter permease protein yliC SWALL:Q8Z862 (EMBL:AL627268) (306 aa) fasta scores: E(): 1.1e-34, 36.36% id in 308 aa; ABC transporter permease complement(511990..512949) Pectobacterium atrosepticum SCRI1043 2885242 YP_048566.1 CDS ECA0448 NC_004547.2 512927 514540 R Similar to Xanthomonas axonopodis ABC transporter oligopeptide binding protein oppa or xac0856 SWALL:Q8PP32 (EMBL:AE011717) (538 aa) fasta scores: E(): 9.5e-59, 33.84% id in 526 aa, and to Escherichia coli O157:H7 periplasmic binding protein for nickel nika or z4868 or ecs4343 SWALL:Q8X5U3 (EMBL:AE005572) (524 aa) fasta scores: E(): 9.3e-27, 26.4% id in 534 aa; ABC transporter extracellular solute binding protein complement(512927..514540) Pectobacterium atrosepticum SCRI1043 2885243 YP_048567.1 CDS ECA0449 NC_004547.2 515161 515775 D Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YagU SWALL:YAGU_ECOLI (SWALL:P77262) (204 aa) fasta scores: E(): 1.6e-77, 88.23% id in 204 aa; hypothetical protein 515161..515775 Pectobacterium atrosepticum SCRI1043 2885244 YP_048568.1 CDS rhaT NC_004547.2 516073 517107 R transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter complement(516073..517107) Pectobacterium atrosepticum SCRI1043 2884604 YP_048569.1 CDS ECA0451 NC_004547.2 517457 517939 D Similar to Salmonella typhi hypothetical protein yqha sty3326 or t3074 SWALL:YQHA_SALTI (SWALL:Q8Z3Q8) (164 aa) fasta scores: E(): 5.4e-49, 84.41% id in 154 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4574 pa4574 SWALL:Y9H4_PSEAE (SWALL:Q9HVL0) (162 aa) fasta scores: E(): 7.2e-49, 83.11% id in 154 aa; hypothetical protein 517457..517939 Pectobacterium atrosepticum SCRI1043 2885798 YP_048570.1 CDS ECA0452 NC_004547.2 518034 519071 D Similar to Pseudomonas aeruginosa hypothetical protein pa2197 SWALL:Q9I1S0 (EMBL:AE004646) (345 aa) fasta scores: E(): 1.9e-102, 75.94% id in 345 aa, and to Salmonella typhi NADP-dependent oxidoreductase sty1476 SWALL:Q8Z742 (EMBL:AL627270) (345 aa) fasta scores: E(): 1.7e-100, 76.23% id in 345 aa; zinc-binding dehydrogenase 518034..519071 Pectobacterium atrosepticum SCRI1043 2885799 YP_048571.1 CDS ECA0453 NC_004547.2 519168 519398 R Similar to Yersinia pestis membrane protein ypo0754 SWALL:Q8ZHX2 (EMBL:AJ414144) (100 aa) fasta scores: E(): 3.1, 30% id in 60 aa, and to Salmonella typhimurium inner membrane protein yjeo or stm4346 SWALL:Q8ZKB3 (EMBL:AE008904) (104 aa) fasta scores: E(): 0.34, 34% id in 50 aa; hypothetical protein complement(519168..519398) Pectobacterium atrosepticum SCRI1043 2885800 YP_048572.1 CDS ECA0454 NC_004547.2 519485 519781 R Similar to Yersinia pestis membrane protein ypo0754 SWALL:Q8ZHX2 (EMBL:AJ414144) (100 aa) fasta scores: E(): 1.5, 29.89% id in 97 aa, and to Salmonella typhimurium inner membrane protein yjeo or stm4346 SWALL:Q8ZKB3 (EMBL:AE008904) (104 aa) fasta scores: E(): 0.00095, 30.2% id in 96 aa; hypothetical protein complement(519485..519781) Pectobacterium atrosepticum SCRI1043 2885113 YP_048573.1 CDS ECA0455 NC_004547.2 519800 520555 R Similar to Escherichia coli O6 hypothetical protein c3766 SWALL:AAN82210 (EMBL:AE016766) (245 aa) fasta scores: E(): 1.7e-14, 34.93% id in 229 aa.; hypothetical protein complement(519800..520555) Pectobacterium atrosepticum SCRI1043 2885114 YP_048574.1 CDS ECA0456 NC_004547.2 520562 521041 R Similar to Yersinia pestis hypothetical protein ypo2868 SWALL:AAM84938 (EMBL:AJ414154) (159 aa) fasta scores: E(): 2.3e-30, 50.94% id in 159 aa, and to Escherichia coli O6 conserved hypothetical protein c3767 SWALL:AAN82211 (EMBL:AE016766) (159 aa) fasta scores: E(): 2.6e-22, 42.76% id in 159 aa; hypothetical protein complement(520562..521041) Pectobacterium atrosepticum SCRI1043 2885115 YP_048575.1 CDS visC NC_004547.2 521576 522787 R Similar to Escherichia coli protein VisC or b2906 SWALL:VISC_ECOLI (SWALL:P25535) (400 aa) fasta scores: E(): 3.8e-114, 72.43% id in 399 aa; hypothetical protein complement(521576..522787) Pectobacterium atrosepticum SCRI1043 2882695 YP_048576.1 CDS visB NC_004547.2 522816 523994 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(522816..523994) Pectobacterium atrosepticum SCRI1043 2882694 YP_048577.1 CDS pepP NC_004547.2 524040 525365 R exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II complement(524040..525365) Pectobacterium atrosepticum SCRI1043 2885191 YP_048578.1 CDS ECA0460 NC_004547.2 525471 526058 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(525471..526058) Pectobacterium atrosepticum SCRI1043 2884503 YP_048579.1 CDS ECA0461 NC_004547.2 526251 526580 D Similar to Yersinia pestis hypothetical protein ypo0912 SWALL:Q8ZHI1 (EMBL:AJ414145) (109 aa) fasta scores: E(): 2.9e-35, 91.74% id in 109 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YgfE SWALL:YGFE_ECOLI (SWALL:P45580) (109 aa) fasta scores: E(): 3.1e-31, 82.56% id in 109 aa; Z-ring-associated protein 526251..526580 Pectobacterium atrosepticum SCRI1043 2884504 YP_048580.1 CDS ECA0462 NC_004547.2 526894 527520 D Similar to Oryctolagus cuniculus 5-formyltetrahydrofolate cyclo-ligase MthfS SWALL:FTHC_RABIT (SWALL:P80405) (201 aa) fasta scores: E(): 2.9e-11, 28.35% id in 201 aa, and to Yersinia pestis 5-formyltetrahydrofolate cyclo-ligase-family protein ypo0913 or y3300 SWALL:Q8ZHI0 (EMBL:AJ414145) (198 aa) fasta scores: E(): 1.2e-51, 67.87% id in 193 aa; 5-formyltetrahydrofolate cyclo-ligase 526894..527520 Pectobacterium atrosepticum SCRI1043 2884505 YP_048581.1 CDS nadR NC_004547.2 527517 528770 R catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase complement(527517..528770) Pectobacterium atrosepticum SCRI1043 2884927 YP_048582.1 CDS radA NC_004547.2 528905 530287 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(528905..530287) Pectobacterium atrosepticum SCRI1043 2882879 YP_048583.1 CDS serB NC_004547.2 530305 531282 R catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase complement(530305..531282) Pectobacterium atrosepticum SCRI1043 2884403 YP_048584.1 CDS smp NC_004547.2 531439 532134 D Similar to Escherichia coli, and Shigella flexneri protein Smp precursor Smp or b4387 or sf4419 SWALL:SMP_ECOLI (SWALL:P18838) (214 aa) fasta scores: E(): 3.9e-52, 65.72% id in 213 aa; hypothetical protein 531439..532134 Pectobacterium atrosepticum SCRI1043 2884380 YP_048585.1 CDS ECA0467 NC_004547.2 532188 533090 R No significant database matches.; hypothetical protein complement(532188..533090) Pectobacterium atrosepticum SCRI1043 2884766 YP_048586.1 CDS prfC NC_004547.2 533382 534971 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 533382..534971 Pectobacterium atrosepticum SCRI1043 2882308 YP_048587.1 CDS osmY NC_004547.2 535473 536081 D Similar to Escherichia coli, and Escherichia coli O6 osmotically inducible protein Y precursor OsmY or b4376 or c5457 SWALL:OSMY_ECOLI (SWALL:P27291) (201 aa) fasta scores: E(): 6.7e-31, 56.93% id in 202 aa; periplasmic protein 535473..536081 Pectobacterium atrosepticum SCRI1043 2882707 YP_048588.1 CDS ECA0470 NC_004547.2 536233 536394 D Similar to Escherichia coli O157:H7 hypothetical protein Z5978 SWALL:Q8X479 (EMBL:AE005669) (59 aa) fasta scores: E(): 3.4e-16, 98.11% id in 53 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein stm4562 or sty4912 SWALL:Q8XEW6 (EMBL:AE008914) (59 aa) fasta scores: E(): 4e-16, 96.22% id in 53 aa; hypothetical protein 536233..536394 Pectobacterium atrosepticum SCRI1043 2884767 YP_048589.1 CDS ECA0471 NC_004547.2 536538 536726 D Similar to Xanthomonas axonopodis hypothetical protein xac4007 SWALL:Q8PFH4 (EMBL:AE012049) (69 aa) fasta scores: E(): 6.4e-07, 47.36% id in 57 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri protein YjbJ SWALL:AAN45582 (EMBL:U00006) (71 aa) fasta scores: E(): 0.00014, 37.93% id in 58 aa.; hypothetical protein 536538..536726 Pectobacterium atrosepticum SCRI1043 2884768 YP_048590.1 CDS ECA0472 NC_004547.2 536846 537643 D Similar to Yersinia pestis metalloenzyme ypo0434 SWALL:Q8ZIQ6 (EMBL:AJ414142) (262 aa) fasta scores: E(): 1.3e-62, 64.2% id in 257 aa, and to Escherichia coli deoxyribonuclease YjjV SWALL:YJJV_ECOLI (SWALL:P39408) (259 aa) fasta scores: E(): 1.8e-61, 62.45% id in 253 aa; TatD family deoxyribonuclease 536846..537643 Pectobacterium atrosepticum SCRI1043 2884697 YP_048591.1 CDS ECA0473 NC_004547.2 537938 539215 D Similar to Yersinia pestis Na+ dependent nucleoside transporter-family protein ypo0435 SWALL:Q8ZIQ5 (EMBL:AJ414142) (423 aa) fasta scores: E(): 9.9e-133, 84.39% id in 423 aa; Na+ dependent nucleoside transporter-family protein 537938..539215 Pectobacterium atrosepticum SCRI1043 2884698 YP_048592.1 CDS entD NC_004547.2 539365 540081 D Similar to Escherichia coli 4'-phosphopantetheinyl transferase EntD or b0583 SWALL:ENTD_ECOLI (SWALL:P19925) (209 aa) fasta scores: E(): 4.1e-09, 31.49% id in 181 aa, and to Photorhabdus luminescens NgrA SWALL:Q9AI14 (EMBL:AF288077) (248 aa) fasta scores: E(): 2.9e-24, 34.32% id in 236 aa; enterobactin synthetase subunit D 539365..540081 Pectobacterium atrosepticum SCRI1043 2884863 YP_048593.1 CDS ECA0475 NC_004547.2 540116 542077 R Similar to Escherichia coli colicin I receptor precursor CirA or Cir or FeuA or b2155 SWALL:CIRA_ECOLI (SWALL:P17315) (663 aa) fasta scores: E(): 9.5e-57, 36.61% id in 661 aa, and to Vibrio cholerae iron-regulated outer membrane virulence protein precursor IrgA or vc0475 SWALL:IRGA_VIBCH (SWALL:P27772) (652 aa) fasta scores: E(): 1.1e-48, 29.73% id in 676 aa; TonB-dependent siderophore receptor protein complement(540116..542077) Pectobacterium atrosepticum SCRI1043 2884699 YP_048594.1 CDS ECA0476 NC_004547.2 542160 543410 R Similar to Stigmatella aurantiaca MxcK SWALL:Q9F632 (EMBL:AF299336) (407 aa) fasta scores: E(): 2.9e-29, 32.74% id in 394 aa, and to Azotobacter vinelandii AvxA SWALL:Q8KY99 (EMBL:AF238500) (407 aa) fasta scores: E(): 1.2e-25, 35.04% id in 371 aa; iron transporter complement(542160..543410) Pectobacterium atrosepticum SCRI1043 2884661 YP_048595.1 CDS entC NC_004547.2 543754 544950 D synthesizes isochorismate acid from chorismate; isochorismate synthase 543754..544950 Pectobacterium atrosepticum SCRI1043 2884883 YP_048596.1 CDS entE NC_004547.2 544947 546572 D bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 544947..546572 Pectobacterium atrosepticum SCRI1043 2884864 YP_048597.1 CDS entB NC_004547.2 546583 547458 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri isochorismatase EntB or EntG or b0595 or z0737 or ecs0634 or sf0509 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 1.1e-69, 63.63% id in 286 aa; enterobactin synthetase subunit B 546583..547458 Pectobacterium atrosepticum SCRI1043 2884882 YP_048598.1 CDS entF NC_004547.2 547455 550598 D Similar to Escherichia coli enterobactin synthetase component F EntF or b0586 SWALL:ENTF_ECOLI (SWALL:P11454) (1293 aa) fasta scores: E(): 2.4e-63, 30.4% id in 1069 aa, and to Stigmatella aurantiaca MxcG SWALL:Q9F636 (EMBL:AF299336) (1456 aa) fasta scores: E(): 6.8e-106, 41.03% id in 1065 aa; enterobactin synthetase subunit F 547455..550598 Pectobacterium atrosepticum SCRI1043 2884865 YP_048599.1 CDS entA NC_004547.2 550604 551389 D catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 550604..551389 Pectobacterium atrosepticum SCRI1043 2884881 YP_048600.1 CDS ECA0482 NC_004547.2 551412 557762 D Similar to Bacillus subtilis fengycin synthetase FenE SWALL:O30981 (EMBL:AF023465) (2554 aa) fasta scores: E(): 1.3e-104, 31.95% id in 1546 aa, and to Pseudomonas putida non-ribosomal peptide synthetase domain protein, pp4220 SWALL:AAN69801 (EMBL:AE016789) (2628 aa) fasta scores: E(): 1.1e-112, 31.67% id in 2033 aa; non-ribosomal peptide synthetase 551412..557762 Pectobacterium atrosepticum SCRI1043 2884662 YP_048601.1 CDS ECA0483 NC_004547.2 557759 559873 D Similar to Tolypothrix sp. PCC 7601/1 peptide synthetase TpsA SWALL:Q93IL7 (EMBL:AJ318786) (930 aa) fasta scores: E(): 4.5e-41, 30.3% id in 561 aa, and to Pseudomonas syringae syringomycin biosynthesis enzyme 1 SyrB1 SWALL:Q52400 (EMBL:U25130) (614 aa) fasta scores: E(): 1e-40, 32.3% id in 517 aa; non-ribosomal peptide synthetase 557759..559873 Pectobacterium atrosepticum SCRI1043 2884663 YP_048602.1 CDS ECA0484 NC_004547.2 560026 560256 D No significant database matches. Possible false CDS.; hypothetical protein 560026..560256 Pectobacterium atrosepticum SCRI1043 2884652 YP_048603.1 CDS ECA0485 NC_004547.2 560283 562364 R Similar to Pseudomonas putida hypothetical protein pp5236 SWALL:AAN70801 (EMBL:AE016793) (707 aa) fasta scores: E(): 6.7e-20, 25.88% id in 653 aa, and to Yersinia pestis membrane protein ypo1990 SWALL:Q8ZF06 (EMBL:AJ414150) (703 aa) fasta scores: E(): 3.6e-12, 23.26% id in 533 aa; hypothetical protein complement(560283..562364) Pectobacterium atrosepticum SCRI1043 2884653 YP_048604.1 CDS ECA0486 NC_004547.2 562387 562722 D No significant database matches.; hypothetical protein 562387..562722 Pectobacterium atrosepticum SCRI1043 2884654 YP_048605.1 CDS fom1 NC_004547.2 563152 564084 D Similar to Streptomyces wedmorensis phosphoenolpyruvate phosphomutase Fom1 SWALL:P96074 (EMBL:AB016934) (435 aa) fasta scores: E(): 6.1e-59, 54.26% id in 293 aa, and to Streptomyces hygroscopicus phosphoenolpyruvate phosphomutase BcpB SWALL:PEPM_STRHY (SWALL:P29247) (313 aa) fasta scores: E(): 2.7e-22, 35.39% id in 291 aa; phosphoenolpyruvate phosphomutase 563152..564084 Pectobacterium atrosepticum SCRI1043 2885078 YP_048606.1 CDS fom2 NC_004547.2 564264 565418 D Similar to Streptomyces wedmorensis phosphonopyruvate decarboxylase Fom2 SWALL:Q56190 (EMBL:AB016934) (384 aa) fasta scores: E(): 3.3e-55, 45.5% id in 389 aa, and to Streptomyces viridochromogenes 3-phosphonopyruvate decarboxylase Ppd SWALL:PPD_STRVR (SWALL:O86938) (397 aa) fasta scores: E(): 1.8e-26, 34.56% id in 405 aa; phosphonopyruvate decarboxylase 564264..565418 Pectobacterium atrosepticum SCRI1043 2885079 YP_048607.1 CDS ECA0489 NC_004547.2 565471 566364 D Similar to Escherichia coli 2-hydroxy-3-oxopropionate reductase GlxR or GlxB1 or b0509 SWALL:GLXR_ECOLI (SWALL:P77161) (292 aa) fasta scores: E(): 4.9e-13, 26.16% id in 279 aa, and to Pseudomonas aeruginosa probable 3-hydroxyisobutyrate dehydrogenase pa3312 SWALL:Q9HYT2 (EMBL:AE004753) (296 aa) fasta scores: E(): 3.4e-17, 31.09% id in 283 aa; 2-hydroxy-3-oxopropionate reductase 565471..566364 Pectobacterium atrosepticum SCRI1043 2884816 YP_048608.1 CDS phnG NC_004547.2 566365 566808 D Similar to Escherichia coli PhnG protein PhnG or b4101 SWALL:PHNG_ECOLI (SWALL:P16685) (150 aa) fasta scores: E(): 8.5e-27, 50.68% id in 146 aa; phosphonate metabolism protein 566365..566808 Pectobacterium atrosepticum SCRI1043 2884716 YP_048609.1 CDS phnH NC_004547.2 566824 567396 D Similar to Escherichia coli PhnH protein phnH SWALL:PHNH_ECOLI (SWALL:P16686) (194 aa) fasta scores: E(): 5.7e-26, 41.57% id in 190 aa.; carbon-phosphorus lyase complex subunit 566824..567396 Pectobacterium atrosepticum SCRI1043 2885732 YP_048610.1 CDS phnI NC_004547.2 567396 568499 D Similar to Yersinia pestis PhnI protein SWALL:Q8ZBF7 (EMBL:AJ414157) (392 aa) fasta scores: E(): 3.9e-100, 72.65% id in 362 aa, and to Escherichia coli PhnI SWALL:PHNI_ECOLI (SWALL:P16687) (354 aa) fasta scores: E(): 8.5e-95, 69.46% id in 357 aa; phosphonate metabolism protein 567396..568499 Pectobacterium atrosepticum SCRI1043 2885733 YP_048611.1 CDS phnJ NC_004547.2 568499 569425 D Similar to Escherichia coli O6 PhnJ protein SWALL:AAN83528 (EMBL:AE016771) (309 aa) fasta scores: E(): 1.3e-93, 75.8% id in 310 aa, and to Escherichia coli PhnJ protein SWALL:PHNJ_ECOLI (SWALL:P16688) (281 aa) fasta scores: E(): 6.9e-93, 82.84% id in 274 aa; phosphonate metabolism protein 568499..569425 Pectobacterium atrosepticum SCRI1043 2885734 YP_048612.1 CDS phnK NC_004547.2 569422 570210 D Similar to Escherichia coli phosphonates transport ATP-binding protein PhnK SWALL:PHNK_ECOLI (SWALL:P16678) (252 aa) fasta scores: E(): 6.3e-69, 76.77% id in 254 aa.; phosphonate C-P lyase system protein PhnK 569422..570210 Pectobacterium atrosepticum SCRI1043 2883998 YP_048613.1 CDS phnL NC_004547.2 570232 570948 D Similar to Escherichia coli phosphonates transport ATP-binding protein phnl phnl or b4096 SWALL:PHNL_ECOLI (SWALL:P16679) (226 aa) fasta scores: E(): 2.6e-55, 65.77% id in 225 aa; phosphonate ABC transporter ATP-binding protein 570232..570948 Pectobacterium atrosepticum SCRI1043 2883999 YP_048614.1 CDS phnM NC_004547.2 570938 572074 D Similar to Escherichia coli PhnM SWALL:PHNM_ECOLI (SWALL:P16689) (378 aa) fasta scores: E(): 5.3e-94, 62.96% id in 378 aa; phosphonate metabolism protein 570938..572074 Pectobacterium atrosepticum SCRI1043 2884000 YP_048615.1 CDS phnN NC_004547.2 572077 572643 D Similar to Escherichia coli ATP-binding protein PhnN or b4094 SWALL:PHNN_ECOLI (SWALL:P16690) (185 aa) fasta scores: E(): 2.1e-29, 51.97% id in 177 aa; ribose 1,5-bisphosphokinase 572077..572643 Pectobacterium atrosepticum SCRI1043 2883950 YP_048616.1 CDS phnP NC_004547.2 572685 573470 D required for the use of phosphonates and phosphite as phosphorus sources; carbon-phosphorus lyase complex accessory protein 572685..573470 Pectobacterium atrosepticum SCRI1043 2883951 YP_048617.1 CDS wcaJ NC_004547.2 574080 575378 D Similar to Escherichia coli colanic biosynthesis UDP-glucose lipid carrier transferase WcaJ or b2047 SWALL:WCAJ_ECOLI (SWALL:P71241) (464 aa) fasta scores: E(): 6.8e-69, 43.62% id in 463 aa, and to Klebsiella pneumoniae probable CPS biosynthesis glycosyltransferase SWALL:YC14_KLEPN (SWALL:Q48460) (465 aa) fasta scores: E(): 1e-69, 43.95% id in 455 aa; capsular polysaccharide biosynthesis protein 574080..575378 Pectobacterium atrosepticum SCRI1043 2882359 YP_048618.1 CDS ECA0500 NC_004547.2 575368 576654 D Similar to Methylobacillus sp. 12S EpsL epsL SWALL:BAC55133 (EMBL:AB062506) (401 aa) fasta scores: E(): 4, 20.86% id in 393 aa, and to Vibrio vulnificus conserved hypothetical protein vv12303 SWALL:AAO10679 (EMBL:AE016804) (416 aa) fasta scores: E(): 4e-82, 46.98% id in 415 aa; capsular polysaccharide biosynthesis protein 575368..576654 Pectobacterium atrosepticum SCRI1043 2884817 YP_048619.1 CDS ECA0501 NC_004547.2 576656 577213 D Similar to Vibrio vulnificus polysaccharide export-related protein vv12304 SWALL:AAO10680 (EMBL:AE016804) (174 aa) fasta scores: E(): 5.2e-31, 53.61% id in 166 aa, and to Brucella suis capsule polysaccharide export protein, br0783 SWALL:AAN29712 (EMBL:AE014383) (195 aa) fasta scores: E(): 5.5e-18, 37.91% id in 182 aa; capsular polysaccharide export protein 576656..577213 Pectobacterium atrosepticum SCRI1043 2884818 YP_048620.1 CDS ECA0502 NC_004547.2 577216 579348 D Similar to Rhizobium leguminosarum exopolysaccharide polymerization protein PssP SWALL:O85453 (EMBL:AF067140) (746 aa) fasta scores: E(): 8.1e-10, 23.42% id in 730 aa, and to Vibrio cholerae exopolysaccharide biosynthesis protein, vc0937 SWALL:Q9KTG5 (EMBL:AE004176) (737 aa) fasta scores: E(): 1.4e-44, 28.87% id in 717 aa; capsulatr polysaccharide biosynthesis protein 577216..579348 Pectobacterium atrosepticum SCRI1043 2885743 YP_048621.1 CDS ECA0503 NC_004547.2 579362 580573 D Similar to Rhizobium meliloti succinoglycan biosynthesis transport protein ExoT or rb1074 or smb20950 SWALL:EXOT_RHIME (SWALL:P33699) (494 aa) fasta scores: E(): 0.042, 19.1% id in 335 aa, and to Vibrio vulnificus hypothetical protein vv12306 SWALL:AAO10682 (EMBL:AE016804) (411 aa) fasta scores: E(): 1e-94, 57.56% id in 403 aa, and to Staphylococcus aureus Cap8K SWALL:P72377 (EMBL:U73374) (412 aa) fasta scores: E(): 2.9e-09, 19.75% id in 400 aa; capsular polysaccharide biosynthesis protein 579362..580573 Pectobacterium atrosepticum SCRI1043 2885744 YP_048622.1 CDS ECA0504 NC_004547.2 580570 581952 D Similar to Streptococcus agalactiae CpsH or cpsiaH SWALL:Q8VL36 (EMBL:AF332914) (379 aa) fasta scores: E(): 0.76, 18.88% id in 360 aa, and to Vibrio vulnificus hypothetical protein vv12307 SWALL:AAO10683 (EMBL:AE016804) (466 aa) fasta scores: E(): 7.4e-117, 61.31% id in 455 aa; capsular polysaccharide biosynthesis protein 580570..581952 Pectobacterium atrosepticum SCRI1043 2885745 YP_048623.1 CDS ECA0505 NC_004547.2 581945 582934 D Similar to Vibrio vulnificus glycosyltransferase protein vv12308 SWALL:AAO10684 (EMBL:AE016804) (332 aa) fasta scores: E(): 7.6e-86, 64.81% id in 324 aa, and to Rhizobium meliloti glycosyltransferase protein rb1330 or smb21500 SWALL:Q92U13 (EMBL:AL603646) (347 aa) fasta scores: E(): 5.2e-37, 37.42% id in 326 aa; capsular polysaccharide biosynthesis glycosyl transferase 581945..582934 Pectobacterium atrosepticum SCRI1043 2885703 YP_048624.1 CDS ECA0506 NC_004547.2 582944 584155 D Similar to Klebsiella pneumoniae WbdC SWALL:Q9RMT8 (EMBL:AF189151) (274 aa) fasta scores: E(): 8.9e-10, 28.04% id in 246 aa, and to Vibrio vulnificus glycosyltransferase protein vv12309 SWALL:AAO10685 (EMBL:AE016804) (401 aa) fasta scores: E(): 5e-95, 60% id in 400 aa; capsular polysaccharide biosynthesis glycosyl transferase 582944..584155 Pectobacterium atrosepticum SCRI1043 2885704 YP_048625.1 CDS ECA0507 NC_004547.2 584157 585260 D Similar to Shigella boydii glycosyl transferase wbdS SWALL:Q93CU5 (EMBL:AF402312) (351 aa) fasta scores: E(): 7.8e-11, 23.69% id in 363 aa, and to Vibrio vulnificus glycosyltransferase protein vv12310 SWALL:AAO10686 (EMBL:AE016804) (368 aa) fasta scores: E(): 3.5e-94, 66.85% id in 362 aa; capsular polysaccharide biosynthesis glycosyl transferase 584157..585260 Pectobacterium atrosepticum SCRI1043 2885705 YP_048626.1 CDS ECA0508 NC_004547.2 585284 585691 D Similar to Vibrio vulnificus hypothetical protein vv12311 SWALL:AAO10687 (EMBL:AE016804) (134 aa) fasta scores: E(): 1e-16, 45.92% id in 135 aa.; hypothetical protein 585284..585691 Pectobacterium atrosepticum SCRI1043 2883809 YP_048627.1 CDS ECA0509 NC_004547.2 585730 587124 D Similar to Vibrio vulnificus hypothetical protein vv12312 SWALL:AAO10688 (EMBL:AE016804) (492 aa) fasta scores: E(): 5.5e-105, 53.91% id in 447 aa. No other significant database matches.; hypothetical protein 585730..587124 Pectobacterium atrosepticum SCRI1043 2883810 YP_048628.1 CDS ECA0510 NC_004547.2 587151 587651 D Similar to Escherichia coli k30 capsule biosynthesis cluster, partial sequence SWALL:Q9X4C2 (EMBL:AF104912) (172 aa) fasta scores: E(): 2.1e-15, 36.74% id in 166 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri colanic acid biosynthesis acetyltransferase WcaB or b2058 or z3222 or ecs2863 or sf2122 SWALL:WCAB_ECOLI (SWALL:P77558) (162 aa) fasta scores: E(): 1.8e-14, 40% id in 150 aa; capsular polysacharide biosynthesis transferase 587151..587651 Pectobacterium atrosepticum SCRI1043 2883811 YP_048629.1 CDS ccdA1 NC_004547.2 588090 588308 R Similar to Escherichia coli, and Escherichia coli O157:H7 CcdA protein CcdA or LetA or protein H SWALL:CCDA_ECOLI (SWALL:P05702) (72 aa) fasta scores: E(): 2.8e-10, 53.52% id in 71 aa, and to Shigella flexneri, and Shigella flexneri 2a CcdA protein CcdA SWALL:Q99Q95 (EMBL:AL391753) (72 aa) fasta scores: E(): 5.2e-11, 53.52% id in 71 aa; plasmid maintenance protein CcdA complement(588090..588308) Pectobacterium atrosepticum SCRI1043 2881351 YP_048630.1 CDS ECA0512 NC_004547.2 588326 588568 R Similar to Rhizobium loti hypothetical protein Msr0960 SWALL:Q98LM9 (EMBL:AP002996) (83 aa) fasta scores: E(): 5.9e-06, 43.93% id in 66 aa; hypothetical protein complement(588326..588568) Pectobacterium atrosepticum SCRI1043 2883681 YP_048631.1 CDS ECA0513 NC_004547.2 588670 588912 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 5.5e-15, 71.87% id in 64 aa, and to Bacteriophage Mu DNA-binding protein Ner or CII or 2 SWALL:NER_BPMU (SWALL:P06020) (74 aa) fasta scores: E(): 3.8e-13, 64.61% id in 65 aa. Also similar to ECA0686 (71.233% id. in 73 aa overlap), and to ECA0966 (91.139% id. in 79 aa overlap), and to ECA3206 (82.857% id. in 70 aa overlap.); phage transcriptional regulator 588670..588912 Pectobacterium atrosepticum SCRI1043 2883682 YP_048632.1 CDS ECA0514 NC_004547.2 589060 589218 D No significant database matches.Possible false CDS.; hypothetical protein 589060..589218 Pectobacterium atrosepticum SCRI1043 2883683 YP_048633.1 CDS ECA0515 NC_004547.2 589365 590507 D Similar to Yersinia pestis hypothetical protein ypo0874 SWALL:AAM86806 (EMBL:AJ414145) (380 aa) fasta scores: E(): 7.1e-116, 75.26% id in 380 aa; hypothetical protein 589365..590507 Pectobacterium atrosepticum SCRI1043 2884183 YP_048634.1 CDS ECA0516 NC_004547.2 590844 591731 D Similar to Salmonella typhi hypothetical protein Sty4521 SWALL:Q8Z1M3 (EMBL:AL627282) (344 aa) fasta scores: E(): 1.8e-79, 73.03% id in 293 aa; hypothetical protein 590844..591731 Pectobacterium atrosepticum SCRI1043 2884184 YP_048635.1 CDS ECA0517 NC_004547.2 591724 592413 D Weakly similar to Vibrio cholerae hypothetical protein Vc1703 SWALL:Q9KRD9 (EMBL:AE004248) (163 aa) fasta scores: E(): 5.4, 23.47% id in 115 aa, and to Trypanosoma cruzi ATPase SWALL:Q9BJX3 (EMBL:AF324829) (201 aa) fasta scores: E(): 8.8, 25.73% id in 171 aa; hypothetical protein 591724..592413 Pectobacterium atrosepticum SCRI1043 2884185 YP_048636.1 CDS ECA0518 NC_004547.2 592410 592802 D No significant database matches. Possible false CDS.; hypothetical protein 592410..592802 Pectobacterium atrosepticum SCRI1043 2882920 YP_048637.1 CDS ECA0519 NC_004547.2 592768 594162 D Similar to Escherichia coli, and Shigella flexneri replicative DNA helicase DnaB or GroP or GrpA or b4052 or sf4154 SWALL:DNAB_ECOLI (SWALL:P03005) (471 aa) fasta scores: E(): 1.8e-87, 54.5% id in 455 aa; replicative DNA helicase 592768..594162 Pectobacterium atrosepticum SCRI1043 2882921 YP_048638.1 CDS ECA0520 NC_004547.2 594162 595886 D Similar to Salmonella typhi hypothetical protein Sty4523 SWALL:Q8Z1M1 (EMBL:AL627282) (599 aa) fasta scores: E(): 7.4e-73, 50.24% id in 609 aa; hypothetical protein 594162..595886 Pectobacterium atrosepticum SCRI1043 2882922 YP_048639.1 CDS ECA0521 NC_004547.2 595890 596162 D No significant database matches. Possible false CDS.; hypothetical protein 595890..596162 Pectobacterium atrosepticum SCRI1043 2882826 YP_048640.1 CDS ECA0522 NC_004547.2 596187 596801 D Similar to Yersinia pestis orf 77 ypo1902 or y2407 SWALL:Q9Z381 (EMBL:AL031866) (193 aa) fasta scores: E(): 3.1e-19, 37.27% id in 169 aa, and to Salmonella typhi hypothetical protein sty4526 SWALL:Q8Z1L8 (EMBL:AL627282) (185 aa) fasta scores: E(): 1.3e-32, 51.14% id in 174 aa; hypothetical protein 596187..596801 Pectobacterium atrosepticum SCRI1043 2882827 YP_048641.1 CDS ECA0522A NC_004547.2 596810 597064 D hypothetical protein 596810..597064 Pectobacterium atrosepticum SCRI1043 2882828 YP_048642.1 CDS ECA0523 NC_004547.2 597237 598433 D Similar to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62321 (EMBL:AF440524) (387 aa) fasta scores: E(): 2.7e-25, 31.73% id in 375 aa, and to Salmonella typhi hypothetical protein Sty4528 sty4528 SWALL:Q8Z1L7 (EMBL:AL627282) (447 aa) fasta scores: E(): 3.9e-52, 46.35% id in 384 aa; hypothetical protein 597237..598433 Pectobacterium atrosepticum SCRI1043 2882341 YP_048643.1 CDS ECA0524 NC_004547.2 598803 599600 D Similar to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62197 (EMBL:AF440523) (263 aa) fasta scores: E(): 4e-15, 31.71% id in 227 aa, and to Salmonella typhi hypothetical protein Sty4529 sty4529 SWALL:Q8Z1L6 (EMBL:AL627282) (259 aa) fasta scores: E(): 5.5e-35, 46.22% id in 225 aa; hypothetical protein 598803..599600 Pectobacterium atrosepticum SCRI1043 2882342 YP_048644.1 CDS topB NC_004547.2 599597 601615 D decatenates replicating daughter chromosomes; DNA topoisomerase III 599597..601615 Pectobacterium atrosepticum SCRI1043 2884262 YP_048645.1 CDS ECA0526 NC_004547.2 601919 602095 R Similar to Bacteriophage Mx8 p84 SWALL:Q94MN5 (EMBL:AF396866) (57 aa) fasta scores: E(): 2.3, 30.61% id in 49 aa.; hypothetical protein complement(601919..602095) Pectobacterium atrosepticum SCRI1043 2882343 YP_048646.1 CDS ECA0527 NC_004547.2 602138 602293 R No significant database matches.; hypothetical protein complement(602138..602293) Pectobacterium atrosepticum SCRI1043 2882268 YP_048647.1 CDS ECA0528 NC_004547.2 602464 602955 D Similar to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62175 (EMBL:AF440523) (332 aa) fasta scores: E(): 3.1e-14, 35.61% id in 146 aa, and to Salmonella typhi hypothetical protein Sty4534 SWALL:Q8Z1L5 (EMBL:AL627282) (149 aa) fasta scores: E(): 8.8e-33, 61.22% id in 147 aa; hypothetical protein 602464..602955 Pectobacterium atrosepticum SCRI1043 2882269 YP_048648.1 CDS ECA0531 NC_004547.2 603654 604091 D Similar to Ralstonia solanacearum orf c8 SWALL:O82963 (EMBL:AB015669) (143 aa) fasta scores: E(): 3.1e-33, 64.49% id in 138 aa, and to Synechocystis sp. hypothetical protein Sll1692 SWALL:P73707 (EMBL:D90908) (145 aa) fasta scores: E(): 2.4e-17, 38.29% id in 141 aa; plasmid-like protein 603654..604091 Pectobacterium atrosepticum SCRI1043 2882377 YP_048649.1 CDS pilL NC_004547.2 604237 605553 D Similar to Salmonella dublin, and Salmonella typhi PilL SWALL:Q9K334 (EMBL:AF247502) (414 aa) fasta scores: E(): 8.9e-32, 44.98% id in 449 aa, and to Yersinia pseudotuberculosis PilL SWALL:Q8KR32 (EMBL:AY047316) (356 aa) fasta scores: E(): 3.8e-31, 42.72% id in 440 aa; type IV pilus protein 604237..605553 Pectobacterium atrosepticum SCRI1043 2883691 YP_048650.1 CDS pilM NC_004547.2 605553 605999 D Similar to Escherichia coli, and Salmonella typhimurium PilM protein SWALL:O07371 (EMBL:AB021078) (145 aa) fasta scores: E(): 2.4e-05, 29.45% id in 146 aa.; type IV pilus protein 605553..605999 Pectobacterium atrosepticum SCRI1043 2883692 YP_048651.1 CDS pilN NC_004547.2 606013 607677 D Similar to Escherichia coli, and Salmonella typhimurium lipoprotein PilN SWALL:O07372 (EMBL:AB021078) (560 aa) fasta scores: E(): 8.1e-61, 40.71% id in 560 aa; type IV pilus protein 606013..607677 Pectobacterium atrosepticum SCRI1043 2883654 YP_048652.1 CDS pilP NC_004547.2 608990 609487 D Similar to Escherichia coli PilP protein SWALL:Q9F535 (EMBL:AP002527) (171 aa) fasta scores: E(): 0.12, 23.75% id in 160 aa, and to Salmonella typhi, and Salmonella dublin PilP SWALL:Q9RHF2 (EMBL:AF000001) (156 aa) fasta scores: E(): 0.21, 25.67% id in 148 aa.; type IV pilus protein 608990..609487 Pectobacterium atrosepticum SCRI1043 2883656 YP_048653.1 CDS pilQ NC_004547.2 609487 611046 D Similar to Escherichia coli, and Salmonella typhimurium nucleotide-binding protein PilQ SWALL:O07375 (EMBL:AB021078) (517 aa) fasta scores: E(): 2.7e-42, 32.67% id in 508 aa, and to Yersinia pseudotuberculosis nucleotide-binding protein PilQ SWALL:Q8KR27 (EMBL:AY047316) (517 aa) fasta scores: E(): 4.4e-46, 33.99% id in 506 aa; type IV pilus nucleotide-binding protein 609487..611046 Pectobacterium atrosepticum SCRI1043 2883657 YP_048654.1 CDS ECA0539 NC_004547.2 611015 611167 D Doubtful CDS. No significant database matches.; hypothetical protein 611015..611167 Pectobacterium atrosepticum SCRI1043 2882378 YP_048655.1 CDS pilR NC_004547.2 611178 612215 D Similar to Escherichia coli, and Salmonella typhimurium integral membrane protein PilR SWALL:O07376 (EMBL:AB021078) (365 aa) fasta scores: E(): 7.1e-24, 29.68% id in 347 aa, and to Yersinia pseudotuberculosis integral membrane protein PilR SWALL:Q8KR26 (EMBL:AY047316) (369 aa) fasta scores: E(): 5.5e-23, 30.2% id in 341 aa; type IV pilus protein 611178..612215 Pectobacterium atrosepticum SCRI1043 2883651 YP_048656.1 CDS pilS NC_004547.2 612271 612876 D Similar to Yersinia pseudotuberculosis type IV prepilin PilS SWALL:Q8KR25 (EMBL:AY047316) (195 aa) fasta scores: E(): 1.2e-05, 31.84% id in 179 aa, and to Escherichia coli type IV prepilin PilS SWALL:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.013, 29.05% id in 179 aa.; type IV pilus prepilin 612271..612876 Pectobacterium atrosepticum SCRI1043 2883652 YP_048657.1 CDS pilT NC_004547.2 612883 613401 D Similar to Salmonella typhi, and Salmonella dublin PilT protein PilT or sty4548 SWALL:Q9ZIU8 (EMBL:AF000001) (158 aa) fasta scores: E(): 2.3e-28, 55.07% id in 138 aa, and to Escherichia coli, and Salmonella typhimurium PilT protein PilT SWALL:O07378 (EMBL:AB021078) (186 aa) fasta scores: E(): 7.9e-28, 45.88% id in 170 aa; type IV pilus protein 612883..613401 Pectobacterium atrosepticum SCRI1043 2883653 YP_048658.1 CDS pilU NC_004547.2 613398 614057 D Similar to Shigella sonnei prepilin peptidase PilU SWALL:Q9R2J4 (EMBL:AB021078) (218 aa) fasta scores: E(): 0.029, 26.33% id in 224 aa, and to Salmonella typhimurium prepilin peptidase pPilU SWALL:O07379 (EMBL:AB027308) (218 aa) fasta scores: E(): 0.025, 26.33% id in 224 aa; prepilin peptidase 613398..614057 Pectobacterium atrosepticum SCRI1043 2883575 YP_048659.1 CDS pilV NC_004547.2 614071 615465 D Similar to Escherichia coli PilV protein PilV SWALL:Q04905 (EMBL:X62169) (417 aa) fasta scores: E(): 8.8e-12, 32.47% id in 428 aa, and to Salmonella typhi PilV or sty4550 or t4250 SWALL:O51801 (EMBL:AF000001) (435 aa) fasta scores: E(): 7.5e-13, 26.49% id in 453 aa; type IV pilus prepilin protein 614071..615465 Pectobacterium atrosepticum SCRI1043 2883576 YP_048660.1 CDS ECA0545 NC_004547.2 <615469 615948 D Similar to the C-terminal region of Escherichia coli PilV SWALL:AAL18837 (EMBL:AY258503) (454 aa) fasta scores: E(): 6.6e-10, 36.3% id in 157 aa, and to Salmonella typhi probable variable tail fibre protein sty3691 SWALL:Q8Z343 (EMBL:AL627279) (504 aa) fasta scores: E(): 1.5e-13, 39.58% id in 144 aa; alternative C-terminus for the PilV protein (fragment) <615469..615948 Pectobacterium atrosepticum SCRI1043 2882379 YP_048661.1 CDS ECA0545A NC_004547.2 <615967 >616182 R Similar to Escherichia coli shufflon protein c' SWALL:SHU6_ECOLI (SWALL:P09750) (433 aa) fasta scores: E(): 5e-10, 44.15% id in 77 aa, and to Escherichia coli PilV protein pilV SWALL:Q04905 (EMBL:X62169) (417 aa) fasta scores: E(): 5.7e-10, 43.42% id in 76 aa; alternative C-terminus for the PilV protein (fragment) complement(<615967..>616182) Pectobacterium atrosepticum SCRI1043 2882420 YP_048662.1 CDS rci NC_004547.2 616235 617362 D Similar to Escherichia coli shufflon-specific DNA recombinase Rci SWALL:RCI1_ECOLI (SWALL:P10487) (384 aa) fasta scores: E(): 4.8e-91, 64.36% id in 376 aa; shufflon-specific DNA recombinase 616235..617362 Pectobacterium atrosepticum SCRI1043 2884517 YP_048663.1 CDS ECA0547 NC_004547.2 617411 617902 D Similar to Salmonella typhi exported protein PilK or sty4553 SWALL:Q8Z1K9 (EMBL:AL627282) (155 aa) fasta scores: E(): 2.2e-21, 45.2% id in 146 aa; hypothetical protein 617411..617902 Pectobacterium atrosepticum SCRI1043 2882421 YP_048664.1 CDS traE NC_004547.2 618090 618890 D Similar to Salmonella typhi hypothetical protein sty4554 or t4254 SWALL:Q8Z1K8 (EMBL:AL627282) (291 aa) fasta scores: E(): 1.3e-28, 36.89% id in 290 aa, and to Salmonella typhimurium TraE protein traE SWALL:Q9R2H6 (EMBL:AB027308) (274 aa) fasta scores: E(): 0.00014, 23.13% id in 268 aa; plasmid transfer protein 618090..618890 Pectobacterium atrosepticum SCRI1043 2884254 YP_048665.1 CDS traF NC_004547.2 619034 620236 D Similar to Shigella sonnei TraF protein SWALL:Q9Z4A1 (EMBL:AB021078) (400 aa) fasta scores: E(): 2.9e-81, 55% id in 400 aa, and to Salmonella typhimurium TraF protein SWALL:Q9R2H5 (EMBL:AB027308) (400 aa) fasta scores: E(): 3.4e-81, 54.75% id in 400 aa, and to Escherichia fergusonii TraF SWALL:Q8KR61 (EMBL:AY046057) (401 aa) fasta scores: E(): 1e-61, 44.52% id in 402 aa; plasmid transfer protein 619034..620236 Pectobacterium atrosepticum SCRI1043 2884255 YP_048666.1 CDS ECA0550 NC_004547.2 620303 620752 D Similar to Proteus vulgaris hypothetical protein orf267 SWALL:Q8KJV9 (EMBL:AP004237) (138 aa) fasta scores: E(): 6.8e-24, 57.46% id in 134 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:Q8GHW2 (EMBL:AB088420) (169 aa) fasta scores: E(): 3.9e-05, 39.17% id in 97 aa; plasmid protein 620303..620752 Pectobacterium atrosepticum SCRI1043 2882422 YP_048667.1 CDS ECA0551 NC_004547.2 620819 621118 D Similar to Oceanobacillus iheyensis hypothetical protein ob2071 SWALL:BAC14027 (EMBL:AP004599) (161 aa) fasta scores: E(): 1.4, 27.83% id in 97 aa; hypothetical protein 620819..621118 Pectobacterium atrosepticum SCRI1043 2881401 YP_048668.1 CDS ECA0552 NC_004547.2 621156 621848 D Similar to Salmonella typhi hypothetical protein sty1595 SWALL:Q8Z6W9 (EMBL:AL627270) (227 aa) fasta scores: E(): 1.4e-26, 38.49% id in 226 aa.; hypothetical protein 621156..621848 Pectobacterium atrosepticum SCRI1043 2881402 YP_048669.1 CDS ECA0553 NC_004547.2 621946 622320 D No significant database matches.; hypothetical protein 621946..622320 Pectobacterium atrosepticum SCRI1043 2881403 YP_048670.1 CDS ECA0554 NC_004547.2 622423 623298 D Similar to Salmonella typhi membrane protein sty4557 SWALL:Q8Z1K7 (EMBL:AL627282) (304 aa) fasta scores: E(): 5e-13, 38.41% id in 315 aa; hypothetical protein 622423..623298 Pectobacterium atrosepticum SCRI1043 2881816 YP_048671.1 CDS ECA0555 NC_004547.2 623308 624021 D Similar to Salmonella typhi exported protein sty4558 SWALL:Q8Z1K6 (EMBL:AL627282) (246 aa) fasta scores: E(): 5.1e-52, 56.46% id in 232 aa; hypothetical protein 623308..624021 Pectobacterium atrosepticum SCRI1043 2881817 YP_048672.1 CDS ECA0556 NC_004547.2 624021 624608 D Similar to Salmonella typhi hypothetical protein sty4559 sty4559 or t4257 SWALL:Q8Z1K5 (EMBL:AL627282) (183 aa) fasta scores: E(): 3.2e-31, 50.28% id in 173 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:Q8GQ43 (EMBL:AF440523) (196 aa) fasta scores: E(): 1.9e-21, 41.56% id in 166 aa; hypothetical protein 624021..624608 Pectobacterium atrosepticum SCRI1043 2881818 YP_048673.1 CDS ECA0557 NC_004547.2 624609 625130 D Similar to Salmonella typhi hypothetical protein sty4560 SWALL:Q8Z1K4 (EMBL:AL627282) (166 aa) fasta scores: E(): 1.5e-21, 46.1% id in 154 aa.; hypothetical protein 624609..625130 Pectobacterium atrosepticum SCRI1043 2882145 YP_048674.1 CDS ECA0558 NC_004547.2 625127 625744 D Similar to Salmonella typhi membrane protein sty4561 SWALL:Q8Z1K3 (EMBL:AL627282) (189 aa) fasta scores: E(): 4.7e-36, 55.24% id in 181 aa.; hypothetical protein 625127..625744 Pectobacterium atrosepticum SCRI1043 2882146 YP_048675.1 CDS ECA0559 NC_004547.2 625722 626204 D No significant database matches.; hypothetical protein 625722..626204 Pectobacterium atrosepticum SCRI1043 2882147 YP_048676.1 CDS ECA0560 NC_004547.2 626208 628304 D Similar to Proteus vulgaris DNA transfer orf202 SWALL:Q8L280 (EMBL:AP004237) (655 aa) fasta scores: E(): 7.6e-30, 26.78% id in 687 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62159 (EMBL:AF440523) (729 aa) fasta scores: E(): 1.3e-165, 62.58% id in 703 aa, and to Providencia rettgeri TraD SWALL:Q8RL14 (EMBL:AY090559) (606 aa) fasta scores: E(): 1.2e-14, 30.74% id in 644 aa; plasmid transfer protein 626208..628304 Pectobacterium atrosepticum SCRI1043 2881259 YP_048677.1 CDS ECA0561 NC_004547.2 628306 629061 D Similar to Pseudomonas putida hypothetical 27.8 kDa protein SWALL:Q8VMJ4 (EMBL:AJ344068) (249 aa) fasta scores: E(): 1.3e-35, 41.27% id in 252 aa, and to Salmonella typhi membrane protein sty4563 or t4261 SWALL:Q8Z1K1 (EMBL:AL627282) (252 aa) fasta scores: E(): 4.6e-55, 57.95% id in 245 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62289 (EMBL:AF440524) (249 aa) fasta scores: E(): 1.2e-34, 39.68% id in 252 aa; hypothetical protein 628306..629061 Pectobacterium atrosepticum SCRI1043 2881260 YP_048678.1 CDS ECA0562 NC_004547.2 629084 629278 D No significant database matches.; hypothetical protein 629084..629278 Pectobacterium atrosepticum SCRI1043 2881261 YP_048679.1 CDS ECA0563 NC_004547.2 629420 629959 R No significant database matches.; hypothetical protein complement(629420..629959) Pectobacterium atrosepticum SCRI1043 2881637 YP_048680.1 CDS ECA0564 NC_004547.2 630094 630414 D Similar to Pseudomonas putida transmembrane protein SWALL:Q8VMI7 (EMBL:AJ344068) (123 aa) fasta scores: E(): 1.5e-09, 44.44% id in 99 aa, and to Salmonella typhi hypothetical protein sty4564 sty4564 or t4262 SWALL:Q8Z1K0 (EMBL:AL627282) (90 aa) fasta scores: E(): 2.2e-14, 59.52% id in 84 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62149 (EMBL:AF440523) (127 aa) fasta scores: E(): 4.4e-09, 44.11% id in 102 aa; hypothetical protein 630094..630414 Pectobacterium atrosepticum SCRI1043 2881638 YP_048681.1 CDS ECA0565 NC_004547.2 630416 630655 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:Q8GPT8 (EMBL:AF440524) (77 aa) fasta scores: E(): 1e-05, 31.16% id in 77 aa, and to Salmonella typhi membrane protein sty4565 or t4263 SWALL:Q8Z1J9 (EMBL:AL627282) (79 aa) fasta scores: E(): 3.5e-12, 46.83% id in 79 aa, and to Pseudomonas putida transmembrane protein SWALL:Q8VMI8 (EMBL:AJ344068) (79 aa) fasta scores: E(): 1.4e-05, 29.11% id in 79 aa; hypothetical protein 630416..630655 Pectobacterium atrosepticum SCRI1043 2881639 YP_048682.1 CDS ECA0566 NC_004547.2 630682 631023 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:Q8GPT9 (EMBL:AF440524) (120 aa) fasta scores: E(): 5e-10, 41.59% id in 113 aa, and to Pseudomonas putida hypothetical 12.9 kDa protein SWALL:Q8VMI9 (EMBL:AJ344068) (122 aa) fasta scores: E(): 1.2e-09, 46.8% id in 94 aa; hypothetical protein 630682..631023 Pectobacterium atrosepticum SCRI1043 2881711 YP_048683.1 CDS ECA0567 NC_004547.2 631033 631395 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:Q8GPU0 (EMBL:AF440524) (131 aa) fasta scores: E(): 1.1e-07, 37.39% id in 123 aa, and to Xanthomonas axonopodis hypothetical protein Xac2271 SWALL:Q8PKA4 (EMBL:AE011864) (137 aa) fasta scores: E(): 4.4e-08, 37.3% id in 126 aa; hypothetical protein 631033..631395 Pectobacterium atrosepticum SCRI1043 2881712 YP_048684.1 CDS ECA0568 NC_004547.2 631392 632048 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62145 (EMBL:AF440523) (230 aa) fasta scores: E(): 1.5e-46, 53.42% id in 219 aa, and to Salmonella typhi possible exported protein sty4568 or t4265 SWALL:Q8Z1J7 (EMBL:AL627282) (217 aa) fasta scores: E(): 1.1e-66, 72.22% id in 216 aa, and to Pseudomonas putida hypothetical 29.5 kDa protein SWALL:Q8VMJ0 (EMBL:AJ344068) (267 aa) fasta scores: E(): 6.9e-46, 53.67% id in 218 aa; hypothetical protein 631392..632048 Pectobacterium atrosepticum SCRI1043 2881713 YP_048685.1 CDS ECA0569 NC_004547.2 632045 632971 D Similar to Pseudomonas putida hypothetical 31.9 kDa protein SWALL:Q8VMJ1 (EMBL:AJ344068) (302 aa) fasta scores: E(): 2.7e-39, 51.31% id in 267 aa, and to Salmonella typhi hypothetical protein sty4569 or t4266 SWALL:Q8Z1J6 (EMBL:AL627282) (299 aa) fasta scores: E(): 3.2e-55, 57.19% id in 292 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62144 (EMBL:AF440523) (303 aa) fasta scores: E(): 4e-41, 45.24% id in 305 aa; hypothetical protein 632045..632971 Pectobacterium atrosepticum SCRI1043 2881482 YP_048686.1 CDS ECA0570 NC_004547.2 632961 634493 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62143 (EMBL:AF440523) (472 aa) fasta scores: E(): 5.8e-46, 41.17% id in 493 aa, and to Salmonella typhi exported protein sty4570 SWALL:Q8Z1J5 (EMBL:AL627282) (492 aa) fasta scores: E(): 5e-67, 54.08% id in 514 aa, and to Pseudomonas putida hypothetical 51.2 kDa protein SWALL:Q8VMJ2 (EMBL:AJ344068) (482 aa) fasta scores: E(): 6.1e-31, 40.14% id in 426 aa; hypothetical protein 632961..634493 Pectobacterium atrosepticum SCRI1043 2881483 YP_048687.1 CDS ECA0571 NC_004547.2 634611 634946 D hypothetical protein 634611..634946 Pectobacterium atrosepticum SCRI1043 2881484 YP_048688.1 CDS ECA0572 NC_004547.2 634939 635349 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62280 (EMBL:AF440524) (139 aa) fasta scores: E(): 2e-22, 52.3% id in 130 aa, and to Salmonella typhi lipoprotein sty4571 or t4267 SWALL:Q8Z1J4 (EMBL:AL627282) (147 aa) fasta scores: E(): 2.2e-28, 61.48% id in 135 aa; lipoprotein 634939..635349 Pectobacterium atrosepticum SCRI1043 2882088 YP_048689.1 CDS ECA0573 NC_004547.2 635349 638210 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62141 (EMBL:AF440523) (943 aa) fasta scores: E(): 1e-139, 50.22% id in 882 aa, and to Salmonella typhi hypothetical protein sty4573 sty4573 or t4270 SWALL:Q8Z1J2 (EMBL:AL627282) (807 aa) fasta scores: E(): 3.1e-216, 67.64% id in 819 aa, and to Providencia rettgeri TraC SWALL:Q8RKZ1 (EMBL:AY090559) (799 aa) fasta scores: E(): 0.56, 20.93% id in 812 aa; plasmid-like protein 635349..638210 Pectobacterium atrosepticum SCRI1043 2882089 YP_048690.1 CDS ECA0574 NC_004547.2 638207 638653 D Similar to Salmonella typhi hypothetical protein Sty4574 SWALL:Q8Z1J1 (EMBL:AL627282) (128 aa) fasta scores: E(): 5.8e-11, 38.28% id in 128 aa; hypothetical protein 638207..638653 Pectobacterium atrosepticum SCRI1043 2882090 YP_048691.1 CDS ECA0575 NC_004547.2 638755 639189 R Similar to Saccharomyces cerevisiae hypothetical 15.9 kDa protein ydr100W SWALL:Q03860 (EMBL:Z47746) (143 aa) fasta scores: E(): 0.59, 33.91% id in 115 aa; hypothetical protein complement(638755..639189) Pectobacterium atrosepticum SCRI1043 2881931 YP_048692.1 CDS ECA0576 NC_004547.2 639329 639733 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62274 (EMBL:AF440524) (145 aa) fasta scores: E(): 9e-09, 39.65% id in 116 aa, and to Salmonella typhi hypothetical protein sty4575 sty4575 or t4272 SWALL:Q8Z1J0 (EMBL:AL627282) (130 aa) fasta scores: E(): 2.6e-19, 46.82% id in 126 aa; hypothetical protein 639329..639733 Pectobacterium atrosepticum SCRI1043 2881932 YP_048693.1 CDS ECA0577 NC_004547.2 639726 640700 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62273 (EMBL:AF440524) (311 aa) fasta scores: E(): 7.4e-40, 49.22% id in 323 aa, and to Salmonella typhi hypothetical protein sty4576 sty4576 or t4273 SWALL:Q8Z1I9 (EMBL:AL627282) (322 aa) fasta scores: E(): 3e-85, 66.77% id in 319 aa; hypothetical protein 639726..640700 Pectobacterium atrosepticum SCRI1043 2881933 YP_048694.1 CDS ECA0578 NC_004547.2 640710 642134 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62272 (EMBL:AF440524) (467 aa) fasta scores: E(): 7.4e-32, 38.82% id in 461 aa, and to Salmonella typhi hypothetical protein sty4577 sty4577 or t4274 SWALL:Q8Z1I8 (EMBL:AL627282) (476 aa) fasta scores: E(): 7.1e-96, 61.5% id in 439 aa; hypothetical protein 640710..642134 Pectobacterium atrosepticum SCRI1043 2882005 YP_048695.1 CDS ECA0579 NC_004547.2 642137 642508 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62271 (EMBL:AF440524) (109 aa) fasta scores: E(): 0.15, 28.18% id in 110 aa, and to Salmonella typhi membrane protein sty4578 or t4275 SWALL:Q8Z1I7 (EMBL:AL627282) (110 aa) fasta scores: E(): 3.9e-11, 38.94% id in 95 aa; hypothetical protein 642137..642508 Pectobacterium atrosepticum SCRI1043 2882006 YP_048696.1 CDS ECA0580 NC_004547.2 642505 644037 D Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62133 (EMBL:AF440523) (515 aa) fasta scores: E(): 9.4e-85, 42.08% id in 518 aa, and to Salmonella typhi membrane protein sty4579 or t4276 SWALL:Q8Z1I6 (EMBL:AL627282) (501 aa) fasta scores: E(): 7.8e-140, 63.54% id in 502 aa; hypothetical protein 642505..644037 Pectobacterium atrosepticum SCRI1043 2882007 YP_048697.1 CDS ECA0581 NC_004547.2 644070 644459 R Similar to Salmonella typhi membrane protein sty4580 SWALL:Q8Z1I5 (EMBL:AL627282) (129 aa) fasta scores: E(): 7.1e-07, 30.15% id in 126 aa.; hypothetical protein complement(644070..644459) Pectobacterium atrosepticum SCRI1043 2885075 YP_048698.1 CDS ECA0582 NC_004547.2 644602 644961 R Similar to Escherichia coli PemK protein pemK SWALL:PEMK_ECOLI (SWALL:P13976) (133 aa) fasta scores: E(): 3e-07, 33.33% id in 111 aa, and to Plasmid R100 plasmid stable inheritance protein pemK SWALL:BAA78898 (EMBL:AP000342) (133 aa) fasta scores: E(): 3e-07, 33.33% id in 111 aa; plasmid-like protein complement(644602..644961) Pectobacterium atrosepticum SCRI1043 2885076 YP_048699.1 CDS ECA0583 NC_004547.2 644958 645260 R Similar to Morganella morganii PemI pemI SWALL:O52204 (EMBL:AF027767) (97 aa) fasta scores: E(): 1.7, 27.55% id in 98 aa, and to Agrobacterium tumefaciens pemi protein pemi or atu0939 or agr_c_1711 SWALL:Q8UGU6 (EMBL:AE009059) (103 aa) fasta scores: E(): 0.1, 28.73% id in 87 aa; plasmid-like protein complement(644958..645260) Pectobacterium atrosepticum SCRI1043 2885077 YP_048700.1 CDS ECA0584 NC_004547.2 645558 647429 D Similar to Bacillus coagulans restriction enzyme bgci alpha subunit bcgiA SWALL:T4BA_BACCO (SWALL:Q07605) (637 aa) fasta scores: E(): 1.3e-46, 31.12% id in 633 aa, and to Staphylococcus aureus bacteriophage phi-42 hypothetical 72.6 kDa protein SWALL:P95687 (EMBL:X94423) (639 aa) fasta scores: E(): 1.9e-42, 30.78% id in 653 aa; restriction enzyme subunit subunit 645558..647429 Pectobacterium atrosepticum SCRI1043 2884857 YP_048701.1 CDS ECA0585 NC_004547.2 647419 648405 D Similar to Bacillus coagulans restriction enzyme bgci beta subunit BcgiB SWALL:T4BB_BACCO (SWALL:Q07606) (341 aa) fasta scores: E(): 3.2e-05, 24.05% id in 345 aa, and to Pseudomonas syringae conserved domain protein pspto0285 SWALL:Q88AU8 (EMBL:AE016856) (360 aa) fasta scores: E(): 0.035, 23.75% id in 320 aa; restriction enzyme subunit beta 647419..648405 Pectobacterium atrosepticum SCRI1043 2884858 YP_048702.1 CDS ECA0586 NC_004547.2 648538 648678 D No significant database matches.; hypothetical protein 648538..648678 Pectobacterium atrosepticum SCRI1043 2884859 YP_048703.1 CDS ECA0586A NC_004547.2 648731 648898 D Similar to the C-terminal region of Methanobacterium thermoautotrophicum conserved protein mth1804 SWALL:O27832 (EMBL:AE000934) (143 aa) fasta scores: E(): 2.1, 40% id in 50 aa; hypothetical protein 648731..648898 Pectobacterium atrosepticum SCRI1043 2884649 YP_048704.1 CDS ECA0587 NC_004547.2 649514 650404 D Similar to Yersinia pestis DNA-binding prophage protein ypo1092 SWALL:Q8ZH21 (EMBL:AJ414146) (298 aa) fasta scores: E(): 4.4e-48, 48.79% id in 291 aa, and to Salmonella typhi hypothetical protein sty4586 SWALL:Q8Z1I0 (EMBL:AL627282) (306 aa) fasta scores: E(): 3e-46, 46.57% id in 292 aa, and to Salmonella typhimurium integrase stm2760 SWALL:Q8ZMP4 (EMBL:AE008825) (291 aa) fasta scores: E(): 9.7e-46, 46.07% id in 293 aa.; hypothetical protein 649514..650404 Pectobacterium atrosepticum SCRI1043 2884650 YP_048705.1 CDS ECA0588 NC_004547.2 650412 650702 R Similar to Citrobacter freundii hypothetical protein orf3 SWALL:AAN87633 (EMBL:AF550415) (106 aa) fasta scores: E(): 3.3e-09, 38.46% id in 91 aa, and to Proteus vulgaris hypothetical protein orf45 SWALL:Q8KK91 (EMBL:AP004237) (99 aa) fasta scores: E(): 3.5e-05, 34.48% id in 87 aa, and to Salmonella typhimurium YdeA protein ydeA SWALL:Q8L240 (EMBL:AP005147) (196 aa) fasta scores: E(): 0.0055, 32.55% id in 86 aa; plasmid-like protein complement(650412..650702) Pectobacterium atrosepticum SCRI1043 2884651 YP_048706.1 CDS ECA0589 NC_004547.2 651097 651408 D No significant database matches.; hypothetical protein 651097..651408 Pectobacterium atrosepticum SCRI1043 2885750 YP_048707.1 CDS ECA0590 NC_004547.2 651458 651814 D No significant database matches.; hypothetical protein 651458..651814 Pectobacterium atrosepticum SCRI1043 2885751 YP_048708.1 CDS ECA0591 NC_004547.2 651896 652369 D No significant database matches.; hypothetical protein 651896..652369 Pectobacterium atrosepticum SCRI1043 2885752 YP_048709.1 CDS ECA0592 NC_004547.2 652458 652862 D No significant database matches.; hypothetical protein 652458..652862 Pectobacterium atrosepticum SCRI1043 2885753 YP_048710.1 CDS ECA0593 NC_004547.2 653073 653486 D Similar to Vibrio cholerae DNA repair protein RadC homolog SWALL:RADC_VIBCH (SWALL:Q9KVC9) (224 aa) fasta scores: E(): 2.2e-28, 55.47% id in 137 aa, and to Escherichia coli DNA repair protein RadC SWALL:RADC_ECOLI (SWALL:P25531) (222 aa) fasta scores: E(): 2.4e-26, 50.38% id in 129 aa.; DNA repair protein 653073..653486 Pectobacterium atrosepticum SCRI1043 2885754 YP_048711.1 CDS ECA0594 NC_004547.2 653663 654259 D Similar to Salmonella typhi hypothetical protein sty4589 SWALL:Q8Z1H7 (EMBL:AL627282) (194 aa) fasta scores: E(): 1.3e-17, 35.02% id in 197 aa. No other significant database matches.; hypothetical protein 653663..654259 Pectobacterium atrosepticum SCRI1043 2885755 YP_048712.1 CDS ECA0595 NC_004547.2 654256 654528 D Similar to Salmonella typhi hypothetical protein sty4590 SWALL:Q8Z1H6 (EMBL:AL627282) (98 aa) fasta scores: E(): 1.4e-11, 46.31% id in 95 aa. No other significant database matches.; hypothetical protein 654256..654528 Pectobacterium atrosepticum SCRI1043 2885706 YP_048713.1 CDS ECA0596 NC_004547.2 654599 655084 D Similar to Salmonella typhi hypothetical protein sty4591 SWALL:Q8Z1H5 (EMBL:AL627282) (152 aa) fasta scores: E(): 2.2e-30, 55.84% id in 154 aa. No other significant database matches.; hypothetical protein 654599..655084 Pectobacterium atrosepticum SCRI1043 2885707 YP_048714.1 CDS ECA0597 NC_004547.2 655150 657111 D Similar to Salmonella typhi hypothetical protein sty4592 SWALL:Q8Z1H4 (EMBL:AL627282) (649 aa) fasta scores: E(): 1.3e-115, 48.69% id in 651 aa.; hypothetical protein 655150..657111 Pectobacterium atrosepticum SCRI1043 2885708 YP_048715.1 CDS ECA0598 NC_004547.2 657186 658079 D Similar to Salmonella typhi hypothetical protein sty4593 SWALL:Q8Z1H3 (EMBL:AL627282) (302 aa) fasta scores: E(): 7.9e-40, 41.33% id in 300 aa; hypothetical protein 657186..658079 Pectobacterium atrosepticum SCRI1043 2884073 YP_048716.1 CDS ECA0599 NC_004547.2 658154 659074 D Similar to Salmonella typhi hypothetical protein Sty4594 SWALL:Q8Z1H2 (EMBL:AL627282) (299 aa) fasta scores: E(): 8.5e-43, 41.31% id in 288 aa.; hypothetical protein 658154..659074 Pectobacterium atrosepticum SCRI1043 2884074 YP_048717.1 CDS cfa8B NC_004547.2 659713 661026 R Similar to the C-terminal region of Pseudomonas syringae oxidoreductase Cfa8 SWALL:O69071 (EMBL:AF061506) (565 aa) fasta scores: E(): 6.5e-122, 74.05% id in 397 aa, and to Streptomyces lavendulae hypothetical 45.2 kDa protein SWALL:Q9X5P6 (EMBL:AF127374) (414 aa) fasta scores: E(): 2.2e-82, 52.39% id in 397 aa; oxidoreductase complement(659713..661026) Pectobacterium atrosepticum SCRI1043 2884879 YP_048718.1 CDS cfa8A NC_004547.2 661110 661541 R Similar to the N-terminal region of Pseudomonas syringae oxidoreductase Cfa8 SWALL:O69071 (EMBL:AF061506) (565 aa) fasta scores: E(): 8.2e-20, 45.11% id in 133 aa; oxidoreductase complement(661110..661541) Pectobacterium atrosepticum SCRI1043 2884878 YP_048719.1 CDS cfa7 NC_004547.2 661605 667991 R Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa; type I polyketide synthase complement(661605..667991) Pectobacterium atrosepticum SCRI1043 2885098 YP_048720.1 CDS cfa6 NC_004547.2 667988 676129 R Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa; type I polyketide synthase complement(667988..676129) Pectobacterium atrosepticum SCRI1043 2885097 YP_048721.1 CDS cfa5 NC_004547.2 676143 677582 R Similar to Pseudomonas syringae coronafacic acid synthetase, ligase component cfa5 or pspto4685 SWALL:Q87W71 (EMBL:AE016872) (472 aa) fasta scores: E(): 4.8e-77, 48.72% id in 472 aa; coronafacic acid synthetase, ligase component complement(676143..677582) Pectobacterium atrosepticum SCRI1043 2885096 YP_048722.1 CDS cfa4 NC_004547.2 677579 678112 R Similar to Pseudomonas syringae coronafacic acid synthetase component cfa4 or pspto4684 SWALL:Q87W72 (EMBL:AE016872) (177 aa) fasta scores: E(): 4e-25, 46.38% id in 166 aa; coronafacic acid synthetase component complement(677579..678112) Pectobacterium atrosepticum SCRI1043 2885685 YP_048723.1 CDS cfa3 NC_004547.2 678109 679254 R Similar to Pseudomonas syringae cfa-beta-ketoacylsynthase Cfa3 SWALL:P72239 (EMBL:U56980) (379 aa) fasta scores: E(): 2.7e-75, 56.15% id in 374 aa, and to Streptomyces coelicolor 3-oxoacyl-(acyl-carrier-protein) synthase Sco0548 or scf11.28C SWALL:Q9RK62 (EMBL:AL939105) (428 aa) fasta scores: E(): 3.6e-25, 34.45% id in 415 aa; Cfa-beta-ketoacylsynthase complement(678109..679254) Pectobacterium atrosepticum SCRI1043 2885684 YP_048724.1 CDS cfa2 NC_004547.2 679248 679745 R Similar to Pseudomonas syringae coronafacic acid dehydratase Cfa2 SWALL:CFA2_PSESG (SWALL:P72238) (165 aa) fasta scores: E(): 3.3e-49, 76.97% id in 165 aa; coronafacic acid dehydratase complement(679248..679745) Pectobacterium atrosepticum SCRI1043 2885683 YP_048725.1 CDS cfa1 NC_004547.2 679742 680017 R Similar to Pseudomonas syringae cfa-acyl carrier protein Cfa1 SWALL:P72237 (EMBL:U56980) (83 aa) fasta scores: E(): 6.8e-17, 60% id in 80 aa; Cfa-acyl carrier protein complement(679742..680017) Pectobacterium atrosepticum SCRI1043 2881443 YP_048726.1 CDS cfl NC_004547.2 680119 681681 R Similar to Pseudomonas syringae coronafacate ligase Cfl SWALL:Q52375 (EMBL:U09027) (509 aa) fasta scores: E(): 1.4e-71, 37.3% id in 512 aa; coronafacate ligase complement(680119..681681) Pectobacterium atrosepticum SCRI1043 2884880 YP_048727.1 CDS ECA0610 NC_004547.2 681941 682903 D Similar to Pseudomonas putida transcriptional regulator, LysR family pp5261 SWALL:AAN70826 (EMBL:AE016793) (308 aa) fasta scores: E(): 3.6e-24, 32.4% id in 287 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator GcvA SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 2.4e-16, 31.13% id in 273 aa.; LysR family transcriptional regulator 681941..682903 Pectobacterium atrosepticum SCRI1043 2884075 YP_048728.1 CDS ECA0611 NC_004547.2 683332 684792 D Similar to Salmonella typhi DNA helicase sty4664 SWALL:Q8Z1C6 (EMBL:AL627283) (503 aa) fasta scores: E(): 1.4e-115, 59.24% id in 476 aa and to Proteus vulgaris helicase orf193 SWALL:Q8L286 (EMBL:AP004237) (491 aa) fasta scores: E(): 2.6e-64, 39.24% id in 474 aa.; hypothetical protein 683332..684792 Pectobacterium atrosepticum SCRI1043 2884027 YP_048729.1 CDS ECA0612 NC_004547.2 684912 685403 D Similar to Pseudomonas aeruginosa hypothetical protein pa2496 SWALL:Q9I0Y6 (EMBL:AE004677) (171 aa) fasta scores: E(): 5.5e-16, 33.12% id in 157 aa.Note that there are no significant database matches to enterobacterial species.; hypothetical protein 684912..685403 Pectobacterium atrosepticum SCRI1043 2884028 YP_048730.1 CDS ECA0613 NC_004547.2 685696 687294 D Similar to Salmonella typhi hypothetical protein sty4665 SWALL:Q8Z1C5 (EMBL:AL627283) (529 aa) fasta scores: E(): 3.7e-24, 32.5% id in 523 aa, and to Pseudomonas syringae hypothetical 70.0 kDa protein SWALL:Q8RL93 (EMBL:AY083467) (638 aa) fasta scores: E(): 1.4e-12, 25.24% id in 622 aa; hypothetical protein 685696..687294 Pectobacterium atrosepticum SCRI1043 2884029 YP_048731.1 CDS ECA0614 NC_004547.2 687380 688402 D Similar to Pseudomonas aeruginosa XerC SWALL:Q9F771 (EMBL:AF285416) (427 aa) fasta scores: E(): 7.2e-36, 36.52% id in 334 aa, and to Salmonella typhi probable phage integrase sty4666 or t4357 SWALL:Q8Z1C4 (EMBL:AL627283) (337 aa) fasta scores: E(): 2.2e-62, 48.37% id in 339 aa; phage integrase 687380..688402 Pectobacterium atrosepticum SCRI1043 2883780 YP_048732.1 CDS ECA0615 NC_004547.2 688832 689677 D Similar to Pseudomonas putida transcriptional regulator, AraC family pp2430 SWALL:AAN68042 (EMBL:AE016783) (276 aa) fasta scores: E(): 1.1e-67, 56.72% id in 275 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 2.1e-63, 53.65% id in 274 aa; AraC family transcriptional regulator 688832..689677 Pectobacterium atrosepticum SCRI1043 2883781 YP_048733.1 CDS ECA0616 NC_004547.2 689713 690303 D Similar to Pseudomonas aeruginosa hypothetical protein 6 pa2916 SWALL:Q9HZT1 (EMBL:AE004718) (197 aa) fasta scores: E(): 1.2e-35, 47.93% id in 194 aa, and to Pseudomonas putida membrane protein, pp2429 SWALL:AAN68041 (EMBL:AE016783) (194 aa) fasta scores: E(): 1.9e-31, 44.61% id in 195 aa; hypothetical protein 689713..690303 Pectobacterium atrosepticum SCRI1043 2883782 YP_048734.1 CDS ECA0617 NC_004547.2 690300 690875 R Similar to Yersinia pestis TetR-family regulatory protein ypo0341 SWALL:Q8ZIZ3 (EMBL:AJ414142) (191 aa) fasta scores: E(): 4.5e-49, 68.58% id in 191 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein YjdC SWALL:AAN45707 (EMBL:Z36905) (191 aa) fasta scores: E(): 1.3e-48, 64.92% id in 191 aa; transcriptional regulator complement(690300..690875) Pectobacterium atrosepticum SCRI1043 2883621 YP_048735.1 CDS dipZ NC_004547.2 690918 692651 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(690918..692651) Pectobacterium atrosepticum SCRI1043 2882295 YP_048736.1 CDS cutA NC_004547.2 692627 692962 R copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA complement(692627..692962) Pectobacterium atrosepticum SCRI1043 2883448 YP_048737.1 CDS dcuA NC_004547.2 693111 694412 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(693111..694412) Pectobacterium atrosepticum SCRI1043 2884887 YP_048738.1 CDS aspA NC_004547.2 694534 695973 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(694534..695973) Pectobacterium atrosepticum SCRI1043 2885553 YP_048739.1 CDS fxsA NC_004547.2 696469 696939 D Similar to Escherichia coli FxsA protein FxsA or b4140 SWALL:FXSA_ECOLI (SWALL:P37147) (158 aa) fasta scores: E(): 1.3e-38, 68.35% id in 158 aa; suppressor of F plamsid exlusion of phage T7 696469..696939 Pectobacterium atrosepticum SCRI1043 2883272 YP_048740.1 CDS groES NC_004547.2 697176 697469 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 697176..697469 Pectobacterium atrosepticum SCRI1043 2885719 YP_048741.1 CDS groEL NC_004547.2 697515 699164 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 697515..699164 Pectobacterium atrosepticum SCRI1043 2885718 YP_048742.1 CDS ubiC NC_004547.2 699428 699961 D catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 699428..699961 Pectobacterium atrosepticum SCRI1043 2884218 YP_048743.1 CDS ubiA NC_004547.2 699974 700837 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 699974..700837 Pectobacterium atrosepticum SCRI1043 2884216 YP_048744.1 CDS plsB NC_004547.2 700978 703455 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(700978..703455) Pectobacterium atrosepticum SCRI1043 2883490 YP_048745.1 CDS dgkA NC_004547.2 703585 703950 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri diacylglycerol kinase DgkA or b4042 or c5013 or z5641 or ecs5025 or sf4163 SWALL:KDGL_ECOLI (SWALL:P00556) (121 aa) fasta scores: E(): 7.4e-27, 61.34% id in 119 aa; diacylglycerol kinase 703585..703950 Pectobacterium atrosepticum SCRI1043 2883562 YP_048746.1 CDS lexA NC_004547.2 704061 704669 D Represses a number of genes involved in the response to DNA damage; LexA repressor 704061..704669 Pectobacterium atrosepticum SCRI1043 2883334 YP_048747.1 CDS ECA0631 NC_004547.2 705108 705329 D unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 705108..705329 Pectobacterium atrosepticum SCRI1043 2883622 YP_048748.1 CDS zur NC_004547.2 705376 705891 R Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor complement(705376..705891) Pectobacterium atrosepticum SCRI1043 2882466 YP_048749.1 CDS ECA0633 NC_004547.2 705992 706690 R Similar to Salmonella typhi hypothetical protein sty3416 SWALL:Q8Z3K9 (EMBL:AL627278) (233 aa) fasta scores: E(): 1.4e-65, 68.67% id in 233 aa, and to Escherichia coli hypothetical protein YhaK SWALL:YHAK_ECOLI (SWALL:P42624) (233 aa) fasta scores: E(): 2.8e-63, 67.38% id in 233 aa; hypothetical protein complement(705992..706690) Pectobacterium atrosepticum SCRI1043 2883623 YP_048750.1 CDS ECA0634 NC_004547.2 706802 707698 D Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo3545 SWALL:AAM83707 (EMBL:AJ414157) (297 aa) fasta scores: E(): 1.3e-97, 87.2% id in 297 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical transcriptional regulator YhaJ SWALL:YHAJ_ECOLI (SWALL:P42623) (298 aa) fasta scores: E(): 5.3e-97, 86.82% id in 296 aa; LysR family transcriptional regulator 706802..707698 Pectobacterium atrosepticum SCRI1043 2883464 YP_048751.1 CDS ECA0635 NC_004547.2 707778 708773 R Similar to Salmonella typhi hypothetical protein Ssty3413 SWALL:Q8Z3L1 (EMBL:AL627278) (328 aa) fasta scores: E(): 3.6e-101, 75.53% id in 327 aa, and to Escherichia coli O157:H7 transferase YqjG SWALL:Q8XAH0 (EMBL:AE005539) (328 aa) fasta scores: E(): 1.9e-99, 74.61% id in 327 aa; hypothetical protein complement(707778..708773) Pectobacterium atrosepticum SCRI1043 2883465 YP_048752.1 CDS ECA0636 NC_004547.2 708894 709289 R Similar to Yersinia pestis hypothetical protein y3612 SWALL:AAM87160 (EMBL:AE013963) (136 aa) fasta scores: E(): 3.7e-38, 76.33% id in 131 aa, and to Salmonella typhimurium membrane-associated protein YqjF SWALL:Q8ZLW9 (EMBL:AE008848) (161 aa) fasta scores: E(): 2.3e-37, 77.86% id in 131 aa; hypothetical protein complement(708894..709289) Pectobacterium atrosepticum SCRI1043 2883466 YP_048753.1 CDS ECA0637 NC_004547.2 709563 709853 R Similar to Escherichia coli hypothetical protein YqjK SWALL:YQJK_ECOLI (SWALL:Q47710) (99 aa) fasta scores: E(): 1.5e-17, 47.36% id in 95 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein YqjK SWALL:Q8XGR1 (EMBL:AE008848) (99 aa) fasta scores: E(): 4.6e-17, 45.26% id in 95 aa.; hypothetical protein complement(709563..709853) Pectobacterium atrosepticum SCRI1043 2885591 YP_048754.1 CDS ECA0638 NC_004547.2 709850 710245 R Similar to Salmonella typhimurium, and Salmonella typhi inner membrane protein stm3230 or sty3410 SWALL:Q8XFR8 (EMBL:AE008848) (132 aa) fasta scores: E(): 8.1e-30, 67.69% id in 130 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YqjE SWALL:YQJE_ECOLI (SWALL:P42618) (134 aa) fasta scores: E(): 1.3e-28, 64.39% id in 132 aa; hypothetical protein complement(709850..710245) Pectobacterium atrosepticum SCRI1043 2885592 YP_048755.1 CDS ECA0639 NC_004547.2 710259 710564 R Similar to Yersinia pestis membrane protein ypo0570 SWALL:AAM87157 (EMBL:AJ414143) (101 aa) fasta scores: E(): 2.3e-22, 76.23% id in 101 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein stm3229 or sty3409 SWALL:Q8XEQ1 (EMBL:AE008848) (101 aa) fasta scores: E(): 9.6e-21, 71.28% id in 101 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YqjD SWALL:YQJD_ECOLI (SWALL:P42617) (101 aa) fasta scores: E(): 2.2e-20, 69.3% id in 101 aa; hypothetical protein complement(710259..710564) Pectobacterium atrosepticum SCRI1043 2885593 YP_048756.1 CDS ECA0640 NC_004547.2 710756 711145 R Similar to Salmonella typhimurium, and Salmonella typhi periplasmic protein stm3228 or sty3408 SWALL:Q8XF23 (EMBL:AE008848) (122 aa) fasta scores: E(): 1.4e-12, 49.15% id in 118 aa, and to Escherichia coli protein YqjC SWALL:YQJC_ECOLI (SWALL:P42616) (122 aa) fasta scores: E(): 1.6e-12, 50.83% id in 120 aa.; hypothetical protein complement(710756..711145) Pectobacterium atrosepticum SCRI1043 2882319 YP_048757.1 CDS ECA0641 NC_004547.2 711151 711546 R Similar to Salmonella typhimurium, and Salmonella typhi outer membrane protein YqjB or stm3227 or sty3407 SWALL:Q8XF92 (EMBL:AE008848) (127 aa) fasta scores: E(): 8.8e-09, 36.43% id in 129 aa, and to Yersinia pestis membrane protein ypo0573 SWALL:Q8ZID2 (EMBL:AJ414143) (129 aa) fasta scores: E(): 1.6e-08, 46.31% id in 95 aa; hypothetical protein complement(711151..711546) Pectobacterium atrosepticum SCRI1043 2882320 YP_048758.1 CDS ECA0642 NC_004547.2 711549 712232 R Similar to Yersinia pestis DedA-family membrane protein ypo0574 SWALL:Q8ZID1 (EMBL:AJ414143) (232 aa) fasta scores: E(): 1.2e-71, 77.29% id in 229 aa, and to Salmonella typhimurium DedA family, membrane protein stm3226 SWALL:Q8ZLX0 (EMBL:AE008848) (220 aa) fasta scores: E(): 2.8e-67, 76.27% id in 215 aa.; DedA family membrane protein complement(711549..712232) Pectobacterium atrosepticum SCRI1043 2882321 YP_048759.1 CDS exuR NC_004547.2 712685 713461 R regulates the exuT, uxaCA and uxuRAB operons which encode genes involved in hexuronate utilization.; DNA-binding transcriptional repressor ExuR complement(712685..713461) Pectobacterium atrosepticum SCRI1043 2884024 YP_048760.1 CDS exuT NC_004547.2 713669 714970 R Similar to Erwinia chrysanthemi ExuT SWALL:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 6.4e-122, 88.78% id in 330 aa, and to Ralstonia solanacearum ExuT SWALL:Q93AS8 (EMBL:AF417111) (439 aa) fasta scores: E(): 2.8e-99, 56.39% id in 422 aa; galacturonate transporter complement(713669..714970) Pectobacterium atrosepticum SCRI1043 2884025 YP_048761.1 CDS uxaC NC_004547.2 715386 716795 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 715386..716795 Pectobacterium atrosepticum SCRI1043 2882865 YP_048762.1 CDS uxaB1 NC_004547.2 717006 718472 D catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase 717006..718472 Pectobacterium atrosepticum SCRI1043 2882732 YP_048763.1 CDS uxaA NC_004547.2 718492 719982 D Similar to Escherichia coli altronate hydrolase UxaA SWALL:UXAA_ECOLI (SWALL:P42604) (495 aa) fasta scores: E(): 4.1e-163, 80.24% id in 496 aa; altronate hydrolase 718492..719982 Pectobacterium atrosepticum SCRI1043 2882731 YP_048764.1 CDS ECA0648 NC_004547.2 720072 720602 D Similar to Yersinia pestis membrane protein ypo0582 or y3597 SWALL:AAM87145 (EMBL:AJ414143) (176 aa) fasta scores: E(): 3.4e-49, 73.86% id in 176 aa, and to Escherichia coli hypothetical protein ygjv ygjv or b3090 SWALL:YGJV_ECOLI (SWALL:P42603) (183 aa) fasta scores: E(): 1.2e-47, 67.81% id in 174 aa; hypothetical protein 720072..720602 Pectobacterium atrosepticum SCRI1043 2882371 YP_048765.1 CDS ECA0649 NC_004547.2 720949 722940 D Weakly similar to Schizosaccharomyces pombe DNA mismatch repair protein, mlh1 homolog spbc1703.04 SWALL:Q9P7W6 (EMBL:AL136536) (684 aa) fasta scores: E(): 0.11, 21.48% id in 498 aa, and to Neisseria meningitidis hypothetical protein Nma0428 nma0428 SWALL:Q9JWD7 (EMBL:AL162753) (548 aa) fasta scores: E(): 0.18, 22.37% id in 523 aa; DNA mismatch repair protein 720949..722940 Pectobacterium atrosepticum SCRI1043 2882372 YP_048766.1 CDS ECA0650 NC_004547.2 722963 723394 D Similar to Vibrio cholerae hypothetical protein vca0440 SWALL:Q9KMC4 (EMBL:AE004377) (148 aa) fasta scores: E(): 2.6e-05, 28.67% id in 143 aa, and to Salmonella typhi membrane protein sty4669 SWALL:Q8Z1C1 (EMBL:AL627283) (150 aa) fasta scores: E(): 4.2e-05, 30.3% id in 132 aa.; hypothetical protein 722963..723394 Pectobacterium atrosepticum SCRI1043 2882373 YP_048767.1 CDS ECA0651 NC_004547.2 724024 725271 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(724024..725271) Pectobacterium atrosepticum SCRI1043 2885456 YP_048768.1 CDS ECA0652 NC_004547.2 725589 726542 R Similar to Salmonella typhimurium resistance protein stm3224 SWALL:Q8ZLX2 (EMBL:AE008848) (322 aa) fasta scores: E(): 7e-101, 76.65% id in 317 aa, and to Escherichia coli hypothetical protein YgjT SWALL:YGJT_ECOLI (SWALL:P42601) (321 aa) fasta scores: E(): 3.3e-95, 73.12% id in 320 aa; hypothetical protein complement(725589..726542) Pectobacterium atrosepticum SCRI1043 2885457 YP_048769.1 CDS ECA0653 NC_004547.2 726815 727813 R Similar to Escherichia coli O6 hypothetical oxidoreductase YgjR SWALL:AAN82290 (EMBL:AE016767) (334 aa) fasta scores: E(): 2.7e-91, 70.76% id in 325 aa.; oxidoreductase complement(726815..727813) Pectobacterium atrosepticum SCRI1043 2885458 YP_048770.1 CDS ECA0654 NC_004547.2 727975 729114 D Similar to Escherichia coli ribosomal RNA small subunit methyltransferase D YgjO or SWALL:RSMD_ECOLI (SWALL:P42596) (378 aa) fasta scores: E(): 8.5e-93, 61.47% id in 379 aa, and to Yersinia pestis methyltransferase ypo0588 SWALL:Q8ZIB9 (EMBL:AJ414143) (395 aa) fasta scores: E(): 1.5e-98, 64.64% id in 379 aa; hypothetical protein 727975..729114 Pectobacterium atrosepticum SCRI1043 2881605 YP_048771.1 CDS fadF NC_004547.2 729131 731182 R Similar to Escherichia coli 2,4-dienoyl-CoA reductase [NADPH] FadH or b3081 SWALL:FADH_ECOLI (SWALL:P42593) (671 aa) fasta scores: E(): 1e-145, 69.35% id in 682 aa, and to Pseudomonas putida 2,4-dienoyl-coA reductase FadH SWALL:AAN67622 (EMBL:AE016781) (693 aa) fasta scores: E(): 8.6e-160, 64.12% id in 683 aa.; 2,4-dienoyl-CoA reductase complement(729131..731182) Pectobacterium atrosepticum SCRI1043 2883500 YP_048772.1 CDS ECA0656 NC_004547.2 731397 731693 D Similar to Yersinia pestis hypothetical y1229 SWALL:AAM84804 (EMBL:AE013726) (134 aa) fasta scores: E(): 6.4e-07, 36.55% id in 93 aa; hypothetical protein 731397..731693 Pectobacterium atrosepticum SCRI1043 2881606 YP_048773.1 CDS ECA0658 NC_004547.2 731959 732447 D periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; periplasmic protein 731959..732447 Pectobacterium atrosepticum SCRI1043 2881607 YP_048774.1 CDS ECA0659 NC_004547.2 732646 734115 D Similar to Pseudomonas putida GGDEF domain protein pp3932 SWALL:AAN69526 (EMBL:AE016788) (402 aa) fasta scores: E(): 3e-26, 29.21% id in 397 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YddV SWALL:YDDV_ECOLI (SWALL:P77793) (460 aa) fasta scores: E(): 6.6e-17, 33.83% id in 198 aa.; signaling membrane protein 732646..734115 Pectobacterium atrosepticum SCRI1043 2881235 YP_048775.1 CDS ECA0660 NC_004547.2 734184 734549 D Similar to Rhizobium loti hypothetical protein mlr5326 SWALL:Q98C23 (EMBL:AP003006) (130 aa) fasta scores: E(): 2.2e-14, 50.82% id in 122 aa, and to Anabaena sp. hypothetical protein All7633 all7633 SWALL:Q8ZS79 (EMBL:AP003602) (242 aa) fasta scores: E(): 3.2e-06, 41% id in 100 aa.; hypothetical protein 734184..734549 Pectobacterium atrosepticum SCRI1043 2881236 YP_048776.1 CDS ECA0661 NC_004547.2 734875 736791 D Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 2.4e-60, 42.76% id in 622 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 6.6e-60, 42.09% id in 639 aa; PTS system beta-glucoside-specific transporter subunit IIABC 734875..736791 Pectobacterium atrosepticum SCRI1043 2881237 YP_048777.1 CDS ECA0662 NC_004547.2 736847 738250 R Similar to Erwinia chrysanthemi 6-phospho-beta-glucosidase ArbB SWALL:ARBB_ERWCH (SWALL:P26206) (465 aa) fasta scores: E(): 3.8e-144, 71.67% id in 459 aa, and to Escherichia coli 6-phospho-beta-glucosidase BglB or b3721 SWALL:BGLB_ECOLI (SWALL:P11988) (470 aa) fasta scores: E(): 4.5e-139, 67.74% id in 462 aa; 6-phospho-beta-glucosidase complement(736847..738250) Pectobacterium atrosepticum SCRI1043 2881615 YP_048778.1 CDS ECA0663 NC_004547.2 738351 738506 D Similar to an internal region of Fusarium oxysporum f. sp. radicis-lycopersici exopolygalacturonase pg1 SWALL:Q9UUT3 (EMBL:AF136444) (464 aa) fasta scores: E(): 3.2, 33.87% id in 62 aa; hypothetical protein 738351..738506 Pectobacterium atrosepticum SCRI1043 2881616 YP_048779.1 CDS ECA0664 NC_004547.2 738654 738935 D Similar to the N-terminal region of Aeromonas hydrophila LysR-type transcriptional regulator BdhR SWALL:Q93N31 (EMBL:AF388671) (320 aa) fasta scores: E(): 0.063, 30.1% id in 93 aa; hypothetical protein 738654..738935 Pectobacterium atrosepticum SCRI1043 2881617 YP_048780.1 CDS ECA0665 NC_004547.2 739283 740689 D Similar to Xylella fastidiosa phage-related integrase xf0631 SWALL:Q9PFM6 (EMBL:AE003908) (413 aa) fasta scores: E(): 2.4e-13, 31.42% id in 420 aa, and to Escherichia coli InT protein SWALL:Q93K89 (EMBL:X16664) (386 aa) fasta scores: E(): 1.1e-05, 26.36% id in 239 aa, and to Bacteriophage D3 integrase orf35 SWALL:Q9T1P3 (EMBL:AF165214) (369 aa) fasta scores: E(): 0.0047, 28.4% id in 176 aa.; phage integrase 739283..740689 Pectobacterium atrosepticum SCRI1043 2882600 YP_048781.1 CDS ECA0666 NC_004547.2 740667 741473 D No significant database matches.; hypothetical protein 740667..741473 Pectobacterium atrosepticum SCRI1043 2882601 YP_048782.1 CDS ECA0667 NC_004547.2 741625 741816 D Similar to Oceanobacillus iheyensis hypothetical conserved protein ob3324 SWALL:BAC15280 (EMBL:AP004604) (64 aa) fasta scores: E(): 8.4, 32.2% id in 59 aa, and to Vibrio vulnificus hypothetical protein vv12463 SWALL:AAO10827 (EMBL:AE016805) (78 aa) fasta scores: E(): 9.9, 33.89% id in 59 aa; hypothetical protein 741625..741816 Pectobacterium atrosepticum SCRI1043 2882602 YP_048783.1 CDS ECA0668 NC_004547.2 741882 742790 D No significant database matches.; hypothetical protein 741882..742790 Pectobacterium atrosepticum SCRI1043 2881230 YP_048784.1 CDS ECA0669 NC_004547.2 742780 743127 D Weakly similar to Pseudomonas aeruginosa hypothetical protein Pa0014 SWALL:Q9I7B2 (EMBL:AE004441) (90 aa) fasta scores: E(): 4, 28.78% id in 66 aa; hypothetical protein 742780..743127 Pectobacterium atrosepticum SCRI1043 2881231 YP_048785.1 CDS ECA0670 NC_004547.2 743120 743425 D No significant database matches.; hypothetical protein 743120..743425 Pectobacterium atrosepticum SCRI1043 2881232 YP_048786.1 CDS ECA0671 NC_004547.2 743498 743797 D Similar to bacteriophage P4 derepression protein epsiloN SWALL:VEPS_BPP4 (SWALL:P05463) (95 aa) fasta scores: E(): 3.4e-08, 43.15% id in 95 aa.; bacteriophage derepression protein 743498..743797 Pectobacterium atrosepticum SCRI1043 2881221 YP_048787.1 CDS ECA0672 NC_004547.2 743861 746539 D Similar to Bacteriophage phi CTX orf37 SWALL:Q9ZXI8 (EMBL:AB008550) (895 aa) fasta scores: E(): 3.8e-96, 42.27% id in 906 aa, and to Ralstonia solanacearum hypothetical phage-related protein rsc1898 or rs03464 SWALL:Q8XY65 (EMBL:AL646067) (902 aa) fasta scores: E(): 4.5e-170, 49.1% id in 894 aa; phage-like protein 743861..746539 Pectobacterium atrosepticum SCRI1043 2881222 YP_048788.1 CDS ECA0673 NC_004547.2 747115 747489 R Similar to Yersinia pestis DNA binding protein ypo0883 SWALL:Q8ZHK8 (EMBL:AJ414145) (120 aa) fasta scores: E(): 3.5e-14, 39.51% id in 124 aa, and to Bacteriophage phiE125 gp68 68 SWALL:Q8W6N2 (EMBL:AF447491) (128 aa) fasta scores: E(): 0.053, 28.84% id in 104 aa; phage-related DNA binding protein complement(747115..747489) Pectobacterium atrosepticum SCRI1043 2881223 YP_048789.1 CDS ECA0674 NC_004547.2 747553 747822 R Similar to Bacteriophage phiE125 gp69 69 SWALL:Q8W6N1 (EMBL:AF447491) (85 aa) fasta scores: E(): 0.0057, 36.84% id in 76 aa, and to Yersinia pestis hypothetical protein Ypo0884 SWALL:Q8ZHK7 (EMBL:AJ414145) (86 aa) fasta scores: E(): 1.9e-10, 48.31% id in 89 aa; phage-like protein complement(747553..747822) Pectobacterium atrosepticum SCRI1043 2882181 YP_048790.1 CDS ECA0675 NC_004547.2 748135 748305 D No significant database matches.; hypothetical protein 748135..748305 Pectobacterium atrosepticum SCRI1043 2882182 YP_048791.1 CDS ECA0676 NC_004547.2 748887 749699 D No significant database matches.; hypothetical protein 748887..749699 Pectobacterium atrosepticum SCRI1043 2882183 YP_048792.1 CDS ECA0677 NC_004547.2 749784 749990 R Similar to Bacteriophage 186 late control gene B protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 2.1, 48% id in 25 aa, and to Salmonella typhi bacteriophage gene regulatory protein sty4826 or t4523 SWALL:Q8Z107 (EMBL:AL627283) (79 aa) fasta scores: E(): 2.3, 52% id in 25 aa; phage regulatory protein complement(749784..749990) Pectobacterium atrosepticum SCRI1043 2881469 YP_048793.1 CDS ECA0678 NC_004547.2 750022 750273 R Similar to Bacteriophage phi CTX orf34 SWALL:Q9ZXJ1 (EMBL:AB008550) (97 aa) fasta scores: E(): 0.11, 36.61% id in 71 aa, and to Escherichia coli O157:H7 activator encoded in prophage cp-933i z0332 or ecs0296 SWALL:Q8X7J1 (EMBL:AE005204) (90 aa) fasta scores: E(): 0.66, 28.3% id in 53 aa; phage regulatory protein complement(750022..750273) Pectobacterium atrosepticum SCRI1043 2881470 YP_048794.1 CDS mug NC_004547.2 750702 751205 D Similar to Escherichia coli, and Escherichia coli O6 G/U mismatch-specific DNA glycosylase Mug or b3068 or c3822 SWALL:MUG_ECOLI (SWALL:P43342) (168 aa) fasta scores: E(): 3.2e-40, 61.35% id in 163 aa; G/U mismatch-specific DNA glycosylase 750702..751205 Pectobacterium atrosepticum SCRI1043 2881596 YP_048795.1 CDS rpoD NC_004547.2 751287 753122 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(751287..753122) Pectobacterium atrosepticum SCRI1043 2884487 YP_048796.1 CDS dnaG NC_004547.2 753277 755031 R synthesizes RNA primers at the replication forks; DNA primase complement(753277..755031) Pectobacterium atrosepticum SCRI1043 2882738 YP_048797.1 CDS rpsU NC_004547.2 755185 755400 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(755185..755400) Pectobacterium atrosepticum SCRI1043 2884459 YP_048798.1 CDS gcp NC_004547.2 755628 756641 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 755628..756641 Pectobacterium atrosepticum SCRI1043 2882356 YP_048799.1 CDS argR NC_004547.2 756736 757206 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR complement(756736..757206) Pectobacterium atrosepticum SCRI1043 2884139 YP_048800.1 CDS mdh NC_004547.2 757677 758612 D oxidizes malate to oxaloacetate; malate dehydrogenase 757677..758612 Pectobacterium atrosepticum SCRI1043 2885116 YP_048801.1 CDS sfsB NC_004547.2 758837 759100 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 5.7e-20, 70.88% id in 79 aa. Also similar to ECA0513 (71.233% id. in 73 aa overlap), and to ECA0966 (72.368% id. in 76 aa overlap), and to ECA3206 (76.119% id. in 67 aa overlap.); sugar fermentation stimulation protein complement(758837..759100) Pectobacterium atrosepticum SCRI1043 2884395 YP_048802.1 CDS ECA0687 NC_004547.2 759288 759674 D Similar to Yersinia pestis hypothetical protein ypo3514 SWALL:AAM84258 (EMBL:AJ414157) (133 aa) fasta scores: E(): 1.9e-17, 47.32% id in 112 aa and to bacteriophage D3112 transposase A SWALL:Q38013 (EMBL:X87627) (690 aa) fasta scores: E(): 0.00026, 33.69% id in 92 aa.; DNA-binding protein 759288..759674 Pectobacterium atrosepticum SCRI1043 2881471 YP_048803.1 CDS ECA0688 NC_004547.2 759882 760298 D Similar to Yersinia pestis hypothetical protein ypo3514 SWALL:Q8ZBA4 (EMBL:AJ414157) (133 aa) fasta scores: E(): 9.5e-19, 45.83% id in 120 aa, and to Bacteriophage D108 repressor protein CI SWALL:RPC1_BPD10 (SWALL:P07040) (174 aa) fasta scores: E(): 0.00012, 42.37% id in 59 aa; hypothetical protein 759882..760298 Pectobacterium atrosepticum SCRI1043 2881783 YP_048804.1 CDS ispB NC_004547.2 760380 761351 R Similar to Escherichia coli, and Shigella flexneri octaprenyl-diphosphate synthase IspB or Cel or b3187 or sf3227 SWALL:ISPB_ECOLI (SWALL:P19641) (323 aa) fasta scores: E(): 7.9e-100, 83.54% id in 322 aa; octaprenyl diphosphate synthase complement(760380..761351) Pectobacterium atrosepticum SCRI1043 2881967 YP_048805.1 CDS rplU NC_004547.2 761608 761919 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L21 RplU SWALL:RL21_ECOLI (SWALL:P02422) (103 aa) fasta scores: E(): 2.4e-34, 92.23% id in 103 aa.; 50S ribosomal protein L21 761608..761919 Pectobacterium atrosepticum SCRI1043 2883228 YP_048806.1 CDS rpmA NC_004547.2 761939 762196 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 761939..762196 Pectobacterium atrosepticum SCRI1043 2883132 YP_048807.1 CDS ECA0692 NC_004547.2 762286 763248 D Similar to Yersinia pestis membrane protein ypo3510 SWALL:AAM84262 (EMBL:AJ414157) (328 aa) fasta scores: E(): 3e-95, 78.77% id in 311 aa, and to Salmonella typhi membrane protein sty3481 SWALL:Q8Z3H0 (EMBL:AL627278) (321 aa) fasta scores: E(): 1.3e-92, 77.24% id in 312 aa; hypothetical protein 762286..763248 Pectobacterium atrosepticum SCRI1043 2881784 YP_048808.1 CDS obgE NC_004547.2 763509 764681 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 763509..764681 Pectobacterium atrosepticum SCRI1043 2881785 YP_048809.1 CDS dacD NC_004547.2 764752 766185 R penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase/endopeptidase complement(764752..766185) Pectobacterium atrosepticum SCRI1043 2881624 YP_048810.1 CDS greA NC_004547.2 766454 766933 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 766454..766933 Pectobacterium atrosepticum SCRI1043 2885813 YP_048811.1 CDS ECA0696 NC_004547.2 767061 767354 R Similar to Salmonella typhimurium, and Salmonella typhi RNA-binding protein containing kh domain stm3298 or sty3476 SWALL:Q8XG58 (EMBL:AE008852) (110 aa) fasta scores: E(): 3.7e-30, 88.66% id in 97 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YhbY SWALL:YHBY_ECOLI (SWALL:P42550) (97 aa) fasta scores: E(): 5.2e-30, 88.66% id in 97 aa.; hypothetical protein complement(767061..767354) Pectobacterium atrosepticum SCRI1043 2881857 YP_048812.1 CDS rrmJ NC_004547.2 767499 768128 D Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase 767499..768128 Pectobacterium atrosepticum SCRI1043 2884455 YP_048813.1 CDS hflB NC_004547.2 768185 770122 D inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease 768185..770122 Pectobacterium atrosepticum SCRI1043 2881803 YP_048814.1 CDS folP NC_004547.2 770241 771074 D catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; dihydropteroate synthase 770241..771074 Pectobacterium atrosepticum SCRI1043 2883365 YP_048815.1 CDS glmM NC_004547.2 771082 772419 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 771082..772419 Pectobacterium atrosepticum SCRI1043 2882003 YP_048816.1 CDS ECA0701 NC_004547.2 772470 772658 D Doubtful CDS. No significant database matches.; hypothetical protein 772470..772658 Pectobacterium atrosepticum SCRI1043 2881858 YP_048817.1 CDS secG NC_004547.2 772670 773002 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein-export membrane protein SecG or b3175 or c3931 or z4537 or ecs4054 SWALL:SECG_ECOLI (SWALL:P33582) (110 aa) fasta scores: E(): 4e-27, 77.27% id in 110 aa; preprotein translocase subunit SecG 772670..773002 Pectobacterium atrosepticum SCRI1043 2884410 YP_048818.1 CDS ECA0704 NC_004547.2 773967 774146 R No significant database matches.; hypothetical protein complement(773967..774146) Pectobacterium atrosepticum SCRI1043 2881521 YP_048819.1 CDS ECA0705 NC_004547.2 774296 >774733 R Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa; degenerate non-ribosomal peptide synthetase (partial) complement(774296..>774733) Pectobacterium atrosepticum SCRI1043 2881522 YP_048820.1 CDS ECA0706 NC_004547.2 <774826 >775116 R Partial CDS. Similar to an internal region of Anabaena sp. peptide synthetase all2644 SWALL:Q8YTR9 (EMBL:AP003590) (2617 aa) fasta scores: E(): 0.00014, 34.44% id in 90 aa, and to Streptomyces coelicolor cda peptide synthetase i cdapsi or sco3230 or sce63.03C SWALL:Q9Z4X6 (EMBL:AL939115) (7463 aa) fasta scores: E(): 0.00077, 36% id in 100 aa; degenerate non-ribosomal peptide synthetase (partial) complement(<774826..>775116) Pectobacterium atrosepticum SCRI1043 2881523 YP_048821.1 CDS ECA0707A NC_004547.2 775623 >775718 R Partial CDS. Similar to Pectobacterium carotovorum subsp. carotovorum hypothetical protein SWALL:Q8GCQ9 (EMBL:AY167733) (197 aa) fasta scores: E(): 1.1e-08, 80.64% id in 31 aa; hypothetical protein complement(775623..>775718) Pectobacterium atrosepticum SCRI1043 2885307 YP_048822.1 CDS evr NC_004547.2 776322 776672 D Similar to Pectobacterium carotovorum subsp. carotovorum virulence regulator Evr SWALL:AAN86997 (EMBL:AY167733) (204 aa) fasta scores: E(): 4.8e-39, 92.98% id in 114 aa. This CDS is truncated at the N-terminus relative to its orthologue in Pectobacterium carotovorum subsp. carotovorum.; virulence regulator 776322..776672 Pectobacterium atrosepticum SCRI1043 2884822 YP_048823.1 CDS ECA0709 NC_004547.2 777129 777248 D Doubtful CDS. No significant database matches.; hypothetical protein 777129..777248 Pectobacterium atrosepticum SCRI1043 2885308 YP_048824.2 CDS ECA0710 NC_004547.2 777277 777729 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 777277..777729 Pectobacterium atrosepticum SCRI1043 2884829 YP_048825.1 CDS nusA NC_004547.2 777751 779280 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 777751..779280 Pectobacterium atrosepticum SCRI1043 2883791 YP_048826.1 CDS infB NC_004547.2 779306 782008 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 779306..782008 Pectobacterium atrosepticum SCRI1043 2881771 YP_048827.1 CDS rbfA NC_004547.2 782083 782481 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 782083..782481 Pectobacterium atrosepticum SCRI1043 2882884 YP_048828.1 CDS truB NC_004547.2 782481 783425 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 782481..783425 Pectobacterium atrosepticum SCRI1043 2884234 YP_048829.1 CDS rpsO NC_004547.2 783547 783816 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 783547..783816 Pectobacterium atrosepticum SCRI1043 2884466 YP_048830.1 CDS pnp NC_004547.2 784066 786186 D Similar to Escherichia coli polyribonucleotide nucleotidyltransferase Pnp or b3164 SWALL:PNP_ECOLI (SWALL:P05055) (711 aa) fasta scores: E(): 0, 88.88% id in 702 aa; polynucleotide phosphorylase 784066..786186 Pectobacterium atrosepticum SCRI1043 2883240 YP_048831.1 CDS nlpI NC_004547.2 786310 787194 D lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 786310..787194 Pectobacterium atrosepticum SCRI1043 2881995 YP_048832.1 CDS deaD NC_004547.2 787369 789282 D participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD 787369..789282 Pectobacterium atrosepticum SCRI1043 2884757 YP_048833.1 CDS ECA0721 NC_004547.2 790573 791451 R Similar to Yersinia pestis hypothetical protein ypo3480 SWALL:Q8ZBD6 (EMBL:AJ414157) (292 aa) fasta scores: E(): 2.5e-100, 79.72% id in 291 aa, and to Escherichia coli hypothetical protein YhbV SWALL:YHBV_ECOLI (SWALL:P45475) (298 aa) fasta scores: E(): 3.9e-93, 75.86% id in 290 aa.; hypothetical protein complement(790573..791451) Pectobacterium atrosepticum SCRI1043 2884831 YP_048834.1 CDS ECA0722 NC_004547.2 791463 792458 R Similar to Proteus mirabilis STM-protease A SWALL:Q9ZA85 (EMBL:AF088981) (334 aa) fasta scores: E(): 3.6e-114, 82.03% id in 334 aa, and to Escherichia coli O157:H7 collagenase yhbu SWALL:Q8XA91 (EMBL:AE005544) (331 aa) fasta scores: E(): 1.3e-122, 87.61% id in 331 aa.; protease complement(791463..792458) Pectobacterium atrosepticum SCRI1043 2884770 YP_048835.1 CDS ECA0723 NC_004547.2 792815 793339 D Similar to Yersinia pestis lipid carrier protein ypo3477 SWALL:Q8ZBD9 (EMBL:AJ414157) (173 aa) fasta scores: E(): 3.9e-49, 74.71% id in 174 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YhbT SWALL:YHBT_ECOLI (SWALL:P45474) (174 aa) fasta scores: E(): 6.7e-44, 71.25% id in 160 aa; sterol transferase 792815..793339 Pectobacterium atrosepticum SCRI1043 2884771 YP_048836.1 CDS ECA0724 NC_004547.2 793333 793875 D Similar to Yersinia pestis acetyltransferase ypo3476 SWALL:AAM84296 (EMBL:AJ414157) (168 aa) fasta scores: E(): 2.7e-45, 70.55% id in 180 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical acetyltransferase YhbS SWALL:YHBS_ECOLI (SWALL:P45473) (167 aa) fasta scores: E(): 2.1e-40, 64.24% id in 179 aa.; acetyltransferase 793333..793875 Pectobacterium atrosepticum SCRI1043 2884772 YP_048837.1 CDS ECA0725 NC_004547.2 793859 794170 R Similar to Yersinia pestis hypothetical protein ypo3475 SWALL:YY75_YERPE (SWALL:Q8ZBE1) (95 aa) fasta scores: E(): 4.5e-25, 80% id in 85 aa, and to Escherichia coli hypothetical protein YhbQ SWALL:YHBQ_ECOLI (SWALL:P45472) (100 aa) fasta scores: E(): 1.4e-18, 70.51% id in 78 aa.; GIY-YIG nuclease superfamily protein complement(793859..794170) Pectobacterium atrosepticum SCRI1043 2884773 YP_048838.1 CDS ECA0726 NC_004547.2 794458 794616 D Doubtful CDS. No significant database matches.; hypothetical protein 794458..794616 Pectobacterium atrosepticum SCRI1043 2884655 YP_048839.1 CDS deoC NC_004547.2 794943 795722 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 794943..795722 Pectobacterium atrosepticum SCRI1043 2883785 YP_048840.1 CDS deoA NC_004547.2 795852 797180 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 795852..797180 Pectobacterium atrosepticum SCRI1043 2883783 YP_048841.1 CDS deoB NC_004547.2 797270 798493 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 797270..798493 Pectobacterium atrosepticum SCRI1043 2883784 YP_048842.1 CDS deoD NC_004547.2 798538 799257 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 798538..799257 Pectobacterium atrosepticum SCRI1043 2883628 YP_048843.1 CDS fcuA NC_004547.2 799578 801830 D Similar to Yersinia enterocolitica ferrichrome receptor FcuA precursor FcuA SWALL:FCUA_YEREN (SWALL:Q05202) (758 aa) fasta scores: E(): 2.6e-175, 59.78% id in 756 aa, and to Bordetella bronchiseptica ferric siderophore receptor BfrB SWALL:P94265 (EMBL:U77671) (734 aa) fasta scores: E(): 1.2e-99, 39.86% id in 725 aa; ferric siderophore TonB-dependent receptor 799578..801830 Pectobacterium atrosepticum SCRI1043 2883138 YP_048844.1 CDS ECA0732 NC_004547.2 801920 802399 R Similar to Yersinia pestis exported protein ypo3993 SWALL:Q8ZA27 (EMBL:AJ414160) (159 aa) fasta scores: E(): 4.2e-40, 67.08% id in 158 aa.; hypothetical protein complement(801920..802399) Pectobacterium atrosepticum SCRI1043 2884656 YP_048845.1 CDS rimI NC_004547.2 802602 803045 R alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase complement(802602..803045) Pectobacterium atrosepticum SCRI1043 2884734 YP_048846.1 CDS holD NC_004547.2 802996 803427 R with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi complement(802996..803427) Pectobacterium atrosepticum SCRI1043 2882119 YP_048847.1 CDS rsmC NC_004547.2 803587 804633 D 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase 803587..804633 Pectobacterium atrosepticum SCRI1043 2884450 YP_048848.1 CDS ECA0736 NC_004547.2 804636 805628 R Similar to Pseudomonas aeruginosa probable oxidoreductase pa2535 SWALL:Q9I0U9 (EMBL:AE004681) (331 aa) fasta scores: E(): 2.8e-91, 70.6% id in 330 aa, and to Salmonella typhi aldo/keto reductase sty0158 SWALL:Q8Z9G1 (EMBL:AL627265) (329 aa) fasta scores: E(): 1.5e-88, 69.69% id in 330 aa.; aldo/keto reductase complement(804636..805628) Pectobacterium atrosepticum SCRI1043 2884657 YP_048849.1 CDS ECA0737 NC_004547.2 805742 806647 D Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2534 SWALL:Q9I0V0 (EMBL:AE004681) (303 aa) fasta scores: E(): 9.2e-53, 51.16% id in 301 aa; LysR family transcriptional regulator 805742..806647 Pectobacterium atrosepticum SCRI1043 2884785 YP_048850.1 CDS ECA0738 NC_004547.2 807282 807521 R Similar to Yersinia pestis hypothetical y3754 SWALL:AAM87300 (EMBL:AE013978) (108 aa) fasta scores: E(): 8.3e-16, 46.66% id in 90 aa, and to Yersinia pestis membrane protein ypo0426 SWALL:Q8ZIR4 (EMBL:AJ414142) (79 aa) fasta scores: E(): 2.3e-13, 50.68% id in 73 aa.; hypothetical protein complement(807282..807521) Pectobacterium atrosepticum SCRI1043 2884786 YP_048851.1 CDS budR NC_004547.2 807679 808581 R Similar to Klebsiella terrigena bud operon transcriptional regulator BudR SWALL:BUDR_KLETE (SWALL:P52666) (290 aa) fasta scores: E(): 1.3e-47, 48.44% id in 289 aa, and to Salmonella typhimurium transcriptional regulator StmR SWALL:Q9RQ20 (EMBL:AF134978) (292 aa) fasta scores: E(): 2.6e-35, 37.71% id in 289 aa; LysR family transcriptional regulator complement(807679..808581) Pectobacterium atrosepticum SCRI1043 2881862 YP_048852.1 CDS budA NC_004547.2 808710 809492 D Similar to Enterobacter aerogenes alpha-acetolactate decarboxylase aldC SWALL:ALDC_ENTAE (SWALL:P05361) (260 aa) fasta scores: E(): 6.2e-63, 59.76% id in 251 aa, and to Klebsiella terrigena alpha-acetolactate decarboxylase budA SWALL:ALDC_KLETE (SWALL:Q04518) (259 aa) fasta scores: E(): 1.1e-62, 58.26% id in 254 aa; alpha-acetolactate decarboxylase 808710..809492 Pectobacterium atrosepticum SCRI1043 2882299 YP_048853.1 CDS budB NC_004547.2 809514 811193 D catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 809514..811193 Pectobacterium atrosepticum SCRI1043 2881860 YP_048854.1 CDS fucO NC_004547.2 811260 812414 R Similar to Escherichia coli, and Escherichia coli O157:H7 lactaldehyde reductase FucO or b2799 or z4116 or ecs3659 SWALL:FUCO_ECOLI (SWALL:P11549) (383 aa) fasta scores: E(): 1.5e-104, 73.69% id in 384 aa; L-1,2-propanediol oxidoreductase complement(811260..812414) Pectobacterium atrosepticum SCRI1043 2883482 YP_048855.1 CDS gcvT NC_004547.2 812975 814090 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 812975..814090 Pectobacterium atrosepticum SCRI1043 2881790 YP_048856.1 CDS gcvH NC_004547.2 814149 814541 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 814149..814541 Pectobacterium atrosepticum SCRI1043 2882289 YP_048857.1 CDS gcvP NC_004547.2 814656 817529 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 814656..817529 Pectobacterium atrosepticum SCRI1043 2882290 YP_048858.1 CDS ECA0746 NC_004547.2 817798 818163 R Similar to Bradyrhizobium japonicum transcriptional regulatory protein bll5370 SWALL:BAC50635 (EMBL:AP005954) (128 aa) fasta scores: E(): 2.4e-12, 48.51% id in 101 aa, and to Anabaena sp. hypothetical proteinalr2106 SWALL:Q8YV75 (EMBL:AP003588) (110 aa) fasta scores: E(): 6e-12, 41.5% id in 106 aa. Note that there are no significant database matches to enterobacterial species.; transcriptional regulator complement(817798..818163) Pectobacterium atrosepticum SCRI1043 2884787 YP_048859.1 CDS ECA0747 NC_004547.2 818265 819005 D Similar to Agrobacterium tumefaciens NAD/NADP dependent oxidoreductase atu5391 or agr_pat_564 SWALL:Q8UJT4 (EMBL:AE008960) (286 aa) fasta scores: E(): 4.9e-43, 52.4% id in 250 aa, and to Bradyrhizobium japonicum oxidoreductase bll5108 SWALL:BAC50373 (EMBL:AP005953) (281 aa) fasta scores: E(): 1e-29, 43.21% id in 243 aa; short chain dehydrogenase 818265..819005 Pectobacterium atrosepticum SCRI1043 2884079 YP_048860.1 CDS ECA0748 NC_004547.2 819141 820013 D Similar to Bradyrhizobium japonicum protein bll4140 SWALL:BAC49405 (EMBL:AP005950) (325 aa) fasta scores: E(): 4.8e-47, 48.18% id in 276 aa, and to Bifidobacterium longum sugar permease of ABC transporter system bl0189 SWALL:AAN24043 (EMBL:AE014636) (317 aa) fasta scores: E(): 7.2e-31, 34.73% id in 285 aa. Note that there are no significant database matches to enterobacterial species.; binding-protein-dependent transport system protein 819141..820013 Pectobacterium atrosepticum SCRI1043 2884080 YP_048861.1 CDS ECA0749 NC_004547.2 820003 820902 D Similar to Bradyrhizobium japonicum protein bll4139 SWALL:BAC49404 (EMBL:AP005950) (289 aa) fasta scores: E(): 2.1e-57, 52.98% id in 268 aa, and to Oceanobacillus iheyensis sugar binding-protein dependent transporter system permease ob3422 SWALL:BAC15378 (EMBL:AP004604) (269 aa) fasta scores: E(): 4.8e-32, 33.58% id in 265 aa; binding-protein-dependent transport system protein 820003..820902 Pectobacterium atrosepticum SCRI1043 2884081 YP_048862.1 CDS ECA0750 NC_004547.2 821149 821973 D Similar to Ralstonia solanacearum hypothetical protein rsc1795 SWALL:Q8XYG3 (EMBL:AL646066) (282 aa) fasta scores: E(): 8.5e-24, 31.4% id in 277 aa, and to Streptomyces avermitilis cyclic nucleotide phosphodiesterase SWALL:Q93GX3 (EMBL:AB070957) (257 aa) fasta scores: E(): 3.8e-15, 26.64% id in 259 aa.; calcineurin-like phosphoesterase 821149..821973 Pectobacterium atrosepticum SCRI1043 2884082 YP_048863.1 CDS ECA0751 NC_004547.2 821973 823061 D Similar to Escherichia coli sn-glycerol-3-phosphate transport ATP-binding protein UgpC or b3450 SWALL:UGPC_ECOLI (SWALL:P10907) (356 aa) fasta scores: E(): 7.9e-56, 47.05% id in 357 aa, and to Salmonella typhimurium maltose/maltodextrin transport ATP-binding protein MalK or stm4230 SWALL:MALK_SALTY (SWALL:P19566) (369 aa) fasta scores: E(): 6.8e-54, 47.58% id in 372 aa; sugar ABC transporter ATP-binding protein 821973..823061 Pectobacterium atrosepticum SCRI1043 2883875 YP_048864.1 CDS ECA0752 NC_004547.2 823054 824361 D Similar to Escherichia coli, and Escherichia coli O157:H7 glycerol-3-phosphate-binding periplasmic protein precursor UgpB or b3453 or z4822 or ecs4299 SWALL:UGPB_ECOLI (SWALL:P10904) (438 aa) fasta scores: E(): 4e-21, 27.46% id in 386 aa, and to Bradyrhizobium japonicum Bll4138 protein bll4138 SWALL:BAC49403 (EMBL:AP005950) (444 aa) fasta scores: E(): 5.7e-71, 47.5% id in 440 aa; sugar ABC transporter periplasmic-binding protein 823054..824361 Pectobacterium atrosepticum SCRI1043 2883876 YP_048865.1 CDS lacY NC_004547.2 824423 825685 R lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments; galactoside permease complement(824423..825685) Pectobacterium atrosepticum SCRI1043 2882882 YP_048866.1 CDS rafA NC_004547.2 825780 827924 R Similar to Escherichia coli alpha-galactosidase RafA SWALL:RAFA_ECOLI (SWALL:P16551) (708 aa) fasta scores: E(): 7.5e-208, 67.66% id in 705 aa.; alpha-galactosidase complement(825780..827924) Pectobacterium atrosepticum SCRI1043 2882881 YP_048867.1 CDS rafR NC_004547.2 828144 829148 R Similar to Escherichia coli raffinose operon repressor RafR SWALL:RAFR_ECOLI (SWALL:P21867) (335 aa) fasta scores: E(): 7.5e-64, 52.87% id in 331 aa; LysR family transcriptional regulator complement(828144..829148) Pectobacterium atrosepticum SCRI1043 2882883 YP_048868.1 CDS ECA0756 NC_004547.2 829202 829810 R Similar to Vibrio pelagius hypothetical protein SWALL:AAN86353 (EMBL:AY014401) (195 aa) fasta scores: E(): 6.6e-31, 48.37% id in 184 aa, and to Deinococcus radiodurans hypothetical protein dr0704 SWALL:Q9RWG4 (EMBL:AE001927) (198 aa) fasta scores: E(): 1.2e-20, 38.77% id in 196 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein complement(829202..829810) Pectobacterium atrosepticum SCRI1043 2883552 YP_048869.1 CDS ECA0757 NC_004547.2 830229 830876 D Similar to Bacillus cereus hemolysin III SWALL:HLY3_BACCE (SWALL:P54176) (219 aa) fasta scores: E(): 3.8e-35, 44.6% id in 213 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yqfa or b2899 or c3480 or z4237 or ecs3771 or sf2885 SWALL:YQFA_ECOLI (SWALL:Q46827) (219 aa) fasta scores: E(): 4e-68, 83.98% id in 206 aa; hypothetical protein 830229..830876 Pectobacterium atrosepticum SCRI1043 2883553 YP_048870.1 CDS ECA0758 NC_004547.2 831100 832101 R physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; global regulator complement(831100..832101) Pectobacterium atrosepticum SCRI1043 2883554 YP_048871.1 CDS ECA0759 NC_004547.2 832337 832603 D Similar to Yersinia pestis hypothetical protein ypo0897 SWALL:Q8ZHJ5 (EMBL:AJ414145) (88 aa) fasta scores: E(): 4.2e-29, 77.27% id in 88 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YgfY SWALL:YGFY_ECOLI (SWALL:Q46825) (88 aa) fasta scores: E(): 3.4e-28, 73.86% id in 88 aa.; hypothetical protein 832337..832603 Pectobacterium atrosepticum SCRI1043 2883523 YP_048872.1 CDS ECA0760 NC_004547.2 832584 832997 D Similar to Escherichia coli hypothetical protein YgfX SWALL:YGFX_ECOLI (SWALL:Q46824) (135 aa) fasta scores: E(): 3.6e-29, 56.39% id in 133 aa.; hypothetical protein 832584..832997 Pectobacterium atrosepticum SCRI1043 2883524 YP_048873.1 CDS ECA0761 NC_004547.2 833305 834240 D Similar to Salmonella typhimurium SAM-dependent methyltransferase stm0826 SWALL:Q8ZQN4 (EMBL:AE008734) (308 aa) fasta scores: E(): 9.1e-81, 62.54% id in 307 aa, and to Escherichia coli hypothetical protein YbiN SWALL:YBIN_ECOLI (SWALL:P75782) (308 aa) fasta scores: E(): 1e-79, 61.23% id in 307 aa.; SAM-dependent methyltransferase 833305..834240 Pectobacterium atrosepticum SCRI1043 2883525 YP_048874.1 CDS ECA0762 NC_004547.2 834358 834681 R Similar to Xanthomonas campestris hypothetical protein Xcc0818 SWALL:Q8PCB6 (EMBL:AE012181) (122 aa) fasta scores: E(): 2.6e-06, 38.46% id in 104 aa. Note that there are no other significant database matches.; lipoprotein complement(834358..834681) Pectobacterium atrosepticum SCRI1043 2883418 YP_048875.1 CDS fldB NC_004547.2 834710 835228 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB complement(834710..835228) Pectobacterium atrosepticum SCRI1043 2881793 YP_048876.1 CDS ECA0764 NC_004547.2 835456 835632 D No significant database matches. Possible false CDS.; hypothetical protein 835456..835632 Pectobacterium atrosepticum SCRI1043 2883419 YP_048877.1 CDS ECA0765 NC_004547.2 835647 836093 R Similar to Xanthomonas axonopodis hypothetical protein xac2605 SWALL:Q8PJD0 (EMBL:AE011901) (147 aa) fasta scores: E(): 5.7e-05, 40.54% id in 74 aa, and to Caulobacter crescentus hypothetical protein cc2994 SWALL:Q9A449 (EMBL:AE005962) (137 aa) fasta scores: E(): 8.4e-05, 35.08% id in 114 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein complement(835647..836093) Pectobacterium atrosepticum SCRI1043 2883420 YP_048878.1 CDS ECA0766 NC_004547.2 836294 836902 R Similar to Xanthomonas campestris hypothetical protein xcc3622 SWALL:Q8P4T4 (EMBL:AE012483) (232 aa) fasta scores: E(): 5.2e-16, 36.15% id in 177 aa, and to Xanthomonas axonopodis hypothetical protein xac0573 SWALL:Q8PPW0 (EMBL:AE011684) (232 aa) fasta scores: E(): 7.7e-15, 35.02% id in 177 aa. Note that the only significant database matches are to Xanthomonas campestris.; hypothetical protein complement(836294..836902) Pectobacterium atrosepticum SCRI1043 2883421 YP_048879.1 CDS ECA0767 NC_004547.2 837169 837669 R Similar to Xanthomonas campestris hypothetical protein xcc3298 SWALL:Q8P5N8 (EMBL:AE012447) (171 aa) fasta scores: E(): 3e-10, 33.33% id in 174 aa, and to Xanthomonas campestris hypothetical protein xcc3128 SWALL:Q8P649 (EMBL:AE012428) (182 aa) fasta scores: E(): 3.2e-10, 34.44% id in 180 aa. Note that the only significant database matches are to Xanthomonas spp.; hypothetical protein complement(837169..837669) Pectobacterium atrosepticum SCRI1043 2883383 YP_048880.1 CDS ECA0768 NC_004547.2 837920 838096 R No significant database matches.; hypothetical protein complement(837920..838096) Pectobacterium atrosepticum SCRI1043 2883384 YP_048881.1 CDS ECA0769 NC_004547.2 838230 839555 R Similar to Shigella flexneri transport protein sf3555 SWALL:AAN45008 (EMBL:AE015363) (440 aa) fasta scores: E(): 7.7e-133, 82.08% id in 441 aa, and to Escherichia coli hypothetical metabolite transport protein YhjE SWALL:YHJE_ECOLI (SWALL:P37643) (440 aa) fasta scores: E(): 2.6e-132, 81.63% id in 441 aa and to Escherichia coli shikimate transporter ShiA SWALL:SHIA_ECOLI (SWALL:P76350) (438 aa) fasta scores: E(): 1.5e-47, 36.01% id in 447 aa; transporter complement(838230..839555) Pectobacterium atrosepticum SCRI1043 2883385 YP_048882.1 CDS xerD NC_004547.2 839867 840766 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 839867..840766 Pectobacterium atrosepticum SCRI1043 2882648 YP_048883.1 CDS dsbC NC_004547.2 840892 841608 D DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC 840892..841608 Pectobacterium atrosepticum SCRI1043 2882416 YP_048884.1 CDS recJ NC_004547.2 841615 843360 D 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 841615..843360 Pectobacterium atrosepticum SCRI1043 2885105 YP_048885.1 CDS prfB NC_004547.2 843475 844573 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 join(843475..843549,843551..844573) Pectobacterium atrosepticum SCRI1043 2882307 YP_048886.1 CDS lysS NC_004547.2 844582 846099 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 844582..846099 Pectobacterium atrosepticum SCRI1043 2882228 YP_048887.1 CDS ECA0775 NC_004547.2 846356 847111 D Similar to Pseudomonas aeruginosa ChpD SWALL:O87004 (EMBL:U79580) (264 aa) fasta scores: E(): 8.8e-26, 38.49% id in 239 aa, and to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 6.6e-15, 32.51% id in 243 aa. Note that there are no significant database matches to enterobacterial species.; AraC family transcriptional regulator 846356..847111 Pectobacterium atrosepticum SCRI1043 2883283 YP_048888.1 CDS ECA0776 NC_004547.2 847174 847857 D Similar to Pseudomonas aeruginosa hypothetical protein pa1620 SWALL:Q9I3A2 (EMBL:AE004589) (213 aa) fasta scores: E(): 5.3e-07, 27.31% id in 216 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein 847174..847857 Pectobacterium atrosepticum SCRI1043 2883284 YP_048889.1 CDS ECA0777 NC_004547.2 848523 849212 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phage shock protein a pspa or b1304 or z2482 or ecs1881 or sf1309 SWALL:PSPA_ECOLI (SWALL:P23853) (221 aa) fasta scores: E(): 0.00016, 20% id in 225 aa, and to Oceanobacillus iheyensis phage shock protein a ob0940 SWALL:BAC12896 (EMBL:AP004596) (223 aa) fasta scores: E(): 7.9e-11, 26.87% id in 227 aa; hypothetical protein 848523..849212 Pectobacterium atrosepticum SCRI1043 2883285 YP_048890.1 CDS ECA0778 NC_004547.2 849288 851009 D No significant database matches.; hypothetical protein 849288..851009 Pectobacterium atrosepticum SCRI1043 2883159 YP_048891.1 CDS ECA0779 NC_004547.2 851060 851452 D Similar to Bacillus subtilis hypothetical protein YybH yybH SWALL:YYBH_BACSU (SWALL:P37496) (129 aa) fasta scores: E(): 3.6e-22, 53.22% id in 124 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein 851060..851452 Pectobacterium atrosepticum SCRI1043 2883160 YP_048892.1 CDS ECA0780 NC_004547.2 851563 852633 R Similar to Xanthomonas campestris regulatory protein RpfI SWALL:Q8P9L0 (EMBL:AE012287) (342 aa) fasta scores: E(): 1.6e-36, 37.79% id in 344 aa. The Xanthomonas campestris RpfI is thought to be involved in the regulation of pathogenicity factor production. Note that there are no significant database matches to enterobacterial species.; hypothetical protein complement(851563..852633) Pectobacterium atrosepticum SCRI1043 2883161 YP_048893.2 CDS ddg NC_004547.2 853012 853935 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; lipid A biosynthesis palmitoleoyl acyltransferase 853012..853935 Pectobacterium atrosepticum SCRI1043 2884755 YP_048894.1 CDS ECA0782 NC_004547.2 854244 854660 R No significant database matches.; hypothetical protein complement(854244..854660) Pectobacterium atrosepticum SCRI1043 2883162 YP_048895.1 CDS ECA0783 NC_004547.2 854876 856231 D Similar to Yersinia pestis xanthine/uracil permease ypo3629 or y0239 SWALL:Q8ZB00 (EMBL:AJ414158) (451 aa) fasta scores: E(): 7.4e-142, 87.58% id in 451 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yjcd yjcd or b4064 or z5663 or ecs5046 SWALL:YJCD_ECOLI (SWALL:P32702) (449 aa) fasta scores: E(): 4.7e-133, 82.58% id in 448 aa; permease 854876..856231 Pectobacterium atrosepticum SCRI1043 2883048 YP_048896.1 CDS ECA0784 NC_004547.2 856625 858271 D Similar to Yersinia pestis sodium/hydrogen exchanger ypo3630 SWALL:Q8ZAZ9 (EMBL:AJ414158) (549 aa) fasta scores: E(): 4.4e-165, 79.19% id in 548 aa, and to Escherichia coli sodium/hydrogen exchanger SWALL:YJCE_ECOLI (SWALL:P32703) (549 aa) fasta scores: E(): 4.1e-155, 75.45% id in 546 aa; sodium/hydrogen antiporter 856625..858271 Pectobacterium atrosepticum SCRI1043 2883049 YP_048897.1 CDS ECA0785 NC_004547.2 858630 859340 D Similar to Alcaligenes eutrophus transcriptional activator protein CzcR czcR SWALL:CZCR_ALCEU (SWALL:Q44006) (225 aa) fasta scores: E(): 8.9e-30, 42.15% id in 223 aa, and to Brucella suis DNA-binding response regulator br0612 SWALL:AAN29541 (EMBL:AE014368) (235 aa) fasta scores: E(): 5.5e-33, 43.27% id in 238 aa; two component system response regulator 858630..859340 Pectobacterium atrosepticum SCRI1043 2882970 YP_048898.1 CDS ECA0786 NC_004547.2 859318 860817 D Similar to Pseudomonas putida sensor histidine kinase pp2906 SWALL:AAN68514 (EMBL:AE016784) (463 aa) fasta scores: E(): 2.3e-32, 30.91% id in 427 aa, and to Rhizobium loti sensory histidine protein kinase mlr4459 SWALL:Q98E08 (EMBL:AP003004) (458 aa) fasta scores: E(): 1.2e-30, 31.25% id in 464 aa; two component system sensor kinase 859318..860817 Pectobacterium atrosepticum SCRI1043 2882971 YP_048899.1 CDS ECA0787 NC_004547.2 861360 861911 D Similar to Rhizobium loti type IV prepilin peptidase, CpaA mlr5594 SWALL:Q98BF9 (EMBL:AP003007) (175 aa) fasta scores: E(): 3.7e-05, 30.53% id in 167 aa, and to Rhizobium meliloti probable CpaA2 pilus assembly protein SWALL:Q92YL6 (EMBL:AE007272) (170 aa) fasta scores: E(): 6.4e-05, 28.48% id in 172 aa; hypothetical protein 861360..861911 Pectobacterium atrosepticum SCRI1043 2882972 YP_048900.1 CDS ECA0788 NC_004547.2 861960 862904 D Similar to Bradyrhizobium japonicum CtpC protein SWALL:BAC45932 (EMBL:AP005937) (270 aa) fasta scores: E(): 2.7e-09, 30.96% id in 281 aa, and to Vibrio vulnificus flp pilus assembly protein CpaB vv12330 SWALL:AAO10705 (EMBL:AE016804) (279 aa) fasta scores: E(): 8.4e-09, 28.94% id in 304 aa; hypothetical protein 861960..862904 Pectobacterium atrosepticum SCRI1043 2885492 YP_048901.1 CDS ECA0789 NC_004547.2 862985 864421 D Similar to Actinobacillus actinomycetemcomitans rough colony protein A RcpA SWALL:Q9X6J1 (EMBL:AF139249) (460 aa) fasta scores: E(): 2.1e-15, 29.2% id in 404 aa, and to Escherichia coli protein transport protein HofQ precursor SWALL:HOFQ_ECOLI (SWALL:P34749) (412 aa) fasta scores: E(): 2.9e-10, 24.71% id in 433 aa, and to Salmonella typhi type II secretion system protein HofQ SWALL:Q8Z206 (EMBL:AL627281) (412 aa) fasta scores: E(): 7e-10, 27.27% id in 253 aa; hypothetical protein 862985..864421 Pectobacterium atrosepticum SCRI1043 2885493 YP_048902.1 CDS ECA0790 NC_004547.2 864443 865129 D Similar to Agrobacterium tumefaciens components of type IV pilus CtpE SWALL:Q8UIS2 (EMBL:AE008995) (250 aa) fasta scores: E(): 0.0024, 23.63% id in 220 aa, and to Rhizobium meliloti hypothetical protein r00142 r00142 or smc04110 SWALL:Q92KU4 (EMBL:AL591782) (226 aa) fasta scores: E(): 0.81, 21.62% id in 222 aa; lipoprotein 864443..865129 Pectobacterium atrosepticum SCRI1043 2885494 YP_048903.1 CDS ECA0791 NC_004547.2 865144 866343 D Similar to Bradyrhizobium japonicum protein blr3493 SWALL:BAC48758 (EMBL:AP005947) (481 aa) fasta scores: E(): 1.7e-20, 26.68% id in 371 aa, and to Caulobacter crescentus pilus assembly protein CpaE SWALL:Q9A495 (EMBL:AE005958) (517 aa) fasta scores: E(): 7.2e-16, 27.76% id in 371 aa, and to Agrobacterium tumefaciens components of type IV pilus CtpF SWALL:Q8UIS3 (EMBL:AE008995) (462 aa) fasta scores: E(): 5.2e-13, 29.79% id in 292 aa.; Similar to Bradyrhizobium japonicum Blr3493 protein blr3493 SWALL:BAC48758 (EMBL:AP005947) (481 aa) fasta scores: E(): 1.7e-20, 26.68% id in 371 aa; hypothetical protein 865144..866343 Pectobacterium atrosepticum SCRI1043 2882334 YP_048904.1 CDS ECA0792 NC_004547.2 866383 867786 D Similar to Caulobacter crescentus CpaF SWALL:Q9L714 (EMBL:AF229646) (501 aa) fasta scores: E(): 6.1e-65, 45.13% id in 452 aa, and to Bradyrhizobium japonicum component of type iv pilus blr3494 SWALL:BAC48759 (EMBL:AP005947) (458 aa) fasta scores: E(): 1.7e-74, 55.01% id in 429 aa, and to Vibrio vulnificus flp pilus assembly protein vv11755 SWALL:AAO10167 (EMBL:AE016802) (495 aa) fasta scores: E(): 6.7e-66, 44.73% id in 465 aa; type IV pilus protein 866383..867786 Pectobacterium atrosepticum SCRI1043 2882335 YP_048905.1 CDS ECA0793 NC_004547.2 867805 868785 D Similar to Vibrio vulnificus flp pilus assembly protein tadB vv12335 SWALL:AAO10710 (EMBL:AE016804) (294 aa) fasta scores: E(): 7.9e-20, 28.38% id in 310 aa, and to Actinobacillus actinomycetemcomitans TadB SWALL:Q9XC05 (EMBL:AF152598) (295 aa) fasta scores: E(): 7.7e-14, 27.57% id in 243 aa; type IV pilus protein 867805..868785 Pectobacterium atrosepticum SCRI1043 2882336 YP_048906.1 CDS ECA0794 NC_004547.2 868800 869759 D Similar to Vibrio vulnificus flp pilus assembly protein TadC vv12336 SWALL:AAO10711 (EMBL:AE016804) (293 aa) fasta scores: E(): 2.7e-25, 31.34% id in 319 aa, and to Agrobacterium tumefaciens components of type IV pilus CtpI or atu0216 or agr_c_371 SWALL:Q8UIS6 (EMBL:AE008995) (328 aa) fasta scores: E(): 2.7e-24, 34.12% id in 296 aa; type IV pilus protein 868800..869759 Pectobacterium atrosepticum SCRI1043 2882337 YP_048907.1 CDS ECA0795 NC_004547.2 869860 870711 D Similar to Bradyrhizobium japonicum Blr1433 protein blr1433 SWALL:BAC46698 (EMBL:AP005940) (271 aa) fasta scores: E(): 0.00039, 29.04% id in 272 aa, and to Rhizobium loti O-linked glcnac transferase mlr3120 SWALL:Q98GY3 (EMBL:AP003001) (280 aa) fasta scores: E(): 0.00027, 25.61% id in 246 aa; hypothetical protein 869860..870711 Pectobacterium atrosepticum SCRI1043 2885416 YP_048908.1 CDS ECA0796 NC_004547.2 870711 871259 D No significant database matches.; hypothetical protein 870711..871259 Pectobacterium atrosepticum SCRI1043 2885417 YP_048909.1 CDS ECA0797 NC_004547.2 871252 871884 D No significant database matches.; hypothetical protein 871252..871884 Pectobacterium atrosepticum SCRI1043 2885418 YP_048910.1 CDS ECA0798 NC_004547.2 872064 873695 D Similar to Vibrio vulnificus conserved hypothetical protein vv12340 SWALL:AAO10715 (EMBL:AE016804) (465 aa) fasta scores: E(): 0.14, 24.52% id in 424 aa, and to Salmonella typhimurium peptidase b pepb or stm2536 SWALL:PEPB_SALTY (SWALL:Q9RF52) (427 aa) fasta scores: E(): 1.8, 23.39% id in 265 aa; hypothetical protein 872064..873695 Pectobacterium atrosepticum SCRI1043 2885440 YP_048911.1 CDS ECA0799 NC_004547.2 873754 883440 D Similar to Bradyrhizobium japonicum Bll3563 protein bll3563 SWALL:BAC48828 (EMBL:AP005948) (3441 aa) fasta scores: E(): 8.9e-20, 22.46% id in 3387 aa, and to Brucella suis outer membrane autotransporter bra1148 SWALL:AAN34307 (EMBL:AE014607) (3420 aa) fasta scores: E(): 6.1e-08, 22.91% id in 3217 aa; outer membrane protein 873754..883440 Pectobacterium atrosepticum SCRI1043 2885441 YP_048912.1 CDS ECA0800 NC_004547.2 883680 885470 D Similar to Chromobacterium violaceum hypothetical protein cv0465 SWALL:Q7P0V0 (EMBL:AE016911) (527 aa) fasta scores: E(): 9.9e-65, 40.31% id in 506 aa; hypothetical protein 883680..885470 Pectobacterium atrosepticum SCRI1043 2885442 YP_048913.1 CDS ECA0801 NC_004547.2 885470 886228 D Similar to Vibrio cholerae hypothetical protein vc0913 SWALL:Q9KTI9 (EMBL:AE004175) (352 aa) fasta scores: E(): 2.3e-10, 26.29% id in 232 aa, and to Shewanella oneidensis HlyD family secretion protein so3483 SWALL:AAN56476 (EMBL:AE015784) (369 aa) fasta scores: E(): 2.4e-09, 25.49% id in 251 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein 885470..886228 Pectobacterium atrosepticum SCRI1043 2881662 YP_048914.1 CDS ECA0802 NC_004547.2 886225 887580 D Similar to Vibrio cholerae hypothetical protein vc0913 SWALL:Q9KTI9 (EMBL:AE004175) (352 aa) fasta scores: E(): 1.9e-05, 24.12% id in 228 aa, and to Vibrio cholerae periplasmic linker protein, vc1756 SWALL:Q9KR86 (EMBL:AE004253) (364 aa) fasta scores: E(): 4e-05, 27.53% id in 247 aa.; hypothetical protein 886225..887580 Pectobacterium atrosepticum SCRI1043 2881663 YP_048915.1 CDS ECA0803 NC_004547.2 887598 889712 D hypothetical protein 887598..889712 Pectobacterium atrosepticum SCRI1043 2881664 YP_048916.1 CDS rhiE NC_004547.2 890040 891770 D Similar to Erwinia chrysanthemi rhamnogalacturonase precursor RhiE SWALL:Q8RJP2 (EMBL:AJ438339) (578 aa) fasta scores: E(): 1.3e-133, 60.1% id in 554 aa. The only other significant database matches are of eukaryotic origin.; rhamnogalacturonate lyase 890040..891770 Pectobacterium atrosepticum SCRI1043 2884605 YP_048917.1 CDS ECA0805 NC_004547.2 891899 892831 R Similar to Salmonella typhi hypothetical protein sty4288 SWALL:Q8Z220 (EMBL:AL627281) (308 aa) fasta scores: E(): 3.3e-57, 51.82% id in 301 aa, and to Erwinia amylovora hypothetical 37.6 kDa protein SWALL:Q9F805 (EMBL:AF264948) (332 aa) fasta scores: E(): 2.9e-54, 48.67% id in 302 aa, and to Escherichia coli hypothetical protein YfaD SWALL:YFAD_ECOLI (SWALL:P37014) (299 aa) fasta scores: E(): 8.6e-48, 47.82% id in 299 aa.; hypothetical protein complement(891899..892831) Pectobacterium atrosepticum SCRI1043 2881665 YP_048918.1 CDS actP NC_004547.2 893086 894744 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(893086..894744) Pectobacterium atrosepticum SCRI1043 2881362 YP_048919.1 CDS ECA0807 NC_004547.2 894741 895052 R Similar to Escherichia coli, and Shigella flexneri hypothetical protein YjcH SWALL:YJCH_ECOLI (SWALL:P32706) (104 aa) fasta scores: E(): 7.3e-27, 71.56% id in 102 aa, and to Salmonella typhi membrane protein sty4472 SWALL:Q8Z1R1 (EMBL:AL627282) (104 aa) fasta scores: E(): 1.7e-25, 70.58% id in 102 aa; hypothetical protein complement(894741..895052) Pectobacterium atrosepticum SCRI1043 2881363 YP_048920.1 CDS hexY NC_004547.2 898041 898433 D Similar to Pectobacterium carotovorum subsp. atrosepticum global regulatory protein HexY SWALL:Q9RB06 (EMBL:AF182073) (130 aa) fasta scores: E(): 8.2e-49, 99.23% id in 130 aa, and to Pectobacterium carotovorum subsp. carotovorum global regulatory protein HexY or RsmC SWALL:Q9R2P5 (EMBL:AF182072) (130 aa) fasta scores: E(): 9.6e-49, 99.23% id in 130 aa. No other significant database matches.; global regulatory protein 898041..898433 Pectobacterium atrosepticum SCRI1043 2881802 YP_048921.1 CDS ECA0810 NC_004547.2 898436 898591 D hypothetical protein 898436..898591 Pectobacterium atrosepticum SCRI1043 2882178 YP_048922.1 CDS ECA0811 NC_004547.2 899255 901552 D Similar to Vibrio cholerae ferrichrome outer membrane receptor FhuA fhuA SWALL:Q9RF13 (EMBL:AF203702) (700 aa) fasta scores: E(): 2.8e-96, 40.61% id in 687 aa, and to Bradyrhizobium japonicum FegA SWALL:P70921 (EMBL:U61401) (750 aa) fasta scores: E(): 1.5e-78, 35.22% id in 738 aa; TonB-dependent ferrichrome receptor 899255..901552 Pectobacterium atrosepticum SCRI1043 2882179 YP_048923.1 CDS ECA0813 NC_004547.2 901717 902241 D Similar to Bordetella avium RhuI SWALL:Q8L1U9 (EMBL:AY095952) (168 aa) fasta scores: E(): 5.1e-26, 45% id in 160 aa, and to Escherichia coli probable RNA polymerase sigma factor feci feci or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 2.1e-22, 43.94% id in 157 aa; RNA polymerase sigma factor 901717..902241 Pectobacterium atrosepticum SCRI1043 2882180 YP_048924.1 CDS ECA0814 NC_004547.2 902238 903185 D Similar to Escherichia coli protein FecR SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 4.1e-27, 33.01% id in 315 aa, and to Pseudomonas putida PupR protein SWALL:Q52209 (EMBL:X77918) (324 aa) fasta scores: E(): 3.3e-23, 29.9% id in 321 aa, and to Bordetella avium RhuR SWALL:Q8L1U8 (EMBL:AY095952) (307 aa) fasta scores: E(): 3.3e-17, 27.12% id in 317 aa; iron sensor protein 902238..903185 Pectobacterium atrosepticum SCRI1043 2881890 YP_048925.1 CDS ECA0815 NC_004547.2 903368 904378 D Similar to Pseudomonas putida membrane protein, pp4850 SWALL:AAN70419 (EMBL:AE016792) (355 aa) fasta scores: E(): 6.8e-61, 51.66% id in 331 aa, and to Ralstonia solanacearum probable transmembrane protein rsp0411 SWALL:Q8XSQ6 (EMBL:AL646078) (341 aa) fasta scores: E(): 3.4e-43, 42.07% id in 328 aa; hypothetical protein 903368..904378 Pectobacterium atrosepticum SCRI1043 2881891 YP_048926.1 CDS ECA0816 NC_004547.2 904530 905147 D Similar to Clostridium acetobutylicum predicted membrane protein, hemolysin iii homolog cac0947 SWALL:Q97KH2 (EMBL:AE007610) (211 aa) fasta scores: E(): 0.68, 25.25% id in 194 aa; hypothetical protein 904530..905147 Pectobacterium atrosepticum SCRI1043 2881892 YP_048927.1 CDS togT NC_004547.2 905222 906748 R Similar to Erwinia chrysanthemi oligogalacturonide transporter TogT SWALL:Q93KC2 (EMBL:AJ305143) (508 aa) fasta scores: E(): 5.8e-176, 84.81% id in 507 aa. Also similar to ECA3560 (40.426% id. in 517 aa overlap); oligogalacturonide transporter complement(905222..906748) Pectobacterium atrosepticum SCRI1043 2884271 YP_048928.1 CDS ECA0818 NC_004547.2 907056 907505 D No significant database matches.; hypothetical protein 907056..907505 Pectobacterium atrosepticum SCRI1043 2881217 YP_048929.1 CDS uxuB NC_004547.2 907498 908973 R Similar to Escherichia coli D-mannonate oxidoreductase UxuB or b4323 SWALL:UXUB_ECOLI (SWALL:P39160) (486 aa) fasta scores: E(): 4.5e-107, 56.03% id in 489 aa, and to Yersinia pestis D-mannonate oxidoreductase ypo1280 or y2903 SWALL:AAM86454 (EMBL:AJ414147) (490 aa) fasta scores: E(): 8.7e-128, 63.93% id in 488 aa. Also similar to ECA0920 (54.906% id. in 479 aa overlap); D-mannonate oxidoreductase complement(907498..908973) Pectobacterium atrosepticum SCRI1043 2882867 YP_048930.1 CDS ECA0820 NC_004547.2 909308 910588 D Similar to Emericella nidulans O-acetyl-L-homoserine sulfhydrylase CysD SWALL:O13387 (EMBL:AF029318) (437 aa) fasta scores: E(): 2.6e-79, 52.47% id in 425 aa, and to Shewanella oneidensis O-acetylhomoserine so1095 SWALL:AAN54166 (EMBL:AE015554) (430 aa) fasta scores: E(): 3.2e-138, 85.21% id in 426 aa; O-acetyl-L-homoserine sulfhydrylase 909308..910588 Pectobacterium atrosepticum SCRI1043 2881218 YP_048931.1 CDS ECA0821 NC_004547.2 910651 911748 R Similar to Salmonella typhimurium, and Salmonella typhi periplasmic protein YbiS or SWALL:Q8XFD8 (EMBL:AE008734) (306 aa) fasta scores: E(): 1.9e-74, 67.64% id in 306 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein YbiS precursor SWALL:YBIS_ECOLI (SWALL:P75789) (306 aa) fasta scores: E(): 2.8e-74, 67.64% id in 306 aa; hypothetical protein complement(910651..911748) Pectobacterium atrosepticum SCRI1043 2881219 YP_048932.1 CDS ECA0822 NC_004547.2 911924 912721 R Similar to Escherichia coli O157:H7 hypothetical protein ybeM SWALL:YBEM_ECO57 (SWALL:P58054) (262 aa) fasta scores: E(): 4.7e-55, 53.25% id in 261 aa; carbon-nitrogen hydrolase complement(911924..912721) Pectobacterium atrosepticum SCRI1043 2881220 YP_048933.1 CDS cybB NC_004547.2 912743 913279 R Similar to Escherichia coli, and Shigella flexneri cytochrome B561 CybB or b1418 or sf1794 SWALL:C561_ECOLI (SWALL:P08732) (176 aa) fasta scores: E(): 2.1e-34, 49.71% id in 177 aa; cytochrome B561 complement(912743..913279) Pectobacterium atrosepticum SCRI1043 2883173 YP_048934.1 CDS ECA0824 NC_004547.2 913553 917086 R Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap); pyruvate-flavodoxin oxidoreductase complement(913553..917086) Pectobacterium atrosepticum SCRI1043 2881431 YP_048935.1 CDS ECA0825 NC_004547.2 917476 917901 D No significant database matches.; hypothetical protein 917476..917901 Pectobacterium atrosepticum SCRI1043 2881432 YP_048936.1 CDS ECA0826 NC_004547.2 918246 918758 D Similar to Pseudomonas aeruginosa probable N-acetyltransferase pa0478 SWALL:Q9I640 (EMBL:AE004485) (158 aa) fasta scores: E(): 1.4e-37, 64.13% id in 145 aa, and to Rhizobium meliloti acetyltransferase protein r00799 SWALL:Q92RQ9 (EMBL:AL591785) (159 aa) fasta scores: E(): 3.2e-34, 57.14% id in 154 aa. Note that there are no significant database matches to enterobacterial species.; GNAT family acetyltransferase 918246..918758 Pectobacterium atrosepticum SCRI1043 2881433 YP_048937.1 CDS ECA0827 NC_004547.2 918802 919428 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri homoserine/homoserine lactone efflux protein RhtB or b3824 or c4746 or z5345 or ecs4754 or sf3902 SWALL:RHTB_ECOLI (SWALL:P27847) (206 aa) fasta scores: E(): 3.9e-19, 34.45% id in 209 aa, and to Shewanella oneidensis transporter, LysE family so0122 SWALL:AAN53209 (EMBL:AE015463) (207 aa) fasta scores: E(): 1.9e-30, 47.8% id in 205 aa. Also similar to ECA4170 (RhtB) (36.019% id. in 211 aa overlap); amino acid efflux protein complement(918802..919428) Pectobacterium atrosepticum SCRI1043 2881925 YP_048938.1 CDS ECA0828 NC_004547.2 919625 920407 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 histidine-binding periplasmic protein precursor HisJ or b2309 or c2851 or z3571 or ecs3193 SWALL:HISJ_ECOLI (SWALL:P39182) (260 aa) fasta scores: E(): 8.9e-35, 38.22% id in 259 aa, and to Pseudomonas aeruginosa periplasmic histidine-binding protein HisJ or pa2923 SWALL:Q9HZS4 (EMBL:AE004718) (261 aa) fasta scores: E(): 2.8e-35, 40.15% id in 259 aa; amino acid-binding periplasmic protein complement(919625..920407) Pectobacterium atrosepticum SCRI1043 2881926 YP_048939.1 CDS ECA0829 NC_004547.2 920665 921243 R No significant database matches.; hypothetical protein complement(920665..921243) Pectobacterium atrosepticum SCRI1043 2881927 YP_048940.1 CDS ECA0830 NC_004547.2 921448 921897 D hypothetical protein 921448..921897 Pectobacterium atrosepticum SCRI1043 2881554 YP_048941.1 CDS ECA0831 NC_004547.2 <921906 >922199 D Partial CDS. Similar to the C-terminal region of Escherichia coli transposase insg for insertion sequence element IS4 InsG or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 1.7e-12, 50% id in 94 aa, and to Insertion sequence IS4 hypothetical 50.4 kDa protein SWALL:AAA61828 (EMBL:M10575) (442 aa) fasta scores: E(): 1.7e-12, 50% id in 94 aa; transposase (partial) <921906..>922199 Pectobacterium atrosepticum SCRI1043 2881555 YP_048942.1 CDS ECA0832 NC_004547.2 <922240 922566 D Partial CDS. Similar to Salmonella typhi phage capsid protein sty4827 SWALL:Q8Z106 (EMBL:AL627283) (286 aa) fasta scores: E(): 0.0011, 35.41% id in 96 aa. No other significant database matches.; phage capsid protein (partial) <922240..922566 Pectobacterium atrosepticum SCRI1043 2881556 YP_048943.1 CDS ECA0833 NC_004547.2 922585 922755 D Similar to Bacteriophage 186 late control gene B protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 1.9e-08, 48.98% id in 49 aa, and to Erwinia amylovora levansucrase regulator RlsB SWALL:Q8VNT8 (EMBL:AJ344351) (61 aa) fasta scores: E(): 2.2e-13, 64.7% id in 51 aa, and to Escherichia coli prophage P2 Ogr protein OgrK or b2082 SWALL:OGRK_ECOLI (SWALL:P37057) (72 aa) fasta scores: E(): 4.7e-08, 53.06% id in 49 aa. Also similar to ECA0414 (41.818% id. in 55 aa overlap), and to ECA3454 (46.000% id. in 50 aa overlap), and to ECA2599 (39.216% id. in 51 aa overlap).; phage regulatory protein 922585..922755 Pectobacterium atrosepticum SCRI1043 2881675 YP_048944.1 CDS ECA0834 NC_004547.2 923068 925512 R Similar to Pseudomonas syringae hypothetical protein pspto4607 SWALL:Q87WE4 (EMBL:AE016872) (819 aa) fasta scores: E(): 1.1e-96, 37.91% id in 807 aa; hypothetical protein complement(923068..925512) Pectobacterium atrosepticum SCRI1043 2881676 YP_048945.1 CDS ECA0835 NC_004547.2 925541 926821 R Similar to Escherichia coli prophage cp4-57 integrase IntA SWALL:INTA_ECOLI (SWALL:P32053) (413 aa) fasta scores: E(): 5.3e-93, 57.76% id in 393 aa, and to Yersinia pestis prophage cp4-57 integrase IntA SWALL:AAM86631 (EMBL:AE013909) (410 aa) fasta scores: E(): 5.3e-145, 92.17% id in 396 aa.; prophage integrase complement(925541..926821) Pectobacterium atrosepticum SCRI1043 2881677 YP_048946.1 CDS smpB NC_004547.2 927358 927840 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(927358..927840) Pectobacterium atrosepticum SCRI1043 2884376 YP_048947.1 CDS ECA0837 NC_004547.2 927996 928442 D Similar to Yersinia pestis hypothetical protein ypo1102 SWALL:Q8ZH13 (EMBL:AJ414146) (144 aa) fasta scores: E(): 2.3e-47, 86.01% id in 143 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YfjG SWALL:AAN44173 (EMBL:D12501) (158 aa) fasta scores: E(): 3.3e-42, 76.55% id in 145 aa; hypothetical protein 927996..928442 Pectobacterium atrosepticum SCRI1043 2882130 YP_048948.2 CDS ECA0838 NC_004547.2 928423 928713 D Similar to Escherichia coli O6 protein YfjF SWALL:AAN81590 (EMBL:AE016764) (102 aa) fasta scores: E(): 1.8e-23, 75% id in 92 aa, and to Escherichia coli protein YfjF SWALL:YFJF_ECOLI (SWALL:P52119) (96 aa) fasta scores: E(): 4.4e-23, 75% id in 92 aa.; hypothetical protein 928423..928713 Pectobacterium atrosepticum SCRI1043 2882131 YP_048949.1 CDS smpA NC_004547.2 928951 929286 R Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri small protein A precursor SmpA or b2617 or c3139 or sf2676 SWALL:SMPA_ECOLI (SWALL:P23089) (113 aa) fasta scores: E(): 1.3e-33, 80% id in 110 aa; hypothetical protein complement(928951..929286) Pectobacterium atrosepticum SCRI1043 2884381 YP_048950.1 CDS recN NC_004547.2 929441 931102 R Similar to Escherichia coli DNA repair protein RecN or RadB or b2616 SWALL:RECN_ECOLI (SWALL:P05824) (553 aa) fasta scores: E(): 2.6e-138, 73.41% id in 553 aa; recombination and repair protein complement(929441..931102) Pectobacterium atrosepticum SCRI1043 2885106 YP_048951.1 CDS ppnK NC_004547.2 931182 932060 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(931182..932060) Pectobacterium atrosepticum SCRI1043 2882729 YP_048952.1 CDS grpE NC_004547.2 932209 932796 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 932209..932796 Pectobacterium atrosepticum SCRI1043 2884045 YP_048953.1 CDS mntH NC_004547.2 933233 934465 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 manganese transport protein MntH or b2392 or c2931 or z3658 or ecs3271 SWALL:MNTH_ECOLI (SWALL:P77145) (412 aa) fasta scores: E(): 4.7e-123, 81.08% id in 407 aa.; manganese transport protein MntH 933233..934465 Pectobacterium atrosepticum SCRI1043 2882946 YP_048954.1 CDS ECA0844 NC_004547.2 934497 934700 R Similar to Yersinia pestis tautomerase ypo3989 SWALL:Q8ZA31 (EMBL:AJ414160) (66 aa) fasta scores: E(): 2.5e-18, 81.81% id in 66 aa, and to Erwinia chrysanthemi hypothetical 8.1 kDa protein in kdgk 5'region SWALL:YKDK_ERWCH (SWALL:P45418) (73 aa) fasta scores: E(): 3.9e-17, 78.12% id in 64 aa; tautomerase complement(934497..934700) Pectobacterium atrosepticum SCRI1043 2882132 YP_048955.1 CDS ECA0845 NC_004547.2 934714 935880 R Similar to Xylella fastidiosa hypothetical protein xf0268 SWALL:Q9PGN0 (EMBL:AE003880) (395 aa) fasta scores: E(): 2.5e-82, 61.69% id in 355 aa, and to Salmonella typhi membrane protein sty4872 SWALL:Q8Z0X3 (EMBL:AL627284) (394 aa) fasta scores: E(): 3.4e-79, 62.78% id in 352 aa, and to Escherichia coli hypothetical protein YjiJ SWALL:YJIJ_ECOLI (SWALL:P39381) (392 aa) fasta scores: E(): 3.8e-75, 58.23% id in 352 aa.; hypothetical protein complement(934714..935880) Pectobacterium atrosepticum SCRI1043 2881311 YP_048956.1 CDS gldA NC_004547.2 936079 937176 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(936079..937176) Pectobacterium atrosepticum SCRI1043 2882434 YP_048957.1 CDS ECA0847 NC_004547.2 937554 938135 D Similar to Yersinia pestis hypothetical protein Ypo3035 SWALL:Q8ZCF6 (EMBL:AJ414155) (198 aa) fasta scores: E(): 6.2e-48, 69.14% id in 188 aa, and to Escherichia coli hypothetical protein YffH SWALL:YFFH_ECOLI (SWALL:P37128) (191 aa) fasta scores: E(): 1.1e-46, 64.48% id in 183 aa; mutT/NUDIX family protein 937554..938135 Pectobacterium atrosepticum SCRI1043 2881312 YP_048958.1 CDS ECA0848 NC_004547.2 938530 939795 D Similar to Agrobacterium radiobacter lactose-binding protein precursor lacE SWALL:LACE_AGRRD (SWALL:P29822) (422 aa) fasta scores: E(): 6e-79, 49.4% id in 417 aa, and to Rhizobium meliloti probable lactose uptake ABC transporter periplasmic solute-binding protein lace or rb0001 or smb21652 SWALL:Q926I0 (EMBL:AL603642) (424 aa) fasta scores: E(): 1.1e-82, 50.97% id in 410 aa; sugar ABC transporter periplasmic-binding protein 938530..939795 Pectobacterium atrosepticum SCRI1043 2881313 YP_048959.1 CDS ECA0849 NC_004547.2 939859 940740 D Similar to Agrobacterium radiobacter lactose transport system permease protein LacF SWALL:LACF_AGRRD (SWALL:P29823) (298 aa) fasta scores: E(): 1.2e-73, 62.54% id in 291 aa, and to Rhizobium meliloti probable lactose uptake ABC transporter permease protein LacF or rb0002 or smb21653 SWALL:Q92XF9 (EMBL:AL603642) (298 aa) fasta scores: E(): 2.1e-74, 65.27% id in 288 aa; sugar ABC transporter permease 939859..940740 Pectobacterium atrosepticum SCRI1043 2881314 YP_048960.1 CDS ECA0850 NC_004547.2 940742 941554 D Similar to Agrobacterium radiobacter lactose transport system permease protein LacG SWALL:LACG_AGRRD (SWALL:P29824) (273 aa) fasta scores: E(): 6.5e-66, 57.46% id in 268 aa, and to Bacillus subtilis L-arabinose transport system permease protein AraQ SWALL:ARAQ_BACSU (SWALL:P94530) (281 aa) fasta scores: E(): 1e-30, 33.94% id in 271 aa; sugar ABC transporter permease 940742..941554 Pectobacterium atrosepticum SCRI1043 2881367 YP_048961.1 CDS ECA0851 NC_004547.2 941591 942676 D Similar to Agrobacterium radiobacter lactose transport ATP-binding protein LacK SWALL:LACK_AGRRD (SWALL:Q01937) (363 aa) fasta scores: E(): 5.5e-66, 56.16% id in 365 aa, and to Yersinia pestis transport ATP-binding protein y3242 SWALL:AAM86792 (EMBL:AE013925) (368 aa) fasta scores: E(): 1.1e-77, 60.94% id in 361 aa; sugar ABC transporter ATP-binding protein 941591..942676 Pectobacterium atrosepticum SCRI1043 2881368 YP_048962.1 CDS ECA0852 NC_004547.2 943025 944548 D Similar to Pseudomonas fluorescens arabinogalactan endo-1,4-beta-galactosidase precursor gala or ganA SWALL:GANA_PSEFL (SWALL:P48841) (376 aa) fasta scores: E(): 1.2e-16, 33.53% id in 325 aa, and to Thermotoga maritima arabinogalactan endo-1,4-beta-galactosidase, tm1201 SWALL:Q9X0S8 (EMBL:AE001777) (606 aa) fasta scores: E(): 1.6e-33, 36.2% id in 348 aa, and to Aspergillus aculeatus arabinogalactan endo-1,4-beta-galactosidase precursor gal1 SWALL:GANA_ASPAC (SWALL:P48842) (350 aa) fasta scores: E(): 2.2e-15, 30.69% id in 329 aa; exported plant proteoglycan hydrolase 943025..944548 Pectobacterium atrosepticum SCRI1043 2881369 YP_048963.1 CDS ECA0853 NC_004547.2 944667 945698 R Similar to Escherichia coli ebg operon repressor EbgR or b3075 SWALL:EBGR_ECOLI (SWALL:P06846) (327 aa) fasta scores: E(): 3.5e-19, 32.71% id in 321 aa, and to Streptococcus thermophilus galactose operon repressor GalR SWALL:GALR_STRTR (SWALL:Q9ZB11) (331 aa) fasta scores: E(): 1.3e-12, 31.42% id in 350 aa; LacI family transcriptional regulator complement(944667..945698) Pectobacterium atrosepticum SCRI1043 2882012 YP_048964.1 CDS ECA0854 NC_004547.2 945835 946629 R Similar to Rhizobium sp. TAL1145 mimosine transporter ATP-binding protein MidC SWALL:Q9EYT0 (EMBL:AF312768) (265 aa) fasta scores: E(): 2.7e-49, 57.55% id in 245 aa, and to Corynebacterium glutamicum ABC-type transporter, ATPase component cgl1330 SWALL:Q8NQU4 (EMBL:AP005278) (250 aa) fasta scores: E(): 1.9e-50, 59.57% id in 235 aa; ABC transporter ATP-binding protein complement(945835..946629) Pectobacterium atrosepticum SCRI1043 2882013 YP_048965.1 CDS ECA0855 NC_004547.2 946671 947612 R Similar to Rhizobium sp. TAL1145 mimosine transporter permease MidB SWALL:Q9EYT1 (EMBL:AF312768) (234 aa) fasta scores: E(): 6.8e-38, 52.52% id in 198 aa, and to Rhizobium meliloti ABC transporter, permease ra1186 or sma2197 SWALL:Q92XQ8 (EMBL:AE007304) (304 aa) fasta scores: E(): 1.8e-46, 46.2% id in 290 aa; ABC transporter permease complement(946671..947612) Pectobacterium atrosepticum SCRI1043 2882014 YP_048966.1 CDS ECA0856 NC_004547.2 947609 948505 R Similar to Rhizobium sp. TAL1145 mimosine-binding periplasmic protein MidA SWALL:Q9EYT2 (EMBL:AF312768) (281 aa) fasta scores: E(): 1.8e-11, 28.07% id in 260 aa, and to Bifidobacterium longum probable solute binding protein of ABC transporter system bl1179 SWALL:AAN24984 (EMBL:AE014742) (354 aa) fasta scores: E(): 5.8e-23, 33.8% id in 281 aa; ABC transporter periplasmic-binding protein complement(947609..948505) Pectobacterium atrosepticum SCRI1043 2881598 YP_048967.1 CDS ECA0858 NC_004547.2 948918 949769 R Similar to Erwinia chrysanthemi beta-glucoside operon antiterminator ArbG SWALL:ARBG_ERWCH (SWALL:P26211) (283 aa) fasta scores: E(): 2.1e-35, 39.05% id in 274 aa, and to Bacillus subtilis transcription antiterminator LicT or n15A SWALL:LICT_BACSU (SWALL:P39805) (277 aa) fasta scores: E(): 4.1e-37, 38.98% id in 277 aa. Also similar to ECA1452 (37.500% id. in 250 aa overlap), and to ECA4389 (36.861% id. in 274 aa overlap), and to ECA1869, ArbG, (38.000% id. in 272 aa overlap); beta-glucoside operon antiterminator complement(948918..949769) Pectobacterium atrosepticum SCRI1043 2881599 YP_048968.1 CDS ECA0859 NC_004547.2 949915 951342 R Similar to Caldocellum saccharolyticum beta-glucosidase A bglA SWALL:BGLS_CALSA (SWALL:P10482) (455 aa) fasta scores: E(): 3.1e-50, 38.13% id in 472 aa, and to Clostridium acetobutylicum beta_glucosidase cap0010 SWALL:Q97TT6 (EMBL:AE001438) (469 aa) fasta scores: E(): 7.2e-116, 57.96% id in 471 aa, and to Escherichia coli 6-phospho-beta-glucosidase BglA or b2901 SWALL:BGLA_ECOLI (SWALL:Q46829) (479 aa) fasta scores: E(): 2.5e-53, 39.42% id in 487 aa; beta-glucosidase complement(949915..951342) Pectobacterium atrosepticum SCRI1043 2881600 YP_048969.1 CDS ECA0860 NC_004547.2 951408 953342 R Similar to Bacillus subtilis PTS system, beta-glucoside-specific IIabc component BglP or N17C SWALL:PTBA_BACSU (SWALL:P40739) (609 aa) fasta scores: E(): 1.1e-61, 39.06% id in 640 aa, and to Escherichia coli PTS system, arbutin-, cellobiose-, and salicin-specific IIabc component ascf or b2715 SWALL:PTDA_ECOLI (SWALL:P24241) (485 aa) fasta scores: E(): 6.6e-58, 38.55% id in 472 aa; PTS system transporter subunit IIABC complement(951408..953342) Pectobacterium atrosepticum SCRI1043 2881601 YP_048970.1 CDS tktA1 NC_004547.2 953644 955638 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(953644..955638) Pectobacterium atrosepticum SCRI1043 2884281 YP_048971.1 CDS talA NC_004547.2 955654 956604 R Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase A complement(955654..956604) Pectobacterium atrosepticum SCRI1043 2884325 YP_048972.1 CDS rpiB NC_004547.2 956803 957261 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(956803..957261) Pectobacterium atrosepticum SCRI1043 2885023 YP_048973.1 CDS ECA0864 NC_004547.2 957605 957808 D No significant database matches.; hypothetical protein 957605..957808 Pectobacterium atrosepticum SCRI1043 2881986 YP_048974.1 CDS ECA0865 NC_004547.2 957805 959187 D Similar to Streptomyces coelicolor transporter protein sco0581 SWALL:Q9RJQ9 (EMBL:AL939106) (455 aa) fasta scores: E(): 2.9e-116, 68.09% id in 442 aa, and to Yersinia pestis integral membrane protein ypo2237 SWALL:Q8ZED7 (EMBL:AJ414151) (436 aa) fasta scores: E(): 3.1e-61, 39.77% id in 435 aa; transporter 957805..959187 Pectobacterium atrosepticum SCRI1043 2881987 YP_048975.1 CDS ECA0866 NC_004547.2 959189 960961 D in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase 959189..960961 Pectobacterium atrosepticum SCRI1043 2881390 YP_048976.1 CDS tpiA NC_004547.2 960958 961737 D Similar to Lactobacillus delbrueckii triosephosphate isomerase TpiA or Tpi SWALL:TPIS_LACDE (SWALL:O32757) (252 aa) fasta scores: E(): 3.7e-20, 33.33% id in 255 aa, and to Streptomyces coelicolor triosephosphate isomerase sco0578 or scf55.02C SWALL:Q9RJR2 (EMBL:AL939106) (259 aa) fasta scores: E(): 1.1e-46, 55.46% id in 247 aa; triosephosphate isomerase 960958..961737 Pectobacterium atrosepticum SCRI1043 2884258 YP_048977.1 CDS ECA0868 NC_004547.2 961754 962581 D Similar to Streptomyces coelicolor conserved hypothetical protein sco0577 SWALL:CAD55267 (EMBL:AL939106) (266 aa) fasta scores: E(): 2.9e-59, 56.87% id in 262 aa, and to Rhizobium meliloti hypothetical protein r01695 SWALL:Q92PP1 (EMBL:AL591788) (274 aa) fasta scores: E(): 1.9e-21, 29.68% id in 256 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein 961754..962581 Pectobacterium atrosepticum SCRI1043 2881391 YP_048978.1 CDS ECA0869 NC_004547.2 962609 963466 D Similar to Streptomyces coelicolor oxidoreductase sco0576 or sc5g5.08C SWALL:Q93RZ4 (EMBL:AL939106) (291 aa) fasta scores: E(): 3e-65, 59.85% id in 284 aa, and to Rhizobium meliloti hypothetical protein rb0334 rb0334 or smb20348 SWALL:Q92WK5 (EMBL:AL603643) (275 aa) fasta scores: E(): 3.8e-35, 39.17% id in 268 aa. Note that there are no significant database matches to enterobacterial species.; hypothetical protein 962609..963466 Pectobacterium atrosepticum SCRI1043 2881392 YP_048979.1 CDS ECA0870 NC_004547.2 963666 964628 D Similar to Yersinia pestis transcriptional regulator y0843 SWALL:AAM84428 (EMBL:AE013687) (332 aa) fasta scores: E(): 8e-99, 83.12% id in 320 aa, and to Klebsiella pneumoniae sorbitol operon regulator SorC SWALL:SORC_KLEPN (SWALL:P37078) (315 aa) fasta scores: E(): 6.1e-16, 30.03% id in 313 aa.; transcriptional regulator 963666..964628 Pectobacterium atrosepticum SCRI1043 2885154 YP_048980.1 CDS maeB NC_004547.2 964883 967162 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 964883..967162 Pectobacterium atrosepticum SCRI1043 2882231 YP_048981.1 CDS mtr NC_004547.2 967560 968834 D tryptophan transporter of high affinity; tryptophan permease 967560..968834 Pectobacterium atrosepticum SCRI1043 2881746 YP_048982.1 CDS ECA0873 NC_004547.2 968913 969365 R Similar to Yersinia pestis hypothetical protein ypo3033 SWALL:YU33_YERPE (SWALL:Q8ZCF8) (152 aa) fasta scores: E(): 1.4e-47, 88.51% id in 148 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YaiI SWALL:YAII_ECOLI (SWALL:P52088) (152 aa) fasta scores: E(): 1.2e-42, 78% id in 150 aa; hypothetical protein complement(968913..969365) Pectobacterium atrosepticum SCRI1043 2885155 YP_048983.1 CDS hemF NC_004547.2 969369 970301 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(969369..970301) Pectobacterium atrosepticum SCRI1043 2885670 YP_048984.1 CDS ECA0875 NC_004547.2 970483 970908 D Similar to Yersinia pestis acetyltransferase ypo3031 SWALL:Q8ZCG0 (EMBL:AJ414155) (141 aa) fasta scores: E(): 1.5e-48, 87.94% id in 141 aa, and to Salmonella typhi acetyltransferase sty2686 SWALL:Q8Z4V0 (EMBL:AL627274) (141 aa) fasta scores: E(): 1.1e-46, 82.27% id in 141 aa.; acetyltransferase 970483..970908 Pectobacterium atrosepticum SCRI1043 2885156 YP_048985.1 CDS iutA NC_004547.2 971015 973210 R Similar to Escherichia coli ferric aerobactin receptor precursor IutA SWALL:IUTA_ECOLI (SWALL:P14542) (732 aa) fasta scores: E(): 0, 75.85% id in 733 aa, and to Shigella boydii IutA SWALL:Q93PE2 (EMBL:AF335540) (732 aa) fasta scores: E(): 0, 75.44% id in 733 aa; TonB-dependent ferric aerobactin receptor complement(971015..973210) Pectobacterium atrosepticum SCRI1043 2881579 YP_048986.1 CDS ECA0877 NC_004547.2 973975 974826 D Similar to Erwinia chrysanthemi TonB protein TonB SWALL:Q9REB0 (EMBL:Y15888) (252 aa) fasta scores: E(): 8.6e-09, 30.12% id in 239 aa, and to Escherichia coli TonB protein TonB or ExbA or b1252 SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 4.7e-08, 33.21% id in 271 aa; TonB-like protein 973975..974826 Pectobacterium atrosepticum SCRI1043 2885157 YP_048987.1 CDS ECA0878 NC_004547.2 974924 977506 D Similar to Escherichia coli hypothetical protein yddb or b1495 SWALL:YDDB_ECOLI (SWALL:P31827) (790 aa) fasta scores: E(): 6.7e-27, 28.16% id in 813 aa, and to Haemophilus influenzae hypothetical protein Hi1369 SWALL:YDDB_HAEIN (SWALL:P45182) (839 aa) fasta scores: E(): 6.1e-19, 24.43% id in 843 aa; hypothetical protein 974924..977506 Pectobacterium atrosepticum SCRI1043 2885099 YP_048988.1 CDS ECA0879 NC_004547.2 977612 980386 D Similar to Escherichia coli probable zinc protease PqqL or b1494 SWALL:PQQL_ECOLI (SWALL:P31828) (931 aa) fasta scores: E(): 1.1e-43, 25.42% id in 948 aa, and to Pasteurella multocida PqqL or pm0804 SWALL:Q9CML5 (EMBL:AE006119) (923 aa) fasta scores: E(): 1.9e-47, 23.52% id in 948 aa; zinc protease 977612..980386 Pectobacterium atrosepticum SCRI1043 2885100 YP_048989.1 CDS ECA0880 NC_004547.2 980392 982056 D Similar to Pasteurella multocida hypothetical protein Pm0041 SWALL:Q9CPJ6 (EMBL:AE006038) (564 aa) fasta scores: E(): 7.9e-99, 48.01% id in 554 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YddA SWALL:YDDA_ECOLI (SWALL:P31826) (561 aa) fasta scores: E(): 5.7e-71, 38.24% id in 536 aa; ABC transporter ATP-binding protein 980392..982056 Pectobacterium atrosepticum SCRI1043 2885101 YP_048990.1 CDS ECA0881 NC_004547.2 982245 982844 D Similar to Yersinia pestis lipoprotein ypo3026 SWALL:Q8ZCG5 (EMBL:AJ414155) (203 aa) fasta scores: E(): 3.1e-41, 57.92% id in 202 aa, and to Salmonella typhi lipoprotein sty2684 SWALL:Q8Z4V2 (EMBL:AL627274) (191 aa) fasta scores: E(): 3.8e-38, 56.31% id in 190 aa; hypothetical protein 982245..982844 Pectobacterium atrosepticum SCRI1043 2885792 YP_048991.1 CDS ECA0882 NC_004547.2 983011 983910 D Similar to Yersinia pestis hypothetical protein ypo3025 SWALL:Q8ZCG6 (EMBL:AJ414155) (299 aa) fasta scores: E(): 1.3e-91, 75.25% id in 299 aa, and to Escherichia coli hypothetical protein YfeX SWALL:YFEX_ECOLI (SWALL:P76536) (299 aa) fasta scores: E(): 3.6e-79, 67.33% id in 300 aa.; hypothetical protein 983011..983910 Pectobacterium atrosepticum SCRI1043 2885793 YP_048992.1 CDS cysP NC_004547.2 984193 985221 D Similar to Escherichia coli thiosulfate-binding protein precursor CysP or b2425 SWALL:CYSP_ECOLI (SWALL:P16700) (338 aa) fasta scores: E(): 1e-102, 79.34% id in 334 aa; thiosulfate transporter subunit 984193..985221 Pectobacterium atrosepticum SCRI1043 2882032 YP_048993.1 CDS cysT NC_004547.2 985221 986075 D Similar to Escherichia coli sulfate transport system permease protein CysT SWALL:CYST_ECOLI (SWALL:P16701) (277 aa) fasta scores: E(): 2.9e-86, 80.95% id in 273 aa; sulfate/thiosulfate transporter subunit 985221..986075 Pectobacterium atrosepticum SCRI1043 2881423 YP_048994.1 CDS cysW NC_004547.2 986075 986968 D Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit 986075..986968 Pectobacterium atrosepticum SCRI1043 2882624 YP_048995.1 CDS cysM NC_004547.2 987143 988024 D catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 987143..988024 Pectobacterium atrosepticum SCRI1043 2883910 YP_048996.1 CDS macB NC_004547.2 988067 990019 R Similar to Escherichia coli macrolide-specific ABC-type efflux carrier MacB or b0879 SWALL:MACB_ECOLI (SWALL:P75831) (648 aa) fasta scores: E(): 7.4e-124, 55.71% id in 648 aa; macrolide-specific ABC-type efflux carrier complement(988067..990019) Pectobacterium atrosepticum SCRI1043 2882230 YP_048997.1 CDS macA NC_004547.2 990023 991219 R Similar to Escherichia coli macrolide-specific efflux protein MacA precursor MacA or b0878 SWALL:MACA_ECOLI (SWALL:P75830) (371 aa) fasta scores: E(): 8.9e-30, 37.17% id in 390 aa, and to Yersinia pestis HlyD family secretion protein ypo2999 or y1481 SWALL:AAM85052 (EMBL:AJ414154) (401 aa) fasta scores: E(): 3.8e-78, 64.69% id in 405 aa; macrolide-specific efflux protein maca complement(990023..991219) Pectobacterium atrosepticum SCRI1043 2882229 YP_048998.1 CDS ECA0889 NC_004547.2 991470 992150 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri transcriptional regulatory protein CpxR or b3912 or z5457 or ecs4838 or sf3991 SWALL:CPXR_ECOLI (SWALL:P16244) (232 aa) fasta scores: E(): 3.5e-31, 44.93% id in 227 aa, and to Yersinia pestis two-component system response regulator ypo2998 or cpxr or y1482 SWALL:Q8ZCI9 (EMBL:AJ414154) (227 aa) fasta scores: E(): 1.3e-67, 77.97% id in 227 aa; two-component system response regulator 991470..992150 Pectobacterium atrosepticum SCRI1043 2885794 YP_048999.1 CDS ECA0890 NC_004547.2 992153 993517 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 sensor protein CpxA or EcfB or Ssd or Eup or b3911 or c4863 or z5456 or ecs4837 SWALL:CPXA_ECOLI (SWALL:P08336) (457 aa) fasta scores: E(): 2.2e-23, 29.53% id in 474 aa, and to Yersinia pestis two-component system sensor kinase ypo2997 or y1483 SWALL:Q8ZCJ0 (EMBL:AJ414154) (449 aa) fasta scores: E(): 1e-91, 56.86% id in 459 aa; two-component system sensor kinase 992153..993517 Pectobacterium atrosepticum SCRI1043 2884593 YP_049000.1 CDS crr NC_004547.2 993584 994093 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter complement(993584..994093) Pectobacterium atrosepticum SCRI1043 2884939 YP_049001.1 CDS ptsI NC_004547.2 994243 995970 R Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase complement(994243..995970) Pectobacterium atrosepticum SCRI1043 2882072 YP_049002.1 CDS ptsH NC_004547.2 996016 996273 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri phosphocarrier protein Hpr or b2415 or c2950 or z3681 or ecs3287 or stm2431 or sty2667 or t0426 or sf2470 SWALL:PTHP_ECOLI (SWALL:P07006) (85 aa) fasta scores: E(): 1e-27, 97.64% id in 85 aa; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr complement(996016..996273) Pectobacterium atrosepticum SCRI1043 2881865 YP_049003.1 CDS cysK NC_004547.2 996727 997695 R CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A complement(996727..997695) Pectobacterium atrosepticum SCRI1043 2883909 YP_049004.1 CDS cysZ NC_004547.2 997858 998685 R role in sulfur assimilation; sulfate transport protein CysZ complement(997858..998685) Pectobacterium atrosepticum SCRI1043 2882625 YP_049005.1 CDS zipA NC_004547.2 998911 999909 D interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 998911..999909 Pectobacterium atrosepticum SCRI1043 2882478 YP_049006.1 CDS asoB NC_004547.2 1000038 1001291 D uncharacterized member of the APC superfamily of amino acid transporters; unknown function; hypothetical protein 1000038..1001291 Pectobacterium atrosepticum SCRI1043 2885588 YP_049007.1 CDS ECA0898 NC_004547.2 1001365 1001658 R Similar to Salmonella typhimurium cytoplasmic protein stm3196 SWALL:Q8ZLY9 (EMBL:AE008847) (119 aa) fasta scores: E(): 1.4e-20, 75.75% id in 99 aa, and to Escherichia coli hypothetical protein yqiC SWALL:YQIC_ECOLI (SWALL:Q46868) (116 aa) fasta scores: E(): 2e-19, 77.66% id in 94 aa; hypothetical protein complement(1001365..1001658) Pectobacterium atrosepticum SCRI1043 2884594 YP_049008.1 CDS ribB NC_004547.2 1002298 1002951 D DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1002298..1002951 Pectobacterium atrosepticum SCRI1043 2884782 YP_049009.1 CDS tehB NC_004547.2 1003036 1003896 R with TehA confers resistance to tellurite; tellurite resistance protein TehB complement(1003036..1003896) Pectobacterium atrosepticum SCRI1043 2884310 YP_049010.1 CDS norW NC_004547.2 1004268 1005407 R catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase complement(1004268..1005407) Pectobacterium atrosepticum SCRI1043 2882047 YP_049011.1 CDS norV NC_004547.2 1005415 1006944 R detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin complement(1005415..1006944) Pectobacterium atrosepticum SCRI1043 2881998 YP_049012.1 CDS norR NC_004547.2 1007112 1008650 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 1007112..1008650 Pectobacterium atrosepticum SCRI1043 2881997 YP_049013.1 CDS fumA NC_004547.2 1008708 1010351 R Similar to Escherichia coli, and Escherichia coli O6 fumarate hydratase class I, aerobic FumA or b1612 or c2004 SWALL:FUMA_ECOLI (SWALL:P00923) (547 aa) fasta scores: E(): 3.1e-189, 85.13% id in 545 aa; class I fumarate hydratase complement(1008708..1010351) Pectobacterium atrosepticum SCRI1043 2883458 YP_049014.1 CDS ECA0905 NC_004547.2 1010800 1011678 R Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo2979 SWALL:Q8ZCK5 (EMBL:AJ414154) (292 aa) fasta scores: E(): 1.7e-70, 64.08% id in 284 aa, and to Salmonella typhi possible regulatory protein sty3165 SWALL:Q8Z3Z7 (EMBL:AL627277) (287 aa) fasta scores: E(): 3.8e-56, 55.35% id in 280 aa.; LysR family transcriptional regulator complement(1010800..1011678) Pectobacterium atrosepticum SCRI1043 2884595 YP_049015.1 CDS ECA0906 NC_004547.2 1011943 1012413 D Similar to Yersinia pestis membrane protein ypo2978 SWALL:AAM85075 (EMBL:AJ414154) (175 aa) fasta scores: E(): 3.9e-37, 60.66% id in 150 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein stm3021 or sty3166 SWALL:Q8XG43 (EMBL:AE008839) (160 aa) fasta scores: E(): 2.2e-33, 60% id in 145 aa.; hypothetical protein 1011943..1012413 Pectobacterium atrosepticum SCRI1043 2884555 YP_049016.1 CDS ECA0907 NC_004547.2 1012423 1013085 R Similar to Schizosaccharomyces pombe DNA-3-methyladenine glycosylase 1 Mag1 or spapb24d3.04C SWALL:MAG1_SCHPO (SWALL:Q92383) (228 aa) fasta scores: E(): 3.5e-33, 43.75% id in 208 aa, and to Pseudomonas putida DNA-3-methyladenine glycosylase pp0705 SWALL:AAN66330 (EMBL:AE016776) (208 aa) fasta scores: E(): 1.7e-39, 51.98% id in 202 aa; DNA-3-methyladenine glycosylase complement(1012423..1013085) Pectobacterium atrosepticum SCRI1043 2884556 YP_049017.1 CDS ada NC_004547.2 1013309 1014424 D Similar to Escherichia coli Ada regulatory protein SWALL:ADA_ECOLI (SWALL:P06134) (354 aa) fasta scores: E(): 2.3e-70, 53.95% id in 341 aa; methylated-DNA--protein-cysteine methyltransferase 1013309..1014424 Pectobacterium atrosepticum SCRI1043 2883938 YP_049018.1 CDS alkB NC_004547.2 1014421 1015077 D Similar to Escherichia coli alkylated DNA repair protein AlkB or AidD or b2212 SWALL:ALKB_ECOLI (SWALL:P05050) (216 aa) fasta scores: E(): 6e-49, 56.94% id in 216 aa; alkylated DNA repair protein 1014421..1015077 Pectobacterium atrosepticum SCRI1043 2884194 YP_049019.1 CDS ECA0910 NC_004547.2 1015307 1016836 R Similar to Shewanella frigidimarina fumarate reductase flavoprotein subunit precursor FccA or Fcc3 SWALL:FRDA_SHEFR (SWALL:Q02469) (596 aa) fasta scores: E(): 1e-20, 27.82% id in 496 aa, and to Shewanella oneidensis fumarate reductase flavoprotein subunit precursor so0970 SWALL:FRDA_SHEON (SWALL:P83223) (596 aa) fasta scores: E(): 1.7e-17, 29.27% id in 485 aa, and to Rhodococcus erythropolis 3-ketosteroid 1-dehydrogenase KstD2 SWALL:Q8RLT5 (EMBL:AY078169) (565 aa) fasta scores: E(): 5e-10, 28.73% id in 341 aa; flavoprotein subunit of a reductase complement(1015307..1016836) Pectobacterium atrosepticum SCRI1043 2884557 YP_049020.1 CDS ECA0911 NC_004547.2 1016948 1017295 R Similar to Fusobacterium nucleatum hypothetical protein Fn0656 SWALL:Q8RFN5 (EMBL:AE010576) (126 aa) fasta scores: E(): 0.065, 32.14% id in 112 aa, and to Methanosarcina acetivorans na+-transporting NADH:ubiquinone oxidoreductase, subunit 3 Nqr3 or ma0661 SWALL:Q8TSY2 (EMBL:AE010727) (188 aa) fasta scores: E(): 5.6, 31.64% id in 79 aa; hypothetical protein complement(1016948..1017295) Pectobacterium atrosepticum SCRI1043 2884565 YP_049021.1 CDS ECA0912 NC_004547.2 1017353 1018729 R Similar to Yersinia pestis membrane transport protein ypo0009 SWALL:Q8ZJS7 (EMBL:AJ414141) (474 aa) fasta scores: E(): 7.2e-49, 33.76% id in 459 aa, and to Escherichia coli hypothetical transport protein YieO SWALL:YIEO_ECOLI (SWALL:P31474) (475 aa) fasta scores: E(): 6.1e-48, 32.59% id in 451 aa.; hypothetical protein complement(1017353..1018729) Pectobacterium atrosepticum SCRI1043 2884566 YP_049022.1 CDS ECA0913 NC_004547.2 1018730 1019692 R Similar to Escherichia coli NfrD protein NrfD or b4073 SWALL:NRFD_ECOLI (SWALL:P32709) (318 aa) fasta scores: E(): 1.4e-56, 50.62% id in 322 aa. Also similar to ECA1878 (50.784% id. in 319 aa overlap); component of polysulfide reductase complement(1018730..1019692) Pectobacterium atrosepticum SCRI1043 2884567 YP_049023.1 CDS ECA0914 NC_004547.2 1019685 1020383 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri NrfC protein precursor nrfc or b4072 or z5671 or ecs5054 or sf4132 SWALL:NRFC_ECOLI (SWALL:P32708) (223 aa) fasta scores: E(): 7.3e-49, 58.66% id in 225 aa. Also similar to ECA1877 (56.444% id. in 225 aa overlap); component of polysulfide reductase complement(1019685..1020383) Pectobacterium atrosepticum SCRI1043 2884568 YP_049024.1 CDS ECA0915 NC_004547.2 1020917 1021882 R Similar to Zymomonas mobilis hypothetical protein SWALL:AAL36115 (EMBL:AY057845) (361 aa) fasta scores: E(): 2.7e-40, 41.21% id in 313 aa, and to Rhodococcus sp heroin esterase Her SWALL:O06441 (EMBL:U70619) (322 aa) fasta scores: E(): 1.1e-07, 36.92% id in 130 aa, and to Pyrobaculum calidifontis esterase pc-Est SWALL:Q8NKS0 (EMBL:AB078331) (313 aa) fasta scores: E(): 1.2e-07, 26.64% id in 274 aa, and to Acetobacter pasteurianus arylesterase Est1 SWALL:O66374 (EMBL:AB012140) (317 aa) fasta scores: E(): 5.9e-06, 26.96% id in 293 aa; hypothetical protein complement(1020917..1021882) Pectobacterium atrosepticum SCRI1043 2883920 YP_049025.1 CDS ECA0916 NC_004547.2 1022284 1023183 D Similar to Listeria innocua transcription activator of glutamate synthase operon GltC SWALL:Q92AS3 (EMBL:AL596170) (295 aa) fasta scores: E(): 8.3e-15, 25.25% id in 293 aa, and to Acinetobacter calcoaceticus ben and cat operon transcriptional regulator BenM SWALL:BENM_ACICA (SWALL:O68014) (304 aa) fasta scores: E(): 1.3e-11, 25% id in 272 aa; LysR family transcriptional regulator 1022284..1023183 Pectobacterium atrosepticum SCRI1043 2883921 YP_049026.1 CDS rspA NC_004547.2 1023335 1024570 D Similar to Escherichia coli starvation sensing protein RspA SWALL:RSPA_ECOLI (SWALL:P38104) (404 aa) fasta scores: E(): 5.7e-163, 92.57% id in 404 aa. Also similar to ECA0189 (36.070% id. in 402 aa overlap); starvation sensing mandelate racemase / muconate lactonizing protein 1023335..1024570 Pectobacterium atrosepticum SCRI1043 2884451 YP_049027.1 CDS rspB NC_004547.2 1024600 1025622 D Similar to Escherichia coli starvation sensing protein RspB or b1580 SWALL:RSPB_ECOLI (SWALL:P38105) (339 aa) fasta scores: E(): 5.6e-94, 73.45% id in 339 aa; dehydrogenase 1024600..1025622 Pectobacterium atrosepticum SCRI1043 2884446 YP_049028.1 CDS ECA0919 NC_004547.2 1026017 1027390 D Similar to Salmonella typhi membrane transport protein sty1554 SWALL:Q8Z6Z5 (EMBL:AL627270) (459 aa) fasta scores: E(): 4e-141, 81.69% id in 448 aa, and to Escherichia coli hypothetical metabolite transport protein YdfJ SWALL:YDFJ_ECOLI (SWALL:P77228) (427 aa) fasta scores: E(): 1.1e-67, 80.09% id in 422 aa; transporter 1026017..1027390 Pectobacterium atrosepticum SCRI1043 2883922 YP_049029.1 CDS ECA0920 NC_004547.2 1027493 1028959 D Similar to Escherichia coli D-mannonate oxidoreductase UxuB or b4323 SWALL:UXUB_ECOLI (SWALL:P39160) (486 aa) fasta scores: E(): 1.5e-102, 54.83% id in 476 aa, and to Escherichia coli hypothetical oxidoreductase ydfi or b1542 SWALL:YDFI_ECOLI (SWALL:P77260) (486 aa) fasta scores: E(): 1.2e-127, 65.26% id in 475 aa. Also similar to ECA0819 (UxuB) (54.906% id. in 479 aa overlap); carbohydrate oxidoreductase 1027493..1028959 Pectobacterium atrosepticum SCRI1043 2883843 YP_049030.1 CDS ECA0921 NC_004547.2 1029050 1029736 D Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical transcriptional regulator YdfH SWALL:YDFH_ECOLI (SWALL:P77577) (228 aa) fasta scores: E(): 2e-51, 60.88% id in 225 aa, and to Salmonella typhimurium, and Salmonella typhi regulatory protein, GntR-family stm1510 or sty1551 SWALL:Q8XFZ6 (EMBL:AE008766) (228 aa) fasta scores: E(): 2.3e-50, 60% id in 225 aa; GntR family transcriptional regulator 1029050..1029736 Pectobacterium atrosepticum SCRI1043 2883844 YP_049031.1 CDS ECA0922 NC_004547.2 1029897 1030829 R Similar to Pseudomonas syringae transcriptional regulator, LusR family pspto1618 SWALL:Q886G1 (EMBL:AE016861) (302 aa) fasta scores: E(): 2e-62, 53.53% id in 297 aa, and to Yersinia pestis transcriptional regulator mlr2579 SWALL:Q93AB4 (EMBL:AF426171) (303 aa) fasta scores: E(): 3.7e-44, 44.33% id in 300 aa; LysR family transcriptional regulator complement(1029897..1030829) Pectobacterium atrosepticum SCRI1043 2883845 YP_049032.1 CDS ECA0923 NC_004547.2 1030959 1031849 D Similar to Synechocystis sp. hypothetical protein slr0317 SWALL:Q55924 (EMBL:D64005) (287 aa) fasta scores: E(): 3.1e-18, 31.95% id in 291 aa, and to Rhizobium loti hypothetical protein mll1871 SWALL:Q98JM9 (EMBL:AP002998) (293 aa) fasta scores: E(): 2.1e-17, 29.49% id in 295 aa, and to Escherichia coli hypothetical protein YtfG SWALL:YTFG_ECOLI (SWALL:P39315) (286 aa) fasta scores: E(): 1.9e-12, 29.23% id in 236 aa.; hypothetical protein 1030959..1031849 Pectobacterium atrosepticum SCRI1043 2883729 YP_049033.1 CDS ECA0924 NC_004547.2 1031988 1033349 R Similar to Shigella flexneri 2a hypothetical 49.1 kDa protein SWALL:Q93F16 (EMBL:AF326777) (452 aa) fasta scores: E(): 1e-107, 62.25% id in 453 aa.; hypothetical protein complement(1031988..1033349) Pectobacterium atrosepticum SCRI1043 2883730 YP_049034.1 CDS ECA0925 NC_004547.2 1033383 1034717 R Similar to Mus musculus schwannoma-associated protein pld3 or sam9 SWALL:O35405 (EMBL:AF026124) (488 aa) fasta scores: E(): 6e-08, 29.31% id in 382 aa, and to Dictyostelium discoideum hypothetical protein SWALL:Q23849 (EMBL:M19469) (372 aa) fasta scores: E(): 5.7e-12, 28.72% id in 376 aa, and to Cowpox virus v043 SWALL:Q8QN20 (EMBL:AF482758) (424 aa) fasta scores: E(): 4e-08, 27.79% id in 367 aa; phospholipase complement(1033383..1034717) Pectobacterium atrosepticum SCRI1043 2883731 YP_049035.1 CDS ECA0926 NC_004547.2 1034710 1035378 R Similar to Plesiomonas shigelloides ExbB SWALL:Q93SS5 (EMBL:AY008342) (269 aa) fasta scores: E(): 5.9e-08, 40.49% id in 121 aa, and to Vibrio vulnificus biopolymer transport protein vv21613 SWALL:AAO08472 (EMBL:AE016813) (230 aa) fasta scores: E(): 9.2e-07, 27.75% id in 209 aa; biopolymer transport protein complement(1034710..1035378) Pectobacterium atrosepticum SCRI1043 2883586 YP_049036.1 CDS ECA0927 NC_004547.2 1035647 1037887 R Similar to Escherichia coli probable TonB-dependent receptor yncd precursor yncd or b1451 SWALL:YNCD_ECOLI (SWALL:P76115) (700 aa) fasta scores: E(): 9e-12, 22.77% id in 751 aa, and to Caulobacter crescentus TonB-dependent receptor cc3436 SWALL:Q9A2X0 (EMBL:AE006003) (800 aa) fasta scores: E(): 4.1e-16, 25.64% id in 772 aa; TonB-dependent receptor complement(1035647..1037887) Pectobacterium atrosepticum SCRI1043 2883587 YP_049037.1 CDS ECA0928 NC_004547.2 1037965 1038714 R Similar to Salmonella typhimurium TonB protein SWALL:TONB_SALTY (SWALL:P25945) (242 aa) fasta scores: E(): 6.8e-09, 35.93% id in 192 aa, and to Escherichia coli TonB protein SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 6.5e-07, 37.91% id in 182 aa.; TonB-like protein complement(1037965..1038714) Pectobacterium atrosepticum SCRI1043 2883588 YP_049038.1 CDS ECA0929 NC_004547.2 1038716 1039117 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri biopolymer transport ExbD protein or b3005 or c3740 or z4358 or ecs3889 or sf3050 SWALL:EXBD_ECOLI (SWALL:P18784) (141 aa) fasta scores: E(): 6.4e-07, 29.85% id in 134 aa, and to Anabaena sp. hypothetical protein All5046 all5046 SWALL:Q8YM90 (EMBL:AP003598) (134 aa) fasta scores: E(): 1.2e-08, 33.58% id in 134 aa; biopolymer transport protein complement(1038716..1039117) Pectobacterium atrosepticum SCRI1043 2883568 YP_049039.1 CDS ECA0930 NC_004547.2 1039456 1040649 R Similar to Salmonella typhimurium permease stm0382 SWALL:Q8ZRF1 (EMBL:AE008713) (403 aa) fasta scores: E(): 4.6e-107, 71.89% id in 395 aa, and to Escherichia coli hypothetical transport protein ycee ycee or b1053 SWALL:YCEE_ECOLI (SWALL:P25744) (408 aa) fasta scores: E(): 2.2e-89, 60.61% id in 391 aa; permease complement(1039456..1040649) Pectobacterium atrosepticum SCRI1043 2883569 YP_049040.1 CDS ECA0931 NC_004547.2 1041218 1043086 R Similar to Xanthomonas campestris xanthomonas compestris avirulence protein precursor SWALL:Q56794 (EMBL:M99059) (617 aa) fasta scores: E(): 3.9e-141, 57.42% id in 613 aa, and to Pectobacterium carotovorum subsp. atrosepticum avirulence protein AvrxcA SWALL:Q9RB04 (EMBL:AJ274642) (97 aa) fasta scores: E(): 1.4e-29, 100% id in 90 aa; avirulence protein complement(1041218..1043086) Pectobacterium atrosepticum SCRI1043 2883570 YP_049041.1 CDS ECA0932 NC_004547.2 1043321 1044637 R Similar to Escherichia coli, and Escherichia coli O6 cytosine permease CodB or b0336 or c0455 SWALL:CODB_ECOLI (SWALL:P25525) (419 aa) fasta scores: E(): 5.8e-25, 28.73% id in 428 aa, and to Streptomyces coelicolor cytosine permease sco0572 or sc5g5.04C SWALL:Q93RZ8 (EMBL:AL939106) (466 aa) fasta scores: E(): 2.4e-55, 40.19% id in 413 aa; permease complement(1043321..1044637) Pectobacterium atrosepticum SCRI1043 2883571 YP_049042.1 CDS ECA0933 NC_004547.2 1044652 1045341 R Similar to Photorhabdus luminescens Orf66 SWALL:AAO17220 (EMBL:AF346500) (227 aa) fasta scores: E(): 8.7e-29, 36.01% id in 211 aa, and to Vibrio cholerae transcriptional regulator, LuxR family vca1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 1.7e-06, 26.63% id in 214 aa; LuxR family transcriptional regulator complement(1044652..1045341) Pectobacterium atrosepticum SCRI1043 2883156 YP_049043.1 CDS ECA0934 NC_004547.2 1045371 1045784 R Similar to Erwinia amylovora orf 12 SWALL:Q46650 (EMBL:L25828) (139 aa) fasta scores: E(): 5.3e-17, 43.7% id in 135 aa, and to Enterobacter aerogenes acetyltransferase Act SWALL:CAD48860 (EMBL:AJ508047) (138 aa) fasta scores: E(): 9.8e-17, 41.91% id in 136 aa, and to Salmonella typhimurium acetyltransferase stm1857 SWALL:Q8ZNY6 (EMBL:AE008782) (139 aa) fasta scores: E(): 4.4e-13, 40.28% id in 139 aa; acetyltransferase complement(1045371..1045784) Pectobacterium atrosepticum SCRI1043 2883157 YP_049044.1 CDS fhuE NC_004547.2 1046527 1048740 D Similar to Escherichia coli FhuE receptor precursor FhuE or b1102 SWALL:FHUE_ECOLI (SWALL:P16869) (729 aa) fasta scores: E(): 1.9e-162, 55.86% id in 725 aa; ferric-rhodotorulic acid outer membrane transporter 1046527..1048740 Pectobacterium atrosepticum SCRI1043 2882278 YP_049045.1 CDS ECA0936 NC_004547.2 1048833 1050182 R Similar to Escherichia coli glucarate dehydratase related protein GudX or b2788 SWALL:GUDX_ECOLI (SWALL:Q46915) (446 aa) fasta scores: E(): 1.4e-101, 55.7% id in 447 aa; glucarate dehydratase complement(1048833..1050182) Pectobacterium atrosepticum SCRI1043 2883158 YP_049046.1 CDS ECA0937 NC_004547.2 1050175 1051521 R Similar to Pseudomonas putida major facilitator family transporter pp4758 SWALL:AAN70328 (EMBL:AE016791) (455 aa) fasta scores: E(): 2.5e-78, 48.75% id in 441 aa, and to Agrobacterium vitis tartrate transporter ttuB SWALL:TUB4_AGRVI (SWALL:Q44470) (433 aa) fasta scores: E(): 3.3e-58, 39.57% id in 427 aa; transporter complement(1050175..1051521) Pectobacterium atrosepticum SCRI1043 2883070 YP_049047.1 CDS ECA0938 NC_004547.2 1051812 1052303 D Similar to Salmonella typhimurium, and Salmonella typhi inner membrane protein ydgk or stm1458 or stm1460 or sty1662 SWALL:Q8XEX0 (EMBL:AE008763) (146 aa) fasta scores: E(): 0.56, 21.67% id in 143 aa.; hypothetical protein 1051812..1052303 Pectobacterium atrosepticum SCRI1043 2883071 YP_049048.1 CDS ECA0939 NC_004547.2 1052370 1052939 R Similar to Xenorhabdus nematophilus fimbrial major subunit MrxA SWALL:Q8KRT4 (EMBL:AF525420) (179 aa) fasta scores: E(): 9.2e-13, 35% id in 180 aa, and to Salmonella typhimurium fimbrial subunit BcfA or stm0021 SWALL:Q9X604 (EMBL:AF130422) (180 aa) fasta scores: E(): 7.3e-10, 30.68% id in 176 aa, and to Escherichia coli PapA SWALL:Q9AM11 (EMBL:AF332519) (159 aa) fasta scores: E(): 6.2e-08, 27.77% id in 162 aa, and to Escherichia coli adhesion protein PapA SWALL:Q9KHX0 (EMBL:AF247355) (171 aa) fasta scores: E(): 4.8e-07, 26.66% id in 150 aa; fimbrial protein complement(1052370..1052939) Pectobacterium atrosepticum SCRI1043 2883072 YP_049049.1 CDS ECA0940 NC_004547.2 1052967 1054001 R Similar to Escherichia coli O6 hypothetical protein c3794 SWALL:AAN82238 (EMBL:AE016766) (349 aa) fasta scores: E(): 8.4e-14, 27.55% id in 352 aa; hypothetical protein complement(1052967..1054001) Pectobacterium atrosepticum SCRI1043 2882996 YP_049050.1 CDS ECA0941 NC_004547.2 1054020 1054769 R Similar to Proteus mirabilis chaperone protein PmfD SWALL:PMFD_PROMI (SWALL:P53520) (254 aa) fasta scores: E(): 8.9e-43, 46.72% id in 229 aa, and to Escherichia coli sfpd SWALL:Q933Y4 (EMBL:AJ131667) (243 aa) fasta scores: E(): 8e-41, 44.93% id in 247 aa, and to Escherichia coli chaperone protein PapD SWALL:PAPD_ECOLI (SWALL:P15319) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa, and to Escherichia coli PrfD SWALL:CAD42028 (EMBL:AJ494981) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa.; fimbrial chaperone complement(1054020..1054769) Pectobacterium atrosepticum SCRI1043 2882997 YP_049051.1 CDS ECA0942 NC_004547.2 1054808 1057300 R Similar to Photorhabdus luminescens MrfC SWALL:Q93MT4 (EMBL:AF396083) (851 aa) fasta scores: E(): 6.4e-137, 43.95% id in 810 aa, and to Proteus mirabilis outer membrane usher protein PmfC precursor pmfC SWALL:PMFC_PROMI (SWALL:P53514) (828 aa) fasta scores: E(): 3e-132, 42.75% id in 807 aa, and to Escherichia coli outer membrane usher protein PapC SWALL:PAPC_ECOLI (SWALL:P07110) (836 aa) fasta scores: E(): 1.6e-126, 43.34% id in 849 aa; outer membrane usher protein complement(1054808..1057300) Pectobacterium atrosepticum SCRI1043 2882998 YP_049052.1 CDS ECA0943 NC_004547.2 1057442 1057990 R Similar to Escherichia coli f15 P-fimbriae major subunit precursor FfiA SWALL:P71218 (EMBL:Y08929) (168 aa) fasta scores: E(): 2.8e-17, 38.5% id in 174 aa, and to Serratia marcescens fimbria A protein precursor SmfA SWALL:FMA_SERMA (SWALL:P13421) (174 aa) fasta scores: E(): 1.3e-16, 39.34% id in 183 aa.; fimbriae major subunit protein complement(1057442..1057990) Pectobacterium atrosepticum SCRI1043 2882983 YP_049053.1 CDS ECA0944 NC_004547.2 1058636 1059439 D Similar to Shigella flexneri orf, partial conserved hypothetical protein sf3508 SWALL:AAN44966 (EMBL:AE015359) (254 aa) fasta scores: E(): 2.7e-06, 31.38% id in 137 aa; hypothetical protein 1058636..1059439 Pectobacterium atrosepticum SCRI1043 2882984 YP_049054.1 CDS ECA0945 NC_004547.2 1059426 1059896 D Similar to Salmonella typhi exported protein FidL or sty4029 SWALL:Q8Z2J0 (EMBL:AL627280) (154 aa) fasta scores: E(): 0.0034, 28.31% id in 113 aa.; hypothetical protein 1059426..1059896 Pectobacterium atrosepticum SCRI1043 2882985 YP_049055.1 CDS ECA0946 NC_004547.2 1059958 1060530 R Similar to Streptomyces coelicolor transcriptional regulator sco5528 SWALL:O86510 (EMBL:AL939124) (200 aa) fasta scores: E(): 1.3e-08, 28.02% id in 182 aa, and to Streptomyces coelicolor TetR-family transcriptional regulator sco6299 SWALL:CAD55507 (EMBL:AL939127) (285 aa) fasta scores: E(): 0.00075, 23.6% id in 161 aa; TetR family transcriptional regulator complement(1059958..1060530) Pectobacterium atrosepticum SCRI1043 2885597 YP_049056.1 CDS ECA0947 NC_004547.2 1060623 1061516 D Similar to Pasteurella multocida hypothetical protein pm0404 SWALL:Q9CNM3 (EMBL:AE006076) (287 aa) fasta scores: E(): 4.7e-57, 54.31% id in 278 aa, and to Neisseria meningitidis integral membrane protein nma1777 SWALL:Q9JTH3 (EMBL:AL162757) (287 aa) fasta scores: E(): 3.8e-55, 52.43% id in 267 aa; hypothetical protein 1060623..1061516 Pectobacterium atrosepticum SCRI1043 2885598 YP_049057.1 CDS ECA0948 NC_004547.2 1061622 1062176 R Similar to Salmonella typhi exported protein sty4152 or t3869 SWALL:Q8Z2B0 (EMBL:AL627281) (179 aa) fasta scores: E(): 3.3e-45, 68.78% id in 173 aa, and to Yersinia pestis exported protein ypo1003 or y3395 SWALL:AAM86945 (EMBL:AJ414145) (195 aa) fasta scores: E(): 6e-43, 68.86% id in 167 aa; hypothetical protein complement(1061622..1062176) Pectobacterium atrosepticum SCRI1043 2885599 YP_049058.1 CDS ECA0949 NC_004547.2 1062410 1063174 R Similar to Xanthomonas axonopodis hypothetical protein xac4298 SWALL:Q8PEP7 (EMBL:AE012083) (259 aa) fasta scores: E(): 3.4e-42, 45.2% id in 250 aa, and to Pseudomonas putida conserved hypothetical protein pp3933 SWALL:AAN69527 (EMBL:AE016788) (253 aa) fasta scores: E(): 3.7e-39, 42.57% id in 249 aa; hypothetical protein complement(1062410..1063174) Pectobacterium atrosepticum SCRI1043 2885600 YP_049059.1 CDS ECA0950 NC_004547.2 1063490 1064089 R Similar to Pseudomonas aeruginosa probable transcriptional regulator pa1226 SWALL:Q9I4B2 (EMBL:AE004552) (202 aa) fasta scores: E(): 1.3e-38, 56.54% id in 191 aa, and to Rhizobium meliloti transcriptional regulator ra0119 SWALL:Q930S6 (EMBL:AE007206) (204 aa) fasta scores: E(): 9.3e-36, 52.88% id in 191 aa.; TetR family transcriptional regulator complement(1063490..1064089) Pectobacterium atrosepticum SCRI1043 2885644 YP_049060.1 CDS ECA0951 NC_004547.2 1064207 1064794 D Similar to Xanthomonas axonopodis NAD(P)H oxidoreductase xac2229 SWALL:Q8PKE6 (EMBL:AE011860) (198 aa) fasta scores: E(): 1.5e-38, 53.88% id in 193 aa, and to Pseudomonas aeruginosa probable NAD(P)H oxidoreductase pa1225 SWALL:Q9I4B3 (EMBL:AE004552) (208 aa) fasta scores: E(): 1.9e-36, 53.6% id in 194 aa; NAD(P)H oxidoreductase 1064207..1064794 Pectobacterium atrosepticum SCRI1043 2885645 YP_049061.1 CDS ECA0952 NC_004547.2 1064820 1064996 D no significant database matches; hypothetical protein 1064820..1064996 Pectobacterium atrosepticum SCRI1043 2885646 YP_049062.1 CDS ECA0953 NC_004547.2 1065060 1065287 D no significant database matches; hypothetical protein 1065060..1065287 Pectobacterium atrosepticum SCRI1043 2882917 YP_049063.1 CDS ECA0954 NC_004547.2 1065851 1066357 R Similar to Pseudomonas syringae acetyltransferase Ttr SWALL:TTR_PSESZ (SWALL:P16966) (177 aa) fasta scores: E(): 1.5e-15, 38.56% id in 153 aa, and to Streptomyces coelicolor acetyltransferase sco6803 or sc1a2.12 SWALL:Q9L229 (EMBL:AL939129) (181 aa) fasta scores: E(): 8.6e-21, 46.75% id in 154 aa; acetyltransferase complement(1065851..1066357) Pectobacterium atrosepticum SCRI1043 2882918 YP_049064.1 CDS ECA0955 NC_004547.2 1066555 1067454 R Similar to Xanthobacter flavus rubisco operon transcriptional regulator CbbR or CfxO SWALL:CBBR_XANFL (SWALL:P25545) (333 aa) fasta scores: E(): 8.9e-19, 30.3% id in 297 aa, and to Agrobacterium tumefaciens transcriptional regulator, LysR family OxyR or atu0873 or agr_c_1597 SWALL:Q8UH12 (EMBL:AE009053) (316 aa) fasta scores: E(): 5.3e-39, 43.88% id in 278 aa; LysR family transcriptional regulator complement(1066555..1067454) Pectobacterium atrosepticum SCRI1043 2882919 YP_049065.1 CDS ECA0956 NC_004547.2 1067553 1068080 D Similar to Salmonella typhimurium YceA protein SWALL:Q8L251 (EMBL:AP005147) (178 aa) fasta scores: E(): 5.6e-45, 60.81% id in 171 aa, and to Agrobacterium tumefaciens acetyltransferase atu0874 or agr_c_1598 SWALL:Q8UH11 (EMBL:AE009053) (206 aa) fasta scores: E(): 1.4e-34, 50.87% id in 171 aa; acetyltransferase 1067553..1068080 Pectobacterium atrosepticum SCRI1043 2882859 YP_049066.1 CDS ECA0957 NC_004547.2 1068077 1069264 D Similar to Bradyrhizobium japonicum MFS permease bll5460 SWALL:BAC50725 (EMBL:AP005955) (416 aa) fasta scores: E(): 2.7e-31, 31.23% id in 397 aa, and to Agrobacterium tumefaciens MFS permease atu0960 or agr_c_1756 SWALL:Q8UGS5 (EMBL:AE009060) (427 aa) fasta scores: E(): 9e-27, 31.8% id in 393 aa; hypothetical protein 1068077..1069264 Pectobacterium atrosepticum SCRI1043 2882860 YP_049067.1 CDS ECA0958 NC_004547.2 1069781 1070074 D Similar to Salmonella typhi hypothetical protein Sty4517 SWALL:Q8Z1M5 (EMBL:AL627282) (97 aa) fasta scores: E(): 3.4e-31, 89.69% id in 97 aa, and to Xanthomonas campestris hypothetical protein Xcc3104 SWALL:Q8P668 (EMBL:AE012426) (96 aa) fasta scores: E(): 2.5e-23, 72.63% id in 95 aa; hypothetical protein 1069781..1070074 Pectobacterium atrosepticum SCRI1043 2882861 YP_049068.1 CDS ECA0959 NC_004547.2 1070142 1070561 D Similar to Salmonella typhi hypothetical protein Sty4668 SWALL:Q8Z1C2 (EMBL:AL627283) (162 aa) fasta scores: E(): 2.2e-45, 89.05% id in 137 aa, and to Salmonella typhimurium acetyltransferase stm4318 SWALL:Q8ZKC6 (EMBL:AE008902) (163 aa) fasta scores: E(): 2.7e-43, 84.28% id in 140 aa; acetyltransferase 1070142..1070561 Pectobacterium atrosepticum SCRI1043 2882351 YP_049069.1 CDS ECA0960 NC_004547.2 1070915 1073521 D Similar to Pseudomonas putida hypothetical protein Pp3692 SWALL:AAN69289 (EMBL:AE016787) (891 aa) fasta scores: E(): 2.6e-122, 40.84% id in 857 aa, and weakly similar to Campylobacter jejuni RloG SWALL:Q8RJJ2 (EMBL:AF486547) (797 aa) fasta scores: E(): 0.034, 20.58% id in 850 aa, and to Campylobacter jejuni RloE SWALL:Q8RN16 (EMBL:AF486555) (800 aa) fasta scores: E(): 0.12, 21.43% id in 849 aa; restriction enzyme 1070915..1073521 Pectobacterium atrosepticum SCRI1043 2882352 YP_049070.1 CDS ccdA2 NC_004547.2 1073966 1074184 R Similar to Escherichia coli, and Escherichia coli O157:H7 ccda protein CcdA or LetA or protein H SWALL:CCDA_ECOLI (SWALL:P05702) (72 aa) fasta scores: E(): 5.2e-11, 50% id in 72 aa, and to Salmonella typhimurium toxin addiction system: antidote ccda or pslt027 SWALL:Q93GR6 (EMBL:AE006471) (72 aa) fasta scores: E(): 1e-10, 48.61% id in 72 aa; plasmid maintenance protein CcdA complement(1073966..1074184) Pectobacterium atrosepticum SCRI1043 2882034 YP_049071.1 CDS ECA0964 NC_004547.2 1074199 1074447 R Similar to Rhizobium loti hypothetical protein Msr0960 SWALL:Q98LM9 (EMBL:AP002996) (83 aa) fasta scores: E(): 2.2e-07, 43.47% id in 69 aa, and to Leptospira interrogans predicted transcriptional regulator la0511 SWALL:AAN47710 (EMBL:AE011237) (98 aa) fasta scores: E(): 1.5e-05, 45.9% id in 61 aa; regulatory protein complement(1074199..1074447) Pectobacterium atrosepticum SCRI1043 2882353 YP_049072.1 CDS ECA0965 NC_004547.2 1074532 1074786 R Similar to Leptospira interrogans predicted transcriptional regulator la2845 SWALL:AAN50044 (EMBL:AE011449) (98 aa) fasta scores: E(): 6.8e-06, 50.82% id in 61 aa, and to Rhizobium loti hypothetical protein Msr0960 msr0960 SWALL:Q98LM9 (EMBL:AP002996) (83 aa) fasta scores: E(): 2.9e-07, 45.45% id in 66 aa; regulatory protein complement(1074532..1074786) Pectobacterium atrosepticum SCRI1043 2885446 YP_049073.1 CDS ECA0966 NC_004547.2 1074890 1075132 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or Sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 4.3e-16, 75% id in 64 aa, and to Salmonella typhi transcriptional regulatory protein CII or sty4673 SWALL:Q8Z1B7 (EMBL:AL627283) (73 aa) fasta scores: E(): 3e-19, 79.41% id in 68 aa. Also similar to ECA0513 (91.139% id. in 79 aa overlap), and to ECA3206 (85.714% id. in 70 aa overlap), and to ECA0686 (72.368% id. in 76 aa overlap.); transcriptional regulator 1074890..1075132 Pectobacterium atrosepticum SCRI1043 2885447 YP_049074.1 CDS speC NC_004547.2 1076168 1078321 D Similar to Escherichia coli ornithine decarboxylase, constitutive SpeC or b2965 SWALL:DCOR_ECOLI (SWALL:P21169) (711 aa) fasta scores: E(): 0, 71.78% id in 716 aa, and to Yersinia pestis ornithine decarboxylase SpeC or ypo0960 or y3347 SWALL:Q8ZHE0 (EMBL:AJ414145) (720 aa) fasta scores: E(): 0, 73.61% id in 720 aa; ornithine decarboxylase 1076168..1078321 Pectobacterium atrosepticum SCRI1043 2884372 YP_049075.1 CDS ECA0968 NC_004547.2 1078381 1079040 R Similar to Streptomyces coelicolor sc10a5.34c protein sco5929 or sc10a5.34C SWALL:O54125 (EMBL:AL939125) (258 aa) fasta scores: E(): 1.7e-24, 38.86% id in 211 aa, and to Halobacterium volcanii oxidoreductase SWALL:O34187 (EMBL:U95375) (255 aa) fasta scores: E(): 4e-08, 28.43% id in 211 aa; short chain dehydrogenase complement(1078381..1079040) Pectobacterium atrosepticum SCRI1043 2885448 YP_049076.1 CDS ECA0969 NC_004547.2 1079199 1079828 R Similar to Yersinia pestis tetr-family regulatory protein ypo3840 or y0390 SWALL:AAM83979 (EMBL:AJ414159) (228 aa) fasta scores: E(): 1.4e-33, 71.36% id in 213 aa, and to Rhizobium loti transcriptional regulator mll3386 SWALL:Q98GC7 (EMBL:AP003001) (219 aa) fasta scores: E(): 3.2e-30, 48.66% id in 187 aa; TetR family transcriptional regulator complement(1079199..1079828) Pectobacterium atrosepticum SCRI1043 2885449 YP_049077.1 CDS ECA0970 NC_004547.2 1080117 1081325 D Similar to Yersinia pestis hypothetical protein ypo3839 or y0391 SWALL:Q8ZAG3 (EMBL:AJ414159) (405 aa) fasta scores: E(): 1.9e-113, 73.98% id in 396 aa, and to Rhizobium sp. hypothetical protein Y4oU precursor SWALL:Y4OU_RHISN (SWALL:P55606) (402 aa) fasta scores: E(): 2.3e-83, 54.61% id in 401 aa; hypothetical protein 1080117..1081325 Pectobacterium atrosepticum SCRI1043 2881699 YP_049078.1 CDS ECA0971 NC_004547.2 1081339 1082172 D Similar to Yersinia pestis hypothetical protein ypo3838 or y0392 SWALL:AAM83981 (EMBL:AJ414159) (280 aa) fasta scores: E(): 1.4e-93, 88.4% id in 276 aa, and to Rhizobium meliloti hypothetical protein ra0728 or sma1332 SWALL:Q92YY4 (EMBL:AE007260) (280 aa) fasta scores: E(): 9.5e-72, 70.07% id in 274 aa; hypothetical protein 1081339..1082172 Pectobacterium atrosepticum SCRI1043 2881700 YP_049079.1 CDS ECA0972 NC_004547.2 1082387 1083430 D Similar to Agrobacterium tumefaciens hypothetical protein atu2436 or agr_c_4418 SWALL:Q8UCP7 (EMBL:AE009191) (348 aa) fasta scores: E(): 3e-52, 43.37% id in 332 aa, and to Caulobacter crescentus hypothetical protein Cc3039 SWALL:Q9A405 (EMBL:AE005966) (335 aa) fasta scores: E(): 5.4e-20, 29.27% id in 345 aa; hypothetical protein 1082387..1083430 Pectobacterium atrosepticum SCRI1043 2881701 YP_049080.1 CDS ECA0973 NC_004547.2 1083393 1084556 R Similar to Agrobacterium tumefaciens transcriptional regulator, AraC family atu0248 or agr_c_425 SWALL:Q8UIP5 (EMBL:AE008997) (365 aa) fasta scores: E(): 3.7e-23, 33.14% id in 353 aa, and to Vibrio cholerae transcriptional regulator, arac/xyls family vca0926 SWALL:Q9KL23 (EMBL:AE004420) (365 aa) fasta scores: E(): 3.5e-16, 33.69% id in 368 aa; AraC family transcriptional regulator complement(1083393..1084556) Pectobacterium atrosepticum SCRI1043 2881265 YP_049081.1 CDS mltC NC_004547.2 1084560 1085633 R Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C complement(1084560..1085633) Pectobacterium atrosepticum SCRI1043 2885531 YP_049082.1 CDS ECA0975 NC_004547.2 1085686 1085958 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri protein yggx or b2962 or z4307 or ecs3838 or sf2959 SWALL:AAN44440 (EMBL:U28377) (91 aa) fasta scores: E(): 1e-29, 87.35% id in 87 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yggx or stm3111 or sty3266 SWALL:Q8XFV6 (EMBL:AE008843) (91 aa) fasta scores: E(): 2.9e-30, 88.5% id in 87 aa; hypothetical protein complement(1085686..1085958) Pectobacterium atrosepticum SCRI1043 2881266 YP_049083.1 CDS mutY NC_004547.2 1085955 1087061 R Similar to Escherichia coli A/G-specific adenine glycosylase MutY or MicA or b2961 SWALL:MUTY_ECOLI (SWALL:P17802) (350 aa) fasta scores: E(): 3.8e-114, 75.64% id in 349 aa, and to Yersinia pestis adenine glycosylase MutY or y3339 SWALL:AAM86889 (EMBL:AE013935) (415 aa) fasta scores: E(): 1.4e-124, 81.42% id in 350 aa; adenine DNA glycosylase complement(1085955..1087061) Pectobacterium atrosepticum SCRI1043 2885295 YP_049084.1 CDS trmB NC_004547.2 1087227 1087946 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1087227..1087946 Pectobacterium atrosepticum SCRI1043 2881267 YP_049085.1 CDS ECA0978 NC_004547.2 1087948 1088292 D Similar to Escherichia coli hypothetical protein yggl or b2959 SWALL:YGGL_ECOLI (SWALL:P38521) (108 aa) fasta scores: E(): 4e-30, 66.66% id in 108 aa, and to Shigella flexneri orf, conserved hypothetical protein yggl or sf2956 SWALL:AAN44437 (EMBL:AE015308) (118 aa) fasta scores: E(): 5e-30, 66.66% id in 108 aa; hypothetical protein 1087948..1088292 Pectobacterium atrosepticum SCRI1043 2881922 YP_049086.1 CDS ECA0979 NC_004547.2 1088407 1089120 D Similar to Salmonella typhimurium periplasmic protein yggn or stm3107 SWALL:Q8ZM42 (EMBL:AE008842) (239 aa) fasta scores: E(): 1.6e-48, 59.41% id in 239 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yggn or b2958 or c3544 or z4303 or ecs3834 SWALL:YGGN_ECOLI (SWALL:P46143) (239 aa) fasta scores: E(): 1.8e-48, 58.99% id in 239 aa; hypothetical protein 1088407..1089120 Pectobacterium atrosepticum SCRI1043 2881923 YP_049087.1 CDS ECA0980 NC_004547.2 1089351 1092461 D Similar to Pseudomonas fluorescens serine protease homologue PspB SWALL:Q9ZNI5 (EMBL:AB015053) (1036 aa) fasta scores: E(): 1.6e-25, 28.66% id in 1106 aa, and to Serratia marcescens extracellular serine protease precursor SWALL:PRTT_SERMA (SWALL:P29805) (1045 aa) fasta scores: E(): 1.1e-16, 25.6% id in 1082 aa; autotransporter 1089351..1092461 Pectobacterium atrosepticum SCRI1043 2881924 YP_049088.1 CDS tas NC_004547.2 1092513 1093574 R complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase complement(1092513..1093574) Pectobacterium atrosepticum SCRI1043 2884320 YP_049089.1 CDS ECA0982 NC_004547.2 1093781 1093990 R Similar to Salmonella typhimurium Pot family, peptide transport protein ygdr or stm3007 SWALL:Q8ZMA7 (EMBL:AE008838) (72 aa) fasta scores: E(): 5.8e-14, 61.11% id in 72 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein ygdr precursor ygdr or b2833 or c3428 or z4151 or ecs3690 or sf2843 SWALL:AAN81873 (EMBL:U29581) (72 aa) fasta scores: E(): 3.6e-13, 59.72% id in 72 aa; lipoprotein complement(1093781..1093990) Pectobacterium atrosepticum SCRI1043 2882148 YP_049090.1 CDS ECA0983 NC_004547.2 1094161 1094877 R Similar to Salmonella typhimurium, and Salmonella typhi integral membrane transport protein ygdq or stm3006 or sty3149 SWALL:Q8XES3 (EMBL:AE008838) (237 aa) fasta scores: E(): 2.2e-73, 80.34% id in 234 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ygdq ygdq or b2832 or c3427 or z4150 or ecs3689 SWALL:YGDQ_ECOLI (SWALL:Q46931) (237 aa) fasta scores: E(): 6.5e-73, 79.48% id in 234 aa; hypothetical protein complement(1094161..1094877) Pectobacterium atrosepticum SCRI1043 2882149 YP_049091.1 CDS mutH NC_004547.2 1095149 1095844 R MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein complement(1095149..1095844) Pectobacterium atrosepticum SCRI1043 2882086 YP_049092.1 CDS nudH NC_004547.2 1096541 1097074 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1096541..1097074 Pectobacterium atrosepticum SCRI1043 2884620 YP_049093.1 CDS ptsP NC_004547.2 1097087 1099333 D member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain 1097087..1099333 Pectobacterium atrosepticum SCRI1043 2881460 YP_049094.1 CDS lgt NC_004547.2 1099537 1100406 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1099537..1100406 Pectobacterium atrosepticum SCRI1043 2883335 YP_049095.1 CDS thyA NC_004547.2 1100443 1101237 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1100443..1101237 Pectobacterium atrosepticum SCRI1043 2884284 YP_049096.1 CDS ppdA NC_004547.2 1101411 1101914 D Similar to Escherichia coli prepilin peptidase dependent protein A precursor PpdA or b2826 SWALL:PPDA_ECOLI (SWALL:P33554) (156 aa) fasta scores: E(): 5.2e-19, 40% id in 150 aa, and to Salmonella typhimurium prepilin peptidase dependent protein a, component in type IVpilin biogenesis ppda or stm3000 SWALL:Q8ZMB0 (EMBL:AE008837) (156 aa) fasta scores: E(): 2.7e-20, 39.35% id in 155 aa; hypothetical protein 1101411..1101914 Pectobacterium atrosepticum SCRI1043 2885576 YP_049097.1 CDS ppdB NC_004547.2 1101908 1102519 D Similar to Escherichia coli prepilin peptidase dependent protein b precursor PpdB or b2825 SWALL:PPDB_ECOLI (SWALL:P08371) (187 aa) fasta scores: E(): 3.4e-15, 27.12% id in 188 aa, and to Yersinia pestis prepilin peptidase dependent protein ypo1015 or y3169 SWALL:Q8ZH93 (EMBL:AJ414146) (202 aa) fasta scores: E(): 6.3e-33, 51.61% id in 186 aa; hypothetical protein 1101908..1102519 Pectobacterium atrosepticum SCRI1043 2882894 YP_049098.1 CDS ECA0991 NC_004547.2 1102516 1102971 D Similar to Yersinia pestis membrane protein ypo1016 or y3168 SWALL:Q8ZH92 (EMBL:AJ414146) (156 aa) fasta scores: E(): 2.3e-18, 43.33% id in 150 aa, and to Salmonella typhi hypothetical protein Sty3136 SWALL:Q8Z415 (EMBL:AL627277) (135 aa) fasta scores: E(): 0.00037, 34.24% id in 146 aa; hypothetical protein 1102516..1102971 Pectobacterium atrosepticum SCRI1043 2882150 YP_049099.1 CDS ppdC NC_004547.2 1102955 1103353 D Similar to Escherichia coli prepilin peptidase dependent protein C precursor PpdC or b2823 SWALL:PPDC_ECOLI (SWALL:P08372) (107 aa) fasta scores: E(): 2.9, 24.32% id in 111 aa, and to Escherichia coli probable general secretion pathway protein i precursor GspI or b3330 SWALL:GSPI_ECOLI (SWALL:P45760) (125 aa) fasta scores: E(): 2.5, 22.4% id in 125 aa; prepilin peptidase dependent protein c 1102955..1103353 Pectobacterium atrosepticum SCRI1043 2882895 YP_049100.1 CDS recC NC_004547.2 1103446 1106844 D catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 1103446..1106844 Pectobacterium atrosepticum SCRI1043 2885059 YP_049101.1 CDS ptrA NC_004547.2 1106941 1109889 D Similar to Escherichia coli protease III precursor PtrA or Ptr or b2821 SWALL:PTRA_ECOLI (SWALL:P05458) (962 aa) fasta scores: E(): 0, 63.68% id in 950 aa, and to Yersinia pestis protease III ptra or ypo1019 or ptr or y3165 SWALL:Q8ZH89 (EMBL:AJ414146) (962 aa) fasta scores: E(): 0, 68.02% id in 960 aa; protease III 1106941..1109889 Pectobacterium atrosepticum SCRI1043 2881868 YP_049102.1 CDS recB NC_004547.2 1109886 1113512 D helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 1109886..1113512 Pectobacterium atrosepticum SCRI1043 2885058 YP_049103.1 CDS recD NC_004547.2 1113509 1115371 D helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 1113509..1115371 Pectobacterium atrosepticum SCRI1043 2885291 YP_049104.1 CDS ECA0997 NC_004547.2 1115454 1116476 R Similar to Salmonella typhi lacI family transcriptional regulator regulator sty4100 SWALL:Q8Z2E7 (EMBL:AL627280) (351 aa) fasta scores: E(): 1.2e-83, 68.69% id in 329 aa, and to Salmonella typhimurium transcriptional regulator stm3696 SWALL:Q8ZL59 (EMBL:AE008871) (334 aa) fasta scores: E(): 1.8e-83, 67.35% id in 340 aa; LacI family transcriptional regulator complement(1115454..1116476) Pectobacterium atrosepticum SCRI1043 2881591 YP_049105.1 CDS ECA0998 NC_004547.2 1116801 1117997 D Similar to Salmonella typhimurium mandelate racemase / muconate lactonizing enzyme family stm3697 SWALL:Q8ZL58 (EMBL:AE008872) (398 aa) fasta scores: E(): 9.9e-148, 92.96% id in 398 aa, and to Pseudomonas putida mandelate racemase mdlA SWALL:MANR_PSEPU (SWALL:P11444) (359 aa) fasta scores: E(): 1.3e-22, 28.32% id in 353 aa; mandelate racemase 1116801..1117997 Pectobacterium atrosepticum SCRI1043 2881592 YP_049106.1 CDS argA NC_004547.2 1118062 1119387 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(1118062..1119387) Pectobacterium atrosepticum SCRI1043 2884143 YP_049107.1 CDS amiC NC_004547.2 1119665 1120909 D Similar to Escherichia coli O6 N-acetylmuramoyl-L-alanine amidase amic precursor AmiC or b2817 or c3411 SWALL:AMIC_ECOLI (SWALL:Q46929) (417 aa) fasta scores: E(): 2.2e-113, 72.46% id in 414 aa, and to Yersinia pestis N-acetylmuramoyl-L-alanine amidase amic ypo1023 SWALL:Q8ZH85 (EMBL:AJ414146) (416 aa) fasta scores: E(): 1.3e-120, 77.31% id in 410 aa; N-acetylmuramoyl-L-alanine amidase 1119665..1120909 Pectobacterium atrosepticum SCRI1043 2884191 YP_049108.1 CDS mltA NC_004547.2 1121679 1122809 D membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 1121679..1122809 Pectobacterium atrosepticum SCRI1043 2885614 YP_049109.1 CDS ECA1002 NC_004547.2 1122906 1123823 R Similar to Escherichia coli, and Shigella flexneri dihydrodipicolinate synthase DapA or b2478 or sf2521 SWALL:DAPA_ECOLI (SWALL:P05640) (292 aa) fasta scores: E(): 2.8e-20, 30.45% id in 289 aa, and to Ralstonia solanacearum dihydrodipicolinate synthase dapa or rsc1145 or rs04756 SWALL:DAPA_RALSO (SWALL:Q8Y099) (294 aa) fasta scores: E(): 2.5e-26, 30.71% id in 280 aa; dihydrodipicolinate synthase complement(1122906..1123823) Pectobacterium atrosepticum SCRI1043 2881593 YP_049110.1 CDS ECA1003 NC_004547.2 1123897 1124589 R Similar to Burkholderia cepacia transcription factor SWALL:Q93L29 (EMBL:AF029344) (246 aa) fasta scores: E(): 1.6e-16, 29.14% id in 223 aa, and to Ralstonia solanacearum transcription regulator protein rsc0538 or rs04928 SWALL:Q8Y1Z9 (EMBL:AL646059) (340 aa) fasta scores: E(): 6.6e-16, 37.01% id in 208 aa; TetR family transcription factor complement(1123897..1124589) Pectobacterium atrosepticum SCRI1043 2881594 YP_049111.1 CDS ECA1004 NC_004547.2 1124593 1125945 R Similar to Campylobacter jejuni hippurate hydrolase HipO or cj0985C SWALL:HIPO_CAMJE (SWALL:P45493) (383 aa) fasta scores: E(): 1.9e-48, 40.41% id in 386 aa, and to Rhizobium meliloti amidohydrolase, similar to hippurate hydrolase protein rb0783 or smb21279 SWALL:Q92VC5 (EMBL:AL603644) (389 aa) fasta scores: E(): 1.9e-65, 49.48% id in 386 aa; hydrolase complement(1124593..1125945) Pectobacterium atrosepticum SCRI1043 2881602 YP_049112.1 CDS ECA1005 NC_004547.2 1125938 1127665 R Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein DfpD or atu6074 or agr_pti_146 SWALL:Q8U661 (EMBL:AE009426) (556 aa) fasta scores: E(): 1.7e-107, 54.13% id in 556 aa, and to Rhizobium meliloti peptide transport system ATP-binding ABC transporter protein r03119 or smc03268 SWALL:Q92LE6 (EMBL:AL591793) (625 aa) fasta scores: E(): 1.3e-93, 48.5% id in 567 aa; ABC transporter ATP-binding protein complement(1125938..1127665) Pectobacterium atrosepticum SCRI1043 2881603 YP_049113.1 CDS ECA1006 NC_004547.2 1127662 1128600 R Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3435 or agr_l_2782 SWALL:Q8UAD9 (EMBL:AE009274) (341 aa) fasta scores: E(): 2.7e-69, 61.92% id in 302 aa, and to Rhizobium meliloti probable ABC transporter, permease protein ra1137 or sma2083 SWALL:Q92XV3 (EMBL:AE007299) (332 aa) fasta scores: E(): 5.3e-66, 65.92% id in 270 aa; ABC transporter permease complement(1127662..1128600) Pectobacterium atrosepticum SCRI1043 2881604 YP_049114.1 CDS ECA1007 NC_004547.2 1128602 1129588 R Similar to Rhizobium meliloti probable ABC transporter, permease protein ra1138 or sma2085 SWALL:Q92XV2 (EMBL:AE007299) (328 aa) fasta scores: E(): 1.3e-81, 66.25% id in 323 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3434 or agr_l_2785 SWALL:Q8UAE0 (EMBL:AE009274) (347 aa) fasta scores: E(): 3.1e-79, 64.92% id in 325 aa; ABC transporter permease complement(1128602..1129588) Pectobacterium atrosepticum SCRI1043 2882154 YP_049115.1 CDS ECA1008 NC_004547.2 1129642 1131228 R Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3433 or agr_l_2786 SWALL:Q8UAE1 (EMBL:AE009273) (585 aa) fasta scores: E(): 1.7e-108, 52.87% id in 522 aa, and to Rhizobium meliloti probable extracellular solute-binding protein, family 5 ra1133 or sma2075 SWALL:Q92XV7 (EMBL:AE007299) (543 aa) fasta scores: E(): 1.6e-100, 49.81% id in 530 aa; ABC transporter substrate binding protein complement(1129642..1131228) Pectobacterium atrosepticum SCRI1043 2882155 YP_049116.1 CDS ECA1009 NC_004547.2 1131750 1134008 D Similar to Rhodobacter sphaeroides biotin sulfoxide reductase SWALL:BISC_RHOSH (SWALL:P54934) (744 aa) fasta scores: E(): 6.3e-130, 48.13% id in 725 aa, and to Escherichia coli biotin sulfoxide reductase bisc or b3551 SWALL:BISC_ECOLI (SWALL:P20099) (777 aa) fasta scores: E(): 8.5e-72, 39.01% id in 751 aa; biotin sulfoxide reductase 1131750..1134008 Pectobacterium atrosepticum SCRI1043 2882156 YP_049117.1 CDS ECA1010 NC_004547.2 1134065 1134883 D Similar to Yersinia pestis hypothetical protein ypo1026 or y3158 SWALL:Q8ZH83 (EMBL:AJ414146) (275 aa) fasta scores: E(): 2.2e-88, 88.72% id in 266 aa, and to Escherichia coli hypothetical protein ygdl or b2812 SWALL:YGDL_ECOLI (SWALL:Q46927) (268 aa) fasta scores: E(): 1.4e-78, 77.81% id in 266 aa; hypothetical protein 1134065..1134883 Pectobacterium atrosepticum SCRI1043 2882142 YP_049118.1 CDS ECA1011 NC_004547.2 1134898 1135353 R Similar to Yersinia pestis hypothetical protein ypo1027 or y3157 SWALL:AAM86707 (EMBL:AJ414146) (147 aa) fasta scores: E(): 1.3e-34, 64.28% id in 140 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ygdk or b2811 or z4128 or ecs3671 SWALL:YGDK_ECOLI (SWALL:Q46926) (147 aa) fasta scores: E(): 2.4e-31, 60.27% id in 146 aa; Fe-S metabolism associated protein complement(1134898..1135353) Pectobacterium atrosepticum SCRI1043 2882143 YP_049119.1 CDS csdA NC_004547.2 1135386 1136591 R Similar to Escherichia coli cysteine sulfinate desulfinase CsdA or b2810 SWALL:CSDA_ECOLI (SWALL:Q46925) (401 aa) fasta scores: E(): 1.6e-104, 69.82% id in 401 aa, and to Salmonella typhimurium selenocysteine lyase csda or stm2984 SWALL:Q8ZMC3 (EMBL:AE008836) (401 aa) fasta scores: E(): 3.2e-101, 67.83% id in 401 aa; cysteine sulfinate desulfinase complement(1135386..1136591) Pectobacterium atrosepticum SCRI1043 2884940 YP_049120.1 CDS ECA1013 NC_004547.2 1136775 1136996 D Similar to Escherichia coli, and Escherichia coli O6 hypothetical lipoprotein ygdi precursor ygdi or b2809 or c3380 SWALL:YGDI_ECOLI (SWALL:Q46924) (75 aa) fasta scores: E(): 1.6e-14, 61.11% id in 72 aa, and to Shigella flexneri orf, conserved hypothetical protein ygdi or sf2823 SWALL:AAN44310 (EMBL:AE015296) (76 aa) fasta scores: E(): 4.2e-14, 59.72% id in 72 aa; lipoprotein 1136775..1136996 Pectobacterium atrosepticum SCRI1043 2882144 YP_049121.1 CDS ECA1014 NC_004547.2 1137042 1137260 R Similar to Saccharomyces cerevisiae hypothetical 11.6 kDa protein in nut1-aro2 intergenic region precursor ygl149w or g1895 SWALL:YGO9_YEAST (SWALL:P53116) (101 aa) fasta scores: E(): 4.7, 37.09% id in 62 aa, and to Streptococcus pyogenes hypothetical protein Spym3_0087 spym3_0087 SWALL:Q8K8V4 (EMBL:AE014138) (102 aa) fasta scores: E(): 4.8, 33.33% id in 60 aa; hypothetical protein complement(1137042..1137260) Pectobacterium atrosepticum SCRI1043 2881293 YP_049122.1 CDS gcvA NC_004547.2 1137533 1138456 D Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 1137533..1138456 Pectobacterium atrosepticum SCRI1043 2882357 YP_049123.1 CDS ECA1016 NC_004547.2 1138546 1138941 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ygdd ygdd or b2807 or c3377 or z4124 or ecs3667 or sf2821 SWALL:AAN44308 (EMBL:X73413) (131 aa) fasta scores: E(): 1.9e-42, 78.62% id in 131 aa, and to Salmonella typhimurium, and Salmonella typhi small membrane protein ygdd or stm2981 or sty3121 SWALL:Q8XEU8 (EMBL:AE008836) (131 aa) fasta scores: E(): 3.7e-41, 75.57% id in 131 aa; hypothetical protein 1138546..1138941 Pectobacterium atrosepticum SCRI1043 2881294 YP_049124.1 CDS ECA1017 NC_004547.2 1138934 1140034 D Similar to Yersinia pestis hypothetical protein ypo1031 or y3152 SWALL:AAM86702 (EMBL:AJ414146) (368 aa) fasta scores: E(): 6.5e-129, 79.17% id in 365 aa, and to Salmonella typhimurium, and Salmonella typhi sam-dependent methyltransferase ygde or stm2980 or sty3120 SWALL:Q8XFI3 (EMBL:AE008836) (366 aa) fasta scores: E(): 5.3e-123, 75.41% id in 366 aa; RNA 2'-O-ribose methyltransferase 1138934..1140034 Pectobacterium atrosepticum SCRI1043 2881295 YP_049125.1 CDS xni NC_004547.2 1140092 1140874 R has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX complement(1140092..1140874) Pectobacterium atrosepticum SCRI1043 2882649 YP_049126.1 CDS ECA1019 NC_004547.2 1140952 1142316 R Similar to Salmonella typhimurium nucleotide binding ygdh or stm2969 SWALL:Q8ZMD2 (EMBL:AE008836) (454 aa) fasta scores: E(): 4.8e-158, 86.78% id in 454 aa, and to Yersinia pestis hypothetical protein ypo1033 or y3148 SWALL:AAM86698 (EMBL:AJ414146) (454 aa) fasta scores: E(): 2e-157, 86.12% id in 454 aa; lysine decarboxylase family protein complement(1140952..1142316) Pectobacterium atrosepticum SCRI1043 2885316 YP_049127.1 CDS queF NC_004547.2 1142628 1143476 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1142628..1143476) Pectobacterium atrosepticum SCRI1043 2885317 YP_049128.1 CDS syd NC_004547.2 1143547 1144095 D SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 1143547..1144095 Pectobacterium atrosepticum SCRI1043 2884328 YP_049129.1 CDS aepA NC_004547.2 1144917 1146593 D Previously sequenced as Erwinia carotovora exoenzymes regulatory protein AepA precursor SWALL:AEPA_ERWCA (SWALL:Q06555) (465 aa) fasta scores: E(): 1.2e-152, 90.28% id in 453 aa; exoenzyme regulatory protein 1144917..1146593 Pectobacterium atrosepticum SCRI1043 2883244 YP_049130.1 CDS ECA1023 NC_004547.2 1146848 1147294 D Similar to Neisseria meningitidis transcriptional regulator, MarR family nmb1585 SWALL:Q9JYH5 (EMBL:AE002509) (143 aa) fasta scores: E(): 1.1e-18, 40.71% id in 140 aa, and to Neisseria meningitidis transcriptional regulator nma1774 SWALL:Q9JTH6 (EMBL:AL162757) (120 aa) fasta scores: E(): 2.4e-15, 45.53% id in 112 aa; MarR family transcriptional regulator 1146848..1147294 Pectobacterium atrosepticum SCRI1043 2885318 YP_049131.1 CDS ECA1024 NC_004547.2 1147386 1147736 D Similar to Yersinia pestis hypothetical protein Ypo1037 SWALL:Q8ZH73 (EMBL:AJ414146) (110 aa) fasta scores: E(): 9.2e-20, 55.04% id in 109 aa, and to Salmonella typhi hypothetical protein yqcc or sty3104 SWALL:Q8Z438 (EMBL:AL627276) (109 aa) fasta scores: E(): 3.6e-15, 45.79% id in 107 aa; hypothetical protein 1147386..1147736 Pectobacterium atrosepticum SCRI1043 2885319 YP_049132.1 CDS ECA1025 NC_004547.2 1147729 1148514 D catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 1147729..1148514 Pectobacterium atrosepticum SCRI1043 2885323 YP_049133.1 CDS ECA1026 NC_004547.2 1148570 1149025 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1148570..1149025 Pectobacterium atrosepticum SCRI1043 2885324 YP_049134.1 CDS ECA1027 NC_004547.2 1149130 1149519 R Similar to Yersinia pestis hypothetical protein ypo1040 or y3141 SWALL:AAM86691 (EMBL:AJ414146) (129 aa) fasta scores: E(): 3.2e-38, 84.49% id in 129 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yaeh or b0163 or c0200 or z0175 or ecs0167 or sf0155 SWALL:AAN41817 (EMBL:D26562) (128 aa) fasta scores: E(): 8.4e-38, 85.82% id in 127 aa; hypothetical protein complement(1149130..1149519) Pectobacterium atrosepticum SCRI1043 2885325 YP_049135.1 CDS dapD NC_004547.2 1149575 1150402 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(1149575..1150402) Pectobacterium atrosepticum SCRI1043 2885274 YP_049136.1 CDS glnD NC_004547.2 1150431 1153145 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(1150431..1153145) Pectobacterium atrosepticum SCRI1043 2881763 YP_049137.1 CDS map NC_004547.2 1153258 1154052 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1153258..1154052) Pectobacterium atrosepticum SCRI1043 2881425 YP_049138.1 CDS rpsB NC_004547.2 1154397 1155122 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1154397..1155122 Pectobacterium atrosepticum SCRI1043 2884478 YP_049139.1 CDS tsf NC_004547.2 1155257 1156108 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1155257..1156108 Pectobacterium atrosepticum SCRI1043 2884230 YP_049140.1 CDS pyrH NC_004547.2 1156279 1157004 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1156279..1157004 Pectobacterium atrosepticum SCRI1043 2882680 YP_049141.1 CDS frr NC_004547.2 1157130 1157687 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1157130..1157687 Pectobacterium atrosepticum SCRI1043 2884872 YP_049142.1 CDS dxr NC_004547.2 1157925 1159121 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1157925..1159121 Pectobacterium atrosepticum SCRI1043 2882098 YP_049143.1 CDS uppS NC_004547.2 1159320 1160081 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri undecaprenyl pyrophosphate synthetase upps or rth or b0174 or c0211 or z0185 or ecs0176 or sf0164 SWALL:UPPS_ECOLI (SWALL:Q47675) (253 aa) fasta scores: E(): 1.7e-79, 77.77% id in 252 aa; undecaprenyl pyrophosphate synthetase 1159320..1160081 Pectobacterium atrosepticum SCRI1043 2882937 YP_049144.1 CDS cdsA NC_004547.2 1160091 1160948 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 1160091..1160948 Pectobacterium atrosepticum SCRI1043 2881833 YP_049145.1 CDS ecfE NC_004547.2 1160970 1162325 D catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 1160970..1162325 Pectobacterium atrosepticum SCRI1043 2881451 YP_049146.1 CDS ecfK NC_004547.2 1162361 1164805 D part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 1162361..1164805 Pectobacterium atrosepticum SCRI1043 2881452 YP_049147.1 CDS ompH NC_004547.2 1164946 1165443 D Similar to Yersinia enterocolitica cationic 19 kDa outer membrane protein precursor OmpH SWALL:OMPH_YEREN (SWALL:P31519) (164 aa) fasta scores: E(): 3.7e-40, 84.24% id in 165 aa, and to Yersinia pestis cationic 19 kDa outer membrane protein precursor OmpH or ypo1053 or y3126 SWALL:OMPH_YERPE (SWALL:P58607) (165 aa) fasta scores: E(): 9.9e-42, 86.06% id in 165 aa; periplasmic chaperone 1164946..1165443 Pectobacterium atrosepticum SCRI1043 2883328 YP_049148.1 CDS lpxD NC_004547.2 1165447 1166469 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1165447..1166469 Pectobacterium atrosepticum SCRI1043 2882790 YP_049149.1 CDS fabZ NC_004547.2 1166572 1167027 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1166572..1167027 Pectobacterium atrosepticum SCRI1043 2883890 YP_049150.1 CDS lpxA NC_004547.2 1167032 1167820 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1167032..1167820 Pectobacterium atrosepticum SCRI1043 2882739 YP_049151.1 CDS lpxB NC_004547.2 1167824 1168975 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1167824..1168975 Pectobacterium atrosepticum SCRI1043 2882740 YP_049152.1 CDS rnhB NC_004547.2 1168997 1169593 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1168997..1169593 Pectobacterium atrosepticum SCRI1043 2885037 YP_049153.1 CDS dnaE NC_004547.2 1169670 1173152 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1169670..1173152 Pectobacterium atrosepticum SCRI1043 2882737 YP_049154.1 CDS accA NC_004547.2 1173165 1174124 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1173165..1174124 Pectobacterium atrosepticum SCRI1043 2885201 YP_049155.1 CDS ECA1048 NC_004547.2 1174256 1174645 D Similar to Escherichia coli hypothetical protein yaer or b0187 SWALL:YAER_ECOLI (SWALL:P52096) (129 aa) fasta scores: E(): 1.2e-37, 71.87% id in 128 aa, and to Shigella flexneri orf, conserved hypothetical protein yaer or sf0177 SWALL:AAN41839 (EMBL:AE015054) (138 aa) fasta scores: E(): 1.3e-37, 71.87% id in 128 aa; hypothetical protein 1174256..1174645 Pectobacterium atrosepticum SCRI1043 2885326 YP_049156.1 CDS tilS NC_004547.2 1174650 1175972 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 1174650..1175972 Pectobacterium atrosepticum SCRI1043 2885722 YP_049157.1 CDS rof NC_004547.2 1176058 1176318 R Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator complement(1176058..1176318) Pectobacterium atrosepticum SCRI1043 2885031 YP_049158.1 CDS ECA1051 NC_004547.2 1176745 1177299 D Similar to Yersinia pestis hypothetical protein Ypo1065 SWALL:Q8ZH46 (EMBL:AJ414146) (182 aa) fasta scores: E(): 2.4e-56, 75.28% id in 178 aa, and to Escherichia coli O6 hypothetical protein yaeq or c0229 SWALL:AAN78721 (EMBL:AE016755) (181 aa) fasta scores: E(): 6e-48, 62.22% id in 180 aa; hypothetical protein 1176745..1177299 Pectobacterium atrosepticum SCRI1043 2885327 YP_049159.1 CDS cutF NC_004547.2 1177368 1178066 D Similar to Escherichia coli copper homeostasis protein CutF precursor or NlpE or b0192 SWALL:CUTF_ECOLI (SWALL:P40710) (236 aa) fasta scores: E(): 8.9e-40, 49.55% id in 224 aa, and to Yersinia pestis copper homeostasis lipoprotein CutF or ypo1067 or y3110 SWALL:AAM86660 (EMBL:AJ414146) (242 aa) fasta scores: E(): 1.5e-46, 53.71% id in 229 aa; copper homeostasis and adhesion lipoprotein 1177368..1178066 Pectobacterium atrosepticum SCRI1043 2883378 YP_049160.1 CDS mutS NC_004547.2 1178139 1180703 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1178139..1180703) Pectobacterium atrosepticum SCRI1043 2881464 YP_049161.1 CDS ECA1054 NC_004547.2 1180862 1182331 D Similar to Escherichia coli prophage cp4-6 integrase IntF or b0281 SWALL:INTF_ECOLI (SWALL:P71298) (466 aa) fasta scores: E(): 0.0029, 24.6% id in 443 aa, and to Xylella fastidiosa phage-related integrase xf0631 SWALL:Q9PFM6 (EMBL:AE003908) (413 aa) fasta scores: E(): 1.2, 24.71% id in 445 aa; integrase 1180862..1182331 Pectobacterium atrosepticum SCRI1043 2885328 YP_049162.1 CDS ECA1055 NC_004547.2 1182391 1182576 D Similar to the N-terminal region of Escherichia coli O6 hypothetical protein c4514 SWALL:AAN82950 (EMBL:AE016769) (594 aa) fasta scores: E(): 4e-11, 70.83% id in 48 aa; hypothetical protein 1182391..1182576 Pectobacterium atrosepticum SCRI1043 2885333 YP_049163.1 CDS ECA1056 NC_004547.2 1182640 1183911 D Similar to Shigella flexneri reverse transcriptase s0042 SWALL:Q9AFX2 (EMBL:AF348706) (405 aa) fasta scores: E(): 0.046, 21.24% id in 353 aa, and to Streptococcus agalactiae prophage lambdasa1, reverse transcriptase/maturase family protein sag0567 SWALL:AAM99468 (EMBL:AE014217) (439 aa) fasta scores: E(): 0.97, 22.78% id in 373 aa; phage-related reverse transcriptase/maturase family protein 1182640..1183911 Pectobacterium atrosepticum SCRI1043 2885334 YP_049164.1 CDS ECA1057 NC_004547.2 1183908 1185917 D Similar to Staphylococcus aureus orf7 protein SWALL:BAC22947 (EMBL:AB057421) (610 aa) fasta scores: E(): 5.2e-08, 23.82% id in 617 aa, and to Lactococcus lactis AbiK abiK SWALL:Q48614 (EMBL:U35629) (599 aa) fasta scores: E(): 0.001, 23.78% id in 454 aa; hypothetical protein 1183908..1185917 Pectobacterium atrosepticum SCRI1043 2885335 YP_049165.1 CDS ECA1058 NC_004547.2 1186181 1186795 D no significant database matches; hypothetical protein 1186181..1186795 Pectobacterium atrosepticum SCRI1043 2885339 YP_049166.1 CDS ECA1059 NC_004547.2 1187197 1188408 D Similar to Escherichia coli O157:H7 site specific recombinase ecs3512 SWALL:Q8X3D8 (EMBL:AP002562) (401 aa) fasta scores: E(): 3.9e-44, 35.44% id in 395 aa, and to Staphylococcus aureus transposase a from transposon tn554 SWALL:TNPA_STAAM (SWALL:P06696) (361 aa) fasta scores: E(): 0.039, 23.1% id in 303 aa; integrase 1187197..1188408 Pectobacterium atrosepticum SCRI1043 2885340 YP_049167.1 CDS ECA1060 NC_004547.2 1188401 1189894 D Similar to Pasteurella multocida hypothetical protein Pm1948 SWALL:Q9CJP6 (EMBL:AE006231) (506 aa) fasta scores: E(): 7.1e-30, 27.86% id in 506 aa, and to Escherichia coli O157:H7 hypothetical protein z3943 or ecs3511 SWALL:Q8X972 (EMBL:AE005493) (441 aa) fasta scores: E(): 6e-29, 28.63% id in 433 aa; integrase 1188401..1189894 Pectobacterium atrosepticum SCRI1043 2885341 YP_049168.1 CDS ECA1061 NC_004547.2 1189894 1191858 D Similar to Escherichia coli O157:H7 hypothetical protein Z3942 SWALL:Q8X403 (EMBL:AE005493) (470 aa) fasta scores: E(): 1.1e-27, 33% id in 506 aa, and to Pasteurella multocida hypothetical protein Pm1947 SWALL:Q9CJP7 (EMBL:AE006231) (678 aa) fasta scores: E(): 2.3e-39, 26.83% id in 641 aa; integrase 1189894..1191858 Pectobacterium atrosepticum SCRI1043 2885387 YP_049169.1 CDS ECA1062 NC_004547.2 1191839 1192258 D Similar to Escherichia coli O157:H7 hypothetical protein Ecs3509 SWALL:Q8X5G1 (EMBL:AP002562) (132 aa) fasta scores: E(): 1.5e-12, 39.84% id in 128 aa, and to Pasteurella multocida hypothetical protein Pm1946 SWALL:Q9CJP8 (EMBL:AE006231) (136 aa) fasta scores: E(): 1.5e-10, 35.07% id in 134 aa; hypothetical protein 1191839..1192258 Pectobacterium atrosepticum SCRI1043 2885388 YP_049170.1 CDS ECA1063 NC_004547.2 1192339 1192806 D Similar to Escherichia coli O157:H7 hypothetical protein z3940 or ecs3508 SWALL:Q8X976 (EMBL:AE005493) (156 aa) fasta scores: E(): 0.0053, 26.66% id in 150 aa; hypothetical protein 1192339..1192806 Pectobacterium atrosepticum SCRI1043 2885389 YP_049171.1 CDS ECA1064 NC_004547.2 1192861 1193283 R no significant database matches; hypothetical protein complement(1192861..1193283) Pectobacterium atrosepticum SCRI1043 2885390 YP_049172.1 CDS ECA1065 NC_004547.2 1193409 1194704 R no significant database matches; hypothetical protein complement(1193409..1194704) Pectobacterium atrosepticum SCRI1043 2885360 YP_049173.1 CDS ECA1066 NC_004547.2 1194710 1195108 R no significant database matches; hypothetical protein complement(1194710..1195108) Pectobacterium atrosepticum SCRI1043 2885361 YP_049174.1 CDS ECA1067 NC_004547.2 1195301 1196644 R Similar to Chromobacterium violaceum hypothetical protein cv0650 SWALL:Q7P0B7 (EMBL:AE016912) (423 aa) fasta scores: E(): 1.3e-22, 38.4% id in 440 aa; hypothetical protein complement(1195301..1196644) Pectobacterium atrosepticum SCRI1043 2885362 YP_049175.1 CDS ECA1068 NC_004547.2 1197376 1198215 D Similar to Yersinia pestis hypothetical y4069 SWALL:AAM87613 (EMBL:AE014008) (195 aa) fasta scores: E(): 2.9e-36, 52.38% id in 189 aa, and to Erwinia pyrifoliae conserved hypothetical membrane protein SWALL:AAN04542 (EMBL:AY123045) (178 aa) fasta scores: E(): 4.6e-18, 37.05% id in 170 aa; hypothetical protein 1197376..1198215 Pectobacterium atrosepticum SCRI1043 2885336 YP_049176.1 CDS ECA1069 NC_004547.2 1198650 1199129 R Similar to Vibrio cholerae hcp=28 kDa secreted hydrophilic protein (HcpA or vca0017) and (Hcp or vc1415) SWALL:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 0.01, 36.64% id in 161 aa, and to Escherichia coli O157:H7 z0248 protein z0248 or ecs0216 SWALL:Q8X7X3 (EMBL:AE005197) (159 aa) fasta scores: E(): 8.6e-31, 52.83% id in 159 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA1076 (49.057% identity in 159aa overlap) and ECA3672 (46.154% identity in 156aa overlap) and ECA0456 (45.912% identity in 159aa overlap).; hypothetical protein complement(1198650..1199129) Pectobacterium atrosepticum SCRI1043 2885337 YP_049177.1 CDS ECA1070 NC_004547.2 1199330 1200754 D Similar to Salmonella typhimurium 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase stm2922 SWALL:Q8ZMG0 (EMBL:AE008833) (475 aa) fasta scores: E(): 1.6e-171, 89.87% id in 474 aa, and to Salmonella typhi hypothetical protein Sty3047 sty3047 SWALL:Q8Z475 (EMBL:AL627276) (475 aa) fasta scores: E(): 4.4e-171, 89.66% id in 474 aa; 3-polyprenyl-4-hydroxybenzoate carboxy-lyase 1199330..1200754 Pectobacterium atrosepticum SCRI1043 2885338 YP_049178.1 CDS ECA1071 NC_004547.2 1200769 1200996 D Similar to Escherichia coli O157:H7 orf, hypothetical protein z4045 or ecs3591 SWALL:Q8X7Z8 (EMBL:AE005501) (78 aa) fasta scores: E(): 7.7e-25, 81.33% id in 75 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein stm2923 or sty3048 SWALL:Q8XEM2 (EMBL:AE008833) (78 aa) fasta scores: E(): 2.1e-24, 78.66% id in 75 aa; hypothetical protein 1200769..1200996 Pectobacterium atrosepticum SCRI1043 2885236 YP_049179.1 CDS ECA1072 NC_004547.2 1201077 1201706 R Similar to Pseudomonas putida glutathione S-transferase family protein pp2474 SWALL:AAN68086 (EMBL:AE016783) (206 aa) fasta scores: E(): 4.5e-48, 60.97% id in 205 aa, and to Vibrio vulnificus glutathione S-transferase vv20508 SWALL:AAO07458 (EMBL:AE016809) (205 aa) fasta scores: E(): 1e-39, 55.39% id in 204 aa; glutathione S-transferase complement(1201077..1201706) Pectobacterium atrosepticum SCRI1043 2885237 YP_049180.1 CDS fecE NC_004547.2 1201900 1202667 R Part of the FecBCDE citrate-dependent iron (III) transport system; iron-dicitrate transporter ATP-binding subunit complement(1201900..1202667) Pectobacterium atrosepticum SCRI1043 2882934 YP_049181.1 CDS fecD NC_004547.2 1202668 1203627 R Ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter), as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter.; iron-dicitrate transporter subunit FecD complement(1202668..1203627) Pectobacterium atrosepticum SCRI1043 2882933 YP_049182.1 CDS fecC NC_004547.2 1203627 1204622 R part of the FecBCDE citrate-dependent iron (III) transport system; iron-dicitrate transporter permease subunit complement(1203627..1204622) Pectobacterium atrosepticum SCRI1043 2882932 YP_049183.1 CDS fecB NC_004547.2 1204619 1205533 R part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+); iron-dicitrate transporter substrate-binding subunit complement(1204619..1205533) Pectobacterium atrosepticum SCRI1043 2885603 YP_049184.1 CDS fecA NC_004547.2 1205607 1207955 R Similar to Escherichia coli iron FecA or b4291 SWALL:FECA_ECOLI (SWALL:P13036) (774 aa) fasta scores: E(): 0, 80.56% id in 782 aa, and to Pseudomonas aeruginosa FecA or pa3901 SWALL:Q9HXB2 (EMBL:AE004807) (784 aa) fasta scores: E(): 1.6e-196, 62.43% id in 788 aa; iron(III) dicitrate transport protein complement(1205607..1207955) Pectobacterium atrosepticum SCRI1043 2885602 YP_049185.1 CDS fecR NC_004547.2 1208167 1209129 R with FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; fec operon regulator FecR complement(1208167..1209129) Pectobacterium atrosepticum SCRI1043 2882722 YP_049186.1 CDS fecI NC_004547.2 1209126 1209647 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport; RNA polymerase sigma factor FecI complement(1209126..1209647) Pectobacterium atrosepticum SCRI1043 2882721 YP_049187.1 CDS ECA1080 NC_004547.2 1209693 1209875 R no significant database matches; hypothetical protein complement(1209693..1209875) Pectobacterium atrosepticum SCRI1043 2885238 YP_049188.1 CDS ECA1081 NC_004547.2 1209940 1211562 D Similar to Escherichia coli O6 hypothetical protein ylab or c0575 SWALL:AAN79053 (EMBL:AE016756) (518 aa) fasta scores: E(): 1.1e-54, 35.17% id in 506 aa, and to Shigella flexneri orf, conserved hypothetical protein sf0402 SWALL:AAN42058 (EMBL:AE015072) (518 aa) fasta scores: E(): 3.2e-53, 34.58% id in 506 aa; transcriptional regulator 1209940..1211562 Pectobacterium atrosepticum SCRI1043 2885226 YP_049189.1 CDS phnA NC_004547.2 1211683 1212024 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PhnA protein or b4108 or c5113 or z5710 or ecs5090 or sf4115 SWALL:PHNA_ECOLI (SWALL:P16680) (111 aa) fasta scores: E(): 1.1e-29, 76.36% id in 110 aa, and to Yersinia pestis hypothetical protein ypo2730 or PhnA or y1563 SWALL:Q8ZD62 (EMBL:AJ414153) (113 aa) fasta scores: E(): 4.9e-33, 79.64% id in 113 aa; phosphonoacetate hydrolase 1211683..1212024 Pectobacterium atrosepticum SCRI1043 2884715 YP_049190.1 CDS mltB NC_004547.2 1212161 1213231 D membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 1212161..1213231 Pectobacterium atrosepticum SCRI1043 2885530 YP_049191.1 CDS ECA1084 NC_004547.2 1213819 1214541 D Similar to Pseudomonas putida membrane protein, pp4663 SWALL:AAN70236 (EMBL:AE016791) (254 aa) fasta scores: E(): 6.2e-44, 56.84% id in 241 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0278 pa0278 SWALL:Q9I6L2 (EMBL:AE004466) (250 aa) fasta scores: E(): 8.1e-44, 55.04% id in 238 aa; hypothetical protein 1213819..1214541 Pectobacterium atrosepticum SCRI1043 2885227 YP_049192.1 CDS ECA1085 NC_004547.2 1214538 1215431 R Similar to Ralstonia solanacearum probable transcription regulator protein rsp1267 or rs05312 SWALL:Q8XQG0 (EMBL:AL646083) (294 aa) fasta scores: E(): 7.6e-52, 47.27% id in 294 aa, and to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1077 SWALL:Q8YB24 (EMBL:AE009740) (294 aa) fasta scores: E(): 2.4e-46, 44.71% id in 293 aa; LysR family transcriptional regulator complement(1214538..1215431) Pectobacterium atrosepticum SCRI1043 2885228 YP_049193.1 CDS ECA1086 NC_004547.2 1215511 1216218 R Similar to the C-terminal regions of several including Pseudomonas aeruginosa hypothetical protein Pa1107 pa1107 SWALL:Q9I4M8 (EMBL:AE004541) (398 aa) fasta scores: E(): 2.1e-17, 39.68% id in 189 aa, and to Xanthomonas axonopodis ggdef family protein xac1939 SWALL:Q8PL67 (EMBL:AE011829) (948 aa) fasta scores: E(): 5.2e-16, 37.43% id in 203 aa; signaling protein complement(1215511..1216218) Pectobacterium atrosepticum SCRI1043 2885222 YP_049194.1 CDS ECA1087 NC_004547.2 1216205 1216657 R Similar to Leptospira interrogans hypothetical protein la1420 SWALL:AAN48619 (EMBL:AE011322) (124 aa) fasta scores: E(): 0.0042, 31.06% id in 132 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0170 SWALL:Q9I6W2 (EMBL:AE004455) (126 aa) fasta scores: E(): 0.048, 30.88% id in 136 aa; lipoprotein complement(1216205..1216657) Pectobacterium atrosepticum SCRI1043 2885223 YP_049195.1 CDS ECA1088 NC_004547.2 1216659 1217213 R Similar to Leptospira interrogans conserved hypothetical protein la1421 SWALL:AAN48620 (EMBL:AE011322) (184 aa) fasta scores: E(): 9.5e-09, 26.94% id in 167 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0171 SWALL:Q9I6W1 (EMBL:AE004455) (180 aa) fasta scores: E(): 2.9e-06, 27.38% id in 168 aa; hypothetical protein complement(1216659..1217213) Pectobacterium atrosepticum SCRI1043 2885224 YP_049196.1 CDS ECA1089 NC_004547.2 1217227 1218471 R Similar to the C terminal regions of Pseudomonas aeruginosa hypothetical protein Pa0172 SWALL:Q9I6W0 (EMBL:AE004455) (663 aa) fasta scores: E(): 8.8e-25, 35.13% id in 259 aa, and to Leptospira interrogans serine/threonine protein kinases la1422 SWALL:AAN48621 (EMBL:AE011322) (1780 aa) fasta scores: E(): 6.6e-23, 29.93% id in 324 aa; hypothetical protein complement(1217227..1218471) Pectobacterium atrosepticum SCRI1043 2885225 YP_049197.1 CDS ECA1090 NC_004547.2 1218826 1220019 R Weakly similar to Thermotoga maritima lipase, tm1350 SWALL:Q9X171 (EMBL:AE001789) (259 aa) fasta scores: E(): 3e-06, 28.31% id in 226 aa, and to Yersinia pestis membrane protein ypo4014 or y4035 SWALL:Q8ZA12 (EMBL:AJ414160) (487 aa) fasta scores: E(): 6.9e-07, 24.4% id in 295 aa; lipoprotein complement(1218826..1220019) Pectobacterium atrosepticum SCRI1043 2885219 YP_049198.1 CDS ECA1092 NC_004547.2 1220231 1220965 D Similar to Escherichia coli uxu operon transcriptional regulator UxuR or b4324 SWALL:UXUR_ECOLI (SWALL:P39161) (257 aa) fasta scores: E(): 2.8e-47, 54.91% id in 244 aa, and to Yersinia pestis transcriptional regulatory protein ypo1279 or UxuR or y2904 SWALL:Q8ZGL0 (EMBL:AJ414147) (266 aa) fasta scores: E(): 1e-67, 71.95% id in 246 aa; GntR family transcriptional regulator 1220231..1220965 Pectobacterium atrosepticum SCRI1043 2885220 YP_049199.1 CDS uxuA NC_004547.2 1221233 1222429 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 1221233..1222429 Pectobacterium atrosepticum SCRI1043 2882866 YP_049200.1 CDS pelI NC_004547.2 1222651 1223694 R Similar to Erwinia carotovora pectate lyase PelB SWALL:Q47471 (EMBL:X79232) (347 aa) fasta scores: E(): 1.3e-129, 93.66% id in 347 aa, and to Erwinia carotovora pectate lyase Pel-3 SWALL:Q47465 (EMBL:L32172) (347 aa) fasta scores: E(): 1.6e-128, 92.5% id in 347 aa, and to Erwinia chrysanthemi endo-pectate lyase precursor PelI SWALL:O50325 (EMBL:Y13340) (344 aa) fasta scores: E(): 6e-87, 64.57% id in 350 aa.; pectate lyase complement(1222651..1223694) Pectobacterium atrosepticum SCRI1043 2885605 YP_049201.1 CDS pehA NC_004547.2 1224544 1225752 D Similar to Erwinia carotovora endo-polygalacturonase precursor PehA SWALL:PGL2_ERWCA (SWALL:P26509) (402 aa) fasta scores: E(): 1.4e-143, 97.76% id in 402 aa, and to Erwinia carotovora Peh precursor SWALL:Q9S5V7 (EMBL:AB022681) (402 aa) fasta scores: E(): 1.3e-140, 95.77% id in 402 aa; endo-polygalacturonase 1224544..1225752 Pectobacterium atrosepticum SCRI1043 2881646 YP_049202.1 CDS ECA1096 NC_004547.2 1225995 1227164 R Similar to Pseudomonas putida protein secretion ABC efflux system, membrane fusion protein pp0803 SWALL:AAN66428 (EMBL:AE016777) (394 aa) fasta scores: E(): 9.1e-67, 54.23% id in 378 aa, and to Escherichia coli O157:H7 membrane spanning export protein z0635 or ecs0544 SWALL:Q8XD11 (EMBL:AE005229) (391 aa) fasta scores: E(): 2.9e-66, 54.3% id in 372 aa; type I secretion protein complement(1225995..1227164) Pectobacterium atrosepticum SCRI1043 2885221 YP_049203.1 CDS ECA1097 NC_004547.2 1227176 1229320 R Similar to Pseudomonas putida protein secretion ABC efflux system, permease and ATP-binding protein pp0804 SWALL:AAN66429 (EMBL:AE016777) (722 aa) fasta scores: E(): 5.9e-111, 46.31% id in 691 aa, and to Salmonella typhi type i secretion protein, ATP-binding protein sty2877 SWALL:Q8Z4H9 (EMBL:AL627276) (718 aa) fasta scores: E(): 1.4e-103, 42.34% id in 692 aa; type I secretion protein, ATP-binding protein complement(1227176..1229320) Pectobacterium atrosepticum SCRI1043 2885216 YP_049204.1 CDS ECA1098 NC_004547.2 1229354 1230796 R Similar to Escherichia coli O157:H7 outer membrane export protein z0608 or ecs0540 SWALL:Q8XD20 (EMBL:AE005228) (451 aa) fasta scores: E(): 2.7e-75, 50.56% id in 439 aa, and to Ralstonia solanacearum outer membrane efflux transmembrane protein rsp1181 or rs06134 SWALL:Q8XQP1 (EMBL:AL646083) (483 aa) fasta scores: E(): 1.9e-23, 29.39% id in 398 aa; type I secretion protein complement(1229354..1230796) Pectobacterium atrosepticum SCRI1043 2885217 YP_049205.1 CDS ECA1099 NC_004547.2 1231301 1242148 R Similar to Salmonella typhi protein sty2875 SWALL:Q8Z4I1 (EMBL:AL627276) (3624 aa) fasta scores: E(): 1.9e-41, 26.46% id in 3438 aa, and to Yersinia pestis autotransporter protein yaph or ypo1004 SWALL:Q8ZHA1 (EMBL:AJ414146) (3705 aa) fasta scores: E(): 8e-31, 23.21% id in 3584 aa; hypothetical protein complement(1231301..1242148) Pectobacterium atrosepticum SCRI1043 2885218 YP_049206.1 CDS ECA1100 NC_004547.2 1242166 1245936 R Similar to Escherichia coli O157:H7 hypothetical protein z0609 or ecs0541 SWALL:Q8XD19 (EMBL:AE005228) (1461 aa) fasta scores: E(): 1.7e-61, 34.15% id in 1253 aa, and to Salmonella typhi proline/threonine-rich protein SWALL:Q9X6M3 (EMBL:AF139831) (1605 aa) fasta scores: E(): 1e-14, 27.68% id in 1239 aa; hypothetical protein complement(1242166..1245936) Pectobacterium atrosepticum SCRI1043 2885213 YP_049207.1 CDS ECA1101 NC_004547.2 1246646 1248292 D efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane component/ATP-binding protein 1246646..1248292 Pectobacterium atrosepticum SCRI1043 2885214 YP_049208.1 CDS ansB1 NC_004547.2 1248508 1249548 D Similar to Erwinia chrysanthemi L-asparaginase precursor AnsB or Asn SWALL:ASPG_ERWCH (SWALL:P06608) (348 aa) fasta scores: E(): 8.8e-95, 77.16% id in 346 aa, and to Salmonella typhimurium L-asparaginase stm3598 SWALL:Q8ZLD3 (EMBL:AE008866) (347 aa) fasta scores: E(): 9.5e-87, 70.23% id in 346 aa; L-asparaginase 1248508..1249548 Pectobacterium atrosepticum SCRI1043 2884179 YP_049209.1 CDS aroL NC_004547.2 1250102 1250623 D type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 1250102..1250623 Pectobacterium atrosepticum SCRI1043 2884127 YP_049210.1 CDS ECA1104 NC_004547.2 1250762 1251046 D Similar to Yersinia pestis hypothetical protein ypo3213 or y0973 SWALL:AAM84554 (EMBL:AJ414155) (95 aa) fasta scores: E(): 8.5e-26, 75.53% id in 94 aa, and to Salmonella typhi hypothetical protein Sty0424 SWALL:Q8Z8Y9 (EMBL:AL627266) (94 aa) fasta scores: E(): 4.3e-24, 73.4% id in 94 aa; hypothetical protein 1250762..1251046 Pectobacterium atrosepticum SCRI1043 2885215 YP_049211.1 CDS ECA1105 NC_004547.2 1251539 1253329 D Similar to Yersinia pestis methyl-accepting chemotaxis protein Tsr2 or ypo1229 SWALL:Q8ZGQ7 (EMBL:AJ414147) (595 aa) fasta scores: E(): 1.4e-120, 62.91% id in 596 aa, and to Ralstonia solanacearum methyl-accepting chemotaxis transmembrane protein rsc0606 or rs06104 SWALL:Q8Y1T3 (EMBL:AL646060) (617 aa) fasta scores: E(): 3.5e-102, 52.42% id in 599 aa; methyl-accepting chemotaxis protein 1251539..1253329 Pectobacterium atrosepticum SCRI1043 2884636 YP_049212.1 CDS rdgC NC_004547.2 1253391 1254320 R Required for efficient pilin antigenic variation; recombination associated protein complement(1253391..1254320) Pectobacterium atrosepticum SCRI1043 2884508 YP_049213.1 CDS ECA1107 NC_004547.2 1254672 1255583 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1254672..1255583 Pectobacterium atrosepticum SCRI1043 2884637 YP_049214.1 CDS sbcC NC_004547.2 1255587 1259270 R Similar to Escherichia coli exonuclease SbcC or RmuA or b0397 SWALL:SBCC_ECOLI (SWALL:P13458) (1048 aa) fasta scores: E(): 2.3e-52, 44.02% id in 1231 aa, and to Yersinia pestis ATP-dependent dsdna exonuclease SbcC or y0976 SWALL:AAM84557 (EMBL:AE013701) (1229 aa) fasta scores: E(): 2e-154, 50.04% id in 1233 aa; exonuclease complement(1255587..1259270) Pectobacterium atrosepticum SCRI1043 2884426 YP_049215.1 CDS sbcD NC_004547.2 1259267 1260493 R with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease SbcD complement(1259267..1260493) Pectobacterium atrosepticum SCRI1043 2884427 YP_049216.1 CDS phoB NC_004547.2 1260789 1261478 D Similar to Escherichia coli, and Escherichia coli O157:H7 phosphate regulon transcriptional regulatory protein PhoB or b0399 or z0497 or ecs0449 SWALL:PHOB_ECOLI (SWALL:P08402) (229 aa) fasta scores: E(): 1.5e-81, 89.08% id in 229 aa, and to Yersinia pestis phosphate regulon transcriptional regulatory protein PhoB or ypo3205 SWALL:Q8ZC21 (EMBL:AJ414155) (229 aa) fasta scores: E(): 1.6e-84, 93.88% id in 229 aa; phosphate regulon response regulator 1260789..1261478 Pectobacterium atrosepticum SCRI1043 2883952 YP_049217.1 CDS phoR NC_004547.2 1261506 1262828 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 1261506..1262828 Pectobacterium atrosepticum SCRI1043 2883717 YP_049218.1 CDS ECA1112 NC_004547.2 1262844 1263782 D Similar to Yersinia pestis phosphate binding protein PstS or ypo3203 or y0980 SWALL:Q8ZC23 (EMBL:AJ414155) (354 aa) fasta scores: E(): 1.9e-76, 68.88% id in 286 aa, and to Pseudomonas aeruginosa phosphate binding protein psts or pa5369 SWALL:Q9Z9M3 (EMBL:AB017492) (323 aa) fasta scores: E(): 1.3e-62, 54.91% id in 295 aa; phosphate binding protein 1262844..1263782 Pectobacterium atrosepticum SCRI1043 2884638 YP_049219.1 CDS ECA1113 NC_004547.2 1264025 1265131 D catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 1264025..1265131 Pectobacterium atrosepticum SCRI1043 2884670 YP_049220.1 CDS brnQ NC_004547.2 1265611 1266930 D Similar to Salmonella typhimurium, and Salmonella typhi branched-chain amino acid transport system II carrier protein BrnQ or stm0399 or sty0435 SWALL:BRNQ_SALTY (SWALL:P14931) (439 aa) fasta scores: E(): 3.3e-125, 77.13% id in 433 aa, and to Yersinia pestis branched-chain amino acid transport system II carrier protein BrnQ or ypo3202 or y0981 SWALL:Q8ZC24 (EMBL:AJ414155) (439 aa) fasta scores: E(): 1.6e-132, 79.49% id in 439 aa; branched-chain amino acid transport system II carrier protein 1265611..1266930 Pectobacterium atrosepticum SCRI1043 2884103 YP_049221.1 CDS proY NC_004547.2 1267070 1268446 D cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; proline-specific permease 1267070..1268446 Pectobacterium atrosepticum SCRI1043 2882460 YP_049222.1 CDS ECA1116 NC_004547.2 1268505 1269779 R Similar to Yersinia pestis membrane protein ypo2470 or y1720 SWALL:Q8ZDT6 (EMBL:AJ414152) (415 aa) fasta scores: E(): 1.4e-108, 66.26% id in 415 aa, and to Salmonella typhi membrane protein sty0618 or ybdg or t2292 SWALL:Q8Z8M7 (EMBL:AL627267) (415 aa) fasta scores: E(): 6.9e-100, 62.71% id in 405 aa; hypothetical protein complement(1268505..1269779) Pectobacterium atrosepticum SCRI1043 2884671 YP_049223.1 CDS ECA1117 NC_004547.2 1269999 1270601 R Similar to Yersinia pestis alkyl hydroperoxide reductase subunit C AhpC or ypo3194 or y0988 SWALL:AAM84569 (EMBL:AJ414155) (200 aa) fasta scores: E(): 2.6e-76, 91.5% id in 200 aa, and to Vibrio vulnificus peroxiredoxin vv10453 SWALL:AAO08975 (EMBL:AE016798) (202 aa) fasta scores: E(): 1.4e-61, 73.5% id in 200 aa; peroxidase complement(1269999..1270601) Pectobacterium atrosepticum SCRI1043 2884672 YP_049224.1 CDS ECA1118 NC_004547.2 1270862 1271443 R Similar to Yersinia pestis hypothetical protein Ypo3193 SWALL:Q8ZC31 (EMBL:AJ414155) (193 aa) fasta scores: E(): 1.5e-53, 70.98% id in 193 aa, and to Escherichia coli hypothetical protein yajb or b0404 SWALL:YAJB_ECOLI (SWALL:P21515) (193 aa) fasta scores: E(): 1.5e-45, 58.54% id in 193 aa; hypothetical protein complement(1270862..1271443) Pectobacterium atrosepticum SCRI1043 2884673 YP_049225.1 CDS queA NC_004547.2 1271755 1272822 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1271755..1272822 Pectobacterium atrosepticum SCRI1043 2882683 YP_049226.1 CDS tgt NC_004547.2 1272920 1274065 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1272920..1274065 Pectobacterium atrosepticum SCRI1043 2884301 YP_049227.1 CDS yajC NC_004547.2 1274175 1274507 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1274175..1274507 Pectobacterium atrosepticum SCRI1043 2884810 YP_049228.1 CDS secD NC_004547.2 1274535 1276382 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1274535..1276382 Pectobacterium atrosepticum SCRI1043 2884413 YP_049229.1 CDS secF NC_004547.2 1276393 1277361 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1276393..1277361 Pectobacterium atrosepticum SCRI1043 2884409 YP_049230.1 CDS ECA1124 NC_004547.2 1277558 1278127 R Similar to Escherichia coli hypothetical lipoprotein yaji precursor yaji or b0412 SWALL:YAJI_ECOLI (SWALL:P46122) (179 aa) fasta scores: E(): 7.9e-16, 34.46% id in 177 aa, and to Salmonella typhimurium outer membrane lipoprotein yaji or stm0414 SWALL:Q8ZRD6 (EMBL:AE008714) (179 aa) fasta scores: E(): 9.1e-16, 34.46% id in 177 aa; hypothetical protein complement(1277558..1278127) Pectobacterium atrosepticum SCRI1043 2884811 YP_049231.1 CDS nrdR NC_004547.2 1278470 1278919 D Similar to Salmonella typhimurium hypothetical protein ybad or stm0415 SWALL:YBAD_SALTY (SWALL:Q8ZRD5) (149 aa) fasta scores: E(): 1.3e-50, 89.26% id in 149 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ybad or b0413 or c0523 or z0514 or ecs0466 SWALL:YBAD_ECOLI (SWALL:P25538) (149 aa) fasta scores: E(): 1.6e-50, 89.26% id in 149 aa; transcriptional regulator NrdR 1278470..1278919 Pectobacterium atrosepticum SCRI1043 2884812 YP_049232.1 CDS ribD NC_004547.2 1278982 1280091 D riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 1278982..1280091 Pectobacterium atrosepticum SCRI1043 2884783 YP_049233.1 CDS ribH NC_004547.2 1280201 1280677 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1280201..1280677 Pectobacterium atrosepticum SCRI1043 2884733 YP_049234.1 CDS nusB NC_004547.2 1280702 1281121 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1280702..1281121 Pectobacterium atrosepticum SCRI1043 2883752 YP_049235.1 CDS thiL NC_004547.2 1281190 1282170 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 1281190..1282170 Pectobacterium atrosepticum SCRI1043 2884294 YP_049236.1 CDS pgpA NC_004547.2 1282175 1282681 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 1282175..1282681 Pectobacterium atrosepticum SCRI1043 2884906 YP_049237.1 CDS dxs NC_004547.2 1282733 1284598 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1282733..1284598) Pectobacterium atrosepticum SCRI1043 2882099 YP_049238.1 CDS ispA NC_004547.2 1284617 1285528 R Similar to Escherichia coli geranyltranstransferase IspA or b0421 SWALL:ISPA_ECOLI (SWALL:P22939) (299 aa) fasta scores: E(): 4.8e-79, 71.76% id in 301 aa; geranyltranstransferase complement(1284617..1285528) Pectobacterium atrosepticum SCRI1043 2881966 YP_049239.1 CDS xseB NC_004547.2 1285525 1285773 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1285525..1285773) Pectobacterium atrosepticum SCRI1043 2882645 YP_049240.1 CDS thiI NC_004547.2 1286027 1287475 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1286027..1287475 Pectobacterium atrosepticum SCRI1043 2884292 YP_049241.1 CDS thiJ NC_004547.2 1287511 1288101 R Similar to Escherichia coli 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme ThiJ or b0424 SWALL:THIJ_ECOLI (SWALL:Q46948) (196 aa) fasta scores: E(): 8.7e-55, 70.91% id in 196 aa; DJ-1 family protein complement(1287511..1288101) Pectobacterium atrosepticum SCRI1043 2884293 YP_049242.1 CDS panE NC_004547.2 1288064 1288972 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(1288064..1288972) Pectobacterium atrosepticum SCRI1043 2881848 YP_049243.1 CDS ECA1137 NC_004547.2 1289161 1289652 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 1289161..1289652 Pectobacterium atrosepticum SCRI1043 2885726 YP_049244.1 CDS ECA1138 NC_004547.2 1289714 1291078 R Similar to Yersinia pestis transporter ypo3169 or y1017 SWALL:AAM84598 (EMBL:AJ414155) (456 aa) fasta scores: E(): 3.6e-130, 78.41% id in 454 aa, and to Escherichia coli O6 hypothetical transport protein yajr or c0538 SWALL:AAN79016 (EMBL:AE016756) (520 aa) fasta scores: E(): 2.3e-119, 71.58% id in 454 aa; transporter complement(1289714..1291078) Pectobacterium atrosepticum SCRI1043 2885727 YP_049245.1 CDS cyoE NC_004547.2 1291267 1292157 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(1291267..1292157) Pectobacterium atrosepticum SCRI1043 2882871 YP_049246.1 CDS cyoD NC_004547.2 1292172 1292504 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri cytochrome o ubiquinol oxidase protein CyoD or b0429 or z0532 or ecs0483 or sf0370 SWALL:CYOD_ECOLI (SWALL:P18403) (109 aa) fasta scores: E(): 5.7e-26, 67.27% id in 110 aa; cytochrome o ubiquinol oxidase subunit IV complement(1292172..1292504) Pectobacterium atrosepticum SCRI1043 2882870 YP_049247.1 CDS cyoC NC_004547.2 1292505 1293119 R Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome o ubiquinol oxidase subunit iii CyoC or b0430 or c0541 or sf0371 SWALL:CYOC_ECOLI (SWALL:P18402) (204 aa) fasta scores: E(): 2.7e-67, 78.53% id in 205 aa; cytochrome o ubiquinol oxidase subunit III complement(1292505..1293119) Pectobacterium atrosepticum SCRI1043 2882869 YP_049248.1 CDS cyoB NC_004547.2 1293109 1295100 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ubiquinol oxidase polypeptide I CyoB or b0431 or c0542 or z0534 or ecs0485 SWALL:CYOB_ECOLI (SWALL:P18401) (663 aa) fasta scores: E(): 0, 82.95% id in 663 aa; cytochrome O ubiquinol oxidase subunit I complement(1293109..1295100) Pectobacterium atrosepticum SCRI1043 2883044 YP_049249.1 CDS cyoA NC_004547.2 1295105 1296067 R Similar to Escherichia coli, and Escherichia coli O6 ubiquinol oxidase polypeptide ii precursor CyoA or b0432 or c0543 SWALL:CYOA_ECOLI (SWALL:P18400) (315 aa) fasta scores: E(): 2.4e-82, 67.18% id in 320 aa; cytochrome o ubiquinol oxidase subunit II complement(1295105..1296067) Pectobacterium atrosepticum SCRI1043 2883043 YP_049250.1 CDS ampG NC_004547.2 1296492 1297979 R in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter complement(1296492..1297979) Pectobacterium atrosepticum SCRI1043 2884182 YP_049251.1 CDS ECA1145 NC_004547.2 1298039 1298617 R Similar to Yersinia pestis lipoprotein ypo3161 or y1024 SWALL:AAM84605 (EMBL:AJ414155) (192 aa) fasta scores: E(): 7.8e-54, 80.2% id in 192 aa, and to Salmonella typhi lipoprotein sty0487 SWALL:Q8Z8V2 (EMBL:AL627266) (192 aa) fasta scores: E(): 2.3e-47, 68.75% id in 192 aa; hypothetical protein complement(1298039..1298617) Pectobacterium atrosepticum SCRI1043 2885728 YP_049252.1 CDS bolA NC_004547.2 1298919 1299233 D positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 1298919..1299233 Pectobacterium atrosepticum SCRI1043 2884101 YP_049253.1 CDS tig NC_004547.2 1299536 1300840 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1299536..1300840 Pectobacterium atrosepticum SCRI1043 2884279 YP_049254.1 CDS clpP NC_004547.2 1301367 1301990 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1301367..1301990 Pectobacterium atrosepticum SCRI1043 2884959 YP_049255.1 CDS clpX NC_004547.2 1302154 1303428 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1302154..1303428 Pectobacterium atrosepticum SCRI1043 2884960 YP_049256.1 CDS lon NC_004547.2 1303620 1306001 D Similar to Escherichia coli, and Escherichia coli O6 ATP-dependent protease La Lon or CapR or Deg or Muc or LopA or b0439 or c0555 SWALL:LON_ECOLI (SWALL:P08177) (784 aa) fasta scores: E(): 0, 92.83% id in 782 aa; DNA-binding ATP-dependent protease La 1303620..1306001 Pectobacterium atrosepticum SCRI1043 2885569 YP_049257.1 CDS hupB NC_004547.2 1306200 1306472 D histone-like DNA-binding protein; transcriptional regulator HU subunit beta 1306200..1306472 Pectobacterium atrosepticum SCRI1043 2883725 YP_049258.1 CDS ppiD NC_004547.2 1306869 1308749 D Similar to Escherichia coli, and Escherichia coli O6 peptidyl-prolyl cis-trans isomerase D PpiD or b0441 or c0557 SWALL:PPID_ECOLI (SWALL:P77241) (623 aa) fasta scores: E(): 7.8e-123, 57.5% id in 626 aa; peptidyl-prolyl cis-trans isomerase 1306869..1308749 Pectobacterium atrosepticum SCRI1043 2882727 YP_049259.1 CDS ECA1153 NC_004547.2 1308888 1309253 D Similar to Salmonella typhimurium, and Salmonella typhi DNA uptake protein and related dna-binding proteins ybav or stm0453 or sty0495 SWALL:Q8XGV0 (EMBL:AE008716) (124 aa) fasta scores: E(): 5.3e-15, 48.78% id in 123 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein ybav precursor ybav or b0442 or sf0387 SWALL:AAN42043 (EMBL:AE000150) (123 aa) fasta scores: E(): 2.8e-13, 49.19% id in 124 aa; hypothetical protein 1308888..1309253 Pectobacterium atrosepticum SCRI1043 2885759 YP_049260.1 CDS ECA1154 NC_004547.2 1309374 1309772 D Similar to Yersinia pestis hypothetical protein Ypo3151 ypo3151 SWALL:Q8ZC71 (EMBL:AJ414155) (135 aa) fasta scores: E(): 1.5e-32, 65.38% id in 130 aa, and to Yersinia pestis hypothetical protein y1033 SWALL:AAM84614 (EMBL:AE013707) (141 aa) fasta scores: E(): 1.5e-32, 65.38% id in 130 aa; thioesterase 1309374..1309772 Pectobacterium atrosepticum SCRI1043 2885760 YP_049261.1 CDS ECA1155 NC_004547.2 1309849 1310544 R YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC complement(1309849..1310544) Pectobacterium atrosepticum SCRI1043 2885761 YP_049262.1 CDS ECA1156 NC_004547.2 1310685 1311761 R Similar to Yersinia pestis pyridoxal-phosphate dependent protein ypo3147 or y1037 SWALL:Q8ZC75 (EMBL:AJ414155) (346 aa) fasta scores: E(): 1.4e-117, 83.47% id in 345 aa, and to Salmonella typhimurium cysteine synthase/cystathionine beta-synthase stm0458 SWALL:Q8ZRB5 (EMBL:AE008717) (351 aa) fasta scores: E(): 1.6e-105, 76.38% id in 343 aa; pyridoxal-phosphate dependent protein complement(1310685..1311761) Pectobacterium atrosepticum SCRI1043 2883914 YP_049263.1 CDS ECA1157 NC_004547.2 1312030 1312560 D Similar to Yersinia pestis probable asnc-family regulatory protein ypo3146 or y1038 SWALL:AAM84619 (EMBL:AJ414155) (153 aa) fasta scores: E(): 1.1e-48, 80.13% id in 151 aa, and to Salmonella typhimurium, and Salmonella typhi transcriptional regulator ybao or stm0459 or sty0502 SWALL:Q8XGC9 (EMBL:AE008717) (152 aa) fasta scores: E(): 8.9e-47, 78.14% id in 151 aa; transcriptional regulator AsnC 1312030..1312560 Pectobacterium atrosepticum SCRI1043 2883915 YP_049264.1 CDS mdlA NC_004547.2 1312639 1314408 D Similar to Escherichia coli multidrug resistance-like ATP-binding protein MdlA or Mdl or b0448 SWALL:MDLA_ECOLI (SWALL:P77265) (590 aa) fasta scores: E(): 2.2e-169, 76.45% id in 582 aa; multidrug transporter membrane\ATP-binding protein 1312639..1314408 Pectobacterium atrosepticum SCRI1043 2885117 YP_049265.1 CDS mdlB NC_004547.2 1314401 1316176 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 multidrug resistance-like ATP-binding protein mdlb mdlb or mdl or b0449 or c0566 or z0559 or ecs0503 SWALL:MDLB_ECOLI (SWALL:P75706) (593 aa) fasta scores: E(): 1e-165, 74.61% id in 583 aa; multidrug transporter membrane\ATP-binding protein 1314401..1316176 Pectobacterium atrosepticum SCRI1043 2885118 YP_049266.1 CDS glnK NC_004547.2 1316552 1316875 D indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 1316552..1316875 Pectobacterium atrosepticum SCRI1043 2881774 YP_049267.1 CDS amtB NC_004547.2 1316909 1318201 D Similar to Escherichia coli, and Escherichia coli O157:H7 probable ammonium transporter AmtB or b0451 or z0563 or ecs0505 SWALL:AMTB_ECOLI (SWALL:P37905) (428 aa) fasta scores: E(): 4.1e-125, 76.11% id in 427 aa; ammonium transporter 1316909..1318201 Pectobacterium atrosepticum SCRI1043 2884177 YP_049268.1 CDS tesB NC_004547.2 1318319 1319182 R Similar to Escherichia coli, and Escherichia coli O157:H7 acyl-coa thioesterase II TesB or b0452 or z0564 or ecs0506 SWALL:TESB_ECOLI (SWALL:P23911) (285 aa) fasta scores: E(): 4.3e-85, 73.75% id in 282 aa; acyl-CoA thioesterase complement(1318319..1319182) Pectobacterium atrosepticum SCRI1043 2884305 YP_049269.1 CDS ECA1163 NC_004547.2 1319395 1319976 D Similar to Salmonella typhimurium glycoprotein/polysaccharide metabolism ybay or stm0465 SWALL:Q8ZRB1 (EMBL:AE008717) (189 aa) fasta scores: E(): 4e-30, 50.78% id in 191 aa, and to Salmonella typhi hypothetical lipoprotein Sty0509 sty0509 SWALL:Q8Z8U2 (EMBL:AL627266) (189 aa) fasta scores: E(): 6.1e-30, 50.26% id in 189 aa; lipoprotein 1319395..1319976 Pectobacterium atrosepticum SCRI1043 2883916 YP_049270.1 CDS ECA1164 NC_004547.2 1319996 1320316 R Similar to Yersinia pestis 6-O-methylguanine DNA methyltransferase family protein ypo3139 or y1045 SWALL:Q8ZC83 (EMBL:AJ414155) (181 aa) fasta scores: E(): 3.1e-26, 72% id in 100 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein ybaz ybaz or b0454 or sf0400 SWALL:YBAZ_ECOLI (SWALL:P75707) (129 aa) fasta scores: E(): 4.7e-24, 65.68% id in 102 aa; 6-O-methylguanine DNA methyltransferase complement(1319996..1320316) Pectobacterium atrosepticum SCRI1043 2883896 YP_049271.1 CDS hha NC_004547.2 1321060 1321263 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein complement(1321060..1321263) Pectobacterium atrosepticum SCRI1043 2882542 YP_049272.1 CDS ECA1166 NC_004547.2 1321317 1321685 R Similar to Yersinia pestis hypothetical protein ypo3137 or y1047 SWALL:Q8ZC84 (EMBL:AJ414155) (122 aa) fasta scores: E(): 8.8e-36, 74.59% id in 122 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ybaj or b0461 or c0579 or z0574 or ecs0514 SWALL:YBAJ_ECOLI (SWALL:P37611) (124 aa) fasta scores: E(): 1.4e-26, 60.83% id in 120 aa; hypothetical protein complement(1321317..1321685) Pectobacterium atrosepticum SCRI1043 2883897 YP_049273.1 CDS rpmJ NC_004547.2 1322284 1322427 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(1322284..1322427) Pectobacterium atrosepticum SCRI1043 2884493 YP_049274.1 CDS rpmE2 NC_004547.2 1322445 1322693 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(1322445..1322693) Pectobacterium atrosepticum SCRI1043 2884495 YP_049275.1 CDS acrB NC_004547.2 1322899 1326027 R Similar to Escherichia coli acriflavine resistance protein B AcrB or AcrE or b0462 SWALL:ACRB_ECOLI (SWALL:P31224) (1049 aa) fasta scores: E(): 0, 80.84% id in 1039 aa; acriflavin resistance protein B complement(1322899..1326027) Pectobacterium atrosepticum SCRI1043 2884692 YP_049276.1 CDS acrA NC_004547.2 1326056 1327249 R Similar to Escherichia coli, and Escherichia coli O157:H7 acriflavine resistance protein a precursor AcrA or MtcA or Lir or b0463 or z0578 or ecs0516 SWALL:ACRA_ECOLI (SWALL:P31223) (397 aa) fasta scores: E(): 4e-103, 72.29% id in 397 aa; acriflavine resistance protein A complement(1326056..1327249) Pectobacterium atrosepticum SCRI1043 2884691 YP_049277.1 CDS acrR NC_004547.2 1327415 1328056 D regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 1327415..1328056 Pectobacterium atrosepticum SCRI1043 2883936 YP_049278.1 CDS ECA1172 NC_004547.2 1328111 1328281 R Similar to Yersinia pestis hypothetical protein Ypo3128 SWALL:Q8ZC92 (EMBL:AJ414155) (51 aa) fasta scores: E(): 2e-09, 60.78% id in 51 aa, and to Escherichia coli O6 hypothetical protein ybam or c0585 SWALL:AAN79063 (EMBL:AE016756) (53 aa) fasta scores: E(): 6e-09, 62.26% id in 53 aa; hypothetical protein complement(1328111..1328281) Pectobacterium atrosepticum SCRI1043 2883898 YP_049279.1 CDS priC NC_004547.2 1328319 1328855 R Similar to Escherichia coli primosomal replication protein N'' PriC or b0467 SWALL:PRIC_ECOLI (SWALL:P23862) (174 aa) fasta scores: E(): 1.2e-14, 40.11% id in 172 aa; primosomal replication protein N'' complement(1328319..1328855) Pectobacterium atrosepticum SCRI1043 2882326 YP_049280.1 CDS ECA1174 NC_004547.2 1329039 1329440 D Similar to Yersinia pestis gene 58 y1058 SWALL:AAM84639 (EMBL:AE013709) (126 aa) fasta scores: E(): 6.6e-40, 77.23% id in 123 aa, and to Salmonella typhimurium, and Salmonella typhi phage gene 58 yban or stm0482 or sty0526 SWALL:Q8XGD2 (EMBL:AE008718) (125 aa) fasta scores: E(): 3.2e-38, 73.17% id in 123 aa; hypothetical protein 1329039..1329440 Pectobacterium atrosepticum SCRI1043 2883899 YP_049281.1 CDS apt NC_004547.2 1329655 1330212 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1329655..1330212 Pectobacterium atrosepticum SCRI1043 2884163 YP_049282.1 CDS dnaX NC_004547.2 1330287 1332362 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1330287..1332362 Pectobacterium atrosepticum SCRI1043 2882283 YP_049283.1 CDS ECA1177 NC_004547.2 1332403 1332732 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri hypothetical protein ybab SWALL:YBAB_ECOLI (SWALL:P17577) (109 aa) fasta scores: E(): 5.8e-35, 91.74% id in 109 aa, and to Yersinia pestis hypothetical protein ypo3121/y1061 ypo3121 or y1061 SWALL:YV21_YERPE (SWALL:Q8ZC96) (110 aa) fasta scores: E(): 4.2e-34, 92.72% id in 110 aa; hypothetical protein 1332403..1332732 Pectobacterium atrosepticum SCRI1043 2883872 YP_049284.1 CDS recR NC_004547.2 1332732 1333337 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1332732..1333337 Pectobacterium atrosepticum SCRI1043 2885276 YP_049285.1 CDS htpG NC_004547.2 1333507 1335396 D molecular chaperone; heat shock protein 90 1333507..1335396 Pectobacterium atrosepticum SCRI1043 2883838 YP_049286.1 CDS adk NC_004547.2 1335658 1336302 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1335658..1336302 Pectobacterium atrosepticum SCRI1043 2883812 YP_049287.1 CDS hemH NC_004547.2 1336525 1337487 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1336525..1337487 Pectobacterium atrosepticum SCRI1043 2882905 YP_049288.1 CDS ECA1182 NC_004547.2 1337606 1339291 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; cation:proton antiport protein complement(1337606..1339291) Pectobacterium atrosepticum SCRI1043 2883873 YP_049289.1 CDS ECA1183 NC_004547.2 1339634 1339852 D Doubtful CDS. No significant database matches; hypothetical protein 1339634..1339852 Pectobacterium atrosepticum SCRI1043 2883874 YP_049290.1 CDS ushA NC_004547.2 1339959 1341608 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 1339959..1341608 Pectobacterium atrosepticum SCRI1043 2882962 YP_049291.1 CDS ECA1185 NC_004547.2 1341797 1343851 D no significant database matches; hypothetical protein 1341797..1343851 Pectobacterium atrosepticum SCRI1043 2883849 YP_049292.1 CDS ECA1186 NC_004547.2 1343981 1346041 D no significant database matches; hypothetical protein 1343981..1346041 Pectobacterium atrosepticum SCRI1043 2883850 YP_049293.1 CDS ECA1187 NC_004547.2 1346334 1348487 D Similar to Escherichia coli O157:H7 carbon starvation protein yjiy or z5953 or ecs5313 SWALL:Q8XB65 (EMBL:AE005666) (721 aa) fasta scores: E(): 0, 87.44% id in 717 aa, and to Shigella flexneri carbon starvation protein yjiy or sf4372 SWALL:AAN45788 (EMBL:AE015443) (721 aa) fasta scores: E(): 0, 87.44% id in 717 aa; carbon starvation protein 1346334..1348487 Pectobacterium atrosepticum SCRI1043 2883851 YP_049294.1 CDS ECA1188 NC_004547.2 1348630 1348836 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjix or b4353 or c5428 or z5952 or ecs5312 or sf4371 SWALL:YJIX_ECOLI (SWALL:P39395) (67 aa) fasta scores: E(): 4.2e-23, 83.58% id in 67 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yjix or stm4531 or sty4889 SWALL:Q8XF65 (EMBL:AE008913) (67 aa) fasta scores: E(): 1.1e-22, 83.58% id in 67 aa; hypothetical protein 1348630..1348836 Pectobacterium atrosepticum SCRI1043 2883815 YP_049295.1 CDS ECA1189 NC_004547.2 1348853 1349839 D Similar to Escherichia coli hypothetical protein yjia or b4352 SWALL:YJIA_ECOLI (SWALL:P24203) (318 aa) fasta scores: E(): 1e-81, 67.93% id in 315 aa, and to Salmonella typhimurium cobalamin synthesis protein yjia or stm4530 SWALL:Q8ZJY6 (EMBL:AE008913) (318 aa) fasta scores: E(): 3.6e-81, 68.88% id in 315 aa; GTP-binding protein YjiA 1348853..1349839 Pectobacterium atrosepticum SCRI1043 2883816 YP_049296.1 CDS pehN NC_004547.2 1350115 1351497 D Similar to Erwinia chrysanthemi polygalacturonase precursor PehN SWALL:Q8KKH7 (EMBL:AJ292044) (457 aa) fasta scores: E(): 9.4e-151, 80.13% id in 458 aa; polygalacturonase 1350115..1351497 Pectobacterium atrosepticum SCRI1043 2881647 YP_049297.1 CDS ECA1191 NC_004547.2 1351949 1352428 R Similar to Salmonella typhi hypothetical protein Sty0541 SWALL:Q8Z8S7 (EMBL:AL627267) (159 aa) fasta scores: E(): 2.5e-43, 75.47% id in 159 aa, and to Escherichia coli O6 protein ybak or c0601 SWALL:AAN79079 (EMBL:AE016756) (159 aa) fasta scores: E(): 3e-42, 72.95% id in 159 aa; hypothetical protein complement(1351949..1352428) Pectobacterium atrosepticum SCRI1043 2883817 YP_049298.1 CDS ECA1192 NC_004547.2 1352499 1353317 R Similar to Yersinia pestis hypothetical protein ypo3087 or y1091 SWALL:AAM84669 (EMBL:AJ414155) (269 aa) fasta scores: E(): 1.1e-62, 62.87% id in 264 aa, and to Escherichia coli O6 hypothetical protein ybap or c0602 SWALL:AAN79080 (EMBL:AE016756) (264 aa) fasta scores: E(): 6.8e-51, 52.49% id in 261 aa; hypothetical protein complement(1352499..1353317) Pectobacterium atrosepticum SCRI1043 2883744 YP_049299.1 CDS copA NC_004547.2 1353473 1356196 R Similar to Escherichia coli copper-transporting P-type ATPase CopA or b0484 SWALL:ATCU_ECOLI (SWALL:Q59385) (833 aa) fasta scores: E(): 4.8e-208, 71.37% id in 835 aa; copper exporting ATPase complement(1353473..1356196) Pectobacterium atrosepticum SCRI1043 2884949 YP_049300.1 CDS cueR NC_004547.2 1356312 1356722 D Similar to Escherichia coli, and Shigella flexneri transcriptional regulator CueR or b0487 or sf0432 SWALL:CUER_ECOLI (SWALL:P77565) (135 aa) fasta scores: E(): 8.4e-34, 72.51% id in 131 aa; copper efflux regulator 1356312..1356722 Pectobacterium atrosepticum SCRI1043 2883775 YP_049301.1 CDS ECA1195 NC_004547.2 1356757 1357212 R Similar to Yersinia pestis membrane protein ypo3084 or y1095 SWALL:Q8ZCA9 (EMBL:AJ414155) (149 aa) fasta scores: E(): 2.4e-35, 60% id in 150 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein ybbj or b0488 or sf0433 SWALL:YBBJ_ECOLI (SWALL:P75709) (151 aa) fasta scores: E(): 2e-34, 59.73% id in 149 aa; hypothetical protein complement(1356757..1357212) Pectobacterium atrosepticum SCRI1043 2883745 YP_049302.1 CDS ECA1196 NC_004547.2 1357212 1358126 R Similar to Yersinia pestis hypothetical protein ypo3083 or y1096 SWALL:Q8ZCB0 (EMBL:AJ414155) (304 aa) fasta scores: E(): 3.7e-94, 90.13% id in 304 aa, and to Salmonella typhimurium inner membrane protein ybbk or stm0501 SWALL:Q8ZR94 (EMBL:AE008719) (305 aa) fasta scores: E(): 2.8e-90, 86.09% id in 302 aa; hypothetical protein complement(1357212..1358126) Pectobacterium atrosepticum SCRI1043 2883746 YP_049303.1 CDS ECA1197 NC_004547.2 1358390 1358650 R plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin complement(1358390..1358650) Pectobacterium atrosepticum SCRI1043 2883719 YP_049304.1 CDS nrdB NC_004547.2 1358654 1359784 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(1358654..1359784) Pectobacterium atrosepticum SCRI1043 2881660 YP_049305.1 CDS nrdA NC_004547.2 1359896 1362181 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1359896..1362181) Pectobacterium atrosepticum SCRI1043 2881659 YP_049306.1 CDS ubiG NC_004547.2 1362525 1363250 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(1362525..1363250) Pectobacterium atrosepticum SCRI1043 2884210 YP_049307.1 CDS gyrA NC_004547.2 1363499 1366138 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1363499..1366138 Pectobacterium atrosepticum SCRI1043 2883509 YP_049308.1 CDS rcsC NC_004547.2 1366254 1369109 D Similar to Escherichia coli sensor protein RcsC or b2218 SWALL:RCSC_ECOLI (SWALL:P14376) (949 aa) fasta scores: E(): 1.6e-216, 58.97% id in 953 aa; hybrid sensory kinase in two-component regulatory system with RcsB and YojN 1366254..1369109 Pectobacterium atrosepticum SCRI1043 2884513 YP_049309.1 CDS rcsB NC_004547.2 1369147 1369791 R two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB complement(1369147..1369791) Pectobacterium atrosepticum SCRI1043 2884512 YP_049310.1 CDS ECA1204 NC_004547.2 1369800 1372484 R Similar to Salmonella typhimurium sensor/kinase in regulatory system yojn or stm2269 SWALL:Q8ZNH2 (EMBL:AE008801) (889 aa) fasta scores: E(): 2.3e-141, 45.11% id in 891 aa; phosphotransfer intermediate protein in two-component regulatory system with RcsBC complement(1369800..1372484) Pectobacterium atrosepticum SCRI1043 2883720 YP_049311.1 CDS ECA1205 NC_004547.2 1372498 1373667 R Similar to Yersinia pestis membrane protein ypo1221 or y2967 SWALL:Q8ZGR2 (EMBL:AJ414147) (384 aa) fasta scores: E(): 1.1e-95, 69.16% id in 373 aa, and to Bradyrhizobium japonicum Blr6253 protein blr6253 SWALL:BAC51518 (EMBL:AP005957) (436 aa) fasta scores: E(): 8.5e-59, 47.76% id in 381 aa; hypothetical protein complement(1372498..1373667) Pectobacterium atrosepticum SCRI1043 2883721 YP_049312.1 CDS ECA1206 NC_004547.2 1373804 1374223 R Similar to Agrobacterium tumefaciens hypothetical protein atu0863 atu0863 or agr_c_1578 SWALL:Q8UH22 (EMBL:AE009052) (143 aa) fasta scores: E(): 7e-27, 61.11% id in 126 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein bll5105 SWALL:BAC50370 (EMBL:AP005953) (140 aa) fasta scores: E(): 9.7e-16, 50.47% id in 105 aa; transcriptional regulator complement(1373804..1374223) Pectobacterium atrosepticum SCRI1043 2883722 YP_049313.1 CDS ECA1207 NC_004547.2 1374601 1375371 D Similar to Rhizobium meliloti sdr family dehydrogenase protein rb0962 or smb21384 SWALL:Q92UX3 (EMBL:AL603645) (247 aa) fasta scores: E(): 3e-56, 64.75% id in 244 aa, and to Agrobacterium tumefaciens oxidoreductase atu0864 or agr_c_1580 SWALL:Q8UH21 (EMBL:AE009052) (252 aa) fasta scores: E(): 2.7e-38, 48.38% id in 248 aa; short chain dehydrogenase 1374601..1375371 Pectobacterium atrosepticum SCRI1043 2883700 YP_049314.1 CDS ECA1208 NC_004547.2 1375437 1376318 D Similar to Rhizobium meliloti sdr family dehydrogenase protein rb0961 or smb21383 SWALL:Q92UX4 (EMBL:AL603645) (296 aa) fasta scores: E(): 7.1e-51, 57.04% id in 291 aa, and to Xanthomonas axonopodis short chain dehydrogenase xac0083 SWALL:Q8PR80 (EMBL:AE011631) (245 aa) fasta scores: E(): 1.4e-40, 55.83% id in 240 aa; short chain dehydrogenase 1375437..1376318 Pectobacterium atrosepticum SCRI1043 2883701 YP_049315.1 CDS ECA1209 NC_004547.2 1376426 1377313 D Similar to Rhizobium meliloti sdr family dehydrogenase protein rb0961 or smb21383 SWALL:Q92UX4 (EMBL:AL603645) (296 aa) fasta scores: E(): 1e-56, 60.87% id in 299 aa, and to Xanthomonas axonopodis short chain dehydrogenase xac0083 SWALL:Q8PR80 (EMBL:AE011631) (245 aa) fasta scores: E(): 2.6e-45, 57.5% id in 240 aa; short chain dehydrogenase 1376426..1377313 Pectobacterium atrosepticum SCRI1043 2883702 YP_049316.1 CDS menF NC_004547.2 1377747 1379069 D synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase 1377747..1379069 Pectobacterium atrosepticum SCRI1043 2884544 YP_049317.1 CDS menD NC_004547.2 1379359 1381041 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 1379359..1381041 Pectobacterium atrosepticum SCRI1043 2884542 YP_049318.1 CDS ECA1212 NC_004547.2 1381068 1381829 D catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase 1381068..1381829 Pectobacterium atrosepticum SCRI1043 2883290 YP_049319.1 CDS menB NC_004547.2 1381835 1382692 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1381835..1382692 Pectobacterium atrosepticum SCRI1043 2884911 YP_049320.1 CDS menC NC_004547.2 1382692 1383663 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 1382692..1383663 Pectobacterium atrosepticum SCRI1043 2884912 YP_049321.1 CDS menE NC_004547.2 1383651 1385081 D Similar to Escherichia coli O-succinylbenzoic acid--CoA ligase MenE or b2260 SWALL:MENE_ECOLI (SWALL:P37353) (451 aa) fasta scores: E(): 1.5e-76, 53.43% id in 466 aa; O-succinylbenzoic acid--CoA ligase 1383651..1385081 Pectobacterium atrosepticum SCRI1043 2884543 YP_049322.1 CDS katA NC_004547.2 1385223 >1385450 R Partial CDS. Similar to the N-terminal regions of several catalases including Proteus mirabilis catalase KatA SWALL:CATA_PROMI (SWALL:P42321) (484 aa) fasta scores: E(): 0.072, 40.38% id in 52 aa, and to Yersinia pestis catalase KatA or ypo1207 or KatE or y2981 SWALL:Q8ZGS4 (EMBL:AJ414147) (480 aa) fasta scores: E(): 0.013, 42.3% id in 52 aa; catalase (partial) complement(1385223..>1385450) Pectobacterium atrosepticum SCRI1043 2885366 YP_049323.1 CDS ECA1217 NC_004547.2 1385671 1386210 D Similar to Yersinia pestis hypothetical protein y2980 SWALL:Q8D012 (EMBL:AE013899) (180 aa) fasta scores: E(): 9.3e-31, 47.77% id in 180 aa, and to Escherichia coli hypothetical protein yfaz precursor yfaz or b2250 SWALL:YFAZ_ECOLI (SWALL:P76471) (180 aa) fasta scores: E(): 4.1e-29, 46.11% id in 180 aa; hypothetical protein 1385671..1386210 Pectobacterium atrosepticum SCRI1043 2883291 YP_049324.1 CDS tyrP NC_004547.2 1386405 1387613 R Similar to Escherichia coli, and Shigella flexneri tyrosine-specific transport protein TyrP or b1907 or sf1953 SWALL:TYRP_ECOLI (SWALL:P18199) (403 aa) fasta scores: E(): 3.6e-112, 73.13% id in 402 aa; tyrosine-specific transport protein complement(1386405..1387613) Pectobacterium atrosepticum SCRI1043 2884219 YP_049325.1 CDS ECA1219 NC_004547.2 1387959 1389152 D Similar to Yersinia pestis hypothetical protein ypo1210 or y2978 SWALL:AAM86529 (EMBL:AJ414147) (397 aa) fasta scores: E(): 2.8e-102, 67.83% id in 398 aa, and to Escherichia coli O6 cina-like protein c2791 SWALL:AAN81245 (EMBL:AE016763) (400 aa) fasta scores: E(): 1.5e-95, 63.5% id in 400 aa; competence damage-inducible protein A 1387959..1389152 Pectobacterium atrosepticum SCRI1043 2883292 YP_049326.1 CDS ECA1220 NC_004547.2 1389664 1390524 R Similar to Yersinia pestis thioredoxin ypo3082 or y1097 SWALL:Q8ZCB1 (EMBL:AJ414155) (289 aa) fasta scores: E(): 1e-69, 71.93% id in 285 aa, and to Escherichia coli hypothetical protein ybbn or b0492 SWALL:YBBN_ECOLI (SWALL:P77395) (284 aa) fasta scores: E(): 3.8e-68, 70.96% id in 279 aa; thioredoxin complement(1389664..1390524) Pectobacterium atrosepticum SCRI1043 2883153 YP_049327.1 CDS ECA1221 NC_004547.2 1390635 1391405 R Similar to Yersinia pestis probable short-chain dehydrogenase ypo3081 or y1098 SWALL:Q8ZCB2 (EMBL:AJ414155) (258 aa) fasta scores: E(): 5.7e-78, 81.64% id in 256 aa, and to Salmonella typhimurium, and Salmonella typhi oxidoreductase ybbo or stm0505 or sty0551 SWALL:Q8XGS4 (EMBL:AE008719) (256 aa) fasta scores: E(): 2.2e-67, 68.23% id in 255 aa; short chain dehydrogenase complement(1390635..1391405) Pectobacterium atrosepticum SCRI1043 2883154 YP_049328.1 CDS tesA NC_004547.2 1391434 1392117 R Similar to Escherichia coli, and Escherichia coli O6 acyl-CoA thioesterase I precursor TesA or ApeA or PldC or b0494 or c0615 SWALL:TESA_ECOLI (SWALL:P29679) (208 aa) fasta scores: E(): 7e-57, 67.4% id in 227 aa; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 complement(1391434..1392117) Pectobacterium atrosepticum SCRI1043 2884304 YP_049329.1 CDS ECA1223 NC_004547.2 1392238 1392771 D Similar to Yersinia pestis ABC transporter ATP-binding protein ypo3079 or y1100 SWALL:Q8ZCB4 (EMBL:AJ414155) (228 aa) fasta scores: E(): 1.2e-52, 81.35% id in 177 aa, and to Salmonella typhimurium, and Salmonella typhi ABC superfamily ybba or stm0507 or sty0553 SWALL:Q8XFS8 (EMBL:AE008719) (228 aa) fasta scores: E(): 3.2e-49, 76.27% id in 177 aa; ABC transporter ATP-binding protein 1392238..1392771 Pectobacterium atrosepticum SCRI1043 2883155 YP_049330.1 CDS ECA1224 NC_004547.2 1392768 1395197 D Similar to Yersinia pestis permease ypo3078 SWALL:Q8ZCB5 (EMBL:AJ414155) (809 aa) fasta scores: E(): 0, 75.24% id in 808 aa, and to Escherichia coli hypothetical protein ybbp or b0496 SWALL:YBBP_ECOLI (SWALL:P77504) (804 aa) fasta scores: E(): 0, 69.87% id in 810 aa; hypothetical protein 1392768..1395197 Pectobacterium atrosepticum SCRI1043 2883143 YP_049331.1 CDS hybO NC_004547.2 1395770 1396903 D involved in hydrogen uptake; hydrogenase 2 small subunit 1395770..1396903 Pectobacterium atrosepticum SCRI1043 2883551 YP_049332.1 CDS hybA NC_004547.2 1396907 1397917 D Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 1396907..1397917 Pectobacterium atrosepticum SCRI1043 2883684 YP_049333.1 CDS hybB NC_004547.2 1397910 1399103 D HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; hydrogenase 2 b cytochrome subunit 1397910..1399103 Pectobacterium atrosepticum SCRI1043 2883685 YP_049334.1 CDS hybC NC_004547.2 1399081 1400775 D involved in hydrogen uptake; hydrogenase 2 large subunit 1399081..1400775 Pectobacterium atrosepticum SCRI1043 2883686 YP_049335.2 CDS hybD NC_004547.2 1400775 1401275 D protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase 1400775..1401275 Pectobacterium atrosepticum SCRI1043 2883549 YP_049336.1 CDS hybE NC_004547.2 1401259 1401732 D Similar to Escherichia coli, and Escherichia coli O6 hydrogenase-2 operon protein HybE or b2992 or c3729 SWALL:HYBE_ECOLI (SWALL:P37183) (162 aa) fasta scores: E(): 1.3e-27, 48.05% id in 154 aa; hydrogenase 2-specific chaperone 1401259..1401732 Pectobacterium atrosepticum SCRI1043 2883550 YP_049337.1 CDS hypE NC_004547.2 1401792 1402802 R Similar to Escherichia coli hydrogenase isoenzymes formation protein HypE or b2730 SWALL:HYPE_ECOLI (SWALL:P24193) (322 aa) fasta scores: E(): 1.7e-97, 78.88% id in 322 aa; hydrogenase isoenzyme formation protein complement(1401792..1402802) Pectobacterium atrosepticum SCRI1043 2883015 YP_049338.1 CDS hypD NC_004547.2 1402802 1403920 R Similar to Escherichia coli hydrogenase isoenzymes formation protein HypD or b2729 SWALL:HYPD_ECOLI (SWALL:P24192) (373 aa) fasta scores: E(): 2.4e-119, 76.55% id in 371 aa; hydrogenase isoenzyme formation protein complement(1402802..1403920) Pectobacterium atrosepticum SCRI1043 2883014 YP_049339.1 CDS hypC NC_004547.2 1403920 1404198 R HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase assembly chaperone complement(1403920..1404198) Pectobacterium atrosepticum SCRI1043 2883023 YP_049340.1 CDS hypB NC_004547.2 1404189 1405064 R GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB complement(1404189..1405064) Pectobacterium atrosepticum SCRI1043 2883022 YP_049341.1 CDS hypA NC_004547.2 1405066 1405419 R plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein complement(1405066..1405419) Pectobacterium atrosepticum SCRI1043 2883021 YP_049342.1 CDS hyfR NC_004547.2 1406110 1408089 D Similar to Escherichia coli hydrogenase-4 transcriptional activator HyfR or b2491 SWALL:HYFR_ECOLI (SWALL:P71229) (670 aa) fasta scores: E(): 2e-110, 50.07% id in 655 aa; hydrogenase-4 transcriptional activator 1406110..1408089 Pectobacterium atrosepticum SCRI1043 2883020 YP_049343.1 CDS hycI NC_004547.2 1408141 1408623 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease complement(1408141..1408623) Pectobacterium atrosepticum SCRI1043 2883422 YP_049344.1 CDS hyfJ NC_004547.2 1408628 1409050 R Similar to Escherichia coli hydrogenase-4 component J HyfJ or b2490 SWALL:HYFJ_ECOLI (SWALL:P77453) (137 aa) fasta scores: E(): 2.4e-23, 50% id in 136 aa; hydrogenase-4 subunit J complement(1408628..1409050) Pectobacterium atrosepticum SCRI1043 2883282 YP_049345.1 CDS hyfI NC_004547.2 1409043 1409822 R Similar to Escherichia coli hydrogenase-4 component I HyfI or b2489 SWALL:HYFI_ECOLI (SWALL:P77668) (252 aa) fasta scores: E(): 5.7e-68, 72.06% id in 247 aa; hydrogenase-4 subunit I complement(1409043..1409822) Pectobacterium atrosepticum SCRI1043 2883281 YP_049346.1 CDS hyfH NC_004547.2 1409819 1410370 R probable electron transfer protein for hydrogenase 4; hydrogenase 4 is believed to be silent in E. coli under conditions tested so far; hydrogenase 4 subunit H complement(1409819..1410370) Pectobacterium atrosepticum SCRI1043 2883280 YP_049347.1 CDS hyfG NC_004547.2 1410378 1412114 R Similar to Escherichia coli hydrogenase-4 component G HyfG or b2487 SWALL:HYFG_ECOLI (SWALL:P77329) (555 aa) fasta scores: E(): 3.1e-128, 78.03% id in 569 aa; hydrogenase-4 subunit G complement(1410378..1412114) Pectobacterium atrosepticum SCRI1043 2883301 YP_049348.1 CDS hyfF NC_004547.2 1412101 1413714 R Catalyzes the transfer of electrons from NADH to ubiquinone; hydrogenase 4 subunit F complement(1412101..1413714) Pectobacterium atrosepticum SCRI1043 2883300 YP_049349.1 CDS hyfE NC_004547.2 1413719 1414369 R interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide; hydrogenase 4 membrane subunit complement(1413719..1414369) Pectobacterium atrosepticum SCRI1043 2883299 YP_049350.1 CDS hyfD NC_004547.2 1414382 1415842 R Similar to Escherichia coli hydrogenase-4 component D HyfD or b2484 SWALL:HYFD_ECOLI (SWALL:P77416) (479 aa) fasta scores: E(): 1.2e-133, 72.65% id in 479 aa; hydrogenase 4 subunit D complement(1414382..1415842) Pectobacterium atrosepticum SCRI1043 2883392 YP_049351.1 CDS hyfC NC_004547.2 1415858 1416808 R Similar to Escherichia coli hydrogenase-4 component C HyfC or b2483 SWALL:HYFC_ECOLI (SWALL:P77858) (315 aa) fasta scores: E(): 4.9e-85, 73.35% id in 304 aa; hydrogenase-4 subunit C complement(1415858..1416808) Pectobacterium atrosepticum SCRI1043 2883391 YP_049352.1 CDS hyfB NC_004547.2 1416819 1418834 R Catalyzes the transfer of electrons from NADH to ubiquinone; hydrogenase 4 subunit B complement(1416819..1418834) Pectobacterium atrosepticum SCRI1043 2883390 YP_049353.1 CDS hyfA NC_004547.2 1418837 1419457 R Similar to Escherichia coli hydrogenase-4 component A HyfA or b2481 SWALL:HYFA_ECOLI (SWALL:P23481) (205 aa) fasta scores: E(): 4.1e-36, 49.75% id in 207 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri formate hydrogenlyase subunit 2 hycb or hevb or b2724 or c3284 or sf2741 SWALL:HYCB_ECOLI (SWALL:P16428) (203 aa) fasta scores: E(): 5.2e-37, 50.24% id in 205 aa; hydrogenase-4 subunit A complement(1418837..1419457) Pectobacterium atrosepticum SCRI1043 2883424 YP_049354.1 CDS ECA1248 NC_004547.2 1419553 1419789 R no significant database matches; hypothetical protein complement(1419553..1419789) Pectobacterium atrosepticum SCRI1043 2883144 YP_049355.1 CDS hydN NC_004547.2 1420000 1420545 D involved in electron transport from formate to hydrogen; electron transport protein HydN 1420000..1420545 Pectobacterium atrosepticum SCRI1043 2883423 YP_049356.1 CDS fdhF NC_004547.2 1420602 1422752 D Similar to Escherichia coli formate dehydrogenase H FdhF or b4079 SWALL:FDHF_ECOLI (SWALL:P07658) (715 aa) fasta scores: E(): 2.2e-193, 64.61% id in 715 aa; formate dehydrogenase H 1420602..1422752 Pectobacterium atrosepticum SCRI1043 2883037 YP_049357.1 CDS hypF NC_004547.2 1422749 1425052 D Similar to Escherichia coli hydrogenase maturation protein HypF or HydA or b2712 SWALL:HYPF_ECOLI (SWALL:P30131) (750 aa) fasta scores: E(): 1.3e-206, 67.71% id in 734 aa; hydrogenase maturation protein 1422749..1425052 Pectobacterium atrosepticum SCRI1043 2883016 YP_049358.1 CDS hoxN NC_004547.2 1425057 1426040 D Similar to Alcaligenes eutrophus high-affinity nickel transport protein HoxN SWALL:HOXN_ALCEU (SWALL:P23516) (351 aa) fasta scores: E(): 1.2e-68, 54.63% id in 324 aa, and to Bradyrhizobium japonicum hydrogenase nickel incorporation protein HupN or bll6949 SWALL:HUPN_BRAJA (SWALL:Q45247) (381 aa) fasta scores: E(): 1.8e-62, 51.91% id in 314 aa; high-affinity nickel transport protein 1425057..1426040 Pectobacterium atrosepticum SCRI1043 2881632 YP_049359.1 CDS purN NC_004547.2 1426256 1426894 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(1426256..1426894) Pectobacterium atrosepticum SCRI1043 2881274 YP_049360.1 CDS purM NC_004547.2 1426894 1427931 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1426894..1427931) Pectobacterium atrosepticum SCRI1043 2881273 YP_049361.1 CDS upp NC_004547.2 1428285 1428911 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1428285..1428911 Pectobacterium atrosepticum SCRI1043 2882936 YP_049362.1 CDS uraA NC_004547.2 1429248 1430537 D Similar to Escherichia coli, and Escherichia coli O157:H7 uracil permease UraA or b2497 or z3760 or ecs3359 SWALL:URAA_ECOLI (SWALL:P33780) (429 aa) fasta scores: E(): 2.7e-132, 86.85% id in 426 aa; uracil transporter 1429248..1430537 Pectobacterium atrosepticum SCRI1043 2882961 YP_049363.1 CDS ECA1257 NC_004547.2 1430628 1431344 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1430628..1431344 Pectobacterium atrosepticum SCRI1043 2883145 YP_049364.1 CDS ECA1258 NC_004547.2 1431390 1431761 R Similar to Yersinia pestis arsenate reductase ypo3070 SWALL:Q8ZCC2 (EMBL:AJ414155) (118 aa) fasta scores: E(): 2.4e-28, 72.8% id in 114 aa, and to Escherichia coli protein yfgd or b2495 SWALL:YFGD_ECOLI (SWALL:P76569) (119 aa) fasta scores: E(): 2.2e-27, 71.05% id in 114 aa; arsenate reductase complement(1431390..1431761) Pectobacterium atrosepticum SCRI1043 2883139 YP_049365.1 CDS ECA1259 NC_004547.2 1431776 1433239 R Similar to Yersinia pestis hypothetical protein ypo3069/y1412 precursor ypo3069 or y1412 SWALL:YU69_YERPE (SWALL:Q8ZCC3) (486 aa) fasta scores: E(): 4.4e-134, 75.97% id in 487 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yfgc precursor yfgc or b2494 or sf2538 SWALL:YFGC_ECOLI (SWALL:P76568) (487 aa) fasta scores: E(): 7.1e-129, 71.22% id in 483 aa; hypothetical protein complement(1431776..1433239) Pectobacterium atrosepticum SCRI1043 2883140 YP_049366.1 CDS bcp NC_004547.2 1433409 1433876 R bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase complement(1433409..1433876) Pectobacterium atrosepticum SCRI1043 2881542 YP_049367.1 CDS gcvR NC_004547.2 1433929 1434480 R negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor complement(1433929..1434480) Pectobacterium atrosepticum SCRI1043 2881789 YP_049368.1 CDS dapA NC_004547.2 1434853 1435731 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1434853..1435731 Pectobacterium atrosepticum SCRI1043 2885273 YP_049369.1 CDS nlpB NC_004547.2 1435748 1436785 D Similar to Escherichia coli, and Shigella flexneri lipoprotein-34 precursor NlpB or DapX or b2477 or sf2520 SWALL:NLPB_ECOLI (SWALL:P21167) (344 aa) fasta scores: E(): 1.7e-83, 64.05% id in 345 aa; lipoprotein 1435748..1436785 Pectobacterium atrosepticum SCRI1043 2881290 YP_049370.1 CDS purC NC_004547.2 1436929 1437642 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1436929..1437642 Pectobacterium atrosepticum SCRI1043 2881845 YP_049371.1 CDS ECA1265 NC_004547.2 1437843 1438295 D Similar to Yersinia pestis membrane protein ypo3057 SWALL:Q8ZCD4 (EMBL:AJ414155) (150 aa) fasta scores: E(): 5.6e-44, 83.33% id in 150 aa, and to Salmonella typhi membrane protein sty1838 SWALL:Q8Z6E5 (EMBL:AL627271) (148 aa) fasta scores: E(): 1.7e-36, 71.03% id in 145 aa; hypothetical protein 1437843..1438295 Pectobacterium atrosepticum SCRI1043 2883141 YP_049372.1 CDS ECA1266 NC_004547.2 1438319 1440418 D Similar to Yersinia pestis acetyltransferase ypo3056 or y1424 SWALL:Q8ZCD5 (EMBL:AJ414155) (699 aa) fasta scores: E(): 4e-156, 56.57% id in 677 aa, and to Escherichia coli O157:H7 orf, hypothetical protein ypfi or z3733 or ecs3336 SWALL:Q8XBD6 (EMBL:AE005477) (671 aa) fasta scores: E(): 4.7e-72, 51.68% id in 681 aa; acetyltransferase 1438319..1440418 Pectobacterium atrosepticum SCRI1043 2883142 YP_049373.1 CDS ECA1267 NC_004547.2 1440451 1441716 R The N-terminal region of this CDS is similar to several thioredoxinx including Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri thioredoxin 1 SWALL:THIO_ECOLI (SWALL:P00274) (108 aa) fasta scores: E(): 1.7e-14, 46.22% id in 106 aa, and to Thiobacillus ferrooxidans thioredoxin trxA SWALL:THIO_THIFE (SWALL:P52233) (108 aa) fasta scores: E(): 2.3e-14, 45.79% id in 107 aa; thioredoxin complement(1440451..1441716) Pectobacterium atrosepticum SCRI1043 2885536 YP_049374.1 CDS tldD NC_004547.2 1441783 1443228 R Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri TldD protein or b3244 or c3999 or sf3283 SWALL:TLDD_ECOLI (SWALL:P46473) (481 aa) fasta scores: E(): 6e-95, 54.66% id in 472 aa. Also similar to ECA0273 (55.297% id. in 472 aa overlap); suppressor of the inhibitory activity of the carbon storage regulator CsrA complement(1441783..1443228) Pectobacterium atrosepticum SCRI1043 2884278 YP_049375.1 CDS ECA1269 NC_004547.2 1443263 1444627 R Similar to Escherichia coli, and Escherichia coli O157:H7 PmbA protein PmbA or TldE or b4235 or z5845 or ecs5212 SWALL:PMBA_ECOLI (SWALL:P24231) (450 aa) fasta scores: E(): 1.8e-61, 41.4% id in 442 aa; suppressor of the inhibitory activity of the carbon storage regulator CsrA complement(1443263..1444627) Pectobacterium atrosepticum SCRI1043 2885537 YP_049376.1 CDS ECA1270 NC_004547.2 1444792 1445214 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri biopolymer transport ExbD protein ExbD or b3005 or c3740 or z4358 or ecs3889 or sf3050 SWALL:EXBD_ECOLI (SWALL:P18784) (141 aa) fasta scores: E(): 1.3e-08, 34.32% id in 134 aa, and to Neisseria gonorrhoeae biopolymer transport ExbD protein ExbD SWALL:EXBD_NEIGO (SWALL:O06434) (144 aa) fasta scores: E(): 1.6e-12, 39% id in 141 aa; biopolymer transport protein complement(1444792..1445214) Pectobacterium atrosepticum SCRI1043 2885538 YP_049377.1 CDS ECA1271 NC_004547.2 1445229 1446005 R Similar to Neisseria meningitidis biopolymer transport ExbB protein WALL:EXBB_NEIMC (SWALL:P95375) (220 aa) fasta scores: E(): 1e-23, 38.42% id in 216 aa, and to Xanthomonas campestris biopolymer transport ExbB protein or xcc0009 SWALL:EXBB_XANCP (SWALL:O34260) (253 aa) fasta scores: E(): 1.8e-24, 39.81% id in 216 aa; biopolymer transport protein complement(1445229..1446005) Pectobacterium atrosepticum SCRI1043 2885680 YP_049378.1 CDS ECA1272 NC_004547.2 1446084 1446962 R Similar to Escherichia coli TonB protein TonB or ExbA or b1252 SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 0.00081, 31.57% id in 247 aa, and to Bordetella pertussis TonB protein SWALL:Q9S3M6 (EMBL:AJ132741) (266 aa) fasta scores: E(): 1.3e-11, 34.55% id in 246 aa; TonB-like protein complement(1446084..1446962) Pectobacterium atrosepticum SCRI1043 2885681 YP_049379.1 CDS ECA1273 NC_004547.2 1447133 1448107 R Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 2.9e-18, 30.09% id in 309 aa, and to Pseudomonas aeruginosa probable transmembrane sensor pa0471 SWALL:Q9I647 (EMBL:AE004485) (323 aa) fasta scores: E(): 8.9e-27, 32.58% id in 313 aa; sensor protein complement(1447133..1448107) Pectobacterium atrosepticum SCRI1043 2885682 YP_049380.1 CDS ECA1274 NC_004547.2 1448117 1448638 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1448117..1448638) Pectobacterium atrosepticum SCRI1043 2882907 YP_049381.1 CDS ECA1275 NC_004547.2 1449048 1451423 D Similar to Anabaena sp. ferrichrome-iron receptor all2610 SWALL:Q8YTV3 (EMBL:AP003590) (857 aa) fasta scores: E(): 3.4e-38, 27.33% id in 684 aa, and to Pseudomonas putida outer membrane ferric siderophore receptor, pp3155 SWALL:AAN68763 (EMBL:AE016785) (709 aa) fasta scores: E(): 2.2e-29, 27.35% id in 691 aa; TonB-dependent ferrichrome-iron receptor 1449048..1451423 Pectobacterium atrosepticum SCRI1043 2882908 YP_049382.1 CDS ECA1276 NC_004547.2 1451498 1453288 D Similar to Bradyrhizobium japonicum Blr7537 protein SWALL:BAC52802 (EMBL:AP005962) (587 aa) fasta scores: E(): 2e-65, 34.16% id in 562 aa, and to Pasteurella multocida hypothetical protein Pm1072 SWALL:Q9CLX7 (EMBL:AE006148) (585 aa) fasta scores: E(): 4.2e-55, 33.39% id in 548 aa; ABC transporter ATP-binding protein 1451498..1453288 Pectobacterium atrosepticum SCRI1043 2882909 YP_049383.1 CDS ECA1277 NC_004547.2 1453350 1453721 R no significant database matches; hypothetical protein complement(1453350..1453721) Pectobacterium atrosepticum SCRI1043 2882757 YP_049384.1 CDS ECA1278 NC_004547.2 1453759 >1453977 R Partial CDS. Similar to the C-terminal regions several proteins including Methanosarcina acetivorans hypothetical protein Ma0995 SWALL:Q8TS12 (EMBL:AE010765) (251 aa) fasta scores: E(): 3.7e-12, 61.29% id in 62 aa, and to Bacillus halodurans hypothetical protein Bh0315 SWALL:Q9KG01 (EMBL:AP001508) (237 aa) fasta scores: E(): 2.9e-08, 49.2% id in 63 aa; hypothetical protein complement(1453759..>1453977) Pectobacterium atrosepticum SCRI1043 2882758 YP_049385.1 CDS ECA1279 NC_004547.2 1454201 1454428 D Similar to Agrobacterium tumefaciens hypothetical protein atu2406 or agr_c_4366 SWALL:Q8UCS7 (EMBL:AE009188) (85 aa) fasta scores: E(): 3.7e-16, 67.12% id in 73 aa, and to Ralstonia solanacearum hypothetical protein rsp1158 or rs05427 SWALL:Q8XQR3 (EMBL:AL646083) (82 aa) fasta scores: E(): 3.6e-15, 62.66% id in 75 aa; hypothetical protein 1454201..1454428 Pectobacterium atrosepticum SCRI1043 2882759 YP_049386.1 CDS ECA1280 NC_004547.2 1454597 1455214 D Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase 1454597..1455214 Pectobacterium atrosepticum SCRI1043 2882427 YP_049387.1 CDS ECA1281 NC_004547.2 1455488 1457158 D Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 5.4e-83, 51.52% id in 559 aa, and to Salmonella typhimurium methyl-accepting chemotaxis citrate transducer Tcp or stm3577 SWALL:MCPC_SALTY (SWALL:Q02755) (547 aa) fasta scores: E(): 6e-85, 53.86% id in 557 aa; methyl-accepting chemotaxis protein 1455488..1457158 Pectobacterium atrosepticum SCRI1043 2882428 YP_049388.1 CDS atoB NC_004547.2 1457257 1458435 R Similar to Clostridium acetobutylicum acetyl-CoA acetyltransferase ThlA or Thl or cac2873 SWALL:THLA_CLOAB (SWALL:P45359) (392 aa) fasta scores: E(): 9.5e-81, 59.48% id in 390 aa, and to Escherichia coli acetyl-CoA acetyltransferase AtoB or b2224 SWALL:ATOB_ECOLI (SWALL:P76461) (394 aa) fasta scores: E(): 1.2e-87, 64.01% id in 389 aa; acetyl-CoA acetyltransferase complement(1457257..1458435) Pectobacterium atrosepticum SCRI1043 2882887 YP_049389.1 CDS atoA NC_004547.2 1458447 1459094 R Similar to Escherichia coli acetate CoA-transferase beta subunit AtoA or b2222 SWALL:ATOA_ECOLI (SWALL:P76459) (216 aa) fasta scores: E(): 1.4e-54, 70.33% id in 209 aa, and to Clostridium acetobutylicum butyrate-acetoacetate CoA-transferase subunit B CtfB or cap0164 SWALL:CTFB_CLOAB (SWALL:P23673) (221 aa) fasta scores: E(): 2.6e-44, 57.2% id in 215 aa; acetate CoA-transferase subunit beta complement(1458447..1459094) Pectobacterium atrosepticum SCRI1043 2882886 YP_049390.1 CDS atoD NC_004547.2 1459094 1459750 R Similar to Escherichia coli acetate CoA-transferase alpha subunit AtoD or b2221 SWALL:ATOD_ECOLI (SWALL:P76458) (220 aa) fasta scores: E(): 3.9e-48, 61.46% id in 218 aa; acetyl-CoA:acetoacetyl-CoA transferase subunit alpha complement(1459094..1459750) Pectobacterium atrosepticum SCRI1043 2881653 YP_049391.1 CDS ECA1285 NC_004547.2 1459907 1460206 R Similar to the C-terminal regions of several hypothetical proteins including Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.9e-06, 37% id in 100 aa, and to Mycobacterium tuberculosis hypothetical protein rv0976c or mtv044.04c or mt1003.1 SWALL:O86320 (EMBL:Z79700) (560 aa) fasta scores: E(): 0.00068, 35.29% id in 85 aa; hypothetical protein complement(1459907..1460206) Pectobacterium atrosepticum SCRI1043 2882429 YP_049392.1 CDS ECA1286 NC_004547.2 1460206 1461546 R Similar to Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.4e-40, 34.88% id in 450 aa, and to Streptomyces coelicolor hypothetical protein sco4379 or scd10.11 SWALL:Q9K3W5 (EMBL:AL939119) (558 aa) fasta scores: E(): 2.3e-21, 34.24% id in 365 aa; hypothetical protein complement(1460206..1461546) Pectobacterium atrosepticum SCRI1043 2882430 YP_049393.1 CDS citM NC_004547.2 1461608 1462930 R Similar to Bacillus subtilis Mg(2+)/citrate complex secondary transporter CitM SWALL:CITM_BACSU (SWALL:P55069) (433 aa) fasta scores: E(): 7.6e-53, 40.76% id in 444 aa, and to Xylella fastidiosa Mg++/citrate complex transporter xf0320 SWALL:Q9PGI0 (EMBL:AE003885) (457 aa) fasta scores: E(): 1.1e-68, 41.83% id in 447 aa; Mg(2+)/citrate complex transporter complement(1461608..1462930) Pectobacterium atrosepticum SCRI1043 2884964 YP_049394.1 CDS ECA1288 NC_004547.2 1463404 1464303 D Similar to Pseudomonas putida transcriptional regulator, LysR family pp2054 SWALL:AAN67668 (EMBL:AE016781) (297 aa) fasta scores: E(): 6.5e-28, 33.33% id in 297 aa, and to Escherichia coli hypothetical transcriptional regulator ybhd or b0768 SWALL:YBHD_ECOLI (SWALL:P52696) (317 aa) fasta scores: E(): 1.6e-26, 28.17% id in 291 aa; LysR family transcriptional regulator 1463404..1464303 Pectobacterium atrosepticum SCRI1043 2881735 YP_049395.1 CDS ECA1289 NC_004547.2 1464367 1464558 R Similar to Yersinia pestis membrane protein ypo3055 SWALL:Q8ZCD6 (EMBL:AJ414155) (64 aa) fasta scores: E(): 1.4e-19, 73.84% id in 65 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein stm2484 or sty2722 SWALL:Q8XF02 (EMBL:AE008812) (66 aa) fasta scores: E(): 5.5e-17, 66.12% id in 62 aa; hypothetical protein complement(1464367..1464558) Pectobacterium atrosepticum SCRI1043 2881736 YP_049396.1 CDS ECA1290 NC_004547.2 1464561 1465232 R Similar to Yersinia pestis carboxypeptidase ypo3054 or y1426 SWALL:Q8ZCD7 (EMBL:AJ414155) (225 aa) fasta scores: E(): 1.8e-65, 68.34% id in 218 aa, and to Pasteurella multocida hypothetical protein Pm1021 SWALL:Q9CM23 (EMBL:AE006143) (228 aa) fasta scores: E(): 8.7e-46, 51.13% id in 221 aa; D-alanyl-D-alanine carboxypeptidase complement(1464561..1465232) Pectobacterium atrosepticum SCRI1043 2881737 YP_049397.1 CDS dapE NC_004547.2 1465232 1466359 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1465232..1466359) Pectobacterium atrosepticum SCRI1043 2885275 YP_049398.1 CDS ECA1292 NC_004547.2 1466361 1466738 R Similar to Escherichia coli protein yffb or b2471 SWALL:YFFB_ECOLI (SWALL:P24178) (118 aa) fasta scores: E(): 8e-24, 61.15% id in 121 aa, and to Yersinia pestis hypothetical protein ypo3052 or y1428 SWALL:Q8ZCD9 (EMBL:AJ414155) (132 aa) fasta scores: E(): 1.1e-27, 67.5% id in 120 aa; hypothetical protein complement(1466361..1466738) Pectobacterium atrosepticum SCRI1043 2881284 YP_049399.1 CDS ECA1293 NC_004547.2 1467197 1467907 R Similar to Yersinia pestis aspartate/glutamate racemase ypo2758 SWALL:Q8ZD34 (EMBL:AJ414153) (231 aa) fasta scores: E(): 2.5e-58, 67.54% id in 228 aa, and to Salmonella typhi hypothetical protein Sty3159 SWALL:Q8Z402 (EMBL:AL627277) (235 aa) fasta scores: E(): 1.6e-49, 55.89% id in 229 aa; aspartate/glutamate racemase complement(1467197..1467907) Pectobacterium atrosepticum SCRI1043 2881285 YP_049400.1 CDS cspE NC_004547.2 1468125 1468334 D member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 1468125..1468334 Pectobacterium atrosepticum SCRI1043 2883918 YP_049401.1 CDS crcB NC_004547.2 1468399 1468782 R Similar to Escherichia coli protein CrcB or b0624 SWALL:CRCB_ECOLI (SWALL:P37002) (127 aa) fasta scores: E(): 1.1e-26, 62.2% id in 127 aa, and to Yersinia pestis protein crcb homolog crcb or ypo2596 or y1168 SWALL:CRCB_YERPE (SWALL:Q8ZDH2) (127 aa) fasta scores: E(): 1.7e-27, 66.11% id in 121 aa; hypothetical protein complement(1468399..1468782) Pectobacterium atrosepticum SCRI1043 2884946 YP_049402.1 CDS tatE NC_004547.2 1469182 1469379 D TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a; twin argininte translocase protein A 1469182..1469379 Pectobacterium atrosepticum SCRI1043 2884314 YP_049403.1 CDS lipA NC_004547.2 1469462 1470427 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1469462..1470427) Pectobacterium atrosepticum SCRI1043 2883210 YP_049404.1 CDS lipB NC_004547.2 1470655 1471338 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(1470655..1471338) Pectobacterium atrosepticum SCRI1043 2883211 YP_049405.1 CDS ECA1299 NC_004547.2 1471487 1471750 R Similar to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein ybed or stm0636 or sty0687 SWALL:Q8XGV6 (EMBL:AE008725) (87 aa) fasta scores: E(): 4.9e-27, 88.5% id in 87 aa, and to Yersinia pestis hypothetical protein ypo2600 or y1174 SWALL:Q8ZDG8 (EMBL:AJ414153) (87 aa) fasta scores: E(): 5.8e-27, 85.05% id in 87 aa; hypothetical protein complement(1471487..1471750) Pectobacterium atrosepticum SCRI1043 2881286 YP_049406.1 CDS dacA NC_004547.2 1471888 1473099 R penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase fraction A complement(1471888..1473099) Pectobacterium atrosepticum SCRI1043 2881622 YP_049407.1 CDS rlpA NC_004547.2 1473265 1474380 R Similar to Escherichia coli rare lipoprotein A precursor RlpA or b0633 SWALL:RLPA_ECOLI (SWALL:P10100) (362 aa) fasta scores: E(): 8e-52, 50.94% id in 371 aa; rare lipoprotein A complement(1473265..1474380) Pectobacterium atrosepticum SCRI1043 2884718 YP_049408.1 CDS mrdB NC_004547.2 1474394 1475506 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri Rod shape-determining protein roda mrdb or roda or b0634 or z0780 or ecs0672 or sf0647 SWALL:RODA_ECOLI (SWALL:P15035) (370 aa) fasta scores: E(): 8.1e-122, 82.7% id in 370 aa; cell wall shape-determining protein complement(1474394..1475506) Pectobacterium atrosepticum SCRI1043 2882151 YP_049409.1 CDS mrdA NC_004547.2 1475516 1477420 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 penicillin-binding protein 2 MrdA or PbpA or b0635 or c0726 or z0781 or ecs0673 SWALL:PBP2_ECOLI (SWALL:P08150) (633 aa) fasta scores: E(): 5.9e-203, 79.74% id in 632 aa; penicillin-binding protein 2 complement(1475516..1477420) Pectobacterium atrosepticum SCRI1043 2882046 YP_049410.1 CDS ECA1304 NC_004547.2 1477454 1477924 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(1477454..1477924) Pectobacterium atrosepticum SCRI1043 2882101 YP_049411.1 CDS ECA1305 NC_004547.2 1477926 1478243 R Similar to Salmonella typhimurium, and Salmonella typhi Acr, homolog of plant IojaP protein ybeb or stm0642 or sty0693 SWALL:Q8XF37 (EMBL:AE008725) (105 aa) fasta scores: E(): 2.7e-33, 83.65% id in 104 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ybeb or b0637 or c0728 or sf0644 SWALL:YBEB_ECOLI (SWALL:P05848) (105 aa) fasta scores: E(): 9.2e-33, 82.69% id in 104 aa; hypothetical protein complement(1477926..1478243) Pectobacterium atrosepticum SCRI1043 2882102 YP_049412.1 CDS nadD NC_004547.2 1478437 1479078 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(1478437..1479078) Pectobacterium atrosepticum SCRI1043 2885135 YP_049413.1 CDS holA NC_004547.2 1479093 1480118 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1479093..1480118) Pectobacterium atrosepticum SCRI1043 2882076 YP_049414.1 CDS rlpB NC_004547.2 1480115 1480669 R rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB complement(1480115..1480669) Pectobacterium atrosepticum SCRI1043 2884719 YP_049415.1 CDS leuS NC_004547.2 1480684 1483266 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1480684..1483266) Pectobacterium atrosepticum SCRI1043 2883434 YP_049416.1 CDS ECA1310 NC_004547.2 1483576 1484058 D Similar to Yersinia pestis hypothetical protein Ypo2611 SWALL:Q8ZDF7 (EMBL:AJ414153) (160 aa) fasta scores: E(): 3.3e-46, 76.87% id in 160 aa, and to Salmonella typhimurium cytoplasmic protein ybel or stm0653 SWALL:Q8ZQZ2 (EMBL:AE008726) (157 aa) fasta scores: E(): 2.3e-42, 71.25% id in 160 aa; hypothetical protein 1483576..1484058 Pectobacterium atrosepticum SCRI1043 2882103 YP_049417.1 CDS gltL NC_004547.2 1484115 1484840 R Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 4.5e-73, 87.55% id in 241 aa; glutamate/aspartate transport ATP-binding protein complement(1484115..1484840) Pectobacterium atrosepticum SCRI1043 2882106 YP_049418.1 CDS gltK NC_004547.2 1484840 1485514 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glutamate/aspartate transport system permease protein GltK or b0653 or c0737 or z0803 or ecs0692 SWALL:GLTK_ECOLI (SWALL:P41075) (224 aa) fasta scores: E(): 2.2e-73, 84.75% id in 223 aa; glutamate/aspartate transport system permease complement(1484840..1485514) Pectobacterium atrosepticum SCRI1043 2882105 YP_049419.1 CDS gltJ NC_004547.2 1485518 1486258 R Similar to Escherichia coli, and Escherichia coli O6 glutamate/aspartate transport system permease protein GltJ or b0654 or c0738 SWALL:GLTJ_ECOLI (SWALL:P41074) (246 aa) fasta scores: E(): 5.8e-85, 88.61% id in 246 aa; glutamate/aspartate transport system permease complement(1485518..1486258) Pectobacterium atrosepticum SCRI1043 2882038 YP_049420.1 CDS gltI NC_004547.2 1486479 1487375 R Similar to Escherichia coli glutamate/aspartate periplasmic binding protein precursor HltI or b0655 SWALL:GLTI_ECOLI (SWALL:P37902) (302 aa) fasta scores: E(): 1.5e-88, 78.8% id in 302 aa; glutamate and aspartate transporter subunit complement(1486479..1487375) Pectobacterium atrosepticum SCRI1043 2882037 YP_049421.1 CDS lnt NC_004547.2 1487825 1489354 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(1487825..1489354) Pectobacterium atrosepticum SCRI1043 2883040 YP_049422.1 CDS corC NC_004547.2 1489362 1490240 R Similar to Salmonella typhimurium, and Salmonella typhi magnesium and cobalt efflux protein CorC or stm0667 or sty0712 SWALL:CORC_SALTY (SWALL:Q9R874) (292 aa) fasta scores: E(): 1.5e-92, 85.95% id in 292 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri magnesium and cobalt efflux protein CorC or b0658 or c0743 or z0807 or ecs0696 or sf0624 SWALL:CORC_ECOLI (SWALL:P77392) (292 aa) fasta scores: E(): 2.6e-92, 85.61% id in 292 aa; magnesium and cobalt efflux protein corc complement(1489362..1490240) Pectobacterium atrosepticum SCRI1043 2884951 YP_049423.1 CDS ECA1317 NC_004547.2 1490492 1490971 R Similar to Yersinia pestis hypothetical protein ypo2618 or y1193 SWALL:YQ18_YERPE (SWALL:Q8ZDF0) (157 aa) fasta scores: E(): 5.2e-49, 80.64% id in 155 aa, and to Salmonella typhi hypothetical protein ybey or sty0714 SWALL:YBEY_SALTI (SWALL:Q8Z8G6) (157 aa) fasta scores: E(): 2.1e-48, 79.87% id in 154 aa; metalloprotease complement(1490492..1490971) Pectobacterium atrosepticum SCRI1043 2882195 YP_049424.1 CDS ECA1318 NC_004547.2 1490968 1492026 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PhoH-like protein ybez or b0660 or c0745 or z0809 or ecs0698 or sf0622 SWALL:PHOL_ECOLI (SWALL:P77349) (359 aa) fasta scores: E(): 3.2e-109, 88.92% id in 343 aa, and to Yersinia pestis hypothetical protein ypo2619 or y1194 SWALL:AAM84771 (EMBL:AJ414153) (370 aa) fasta scores: E(): 8.5e-110, 88.33% id in 343 aa; PhoH-like ATP-binding protein complement(1490968..1492026) Pectobacterium atrosepticum SCRI1043 2882196 YP_049425.1 CDS ECA1319 NC_004547.2 1492350 1493774 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ylea or b0661 or c0747 or z0810 or ecs0699 SWALL:YLEA_ECOLI (SWALL:P77645) (474 aa) fasta scores: E(): 2.5e-163, 86.28% id in 474 aa, and to Salmonella typhimurium miab protein miab or stm0670 SWALL:Q9RCI2 (EMBL:AJ249116) (474 aa) fasta scores: E(): 7.8e-163, 86.07% id in 474 aa; hypothetical protein complement(1492350..1493774) Pectobacterium atrosepticum SCRI1043 2882197 YP_049426.1 CDS ubiF NC_004547.2 1494007 1495173 D catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1494007..1495173 Pectobacterium atrosepticum SCRI1043 2884215 YP_049427.1 CDS ECA1321 NC_004547.2 1495196 1495876 R Weakly similar to Vibrio vulnificus hypothetical protein vv12006 SWALL:AAO10403 (EMBL:AE016803) (381 aa) fasta scores: E(): 1.9, 23.52% id in 170 aa; hypothetical protein complement(1495196..1495876) Pectobacterium atrosepticum SCRI1043 2881531 YP_049428.1 CDS ECA1322 NC_004547.2 1495947 1496435 R no significant database matches; hypothetical protein complement(1495947..1496435) Pectobacterium atrosepticum SCRI1043 2881532 YP_049429.1 CDS asnB NC_004547.2 1497427 1499091 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(1497427..1499091) Pectobacterium atrosepticum SCRI1043 2884105 YP_049430.1 CDS nagC NC_004547.2 1499295 1500518 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri N-acetylglucosamine repressor NagC or NagR or b0676 or c0751 or z0823 or ecs0706 or sf0617 SWALL:NAGC_ECOLI (SWALL:P15301) (406 aa) fasta scores: E(): 7.3e-114, 74.87% id in 406 aa; N-acetylglucosamine repressor complement(1499295..1500518) Pectobacterium atrosepticum SCRI1043 2884908 YP_049431.1 CDS nagA NC_004547.2 1500630 1501778 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(1500630..1501778) Pectobacterium atrosepticum SCRI1043 2884928 YP_049432.1 CDS nagB NC_004547.2 1501795 1502595 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(1501795..1502595) Pectobacterium atrosepticum SCRI1043 2884907 YP_049433.1 CDS nagE NC_004547.2 1502956 1504452 D Similar to Escherichia coli PTS system, N-acetylglucosamine-specific IIABC component NagE or pPstN or b0679 SWALL:PTAA_ECOLI (SWALL:P09323) (648 aa) fasta scores: E(): 7.8e-62, 45.16% id in 496 aa; PTS system N-acetylglucosamine-specific transporter subunit IIABC 1502956..1504452 Pectobacterium atrosepticum SCRI1043 2884909 YP_049434.1 CDS glnS NC_004547.2 1504627 1506285 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1504627..1506285 Pectobacterium atrosepticum SCRI1043 2881330 YP_049435.1 CDS fur NC_004547.2 1506349 1506798 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(1506349..1506798) Pectobacterium atrosepticum SCRI1043 2883460 YP_049436.1 CDS fldA NC_004547.2 1507128 1507655 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(1507128..1507655) Pectobacterium atrosepticum SCRI1043 2881792 YP_049437.1 CDS ECA1331 NC_004547.2 1508259 1508435 D no significant database matches; hypothetical protein 1508259..1508435 Pectobacterium atrosepticum SCRI1043 2881533 YP_049438.1 CDS ECA1332 NC_004547.2 1508540 1510207 D Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 6.3e-68, 46.49% id in 570 aa; methyl-accepting chemotaxis protein 1508540..1510207 Pectobacterium atrosepticum SCRI1043 2881534 YP_049439.1 CDS ECA1333 NC_004547.2 1510323 1510604 R Similar to Yersinia pestis hypothetical protein ypo2637 or y1211 SWALL:AAM84787 (EMBL:AJ414153) (95 aa) fasta scores: E(): 2e-28, 92.39% id in 92 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ybfe or b0685 or z0834 or ecs0716 or sf0608 SWALL:YBFE_ECOLI (SWALL:P75735) (120 aa) fasta scores: E(): 5.4e-25, 81.72% id in 93 aa; LexA regulated protein complement(1510323..1510604) Pectobacterium atrosepticum SCRI1043 2881296 YP_049440.1 CDS ECA1334 NC_004547.2 1510897 1511664 R Similar to Escherichia coli esterase/lipase ybff or b0686 SWALL:YBFF_ECOLI (SWALL:P75736) (254 aa) fasta scores: E(): 5.2e-69, 67.58% id in 253 aa; hypothetical protein complement(1510897..1511664) Pectobacterium atrosepticum SCRI1043 2881297 YP_049441.1 CDS seqA NC_004547.2 1511938 1512474 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 1511938..1512474 Pectobacterium atrosepticum SCRI1043 2884407 YP_049442.1 CDS pgm NC_004547.2 1512651 1514294 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1512651..1514294 Pectobacterium atrosepticum SCRI1043 2884905 YP_049443.1 CDS ECA1337 NC_004547.2 1514357 1514785 R Similar to Yersinia pestis membrane protein ypo2687 or y1260 SWALL:Q8ZDA1 (EMBL:AJ414153) (142 aa) fasta scores: E(): 2.3e-37, 80.28% id in 142 aa, and to Pyrococcus abyssi hypothetical protein pyrab09950 or pab0665 SWALL:Q9V003 (EMBL:AJ248286) (137 aa) fasta scores: E(): 3.6e-20, 52.48% id in 141 aa; hypothetical protein complement(1514357..1514785) Pectobacterium atrosepticum SCRI1043 2881298 YP_049444.1 CDS kdpE NC_004547.2 1514879 1515559 R response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE complement(1514879..1515559) Pectobacterium atrosepticum SCRI1043 2884849 YP_049445.1 CDS kdpD NC_004547.2 1515565 1518297 R sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD complement(1515565..1518297) Pectobacterium atrosepticum SCRI1043 2884848 YP_049446.1 CDS kdpC NC_004547.2 1518525 1519100 R Similar to Escherichia coli potassium-transporting ATPase c chain KdpC or b0696 SWALL:ATKC_ECOLI (SWALL:P03961) (190 aa) fasta scores: E(): 3.1e-32, 55.08% id in 187 aa; potassium-transporting ATPase subunit C complement(1518525..1519100) Pectobacterium atrosepticum SCRI1043 2884847 YP_049447.1 CDS kdpB NC_004547.2 1519120 1521264 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(1519120..1521264) Pectobacterium atrosepticum SCRI1043 2884846 YP_049448.1 CDS kdpA NC_004547.2 1521280 1522968 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(1521280..1522968) Pectobacterium atrosepticum SCRI1043 2884868 YP_049449.1 CDS ECA1343 NC_004547.2 1522968 1523204 R Similar to Escherichia coli O6 hypothetical protein c0784 SWALL:AAN79257 (EMBL:AE016757) (67 aa) fasta scores: E(): 4.9e-06, 52.38% id in 63 aa, and to Staphylococcus aureus membrane protein SWALL:O87363 (EMBL:AF051917) (77 aa) fasta scores: E(): 2.9, 28.37% id in 74 aa; hypothetical protein complement(1522968..1523204) Pectobacterium atrosepticum SCRI1043 2882529 YP_049450.1 CDS ECA1344 NC_004547.2 1523468 1523674 D Similar to Yersinia pestis membrane protein ypo2693 SWALL:Q8ZD95 (EMBL:AJ414153) (68 aa) fasta scores: E(): 4.2e-22, 73.52% id in 68 aa, and to Salmonella typhimurium periplasmic protein ybfa or stm0708 SWALL:Q8ZQV9 (EMBL:AE008728) (68 aa) fasta scores: E(): 3.2e-20, 72.05% id in 68 aa; hypothetical protein 1523468..1523674 Pectobacterium atrosepticum SCRI1043 2882530 YP_049451.1 CDS ECA1345 NC_004547.2 1523818 1525473 R Similar to Actinobacillus pleuropneumoniae ferric transport system permease protein AfuB SWALL:AFUB_ACTPL (SWALL:Q44123) (687 aa) fasta scores: E(): 2e-26, 24.36% id in 550 aa, and to Pasteurella multocida AfuB afub_2 or pm1455 SWALL:Q9CKZ5 (EMBL:AE006182) (564 aa) fasta scores: E(): 5.6e-41, 28.39% id in 553 aa; ABC transporter permease complement(1523818..1525473) Pectobacterium atrosepticum SCRI1043 2882531 YP_049452.1 CDS ECA1346 NC_004547.2 1525674 1526654 R Similar to Rhizobium meliloti periplasmic iron-binding protein AfuA or r02056 or smc04317 SWALL:Q9Z3S7 (EMBL:AF030523) (326 aa) fasta scores: E(): 2e-23, 33.12% id in 326 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu2014 or agr_c_3652 SWALL:Q8UDV5 (EMBL:AE009153) (327 aa) fasta scores: E(): 8.6e-22, 30.93% id in 320 aa; ABC transporter substrate binding protein complement(1525674..1526654) Pectobacterium atrosepticum SCRI1043 2881515 YP_049453.1 CDS ECA1347 NC_004547.2 1526672 1527400 R Similar to Synechococcus elongatus ABC transporter ATP-binding protein tll1492 SWALL:BAC09044 (EMBL:AP005374) (373 aa) fasta scores: E(): 5.2e-35, 50.21% id in 233 aa, and to Bradyrhizobium japonicum ABC transporter ATP-binding protein bll7196 SWALL:BAC52461 (EMBL:AP005961) (365 aa) fasta scores: E(): 7.6e-35, 47.52% id in 242 aa; ABC transporter ATP-binding protein complement(1526672..1527400) Pectobacterium atrosepticum SCRI1043 2881516 YP_049454.1 CDS ECA1348 NC_004547.2 1527781 1528740 D Similar to Salmonella typhi pathogenicity island protein sty1731 SWALL:Q8Z6K7 (EMBL:AL627271) (319 aa) fasta scores: E(): 2.5e-75, 58.9% id in 309 aa, and to Salmonella typhimurium orf 319 protein orf319 or stm1389 SWALL:Q9Z4T2 (EMBL:AJ224978) (319 aa) fasta scores: E(): 2.5e-75, 58.9% id in 309 aa; hypothetical protein 1527781..1528740 Pectobacterium atrosepticum SCRI1043 2881517 YP_049455.1 CDS phrB NC_004547.2 1528762 1530255 D UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 1528762..1530255 Pectobacterium atrosepticum SCRI1043 2883690 YP_049456.1 CDS ECA1350 NC_004547.2 1530248 1530991 D Similar to Yersinia pestis hypothetical protein ypo2697 or y1272 SWALL:YQ97_YERPE (SWALL:Q8ZD91) (247 aa) fasta scores: E(): 1.6e-77, 76.92% id in 247 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical protein ybgi or stm0711 or sty0751 SWALL:YBGI_SALTY (SWALL:Q8XFW7) (247 aa) fasta scores: E(): 1.1e-71, 72.06% id in 247 aa; hydrolase-oxidase 1530248..1530991 Pectobacterium atrosepticum SCRI1043 2882160 YP_049457.1 CDS ECA1351 NC_004547.2 1531148 1531804 D Similar to Salmonella typhimurium carboxylase ybgj or stm0712 SWALL:Q8ZQV8 (EMBL:AE008729) (218 aa) fasta scores: E(): 1.1e-61, 72.93% id in 218 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ybgj or b0711 or z0862 or ecs0736 SWALL:YBGJ_ECOLI (SWALL:P75744) (218 aa) fasta scores: E(): 2.3e-60, 71.56% id in 218 aa; allophanate hydrolase subunit 1 1531148..1531804 Pectobacterium atrosepticum SCRI1043 2882161 YP_049458.1 CDS ECA1352 NC_004547.2 1531798 1532742 D Similar to Yersinia pestis hypothetical protein ypo2699 ypo2699 or y1275 SWALL:AAM84849 (EMBL:AJ414153) (316 aa) fasta scores: E(): 3.6e-83, 69.13% id in 311 aa, and to Escherichia coli hypothetical protein ybgk ybgk or b0712 SWALL:YBGK_ECOLI (SWALL:P75745) (310 aa) fasta scores: E(): 2.6e-79, 64.21% id in 313 aa; allophanate hydrolase subunit 2 1531798..1532742 Pectobacterium atrosepticum SCRI1043 2882162 YP_049459.1 CDS ECA1353 NC_004547.2 1532732 1533469 D Similar to Yersinia pestis hypothetical protein Ypo2700 SWALL:Q8ZD89 (EMBL:AJ414153) (245 aa) fasta scores: E(): 8e-68, 73.77% id in 244 aa, and to Shigella flexneri lactam utilization protein ybgl or sf0584 SWALL:AAN42227 (EMBL:AE015089) (244 aa) fasta scores: E(): 1e-59, 66.8% id in 244 aa; LamB/YcsF family protein 1532732..1533469 Pectobacterium atrosepticum SCRI1043 2881243 YP_049460.1 CDS pcp NC_004547.2 1533499 1534146 D Similar to Pseudomonas fluorescens pyrrolidone-carboxylate peptidase Pcp SWALL:PCP_PSEFL (SWALL:P42673) (213 aa) fasta scores: E(): 3.4e-37, 53.99% id in 213 aa, and to Bacillus amyloliquefaciens pyrrolidone-carboxylate peptidase Pcp SWALL:PCP_BACAM (SWALL:P46107) (215 aa) fasta scores: E(): 2.6e-36, 48.13% id in 214 aa; pyrrolidone-carboxylate peptidase 1533499..1534146 Pectobacterium atrosepticum SCRI1043 2881376 YP_049461.1 CDS nei NC_004547.2 1534199 1534990 D 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 1534199..1534990 Pectobacterium atrosepticum SCRI1043 2885656 YP_049462.1 CDS gltA NC_004547.2 1535069 1536355 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(1535069..1536355) Pectobacterium atrosepticum SCRI1043 2881964 YP_049463.1 CDS sdhC NC_004547.2 1537007 1537396 D Similar to Escherichia coli, and Escherichia coli O157:H7 succinate dehydrogenase cytochrome b-556 subunit SdhC or CybA or b0721 or z0875 or ecs0746 SWALL:DHSC_ECOLI (SWALL:P10446) (129 aa) fasta scores: E(): 1.1e-38, 79.06% id in 129 aa; succinate dehydrogenase cytochrome b556 large membrane subunit 1537007..1537396 Pectobacterium atrosepticum SCRI1043 2884415 YP_049464.1 CDS sdhD NC_004547.2 1537390 1537737 D Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri succinate dehydrogenase hydrophobic membrane anchor protein SdhD or b0722 or c0800 or sf0575 SWALL:DHSD_ECOLI (SWALL:P10445) (115 aa) fasta scores: E(): 2.2e-34, 77.19% id in 114 aa; succinate dehydrogenase cytochrome b556 small membrane subunit 1537390..1537737 Pectobacterium atrosepticum SCRI1043 2884416 YP_049465.1 CDS sdhA NC_004547.2 1537737 1539503 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1537737..1539503 Pectobacterium atrosepticum SCRI1043 2884419 YP_049466.1 CDS sdhB NC_004547.2 1539520 1540236 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1539520..1540236 Pectobacterium atrosepticum SCRI1043 2884414 YP_049467.1 CDS sucA NC_004547.2 1540513 1543320 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 1540513..1543320 Pectobacterium atrosepticum SCRI1043 2884343 YP_049468.1 CDS sucB NC_004547.2 1543336 1544562 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1543336..1544562 Pectobacterium atrosepticum SCRI1043 2884338 YP_049469.1 CDS sucC NC_004547.2 1544898 1546064 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1544898..1546064 Pectobacterium atrosepticum SCRI1043 2884339 YP_049470.1 CDS sucD NC_004547.2 1546064 1546936 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1546064..1546936 Pectobacterium atrosepticum SCRI1043 2884340 YP_049471.1 CDS cydA1 NC_004547.2 1547669 1549237 D Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome D ubiquinol oxidase subunit I CydA or Cyd-1 or b0733 or c0811 or sf0564 SWALL:CYDA_ECOLI (SWALL:P11026) (522 aa) fasta scores: E(): 2.3e-178, 83.9% id in 522 aa; cytochrome D ubiquinol oxidase subunit I 1547669..1549237 Pectobacterium atrosepticum SCRI1043 2883099 YP_049472.1 CDS cydB1 NC_004547.2 1549251 1550390 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome D ubiquinol oxidase subunit II CydB or Cyd-2 or b0734 or c0812 or z0901 or ecs0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 4.4e-123, 80.21% id in 379 aa; cytochrome D ubiquinol oxidase subunit II 1549251..1550390 Pectobacterium atrosepticum SCRI1043 2883050 YP_049473.1 CDS ECA1367 NC_004547.2 1550407 1550523 D Similar to Erwinia chrysanthemi YbgT protein SWALL:Q937K9 (EMBL:AJ297885) (38 aa) fasta scores: E(): 3.5e-11, 76.31% id in 38 aa, and to Escherichia coli protein YbgT or b0734.1 SWALL:YBGT_ECOLI (SWALL:P56100) (37 aa) fasta scores: E(): 2.5e-10, 75% id in 36 aa; hypothetical protein 1550407..1550523 Pectobacterium atrosepticum SCRI1043 2881244 YP_049474.1 CDS ECA1368 NC_004547.2 1550520 1550813 D Similar to Erwinia chrysanthemi YbgE protein SWALL:Q937K8 (EMBL:AJ297885) (97 aa) fasta scores: E(): 1.7e-31, 79.16% id in 96 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri protein YbgE or b0735 or c0814 or z0903 or ecs0770 or sf0562 SWALL:YBGE_ECOLI (SWALL:P37343) (97 aa) fasta scores: E(): 4.2e-26, 63.54% id in 96 aa; hypothetical protein 1550520..1550813 Pectobacterium atrosepticum SCRI1043 2881245 YP_049475.1 CDS ECA1369 NC_004547.2 1550947 1551351 D catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase 1550947..1551351 Pectobacterium atrosepticum SCRI1043 2881246 YP_049476.1 CDS tolQ NC_004547.2 1551348 1552034 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 1551348..1552034 Pectobacterium atrosepticum SCRI1043 2884263 YP_049477.1 CDS tolR NC_004547.2 1552047 1552472 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 1552047..1552472 Pectobacterium atrosepticum SCRI1043 2884264 YP_049478.1 CDS tolA NC_004547.2 1552537 1553724 D inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 1552537..1553724 Pectobacterium atrosepticum SCRI1043 2884266 YP_049479.1 CDS tolB NC_004547.2 1553863 1555155 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1553863..1555155 Pectobacterium atrosepticum SCRI1043 2884267 YP_049480.1 CDS pal NC_004547.2 1555196 1555705 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri peptidoglycan-associated lipoprotein precursor pal or excc or b0741 or z0909 or ecs0776 or sf0556 SWALL:PAL_ECOLI (SWALL:P07176) (173 aa) fasta scores: E(): 3.1e-50, 81.5% id in 173 aa; peptidoglycan-associated outer membrane lipoprotein 1555196..1555705 Pectobacterium atrosepticum SCRI1043 2881734 YP_049481.1 CDS ECA1375 NC_004547.2 1555715 1556491 D periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 1555715..1556491 Pectobacterium atrosepticum SCRI1043 2881307 YP_049482.1 CDS ECA1376 NC_004547.2 1557428 1558144 D Similar to Shigella flexneri transport protein yqga or sf2963 SWALL:AAN44444 (EMBL:AE015309) (235 aa) fasta scores: E(): 1.5e-36, 45.79% id in 238 aa, and to Escherichia coli hypothetical protein yqga or b2966 SWALL:YQGA_ECOLI (SWALL:Q46831) (235 aa) fasta scores: E(): 2.3e-36, 45.79% id in 238 aa; hypothetical protein 1557428..1558144 Pectobacterium atrosepticum SCRI1043 2881308 YP_049483.1 CDS ECA1377 NC_004547.2 1558159 1558557 R Similar to Escherichia coli hypothetical protein yjaa or b4011 SWALL:YJAA_ECOLI (SWALL:P09162) (127 aa) fasta scores: E(): 2.2e-05, 28.57% id in 126 aa, and to Yersinia pestis membrane protein ypo0760 or y3434 SWALL:AAM86983 (EMBL:AJ414144) (137 aa) fasta scores: E(): 0.00023, 32.79% id in 125 aa; hypothetical protein complement(1558159..1558557) Pectobacterium atrosepticum SCRI1043 2881309 YP_049484.1 CDS nadA NC_004547.2 1558773 1559834 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1558773..1559834 Pectobacterium atrosepticum SCRI1043 2885165 YP_049485.1 CDS pnuC NC_004547.2 1559893 1560618 D Similar to Escherichia coli, and Shigella flexneri protein PnuC or b0751 or sf0553 SWALL:PNUC_ECOLI (SWALL:P31215) (239 aa) fasta scores: E(): 2.9e-72, 73.64% id in 239 aa, and to Salmonella typhimurium protein PnuC or stm0757 SWALL:PNUC_SALTY (SWALL:P24520) (239 aa) fasta scores: E(): 3e-74, 76.05% id in 238 aa; nicotinamide mononucleotide transport protein 1559893..1560618 Pectobacterium atrosepticum SCRI1043 2883188 YP_049486.1 CDS zitB NC_004547.2 1560626 1561588 R involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB complement(1560626..1561588) Pectobacterium atrosepticum SCRI1043 2882479 YP_049487.1 CDS aroG NC_004547.2 1561884 1562939 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1561884..1562939 Pectobacterium atrosepticum SCRI1043 2884130 YP_049488.1 CDS gpmA NC_004547.2 1563014 1563766 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(1563014..1563766) Pectobacterium atrosepticum SCRI1043 2885502 YP_049489.1 CDS cusA NC_004547.2 1563904 1567041 R Similar to Escherichia coli cation efflux system protein CusA or b0575 SWALL:CUSA_ECOLI (SWALL:P38054) (1047 aa) fasta scores: E(): 0, 65.54% id in 1042 aa; cation efflux system protein complement(1563904..1567041) Pectobacterium atrosepticum SCRI1043 2883446 YP_049490.1 CDS cusB NC_004547.2 1567038 1568519 R Similar to Escherichia coli copper efflux system protein CusB precursor CusB or b0574 SWALL:CUSB_ECOLI (SWALL:P77239) (407 aa) fasta scores: E(): 8.2e-44, 37.94% id in 398 aa; copper efflux system protein complement(1567038..1568519) Pectobacterium atrosepticum SCRI1043 2883447 YP_049491.1 CDS ECA1385 NC_004547.2 1568546 1569805 R Similar to Alcaligenes eutrophus nickel and cobalt resistance protein CnrC precursor SWALL:CNRC_ALCEU (SWALL:P37974) (418 aa) fasta scores: E(): 1.4e-05, 23.51% id in 404 aa, and to Pseudomonas putida heavy metal Rnd efflux outer membrane protein, czcc family pp5385 SWALL:AAN70950 (EMBL:AE016794) (417 aa) fasta scores: E(): 1.5e-28, 32.61% id in 417 aa; hypothetical protein complement(1568546..1569805) Pectobacterium atrosepticum SCRI1043 2885267 YP_049492.1 CDS ECA1386 NC_004547.2 1569818 1570168 R Similar to Escherichia coli hypothetical protein CusX precursor CusX or b0573 SWALL:CUSX_ECOLI (SWALL:P77214) (110 aa) fasta scores: E(): 1.5e-06, 35.13% id in 111 aa, and to Shigella flexneri orf, conserved hypothetical protein ylcc or sf0474 SWALL:AAN42127 (EMBL:AE015079) (110 aa) fasta scores: E(): 1.5e-06, 35.13% id in 111 aa; hypothetical protein complement(1569818..1570168) Pectobacterium atrosepticum SCRI1043 2885268 YP_049493.1 CDS ECA1387 NC_004547.2 1570244 1570696 R Similar to Ralstonia solanacearum hypothetical transmembrane protein rsp0925 or rs05408 SWALL:Q8XRD3 (EMBL:AL646081) (136 aa) fasta scores: E(): 0.11, 26.57% id in 143 aa; hypothetical protein complement(1570244..1570696) Pectobacterium atrosepticum SCRI1043 2885269 YP_049494.1 CDS galM NC_004547.2 1570848 1571894 R catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase complement(1570848..1571894) Pectobacterium atrosepticum SCRI1043 2883097 YP_049495.1 CDS galE NC_004547.2 1572017 1573036 R Similar to Escherichia coli udp-glucose 4-epimerase GalE or GalD or b0759 SWALL:GALE_ECOLI (SWALL:P09147) (338 aa) fasta scores: E(): 5.5e-102, 76.03% id in 338 aa; UDP-galactose-4-epimerase complement(1572017..1573036) Pectobacterium atrosepticum SCRI1043 2883164 YP_049496.1 CDS modF NC_004547.2 1573235 1574710 R contains 2 ATP-binding cassettes; involved in the transport of molybdenum; molybdenum transport ATP-binding protein ModF complement(1573235..1574710) Pectobacterium atrosepticum SCRI1043 2881249 YP_049497.1 CDS modE NC_004547.2 1574770 1575561 R represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE complement(1574770..1575561) Pectobacterium atrosepticum SCRI1043 2881248 YP_049498.1 CDS ECA1392 NC_004547.2 1575643 1575957 R no significant database matches; hypothetical protein complement(1575643..1575957) Pectobacterium atrosepticum SCRI1043 2885808 YP_049499.1 CDS modA NC_004547.2 1576123 1576893 D with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 1576123..1576893 Pectobacterium atrosepticum SCRI1043 2885451 YP_049500.1 CDS modB NC_004547.2 1576893 1577582 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 1576893..1577582 Pectobacterium atrosepticum SCRI1043 2885452 YP_049501.1 CDS modC NC_004547.2 1577582 1578640 D Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 1577582..1578640 Pectobacterium atrosepticum SCRI1043 2881247 YP_049502.1 CDS ECA1396 NC_004547.2 1578878 1579741 D Similar to Agrobacterium tumefaciens hypothetical protein atu4376 or agr_l_982 SWALL:Q8U7S3 (EMBL:AE009366) (284 aa) fasta scores: E(): 2e-44, 43.5% id in 285 aa, and to Rhizobium meliloti hypothetical protein r01924 or smc04254 SWALL:Q92P69 (EMBL:AL591788) (253 aa) fasta scores: E(): 6.9e-22, 32.63% id in 239 aa; hypothetical protein 1578878..1579741 Pectobacterium atrosepticum SCRI1043 2885809 YP_049503.1 CDS ECA1397 NC_004547.2 1579820 1580800 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribose operon repressor RbsR or b3753 or c4681 or z5254 or ecs4695 or sf3836 SWALL:RBSR_ECOLI (SWALL:P25551) (329 aa) fasta scores: E(): 6.6e-29, 32.82% id in 329 aa, and to Thermoanaerobacter tengcongensis transcriptional regulator PurR8 or tte1952 SWALL:Q8R8P3 (EMBL:AE013146) (331 aa) fasta scores: E(): 1.5e-43, 41.28% id in 327 aa; LacI family transcriptional regulator complement(1579820..1580800) Pectobacterium atrosepticum SCRI1043 2885810 YP_049504.1 CDS ECA1398 NC_004547.2 1580925 1582076 R Similar to Bacillus halodurans hypothetical protein Bh0710 bh0710 SWALL:Q9KEY9 (EMBL:AP001509) (388 aa) fasta scores: E(): 9e-27, 28.78% id in 396 aa, and to Streptomyces coelicolor oxidoreductase sco6988 or sc8f11.14C SWALL:Q9KZG4 (EMBL:AL939129) (387 aa) fasta scores: E(): 1e-20, 29.23% id in 390 aa; oxidoreductase complement(1580925..1582076) Pectobacterium atrosepticum SCRI1043 2885143 YP_049505.1 CDS ECA1399 NC_004547.2 1582073 1583143 R Similar to Agrobacterium tumefaciens hypothetical protein atu4374 or agr_l_986 SWALL:Q8U7S5 (EMBL:AE009366) (349 aa) fasta scores: E(): 4.3e-104, 67.42% id in 350 aa, and to Caulobacter crescentus hypothetical protein Cc1631 SWALL:Q9A7T9 (EMBL:AE005838) (351 aa) fasta scores: E(): 5.1e-102, 68.09% id in 351 aa; hypothetical protein complement(1582073..1583143) Pectobacterium atrosepticum SCRI1043 2885144 YP_049506.1 CDS ECA1400 NC_004547.2 1583277 1584521 R Similar to Escherichia coli nucleoside transporter YegT or b2098 SWALL:YEGT_ECOLI (SWALL:P76417) (425 aa) fasta scores: E(): 7e-56, 38.47% id in 408 aa, and to Salmonella typhimurium, and Salmonella typhi mfs family transport protein YegT or stm2142 or sty2371 SWALL:Q8XEM8 (EMBL:AE008795) (423 aa) fasta scores: E(): 1.1e-55, 39.11% id in 409 aa; nucleoside H+ symporter complement(1583277..1584521) Pectobacterium atrosepticum SCRI1043 2885145 YP_049507.1 CDS glk NC_004547.2 1584709 1585674 D catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1584709..1585674 Pectobacterium atrosepticum SCRI1043 2881758 YP_049508.1 CDS ECA1402 NC_004547.2 1585757 1586578 R YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily; phosphotransferase complement(1585757..1586578) Pectobacterium atrosepticum SCRI1043 2884853 YP_049509.1 CDS ECA1403 NC_004547.2 1587226 1588224 D catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 1587226..1588224 Pectobacterium atrosepticum SCRI1043 2884854 YP_049510.1 CDS ECA1404 NC_004547.2 1588340 1589590 R Similar to Yersinia pestis hypothetical protein ypo1516 or y2652 SWALL:Q8ZG04 (EMBL:AJ414148) (418 aa) fasta scores: E(): 7e-158, 89.53% id in 411 aa, and to Bradyrhizobium japonicum Bll5694 protein bll5694 SWALL:BAC50959 (EMBL:AP005955) (441 aa) fasta scores: E(): 1e-80, 46.95% id in 411 aa; hypothetical protein complement(1588340..1589590) Pectobacterium atrosepticum SCRI1043 2884855 YP_049511.1 CDS ECA1405 NC_004547.2 1589605 1590681 R Similar to Yersinia pestis sugar ABC transporter ypo1517 or y2651 SWALL:Q8ZG03 (EMBL:AJ414148) (363 aa) fasta scores: E(): 3.6e-111, 84.07% id in 358 aa, and to Rhizobium loti ABC transporter binding protein mlr7288 SWALL:Q986M5 (EMBL:AP003011) (340 aa) fasta scores: E(): 1.4e-24, 31.88% id in 345 aa; hypothetical protein complement(1589605..1590681) Pectobacterium atrosepticum SCRI1043 2884856 YP_049512.1 CDS fdnI NC_004547.2 1591099 1591734 R nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N subunit gamma complement(1591099..1591734) Pectobacterium atrosepticum SCRI1043 2883034 YP_049513.1 CDS fdnH NC_004547.2 1591727 1592635 R Similar to Escherichia coli, and Shigella flexneri formate dehydrogenase, nitrate-inducible, iron-sulfur subunit FdnH or b1475 or sf1750 SWALL:FDNH_ECOLI (SWALL:P24184) (294 aa) fasta scores: E(): 1.1e-98, 81.63% id in 294 aa; formate dehydrogenase, nitrate-inducible, iron-sulfur subunit complement(1591727..1592635) Pectobacterium atrosepticum SCRI1043 2883033 YP_049514.1 CDS fdnG NC_004547.2 1592648 1595695 R Similar to Escherichia coli formate dehydrogenase, nitrate-inducible, major subunit FdnG or b1474 SWALL:FDNG_ECOLI (SWALL:P24183) (1015 aa) fasta scores: E(): 0, 69.75% id in 1015 aa; formate dehydrogenase, nitrate-inducible, major subunit complement(1592648..1595695) Pectobacterium atrosepticum SCRI1043 2883038 YP_049515.1 CDS metG NC_004547.2 1595975 1598005 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1595975..1598005) Pectobacterium atrosepticum SCRI1043 2883949 YP_049516.1 CDS ECA1410 NC_004547.2 1598229 1599338 D Similar to Escherichia coli, and Escherichia coli O6 Mrp protein Mrp or b2113 or c2641 SWALL:MRP_ECOLI (SWALL:P21590) (369 aa) fasta scores: E(): 1.6e-109, 78.86% id in 369 aa, and to Shigella flexneri ATPase Mrp or sf2178 SWALL:AAN43707 (EMBL:AE015233) (379 aa) fasta scores: E(): 3.1e-109, 78.59% id in 369 aa; ATPase 1598229..1599338 Pectobacterium atrosepticum SCRI1043 2884606 YP_049517.1 CDS udk NC_004547.2 1599518 1600159 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1599518..1600159 Pectobacterium atrosepticum SCRI1043 2884212 YP_049518.1 CDS dcd NC_004547.2 1600255 1600836 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1600255..1600836 Pectobacterium atrosepticum SCRI1043 2884899 YP_049519.1 CDS asmA NC_004547.2 1600900 1602735 D YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; assembly protein 1600900..1602735 Pectobacterium atrosepticum SCRI1043 2884109 YP_049520.1 CDS dcuC NC_004547.2 1603000 1604352 D responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC 1603000..1604352 Pectobacterium atrosepticum SCRI1043 2884844 YP_049521.1 CDS ECA1415 NC_004547.2 1604432 1606018 R Similar to Yersinia pestis membrane protein ypo1527 SWALL:Q8ZFZ6 (EMBL:AJ414148) (528 aa) fasta scores: E(): 2.8e-151, 74.05% id in 528 aa, and to Escherichia coli hypothetical protein yegh or b2063 SWALL:YEGH_ECOLI (SWALL:P76389) (527 aa) fasta scores: E(): 1e-139, 69.18% id in 529 aa; hypothetical protein complement(1604432..1606018) Pectobacterium atrosepticum SCRI1043 2884607 YP_049522.1 CDS ECA1416 NC_004547.2 1606718 1607845 D Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase WecA or Rfe or b3784 or c4704 or sf3858 SWALL:WECA_ECOLI (SWALL:P24235) (367 aa) fasta scores: E(): 3e-70, 52.18% id in 343 aa; undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase 1606718..1607845 Pectobacterium atrosepticum SCRI1043 2884608 YP_049523.1 CDS wza NC_004547.2 1607969 1609105 D Similar to Escherichia coli, and Escherichia coli O157:H7 polysaccharide export protein Wza precursor Wza or b2062 or z3227 or ecs2867 SWALL:WZA_ECOLI (SWALL:P76388) (379 aa) fasta scores: E(): 3.3e-105, 68.86% id in 379 aa; polysaccharide export protein 1607969..1609105 Pectobacterium atrosepticum SCRI1043 2882658 YP_049524.1 CDS wzb NC_004547.2 1609114 1609548 D Similar to Salmonella typhimurium low molecular weight protein-tyrosine-phosphatase Wzb or stm2117 SWALL:WZB_SALTY (SWALL:Q9F7B2) (149 aa) fasta scores: E(): 1.5e-34, 65.73% id in 143 aa, and to Erwinia amylovora probable low molecular weight protein-tyrosine-phosphatase AmsI SWALL:AMSI_ERWAM (SWALL:Q46630) (144 aa) fasta scores: E(): 5.8e-37, 69.44% id in 144 aa; protein-tyrosine-phosphatase 1609114..1609548 Pectobacterium atrosepticum SCRI1043 2882653 YP_049525.1 CDS wzc NC_004547.2 1609565 1611733 D Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase 1609565..1611733 Pectobacterium atrosepticum SCRI1043 2882654 YP_049526.1 CDS rfbP NC_004547.2 1611941 1613374 D Similar to Salmonella typhimurium undecaprenyl-phosphate galactosephosphotransferase RfbP or stm2082 SWALL:RFBP_SALTY (SWALL:P26406) (476 aa) fasta scores: E(): 3e-129, 64.65% id in 464 aa, and to Erwinia amylovora UDP-galactose-lipid carrier transferase amsG SWALL:AMSG_ERWAM (SWALL:Q46628) (477 aa) fasta scores: E(): 2.8e-131, 66.3% id in 466 aa; undecaprenyl-phosphate galactosephosphotransferase 1611941..1613374 Pectobacterium atrosepticum SCRI1043 2885193 YP_049527.1 CDS rfbI NC_004547.2 1613498 1614457 D catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 1613498..1614457 Pectobacterium atrosepticum SCRI1043 2885158 YP_049528.1 CDS rfbF NC_004547.2 1614552 1615325 D Similar to Yersinia pestis, and Yersinia pseudotuberculosis glucose-1-phosphate cytidylyltransferase DdhA or ypo3115 or y1068 SWALL:AAN23053 (EMBL:AJ414155) (261 aa) fasta scores: E(): 1.9e-88, 80.54% id in 257 aa, and to Salmonella typhimurium glucose-1-phosphate cytidylyltransferase RfbF or stm2092 SWALL:RFBF_SALTY (SWALL:P26396) (257 aa) fasta scores: E(): 4.3e-86, 78.2% id in 257 aa; glucose-1-phosphate cytidylyltransferase 1614552..1615325 Pectobacterium atrosepticum SCRI1043 2885123 YP_049529.1 CDS rfbG NC_004547.2 1615316 1616422 D Similar to Salmonella typhimurium CDP-glucose 4,6-dehydratase RfbG or stm2091 SWALL:RFBG_SALTY (SWALL:P26397) (359 aa) fasta scores: E(): 5e-105, 68.92% id in 354 aa, and to Yersinia pseudotuberculosis cdp-glucose-4,6-dehydratase DdhB SWALL:Q8GJ99 (EMBL:AF461768) (391 aa) fasta scores: E(): 2.4e-111, 71.19% id in 361 aa; CDP-glucose 4,6-dehydratase 1615316..1616422 Pectobacterium atrosepticum SCRI1043 2885124 YP_049530.1 CDS rfbH NC_004547.2 1616422 1617735 D Similar to Salmonella typhimurium lipopolysaccharide biosynthesis protein RfbH or stm2090 SWALL:RFBH_SALTY (SWALL:P26398) (437 aa) fasta scores: E(): 3.5e-143, 78.94% id in 437 aa, and to Yersinia pestis CDP-4-keto-6-deoxy-D-glucose-3-dehydratase DdhC or ypo3113 SWALL:Q9RCD0 (EMBL:AJ251713) (437 aa) fasta scores: E(): 2.7e-142, 78.26% id in 437 aa; CDP-4-keto-6-deoxy-D-glucose-3-dehydratase 1616422..1617735 Pectobacterium atrosepticum SCRI1043 2885125 YP_049531.1 CDS hpcH NC_004547.2 1617930 1618712 D Similar to Escherichia coli 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: E(): 4.9e-22, 32.4% id in 250 aa; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1617930..1618712 Pectobacterium atrosepticum SCRI1043 2885419 YP_049532.1 CDS ECA1426 NC_004547.2 1618722 1620518 D Similar to Bacillus subtilis acetolactate synthase large subunit IlvB SWALL:ILVB_BACSU (SWALL:P37251) (573 aa) fasta scores: E(): 5.9e-45, 32.32% id in 563 aa; thiamine pyrophosphate enzyme 1618722..1620518 Pectobacterium atrosepticum SCRI1043 2884569 YP_049533.1 CDS ECA1427 NC_004547.2 1620524 1621459 D Similar to Leptospira interrogans dTDP-glucose 4,6-dehydratase RfbB1 or la0235 SWALL:AAN47434 (EMBL:AE011212) (321 aa) fasta scores: E(): 0.0023, 23.05% id in 321 aa, and to Pyrococcus horikoshii 306aa long hypothetical UDP-glucose 4-epimerase ph1742 SWALL:O59375 (EMBL:AP000007) (306 aa) fasta scores: E(): 0.011, 28.63% id in 213 aa; dTDP-glucose 4,6-dehydratase 1620524..1621459 Pectobacterium atrosepticum SCRI1043 2884570 YP_049534.1 CDS nahO NC_004547.2 1621487 1622377 D catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 1621487..1622377 Pectobacterium atrosepticum SCRI1043 2884611 YP_049535.1 CDS nahM NC_004547.2 1622382 1623413 D catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 1622382..1623413 Pectobacterium atrosepticum SCRI1043 2884610 YP_049536.1 CDS ECA1430 NC_004547.2 1623416 1624471 D Similar to Cicer arietinum dTDP-glucose 4-6-dehydratase SWALL:Q9SMJ5 (EMBL:AJ275318) (346 aa) fasta scores: E(): 1.7e-10, 28.52% id in 284 aa, and to Leptospira interrogans dTDP-glucose 4,6-dehydratase RfbB4 or la1661 SWALL:AAN48860 (EMBL:AE011344) (369 aa) fasta scores: E(): 1.2e-09, 28.67% id in 279 aa; dTDP-glucose 4-6-dehydratase 1623416..1624471 Pectobacterium atrosepticum SCRI1043 2884571 YP_049537.1 CDS rfbX NC_004547.2 1624709 1626028 D Similar to Salmonella typhi O-antigen transporter RfbX or sty2297 SWALL:RFBX_SALTI (SWALL:Q99191) (432 aa) fasta scores: E(): 2.3e-41, 33.25% id in 418 aa, and to Yersinia pseudotuberculosis O-antigen export protein RfbX SWALL:RFBX_YERPS (SWALL:Q05347) (437 aa) fasta scores: E(): 3.6e-33, 35.66% id in 429 aa; O-antigen transporter 1624709..1626028 Pectobacterium atrosepticum SCRI1043 2885069 YP_049538.1 CDS ECA1432 NC_004547.2 1625991 1626770 D Similar to Streptococcus agalactiae CpsI cpsI SWALL:Q9RPC3 (EMBL:AF163833) (322 aa) fasta scores: E(): 2.4e-08, 26.76% id in 213 aa, and to Chlorobium tepidum glycosyl transferase ct0919 SWALL:Q8KDX5 (EMBL:AE012857) (288 aa) fasta scores: E(): 7.9e-13, 29.48% id in 251 aa; glycosyl transferase family protein 1625991..1626770 Pectobacterium atrosepticum SCRI1043 2884582 YP_049539.1 CDS ECA1433 NC_004547.2 1626767 1627393 D Similar to Ralstonia solanacearum acyl transferase protein rsp1012 or rs02346 SWALL:Q8XR49 (EMBL:AL646082) (170 aa) fasta scores: E(): 4.2e-11, 36.7% id in 188 aa, and to Methanococcus jannaschii hypothetical protein Mj1064 SWALL:YA64_METJA (SWALL:Q58464) (214 aa) fasta scores: E(): 5.1e-10, 31.75% id in 211 aa; acyl transferase 1626767..1627393 Pectobacterium atrosepticum SCRI1043 2884583 YP_049540.1 CDS ECA1434 NC_004547.2 1627409 1628554 D Similar to Vibrio cholerae WblE protein SWALL:O87161 (EMBL:AB012957) (359 aa) fasta scores: E(): 2.9e-09, 26.18% id in 317 aa, and to Streptococcus thermophilus EpsG SWALL:Q56044 (EMBL:U40830) (372 aa) fasta scores: E(): 1.1e-08, 26.85% id in 324 aa; glycosyl transferase family protein 1627409..1628554 Pectobacterium atrosepticum SCRI1043 2884584 YP_049541.1 CDS rfc NC_004547.2 1628551 1629753 D Similar to Salmonella typhimurium, and Salmonella typhi O-antigen polymerase Rfc or stm1332 or sty1779 SWALL:RFC_SALTY (SWALL:P26479) (407 aa) fasta scores: E(): 1.4e-54, 39.58% id in 389 aa; O-antigen polymerase 1628551..1629753 Pectobacterium atrosepticum SCRI1043 2885070 YP_049542.1 CDS rfbU NC_004547.2 1629786 1630895 D Similar to Salmonella typhimurium RfbU protein RfbU or stm2086 SWALL:RFBU_SALTY (SWALL:P26402) (353 aa) fasta scores: E(): 2.8e-40, 45.65% id in 357 aa, and to Salmonella typhi glycosyltransferase RfbU or sty2295 SWALL:Q8Z5I8 (EMBL:AL627273) (353 aa) fasta scores: E(): 2.8e-40, 45.93% id in 357 aa; glycosyl transferase family protein 1629786..1630895 Pectobacterium atrosepticum SCRI1043 2885194 YP_049543.1 CDS rfbN NC_004547.2 1631014 1631931 D Similar to Salmonella typhimurium o antigen biosynthesis rhamnosyltransferase RfbN or stm2085 SWALL:RFBN_SALTY (SWALL:P26403) (314 aa) fasta scores: E(): 2.1e-53, 45.24% id in 305 aa, and to Actinobacillus pleuropneumoniae rhamnosyl transferase SWALL:Q9EYG7 (EMBL:AF329452) (303 aa) fasta scores: E(): 2.9e-54, 47.52% id in 303 aa; O antigen biosynthesis rhamnosyltransferase rfbn 1631014..1631931 Pectobacterium atrosepticum SCRI1043 2885192 YP_049544.1 CDS rfbM NC_004547.2 1631952 1633361 D Similar to Escherichia coli mannose-1-phosphate guanylyltransferase ManC or CpsB or RfbM or b2049 SWALL:MANC_ECOLI (SWALL:P24174) (478 aa) fasta scores: E(): 2.1e-114, 60.88% id in 473 aa, and to Shigella flexneri mannose-1-phosphate guanyltransferase CpsB_1 or sf2112 SWALL:AAN43651 (EMBL:AE015227) (478 aa) fasta scores: E(): 5.5e-115, 61.31% id in 473 aa; mannose-1-phosphate guanylyltransferase 1631952..1633361 Pectobacterium atrosepticum SCRI1043 2885160 YP_049545.1 CDS rfbK NC_004547.2 1633374 1634744 D Similar to Escherichia coli phosphomannomutase ManB or RfbK or RfbK2 SWALL:RFK9_ECOLI (SWALL:P37755) (456 aa) fasta scores: E(): 8.5e-137, 74.34% id in 456 aa; phosphomannomutase 1633374..1634744 Pectobacterium atrosepticum SCRI1043 2885159 YP_049546.1 CDS rfbD NC_004547.2 1634820 1635671 R Similar to Escherichia coli dTDP-4-dehydrorhamnose reductase RfbD or RmlD or b2040 SWALL:RBD1_ECOLI (SWALL:P37760) (299 aa) fasta scores: E(): 8.3e-36, 41.72% id in 290 aa, and to Actinobacillus actinomycetemcomitans dTDP-4-keto-L-rhamnose reductase RmlD SWALL:Q9XDQ6 (EMBL:AB030032) (292 aa) fasta scores: E(): 4.3e-53, 51.56% id in 287 aa; dTDP-4-dehydrorhamnose reductase complement(1634820..1635671) Pectobacterium atrosepticum SCRI1043 2885287 YP_049547.1 CDS rfbC NC_004547.2 1635668 1636204 R Similar to Escherichia coli dTDP-6-deoxy-D-glucose-3,5 epimerase RmlC SWALL:AAN60457 (EMBL:AF529080) (180 aa) fasta scores: E(): 5.4e-40, 59.06% id in 171 aa, and to Salmonella typhimurium dTDP-4-dehydrorhamnose 3,5-epimerase RfbC or RmlC or stm2094 SWALL:RFBC_SALTY (SWALL:P26394) (183 aa) fasta scores: E(): 9.9e-41, 58.28% id in 175 aa; dTDP-6-deoxy-D-glucose-3,5 epimerase complement(1635668..1636204) Pectobacterium atrosepticum SCRI1043 2885286 YP_049548.1 CDS rfbA NC_004547.2 1636206 1637078 R Similar to Escherichia coli, and Shigella flexneri glucose-1-phosphate thymidylyltransferase RffH or b3789 or sf3863 SWALL:RFFH_ECOLI (SWALL:P27831) (293 aa) fasta scores: E(): 7.2e-85, 76.22% id in 286 aa, and to Salmonella typhimurium glucose-1-phosphate thymidylyltransferase RfbA or stm2095 SWALL:RFBA_SALTY (SWALL:P26393) (292 aa) fasta scores: E(): 3.2e-76, 67.36% id in 285 aa; glucose-1-phosphate thymidylyltransferase complement(1636206..1637078) Pectobacterium atrosepticum SCRI1043 2885285 YP_049549.1 CDS galF NC_004547.2 1637322 1638218 D Similar to Escherichia coli, and Escherichia coli O157:H7 UTP--glucose-1-phosphate uridylyltransferase GalF or WcaN or b2042 or z3205 or ecs2846 SWALL:GALF_ECOLI (SWALL:P78083) (297 aa) fasta scores: E(): 7.1e-74, 65.43% id in 298 aa, and to Salmonella typhimurium, and Salmonella typhi UTP--glucose-1-phosphate uridylyltransferase GalF or stm2098 or sty2308 SWALL:GALF_SALTY (SWALL:P26390) (297 aa) fasta scores: E(): 7.1e-74, 64.43% id in 298 aa; UTP-glucose-1-phosphate uridylyltransferase 1637322..1638218 Pectobacterium atrosepticum SCRI1043 2883165 YP_049550.1 CDS gnd NC_004547.2 1638449 1639855 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1638449..1639855 Pectobacterium atrosepticum SCRI1043 2881583 YP_049551.1 CDS ECA1445 NC_004547.2 1640325 1640573 D Similar to Vibrio parahaemolyticus hypothetical protein vp0218 SWALL:BAC58481 (EMBL:AP005073) (72 aa) fasta scores: E(): 0.015, 48.71% id in 78 aa, and to Vibrio vulnificus hypothetical protein vv10787 SWALL:Q8DE18 (EMBL:AE016799) (86 aa) fasta scores: E(): 0.58, 48.91% id in 92 aa; hypothetical protein 1640325..1640573 Pectobacterium atrosepticum SCRI1043 2884802 YP_049552.1 CDS ECA1446 NC_004547.2 1640649 1641326 D Similar to Vibrio cholerae DNA for otn region genes OtnE SWALL:Q56656 (EMBL:X90547) (229 aa) fasta scores: E(): 1.1e-22, 33.64% id in 211 aa, and to Shigella flexneri orf, conserved hypothetical protein yjbf or sf4178 SWALL:AAN45599 (EMBL:AE015426) (222 aa) fasta scores: E(): 4.3e-20, 34.52% id in 223 aa; lipoprotein 1640649..1641326 Pectobacterium atrosepticum SCRI1043 2884803 YP_049553.1 CDS ECA1447 NC_004547.2 1641336 1642118 D Similar to Escherichia coli hypothetical protein ymcb precursor ymcb or b0985 SWALL:YMCB_ECOLI (SWALL:P75883) (248 aa) fasta scores: E(): 3.6e-08, 31% id in 258 aa, and to Shigella flexneri orf, conserved hypothetical protein ymcb or sf0987 SWALL:AAN42615 (EMBL:AE015127) (248 aa) fasta scores: E(): 3.6e-08, 32.04% id in 259 aa; hypothetical protein 1641336..1642118 Pectobacterium atrosepticum SCRI1043 2884804 YP_049554.1 CDS ECA1448 NC_004547.2 1642115 1644247 D Similar to Shigella flexneri orf, conserved hypothetical protein yjbh or sf4176 SWALL:AAN45597 (EMBL:AE015426) (698 aa) fasta scores: E(): 1e-142, 52.89% id in 673 aa, and to Escherichia coli hypothetical lipoprotein yjbh precursor yjbh or b4029 SWALL:YJBH_ECOLI (SWALL:P32689) (698 aa) fasta scores: E(): 5.8e-142, 53.04% id in 673 aa; hypothetical protein 1642115..1644247 Pectobacterium atrosepticum SCRI1043 2884685 YP_049555.1 CDS ECA1449 NC_004547.2 1644638 1645195 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1644638..1645195 Pectobacterium atrosepticum SCRI1043 2884686 YP_049556.1 CDS ECA1450 NC_004547.2 1645215 1646834 D Similar to Bacillus subtilis kumamolysin kumA SWALL:Q8RR56 (EMBL:AB070740) (572 aa) fasta scores: E(): 6.7e-73, 42.67% id in 539 aa, and to Alicyclobacillus sendaienensis collagenolytic serine-carboxyl proteinase precursor AscP SWALL:BAC41257 (EMBL:AB085855) (553 aa) fasta scores: E(): 3.3e-72, 43.59% id in 539 aa; protease 1645215..1646834 Pectobacterium atrosepticum SCRI1043 2884687 YP_049557.1 CDS ECA1451 NC_004547.2 1647128 1648552 D Similar to Escherichia coli 6-phospho-beta-glucosidase BglA or b2901 SWALL:BGLA_ECOLI (SWALL:Q46829) (479 aa) fasta scores: E(): 2.3e-55, 42.14% id in 484 aa, and to Streptomyces sp beta-glucosidase bgl3 SWALL:Q59976 (EMBL:Z29625) (479 aa) fasta scores: E(): 8.1e-57, 38.13% id in 472 aa; glycosyl hydrolase 1647128..1648552 Pectobacterium atrosepticum SCRI1043 2884688 YP_049558.1 CDS ECA1452 NC_004547.2 1648648 1649484 D Similar to Erwinia chrysanthemi beta-glucoside operon antiterminator ArbG SWALL:ARBG_ERWCH (SWALL:P26211) (283 aa) fasta scores: E(): 3e-42, 42.23% id in 277 aa, and to Escherichia coli cryptic beta-glucoside bgl operon antiterminator BglG or BglC or b3723 SWALL:BGLG_ECOLI (SWALL:P11989) (278 aa) fasta scores: E(): 8.6e-39, 37.95% id in 274 aa. Also similar to ECA1869, ArbG, (45.600% id. in 250 aa overlap), and to ECA4389 (37.956% id. in 274 aa overlap), and to ECA0858 (37.500% id. in 272 aa overlap); beta-glucoside operon antiterminator 1648648..1649484 Pectobacterium atrosepticum SCRI1043 2884642 YP_049559.1 CDS adrA NC_004547.2 1649698 1650771 D Similar to Salmonella typhimurium AdrA protein AdrA or YaiC or stm0385 SWALL:Q9L401 (EMBL:AJ271071) (370 aa) fasta scores: E(): 1.7e-63, 46.49% id in 342 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein YaiC or b0385 or c0492 SWALL:YAIC_ECOLI (SWALL:P21830) (371 aa) fasta scores: E(): 2.9e-66, 47.98% id in 348 aa; signaling membrane protein 1649698..1650771 Pectobacterium atrosepticum SCRI1043 2883813 YP_049560.1 CDS ECA1454 NC_004547.2 1650843 1651130 R Similar to Yersinia pestis hypothetical protein ypo2589 ypo2589 or y1159 SWALL:AAM84736 (EMBL:AJ414152) (95 aa) fasta scores: E(): 3.5e-24, 66.31% id in 95 aa, and to Clostridium acetobutylicum uncharacterized conserved protein, ygin family cac3394 SWALL:Q97DS8 (EMBL:AE007837) (96 aa) fasta scores: E(): 2.4e-09, 40.69% id in 86 aa; hypothetical protein complement(1650843..1651130) Pectobacterium atrosepticum SCRI1043 2884643 YP_049561.1 CDS ECA1455 NC_004547.2 1651178 1652035 R Similar to Salmonella typhimurium transcriptional regulator stm4417 SWALL:Q8ZK65 (EMBL:AE008907) (277 aa) fasta scores: E(): 1.2e-62, 65.29% id in 268 aa, and to Yersinia pestis hypothetical protein ypo2576 or y1145 SWALL:Q8ZDJ0 (EMBL:AJ414152) (284 aa) fasta scores: E(): 4.3e-82, 79.93% id in 284 aa; transcriptional regulator complement(1651178..1652035) Pectobacterium atrosepticum SCRI1043 2884644 YP_049562.1 CDS ECA1456 NC_004547.2 1652381 1653892 D Similar to Pseudomonas aeruginosa methylmalonate-semialdehyde dehydrogenase [acylating] MmsA or pa3570 SWALL:MMSA_PSEAE (SWALL:P28810) (496 aa) fasta scores: E(): 2.6e-87, 49.68% id in 483 aa, and to Yersinia pestis aldehyde dehydrogenase ypo2577 or y1146 SWALL:Q8ZDI9 (EMBL:AJ414152) (508 aa) fasta scores: E(): 1.9e-151, 78.62% id in 510 aa; aldehyde dehydrogenase 1652381..1653892 Pectobacterium atrosepticum SCRI1043 2884706 YP_049563.1 CDS ECA1457 NC_004547.2 1654089 1656020 D Similar to Yersinia pestis thiamine pyrophosphate-dependent protein ypo2578 SWALL:Q8ZDI8 (EMBL:AJ414152) (648 aa) fasta scores: E(): 1.8e-193, 74.33% id in 643 aa, and to Clostridium perfringens myo-inositol catabolism protein iold or cpe0089 SWALL:Q8XP76 (EMBL:AP003185) (639 aa) fasta scores: E(): 3.3e-142, 57.12% id in 639 aa; thiamine pyrophosphate-dependent protein 1654089..1656020 Pectobacterium atrosepticum SCRI1043 2884707 YP_049564.1 CDS idhA NC_004547.2 1656775 1657761 D Similar to Rhizobium meliloti myo-inositol 2-dehydrogenase IdhA or rb1194 or smb20899 SWALL:MI2D_RHIME (SWALL:O68965) (330 aa) fasta scores: E(): 4.2e-59, 49.84% id in 323 aa, and to Brucella melitensis myo-inositol 2-dehydrogenase bmeii0574 SWALL:Q8YCF6 (EMBL:AE009694) (334 aa) fasta scores: E(): 1.7e-60, 51.07% id in 325 aa; myo-inositol 2-dehydrogenase 1656775..1657761 Pectobacterium atrosepticum SCRI1043 2882765 YP_049565.1 CDS ECA1459 NC_004547.2 1657836 1658774 D Similar to Salmonella typhimurium, and Salmonella typhi D-ribose-binding periplasmic protein precursor RbsP or stm3884 or sty3894 SWALL:RBSB_SALTY (SWALL:P02926) (296 aa) fasta scores: E(): 6.8e-24, 35.95% id in 267 aa, and to Yersinia pestis sugar-binding periplasmic protein ypo2581 SWALL:Q8ZDI7 (EMBL:AJ414152) (309 aa) fasta scores: E(): 6.5e-87, 80.76% id in 312 aa; sugar ABC transporter periplasmic protein 1657836..1658774 Pectobacterium atrosepticum SCRI1043 2884708 YP_049566.1 CDS ECA1460 NC_004547.2 1658980 1660527 D Similar to Yersinia pestis ATP-binding component of D-ribose high-affinity transport system RbsA or y1150 SWALL:AAM84727 (EMBL:AE013719) (515 aa) fasta scores: E(): 1.9e-156, 80.19% id in 515 aa, and to Caulobacter crescentus sugar ABC transporter, ATP-binding protein cc0860 SWALL:Q9A9V1 (EMBL:AE005763) (515 aa) fasta scores: E(): 5.3e-94, 53.72% id in 510 aa; sugar ABC transporter ATP-binding protein 1658980..1660527 Pectobacterium atrosepticum SCRI1043 2884036 YP_049567.1 CDS ECA1461 NC_004547.2 1660540 1661571 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 8.2e-43, 43.93% id in 330 aa, and to Yersinia pestis sugar transport system permease protein ypo2583 or rbsc or y1151 SWALL:Q8ZDI5 (EMBL:AJ414152) (342 aa) fasta scores: E(): 8.4e-110, 87.64% id in 340 aa; sugar ABC transporter permease 1660540..1661571 Pectobacterium atrosepticum SCRI1043 2884037 YP_049568.1 CDS ECA1462 NC_004547.2 1661611 1662744 D Similar to Yersinia pestis hypothetical protein Ypo2584 SWALL:Q8ZDI4 (EMBL:AJ414152) (377 aa) fasta scores: E(): 1.1e-117, 76.59% id in 376 aa, and to Rhizobium meliloti oxidoreductase protein r00356 or smc01163 SWALL:Q92SL5 (EMBL:AL591783) (376 aa) fasta scores: E(): 6.5e-61, 45.92% id in 368 aa; oxidoreductase 1661611..1662744 Pectobacterium atrosepticum SCRI1043 2884038 YP_049569.1 CDS ECA1463 NC_004547.2 1662791 1664695 D Similar to Bacillus subtilis protein IolC or e83C SWALL:IOLC_BACSU (SWALL:P42414) (325 aa) fasta scores: E(): 1e-21, 31.64% id in 335 aa, and to Yersinia pestis carbohydrate kinase ypo2585 or y1153 SWALL:Q8ZDI3 (EMBL:AJ414152) (656 aa) fasta scores: E(): 3.8e-208, 78.44% id in 631 aa; carbohydrate kinase 1662791..1664695 Pectobacterium atrosepticum SCRI1043 2883978 YP_049570.1 CDS mocC NC_004547.2 1664731 1665621 D Similar to Rhizobium meliloti rhizopine catabolism protein MocC mocC SWALL:MOCC_RHIME (SWALL:P49304) (325 aa) fasta scores: E(): 1.3e-63, 53.58% id in 293 aa, and to Bacillus subtilis IolE protein IolE e83E SWALL:IOLE_BACSU (SWALL:P42416) (297 aa) fasta scores: E(): 5.1e-37, 37.67% id in 284 aa; myo-inositol catabolism protein 1664731..1665621 Pectobacterium atrosepticum SCRI1043 2885450 YP_049571.1 CDS ECA1465 NC_004547.2 1665648 1666472 D Similar to Yersinia pestis hypothetical protein ypo2587 or y1155 SWALL:Q8ZDI1 (EMBL:AJ414152) (271 aa) fasta scores: E(): 5.7e-84, 75.09% id in 265 aa, and to Salmonella typhimurium inner membrane protein stm4420 SWALL:Q8ZK62 (EMBL:AE008907) (269 aa) fasta scores: E(): 5e-73, 66.54% id in 269 aa; hypothetical protein 1665648..1666472 Pectobacterium atrosepticum SCRI1043 2883979 YP_049572.1 CDS ECA1466 NC_004547.2 1666599 1666913 R Similar to Enterobacter aerogenes KluB SWALL:Q93KC5 (EMBL:U67194) (104 aa) fasta scores: E(): 1.4e-21, 58.41% id in 101 aa, and to Pseudomonas sp. hypothetical 11.6 kDa protein orf1 SWALL:Q937D2 (EMBL:U66917) (104 aa) fasta scores: E(): 8.5e-22, 59.4% id in 101 aa; hypothetical protein complement(1666599..1666913) Pectobacterium atrosepticum SCRI1043 2883980 YP_049573.1 CDS ECA1467 NC_004547.2 1666913 1667191 R Similar to Enterobacter aerogenes KluA kluA SWALL:Q93KC6 (EMBL:U67194) (89 aa) fasta scores: E(): 6e-17, 60.92% id in 87 aa, and to Pseudomonas sp. hypothetical 10.2 kDa protein orf2 SWALL:Q937D1 (EMBL:U66917) (93 aa) fasta scores: E(): 6.3e-17, 60.92% id in 87 aa; hypothetical protein complement(1666913..1667191) Pectobacterium atrosepticum SCRI1043 2883484 YP_049574.1 CDS ECA1468 NC_004547.2 1667267 1667956 R Similar to Pseudomonas putida ABC transporter, ATP-binding protein, pp1078 SWALL:AAN66703 (EMBL:AE016778) (369 aa) fasta scores: E(): 1.5e-40, 54.5% id in 222 aa, and to Synechococcus elongatus ABC transporter ATP-binding protein tll1492 SWALL:BAC09044 (EMBL:AP005374) (373 aa) fasta scores: E(): 1.5e-37, 54.83% id in 217 aa; ABC transporter ATP-binding protein complement(1667267..1667956) Pectobacterium atrosepticum SCRI1043 2883485 YP_049575.1 CDS ECA1469 NC_004547.2 1667978 1669675 R Similar to Brucella suis iron compound ABC transporter, permease protein, bra0699 SWALL:AAN33884 (EMBL:AE014565) (589 aa) fasta scores: E(): 1.3e-97, 51.53% id in 553 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein fbpa3 or atu0408 or agr_c_717 SWALL:Q8UI90 (EMBL:AE009011) (558 aa) fasta scores: E(): 1.3e-95, 52.94% id in 527 aa; ABC transporter permease complement(1667978..1669675) Pectobacterium atrosepticum SCRI1043 2883486 YP_049576.1 CDS ECA1470 NC_004547.2 1669659 1670708 R Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein fbpa or atu0407 or agr_c_715 SWALL:Q8UI91 (EMBL:AE009011) (351 aa) fasta scores: E(): 5.4e-84, 64.18% id in 349 aa, and to Brucella melitensis iron bmeii0584 SWALL:Q8YCE7 (EMBL:AE009695) (338 aa) fasta scores: E(): 1.2e-83, 64.93% id in 328 aa; ABC transporter substrate binding protein complement(1669659..1670708) Pectobacterium atrosepticum SCRI1043 2883487 YP_049577.1 CDS ECA1471 NC_004547.2 1671080 1671343 D Similar to the C-terminal regions of Escherichia coli hypothetical protein YeaP or b1794 SWALL:YEAP_ECOLI (SWALL:P76245) (341 aa) fasta scores: E(): 0.00026, 41.79% id in 67 aa, and to Shigella flexneri orf, conserved hypothetical protein yeap or sf1430 SWALL:AAN43030 (EMBL:AE015167) (384 aa) fasta scores: E(): 0.00029, 41.79% id in 67 aa; hypothetical protein 1671080..1671343 Pectobacterium atrosepticum SCRI1043 2883340 YP_049578.1 CDS ECA1472 NC_004547.2 1671324 1671578 R Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein T1150 t1150 SWALL:AAO68810 (EMBL:AE016838) (60 aa) fasta scores: E(): 2.6e-06, 52.72% id in 55 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yoag or b1796 or c2202 or z2838 or ecs2505 SWALL:YOAG_ECOLI (SWALL:P76247) (60 aa) fasta scores: E(): 7.9e-06, 49.09% id in 55 aa; hypothetical protein complement(1671324..1671578) Pectobacterium atrosepticum SCRI1043 2883341 YP_049579.1 CDS ECA1474 NC_004547.2 1671671 1672003 R Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein year or b1797 or z2839 or ecs2506 SWALL:YEAR_ECOLI (SWALL:P76248) (119 aa) fasta scores: E(): 3.1e-30, 66.66% id in 105 aa, and to Salmonella typhi hypothetical protein Sty1850 SWALL:Q8Z6D6 (EMBL:AL627271) (120 aa) fasta scores: E(): 5.8e-30, 65.71% id in 105 aa; hypothetical protein complement(1671671..1672003) Pectobacterium atrosepticum SCRI1043 2883342 YP_049580.1 CDS ECA1475 NC_004547.2 1672245 1672835 D Similar to Bacillus halodurans hypothetical protein Bh0392 SWALL:Q9KFT5 (EMBL:AP001508) (202 aa) fasta scores: E(): 6.2e-23, 38.54% id in 192 aa, and to Thermoplasma acidophilum hypothetical protein Ta1444 SWALL:Q9HI97 (EMBL:AL445067) (214 aa) fasta scores: E(): 1.2e-18, 37.11% id in 194 aa; hypothetical protein 1672245..1672835 Pectobacterium atrosepticum SCRI1043 2883296 YP_049581.1 CDS ECA1476 NC_004547.2 1672922 1673326 R Similar to Ralstonia solanacearum hypothetical protein rsc3100 or rs00553 SWALL:Q8XUT5 (EMBL:AL646073) (131 aa) fasta scores: E(): 0.0028, 31.3% id in 115 aa, and to Halobacterium sp. Vng0367H SWALL:Q9HS78 (EMBL:AE004995) (114 aa) fasta scores: E(): 0.049, 28.71% id in 101 aa; hypothetical protein complement(1672922..1673326) Pectobacterium atrosepticum SCRI1043 2883297 YP_049582.1 CDS ECA1477 NC_004547.2 1673638 1673904 R Similar to Ralstonia solanacearum hypothetical protein rsc2590 or rs00838 SWALL:Q8XW85 (EMBL:AL646070) (128 aa) fasta scores: E(): 2.3e-14, 57.33% id in 75 aa, and to Mycobacterium tuberculosis hypothetical protein rv2740 or mtv002.05 SWALL:O33283 (EMBL:AL008967) (149 aa) fasta scores: E(): 0.3, 36.23% id in 69 aa; hypothetical protein complement(1673638..1673904) Pectobacterium atrosepticum SCRI1043 2883298 YP_049583.1 CDS ECA1478 NC_004547.2 1674049 1674948 D Similar to Ralstonia solanacearum probable transcription regulator protein rsc2598 or rs00846 SWALL:Q8XW77 (EMBL:AL646070) (299 aa) fasta scores: E(): 7.9e-85, 74.4% id in 293 aa, and to Rhizobium loti probable transcriptional regulator mlr2197 SWALL:Q98IX9 (EMBL:AP002999) (298 aa) fasta scores: E(): 3.3e-49, 48.92% id in 280 aa; AraC family transcriptional regulator 1674049..1674948 Pectobacterium atrosepticum SCRI1043 2883175 YP_049584.1 CDS ECA1479 NC_004547.2 1675101 1676003 R Similar to Agrobacterium tumefaciens transcriptional regulator, LysR family atu5325 or agr_pat_467 SWALL:Q8UJZ9 (EMBL:AE008954) (300 aa) fasta scores: E(): 6.9e-83, 71.33% id in 300 aa, and to Rhizobium loti transcriptional regulator mll2784 SWALL:Q98HN8 (EMBL:AP003000) (307 aa) fasta scores: E(): 1.2e-37, 39.11% id in 294 aa; LysR family transcriptional regulator complement(1675101..1676003) Pectobacterium atrosepticum SCRI1043 2883176 YP_049585.1 CDS ECA1480 NC_004547.2 1676095 1677111 D Similar to Streptomyces avermitilis zinc-binding oxidoreductase SWALL:BAC68386 (EMBL:AP005023) (331 aa) fasta scores: E(): 1e-66, 58.55% id in 333 aa, and to Agrobacterium tumefaciens zinc-binding oxidoreductase atu5324 or agr_pat_466 SWALL:Q8UK00 (EMBL:AE008954) (353 aa) fasta scores: E(): 4.3e-92, 73.73% id in 335 aa; zinc-binding oxidoreductase 1676095..1677111 Pectobacterium atrosepticum SCRI1043 2883177 YP_049586.1 CDS ECA1481 NC_004547.2 1677773 1678411 D Similar to Pseudomonas putida thymidylate kinase, pp3363 SWALL:AAN68967 (EMBL:AE016786) (205 aa) fasta scores: E(): 1.3e-57, 73.76% id in 202 aa; hypothetical protein 1677773..1678411 Pectobacterium atrosepticum SCRI1043 2882980 YP_049587.1 CDS ECA1482 NC_004547.2 1678659 1679588 R Similar to Rhizobium loti transcriptional regulator mlr0648 SWALL:Q98MB4 (EMBL:AP002995) (311 aa) fasta scores: E(): 4.8e-28, 31.95% id in 291 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa1328 SWALL:Q9I416 (EMBL:AE004562) (302 aa) fasta scores: E(): 3.5e-27, 34.72% id in 288 aa; LysR family transcriptional regulator complement(1678659..1679588) Pectobacterium atrosepticum SCRI1043 2882981 YP_049588.1 CDS ECA1483 NC_004547.2 1679728 1680303 D Similar to Klebsiella aerogenes KefC regulator YabF SWALL:Q9X755 (EMBL:AJ242913) (177 aa) fasta scores: E(): 4.1e-15, 36.36% id in 176 aa, and to Escherichia coli, and Escherichia coli O6 NAD(P)H oxidoreductase YabF or b0046 or c0056 SWALL:YABF_ECOLI (SWALL:P31577) (176 aa) fasta scores: E(): 1e-17, 46.47% id in 142 aa; NAD(P)H oxidoreductase 1679728..1680303 Pectobacterium atrosepticum SCRI1043 2882982 YP_049589.1 CDS ECA1484 NC_004547.2 1680319 1680597 D Similar to Yersinia pestis hypothetical protein Ypo1733 SWALL:Q8ZFH6 (EMBL:AJ414150) (94 aa) fasta scores: E(): 9.6e-06, 33.33% id in 87 aa, and to Rhizobium loti hypothetical protein Mlr3009 SWALL:Q98H68 (EMBL:AP003000) (101 aa) fasta scores: E(): 0.00016, 37.2% id in 86 aa; hypothetical protein 1680319..1680597 Pectobacterium atrosepticum SCRI1043 2885583 YP_049590.1 CDS ECA1485 NC_004547.2 1680733 1681461 D Similar to Fusobacterium nucleatum hypothetical cytosolic protein Fn1347 SWALL:Q8RDZ4 (EMBL:AE010639) (218 aa) fasta scores: E(): 2.7e-21, 31.77% id in 214 aa, and to Rhizobium meliloti hypothetical protein ra0291 or sma0558 SWALL:Q930A7 (EMBL:AE007221) (170 aa) fasta scores: E(): 6.4e-06, 34.94% id in 83 aa; lipoprotein 1680733..1681461 Pectobacterium atrosepticum SCRI1043 2885584 YP_049591.1 CDS ECA1486 NC_004547.2 1681842 1683506 R Similar to Pseudomonas syringae ATP-binding protein SyrD SWALL:SYRD_PSESY (SWALL:P33951) (566 aa) fasta scores: E(): 1.2e-54, 34.27% id in 566 aa, and to Synechococcus elongatus ABC transporter ATP-binding protein tlr1649 SWALL:BAC09201 (EMBL:AP005374) (542 aa) fasta scores: E(): 6e-69, 39.92% id in 541 aa; ABC transporter ATP-binding protein complement(1681842..1683506) Pectobacterium atrosepticum SCRI1043 2885585 YP_049592.1 CDS ECA1487 NC_004547.2 1683593 1704739 R Similar to Pseudomonas syringae syringomycin synthetase SyrE SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 43.13% id in 6600 aa, and to Anabaena sp. 90 peptide synthetase AdpB SWALL:Q9K5M1 (EMBL:AJ269505) (5060 aa) fasta scores: E(): 2.8e-208, 34.22% id in 4859 aa; non-ribosomal peptide synthetase complement(1683593..1704739) Pectobacterium atrosepticum SCRI1043 2885586 YP_049593.1 CDS ECA1488 NC_004547.2 1704732 1727303 R Similar to Pseudomonas syringae syringomycin synthetase SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 42.92% id in 7655 aa, and to Pseudomonas sp. MIS38 arthrofactin synthetase c arfC SWALL:BAC67536 (EMBL:AB107223) (5924 aa) fasta scores: E(): 0, 46.8% id in 5469 aa; non-ribosomal peptide synthetase complement(1704732..1727303) Pectobacterium atrosepticum SCRI1043 2885527 YP_049594.1 CDS lacY NC_004547.2 1728129 1729391 R lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments; galactoside permease complement(1728129..1729391) Pectobacterium atrosepticum SCRI1043 2883665 YP_049595.1 CDS lacZ NC_004547.2 1729534 1732656 R forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon; beta-D-galactosidase complement(1729534..1732656) Pectobacterium atrosepticum SCRI1043 2883666 YP_049596.1 CDS lacI NC_004547.2 1732952 1734028 R transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer; lac repressor complement(1732952..1734028) Pectobacterium atrosepticum SCRI1043 2883740 YP_049597.1 CDS fbpC NC_004547.2 1734179 1735237 R Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import; ferric transporter ATP-binding subunit complement(1734179..1735237) Pectobacterium atrosepticum SCRI1043 2883212 YP_049598.1 CDS afuB NC_004547.2 1735243 1737321 R Similar to Actinobacillus pleuropneumoniae ferric transport system permease protein AfuB SWALL:AFUB_ACTPL (SWALL:Q44123) (687 aa) fasta scores: E(): 8.6e-167, 64.73% id in 672 aa, and to Escherichia coli O157:H7 permease component of transport system for ferric iron AfuB or z0459 or ecs0414 SWALL:Q8X5J2 (EMBL:AE005215) (692 aa) fasta scores: E(): 2.1e-217, 81.21% id in 692 aa; ferric ABC transporter permease complement(1735243..1737321) Pectobacterium atrosepticum SCRI1043 2883248 YP_049599.1 CDS afuA NC_004547.2 1737522 1738556 R Similar to Actinobacillus pleuropneumoniae AfuA protein afuA SWALL:Q57512 (EMBL:U05042) (346 aa) fasta scores: E(): 1.4e-97, 69.56% id in 345 aa, and to Escherichia coli O157:H7 periplasmic ferric iron-binding protein AfuA or z0460 or ecs0415 SWALL:Q8X5J1 (EMBL:AE005215) (343 aa) fasta scores: E(): 4.2e-115, 84.01% id in 344 aa; ABC transporter iron-binding protein complement(1737522..1738556) Pectobacterium atrosepticum SCRI1043 2883247 YP_049600.1 CDS uhpC NC_004547.2 1738717 1740042 R Similar to Escherichia coli regulatory protein UhpC or b3667 SWALL:UHPC_ECOLI (SWALL:P09836) (439 aa) fasta scores: E(): 3.6e-99, 53.34% id in 433 aa, and to Yersinia pestis regulatory protein UhpC or ypo4007 SWALL:Q8ZA15 (EMBL:AJ414160) (443 aa) fasta scores: E(): 3.8e-103, 56.11% id in 417 aa; regulatory protein complement(1738717..1740042) Pectobacterium atrosepticum SCRI1043 2884202 YP_049601.1 CDS uhpB NC_004547.2 1740132 1741709 R Similar to Escherichia coli sensor protein UhpB or b3668 SWALL:UHPB_ECOLI (SWALL:P09835) (500 aa) fasta scores: E(): 1e-25, 36.17% id in 528 aa, and to Vibrio cholerae sensor protein UhpB vca0683 SWALL:Q9KLQ9 (EMBL:AE004397) (527 aa) fasta scores: E(): 3.7e-66, 42.47% id in 518 aa; two-component system sensor histidine kinase complement(1740132..1741709) Pectobacterium atrosepticum SCRI1043 2884201 YP_049602.1 CDS uhpA NC_004547.2 1741713 1742342 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri transcriptional regulatory protein UhpA or b3669 or c4593 or z5159 or ecs4606 or sf3792 SWALL:UHPA_ECOLI (SWALL:P10940) (196 aa) fasta scores: E(): 1.2e-29, 48.98% id in 196 aa; two-component system response regulator protein complement(1741713..1742342) Pectobacterium atrosepticum SCRI1043 2884200 YP_049603.1 CDS nlpA NC_004547.2 1742860 1743672 D Similar to Escherichia coli lipoprotein-28 precursor NlpA or b3661 SWALL:NLPA_ECOLI (SWALL:P04846) (272 aa) fasta scores: E(): 4e-69, 73.18% id in 261 aa; lipoprotein-28 1742860..1743672 Pectobacterium atrosepticum SCRI1043 2881283 YP_049604.1 CDS pnl NC_004547.2 1743889 1744833 D Previously sequenced as Erwinia carotovora pectin lyase Pnl SWALL:PLYD_ERWCA (SWALL:P24112) (314 aa) fasta scores: E(): 5.8e-119, 94.58% id in 314 aa; pectin lyase 1743889..1744833 Pectobacterium atrosepticum SCRI1043 2883239 YP_049605.1 CDS ECA1500 NC_004547.2 1744989 1745705 R Similar to Streptococcus thermophilus aspartate racemase SWALL:RACD_STRTR (SWALL:P29079) (243 aa) fasta scores: E(): 1.2e-13, 31.33% id in 233 aa, and to Erwinia carotovora hypothetical protein in pnlA 3'region SWALL:YPNL_ERWCA (SWALL:P32968) (150 aa) fasta scores: E(): 4.2e-52, 93.33% id in 150 aa; aspartate racemase complement(1744989..1745705) Pectobacterium atrosepticum SCRI1043 2885528 YP_049606.1 CDS ECA1501 NC_004547.2 1745928 1746827 D Similar to Escherichia coli hypothetical transcriptional regulator yjie or b4327 SWALL:YJIE_ECOLI (SWALL:P39376) (303 aa) fasta scores: E(): 3.1e-55, 50% id in 294 aa, and to Shigella flexneri transcriptional regulator LysR-type yjie or sf4191 SWALL:AAN45612 (EMBL:AE015427) (303 aa) fasta scores: E(): 1.6e-54, 49.66% id in 294 aa; LysR family transcriptional regulator 1745928..1746827 Pectobacterium atrosepticum SCRI1043 2885529 YP_049607.1 CDS gltP NC_004547.2 1746911 1748218 R Similar to Escherichia coli proton glutamate symport protein GltP or b4077 SWALL:GLTP_ECOLI (SWALL:P21345) (437 aa) fasta scores: E(): 2.1e-54, 38.47% id in 434 aa; proton glutamate symport protein complement(1746911..1748218) Pectobacterium atrosepticum SCRI1043 2882107 YP_049608.1 CDS ECA1505 NC_004547.2 1748900 1749793 R Similar to Ralstonia solanacearum probable transcription regulator protein rsp0328 or rs05438 SWALL:Q8XSY9 (EMBL:AL646078) (311 aa) fasta scores: E(): 8.3e-33, 36.86% id in 293 aa, and to Ralstonia solanacearum transcription regulator protein rsp0331 or rs00705 SWALL:Q8XSY6 (EMBL:AL646078) (298 aa) fasta scores: E(): 1.4e-29, 35.19% id in 287 aa; hypothetical protein complement(1748900..1749793) Pectobacterium atrosepticum SCRI1043 2882850 YP_049609.1 CDS citM NC_004547.2 1749904 1751217 R Similar to Bacillus subtilis mg citM SWALL:CITM_BACSU (SWALL:P55069) (433 aa) fasta scores: E(): 1.4e-80, 53.24% id in 432 aa, and to Bacillus subtilis citrate transporter CitN or CitH or n15cR SWALL:CITN_BACSU (SWALL:P42308) (426 aa) fasta scores: E(): 3.2e-91, 57.14% id in 434 aa; citrate transporter complement(1749904..1751217) Pectobacterium atrosepticum SCRI1043 2884965 YP_049610.1 CDS ECA1507 NC_004547.2 1752061 1754157 R Similar to Escherichia coli formate dehydrogenase H FdhF or b4079 SWALL:FDHF_ECOLI (SWALL:P07658) (715 aa) fasta scores: E(): 1.3e-194, 66.52% id in 699 aa; formate dehydrogenase complement(1752061..1754157) Pectobacterium atrosepticum SCRI1043 2882851 YP_049611.1 CDS ECA1509 NC_004547.2 1754695 1756374 D Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 1.1e-56, 39.57% id in 566 aa; methyl-accepting chemotaxis protein 1754695..1756374 Pectobacterium atrosepticum SCRI1043 2882852 YP_049612.1 CDS ECA1510 NC_004547.2 1756920 1758824 D Similar to Yersinia pestis similarity to some hypothetical proteins in b. subtilis ypo1941 or y2370 SWALL:Q9ZC51 (EMBL:AL031866) (639 aa) fasta scores: E(): 5.2e-172, 74.02% id in 639 aa, and to Pasteurella multocida hypothetical protein Pm0453 pSWALL:Q9CNH8 (EMBL:AE006081) (634 aa) fasta scores: E(): 9.6e-146, 64.36% id in 623 aa; iron permease 1756920..1758824 Pectobacterium atrosepticum SCRI1043 2882734 YP_049613.1 CDS ECA1511 NC_004547.2 1758941 1759468 D Similar to Yersinia pestis 102 kbases unstable region: from 1 to 119443 ypo1942 SWALL:Q9ZC52 (EMBL:AL031866) (175 aa) fasta scores: E(): 2.4e-63, 86.78% id in 174 aa, and to Pasteurella multocida hypothetical protein Pm0452 SWALL:Q9CNH9 (EMBL:AE006081) (173 aa) fasta scores: E(): 1.1e-57, 79.06% id in 172 aa; hypothetical protein 1758941..1759468 Pectobacterium atrosepticum SCRI1043 2882735 YP_049614.1 CDS ECA1512 NC_004547.2 1759692 1761089 D Similar to Yersinia pestis integral membrane protein y2367 SWALL:AAM85925 (EMBL:AE013839) (484 aa) fasta scores: E(): 1.4e-119, 63.36% id in 464 aa, and to Pasteurella multocida hypothetical protein Pm0451 SWALL:Q9CNI0 (EMBL:AE006080) (465 aa) fasta scores: E(): 2e-85, 49.67% id in 463 aa; hypothetical protein 1759692..1761089 Pectobacterium atrosepticum SCRI1043 2882736 YP_049615.1 CDS ECA1513 NC_004547.2 1761092 1762381 D Similar to Yersinia pestis similar to ABC transporter: eg ybjz_ecoli hypothetical ABC transporter ypo1944 or y2366 SWALL:AAM85924 (EMBL:AL031866) (430 aa) fasta scores: E(): 9.9e-137, 81.86% id in 430 aa, and to Pasteurella multocida hypothetical protein Pm0450 SWALL:Q9CNI1 (EMBL:AE006080) (440 aa) fasta scores: E(): 4.2e-79, 67.95% id in 440 aa; permease 1761092..1762381 Pectobacterium atrosepticum SCRI1043 2881448 YP_049616.1 CDS ECA1514 NC_004547.2 1762389 1763510 D Similar to Yersinia pestis integral membrane protein y2365 SWALL:Q8D0D2 (EMBL:AE013839) (406 aa) fasta scores: E(): 5.3e-111, 83.06% id in 372 aa, and to Pasteurella multocida hypothetical protein Pm0449 SWALL:Q9CNI2 (EMBL:AE006080) (371 aa) fasta scores: E(): 1.3e-90, 67.92% id in 371 aa; permease 1762389..1763510 Pectobacterium atrosepticum SCRI1043 2881449 YP_049617.1 CDS ECA1515 NC_004547.2 1763515 1764231 D Similar to Yersinia pestis similar to many ypo1946 or y2364 SWALL:AAM85922 (EMBL:AL031866) (237 aa) fasta scores: E(): 4.4e-66, 80.85% id in 235 aa, and to Pasteurella multocida hypothetical protein Pm0448 SWALL:Q9CNI3 (EMBL:AE006080) (227 aa) fasta scores: E(): 1.6e-59, 80% id in 220 aa; ABC transporter ATP-binding protein 1763515..1764231 Pectobacterium atrosepticum SCRI1043 2881450 YP_049618.1 CDS ECA1516 NC_004547.2 1764218 1764715 D Similar to Yersinia pestis thioredoxin-family protein y2363 SWALL:AAM85921 (EMBL:AE013839) (176 aa) fasta scores: E(): 3.3e-34, 60.49% id in 162 aa, and to Pasteurella multocida ResA or pm0447 SWALL:Q9CNI4 (EMBL:AE006080) (175 aa) fasta scores: E(): 3e-18, 40% id in 165 aa; lipoprotein 1764218..1764715 Pectobacterium atrosepticum SCRI1043 2882198 YP_049619.1 CDS ECA1517 NC_004547.2 1764766 1765743 R Similar to Escherichia coli hypothetical protein ytff or b4210 SWALL:YTFF_ECOLI (SWALL:P39314) (324 aa) fasta scores: E(): 5.1e-83, 64.24% id in 316 aa, and to Salmonella typhimurium cationic amino acid transporter ytff or stm4400 SWALL:Q8ZK75 (EMBL:AE008906) (321 aa) fasta scores: E(): 6.8e-83, 64.59% id in 322 aa; hypothetical protein complement(1764766..1765743) Pectobacterium atrosepticum SCRI1043 2882199 YP_049620.1 CDS ECA1518 NC_004547.2 1765863 1766696 R Similar to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 1.1e-30, 40.21% id in 281 aa, and to Vibrio cholerae transcriptional regulator, arac/xyls family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 4.3e-30, 35.44% id in 268 aa; AraC family transcriptional regulator complement(1765863..1766696) Pectobacterium atrosepticum SCRI1043 2882200 YP_049621.1 CDS cbl NC_004547.2 1767252 1768205 D Similar to Escherichia coli transcriptional regulator Cbl or b1987 SWALL:CBL_ECOLI (SWALL:Q47083) (316 aa) fasta scores: E(): 2.1e-84, 70.34% id in 317 aa, and to Klebsiella aerogenes transcriptional regulator Cbl SWALL:CBL_KLEAE (SWALL:Q08598) (316 aa) fasta scores: E(): 2.5e-85, 71.92% id in 317 aa; transcriptional regulator CysB-like protein 1767252..1768205 Pectobacterium atrosepticum SCRI1043 2882114 YP_049622.1 CDS gltP NC_004547.2 1768623 1769945 D carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 1768623..1769945 Pectobacterium atrosepticum SCRI1043 2882139 YP_049623.1 CDS ECA1521 NC_004547.2 1770116 1771012 D no significant database matches; hypothetical protein 1770116..1771012 Pectobacterium atrosepticum SCRI1043 2882201 YP_049624.1 CDS ECA1522 NC_004547.2 1771277 1771549 D no significant database matches; hypothetical protein 1771277..1771549 Pectobacterium atrosepticum SCRI1043 2885400 YP_049625.1 CDS ECA1523 NC_004547.2 1771636 1772739 R Similar to Escherichia coli, and Escherichia coli O6 glycerol dehydrogenase GldA or b3945 or c4904 SWALL:GLDA_ECOLI (SWALL:P32665) (367 aa) fasta scores: E(): 3.2e-32, 36.26% id in 353 aa; glycerol dehydrogenase complement(1771636..1772739) Pectobacterium atrosepticum SCRI1043 2885401 YP_049626.1 CDS ECA1524 NC_004547.2 1772857 1773723 R Similar to Pseudomonas putida ABC transporter, permease protein pp0172 SWALL:AAN65805 (EMBL:AE016774) (287 aa) fasta scores: E(): 3.9e-82, 74.2% id in 283 aa, and to Xanthomonas axonopodis permease nrtb or xac0827 SWALL:Q8PP61 (EMBL:AE011714) (294 aa) fasta scores: E(): 2e-74, 67.95% id in 284 aa; ABC transporter permease complement(1772857..1773723) Pectobacterium atrosepticum SCRI1043 2885402 YP_049627.1 CDS ECA1525 NC_004547.2 1773683 1774549 R Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa2308 SWALL:Q9I1G7 (EMBL:AE004657) (282 aa) fasta scores: E(): 2.2e-67, 75.61% id in 246 aa, and to Xanthomonas campestris ABC transporter ATP-binding component nrtcd or xcc0773 SWALL:Q8PCG1 (EMBL:AE012177) (279 aa) fasta scores: E(): 1.8e-64, 70.91% id in 251 aa; ABC transporter ATP-binding protein complement(1773683..1774549) Pectobacterium atrosepticum SCRI1043 2881204 YP_049628.1 CDS ECA1526 NC_004547.2 1774607 1775629 R Similar to Pseudomonas putida ABC transporter, periplasmic binding protein pp0170 SWALL:AAN65803 (EMBL:AE016774) (339 aa) fasta scores: E(): 9.4e-68, 56.11% id in 335 aa, and to Xanthomonas axonopodis ABC transporter substrate binding protein xac0829 SWALL:Q8PP59 (EMBL:AE011714) (338 aa) fasta scores: E(): 1.1e-54, 47.72% id in 329 aa; ABC transporter periplasmic-binding protein complement(1774607..1775629) Pectobacterium atrosepticum SCRI1043 2881205 YP_049629.1 CDS ECA1527 NC_004547.2 1775956 1776978 D Similar to Methanococcus jannaschii L-sulfolactate dehydrogenase ComC or Mdh or mj1425 SWALL:COMC_METJA (SWALL:Q58820) (344 aa) fasta scores: E(): 1.5e-25, 31.57% id in 323 aa, and to Escherichia coli O157:H7 hypothetical oxidoreductase ybic ybic or z1022 or ecs0879 SWALL:YBIC_ECO57 (SWALL:P58409) (361 aa) fasta scores: E(): 4e-52, 43.33% id in 330 aa; malate/lactate dehydrogenase 1775956..1776978 Pectobacterium atrosepticum SCRI1043 2881206 YP_049630.1 CDS tauA NC_004547.2 1777037 1778050 D Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA or SsiA or b0365 SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): 2.3e-23, 29.21% id in 332 aa, and to Rhizobium loti taurine transport system periplasmic protein mlr4517 SWALL:Q98DW7 (EMBL:AP003004) (337 aa) fasta scores: E(): 2e-27, 32.74% id in 342 aa; taurine-binding periplasmic protein 1777037..1778050 Pectobacterium atrosepticum SCRI1043 2884315 YP_049631.1 CDS tauC NC_004547.2 1778057 1778830 D Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or b0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 1.8e-40, 41.6% id in 250 aa; taurine transport system permease 1778057..1778830 Pectobacterium atrosepticum SCRI1043 2884311 YP_049632.1 CDS tauB NC_004547.2 1778827 1779630 D Similar to Escherichia coli taurine transport ATP-binding protein TauB or SsiB or b0366 SWALL:TAUB_ECOLI (SWALL:Q47538) (255 aa) fasta scores: E(): 1.3e-36, 45.18% id in 239 aa; taurine transport ATP-binding protein 1778827..1779630 Pectobacterium atrosepticum SCRI1043 2884316 YP_049633.1 CDS ECA1531 NC_004547.2 1779652 1780665 D catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 1779652..1780665 Pectobacterium atrosepticum SCRI1043 2881332 YP_049634.1 CDS ECA1532 NC_004547.2 1780662 1781378 D Similar to Streptococcus thermophilus aspartate racemase SWALL:RACD_STRTR (SWALL:P29079) (243 aa) fasta scores: E(): 9.6e-15, 30.43% id in 207 aa, and to Pyrococcus furiosus aspartate racemase pf0980 SWALL:Q8U269 (EMBL:AE010210) (228 aa) fasta scores: E(): 1.1e-27, 40.26% id in 231 aa; aspartate racemase 1780662..1781378 Pectobacterium atrosepticum SCRI1043 2881333 YP_049635.1 CDS dcuB NC_004547.2 1781498 1782838 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter complement(1781498..1782838) Pectobacterium atrosepticum SCRI1043 2884843 YP_049636.1 CDS hasF NC_004547.2 1783707 1785077 R Similar to Pseudomonas fluorescens outer membrane protein HasF SWALL:Q9RHT0 (EMBL:AB023289) (442 aa) fasta scores: E(): 1.5e-85, 54.96% id in 433 aa, and to Erwinia chrysanthemi proteases secretion protein PrtF precursor prtF SWALL:PRTF_ERWCH (SWALL:P23598) (462 aa) fasta scores: E(): 2.1e-75, 48.82% id in 424 aa. Also similar to ECA2781 (48.956% identity in 431 aa overlap); outer membrane secretion protein complement(1783707..1785077) Pectobacterium atrosepticum SCRI1043 2883277 YP_049637.1 CDS hasE NC_004547.2 1785080 1786438 R Similar to Pseudomonas fluorescens membrane fusion protein HasE SWALL:Q9RHT1 (EMBL:AB023289) (443 aa) fasta scores: E(): 2.5e-67, 52.28% id in 438 aa, and to Erwinia chrysanthemi proteases secretion protein PrtE SWALL:PRTE_ERWCH (SWALL:P23597) (448 aa) fasta scores: E(): 3.8e-62, 46.03% id in 441 aa. Also similar to ECA2782 (47.529% identity in 425 aa overlap); HlyD family secretion protein complement(1785080..1786438) Pectobacterium atrosepticum SCRI1043 2883496 YP_049638.1 CDS hasD NC_004547.2 1786503 1788362 R Similar to Pseudomonas fluorescens ABC protein HasD SWALL:Q9RHT2 (EMBL:AB023289) (580 aa) fasta scores: E(): 2.6e-129, 65.58% id in 584 aa, and to Erwinia chrysanthemi proteases secretion ATP-binding protein PrtD SWALL:PRTD_ERWCH (SWALL:P23596) (575 aa) fasta scores: E(): 5.2e-113, 59.47% id in 570 aa. Also similar to ECA2783 (58.719% id. in 562 aa overlap); type I secretion ATP-binding protein complement(1786503..1788362) Pectobacterium atrosepticum SCRI1043 2883495 YP_049639.1 CDS hasA NC_004547.2 1788622 1789239 R Similar to Serratia marcescens hemophore HasA SWALL:HASA_SERMA (SWALL:Q54450) (188 aa) fasta scores: E(): 6.1e-27, 50.27% id in 183 aa, and to Pseudomonas aeruginosa HasaP or pa3407 SWALL:O69756 (EMBL:Y16895) (205 aa) fasta scores: E(): 8.3e-25, 45.71% id in 210 aa; heme ABC transporter substrate-binding protein complement(1788622..1789239) Pectobacterium atrosepticum SCRI1043 2883494 YP_049640.1 CDS hasR NC_004547.2 1789357 1792035 R Similar to Serratia marcescens HasR protein SWALL:P72473 (EMBL:Y08983) (899 aa) fasta scores: E(): 2.1e-176, 62.03% id in 893 aa, and to Yersinia pestis TonB dependent receptor protein ypo3923 or hasr or y0313 SWALL:Q8ZA89 (EMBL:AJ414159) (830 aa) fasta scores: E(): 1.5e-86, 52.03% id in 786 aa; TonB-dependent heme receptor complement(1789357..1792035) Pectobacterium atrosepticum SCRI1043 2883278 YP_049641.1 CDS ECA1539 NC_004547.2 1792295 1793263 R Similar to Pseudomonas aeruginosa probable transmembrane sensor pa3409 SWALL:Q9HYJ6 (EMBL:AE004762) (328 aa) fasta scores: E(): 2.2e-40, 42.68% id in 328 aa, and to Pseudomonas putida transmembrane sensor, pp4607 SWALL:AAN70180 (EMBL:AE016791) (326 aa) fasta scores: E(): 2.6e-25, 36.13% id in 321 aa; transmembrane sensor protein complement(1792295..1793263) Pectobacterium atrosepticum SCRI1043 2881334 YP_049642.1 CDS ECA1540 NC_004547.2 1793363 1793872 R Similar to Pseudomonas aeruginosa RNA polymerase sigma factor pa3410 SWALL:Q9HYJ5 (EMBL:AE004762) (171 aa) fasta scores: E(): 9.6e-18, 41.76% id in 170 aa, and to Pseudomonas putida RNA polymerase sigma-70 factor, ECF subfamily pp1008 SWALL:AAN66633 (EMBL:AE016777) (170 aa) fasta scores: E(): 1.7e-11, 36.52% id in 167 aa; ECF sigma factor complement(1793363..1793872) Pectobacterium atrosepticum SCRI1043 2882552 YP_049643.1 CDS ECA1541 NC_004547.2 1794063 1794224 D no significant database matches; hypothetical protein 1794063..1794224 Pectobacterium atrosepticum SCRI1043 2882553 YP_049644.1 CDS ECA1542 NC_004547.2 1794345 1795769 D catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1794345..1795769 Pectobacterium atrosepticum SCRI1043 2882554 YP_049645.2 CDS ECA1543 NC_004547.2 1796072 1797505 D catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 1796072..1797505 Pectobacterium atrosepticum SCRI1043 2881475 YP_049646.1 CDS ECA1544 NC_004547.2 1797750 1798736 R Similar to Rhodobacter capsulatus hydroxyneurosporene methyltransferase CrtF SWALL:CRTF_RHOCA (SWALL:P17061) (393 aa) fasta scores: E(): 7.1e-08, 26.82% id in 328 aa, and to Pseudomonas stutzeri methyltransferase pdtorfP SWALL:Q9L8Q2 (EMBL:AF196567) (351 aa) fasta scores: E(): 2.5e-32, 39.88% id in 336 aa; methyltransferase complement(1797750..1798736) Pectobacterium atrosepticum SCRI1043 2881476 YP_049647.1 CDS ECA1545 NC_004547.2 1798859 1799794 D Similar to Neisseria meningitidis AraC-family transcriptional regulator nma0578 SWALL:Q9JW23 (EMBL:AL162753) (318 aa) fasta scores: E(): 2.2e-06, 26.26% id in 316 aa, and to Pseudomonas stutzeri transcriptional activator pdtorfC SWALL:Q9L8R1 (EMBL:AF196567) (235 aa) fasta scores: E(): 2e-15, 35.65% id in 230 aa; AraC family transcriptional regulator 1798859..1799794 Pectobacterium atrosepticum SCRI1043 2881477 YP_049648.1 CDS proP NC_004547.2 1800077 1801579 D Similar to Escherichia coli, and Escherichia coli O157:H7 proline/betaine transporter ProP or b4111 or z5713 or ecs5093 SWALL:PROP_ECOLI (SWALL:P30848) (500 aa) fasta scores: E(): 9.5e-152, 75.9% id in 498 aa; proline/glycine betaine transporter 1800077..1801579 Pectobacterium atrosepticum SCRI1043 2885409 YP_049649.1 CDS amn NC_004547.2 1801686 1803146 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(1801686..1803146) Pectobacterium atrosepticum SCRI1043 2884192 YP_049650.1 CDS ECA1548 NC_004547.2 1803281 1805059 R Similar to Streptomyces coelicolor transport system permease protein sco6645 or sc4g2.19 SWALL:O86691 (EMBL:AL939128) (601 aa) fasta scores: E(): 9.4e-94, 50.35% id in 562 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein nikb or atu1198 or agr_c_2209 SWALL:Q8UG44 (EMBL:AE009082) (314 aa) fasta scores: E(): 3.6e-20, 31.33% id in 300 aa; transport system membrane protein complement(1803281..1805059) Pectobacterium atrosepticum SCRI1043 2881478 YP_049651.1 CDS ECA1549 NC_004547.2 1805097 1806608 R Similar to Streptomyces coelicolor solute-binding lipoprotein sco6644 or sc4g2.18 SWALL:O86690 (EMBL:AL939128) (503 aa) fasta scores: E(): 1.4e-76, 46.09% id in 486 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu1202 or agr_c_2215 SWALL:Q8UG40 (EMBL:AE009083) (509 aa) fasta scores: E(): 4.9e-23, 33.63% id in 440 aa; ABC transporter substrate-binding protein complement(1805097..1806608) Pectobacterium atrosepticum SCRI1043 2881989 YP_049652.1 CDS ECA1550 NC_004547.2 1806619 1807866 R Similar to Streptomyces coelicolor transport system permease protein sco6646 or sc4g2.20 SWALL:O86692 (EMBL:AL939128) (436 aa) fasta scores: E(): 5e-56, 43.9% id in 394 aa, and to Mycobacterium tuberculosis membrane transport protein rv0849 or mtv043.42 SWALL:O53861 (EMBL:AL022004) (419 aa) fasta scores: E(): 9.5e-37, 35.88% id in 379 aa; transport system membrane protein complement(1806619..1807866) Pectobacterium atrosepticum SCRI1043 2881990 YP_049653.1 CDS ECA1551 NC_004547.2 1807954 1808781 R Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3437 or agr_l_2779 SWALL:Q8UAD7 (EMBL:AE009274) (311 aa) fasta scores: E(): 1.9e-27, 43.86% id in 228 aa, and to Brucella suis peptide ABC transporter, ATP-binding protein bra0404 SWALL:AAN33601 (EMBL:AE014539) (317 aa) fasta scores: E(): 7.6e-26, 35.52% id in 259 aa; ABC transporter ATP-binding protein complement(1807954..1808781) Pectobacterium atrosepticum SCRI1043 2881991 YP_049654.1 CDS ECA1552 NC_004547.2 1808781 1809659 R Similar to Bifidobacterium longum probable ATP-binding protein of ABC transporter system for peptides OppD or bl1158 SWALL:AAN24963 (EMBL:AE014740) (263 aa) fasta scores: E(): 4.5e-27, 43.08% id in 253 aa, and to Corynebacterium efficiens ABC transporter ATP-binding protein ce2227 SWALL:BAC19037 (EMBL:AP005221) (491 aa) fasta scores: E(): 1.1e-25, 41.12% id in 248 aa; ABC transporter ATP-binding protein complement(1808781..1809659) Pectobacterium atrosepticum SCRI1043 2881969 YP_049655.1 CDS ECA1553 NC_004547.2 1809799 >1810206 R Partial CDS. Similar to the C-terminal region of Photorhabdus luminescens transposase Tnp SWALL:AAN64216 (EMBL:AY144118) (328 aa) fasta scores: E(): 0.00016, 32.39% id in 142 aa, and to Salmonella typhimurium transposase stm0479 SWALL:Q8ZRA4 (EMBL:AE008718) (311 aa) fasta scores: E(): 1.9e-09, 32.03% id in 128 aa; transposase (partial) complement(1809799..>1810206) Pectobacterium atrosepticum SCRI1043 2881970 YP_049656.1 CDS ECA1554 NC_004547.2 1810381 1810557 R Doubtful CDS. No significant database matches; hypothetical protein complement(1810381..1810557) Pectobacterium atrosepticum SCRI1043 2881971 YP_049657.1 CDS ECA1555 NC_004547.2 1810590 1812383 R Similar to Pseudomonas aeruginosa hypothetical protein Pa2336 SWALL:Q9I1E2 (EMBL:AE004659) (446 aa) fasta scores: E(): 5.1e-44, 39.82% id in 467 aa, and to Salmonella typhimurium pqq enzyme repeat stm3632 SWALL:Q8ZLA7 (EMBL:AE008868) (374 aa) fasta scores: E(): 9e-07, 30.04% id in 406 aa; hypothetical protein complement(1810590..1812383) Pectobacterium atrosepticum SCRI1043 2881378 YP_049658.1 CDS astC NC_004547.2 1812400 1813209 R Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 (EMBL:AF126201) (287 aa) fasta scores: E(): 2.6e-52, 63.59% id in 239 aa, and to Bacillus subtilis aliphatic sulfonates transport ATP-binding protein SsuB SWALL:SSUB_BACSU (SWALL:P97027) (274 aa) fasta scores: E(): 1.4e-34, 43.72% id in 247 aa, and to; sulfate ester transporter ATP-binding protein complement(1812400..1813209) Pectobacterium atrosepticum SCRI1043 2882885 YP_049659.1 CDS atsB NC_004547.2 1813206 1814795 R Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 1.1e-103, 55.88% id in 510 aa, and to Bacillus subtilis aliphatic sulfonates transport permease protein SsuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 1.6e-23, 36.14% id in 249 aa; sulfate ester transporter permease complement(1813206..1814795) Pectobacterium atrosepticum SCRI1043 2881975 YP_049660.1 CDS atsR NC_004547.2 1815034 1816164 D Similar to Pseudomonas putida AtsR SWALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 2.2e-49, 45.8% id in 334 aa, and to Bacillus subtilis aliphatic sulfonates binding protein precursor SsuA SWALL:SSUA_BACSU (SWALL:P40400) (332 aa) fasta scores: E(): 9.5e-14, 26.68% id in 341 aa; sulfate ester transporter periplasmic-binding component 1815034..1816164 Pectobacterium atrosepticum SCRI1043 2881977 YP_049661.1 CDS sftR NC_004547.2 1816177 1817115 R Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 1.2e-43, 42.19% id in 301 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein sdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 1.3e-30, 36.53% id in 312 aa; LysR family transcriptional regulator complement(1816177..1817115) Pectobacterium atrosepticum SCRI1043 2884397 YP_049662.1 CDS cdh NC_004547.2 1817266 1818024 R Similar to Escherichia coli CDP-diacylglycerol pyrophosphatase Cdh or b3918 SWALL:CDH_ECOLI (SWALL:P06282) (251 aa) fasta scores: E(): 7.1e-40, 43.65% id in 252 aa; CDP-diacylglycerol pyrophosphatase complement(1817266..1818024) Pectobacterium atrosepticum SCRI1043 2881832 YP_049663.1 CDS ECA1561 NC_004547.2 1818553 1819290 R Similar to Erwinia chrysanthemi transcriptional activator protein EchR SWALL:ECHR_ERWCH (SWALL:Q46967) (250 aa) fasta scores: E(): 5e-67, 72.35% id in 246 aa, and to Erwinia carotovora transcriptional activator protein ExpR SWALL:EXPR_ERWCA (SWALL:Q47189) (245 aa) fasta scores: E(): 1.3e-57, 59.5% id in 242 aa. Also similar to ECA0106 (ExpR) (67.839% in 199 aa overlap); quorum-sensing transcriptional regulator complement(1818553..1819290) Pectobacterium atrosepticum SCRI1043 2881379 YP_049664.1 CDS ECA1562 NC_004547.2 1819842 1820456 D Similar to Xanthomonas campestris transcriptional regulator xcc2684 SWALL:Q8P7C7 (EMBL:AE012381) (205 aa) fasta scores: E(): 8.3e-18, 33.49% id in 203 aa, and to Vibrio cholerae transcriptional regulator, tetr family vc1408 SWALL:Q9KS52 (EMBL:AE004219) (200 aa) fasta scores: E(): 2e-17, 38.94% id in 190 aa; TetR family transcriptional regulator 1819842..1820456 Pectobacterium atrosepticum SCRI1043 2881380 YP_049665.1 CDS ECA1563 NC_004547.2 1820434 1821057 R Similar to Ralstonia solanacearum hypothetical protein rsc0600 rsc0600 or rs04845 SWALL:Q8Y1T9 (EMBL:AL646060) (211 aa) fasta scores: E(): 3.1e-14, 35.29% id in 187 aa, and to Pseudomonas putida conserved domain protein pp2578 SWALL:AAN68186 (EMBL:AE016783) (176 aa) fasta scores: E(): 1.9e-07, 32.5% id in 200 aa; lipoprotein complement(1820434..1821057) Pectobacterium atrosepticum SCRI1043 2885257 YP_049666.1 CDS ECA1564 NC_004547.2 1821054 1822700 R Similar to Burkholderia pseudomallei paraquat-inducible protein lpw206-207 SWALL:Q93M60 (EMBL:AY027530) (553 aa) fasta scores: E(): 1.3e-86, 45.97% id in 522 aa, and to Escherichia coli paraquat-inducible protein B PqiB or Pqi5b or b0951 SWALL:PQIB_ECOLI (SWALL:P43671) (546 aa) fasta scores: E(): 8.2e-45, 29.69% id in 532 aa; paraquat-inducible protein complement(1821054..1822700) Pectobacterium atrosepticum SCRI1043 2885258 YP_049667.1 CDS ECA1565 NC_004547.2 1822697 1823320 R Similar to Pseudomonas aeruginosa paraquat-inducible protein a SWALL:Q9APY1 (EMBL:AF241171) (237 aa) fasta scores: E(): 2.7e-27, 41.88% id in 191 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a PqiA or Pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-26, 42.71% id in 199 aa; paraquat-inducible membrane protein complement(1822697..1823320) Pectobacterium atrosepticum SCRI1043 2885259 YP_049668.1 CDS ECA1566 NC_004547.2 1823310 1823960 R Similar to Ralstonia solanacearum probable transmembrane protein rsc0603 or rs04842 SWALL:Q8Y1T6 (EMBL:AL646060) (292 aa) fasta scores: E(): 4.1e-18, 32.27% id in 189 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a pqia or pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-07, 23.4% id in 188 aa; hypothetical protein complement(1823310..1823960) Pectobacterium atrosepticum SCRI1043 2885774 YP_049669.1 CDS ECA1567 NC_004547.2 1823984 1824646 R Similar to Ralstonia solanacearum probable lipoprotein rsc2561 or rs00746 SWALL:Q8XWB3 (EMBL:AL646070) (220 aa) fasta scores: E(): 2.1e-43, 56.22% id in 217 aa, and to Bradyrhizobium japonicum Blr1214 protein blr1214 SWALL:BAC46479 (EMBL:AP005939) (220 aa) fasta scores: E(): 9.6e-41, 54.58% id in 207 aa; lipoprotein complement(1823984..1824646) Pectobacterium atrosepticum SCRI1043 2885775 YP_049670.1 CDS ECA1568 NC_004547.2 1825190 1826161 D Similar to Vibrio fischeri CheV SWALL:AAL86625 (EMBL:AY079167) (306 aa) fasta scores: E(): 1.6e-26, 34.36% id in 323 aa, and to Salmonella typhimurium chemotaxis signal transduction protein stm2314 SWALL:Q8ZNE6 (EMBL:AE008803) (333 aa) fasta scores: E(): 8.2e-81, 70.44% id in 318 aa; chemotaxis signal transduction protein 1825190..1826161 Pectobacterium atrosepticum SCRI1043 2885776 YP_049671.1 CDS ECA1570 NC_004547.2 1826507 1827346 R YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase complement(1826507..1827346) Pectobacterium atrosepticum SCRI1043 2885777 YP_049672.1 CDS tdcB NC_004547.2 1827745 1828749 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri threonine dehydratase catabolic TdcB or b3117 or c3875 or z4469 or ecs3997 or sf3157 SWALL:THD2_ECOLI (SWALL:P05792) (329 aa) fasta scores: E(): 9.6e-33, 38.14% id in 312 aa, and to Thermotoga maritima threonine dehydratase catabolic tm0356 SWALL:Q9WYJ1 (EMBL:AE001716) (401 aa) fasta scores: E(): 6.1e-41, 41.32% id in 317 aa; threonine dehydratase catabolic complement(1827745..1828749) Pectobacterium atrosepticum SCRI1043 2884313 YP_049673.1 CDS ECA1572 NC_004547.2 1828802 1829152 D Similar to Bradyrhizobium japonicum transcriptional regulatory protein blr1414 SWALL:BAC46679 (EMBL:AP005940) (100 aa) fasta scores: E(): 1e-13, 52.22% id in 90 aa, and to Rhizobium loti hypothetical protein Mll3509 mll3509 SWALL:Q98G33 (EMBL:AP003002) (100 aa) fasta scores: E(): 1.1e-15, 47.87% id in 94 aa; transcriptional regulator ArsR 1828802..1829152 Pectobacterium atrosepticum SCRI1043 2884901 YP_049674.1 CDS ECA1573 NC_004547.2 1829217 1830416 R Similar to Escherichia coli bicyclomycin resistance protein Bcr or BicA or BicR or Sur or SuxA or b2182 SWALL:BCR_ECOLI (SWALL:P28246) (396 aa) fasta scores: E(): 5e-40, 31.1% id in 389 aa, and to Ralstonia solanacearum probable transport transmembrane protein rsc0216 or rs00648 SWALL:Q8Y2W6 (EMBL:AL646058) (409 aa) fasta scores: E(): 7.1e-61, 45.26% id in 380 aa; transporter complement(1829217..1830416) Pectobacterium atrosepticum SCRI1043 2884902 YP_049675.1 CDS ECA1574 NC_004547.2 1830586 1831821 R Similar to Rhizobium meliloti transport protein r00217 or smc02892 SWALL:Q92SY1 (EMBL:AL591782) (492 aa) fasta scores: E(): 9.3e-32, 44.06% id in 438 aa, and to Rhizobium loti probable transmembrane efflux protein mlr1142 SWALL:Q98L80 (EMBL:AP002996) (490 aa) fasta scores: E(): 4.9e-27, 37.55% id in 466 aa; transporter complement(1830586..1831821) Pectobacterium atrosepticum SCRI1043 2884903 YP_049676.1 CDS ECA1575 NC_004547.2 1831876 1832349 D Similar to Rhizobium leguminosarum transcriptional regulator HmrR SWALL:HMMR_RHILV (SWALL:Q9X5V4) (129 aa) fasta scores: E(): 3.2e-07, 33.6% id in 125 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa5116 SWALL:Q9HU68 (EMBL:AE004924) (141 aa) fasta scores: E(): 1.4e-21, 54.03% id in 124 aa; MerR family transcriptional regulator 1831876..1832349 Pectobacterium atrosepticum SCRI1043 2884530 YP_049677.1 CDS ECA1576 NC_004547.2 1832392 1832559 D no significant database matches; hypothetical protein 1832392..1832559 Pectobacterium atrosepticum SCRI1043 2884531 YP_049678.1 CDS ECA1577 NC_004547.2 1832682 1833305 D Weakly similar to Xylella fastidiosa hypothetical protein Xf2750 xf2750 SWALL:Q9P9X0 (EMBL:AE004081) (201 aa) fasta scores: E(): 6.5, 24.61% id in 195 aa; lipoprotein 1832682..1833305 Pectobacterium atrosepticum SCRI1043 2884532 YP_049679.1 CDS ECA1578 NC_004547.2 1833671 1834210 D Similar to Yersinia pestis nucleoprotein/polynucleotide-associated enzyme y2589 SWALL:AAM86144 (EMBL:AE013861) (179 aa) fasta scores: E(): 8.1e-50, 93.29% id in 179 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein stm4192 or sty4409 SWALL:Q8XF14 (EMBL:AE008896) (179 aa) fasta scores: E(): 3.5e-48, 88.26% id in 179 aa; hypothetical protein 1833671..1834210 Pectobacterium atrosepticum SCRI1043 2884522 YP_049680.1 CDS ECA1579 NC_004547.2 1834370 1835260 D catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 1834370..1835260 Pectobacterium atrosepticum SCRI1043 2884523 YP_049681.1 CDS ECA1580 NC_004547.2 1835450 1835932 D Similar to Myxococcus xanthus CspB SWALL:Q9ZFK8 (EMBL:AF098529) (66 aa) fasta scores: E(): 0.057, 39.7% id in 68 aa, and to Yersinia pestis cold-shock protein y1165 SWALL:AAM84742 (EMBL:AE013720) (163 aa) fasta scores: E(): 2.6e-35, 66.24% id in 157 aa; cold-shock protein 1835450..1835932 Pectobacterium atrosepticum SCRI1043 2884524 YP_049682.1 CDS ECA1581 NC_004547.2 1836065 1836310 D Similar to Escherichia coli, and Shigella flexneri hypothetical protein ymja or b1295 or sf1300 SWALL:YMJA_ECOLI (SWALL:P76036) (81 aa) fasta scores: E(): 1.5e-20, 72.84% id in 81 aa; hypothetical protein 1836065..1836310 Pectobacterium atrosepticum SCRI1043 2884727 YP_049683.1 CDS ECA1582 NC_004547.2 <1836537 1836671 D Partial CDS. Similar to the N-terminal regions of Escherichia coli probable transposase for transposon tn903 SWALL:TRA2_ECOLI (SWALL:P03009) (307 aa) fasta scores: E(): 2.8e-09, 74.41% id in 43 aa, and to Bacteriophage HK022 is903 transposase SWALL:Q9MCT5 (EMBL:AF069308) (307 aa) fasta scores: E(): 2.8e-09, 74.41% id in 43 aa; transposase (partial) <1836537..1836671 Pectobacterium atrosepticum SCRI1043 2884728 YP_049684.1 CDS ECA1583 NC_004547.2 1836751 >1837002 R Partial CDS. Similar to Salmonella typhimurium integrase protein stm0947 SWALL:Q8ZQE2 (EMBL:AE008740) (227 aa) fasta scores: E(): 0.0015, 57.89% id in 38 aa, and to Pseudomonas syringae ispsy11, transposase orfb pspto4511 SWALL:AAO57959 (EMBL:AE016872) (265 aa) fasta scores: E(): 0.03, 35.38% id in 65 aa; integrase complement(1836751..>1837002) Pectobacterium atrosepticum SCRI1043 2884729 YP_049685.1 CDS ECA1584 NC_004547.2 1837757 1837906 R Similar to Anabaena sp. hypothetical protein Asl3923 SWALL:Q8YQB0 (EMBL:AP003594) (53 aa) fasta scores: E(): 1.3e-11, 63.63% id in 44 aa, and to Synechococcus elongatus Tsr2277 protein tsr2277 SWALL:Q8DGN9 (EMBL:AP005376) (51 aa) fasta scores: E(): 1.2e-10, 56.09% id in 41 aa; hypothetical protein complement(1837757..1837906) Pectobacterium atrosepticum SCRI1043 2884747 YP_049686.1 CDS ECA1585 NC_004547.2 1837903 1839441 R Similar to Pseudomonas putida conserved hypothetical protein pp2732 SWALL:AAN68340 (EMBL:AE016784) (508 aa) fasta scores: E(): 1.6e-149, 66.86% id in 507 aa, and to Caulobacter crescentus hypothetical protein Cc0646 SWALL:Q9AAF5 (EMBL:AE005740) (509 aa) fasta scores: E(): 9.5e-105, 50.39% id in 502 aa; hypothetical protein complement(1837903..1839441) Pectobacterium atrosepticum SCRI1043 2884748 YP_049687.1 CDS ECA1586 NC_004547.2 1840176 1840934 D Similar to Ralstonia solanacearum probable dehydrogenase/reductase oxidoreductase protein rsc2597 or rs00845 SWALL:Q8XW78 (EMBL:AL646070) (252 aa) fasta scores: E(): 7.9e-79, 84.92% id in 252 aa, and to Xanthomonas campestris reductase xcc3212 SWALL:Q8P5X1 (EMBL:AE012438) (276 aa) fasta scores: E(): 1.6e-41, 52.19% id in 251 aa; short chain dehydrogenase 1840176..1840934 Pectobacterium atrosepticum SCRI1043 2884749 YP_049688.1 CDS ECA1587 NC_004547.2 1840982 1841674 D Similar to Sus scrofa glutathione transferase omega 1 gsto1 SWALL:GTO1_PIG (SWALL:Q9N1F5) (241 aa) fasta scores: E(): 4.1e-14, 29.29% id in 198 aa, and to Ralstonia solanacearum probable glutathione-s-transferase protein rsc2594 or rs00842 SWALL:Q8XW81 (EMBL:AL646070) (224 aa) fasta scores: E(): 3.2e-61, 70.08% id in 224 aa; glutathione-S-transferase 1840982..1841674 Pectobacterium atrosepticum SCRI1043 2884750 YP_049689.1 CDS ECA1588 NC_004547.2 1841727 1842110 D Similar to Ralstonia solanacearum hypothetical protein rsc2590 or rs00838 SWALL:Q8XW85 (EMBL:AL646070) (128 aa) fasta scores: E(): 7.4e-27, 59.35% id in 123 aa, and to Caulobacter crescentus hypothetical protein Cc2961 SWALL:Q9A482 (EMBL:AE005960) (129 aa) fasta scores: E(): 0.0056, 34.14% id in 123 aa; hypothetical protein 1841727..1842110 Pectobacterium atrosepticum SCRI1043 2884645 YP_049690.1 CDS lhr NC_004547.2 1842241 1847037 R similar to the DNA and RNA helicase superfamily II and eukaryotic DEAD family of helicases; longest known protein in E. coli; ATP-dependent helicase Lhr complement(1842241..1847037) Pectobacterium atrosepticum SCRI1043 2883336 YP_049691.1 CDS ECA1590 NC_004547.2 1847045 1847386 R Similar to Rhizobium loti hypothetical protein Mlr0026 SWALL:Q98NQ9 (EMBL:AP002994) (107 aa) fasta scores: E(): 2.7e-08, 34.61% id in 104 aa, and to Caulobacter crescentus hypothetical protein Cc0401 SWALL:Q9AB33 (EMBL:AE005713) (127 aa) fasta scores: E(): 1e-06, 29.78% id in 94 aa; hypothetical protein complement(1847045..1847386) Pectobacterium atrosepticum SCRI1043 2884646 YP_049692.1 CDS ECA1591 NC_004547.2 1847462 1848211 R Similar over its C-terminal region to many including Salmonella typhimurium cytoplasmic protein ybdf or stm0579 SWALL:Q8ZR44 (EMBL:AE008722) (122 aa) fasta scores: E(): 1.8e-09, 33.89% id in 118 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ybdf or b0579 or z0718 or ecs0617 SWALL:YBDF_ECOLI (SWALL:P39454) (122 aa) fasta scores: E(): 2.2e-07, 33.04% id in 115 aa; hypothetical protein complement(1847462..1848211) Pectobacterium atrosepticum SCRI1043 2884647 YP_049693.1 CDS ECA1592 NC_004547.2 1848239 1849141 R Similar to Streptomyces hygroscopicus acetyl-hydrolase Bah SWALL:BAH_STRHY (SWALL:Q01109) (299 aa) fasta scores: E(): 8.6e-34, 43.01% id in 265 aa, and to Streptomyces viridochromogenes N-acetylphosphinothricin-tripetide- deacetylase Dea SWALL:Q56171 (EMBL:X65195) (299 aa) fasta scores: E(): 1.7e-33, 43.34% id in 263 aa; acetyl-hydrolase complement(1848239..1849141) Pectobacterium atrosepticum SCRI1043 2884774 YP_049694.1 CDS ECA1593 NC_004547.2 1849384 1850334 D Similar to Xanthomonas campestris transcriptional regulator xcc3932 SWALL:Q8P3Y5 (EMBL:AE012514) (317 aa) fasta scores: E(): 2.6e-22, 42.58% id in 310 aa; AraC family transcriptional regulator 1849384..1850334 Pectobacterium atrosepticum SCRI1043 2884775 YP_049695.1 CDS ECA1594 NC_004547.2 1850490 1850948 D no significant database matches; hypothetical protein 1850490..1850948 Pectobacterium atrosepticum SCRI1043 2884776 YP_049696.1 CDS ECA1595 NC_004547.2 1851097 1851453 D Similar to Ralstonia solanacearum hypothetical protein rsc2592 or rs00840 SWALL:Q8XW83 (EMBL:AL646070) (118 aa) fasta scores: E(): 2.1e-19, 43.96% id in 116 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1254 SWALL:BAC13210 (EMBL:AP004597) (118 aa) fasta scores: E(): 2.9e-19, 41.02% id in 117 aa; hypothetical protein 1851097..1851453 Pectobacterium atrosepticum SCRI1043 2885051 YP_049697.1 CDS ECA1596 NC_004547.2 1851992 1853839 R Weakly similar to Thermoplasma volcanium hypothetical protein tv0230 or tvg0239138 SWALL:Q97C74 (EMBL:AP000991) (511 aa) fasta scores: E(): 1.4e-09, 22.16% id in 582 aa, and to Xanthomonas axonopodis hypothetical protein Xac2444 SWALL:Q8PJT6 (EMBL:AE011881) (705 aa) fasta scores: E(): 5.9e-09, 24.46% id in 556 aa; hypothetical protein complement(1851992..1853839) Pectobacterium atrosepticum SCRI1043 2885052 YP_049698.1 CDS ECA1597 NC_004547.2 1853836 1854879 R no significant database matches; hypothetical protein complement(1853836..1854879) Pectobacterium atrosepticum SCRI1043 2885053 YP_049699.1 CDS ECA1598 NC_004547.2 1855523 1856875 D Similar to Bacillus anthracis pxo2-73 bxb0100 SWALL:Q9RMW1 (EMBL:AF188935) (541 aa) fasta scores: E(): 2.2e-22, 31.18% id in 356 aa, and to Streptococcus agalactiae protein of unknown function sag1992 SWALL:AAN00852 (EMBL:AE014281) (518 aa) fasta scores: E(): 8.7e-09, 32.91% id in 237 aa; hypothetical protein 1855523..1856875 Pectobacterium atrosepticum SCRI1043 2883933 YP_049700.1 CDS ardC NC_004547.2 1857403 1858335 D Similar to Escherichia coli ArdC antirestriction protein ArdC SWALL:Q9R2K1 (EMBL:AF143206) (297 aa) fasta scores: E(): 2.2e-39, 47.69% id in 239 aa; antirestriction protein 1857403..1858335 Pectobacterium atrosepticum SCRI1043 2884147 YP_049701.1 CDS ECA1601 NC_004547.2 <1858446 1858988 D Partial CDS. Similar to the C-terminal regions of Salmonella typhi is30 transposase r0046 SWALL:AAF69884 (EMBL:AF250878) (383 aa) fasta scores: E(): 2.5e-31, 51.22% id in 164 aa, and to Escherichia coli transposase insi for insertion sequence element is30b/c/d (insi1 or b0256) and (insi2 or b1404) and (insi3 or b4284) SWALL:INSI_ECOLI (SWALL:P37246) (383 aa) fasta scores: E(): 2.5e-31, 51.22% id in 164 aa; transposase (partial) <1858446..1858988 Pectobacterium atrosepticum SCRI1043 2883934 YP_049702.1 CDS ECA1602 NC_004547.2 1859015 1859923 R Similar to Pseudomonas fluorescens transcriptional regulator SWALL:AAN32873 (EMBL:AF461725) (238 aa) fasta scores: E(): 4.6e-57, 60.92% id in 238 aa, and to Ralstonia solanacearum probable transcription regulator transcription regulator protein rsp1593 or rs02150 SWALL:Q8XPP5 (EMBL:AL646085) (296 aa) fasta scores: E(): 6e-39, 40.13% id in 294 aa. Also similar to ECA2976 (96.026% id. in 302 aa overlap); LysR family transcriptional regulator complement(1859015..1859923) Pectobacterium atrosepticum SCRI1043 2883935 YP_049703.1 CDS arsC NC_004547.2 1860348 1860773 R Similar to Escherichia coli, and Shigella flexneri arsenate reductase ArsC or ArsG or b3503 or sf3536 SWALL:ARSC_ECOLI (SWALL:P37311) (141 aa) fasta scores: E(): 1.1e-44, 81.56% id in 141 aa; arsenate reductase complement(1860348..1860773) Pectobacterium atrosepticum SCRI1043 2884125 YP_049704.1 CDS arsB NC_004547.2 1860786 1862075 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri arsenical pump membrane protein ArsB or ArsF or b3502 or z4904 or ecs4374 or sf3535 SWALL:ARSB_ECOLI (SWALL:P37310) (429 aa) fasta scores: E(): 1.3e-139, 85.54% id in 429 aa; arsenical pump membrane protein complement(1860786..1862075) Pectobacterium atrosepticum SCRI1043 2884124 YP_049705.1 CDS arsR NC_004547.2 1862120 1862440 R regulates the expression of of the arsRBC involved in resistance to arsenic; DNA-binding transcriptional repressor ArsR complement(1862120..1862440) Pectobacterium atrosepticum SCRI1043 2884117 YP_049706.1 CDS arsH NC_004547.2 1862527 1863225 D Similar to Yersinia enterocolitica ArsH SWALL:P74987 (EMBL:U58366) (232 aa) fasta scores: E(): 2.8e-86, 91.81% id in 232 aa, and to Salmonella typhimurium ArsH protein SWALL:Q8L245 (EMBL:AP005147) (216 aa) fasta scores: E(): 6.4e-69, 80.09% id in 211 aa; arsenical resistance protein 1862527..1863225 Pectobacterium atrosepticum SCRI1043 2884116 YP_049707.1 CDS ECA1607 NC_004547.2 1863343 1863630 R no significant database matches; hypothetical protein complement(1863343..1863630) Pectobacterium atrosepticum SCRI1043 2883904 YP_049708.1 CDS mobC NC_004547.2 1863738 1864484 R Similar to Enterobacter cloacae MobC protein SWALL:Q9REB5 (EMBL:AJ224861) (243 aa) fasta scores: E(): 7.6e-14, 31.05% id in 219 aa; mobilization protein complement(1863738..1864484) Pectobacterium atrosepticum SCRI1043 2885445 YP_049709.1 CDS ECA1609 NC_004547.2 1864495 1866396 R Similar to Enterobacter cloacae MobB protein SWALL:Q9REB6 (EMBL:AJ224861) (653 aa) fasta scores: E(): 1.1e-40, 29.89% id in 582 aa, and to Escherichia coli mobilization protein A MobA or B SWALL:MBA1_ECOLI (SWALL:P08098) (529 aa) fasta scores: E(): 1.8e-18, 28.96% id in 366 aa; mobilization protein complement(1864495..1866396) Pectobacterium atrosepticum SCRI1043 2883905 YP_049710.1 CDS ECA1610 NC_004547.2 1866854 1867036 R no significant database matches; hypothetical protein complement(1866854..1867036) Pectobacterium atrosepticum SCRI1043 2883906 YP_049711.1 CDS ECA1611 NC_004547.2 1867160 1867465 R no significant database matches; hypothetical protein complement(1867160..1867465) Pectobacterium atrosepticum SCRI1043 2883907 YP_049712.1 CDS kikA NC_004547.2 1867481 1867786 R Similar to Escherichia coli, and Salmonella typhimurium pkm101 conjugation proteins KikA SWALL:Q46691 (EMBL:U09868) (104 aa) fasta scores: E(): 5.5e-16, 49.47% id in 95 aa; plasmid conjugation protein complement(1867481..1867786) Pectobacterium atrosepticum SCRI1043 2883970 YP_049713.1 CDS virB11 NC_004547.2 1867875 1868891 R Similar to Escherichia coli Virb11 protein VirB11 SWALL:Q91UW6 (EMBL:AJ297913) (355 aa) fasta scores: E(): 1e-37, 38.06% id in 331 aa, and to Actinobacillus actinomycetemcomitans transport associated protein 9 tag9 SWALL:Q9AGG6 (EMBL:AF332996) (340 aa) fasta scores: E(): 7.1e-48, 46.01% id in 326 aa; conjugal transfer protein complement(1867875..1868891) Pectobacterium atrosepticum SCRI1043 2882696 YP_049714.1 CDS virB10 NC_004547.2 1868881 1870200 R Similar to Escherichia coli Virb10 protein VirB10 SWALL:Q91UW7 (EMBL:AJ297913) (383 aa) fasta scores: E(): 1.2e-23, 32.41% id in 401 aa; conjugal transfer protein complement(1868881..1870200) Pectobacterium atrosepticum SCRI1043 2882706 YP_049715.1 CDS virB9 NC_004547.2 1870197 1871090 R Similar to Escherichia coli VirB9 protein VirB9 SWALL:Q91UW8 (EMBL:AJ297913) (290 aa) fasta scores: E(): 2.5e-15, 32.52% id in 289 aa; conjugal transfer protein complement(1870197..1871090) Pectobacterium atrosepticum SCRI1043 2882693 YP_049716.1 CDS virB8 NC_004547.2 1871087 1871770 R Similar to Escherichia coli VirB8 protein VirB8 SWALL:Q91UW9 (EMBL:AJ297913) (236 aa) fasta scores: E(): 2.8e-14, 29.46% id in 224 aa; conjugal transfer protein complement(1871087..1871770) Pectobacterium atrosepticum SCRI1043 2882692 YP_049717.1 CDS virB7 NC_004547.2 1871763 1871903 R Similar to Escherichia coli VirB7 protein VirB7 SWALL:Q91UX0 (EMBL:AJ297913) (54 aa) fasta scores: E(): 0.7, 40% id in 40 aa; conjugal transfer protein complement(1871763..1871903) Pectobacterium atrosepticum SCRI1043 2882691 YP_049718.1 CDS virB6 NC_004547.2 1871989 1873029 R Similar to Escherichia coli VirB6 protein VirB6 SWALL:Q91UX1 (EMBL:AJ297913) (360 aa) fasta scores: E(): 9e-06, 21.12% id in 355 aa; conjugal transfer protein complement(1871989..1873029) Pectobacterium atrosepticum SCRI1043 2882690 YP_049719.1 CDS ECA1618 NC_004547.2 1873103 1873378 R Similar to Yersinia pestis Orf4 SWALL:Q9RPN3 (EMBL:AF152923) (90 aa) fasta scores: E(): 4.9e-05, 40.29% id in 67 aa, and to Escherichia coli Eex protein SWALL:Q9EUF6 (EMBL:AJ006342) (86 aa) fasta scores: E(): 0.0002, 30.38% id in 79 aa; plasmid protein complement(1873103..1873378) Pectobacterium atrosepticum SCRI1043 2883856 YP_049720.1 CDS virB5 NC_004547.2 1873390 1874118 R Similar to Escherichia coli VirB5 protein VirB5 SWALL:Q91UX3 (EMBL:AJ297913) (239 aa) fasta scores: E(): 0.00064, 22.88% id in 236 aa; conjugal transfer protein complement(1873390..1874118) Pectobacterium atrosepticum SCRI1043 2882689 YP_049721.1 CDS virB4 NC_004547.2 1874142 1876889 R Similar to Escherichia coli VirB4 protein VirB4 SWALL:Q91UX4 (EMBL:AJ297913) (826 aa) fasta scores: E(): 2.4e-90, 34.71% id in 818 aa; conjugal transfer protein complement(1874142..1876889) Pectobacterium atrosepticum SCRI1043 2882698 YP_049722.1 CDS virB2 NC_004547.2 1876901 1877179 R Similar to Escherichia coli VirB2 protein VirB2 SWALL:Q91UX6 (EMBL:AJ297913) (102 aa) fasta scores: E(): 0.0022, 30.66% id in 75 aa; conjugal transfer protein complement(1876901..1877179) Pectobacterium atrosepticum SCRI1043 2882697 YP_049723.1 CDS virB1 NC_004547.2 1877179 1877826 R Similar to Escherichia coli VirB1 protein VirB1 SWALL:Q91UX8 (EMBL:AJ297913) (253 aa) fasta scores: E(): 1.1e-12, 32.27% id in 220 aa; conjugal transfer protein complement(1877179..1877826) Pectobacterium atrosepticum SCRI1043 2882705 YP_049724.1 CDS ECA1623 NC_004547.2 1877904 1878182 R no significant database matches; hypothetical protein complement(1877904..1878182) Pectobacterium atrosepticum SCRI1043 2883857 YP_049725.1 CDS ECA1624 NC_004547.2 1878819 1880114 D no significant database matches; hypothetical protein 1878819..1880114 Pectobacterium atrosepticum SCRI1043 2883858 YP_049726.1 CDS traR NC_004547.2 1880218 1880427 R Similar to Escherichia coli TraR protein TraR SWALL:TRAR_ECOLI (SWALL:P41065) (73 aa) fasta scores: E(): 1e-06, 41.66% id in 72 aa; conjugal transfer protein complement(1880218..1880427) Pectobacterium atrosepticum SCRI1043 2884256 YP_049727.1 CDS ECA1626 NC_004547.2 1880417 1881001 R Similar to Yersinia pestis orf 77 ypo1902 or y2407 SWALL:AAM85965 (EMBL:AL031866) (193 aa) fasta scores: E(): 2.3e-46, 62.17% id in 193 aa, and to Yersinia pseudotuberculosis hypothetical 18.9 kDa protein SWALL:Q9X9G3 (EMBL:AJ236887) (166 aa) fasta scores: E(): 1.6e-38, 62.04% id in 166 aa; hypothetical protein complement(1880417..1881001) Pectobacterium atrosepticum SCRI1043 2883770 YP_049728.1 CDS alpA NC_004547.2 1881018 1881212 R Similar to Escherichia coli prophage cp4-57 regulatory protein AlpA or Alp or b2624 SWALL:ALPA_ECOLI (SWALL:P33997) (70 aa) fasta scores: E(): 0.00017, 37.28% id in 59 aa, and to Yersinia pseudotuberculosis DNA-binding protein SWALL:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 4.7e-21, 86.88% id in 61 aa; prophage regulatory protein complement(1881018..1881212) Pectobacterium atrosepticum SCRI1043 2884195 YP_049729.1 CDS ECA1628 NC_004547.2 1881482 1882006 R Similar to Yersinia pestis orf 74 SWALL:Q9R7V2 (EMBL:AL031866) (168 aa) fasta scores: E(): 2.1e-05, 36.14% id in 83 aa, and to Yersinia pseudotuberculosis hypothetical 35.5 kDa protein SWALL:Q9X9G6 (EMBL:AJ236887) (308 aa) fasta scores: E(): 5.4e-14, 39% id in 141 aa; hypothetical protein complement(1881482..1882006) Pectobacterium atrosepticum SCRI1043 2883771 YP_049730.1 CDS ECA1629 NC_004547.2 1883005 1883862 D Similar to Pseudomonas putida PobR protein SWALL:Q9R9T2 (EMBL:AJ251792) (292 aa) fasta scores: E(): 1.4e-12, 29.16% id in 240 aa, and to Xanthomonas campestris transcriptional regulator xcc3932 SWALL:Q8P3Y5 (EMBL:AE012514) (317 aa) fasta scores: E(): 2.4e-17, 36.59% id in 276 aa; AraC family transcriptional regulator 1883005..1883862 Pectobacterium atrosepticum SCRI1043 2883772 YP_049731.1 CDS ECA1632 NC_004547.2 1886845 1888533 D no significant database matches; hypothetical protein 1886845..1888533 Pectobacterium atrosepticum SCRI1043 2883672 YP_049732.1 CDS ECA1633 NC_004547.2 1888810 1889685 D Similar to Escherichia coli O6 hypothetical protein c2416 SWALL:AAN80875 (EMBL:AE016762) (297 aa) fasta scores: E(): 4.4e-35, 38.65% id in 282 aa; hypothetical protein 1888810..1889685 Pectobacterium atrosepticum SCRI1043 2883673 YP_049733.1 CDS ECA1634 NC_004547.2 1890004 1890399 D Weakly similar to Pyrococcus horikoshii hypothetical protein Ph1126 ph1126 SWALL:O58853 (EMBL:AP000005) (207 aa) fasta scores: E(): 4.7, 31.53% id in 111 aa; hypothetical protein 1890004..1890399 Pectobacterium atrosepticum SCRI1043 2883642 YP_049734.1 CDS ECA1635 NC_004547.2 1890477 1890773 D no significant database matches; hypothetical protein 1890477..1890773 Pectobacterium atrosepticum SCRI1043 2883643 YP_049735.1 CDS ECA1636 NC_004547.2 1890823 1891059 D no significant database matches; hypothetical protein 1890823..1891059 Pectobacterium atrosepticum SCRI1043 2883644 YP_049736.1 CDS ECA1637 NC_004547.2 1891086 1891436 D no significant database matches; hypothetical protein 1891086..1891436 Pectobacterium atrosepticum SCRI1043 2883592 YP_049737.1 CDS ECA1638 NC_004547.2 1891505 1891747 D Similar to Erwinia chrysanthemi Hns regulatory protein hnS SWALL:O53007 (EMBL:X89444) (135 aa) fasta scores: E(): 0.039, 33.75% id in 80 aa, and to Escherichia coli O6 hypothetical protein c2413 SWALL:Q8FGG4 (EMBL:AE016762) (80 aa) fasta scores: E(): 3.3e-18, 75.64% id in 78 aa; Hns-like DNA-binding protein 1891505..1891747 Pectobacterium atrosepticum SCRI1043 2883593 YP_049738.1 CDS ECA1639 NC_004547.2 1891965 1893239 D no significant database matches; hypothetical protein 1891965..1893239 Pectobacterium atrosepticum SCRI1043 2883594 YP_049739.1 CDS ECA1640 NC_004547.2 1893333 1893812 R Similar to Escherichia coli O6 hypothetical protein c2410 SWALL:AAN80869 (EMBL:AE016762) (159 aa) fasta scores: E(): 4.3e-31, 63.52% id in 159 aa; hypothetical protein complement(1893333..1893812) Pectobacterium atrosepticum SCRI1043 2883595 YP_049740.1 CDS ECA1641 NC_004547.2 1893900 1894037 D no significant database matches; hypothetical protein 1893900..1894037 Pectobacterium atrosepticum SCRI1043 2883415 YP_049741.1 CDS ECA1642 NC_004547.2 1894272 1894526 D no significant database matches; hypothetical protein 1894272..1894526 Pectobacterium atrosepticum SCRI1043 2883416 YP_049742.1 CDS ECA1643 NC_004547.2 1894837 1895358 R no significant database matches; hypothetical protein complement(1894837..1895358) Pectobacterium atrosepticum SCRI1043 2883417 YP_049743.1 CDS ECA1644 NC_004547.2 1895384 1896118 R no significant database matches; DNA-binding protein complement(1895384..1896118) Pectobacterium atrosepticum SCRI1043 2883370 YP_049744.1 CDS ECA1645 NC_004547.2 1897721 1898485 D Similar to Zymomonas mobilis 20.9 kDa protein SWALL:21KD_ZYMMO (SWALL:P15256) (184 aa) fasta scores: E(): 1.9e-11, 31.97% id in 172 aa, and to Pseudoalteromonas sp. PS1M3 replication protein Rep SWALL:Q9LCJ6 (EMBL:AB022096) (193 aa) fasta scores: E(): 7.1e-11, 32.95% id in 176 aa; hypothetical protein 1897721..1898485 Pectobacterium atrosepticum SCRI1043 2883371 YP_049745.1 CDS ECA1646 NC_004547.2 1898492 1899034 R Similar to Escherichia coli O157:H7 hypothetical protein z5954 or ecs5314 SWALL:Q8XB64 (EMBL:AE005667) (180 aa) fasta scores: E(): 9.5e-40, 55% id in 180 aa; hypothetical protein complement(1898492..1899034) Pectobacterium atrosepticum SCRI1043 2883372 YP_049746.1 CDS ECA1647 NC_004547.2 1899338 1900024 D no significant database matches; hypothetical protein 1899338..1900024 Pectobacterium atrosepticum SCRI1043 2883350 YP_049747.1 CDS ECA1648 NC_004547.2 1900098 1900667 D no significant database matches; hypothetical protein 1900098..1900667 Pectobacterium atrosepticum SCRI1043 2883351 YP_049748.1 CDS ECA1649 NC_004547.2 1900959 1901330 D no significant database matches; hypothetical protein 1900959..1901330 Pectobacterium atrosepticum SCRI1043 2883352 YP_049749.1 CDS ECA1650 NC_004547.2 1901396 1901848 D no significant database matches; hypothetical protein 1901396..1901848 Pectobacterium atrosepticum SCRI1043 2883319 YP_049750.1 CDS ECA1651 NC_004547.2 1901913 1902167 R no significant database matches; hypothetical protein complement(1901913..1902167) Pectobacterium atrosepticum SCRI1043 2883320 YP_049751.1 CDS ECA1652 NC_004547.2 1902248 1903087 R Similar to Yersinia enterocolitica IS1400 transposase B Trp1400B SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): 1.2e-64, 61.83% id in 262 aa, and to Desulfovibrio vulgaris transposase orfb SWALL:O31218 (EMBL:AF034211) (310 aa) fasta scores: E(): 1.3e-64, 59.61% id in 260 aa; transposase complement(1902248..1903087) Pectobacterium atrosepticum SCRI1043 2883321 YP_049752.1 CDS ECA1653 NC_004547.2 1903090 1903356 R Similar to Escherichia coli O6 transposase c2472 SWALL:AAN80931 (EMBL:AE016762) (88 aa) fasta scores: E(): 2e-22, 72.72% id in 88 aa, and to Yersinia pestis, and Yersinia pseudotuberculosis low calcium response locus protein S LcrS or ypcd1.63 or y5015 or y0018 SWALL:LCRS_YERPE (SWALL:Q00931) (88 aa) fasta scores: E(): 1.7e-29, 96.59% id in 88 aa; transposase complement(1903090..1903356) Pectobacterium atrosepticum SCRI1043 2883261 YP_049753.1 CDS ECA1654 NC_004547.2 1903582 1903959 R Similar to Escherichia coli O157:H7 z3937 protein z3937 or ecs3506 SWALL:Q8X978 (EMBL:AE005493) (131 aa) fasta scores: E(): 4.5e-17, 44.82% id in 116 aa; hypothetical protein complement(1903582..1903959) Pectobacterium atrosepticum SCRI1043 2883262 YP_049754.1 CDS ECA1655 NC_004547.2 1904592 1905143 D Similar to Escherichia coli O6 hypothetical protein c2401 SWALL:AAN80860 (EMBL:AE016762) (191 aa) fasta scores: E(): 1.8e-35, 55.97% id in 184 aa; lipoprotein 1904592..1905143 Pectobacterium atrosepticum SCRI1043 2883263 YP_049755.1 CDS ECA1656 NC_004547.2 1905154 1905429 D no significant database matches; hypothetical protein 1905154..1905429 Pectobacterium atrosepticum SCRI1043 2883264 YP_049756.1 CDS ECA1657 NC_004547.2 1905551 1907395 R no significant database matches; hypothetical protein complement(1905551..1907395) Pectobacterium atrosepticum SCRI1043 2883191 YP_049757.1 CDS ECA1658 NC_004547.2 1908104 1909087 D no significant database matches; hypothetical protein 1908104..1909087 Pectobacterium atrosepticum SCRI1043 2883192 YP_049758.1 CDS ECA1659 NC_004547.2 1909271 1910731 R Similar to Lactococcus lactis nicking enzyme SWALL:O87207 (EMBL:AE001272) (680 aa) fasta scores: E(): 2.9e-20, 33.77% id in 302 aa, and to Escherichia coli O6 hypothetical protein c2397 SWALL:AAN80856 (EMBL:AE016762) (500 aa) fasta scores: E(): 2.9e-119, 64.98% id in 477 aa, and to Thiobacillus ferrooxidans mobilization protein MobL mobL SWALL:MOBL_THIFE (SWALL:P20085) (378 aa) fasta scores: E(): 3.7e-09, 28.23% id in 294 aa; plasmid-like protein complement(1909271..1910731) Pectobacterium atrosepticum SCRI1043 2883193 YP_049759.1 CDS ECA1660 NC_004547.2 1911408 1912160 D no significant database matches; hypothetical protein 1911408..1912160 Pectobacterium atrosepticum SCRI1043 2883117 YP_049760.1 CDS ECA1661 NC_004547.2 1912380 1913045 D no significant database matches; hypothetical protein 1912380..1913045 Pectobacterium atrosepticum SCRI1043 2883118 YP_049761.1 CDS ECA1662 NC_004547.2 1913612 1913905 D no significant database matches; hypothetical protein 1913612..1913905 Pectobacterium atrosepticum SCRI1043 2883119 YP_049762.1 CDS ECA1663 NC_004547.2 1913934 1914218 D Similar to Escherichia coli O6 hypothetical protein c2396 SWALL:AAN80855 (EMBL:AE016762) (104 aa) fasta scores: E(): 6.6e-10, 47.87% id in 94 aa; hypothetical protein 1913934..1914218 Pectobacterium atrosepticum SCRI1043 2883092 YP_049763.1 CDS ECA1664 NC_004547.2 1914324 1914683 R no significant database matches; lipoprotein complement(1914324..1914683) Pectobacterium atrosepticum SCRI1043 2883093 YP_049764.1 CDS hns1 NC_004547.2 1914763 1915161 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 DNA-binding protein H-NS SWALL:HNS_ECOLI (SWALL:P08936) (136 aa) fasta scores: E(): 3.4e-22, 61.19% id in 134 aa, and to Erwinia chrysanthemi Hns regulatory protein hnS SWALL:O53007 (EMBL:X89444) (135 aa) fasta scores: E(): 1.5e-22, 61.65% id in 133 aa. Also similar to ECA2893 (87.970% id in 133 aa overlap) and to ECA2328 (61.654% id in 133 aa overlap); DNA-binding protein Hns complement(1914763..1915161) Pectobacterium atrosepticum SCRI1043 2881905 YP_049765.1 CDS ECA1666 NC_004547.2 1915262 1915492 D no significant database matches; hypothetical protein 1915262..1915492 Pectobacterium atrosepticum SCRI1043 2883094 YP_049766.1 CDS ECA1667 NC_004547.2 1915724 1916281 D Similar to Escherichia coli O6 type IV pilin protein precursor c2395 SWALL:Q8CVY4 (EMBL:AE016762) (185 aa) fasta scores: E(): 5e-33, 52.68% id in 186 aa; type IV pilin protein 1915724..1916281 Pectobacterium atrosepticum SCRI1043 2883082 YP_049767.1 CDS ECA1668 NC_004547.2 1916388 1917980 D Similar to Escherichia coli O6 PilV-like protein c2394 SWALL:AAN80853 (EMBL:AE016762) (487 aa) fasta scores: E(): 4.2e-75, 52.14% id in 443 aa, and to Salmonella typhimurium type IV prepilin pilV SWALL:BAB91683 (EMBL:AP005147) (474 aa) fasta scores: E(): 2e-06, 26.94% id in 464 aa; type IV prepilin 1916388..1917980 Pectobacterium atrosepticum SCRI1043 2883083 YP_049768.1 CDS ECA1669 NC_004547.2 1918143 1919885 D Similar to Yersinia pestis hypothetical protein ypo0873 or y3255 SWALL:Q8ZHL8 (EMBL:AJ414145) (512 aa) fasta scores: E(): 4.6e-50, 42.01% id in 545 aa; hypothetical protein 1918143..1919885 Pectobacterium atrosepticum SCRI1043 2883084 YP_049769.1 CDS ECA1669A NC_004547.2 1919882 1920076 D Similar to Neisseria meningitidis hypothetical protein Nma0318 SWALL:Q9JWL2 (EMBL:AL162752) (68 aa) fasta scores: E(): 0.00015, 42.59% id in 54 aa, and to Clostridium perfringens hypothetical protein Cpe0646 SWALL:Q8XMP2 (EMBL:AP003187) (51 aa) fasta scores: E(): 4.2, 28.84% id in 52 aa; hypothetical protein 1919882..1920076 Pectobacterium atrosepticum SCRI1043 2883061 YP_049770.1 CDS ECA1670 NC_004547.2 1920492 1920980 R Similar to the C-terminal region of Bifidobacterium longum probable sugar permease of abc transporter system Bl1332 SWALL:AAN25132 (EMBL:UNKNOWN ACCESSION) (285 aa) fasta scores: E(): 2, 25.88% id in 170 aa; hypothetical protein complement(1920492..1920980) Pectobacterium atrosepticum SCRI1043 2883062 YP_049771.1 CDS ECA1671 NC_004547.2 1921648 1921920 R Similar to Yersinia pestis hypothetical y3270 SWALL:AAM86820 (EMBL:AE013928) (93 aa) fasta scores: E(): 1.2e-10, 46.57% id in 73 aa; hypothetical protein complement(1921648..1921920) Pectobacterium atrosepticum SCRI1043 2883063 YP_049772.1 CDS ECA1672 NC_004547.2 1922529 1922717 R no significant database matches; hypothetical protein complement(1922529..1922717) Pectobacterium atrosepticum SCRI1043 2883064 YP_049773.1 CDS ECA1672A NC_004547.2 1922743 1922949 R no significant database matches; hypothetical protein complement(1922743..1922949) Pectobacterium atrosepticum SCRI1043 2884153 YP_049774.1 CDS ECA1673 NC_004547.2 1923048 >1923206 R Partial CDS. Similar to the C-terminal regions of many phage integrases including Escherichia coli prophage P4 integrase IntB or b4271 SWALL:INTB_ECOLI (SWALL:P39347) (396 aa) fasta scores: E(): 3.6e-13, 70.21% id in 47 aa; integrase (partial) complement(1923048..>1923206) Pectobacterium atrosepticum SCRI1043 2884154 YP_049775.1 CDS ECA1674 NC_004547.2 1923212 1923496 R Similar to Pyrococcus furiosus hypothetical protein Pf0664 SWALL:Q8U312 (EMBL:AE010187) (102 aa) fasta scores: E(): 2.1e-05, 31.81% id in 88 aa; hypothetical protein complement(1923212..1923496) Pectobacterium atrosepticum SCRI1043 2884155 YP_049776.1 CDS ECA1675 NC_004547.2 1923640 >1923981 R Partial CDS. Similar to the C-terminal regions of several phage integrases including Escherichia coli O6 P4-family integrase c2392 SWALL:AAN80851 (EMBL:AE016762) (406 aa) fasta scores: E(): 7.5e-08, 52.85% id in 70 aa, and to Xanthomonas axonopodis phage-related integrase IntA or xac1664 SWALL:Q8PLX5 (EMBL:AE011798) (396 aa) fasta scores: E(): 0.0014, 59.09% id in 44 aa; integrase (partial) complement(1923640..>1923981) Pectobacterium atrosepticum SCRI1043 2885662 YP_049777.1 CDS chpA NC_004547.2 1923957 1924289 R MazF; endoribonuclease; toxin of the ChpA-ChpR toxin-antitoxin system; toxin ChpA complement(1923957..1924289) Pectobacterium atrosepticum SCRI1043 2884681 YP_049778.1 CDS chpR NC_004547.2 1924289 1924540 R Similar to Escherichia coli, and Escherichia coli O157:H7 PemI-like protein 1 ChpR or MazE or ChpaI or b2783 or z4098 or ecs3643 SWALL:CHPR_ECOLI (SWALL:P18534) (82 aa) fasta scores: E(): 4.6e-09, 38.55% id in 83 aa, and to Bacillus halodurans suppressor of ppgpp-regulated growth inhibitor bh3720 SWALL:Q9K6K9 (EMBL:AP001519) (81 aa) fasta scores: E(): 6.1e-05, 38.75% id in 80 aa; suppressor of growth inhibitory protein ChpA complement(1924289..1924540) Pectobacterium atrosepticum SCRI1043 2884682 YP_049779.1 CDS ECA1678 NC_004547.2 1925154 1925486 R no significant database matches; hypothetical protein complement(1925154..1925486) Pectobacterium atrosepticum SCRI1043 2885663 YP_049780.1 CDS intB NC_004547.2 1925682 1926959 R Similar to Yersinia pestis integrase IntB or ypo3438 SWALL:Q8ZBH6 (EMBL:AJ414157) (419 aa) fasta scores: E(): 2.4e-97, 58.15% id in 423 aa, and to Shigella flexneri integrase IntB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 2.4e-90, 58.45% id in 402 aa; phage integrase complement(1925682..1926959) Pectobacterium atrosepticum SCRI1043 2881280 YP_049781.1 CDS ECA1680 NC_004547.2 1927325 1928122 R Similar to Yersinia pestis hypothetical protein ypo1732 or y2576 SWALL:Q8ZFH7 (EMBL:AJ414150) (270 aa) fasta scores: E(): 5.5e-74, 65.64% id in 262 aa, and to Escherichia coli hypothetical protein yeei or b1976 SWALL:YEEI_ECOLI (SWALL:P76346) (265 aa) fasta scores: E(): 1.8e-67, 61.88% id in 265 aa; hypothetical protein complement(1927325..1928122) Pectobacterium atrosepticum SCRI1043 2885664 YP_049782.1 CDS ECA1681 NC_004547.2 1928679 1930007 R Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yddv or b1490 or z2219 or ecs2095 SWALL:YDDV_ECOLI (SWALL:P77793) (460 aa) fasta scores: E(): 3.2e-64, 42.62% id in 427 aa, and to Shigella flexneri orf, conserved hypothetical protein yddv or sf1736.1 SWALL:AAN43312 (EMBL:AE015194) (381 aa) fasta scores: E(): 7.6e-44, 40.85% id in 328 aa; hypothetical protein complement(1928679..1930007) Pectobacterium atrosepticum SCRI1043 2885657 YP_049783.1 CDS dsrB NC_004547.2 1930301 1930504 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 DsrB protein dsrb or b1952 or c2370 or z3042 or ecs2691 SWALL:DSRB_ECOLI (SWALL:P40678) (62 aa) fasta scores: E(): 3.3e-15, 72.88% id in 59 aa; hypothetical protein 1930301..1930504 Pectobacterium atrosepticum SCRI1043 2885429 YP_049784.1 CDS trg NC_004547.2 1930573 1932294 R Similar to Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 5.4e-99, 59.96% id in 537 aa; methyl-accepting chemotaxis protein complement(1930573..1932294) Pectobacterium atrosepticum SCRI1043 2884252 YP_049785.1 CDS ECA1684 NC_004547.2 1932575 1933540 D Similar to Salmonella typhimurium permease yifz or stm4395 SWALL:Q8ZK79 (EMBL:AE008906) (308 aa) fasta scores: E(): 5.9e-80, 69.79% id in 298 aa, and to Salmonella typhi membrane protein sty4751 SWALL:Q8Z162 (EMBL:AL627283) (308 aa) fasta scores: E(): 1.1e-79, 69.46% id in 298 aa; hypothetical protein 1932575..1933540 Pectobacterium atrosepticum SCRI1043 2885658 YP_049786.1 CDS flhD NC_004547.2 1934361 1934720 D with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 1934361..1934720 Pectobacterium atrosepticum SCRI1043 2881944 YP_049787.1 CDS flhC NC_004547.2 1934724 1935302 D With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 1934724..1935302 Pectobacterium atrosepticum SCRI1043 2881913 YP_049788.1 CDS motA NC_004547.2 1935437 1936324 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1935437..1936324 Pectobacterium atrosepticum SCRI1043 2881753 YP_049789.1 CDS motB NC_004547.2 1936321 1937376 D Similar to Escherichia coli, and Escherichia coli O157:H7 chemotaxis MotB protein MotB or b1889 or z2943 or ecs2599 SWALL:MOTB_ECOLI (SWALL:P09349) (308 aa) fasta scores: E(): 1.1e-64, 64.51% id in 310 aa; flagellar motor protein 1936321..1937376 Pectobacterium atrosepticum SCRI1043 2881754 YP_049790.1 CDS cheA NC_004547.2 1937404 1939404 D chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA 1937404..1939404 Pectobacterium atrosepticum SCRI1043 2884598 YP_049791.1 CDS cheW NC_004547.2 1939436 1939933 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri chemotaxis protein CheW or b1887 or c2302 or z2941 or ecs2597 or sf1936 SWALL:CHEW_ECOLI (SWALL:P07365) (167 aa) fasta scores: E(): 3.6e-50, 86.33% id in 161 aa; purine-binding chemotaxis protein 1939436..1939933 Pectobacterium atrosepticum SCRI1043 2884549 YP_049792.1 CDS cheD NC_004547.2 1940069 1941754 D Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 1.3e-112, 63.81% id in 561 aa; methyl-accepting chemotaxis protein 1940069..1941754 Pectobacterium atrosepticum SCRI1043 2884600 YP_049793.1 CDS cheR NC_004547.2 1942291 1943163 D methylates the MCP; chemotaxis methyltransferase CheR 1942291..1943163 Pectobacterium atrosepticum SCRI1043 2884601 YP_049794.1 CDS cheB NC_004547.2 1943163 1944215 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1943163..1944215 Pectobacterium atrosepticum SCRI1043 2884599 YP_049795.1 CDS cheY NC_004547.2 1944254 1944643 D chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY 1944254..1944643 Pectobacterium atrosepticum SCRI1043 2884550 YP_049796.1 CDS cheZ NC_004547.2 1944653 1945297 D cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 1944653..1945297 Pectobacterium atrosepticum SCRI1043 2884551 YP_049797.1 CDS flhB NC_004547.2 1945543 1946694 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1945543..1946694 Pectobacterium atrosepticum SCRI1043 2881912 YP_049798.1 CDS flhA NC_004547.2 1946687 1948771 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1946687..1948771 Pectobacterium atrosepticum SCRI1043 2881911 YP_049799.1 CDS flhE NC_004547.2 1948768 1949187 D Similar to Escherichia coli flagellar protein FlhE precursor FlhE or b1878 SWALL:FLHE_ECOLI (SWALL:P76297) (130 aa) fasta scores: E(): 1.2e-12, 38.68% id in 137 aa; flagellar protein 1948768..1949187 Pectobacterium atrosepticum SCRI1043 2881945 YP_049800.1 CDS flgN NC_004547.2 1949261 1949698 R Similar to Salmonella typhimurium, and Salmonella typhi flagella synthesis protein FlgN or stm1171 or sty1210 SWALL:FLGN_SALTY (SWALL:P37406) (140 aa) fasta scores: E(): 2.4e-14, 38.88% id in 144 aa, and to Yersinia enterocolitica flagella synthesis protein FlgN SWALL:FLGN_YEREN (SWALL:Q56854) (147 aa) fasta scores: E(): 6.2e-22, 46.85% id in 143 aa; flagella synthesis protein complement(1949261..1949698) Pectobacterium atrosepticum SCRI1043 2881910 YP_049801.1 CDS flgM NC_004547.2 1949704 1950000 R regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM complement(1949704..1950000) Pectobacterium atrosepticum SCRI1043 2881909 YP_049802.1 CDS flgA NC_004547.2 1950142 1950810 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1950142..1950810) Pectobacterium atrosepticum SCRI1043 2881343 YP_049803.1 CDS flgB NC_004547.2 1950974 1951390 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 1950974..1951390 Pectobacterium atrosepticum SCRI1043 2881344 YP_049804.1 CDS flgC NC_004547.2 1951419 1951823 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1951419..1951823 Pectobacterium atrosepticum SCRI1043 2881345 YP_049805.1 CDS flgD NC_004547.2 1951839 1952513 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1951839..1952513 Pectobacterium atrosepticum SCRI1043 2885432 YP_049806.1 CDS flgE NC_004547.2 1952589 1953806 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1952589..1953806 Pectobacterium atrosepticum SCRI1043 2885433 YP_049807.1 CDS flgF NC_004547.2 1953828 1954583 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1953828..1954583 Pectobacterium atrosepticum SCRI1043 2885434 YP_049808.1 CDS flgG NC_004547.2 1954611 1955393 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1954611..1955393 Pectobacterium atrosepticum SCRI1043 2881850 YP_049809.1 CDS flgH NC_004547.2 1955568 1956287 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1955568..1956287 Pectobacterium atrosepticum SCRI1043 2881851 YP_049810.1 CDS flgI NC_004547.2 1956304 1957413 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1956304..1957413 Pectobacterium atrosepticum SCRI1043 2881352 YP_049811.1 CDS flgJ NC_004547.2 1957413 1958375 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1957413..1958375 Pectobacterium atrosepticum SCRI1043 2881353 YP_049812.1 CDS flgK NC_004547.2 1958502 1960208 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1958502..1960208 Pectobacterium atrosepticum SCRI1043 2881354 YP_049813.1 CDS flgL NC_004547.2 1960240 1961193 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 1960240..1961193 Pectobacterium atrosepticum SCRI1043 2881908 YP_049814.1 CDS fliR NC_004547.2 1961529 1962314 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(1961529..1962314) Pectobacterium atrosepticum SCRI1043 2881940 YP_049815.1 CDS fliQ NC_004547.2 1962317 1962586 R with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ complement(1962317..1962586) Pectobacterium atrosepticum SCRI1043 2881939 YP_049816.1 CDS fliP NC_004547.2 1962607 1963383 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(1962607..1963383) Pectobacterium atrosepticum SCRI1043 2881938 YP_049817.1 CDS fliO NC_004547.2 1963380 1963802 R Previously sequenced as Erwinia carotovora MopB protein mopB SWALL:MOPB_ERWCA (SWALL:P34199) (140 aa) fasta scores: E(): 2.5e-48, 95% id in 140 aa, and to Salmonella typhimurium, and Salmonella typhi flagellar protein flio flio or flbd or flap or stm1978 or sty2186 SWALL:FLIO_SALTY (SWALL:P54699) (125 aa) fasta scores: E(): 2.9e-14, 45% id in 120 aa; flagellar protein complement(1963380..1963802) Pectobacterium atrosepticum SCRI1043 2881234 YP_049818.1 CDS fliN NC_004547.2 1963802 1964215 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN complement(1963802..1964215) Pectobacterium atrosepticum SCRI1043 2881233 YP_049819.1 CDS fliM NC_004547.2 1964208 1965221 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(1964208..1965221) Pectobacterium atrosepticum SCRI1043 2882159 YP_049820.1 CDS fliL NC_004547.2 1965227 1965712 R interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(1965227..1965712) Pectobacterium atrosepticum SCRI1043 2882158 YP_049821.1 CDS fliK NC_004547.2 1965862 1967160 R Similar to Salmonella typhimurium flagellar hook-length control protein FliK or FlaE or FlaR or stm1974 SWALL:FLIK_SALTY (SWALL:P26416) (405 aa) fasta scores: E(): 1.9e-22, 35.3% id in 405 aa; flagellar hook-length control protein complement(1965862..1967160) Pectobacterium atrosepticum SCRI1043 2882157 YP_049822.1 CDS fliJ NC_004547.2 1967157 1967603 R rod/hook and filament chaperone; flagellar biosynthesis chaperone complement(1967157..1967603) Pectobacterium atrosepticum SCRI1043 2882111 YP_049823.1 CDS fliI NC_004547.2 1967612 1968985 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(1967612..1968985) Pectobacterium atrosepticum SCRI1043 2882110 YP_049824.1 CDS fliH NC_004547.2 1968982 1969704 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(1968982..1969704) Pectobacterium atrosepticum SCRI1043 2882080 YP_049825.1 CDS fliG NC_004547.2 1969697 1970689 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(1969697..1970689) Pectobacterium atrosepticum SCRI1043 2882079 YP_049826.1 CDS fliF NC_004547.2 1970686 1972410 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(1970686..1972410) Pectobacterium atrosepticum SCRI1043 2882078 YP_049827.1 CDS fliE NC_004547.2 1972671 1972985 D forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1972671..1972985 Pectobacterium atrosepticum SCRI1043 2882064 YP_049828.1 CDS fliT NC_004547.2 1973235 1973615 R binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT complement(1973235..1973615) Pectobacterium atrosepticum SCRI1043 2882050 YP_049829.1 CDS fliS NC_004547.2 1973615 1974025 R flagellin specific chaperone; flagellar protein FliS complement(1973615..1974025) Pectobacterium atrosepticum SCRI1043 2882049 YP_049830.1 CDS fliD NC_004547.2 1974065 1975483 R involved in flagellin assembly; flagellar capping protein complement(1974065..1975483) Pectobacterium atrosepticum SCRI1043 2882063 YP_049831.1 CDS fliC NC_004547.2 1975728 1976600 D Similar to Erwinia chrysanthemi flagellin FliC SWALL:Q8RST5 (EMBL:AJ430202) (280 aa) fasta scores: E(): 3.2e-36, 65.29% id in 291 aa, and to Pseudomonas fluorescens flagellin FliC SWALL:Q8VS56 (EMBL:AF399739) (283 aa) fasta scores: E(): 3.4e-39, 50.85% id in 291 aa; flagellin 1975728..1976600 Pectobacterium atrosepticum SCRI1043 2882062 YP_049832.1 CDS ECA1732 NC_004547.2 1976824 1980243 D no significant database matches; hypothetical protein 1976824..1980243 Pectobacterium atrosepticum SCRI1043 2885659 YP_049833.1 CDS vioA NC_004547.2 1980555 1981667 D Similar to Escherichia coli VioA SWALL:Q9XCW4 (EMBL:AF125322) (371 aa) fasta scores: E(): 1e-78, 59.94% id in 362 aa, and to Xanthomonas axonopodis nucleotide sugar transaminase VioA or xac1966 SWALL:Q8PL40 (EMBL:AE011831) (369 aa) fasta scores: E(): 9.2e-87, 61.43% id in 363 aa; nucleotide sugar transaminase 1980555..1981667 Pectobacterium atrosepticum SCRI1043 2882704 YP_049834.1 CDS ECA1734 NC_004547.2 1981773 1982474 D Similar to Shewanella oneidensis conserved hypothetical protein so3184 SWALL:AAN56184 (EMBL:AE015756) (240 aa) fasta scores: E(): 5e-24, 34.34% id in 230 aa, and to Bordetella bronchiseptica hypothetical 27.4 kDa protein bblps1.06 SWALL:O87979 (EMBL:AJ007747) (239 aa) fasta scores: E(): 6.7e-15, 31.03% id in 232 aa; hypothetical protein 1981773..1982474 Pectobacterium atrosepticum SCRI1043 2885533 YP_049835.1 CDS ECA1735 NC_004547.2 1982477 1983436 D Similar to Xanthomonas axonopodis hypothetical protein Xac1689 SWALL:Q8PLV0 (EMBL:AE011801) (317 aa) fasta scores: E(): 2.3e-21, 29.74% id in 316 aa, and to Mycobacterium tuberculosis hypothetical protein rv1502 or mt1551 or mtcy277.24 SWALL:YF02_MYCTU (SWALL:P71783) (299 aa) fasta scores: E(): 1.6e-12, 34.82% id in 313 aa; hypothetical protein 1982477..1983436 Pectobacterium atrosepticum SCRI1043 2885534 YP_049836.1 CDS ECA1736 NC_004547.2 1983436 1984404 D Similar to Xanthomonas axonopodis hypothetical protein Xac1689 SWALL:Q8PLV0 (EMBL:AE011801) (317 aa) fasta scores: E(): 3.7e-11, 31.67% id in 322 aa, and to Mycobacterium tuberculosis hypothetical protein rv1502 or mt1551 or mtcy277.24 SWALL:YF02_MYCTU (SWALL:P71783) (299 aa) fasta scores: E(): 0.0028, 31.56% id in 320 aa; hypothetical protein 1983436..1984404 Pectobacterium atrosepticum SCRI1043 2885535 YP_049837.1 CDS ECA1737 NC_004547.2 1984404 1984844 D Similar to Lactococcus lactis acetyltransferase ycjc or ll0293 SWALL:Q9CIR3 (EMBL:AE006266) (189 aa) fasta scores: E(): 0.0034, 32.46% id in 77 aa, and to Haemophilus influenzae ribosomal-protein-alanine acetyltransferase rimi or hi0010 SWALL:RIMI_HAEIN (SWALL:P44305) (146 aa) fasta scores: E(): 0.053, 27.55% id in 127 aa; acetyltransferase 1984404..1984844 Pectobacterium atrosepticum SCRI1043 2882822 YP_049838.1 CDS ECA1738 NC_004547.2 1984841 1985590 D Similar to Synechocystis sp. hypothetical protein Slr1618 SWALL:P72896 (EMBL:D90901) (261 aa) fasta scores: E(): 5e-13, 26.69% id in 236 aa; hypothetical protein 1984841..1985590 Pectobacterium atrosepticum SCRI1043 2882823 YP_049839.1 CDS fliA NC_004547.2 1986118 1986840 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1986118..1986840 Pectobacterium atrosepticum SCRI1043 2881946 YP_049840.1 CDS fliZ NC_004547.2 1987044 1987559 D expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; flagella biosynthesis protein FliZ 1987044..1987559 Pectobacterium atrosepticum SCRI1043 2882051 YP_049841.1 CDS phoH NC_004547.2 1988090 1988878 D Similar to Escherichia coli, and Escherichia coli O157:H7 phoh protein PhoH or PsiH or b1020 or z1522 or ecs1266 SWALL:PHOH_ECOLI (SWALL:P31544) (354 aa) fasta scores: E(): 1.1e-85, 86.97% id in 261 aa; hypothetical protein 1988090..1988878 Pectobacterium atrosepticum SCRI1043 2883716 YP_049842.1 CDS ECA1742 NC_004547.2 1989440 1990078 R Similar to Streptococcus agalactiae hypothetical protein gbs1892 SWALL:CAD47551 (EMBL:AL766854) (212 aa) fasta scores: E(): 1.6e-50, 62.08% id in 211 aa, and to Clostridium acetobutylicum predicted sugar-phosphate isomerase cac2606 SWALL:Q97FX0 (EMBL:AE007758) (213 aa) fasta scores: E(): 4.8e-56, 68.24% id in 211 aa; hypothetical protein complement(1989440..1990078) Pectobacterium atrosepticum SCRI1043 2882824 YP_049843.1 CDS betT NC_004547.2 1990295 1992328 R proton-motive-force-driven choline transporter; choline transport protein BetT complement(1990295..1992328) Pectobacterium atrosepticum SCRI1043 2881644 YP_049844.1 CDS betI NC_004547.2 1992686 1993273 D HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 1992686..1993273 Pectobacterium atrosepticum SCRI1043 2881643 YP_049845.1 CDS betB NC_004547.2 1993342 1994814 D catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 1993342..1994814 Pectobacterium atrosepticum SCRI1043 2882566 YP_049846.1 CDS betA NC_004547.2 1994834 1996513 D catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 1994834..1996513 Pectobacterium atrosepticum SCRI1043 2882565 YP_049847.1 CDS ECA1747 NC_004547.2 1996673 1997326 D Similar to Escherichia coli O157:H7 orf, hypothetical protein yebe or z2897 or ecs2556 SWALL:Q8XCK2 (EMBL:AE005407) (219 aa) fasta scores: E(): 5e-42, 57% id in 214 aa, and to Shigella flexneri orf, conserved hypothetical protein yebe or sf1857 SWALL:AAN43415 (EMBL:AE015204) (219 aa) fasta scores: E(): 3.1e-41, 56.07% id in 214 aa; hypothetical protein 1996673..1997326 Pectobacterium atrosepticum SCRI1043 2882825 YP_049848.1 CDS fabA NC_004547.2 1997423 1997941 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(1997423..1997941) Pectobacterium atrosepticum SCRI1043 2884026 YP_049849.1 CDS ECA1749 NC_004547.2 1998033 1999760 R Similar to Escherichia coli protease La homolog ycbz or b0955 SWALL:LONH_ECOLI (SWALL:P75867) (586 aa) fasta scores: E(): 3e-130, 54.75% id in 579 aa, and to Yersinia pestis lon protease ypo1431 or y2739 SWALL:Q8ZG79 (EMBL:AJ414148) (590 aa) fasta scores: E(): 4.3e-167, 67.47% id in 575 aa; hypothetical protein complement(1998033..1999760) Pectobacterium atrosepticum SCRI1043 2882760 YP_049850.1 CDS ECA1750 NC_004547.2 1999980 2000438 D Similar to Salmonella typhimurium cytoplasmic protein ycbg or stm1069 SWALL:Q8ZQ68 (EMBL:AE008746) (150 aa) fasta scores: E(): 2.9e-43, 79.19% id in 149 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ycbg or b0956 or z1306 or ecs1040 SWALL:YCBG_ECOLI (SWALL:P45569) (150 aa) fasta scores: E(): 2.6e-42, 78% id in 150 aa; hypothetical protein 1999980..2000438 Pectobacterium atrosepticum SCRI1043 2882761 YP_049851.1 CDS ompA NC_004547.2 2000516 2001616 R OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A complement(2000516..2001616) Pectobacterium atrosepticum SCRI1043 2883407 YP_049852.1 CDS sulA NC_004547.2 2001980 2002486 R Similar to Escherichia coli, and Escherichia coli O157:H7 cell division inhibitor SulA or SfiA or b0958 or z1308 or ecs1042 SWALL:SULA_ECOLI (SWALL:P08846) (169 aa) fasta scores: E(): 2.3e-31, 57.83% id in 166 aa; SOS cell division inhibitor complement(2001980..2002486) Pectobacterium atrosepticum SCRI1043 2884331 YP_049853.1 CDS ECA1753 NC_004547.2 2002710 2003330 D Similar to Yersinia pestis hypothetical protein Ypo1437 SWALL:Q8ZG75 (EMBL:AJ414148) (211 aa) fasta scores: E(): 7.1e-38, 53.36% id in 208 aa, and to Escherichia coli hypothetical protein yccr or b0959 SWALL:YCCR_ECOLI (SWALL:P75869) (209 aa) fasta scores: E(): 9.7e-27, 42.78% id in 194 aa; hypothetical protein 2002710..2003330 Pectobacterium atrosepticum SCRI1043 2882762 YP_049854.1 CDS ECA1754 NC_004547.2 2003347 2005482 R Similar to Yersinia pestis membrane protein ypo1438 or y2732 SWALL:AAM86284 (EMBL:AJ414148) (712 aa) fasta scores: E(): 0, 75.03% id in 709 aa, and to Shigella flexneri orf, conserved hypothetical protein yccs or sf0962 SWALL:AAN42590 (EMBL:AE015125) (721 aa) fasta scores: E(): 5.4e-206, 71% id in 707 aa; hypothetical protein complement(2003347..2005482) Pectobacterium atrosepticum SCRI1043 2882783 YP_049855.1 CDS ECA1755 NC_004547.2 2005503 2005949 R Similar to Salmonella typhimurium, and Salmonella typhi inner membrane protein yccf or stm1074 or sty1096 SWALL:Q8XGG4 (EMBL:AE008746) (148 aa) fasta scores: E(): 8.5e-52, 82.99% id in 147 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yccf or b0961 or sf0963 SWALL:YCCF_ECOLI (SWALL:P37065) (148 aa) fasta scores: E(): 1.4e-51, 83.67% id in 147 aa; hypothetical protein complement(2005503..2005949) Pectobacterium atrosepticum SCRI1043 2882784 YP_049856.1 CDS helD NC_004547.2 2006148 2008205 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 2006148..2008205 Pectobacterium atrosepticum SCRI1043 2883060 YP_049857.1 CDS mgsA NC_004547.2 2008288 2008746 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(2008288..2008746) Pectobacterium atrosepticum SCRI1043 2883339 YP_049858.1 CDS ECA1758 NC_004547.2 2008884 2009408 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ycct precursor ycct or b0964 or c1101 or z1315 or ecs1048 or sf0966 SWALL:YCCT_ECOLI (SWALL:P75873) (220 aa) fasta scores: E(): 1.1e-16, 35.63% id in 174 aa, and to Yersinia pestis exported protein ypo1442 or y2728 SWALL:AAM86280 (EMBL:AJ414148) (226 aa) fasta scores: E(): 2.6e-16, 42.85% id in 168 aa; hypothetical protein complement(2008884..2009408) Pectobacterium atrosepticum SCRI1043 2882785 YP_049859.1 CDS ECA1759 NC_004547.2 2009604 2010017 D Similar to Yersinia pestis hypothetical protein ypo1443 or y2727 SWALL:AAM86279 (EMBL:AJ414148) (138 aa) fasta scores: E(): 1.5e-35, 75.18% id in 137 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein stm1078 or sty1101 SWALL:Q8XGM9 (EMBL:AE008747) (138 aa) fasta scores: E(): 1.8e-34, 72.99% id in 137 aa; CoA binding protein 2009604..2010017 Pectobacterium atrosepticum SCRI1043 2882392 YP_049860.1 CDS ECA1760 NC_004547.2 2010099 2010407 R Similar to Salmonella typhimurium, and Salmonella typhi inner membrane protein yccv or stm1079 or sty1102 SWALL:Q8XFC1 (EMBL:AE008747) (105 aa) fasta scores: E(): 1.5e-22, 59.04% id in 105 aa, and to Yersinia pestis hypothetical protein ypo1444 or y2726 SWALL:AAM86278 (EMBL:AJ414148) (113 aa) fasta scores: E(): 1e-21, 60% id in 105 aa; heat shock protein HspQ complement(2010099..2010407) Pectobacterium atrosepticum SCRI1043 2882393 YP_049861.1 CDS ECA1761 NC_004547.2 2010635 2010913 D Similar to Escherichia coli, and Escherichia coli O157:H7 acylphosphatase yccx or b0968 or z1320 or ecs1052 SWALL:ACYP_ECOLI (SWALL:P75877) (92 aa) fasta scores: E(): 4.4e-18, 61.95% id in 92 aa; acylphosphatase 2010635..2010913 Pectobacterium atrosepticum SCRI1043 2882394 YP_049862.1 CDS ECA1762 NC_004547.2 2010925 2011254 R Similar to Yersinia pestis sulfite reductase y2723 SWALL:AAM86275 (EMBL:AE013875) (109 aa) fasta scores: E(): 1.1e-38, 92.66% id in 109 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein ycck ycck or b0969 or sf0971 SWALL:YCCK_ECOLI (SWALL:P45572) (109 aa) fasta scores: E(): 1.6e-32, 78.89% id in 109 aa; hypothetical protein complement(2010925..2011254) Pectobacterium atrosepticum SCRI1043 2882225 YP_049863.1 CDS ECA1763 NC_004547.2 2011395 2012054 R Similar to Salmonella typhi membrane protein sty1112 SWALL:Q8Z7R5 (EMBL:AL627269) (219 aa) fasta scores: E(): 2.3e-60, 77.16% id in 219 aa, and to Escherichia coli O157:H7 carrier/transport protein ycca or z1322 or ecs1054 SWALL:Q8XD81 (EMBL:AE005287) (219 aa) fasta scores: E(): 4e-60, 76.25% id in 219 aa; hypothetical protein complement(2011395..2012054) Pectobacterium atrosepticum SCRI1043 2882226 YP_049864.1 CDS ECA1764 NC_004547.2 2012812 2013066 R Similar to Salmonella typhi hypothetical protein Sty1854 SWALL:Q8Z6D3 (EMBL:AL627271) (82 aa) fasta scores: E(): 0.0033, 40% id in 60 aa, and to Salmonella typhimurium cytoplasmic protein stm1267 SWALL:Q8ZPX7 (EMBL:AE008755) (82 aa) fasta scores: E(): 0.0024, 40% id in 60 aa; hypothetical protein complement(2012812..2013066) Pectobacterium atrosepticum SCRI1043 2882227 YP_049865.1 CDS ECA1765 NC_004547.2 2013100 2013261 R no significant database matches; hypothetical protein complement(2013100..2013261) Pectobacterium atrosepticum SCRI1043 2882661 YP_049866.1 CDS ECA1766 NC_004547.2 2013548 2013970 D Similar to Anabaena sp. hypothetical protein Alr2015 SWALL:Q8YVG3 (EMBL:AP003587) (143 aa) fasta scores: E(): 3.7e-15, 38.93% id in 131 aa, and to Bradyrhizobium japonicum Blr7631 protein blr7631 SWALL:BAC52896 (EMBL:AP005962) (172 aa) fasta scores: E(): 3.2e-13, 43.26% id in 141 aa; hypothetical protein 2013548..2013970 Pectobacterium atrosepticum SCRI1043 2882662 YP_049867.1 CDS ECA1767 NC_004547.2 2013994 2014578 D Similar to Lactococcus lactis hypothetical protein yvea or ll2054 SWALL:Q9CDZ6 (EMBL:AE006436) (176 aa) fasta scores: E(): 5.4e-12, 33.53% id in 167 aa, and to Clostridium acetobutylicum amidase from nicotinamidase family cac3465 SWALL:Q97DL0 (EMBL:AE007844) (178 aa) fasta scores: E(): 1.5e-09, 30.23% id in 172 aa; isochorismatase family protein 2013994..2014578 Pectobacterium atrosepticum SCRI1043 2882663 YP_049868.1 CDS ECA1768 NC_004547.2 2014583 2015038 D Similar to Bacteroides thetaiotaomicron acetyltransferase, bt1464 SWALL:AAO76571 (EMBL:AE016931) (152 aa) fasta scores: E(): 3.3e-31, 50.68% id in 146 aa, and to Lactococcus lactis unknown protein yuid or ll2008 SWALL:Q9CE40 (EMBL:AE006430) (152 aa) fasta scores: E(): 6.2e-31, 50.34% id in 147 aa; acetyltransferase 2014583..2015038 Pectobacterium atrosepticum SCRI1043 2882664 YP_049869.1 CDS ECA1769 NC_004547.2 2015203 2015631 D Similar to Escherichia coli unknown protein from 2d-page ybdq or b0607 SWALL:UP12_ECOLI (SWALL:P39177) (142 aa) fasta scores: E(): 4e-19, 46.52% id in 144 aa, and to Shigella flexneri orf, conserved hypothetical protein ybdq or sf0526 SWALL:AAN42172 (EMBL:AE015084) (142 aa) fasta scores: E(): 4.6e-19, 46.52% id in 144 aa; hypothetical protein 2015203..2015631 Pectobacterium atrosepticum SCRI1043 2885453 YP_049870.1 CDS ECA1770 NC_004547.2 2015680 2016186 R Similar to Rhizobium meliloti hypothetical protein r00856 or smc00850 SWALL:Q92RL1 (EMBL:AL591785) (172 aa) fasta scores: E(): 9.4e-29, 51.28% id in 156 aa, and to Pseudomonas putida conserved hypothetical protein pp5158 SWALL:AAN70723 (EMBL:AE016793) (167 aa) fasta scores: E(): 5.6e-23, 43.7% id in 151 aa; hypothetical protein complement(2015680..2016186) Pectobacterium atrosepticum SCRI1043 2885454 YP_049871.1 CDS ECA1771 NC_004547.2 2016270 2016455 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yjdo or b4128.1 or c5136 or z5731 or ecs5110.1 SWALL:YJDO_ECOLI (SWALL:P58038) (57 aa) fasta scores: E(): 1.8e-05, 42.3% id in 52 aa, and to Shigella flexneri orf, conserved hypothetical protein ydcx or sf1772 SWALL:AAN43343 (EMBL:AE015197) (82 aa) fasta scores: E(): 3e-06, 40% id in 60 aa; hypothetical protein complement(2016270..2016455) Pectobacterium atrosepticum SCRI1043 2885455 YP_049872.1 CDS ECA1772 NC_004547.2 2016611 2016910 D Similar to Escherichia coli O157:H7 hypothetical protein z2994 or ecs2649 SWALL:Q8XBD8 (EMBL:AE005414) (130 aa) fasta scores: E(): 2.9e-14, 53.19% id in 94 aa; hypothetical protein 2016611..2016910 Pectobacterium atrosepticum SCRI1043 2881457 YP_049873.1 CDS ECA1773 NC_004547.2 2017069 2017350 D Similar to Yersinia pestis hypothetical protein ypo2226 or y2068 SWALL:AAM85632 (EMBL:AJ414151) (100 aa) fasta scores: E(): 1.5e-11, 54% id in 100 aa; hypothetical protein 2017069..2017350 Pectobacterium atrosepticum SCRI1043 2881458 YP_049874.1 CDS ECA1774 NC_004547.2 2018184 2019848 D Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 9.1e-53, 40.82% id in 556 aa; methyl-accepting chemotaxis protein 2018184..2019848 Pectobacterium atrosepticum SCRI1043 2881459 YP_049875.1 CDS ECA1775 NC_004547.2 2019963 2021483 R Similar to Corynebacterium glutamicum uncharacterized iron-regulated membrane protein cgl2326 SWALL:Q8NN80 (EMBL:AP005281) (475 aa) fasta scores: E(): 3.2e-31, 36.8% id in 451 aa, and to Streptomyces coelicolor integral membrane protein sco0863 or scm2.16C SWALL:Q9RCU8 (EMBL:AL939107) (485 aa) fasta scores: E(): 1.6e-21, 39.44% id in 464 aa; iron-regulated membrane protein complement(2019963..2021483) Pectobacterium atrosepticum SCRI1043 2881872 YP_049876.1 CDS ECA1776 NC_004547.2 2021583 2022077 R no significant database matches; hypothetical protein complement(2021583..2022077) Pectobacterium atrosepticum SCRI1043 2881873 YP_049877.1 CDS mdoG NC_004547.2 2022455 2024023 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2022455..2024023 Pectobacterium atrosepticum SCRI1043 2883317 YP_049878.1 CDS opgH NC_004547.2 2024016 2026580 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 2024016..2026580 Pectobacterium atrosepticum SCRI1043 2883318 YP_049879.1 CDS htrB NC_004547.2 2026698 2027618 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(2026698..2027618) Pectobacterium atrosepticum SCRI1043 2883723 YP_049880.1 CDS ECA1780 NC_004547.2 2027880 2028974 R Similar to Xanthomonas axonopodis fmn oxidoreductase frp or xac0321 SWALL:Q8PQK2 (EMBL:AE011657) (365 aa) fasta scores: E(): 1.4e-86, 62.53% id in 363 aa, and to Ralstonia solanacearum NADH-dependent flavin oxidoreductase protein rsc0702 or rs01607 SWALL:Q8Y1I8 (EMBL:AL646060) (370 aa) fasta scores: E(): 1.8e-79, 56.63% id in 362 aa; NADH-dependent flavin oxidoreductase complement(2027880..2028974) Pectobacterium atrosepticum SCRI1043 2881874 YP_049881.1 CDS ECA1781 NC_004547.2 2029109 2030257 D Similar to Yersinia pestis hypothetical protein ypo2451/y1738 ypo2451 or y1738 SWALL:AAM85306 (EMBL:AJ414152) (373 aa) fasta scores: E(): 7.5e-115, 79.5% id in 366 aa, and to Salmonella typhimurium hypothetical protein ycea ycea or stm1156 SWALL:YCEA_SALTY (SWALL:Q8ZQ23) (350 aa) fasta scores: E(): 1e-101, 74.21% id in 349 aa; hypothetical protein 2029109..2030257 Pectobacterium atrosepticum SCRI1043 2882059 YP_049882.1 CDS ECA1782 NC_004547.2 2030332 2030910 R Similar to Salmonella typhimurium, and Salmonella typhi secreted protein ycei or stm1157 or sty1194 SWALL:Q8XGU0 (EMBL:AE008750) (191 aa) fasta scores: E(): 1.1e-61, 82.19% id in 191 aa, and to Shigella flexneri orf, conserved hypothetical protein ycei or sf1063 SWALL:AAN42685 (EMBL:AE015134) (191 aa) fasta scores: E(): 1.1e-60, 80.1% id in 191 aa; hypothetical protein complement(2030332..2030910) Pectobacterium atrosepticum SCRI1043 2882060 YP_049883.1 CDS ECA1783 NC_004547.2 2030937 2031491 R Similar to Yersinia pestis membrane protein ypo2316 SWALL:Q8ZE67 (EMBL:AJ414152) (184 aa) fasta scores: E(): 3.6e-53, 69.94% id in 183 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0422 SWALL:Q9I691 (EMBL:AE004479) (189 aa) fasta scores: E(): 8.1e-48, 62.63% id in 182 aa; hypothetical protein complement(2030937..2031491) Pectobacterium atrosepticum SCRI1043 2882061 YP_049884.1 CDS bssS NC_004547.2 2031947 2032201 R BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS complement(2031947..2032201) Pectobacterium atrosepticum SCRI1043 2881569 YP_049885.1 CDS ECA1785 NC_004547.2 2032438 2032695 R Similar to Escherichia coli O6 hypothetical protein c1435 SWALL:AAN79904 (EMBL:AE016759) (92 aa) fasta scores: E(): 0.5, 30.38% id in 79 aa; hypothetical protein complement(2032438..2032695) Pectobacterium atrosepticum SCRI1043 2881570 YP_049886.1 CDS dinI NC_004547.2 2032784 2033023 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri DNA-damage-inducible protein I DinI or b1061 or c1328 or z1698 or ecs1439 or sf1067 SWALL:DINI_ECOLI (SWALL:Q47143) (81 aa) fasta scores: E(): 6.5e-18, 64.19% id in 81 aa; DNA damage-inducible protein I complement(2032784..2033023) Pectobacterium atrosepticum SCRI1043 2883356 YP_049887.1 CDS pyrC NC_004547.2 2033130 2034173 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(2033130..2034173) Pectobacterium atrosepticum SCRI1043 2882669 YP_049888.1 CDS ECA1788 NC_004547.2 2034358 2034645 D Similar to Yersinia pestis hypothetical protein ypo1588 or y1744 SWALL:AAM85313 (EMBL:AJ414149) (95 aa) fasta scores: E(): 1.1e-15, 51.68% id in 89 aa, and to Neisseria meningitidis hypothetical protein Nma1764 SWALL:Q9JTI2 (EMBL:AL162757) (97 aa) fasta scores: E(): 1.4e-12, 43.33% id in 90 aa; hypothetical protein 2034358..2034645 Pectobacterium atrosepticum SCRI1043 2881571 YP_049889.1 CDS rne NC_004547.2 2034716 2038000 R bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E complement(2034716..2038000) Pectobacterium atrosepticum SCRI1043 2885043 YP_049890.1 CDS rluC NC_004547.2 2038594 2039550 D catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 2038594..2039550 Pectobacterium atrosepticum SCRI1043 2885049 YP_049891.1 CDS maf NC_004547.2 2039605 2040198 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(2039605..2040198) Pectobacterium atrosepticum SCRI1043 2881572 YP_049892.1 CDS ECA1792 NC_004547.2 2040339 2040860 D Similar to Yersinia pestis hypothetical protein ypo1594 or y1752 SWALL:Q8ZFU0 (EMBL:AJ414149) (174 aa) fasta scores: E(): 2.8e-56, 85.96% id in 171 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yced or g30k or b1088 or c1358 or z1727 or ecs1466 SWALL:YCED_ECOLI (SWALL:P14189) (173 aa) fasta scores: E(): 1e-53, 79.76% id in 173 aa; hypothetical protein 2040339..2040860 Pectobacterium atrosepticum SCRI1043 2881364 YP_049893.1 CDS rpmF NC_004547.2 2040877 2041047 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2040877..2041047 Pectobacterium atrosepticum SCRI1043 2884496 YP_049894.1 CDS plsX NC_004547.2 2041077 2042123 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2041077..2042123 Pectobacterium atrosepticum SCRI1043 2883468 YP_049895.1 CDS fabH NC_004547.2 2042130 2043083 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2042130..2043083 Pectobacterium atrosepticum SCRI1043 2883888 YP_049896.1 CDS fabD NC_004547.2 2043101 2044030 D Similar to Escherichia coli, and Escherichia coli O6 malonyl CoA-acyl carrier protein transacylase FabD or TfpA or b1092 or c1361 SWALL:FABD_ECOLI (SWALL:P25715) (308 aa) fasta scores: E(): 1.7e-91, 78.82% id in 307 aa; ACP S-malonyltransferase 2043101..2044030 Pectobacterium atrosepticum SCRI1043 2883912 YP_049897.1 CDS fabG NC_004547.2 2044045 2044779 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2044045..2044779 Pectobacterium atrosepticum SCRI1043 2883887 YP_049898.1 CDS acpP NC_004547.2 2044934 2045170 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2044934..2045170 Pectobacterium atrosepticum SCRI1043 2884761 YP_049899.1 CDS fabF NC_004547.2 2045253 2046494 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 2045253..2046494 Pectobacterium atrosepticum SCRI1043 2883913 YP_049900.1 CDS pabC NC_004547.2 2046622 2047419 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 2046622..2047419 Pectobacterium atrosepticum SCRI1043 2881518 YP_049901.1 CDS ECA1801 NC_004547.2 2047434 2048453 D Similar to Yersinia pestis exported protein ypo1604 SWALL:Q8ZFT1 (EMBL:AJ414149) (341 aa) fasta scores: E(): 8.7e-94, 69.79% id in 341 aa, and to Salmonella typhimurium periplasmic solute-binding protein yceg or stm1199 SWALL:Q8ZQ13 (EMBL:AE008752) (340 aa) fasta scores: E(): 8.3e-79, 62.64% id in 340 aa; aminodeoxychorismate lyase 2047434..2048453 Pectobacterium atrosepticum SCRI1043 2881365 YP_049902.1 CDS tmk NC_004547.2 2048443 2049102 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2048443..2049102 Pectobacterium atrosepticum SCRI1043 2884272 YP_049903.1 CDS holB NC_004547.2 2049102 2050112 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 2049102..2050112 Pectobacterium atrosepticum SCRI1043 2882077 YP_049904.1 CDS ECA1804 NC_004547.2 2050132 2050929 D Similar to Yersinia pestis deoxyribonuclease ypo1607 or y1766 SWALL:Q8ZFT0 (EMBL:AJ414149) (269 aa) fasta scores: E(): 1.2e-81, 75.47% id in 265 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein T1718 t1718 SWALL:AAO69342 (EMBL:AE016839) (265 aa) fasta scores: E(): 5e-78, 74.14% id in 263 aa; metallodependent hydrolase 2050132..2050929 Pectobacterium atrosepticum SCRI1043 2881366 YP_049905.1 CDS ptsG NC_004547.2 2051245 2052678 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunits IIBC 2051245..2052678 Pectobacterium atrosepticum SCRI1043 2881864 YP_049906.1 CDS ECA1808 NC_004547.2 2053746 2055224 D Similar to Streptomyces coelicolor probable actinorhodin transporter actii-2 or sco5083 or scbac28g1.09 SWALL:AC22_STRCO (SWALL:P46105) (578 aa) fasta scores: E(): 9e-55, 40.4% id in 443 aa, and to Streptomyces avermitilis transmembrane efflux protein SWALL:Q93HG4 (EMBL:AB070943) (489 aa) fasta scores: E(): 2.2e-68, 46.59% id in 455 aa; transporter 2053746..2055224 Pectobacterium atrosepticum SCRI1043 2881879 YP_049907.1 CDS ECA1809 NC_004547.2 2055442 2055792 D Similar to Yersinia pestis hypothetical protein ypo1611 ypo1611 or y1770 SWALL:Q8ZFS7 (EMBL:AJ414149) (117 aa) fasta scores: E(): 3.7e-38, 86.84% id in 114 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical protein ycff ycff or stm1205 or sty1245 SWALL:Q8XER7 (EMBL:AE008752) (119 aa) fasta scores: E(): 9.5e-38, 83.47% id in 115 aa; purine nucleoside phosphoramidase 2055442..2055792 Pectobacterium atrosepticum SCRI1043 2881880 YP_049908.1 CDS ECA1810 NC_004547.2 2055833 2056213 D Similar to Yersinia pestis lipoprotein ypo1612 SWALL:Q8ZFS6 (EMBL:AJ414149) (129 aa) fasta scores: E(): 1e-15, 44.53% id in 119 aa, and to Shigella flexneri orf, conserved hypothetical protein ycfl or sf1108 SWALL:AAN42726 (EMBL:AE015138) (125 aa) fasta scores: E(): 1.5e-14, 38.88% id in 126 aa; lipoprotein 2055833..2056213 Pectobacterium atrosepticum SCRI1043 2881881 YP_049909.1 CDS ECA1811 NC_004547.2 2056235 2056816 D Similar to Yersinia pestis lipoprotein ypo1613 or y1772 SWALL:Q8ZFS5 (EMBL:AJ414149) (191 aa) fasta scores: E(): 2.2e-33, 66.49% id in 194 aa, and to Salmonella typhimurium outer membrane lipoprotein ycfm or stm1207 SWALL:Q8ZQ08 (EMBL:AE008752) (212 aa) fasta scores: E(): 1.7e-24, 52.88% id in 208 aa; lipoprotein 2056235..2056816 Pectobacterium atrosepticum SCRI1043 2881882 YP_049910.1 CDS ECA1812 NC_004547.2 2056845 2057672 D Similar to Yersinia pestis hypothetical y1773 SWALL:Q8CLA0 (EMBL:AE013780) (295 aa) fasta scores: E(): 8.1e-51, 45.89% id in 268 aa, and to Escherichia coli O157:H7 beta-glucosidase ycfn or z1745 or ecs1484 SWALL:Q8X8G6 (EMBL:AE005320) (274 aa) fasta scores: E(): 1.2e-25, 36.77% id in 242 aa; hypothetical protein 2056845..2057672 Pectobacterium atrosepticum SCRI1043 2881883 YP_049911.1 CDS nagZ NC_004547.2 2057749 2058777 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2057749..2058777 Pectobacterium atrosepticum SCRI1043 2884609 YP_049912.1 CDS ECA1814 NC_004547.2 2058806 2059348 D Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein ycfp or stm1210 or sty1250 SWALL:Q8XGQ0 (EMBL:AE008752) (180 aa) fasta scores: E(): 8.5e-62, 82.77% id in 180 aa, and to Yersinia pestis hypothetical protein ypo1616 or y1776 SWALL:AAM85344 (EMBL:AJ414149) (180 aa) fasta scores: E(): 3.8e-61, 81.11% id in 180 aa; hypothetical protein 2058806..2059348 Pectobacterium atrosepticum SCRI1043 2882163 YP_049913.1 CDS ndh NC_004547.2 2059718 2061022 D Similar to Escherichia coli NADH dehydrogenase Ndh or b1109 SWALL:DHNA_ECOLI (SWALL:P00393) (433 aa) fasta scores: E(): 8e-134, 80.37% id in 433 aa; NADH dehydrogenase 2059718..2061022 Pectobacterium atrosepticum SCRI1043 2885654 YP_049914.1 CDS ECA1816 NC_004547.2 2061462 2062031 D Similar to Yersinia pestis hypothetical protein y1782 SWALL:AAM85350 (EMBL:AE013781) (188 aa) fasta scores: E(): 6.1e-55, 85.79% id in 183 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ycfj ycfj or b1110 or c1383 or sf1114 SWALL:AAN42732 (EMBL:AE000211) (192 aa) fasta scores: E(): 6.9e-52, 81.86% id in 182 aa; hypothetical protein 2061462..2062031 Pectobacterium atrosepticum SCRI1043 2882164 YP_049915.1 CDS ECA1817 NC_004547.2 2062113 2063309 R Similar to Streptomyces lividans sensor protein homolog SWALL:P72472 (EMBL:U63848) (410 aa) fasta scores: E(): 9.3e-49, 42.78% id in 388 aa, and to Streptomyces coelicolor integral membrane transport protein sco0079 or scj11.08C SWALL:Q9RI96 (EMBL:AL939104) (407 aa) fasta scores: E(): 1.1e-48, 42.78% id in 388 aa; transporter complement(2062113..2063309) Pectobacterium atrosepticum SCRI1043 2882165 YP_049916.1 CDS ECA1818 NC_004547.2 2063346 2064554 R Similar to Pseudomonas putida transporter, pp3961 SWALL:AAN69555 (EMBL:AE016788) (402 aa) fasta scores: E(): 5.9e-107, 75.25% id in 392 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2269 SWALL:Q9I1K4 (EMBL:AE004652) (401 aa) fasta scores: E(): 4.7e-74, 55.75% id in 391 aa; transporter complement(2063346..2064554) Pectobacterium atrosepticum SCRI1043 2885329 YP_049917.1 CDS ECA1819 NC_004547.2 2064690 2065280 D Similar to Pseudomonas putida transcriptional regulator, TetR family pp3960 SWALL:AAN69554 (EMBL:AE016788) (201 aa) fasta scores: E(): 1.5e-51, 74.35% id in 195 aa, and to Agrobacterium tumefaciens transcriptional regulator, TetR family atu4317 or agr_l_1093 SWALL:Q8U7Y2 (EMBL:AE009360) (201 aa) fasta scores: E(): 2.3e-29, 50% id in 196 aa; TetR family transcriptional regulator 2064690..2065280 Pectobacterium atrosepticum SCRI1043 2885330 YP_049918.1 CDS ECA1820 NC_004547.2 2065357 2066727 R Similar to Salmonella typhimurium heat shock protein yegd or stm2125 SWALL:Q8ZNQ4 (EMBL:AE008794) (450 aa) fasta scores: E(): 1.2e-121, 68.22% id in 450 aa, and to Escherichia coli hypothetical chaperone protein yegd yegd or b2069 SWALL:YEGD_ECOLI (SWALL:P36928) (450 aa) fasta scores: E(): 1.6e-121, 69.33% id in 450 aa; chaperone complement(2065357..2066727) Pectobacterium atrosepticum SCRI1043 2885331 YP_049919.1 CDS mfd NC_004547.2 2066956 2070405 R Similar to Escherichia coli transcription-repair coupling factor Mfd or b1114 SWALL:MFD_ECOLI (SWALL:P30958) (1148 aa) fasta scores: E(): 0, 83.1% id in 1148 aa; transcription-repair coupling factor complement(2066956..2070405) Pectobacterium atrosepticum SCRI1043 2883338 YP_049920.1 CDS lolC NC_004547.2 2070545 2071747 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 2070545..2071747 Pectobacterium atrosepticum SCRI1043 2885582 YP_049921.1 CDS lolD NC_004547.2 2071740 2072447 D outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 2071740..2072447 Pectobacterium atrosepticum SCRI1043 2885567 YP_049922.1 CDS lolE NC_004547.2 2072444 2073691 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 2072444..2073691 Pectobacterium atrosepticum SCRI1043 2885568 YP_049923.1 CDS ECA1826 NC_004547.2 2073776 2074690 D Similar to Escherichia coli hypothetical protein ycfx or b1119 SWALL:YCFX_ECOLI (SWALL:P75959) (303 aa) fasta scores: E(): 5.4e-79, 62.37% id in 303 aa, and to Salmonella typhimurium regulator ycfx or stm1220 SWALL:Q8ZPZ9 (EMBL:AE008753) (303 aa) fasta scores: E(): 1.7e-78, 62.37% id in 303 aa; hypothetical protein 2073776..2074690 Pectobacterium atrosepticum SCRI1043 2885332 YP_049924.1 CDS cobB NC_004547.2 2074702 2075532 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2074702..2075532 Pectobacterium atrosepticum SCRI1043 2884953 YP_049925.1 CDS ECA1828 NC_004547.2 2075555 2075833 R no significant database matches; hypothetical protein complement(2075555..2075833) Pectobacterium atrosepticum SCRI1043 2885146 YP_049926.1 CDS ECA1829 NC_004547.2 2076005 2076721 R Similar to Pseudomonas aeruginosa transcriptional activator protein Anr or pa1544 SWALL:ANR_PSEAE (SWALL:P23926) (244 aa) fasta scores: E(): 2.9e-09, 25.59% id in 211 aa, and to Pseudomonas stutzeri DnrE protein DnrE SWALL:Q9X7J7 (EMBL:AJ131716) (231 aa) fasta scores: E(): 8.4e-10, 28% id in 175 aa; Crp/Fnr family transcriptional regulator complement(2076005..2076721) Pectobacterium atrosepticum SCRI1043 2885147 YP_049927.1 CDS ECA1830 NC_004547.2 2076838 2077179 D Similar to Methanosarcina mazei hypothetical protein Mm1422 SWALL:Q8PX00 (EMBL:AE013376) (107 aa) fasta scores: E(): 1.9e-13, 43.56% id in 101 aa, and to Fusobacterium nucleatum hypothetical cytosolic protein Fn1305 SWALL:Q8RE25 (EMBL:AE010636) (111 aa) fasta scores: E(): 6e-08, 35.92% id in 103 aa; hypothetical protein 2076838..2077179 Pectobacterium atrosepticum SCRI1043 2885148 YP_049928.1 CDS ECA1831 NC_004547.2 2077218 2077982 D Similar to Haemophilus influenzae hypothetical protein Hi0095 SWALL:Y095_HAEIN (SWALL:Q57060) (251 aa) fasta scores: E(): 1e-51, 54.33% id in 254 aa, and to Pasteurella multocida hypothetical protein Pm1158 SWALL:Q9CLQ7 (EMBL:AE006156) (251 aa) fasta scores: E(): 1.9e-51, 53.54% id in 254 aa; methyltransferase 2077218..2077982 Pectobacterium atrosepticum SCRI1043 2885081 YP_049929.1 CDS btuC NC_004547.2 2078193 2079188 D with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 2078193..2079188 Pectobacterium atrosepticum SCRI1043 2882364 YP_049930.1 CDS btuE NC_004547.2 2079241 2079792 D similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; glutathione peroxidase 2079241..2079792 Pectobacterium atrosepticum SCRI1043 2882366 YP_049931.1 CDS btuD NC_004547.2 2079817 2080569 D ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 2079817..2080569 Pectobacterium atrosepticum SCRI1043 2882365 YP_049932.1 CDS nlpC NC_004547.2 2080938 2081411 D Similar to Escherichia coli probable lipoprotein nlpc precursor NlpC or b1708 SWALL:NLPC_ECOLI (SWALL:P23898) (154 aa) fasta scores: E(): 5e-43, 66.02% id in 156 aa, and to Yersinia pestis lipoprotein NlpC or ypo2415 or y1925 SWALL:Q8ZDY1 (EMBL:AJ414152) (154 aa) fasta scores: E(): 2.7e-43, 68.79% id in 157 aa; lipoprotein 2080938..2081411 Pectobacterium atrosepticum SCRI1043 2881291 YP_049933.1 CDS edd NC_004547.2 2081520 2083361 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(2081520..2083361) Pectobacterium atrosepticum SCRI1043 2881721 YP_049934.1 CDS ECA1837 NC_004547.2 2083658 2083858 D no significant database matches; hypothetical protein 2083658..2083858 Pectobacterium atrosepticum SCRI1043 2885082 YP_049935.1 CDS gntR NC_004547.2 2084214 2085209 D Similar to Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 7.1e-94, 74.62% id in 331 aa; gluconate utilization system Gnt-I transcriptional repressor 2084214..2085209 Pectobacterium atrosepticum SCRI1043 2881634 YP_049936.1 CDS gntV NC_004547.2 2085214 2085741 R Similar to Escherichia coli thermosensitive gluconokinase IdnK or GntV or b4268 SWALL:IDNK_ECOLI (SWALL:P39208) (187 aa) fasta scores: E(): 5.8e-34, 62.02% id in 158 aa; gluconokinase complement(2085214..2085741) Pectobacterium atrosepticum SCRI1043 2885363 YP_049937.1 CDS gntT NC_004547.2 2086038 2087372 D Similar to Escherichia coli high-affinity gluconate transporter GntT or UsgA or GntM or b3415 SWALL:GNTT_ECOLI (SWALL:P39835) (437 aa) fasta scores: E(): 3e-118, 76.8% id in 444 aa; high-affinity gluconate transporter 2086038..2087372 Pectobacterium atrosepticum SCRI1043 2881636 YP_049938.1 CDS ECA1841 NC_004547.2 2087583 2088308 D Similar to Escherichia coli hypothetical protein ydiv or b1707 SWALL:YDIV_ECOLI (SWALL:P76204) (237 aa) fasta scores: E(): 3.5e-23, 36.17% id in 235 aa, and to Shigella flexneri orf, conserved hypothetical protein ydiv or sf1524 SWALL:AAN43114 (EMBL:AE015175) (237 aa) fasta scores: E(): 3.1e-22, 35.74% id in 235 aa; hypothetical protein 2087583..2088308 Pectobacterium atrosepticum SCRI1043 2885083 YP_049939.1 CDS ECA1842 NC_004547.2 2088494 2089945 D Similar to Escherichia coli hypothetical protein ydiu or b1706 SWALL:YDIU_ECOLI (SWALL:P77649) (478 aa) fasta scores: E(): 5.7e-126, 64.56% id in 477 aa, and to Salmonella typhimurium cytoplasmic protein ydiu or stm1345 SWALL:Q8ZPS5 (EMBL:AE008758) (480 aa) fasta scores: E(): 7.7e-126, 63.59% id in 478 aa; hypothetical protein 2088494..2089945 Pectobacterium atrosepticum SCRI1043 2885186 YP_049940.1 CDS hmuV NC_004547.2 2089965 2090762 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(2089965..2090762) Pectobacterium atrosepticum SCRI1043 2881904 YP_049941.1 CDS hmuU NC_004547.2 2090755 2091759 R Similar to Yersinia pestis hemin transport system permease protein HmuU or ypo0280 or y0540 SWALL:HMUU_YERPE (SWALL:Q56992) (334 aa) fasta scores: E(): 2.2e-91, 72.34% id in 329 aa; hemin transport system permease complement(2090755..2091759) Pectobacterium atrosepticum SCRI1043 2881886 YP_049942.1 CDS hmuT NC_004547.2 2091756 2092574 R Similar to Yersinia pestis hemin-binding periplasmic protein HmuT precursor HmuT or ypo0281 or y0541 SWALL:HMUT_YERPE (SWALL:Q56991) (279 aa) fasta scores: E(): 2.7e-57, 60.66% id in 272 aa; hemin-binding periplasmic protein complement(2091756..2092574) Pectobacterium atrosepticum SCRI1043 2881885 YP_049943.1 CDS hemS NC_004547.2 2092571 2093620 R Similar to Yersinia enterocolitica hemin transport protein HemS SWALL:HEMS_YEREN (SWALL:P31517) (345 aa) fasta scores: E(): 2.2e-92, 65.33% id in 349 aa; hemin transport protein complement(2092571..2093620) Pectobacterium atrosepticum SCRI1043 2882232 YP_049944.1 CDS aglB NC_004547.2 2093827 2095149 R Similar to Klebsiella pneumoniae 6-phospho-alpha-glucosidase AglB SWALL:AGLB_KLEPN (SWALL:Q9AGA6) (440 aa) fasta scores: E(): 1.4e-152, 82.95% id in 440 aa; 6-phospho-alpha-glucosidase complement(2093827..2095149) Pectobacterium atrosepticum SCRI1043 2883200 YP_049945.1 CDS aglA NC_004547.2 2095152 2096741 R Similar to Klebsiella pneumoniae PTS system, alpha-glucoside-specific IIBC component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 6.7e-142, 69.04% id in 533 aa; PTS system alpha-glucoside-specific transporter subunit IIBC complement(2095152..2096741) Pectobacterium atrosepticum SCRI1043 2883214 YP_049946.1 CDS ECA1849 NC_004547.2 2097009 2097755 D Similar to Escherichia coli fatty acyl responsive regulator farr or g30 or b0730 SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 6e-25, 33.19% id in 235 aa, and to Shigella flexneri transcriptional regulator yidp or sf3779 SWALL:AAN45221 (EMBL:AE015385) (224 aa) fasta scores: E(): 1.8e-45, 54.01% id in 224 aa; GntR family transcriptional regulator 2097009..2097755 Pectobacterium atrosepticum SCRI1043 2885187 YP_049947.1 CDS palI NC_004547.2 2097796 2099496 R Similar to Erwinia rhapontici sucrose isomerase PalI SWALL:Q9AI64 (EMBL:AF279281) (600 aa) fasta scores: E(): 1.7e-171, 70.25% id in 558 aa; sucrose isomerase complement(2097796..2099496) Pectobacterium atrosepticum SCRI1043 2881780 YP_049948.1 CDS aroH NC_004547.2 2099981 2101027 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2099981..2101027) Pectobacterium atrosepticum SCRI1043 2884131 YP_049949.1 CDS ECA1852 NC_004547.2 2101232 2102053 R Similar to Yersinia pestis hypothetical protein ypo2410 or y1929 SWALL:AAM85495 (EMBL:AJ414152) (273 aa) fasta scores: E(): 8.8e-89, 83.15% id in 273 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ydia or b1703 or c2099 or z2732 or ecs2410 or sf1527 SWALL:YDIA_ECOLI (SWALL:P03822) (277 aa) fasta scores: E(): 1.4e-85, 80.22% id in 273 aa; hypothetical protein complement(2101232..2102053) Pectobacterium atrosepticum SCRI1043 2885188 YP_049950.1 CDS ppsA NC_004547.2 2102354 2104732 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2102354..2104732 Pectobacterium atrosepticum SCRI1043 2882730 YP_049951.1 CDS apbE NC_004547.2 2105019 2106065 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE complement(2105019..2106065) Pectobacterium atrosepticum SCRI1043 2884176 YP_049952.2 CDS ECA1855 NC_004547.2 2106565 2107677 R YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; inner membrane protein complement(2106565..2107677) Pectobacterium atrosepticum SCRI1043 2885093 YP_049953.1 CDS ECA1856 NC_004547.2 2108085 2111138 D Similar to Yersinia pestis hypothetical protein ypo2407 or y1932 SWALL:AAM85498 (EMBL:AJ414152) (1018 aa) fasta scores: E(): 0, 82.41% id in 1018 aa, and to Escherichia coli hypothetical protein ydij or b1687 SWALL:YDIJ_ECOLI (SWALL:P77748) (1018 aa) fasta scores: E(): 0, 79.05% id in 1017 aa; FAD-binding oxidase 2108085..2111138 Pectobacterium atrosepticum SCRI1043 2885094 YP_049954.1 CDS ECA1857 NC_004547.2 2111138 2111554 D Similar to Yersinia pestis hypothetical protein ypo2406 or y1933 SWALL:Q8ZDY8 (EMBL:AJ414152) (138 aa) fasta scores: E(): 1.6e-41, 77.37% id in 137 aa, and to Escherichia coli hypothetical protein ydii or b1686 SWALL:YDII_ECOLI (SWALL:P77781) (136 aa) fasta scores: E(): 9e-38, 69.11% id in 136 aa; hypothetical protein 2111138..2111554 Pectobacterium atrosepticum SCRI1043 2885095 YP_049955.1 CDS ECA1858 NC_004547.2 2111618 2112019 R no significant database matches; hypothetical protein complement(2111618..2112019) Pectobacterium atrosepticum SCRI1043 2884621 YP_049956.1 CDS sufA NC_004547.2 2112446 2112817 D functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 2112446..2112817 Pectobacterium atrosepticum SCRI1043 2884335 YP_049957.1 CDS sufB NC_004547.2 2112831 2114330 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 2112831..2114330 Pectobacterium atrosepticum SCRI1043 2884336 YP_049958.1 CDS sufC NC_004547.2 2114428 2115174 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase ATPase 2114428..2115174 Pectobacterium atrosepticum SCRI1043 2884337 YP_049959.1 CDS sufD NC_004547.2 2115176 2116495 D with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 2115176..2116495 Pectobacterium atrosepticum SCRI1043 2884332 YP_049960.1 CDS sufS NC_004547.2 2116495 2117718 D catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 2116495..2117718 Pectobacterium atrosepticum SCRI1043 2884329 YP_049961.1 CDS sufE NC_004547.2 2117752 2118168 D Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 2117752..2118168 Pectobacterium atrosepticum SCRI1043 2884333 YP_049962.1 CDS ECA1865 NC_004547.2 2118557 2119579 D Similar to Yersinia pestis hypothetical protein y1940 SWALL:AAM85506 (EMBL:AE013797) (354 aa) fasta scores: E(): 4.6e-90, 72.64% id in 340 aa, and to Shigella flexneri orf, conserved hypothetical protein ycfs or sf1117 SWALL:AAN42735 (EMBL:AE015138) (321 aa) fasta scores: E(): 2.7e-68, 62.98% id in 308 aa; hypothetical protein 2118557..2119579 Pectobacterium atrosepticum SCRI1043 2884622 YP_049963.1 CDS lpp NC_004547.2 2119771 2120007 R Similar to Erwinia amylovora major outer membrane lipoprotein precursor Lpp SWALL:MULI_ERWAM (SWALL:P02939) (78 aa) fasta scores: E(): 9e-23, 92.3% id in 78 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri major outer membrane lipoprotein precursor Lpp or MlpA or MulI or b1677 or c2072 or z2705 or ecs2384 or sf1706 SWALL:MULI_ECOLI (SWALL:P02937) (78 aa) fasta scores: E(): 1.8e-21, 89.74% id in 78 aa; major outer membrane lipoprotein complement(2119771..2120007) Pectobacterium atrosepticum SCRI1043 2882940 YP_049964.1 CDS pykF NC_004547.2 2120321 2121733 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(2120321..2121733) Pectobacterium atrosepticum SCRI1043 2882673 YP_049965.1 CDS ECA1868 NC_004547.2 2122001 2122237 R Weakly similar to Salmonella typhimurium cytoplasmic protein stm4422 SWALL:Q8ZK60 (EMBL:AE008907) (100 aa) fasta scores: E(): 8.7, 26.47% id in 68 aa, and to Pyrobaculum aerophilum ribosomal protein l24 pae3345 SWALL:Q8ZTA6 (EMBL:AE009925) (58 aa) fasta scores: E(): 9.4, 29.68% id in 64 aa; hypothetical protein complement(2122001..2122237) Pectobacterium atrosepticum SCRI1043 2884623 YP_049966.1 CDS arbG NC_004547.2 2122379 2123242 D Similar to Erwinia chrysanthemi beta-glucoside operon antiterminator ArbG SWALL:ARBG_ERWCH (SWALL:P26211) (283 aa) fasta scores: E(): 1.8e-83, 76.07% id in 280 aa, and to Escherichia coli cryptic beta-glucoside bgl operon antiterminator BglG or BglC or b3723 SWALL:BGLG_ECOLI (SWALL:P11989) (278 aa) fasta scores: E(): 6.2e-56, 53.26% id in 276 aa. Also similar to ECA1452 (45.600% id. in 250 aa overlap), and to ECA4389 (46.400% id. in 274 aa overlap), and to ECA0858 (38.000% id. in 272 aa overlap); beta-glucoside operon antiterminator 2122379..2123242 Pectobacterium atrosepticum SCRI1043 2884150 YP_049967.1 CDS arbF NC_004547.2 2123556 2125457 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system beta-glucoside-specific transporter subunit IIABC 2123556..2125457 Pectobacterium atrosepticum SCRI1043 2884149 YP_049968.1 CDS arbB NC_004547.2 2125493 2126887 D Similar to Erwinia chrysanthemi 6-phospho-beta-glucosidase ArbB SWALL:ARBB_ERWCH (SWALL:P26206) (465 aa) fasta scores: E(): 2.3e-165, 80.56% id in 463 aa, and to Escherichia coli 6-phospho-beta-glucosidase BglB or b3721 SWALL:BGLB_ECOLI (SWALL:P11988) (470 aa) fasta scores: E(): 1.1e-149, 72.6% id in 460 aa; 6-phospho-beta-glucosidase 2125493..2126887 Pectobacterium atrosepticum SCRI1043 2884159 YP_049969.1 CDS ECA1872 NC_004547.2 2127146 2128786 D Similar to Aeromonas salmonicida maltoporin precursor LamB SWALL:LAMB_AERSA (SWALL:Q44287) (445 aa) fasta scores: E(): 1.8e-16, 32.18% id in 463 aa, and to Escherichia coli outer membrane protein yiec precursor yiec or b3720 SWALL:YIEC_ECOLI (SWALL:P26218) (538 aa) fasta scores: E(): 1.5e-109, 53.09% id in 550 aa; porin 2127146..2128786 Pectobacterium atrosepticum SCRI1043 2884624 YP_049970.1 CDS ECA1873 NC_004547.2 2128873 2130063 D Similar to Escherichia coli O6 hypothetical protein yiel or c4641 SWALL:AAN83073 (EMBL:AE016769) (400 aa) fasta scores: E(): 4.7e-106, 70.57% id in 401 aa, and to Shigella flexneri xylanase yiel or sf3738 SWALL:AAN45183 (EMBL:AE015381) (402 aa) fasta scores: E(): 5.9e-105, 70.07% id in 401 aa; glycosyl hydrolase 2128873..2130063 Pectobacterium atrosepticum SCRI1043 2884579 YP_049971.1 CDS ECA1874 NC_004547.2 2130168 2131181 D Similar to Xanthomonas campestris inosine-uridine preferring nucleoside hydrolase xcc1038 SWALL:Q8PBT1 (EMBL:AE012200) (316 aa) fasta scores: E(): 5.3e-08, 29.32% id in 283 aa, and to Bradyrhizobium japonicum Blr4705 protein blr4705 SWALL:BAC49970 (EMBL:AP005952) (308 aa) fasta scores: E(): 8.5e-17, 28.66% id in 300 aa; inosine-uridine preferring nucleoside hydrolase 2130168..2131181 Pectobacterium atrosepticum SCRI1043 2884580 YP_049972.1 CDS nrfA NC_004547.2 2131621 2133054 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 2131621..2133054 Pectobacterium atrosepticum SCRI1043 2881814 YP_049973.1 CDS nrfB NC_004547.2 2133102 2133671 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 2133102..2133671 Pectobacterium atrosepticum SCRI1043 2881815 YP_049974.1 CDS nrfC NC_004547.2 2133668 2134339 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri NrfC protein precursor NrfC or b4072 or z5671 or ecs5054 or sf4132 SWALL:NRFC_ECOLI (SWALL:P32708) (223 aa) fasta scores: E(): 8.4e-76, 83.4% id in 223 aa. Also similar to ECA0914 (56.444% id. in 225 aa overlap); nitrite reductase complex component 2133668..2134339 Pectobacterium atrosepticum SCRI1043 2885090 YP_049975.1 CDS nrfD NC_004547.2 2134336 2135298 D Similar to Escherichia coli NrfD protein NrfD or b4073 SWALL:NRFD_ECOLI (SWALL:P32709) (318 aa) fasta scores: E(): 2.2e-95, 73.56% id in 314 aa. Also similar to ECA0913 (50.784% id. in 319 aa overlap); nitrite reductase complex component 2134336..2135298 Pectobacterium atrosepticum SCRI1043 2885091 YP_049976.1 CDS nrfE NC_004547.2 2135317 2137194 D with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; heme lyase subunit NrfE 2135317..2137194 Pectobacterium atrosepticum SCRI1043 2885092 YP_049977.1 CDS nrfF NC_004547.2 2137187 2137588 D Similar to Escherichia coli formate-dependent nitrite reductase complex NrfF subunit precursor nrff or b4075 SWALL:NRFF_ECOLI (SWALL:P32711) (127 aa) fasta scores: E(): 1.3e-26, 59.35% id in 123 aa; formate-dependent nitrite reductase complex subunit NrfF 2137187..2137588 Pectobacterium atrosepticum SCRI1043 2885413 YP_049978.1 CDS nrfG NC_004547.2 2137585 2138415 D Similar to Escherichia coli formate-dependent nitrite reductase complex NrfG subunit NrfG or b4076 SWALL:NRFG_ECOLI (SWALL:P32712) (198 aa) fasta scores: E(): 3.6e-35, 55.78% id in 190 aa; formate-dependent nitrite reductase complex subunit NrfG 2137585..2138415 Pectobacterium atrosepticum SCRI1043 2885414 YP_049979.1 CDS ccmA NC_004547.2 2138606 2139226 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 2138606..2139226 Pectobacterium atrosepticum SCRI1043 2882166 YP_049980.1 CDS ccmB NC_004547.2 2139226 2139882 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 heme exporter protein B CcmB or b2200 or c2737 or z3457 or ecs3089 SWALL:CCMB_ECOLI (SWALL:P33930) (220 aa) fasta scores: E(): 4.7e-62, 78.24% id in 216 aa; heme exporter protein B 2139226..2139882 Pectobacterium atrosepticum SCRI1043 2882167 YP_049981.1 CDS ccmC NC_004547.2 2139951 2140691 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri heme exporter protein C CcmC or b2199 or c2736 or z3456 or ecs3088 or sf2283 SWALL:CCMC_ECOLI (SWALL:P33929) (245 aa) fasta scores: E(): 3.1e-70, 69.54% id in 243 aa; heme exporter protein C 2139951..2140691 Pectobacterium atrosepticum SCRI1043 2882168 YP_049982.1 CDS ccmD NC_004547.2 2140688 2140909 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri heme exporter protein D CcmD or b2198 or c2735 or z3455 or ecs3087 or sf2282 SWALL:CCMD_ECOLI (SWALL:P36770) (69 aa) fasta scores: E(): 1.1e-11, 52.23% id in 67 aa; heme exporter protein D 2140688..2140909 Pectobacterium atrosepticum SCRI1043 2881537 YP_049983.1 CDS ccmE NC_004547.2 2140906 2141388 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 2140906..2141388 Pectobacterium atrosepticum SCRI1043 2881538 YP_049984.1 CDS ccmF NC_004547.2 2141385 2143340 D Similar to Escherichia coli cytochrome C-type biogenesis protein CcmF or b2196 SWALL:CCMF_ECOLI (SWALL:P33927) (647 aa) fasta scores: E(): 1.2e-198, 74% id in 650 aa; cytochrome C-type biogenesis protein 2141385..2143340 Pectobacterium atrosepticum SCRI1043 2881539 YP_049985.1 CDS dsbE NC_004547.2 2143337 2143894 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri thiol:disulfide interchange protein DsbE or CcmG or b2195 or z3452 or ecs3084 or sf2279 SWALL:DSBE_ECOLI (SWALL:P33926) (185 aa) fasta scores: E(): 5.4e-57, 77.47% id in 182 aa; thiol:disulfide interchange protein 2143337..2143894 Pectobacterium atrosepticum SCRI1043 2882296 YP_049986.1 CDS ccmH1 NC_004547.2 2143891 2144349 D Similar to the N-terminal half of Escherichia coli, and Shigella flexneri cytochrome c-type biogenesis protein CcmH precursor CcmH or b2194 or sf2278 SWALL:CCMH_ECOLI (SWALL:P33925) (350 aa) fasta scores: E(): 1e-28, 59.12% id in 137 aa; cytochrome C-type biogenesis protein 2143891..2144349 Pectobacterium atrosepticum SCRI1043 2881777 YP_049987.1 CDS ccmH2 NC_004547.2 2144346 2145215 D Similar to the C-terminal half of Escherichia coli, and Shigella flexneri cytochrome C-type biogenesis protein CcmH precursor CcmH or b2194 or sf2278 SWALL:CCMH_ECOLI (SWALL:P33925) (350 aa) fasta scores: E(): 5.9e-35, 48.14% id in 216 aa; cytochrome C-type biogenesis protein 2144346..2145215 Pectobacterium atrosepticum SCRI1043 2881778 YP_049988.1 CDS ECA1891 NC_004547.2 2145339 2145536 D DoubtfulCDS. No significant database matches; hypothetical protein 2145339..2145536 Pectobacterium atrosepticum SCRI1043 2884581 YP_049989.1 CDS napC NC_004547.2 2145886 2146500 R with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC complement(2145886..2146500) Pectobacterium atrosepticum SCRI1043 2884041 YP_049990.1 CDS napB NC_004547.2 2146497 2146934 R small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit complement(2146497..2146934) Pectobacterium atrosepticum SCRI1043 2884040 YP_049991.1 CDS napH NC_004547.2 2146931 2147794 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(2146931..2147794) Pectobacterium atrosepticum SCRI1043 2884003 YP_049992.1 CDS napG NC_004547.2 2147781 2148473 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(2147781..2148473) Pectobacterium atrosepticum SCRI1043 2884002 YP_049993.1 CDS napA NC_004547.2 2148479 2150965 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(2148479..2150965) Pectobacterium atrosepticum SCRI1043 2884039 YP_049994.1 CDS napD NC_004547.2 2150962 2151231 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri napd protein NapD or b2207 or z3464 or ecs3096 or sf2291 SWALL:NAPD_ECOLI (SWALL:P33938) (87 aa) fasta scores: E(): 8.9e-14, 50.56% id in 89 aa; assembly protein for periplasmic nitrate reductase complement(2150962..2151231) Pectobacterium atrosepticum SCRI1043 2884042 YP_049995.1 CDS napF NC_004547.2 2151228 2151764 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ferredoxin-type protein NapF or b2208 or c2747 or z3465 or ecs3097 SWALL:NAPF_ECOLI (SWALL:P33939) (164 aa) fasta scores: E(): 9.9e-37, 53.79% id in 158 aa; ferredoxin-type protein complement(2151228..2151764) Pectobacterium atrosepticum SCRI1043 2884001 YP_049996.1 CDS ECA1899 NC_004547.2 2151923 2152120 D no significant database matches; hypothetical protein 2151923..2152120 Pectobacterium atrosepticum SCRI1043 2884720 YP_049997.1 CDS narQ NC_004547.2 2152117 2153838 D Similar to Escherichia coli nitrate/nitrite sensor protein NarQ or b2469 SWALL:NARQ_ECOLI (SWALL:P27896) (566 aa) fasta scores: E(): 3.6e-131, 64.45% id in 557 aa; nitrate/nitrite sensor protein NarQ 2152117..2153838 Pectobacterium atrosepticum SCRI1043 2883597 YP_049998.1 CDS narP NC_004547.2 2153926 2154558 D nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2153926..2154558 Pectobacterium atrosepticum SCRI1043 2883596 YP_049999.1 CDS ECA1902 NC_004547.2 2154856 2155701 D Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 1.8e-23, 31.85% id in 270 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20572 SWALL:Q8D6G1 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.4e-21, 30.65% id in 274 aa; AraC family transcriptional regulator 2154856..2155701 Pectobacterium atrosepticum SCRI1043 2884721 YP_050000.1 CDS ECA1903 NC_004547.2 2155750 2157117 D Similar to Mycobacterium tuberculosis two-domain membrane protein rv3728 or mt3831 or mtv025.076 SWALL:O69695 (EMBL:AL022121) (1071 aa) fasta scores: E(): 1.6e-42, 38.68% id in 455 aa, and to Streptomyces coelicolor integral membrane efflux protein sco6553 or sc4b5.03C SWALL:Q9ZBW5 (EMBL:AL939128) (504 aa) fasta scores: E(): 1.1e-33, 35.12% id in 410 aa; hypothetical protein 2155750..2157117 Pectobacterium atrosepticum SCRI1043 2884722 YP_050001.1 CDS ECA1904 NC_004547.2 2157266 2158261 R Similar to Rhizobium loti probable zinc-binding oxidoreductase mll2116 SWALL:Q98J41 (EMBL:AP002999) (334 aa) fasta scores: E(): 2.9e-75, 64.56% id in 333 aa, and to Agrobacterium tumefaciens zinc-binding oxidoreductase atu5447 or agr_pat_656 SWALL:Q8UJM9 (EMBL:AE008965) (359 aa) fasta scores: E(): 2.5e-74, 62.23% id in 331 aa; zinc-binding dehydrogenase complement(2157266..2158261) Pectobacterium atrosepticum SCRI1043 2884678 YP_050002.1 CDS ECA1905 NC_004547.2 2158370 2159158 R Similar to Pseudomonas putida oxidoreductase, short chain dehydrogenase/reductase family pp2989 SWALL:AAN68597 (EMBL:AE016785) (264 aa) fasta scores: E(): 7.5e-67, 74.71% id in 261 aa, and to Agrobacterium tumefaciens short-chain dehydrogenase atu5444 or agr_pat_651 SWALL:Q8UJN2 (EMBL:AE008965) (287 aa) fasta scores: E(): 4.6e-55, 64.86% id in 259 aa; short chain dehydrogenase complement(2158370..2159158) Pectobacterium atrosepticum SCRI1043 2884679 YP_050003.1 CDS ECA1906 NC_004547.2 2160262 2161053 D Similar to Clostridium perfringens hypothetical protein Cpe0723 cpe0723 SWALL:Q8XMG6 (EMBL:AP003187) (262 aa) fasta scores: E(): 2.4e-24, 33.07% id in 260 aa, and to Vibrio vulnificus predicted hydrolase of the had superfamily vv21429 SWALL:AAO08308 (EMBL:AE016813) (267 aa) fasta scores: E(): 2.1e-23, 31.67% id in 262 aa; hydrolase 2160262..2161053 Pectobacterium atrosepticum SCRI1043 2884680 YP_050004.1 CDS ECA1907 NC_004547.2 2161087 2161860 R Similar to Rhizobium meliloti transcription regulator protein r03273 or smc03890 SWALL:Q92L17 (EMBL:AL591793) (260 aa) fasta scores: E(): 1.2e-30, 37.5% id in 248 aa, and to Agrobacterium tumefaciens transcriptional regulator, DeoR family atu2725 or agr_c_4939 SWALL:Q8UBX4 (EMBL:AE009218) (266 aa) fasta scores: E(): 1.2e-30, 39.67% id in 247 aa; DeoR family transcriptional regulator complement(2161087..2161860) Pectobacterium atrosepticum SCRI1043 2884658 YP_050005.1 CDS ECA1908 NC_004547.2 2162123 2163253 D Similar to Rhodococcus fascians integral membrane protein SWALL:CAD52983 (EMBL:AJ301559) (379 aa) fasta scores: E(): 2.4e-32, 35.1% id in 376 aa, and to Leptospira interrogans predicted DNA repair exonuclease la3166 SWALL:AAN50364 (EMBL:AE011479) (280 aa) fasta scores: E(): 1.5e-31, 40.22% id in 271 aa; membrane-attached phosphoesterase 2162123..2163253 Pectobacterium atrosepticum SCRI1043 2884659 YP_050006.1 CDS katB NC_004547.2 2163569 2165743 D Similar to Legionella pneumophila catalase-peroxidase KatB SWALL:Q9ZGM4 (EMBL:AF078110) (721 aa) fasta scores: E(): 0, 78.28% id in 723 aa, and to Synechococcus sp. catalase-peroxidase SWALL:Q9R6S9 (EMBL:AF197161) (720 aa) fasta scores: E(): 0, 78.75% id in 720 aa; catalase-peroxidase 2163569..2165743 Pectobacterium atrosepticum SCRI1043 2885367 YP_050007.1 CDS ECA1910 NC_004547.2 2165829 2166092 R Similar to Yersinia pestis hypothetical protein ypo0865 or y3250 SWALL:Q8ZHM6 (EMBL:AJ414145) (106 aa) fasta scores: E(): 7.5e-08, 39.78% id in 93 aa; hypothetical protein complement(2165829..2166092) Pectobacterium atrosepticum SCRI1043 2884660 YP_050008.1 CDS ECA1911 NC_004547.2 2166174 2166587 D Similar to Pseudomonas aeruginosa multidrug resistance operon repressor MexR or pa0424 SWALL:MEXR_PSEAE (SWALL:P52003) (147 aa) fasta scores: E(): 1.3e-06, 30.07% id in 133 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein bll4921 SWALL:BAC50186 (EMBL:AP005953) (169 aa) fasta scores: E(): 7.3e-06, 40.2% id in 97 aa; MarR family transcriptional regulator 2166174..2166587 Pectobacterium atrosepticum SCRI1043 2883986 YP_050009.1 CDS ECA1912 NC_004547.2 2166931 2167989 D Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA or SsiA or b0365 SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): 9.5e-05, 22.56% id in 226 aa, and to Caulobacter crescentus ABC transporter, periplasmic substrate-binding protein cc1833 SWALL:Q9A793 (EMBL:AE005857) (369 aa) fasta scores: E(): 3.6e-67, 55.78% id in 337 aa, and to Synechocystis sp. hypothetical protein Sll1080 SWALL:P73267 (EMBL:D90905) (352 aa) fasta scores: E(): 1.5e-19, 28.97% id in 283 aa; ABC transporter periplasmic protein 2166931..2167989 Pectobacterium atrosepticum SCRI1043 2883987 YP_050010.1 CDS ECA1913 NC_004547.2 2168013 2168828 D Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or b0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 1.8e-22, 35.07% id in 268 aa, and to Caulobacter crescentus ABC transporter, permease protein cc1832 SWALL:Q9A794 (EMBL:AE005857) (271 aa) fasta scores: E(): 1.8e-50, 53% id in 266 aa; ABC transporter permease 2168013..2168828 Pectobacterium atrosepticum SCRI1043 2883988 YP_050011.1 CDS ECA1914 NC_004547.2 2168825 2169616 D Similar to Caulobacter crescentus ABC transporter, ATP-binding protein cc1831 SWALL:Q9A795 (EMBL:AE005857) (253 aa) fasta scores: E(): 1e-52, 57.74% id in 239 aa, and to Synechocystis sp. nitrate transport protein NrtD or slr0044 SWALL:Q55463 (EMBL:D64006) (282 aa) fasta scores: E(): 2.7e-29, 39.59% id in 245 aa; ABC transporter ATP-binding protein 2168825..2169616 Pectobacterium atrosepticum SCRI1043 2883989 YP_050012.1 CDS ECA1915 NC_004547.2 2169627 2170376 D Similar to Caulobacter crescentus hypothetical protein Cc1827 SWALL:Q9A799 (EMBL:AE005857) (279 aa) fasta scores: E(): 4.8e-22, 37.88% id in 227 aa, and to Corynebacterium efficiens conserved hypothetical protein ce0715 SWALL:BAC17525 (EMBL:AP005216) (292 aa) fasta scores: E(): 2e-16, 33.47% id in 227 aa; hypothetical protein 2169627..2170376 Pectobacterium atrosepticum SCRI1043 2883972 YP_050013.1 CDS ECA1916 NC_004547.2 2170388 2171023 D Similar to Caulobacter crescentus hypothetical protein Cc1828 SWALL:Q9A798 (EMBL:AE005857) (208 aa) fasta scores: E(): 7.8e-41, 53.03% id in 198 aa, and to Corynebacterium efficiens conserved hypothetical protein ce0714 SWALL:BAC17524 (EMBL:AP005216) (238 aa) fasta scores: E(): 1.6e-32, 43.78% id in 201 aa; hypothetical protein 2170388..2171023 Pectobacterium atrosepticum SCRI1043 2883973 YP_050014.1 CDS ECA1917 NC_004547.2 2171266 2174868 D Similar to the C-terminal region of Saccharomyces cerevisiae urea amidolyase [includes: urea carboxylase and allophanate hydrolase Dur1,2 or ybr208c or ybr1448 SWALL:DUR1_YEAST (SWALL:P32528) (1835 aa) fasta scores: E(): 3.6e-203, 44.47% id in 1212 aa, and to Caulobacter crescentus urea amidolyase-related protein cc1829 SWALL:Q9A797 (EMBL:AE005857) (1207 aa) fasta scores: E(): 0, 56.38% id in 1206 aa; allophanate hydrolase 2171266..2174868 Pectobacterium atrosepticum SCRI1043 2883974 YP_050015.1 CDS ECA1918 NC_004547.2 2174920 2175615 R Similar to Shigella flexneri orf, conserved hypothetical protein ykgg or sf0258 SWALL:AAN41918 (EMBL:AE015061) (231 aa) fasta scores: E(): 4.1e-59, 66.23% id in 231 aa, and to Escherichia coli hypothetical protein ykgg or b0308 SWALL:YKGG_ECOLI (SWALL:P77433) (231 aa) fasta scores: E(): 1.3e-58, 65.8% id in 231 aa; hypothetical protein complement(2174920..2175615) Pectobacterium atrosepticum SCRI1043 2883930 YP_050016.1 CDS ECA1919 NC_004547.2 2175615 2177036 R Similar to Escherichia coli electron transport protein ykgf or b0307 SWALL:YKGF_ECOLI (SWALL:P77536) (475 aa) fasta scores: E(): 1.4e-163, 85.83% id in 473 aa, and to Shigella flexneri orf, conserved hypothetical protein ykgf or sf0259 SWALL:AAN41919 (EMBL:AE015061) (475 aa) fasta scores: E(): 1.7e-163, 85.83% id in 473 aa; electron transport protein complement(2175615..2177036) Pectobacterium atrosepticum SCRI1043 2883931 YP_050017.1 CDS ECA1920 NC_004547.2 2177046 2177765 R Similar to Escherichia coli hypothetical protein ykge or b0306 SWALL:YKGE_ECOLI (SWALL:P77252) (239 aa) fasta scores: E(): 3.5e-78, 79.49% id in 239 aa, and to Shigella flexneri dehydrogenase subunit ykge or sf0260 SWALL:AAN41920 (EMBL:AE015061) (239 aa) fasta scores: E(): 1.7e-78, 80.33% id in 239 aa; hypothetical protein complement(2177046..2177765) Pectobacterium atrosepticum SCRI1043 2883932 YP_050018.1 CDS ECA1921 NC_004547.2 2177811 2179364 R Similar to Streptococcus iniae L-lactate permease LctP SWALL:LCTP_STRIN (SWALL:O33654) (474 aa) fasta scores: E(): 4.3e-39, 41.53% id in 455 aa, and to Escherichia coli L-lactate permease LLdP or LctP or b3603 SWALL:LLDP_ECOLI (SWALL:P33231) (551 aa) fasta scores: E(): 7.8e-27, 33.64% id in 535 aa; L-lactate permease complement(2177811..2179364) Pectobacterium atrosepticum SCRI1043 2883924 YP_050019.1 CDS norM NC_004547.2 2179897 2181270 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(2179897..2181270) Pectobacterium atrosepticum SCRI1043 2881996 YP_050020.1 CDS ECA1923 NC_004547.2 2181519 2182154 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2181519..2182154 Pectobacterium atrosepticum SCRI1043 2883925 YP_050021.1 CDS cfa NC_004547.2 2182216 2183367 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(2182216..2183367) Pectobacterium atrosepticum SCRI1043 2881442 YP_050022.1 CDS purR NC_004547.2 2183675 2184700 R binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR complement(2183675..2184700) Pectobacterium atrosepticum SCRI1043 2884639 YP_050023.1 CDS ECA1926 NC_004547.2 2185274 2186125 R Similar to Yersinia pestis exported protein ypo2385 SWALL:Q8ZE05 (EMBL:AJ414152) (288 aa) fasta scores: E(): 3.8e-45, 54.94% id in 293 aa, and to Escherichia coli hypothetical protein ydho precursor ydho or b1655 SWALL:YDHO_ECOLI (SWALL:P76190) (271 aa) fasta scores: E(): 1.2e-37, 52.48% id in 282 aa; hypothetical protein complement(2185274..2186125) Pectobacterium atrosepticum SCRI1043 2883926 YP_050024.1 CDS ECA1927 NC_004547.2 2186467 2186817 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri protein ydhd or b1654 or c2048 or z2676 or ecs2363 or sf1682 SWALL:YDHD_ECOLI (SWALL:P37010) (115 aa) fasta scores: E(): 5e-40, 88.79% id in 116 aa, and to Salmonella typhimurium, and Salmonella typhi glutaredoxin protein ydhd or stm1433 or sty1689 SWALL:Q8XGR7 (EMBL:AE008762) (115 aa) fasta scores: E(): 1.5e-40, 90.51% id in 116 aa; hypothetical protein 2186467..2186817 Pectobacterium atrosepticum SCRI1043 2883869 YP_050025.1 CDS rnt NC_004547.2 2186929 2187600 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(2186929..2187600) Pectobacterium atrosepticum SCRI1043 2885029 YP_050026.1 CDS gloA NC_004547.2 2187750 2188157 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri lactoylglutathione lyase GloA or b1651 or z2669 or ecs2360 or sf1678 SWALL:LGUL_ECOLI (SWALL:Q59384) (135 aa) fasta scores: E(): 1.1e-41, 79.25% id in 135 aa; lactoylglutathione lyase complement(2187750..2188157) Pectobacterium atrosepticum SCRI1043 2881331 YP_050027.1 CDS ECA1930 NC_004547.2 2188321 2188686 D Similar to Yersinia pestis hypothetical protein Ypo2376 SWALL:Q8ZE14 (EMBL:AJ414152) (121 aa) fasta scores: E(): 8.5e-22, 58.76% id in 97 aa, and to Escherichia coli O157:H7 orf, hypothetical protein z2665 or ecs2358 SWALL:Q8X634 (EMBL:AE005388) (125 aa) fasta scores: E(): 1.4e-19, 53.84% id in 104 aa; hypothetical protein 2188321..2188686 Pectobacterium atrosepticum SCRI1043 2883870 YP_050028.1 CDS hor NC_004547.2 2188917 2189354 D Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 2188917..2189354 Pectobacterium atrosepticum SCRI1043 2881631 YP_050029.1 CDS pcp NC_004547.2 2189487 2189954 R Similar to Pectobacterium carotovorum subsp. carotovorum outer membrane lipoprotein Pcp SWALL:Q9RB08 (EMBL:AF168687) (155 aa) fasta scores: E(): 2.2e-44, 99.35% id in 155 aa, and to Serratia sp. ATCC 39006 outer membrane lipoprotein Pcp SWALL:Q9RA95 (EMBL:AF168597) (155 aa) fasta scores: E(): 9.6e-39, 83.22% id in 155 aa; outer membrane lipoprotein complement(2189487..2189954) Pectobacterium atrosepticum SCRI1043 2881377 YP_050030.1 CDS anmK NC_004547.2 2190305 2191417 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 2190305..2191417 Pectobacterium atrosepticum SCRI1043 2883871 YP_050031.1 CDS ECA1934 NC_004547.2 2191515 2191832 D Similar to Yersinia pestis lipoprotein ypo2371 SWALL:Q8ZE18 (EMBL:AJ414152) (104 aa) fasta scores: E(): 1.1e-16, 53.33% id in 105 aa, and to Yersinia enterocolitica hypothetical protein SWALL:YOR4_YEREN (SWALL:P28837) (101 aa) fasta scores: E(): 2.1e-15, 51.54% id in 97 aa; lipoprotein 2191515..2191832 Pectobacterium atrosepticum SCRI1043 2883865 YP_050032.1 CDS pdxH NC_004547.2 2191939 2192622 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 2191939..2192622 Pectobacterium atrosepticum SCRI1043 2882128 YP_050033.1 CDS tyrS NC_004547.2 2192856 2194133 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 2192856..2194133 Pectobacterium atrosepticum SCRI1043 2884221 YP_050034.1 CDS pdxY NC_004547.2 2194218 2195078 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 2194218..2195078 Pectobacterium atrosepticum SCRI1043 2882175 YP_050035.1 CDS gst NC_004547.2 2195117 2195725 R Similar to Escherichia coli, and Escherichia coli O157:H7 glutathione s-transferase Gst or b1635 or z2647 or ecs2344 SWALL:GT_ECOLI (SWALL:P39100) (201 aa) fasta scores: E(): 3.8e-39, 53.23% id in 201 aa; glutathione S-transferase complement(2195117..2195725) Pectobacterium atrosepticum SCRI1043 2883842 YP_050036.1 CDS ECA1939 NC_004547.2 2196576 2197859 D Similar to Escherichia coli O157:H7 symport protein z0888 or ecs0758 SWALL:Q8X4W0 (EMBL:AE005251) (426 aa) fasta scores: E(): 2.1e-69, 49.63% id in 413 aa, and to Ralstonia solanacearum glutamate symport transmembrane protein rsc1957 or rs03531 SWALL:Q8XY06 (EMBL:AL646067) (428 aa) fasta scores: E(): 2.5e-96, 63.4% id in 429 aa; glutamate symport protein 2196576..2197859 Pectobacterium atrosepticum SCRI1043 2883866 YP_050037.1 CDS ECA1940 NC_004547.2 2197950 2198201 D no significant database matches; hypothetical protein 2197950..2198201 Pectobacterium atrosepticum SCRI1043 2883867 YP_050038.1 CDS acnA NC_004547.2 2198282 2200954 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2198282..2200954 Pectobacterium atrosepticum SCRI1043 2884798 YP_050039.1 CDS ECA1942 NC_004547.2 2201168 2202799 D Similar to Escherichia coli periplasmic oligopeptide-binding protein precursor OppA or b1243 SWALL:OPPA_ECOLI (SWALL:P23843) (543 aa) fasta scores: E(): 1.2e-106, 49.35% id in 545 aa; periplasmic oligopeptide-binding protein 2201168..2202799 Pectobacterium atrosepticum SCRI1043 2883868 YP_050040.1 CDS ribA NC_004547.2 2202874 2203467 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(2202874..2203467) Pectobacterium atrosepticum SCRI1043 2884801 YP_050041.1 CDS pgpB NC_004547.2 2203741 2204517 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phosphatidylglycerophosphatase B PgpB or b1278 or z2529 or ecs1851 or sf1282 SWALL:PGPB_ECOLI (SWALL:P18201) (254 aa) fasta scores: E(): 6.1e-68, 61.75% id in 251 aa; phosphatidylglycerophosphatase B 2203741..2204517 Pectobacterium atrosepticum SCRI1043 2884539 YP_050042.1 CDS ECA1947 NC_004547.2 2205803 2206441 D Similar to Yersinia pestis hypothetical protein ypo3317 or y0872 SWALL:Q9X6A8 (EMBL:AF135170) (205 aa) fasta scores: E(): 1.9e-27, 46.77% id in 186 aa; lipoprotein 2205803..2206441 Pectobacterium atrosepticum SCRI1043 2883832 YP_050043.1 CDS ECA1948 NC_004547.2 2206441 2207994 D Similar to Escherichia coli D-xylose transport ATP-binding protein XylG or b3567 SWALL:XYLG_ECOLI (SWALL:P37388) (513 aa) fasta scores: E(): 3.6e-64, 41.23% id in 502 aa, and to Yersinia pestis sugar ABC transporter, ATP-binding protein ypo3316 or y0873 SWALL:AAM84458 (EMBL:AJ414156) (507 aa) fasta scores: E(): 2.3e-134, 78.52% id in 503 aa; sugar ABC transporter ATP-binding protein 2206441..2207994 Pectobacterium atrosepticum SCRI1043 2883833 YP_050044.1 CDS ECA1949 NC_004547.2 2207996 2209093 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 2e-30, 38.92% id in 316 aa, and to Yersinia pestis sugar ABC transporter, permease protein ypo3315 or RbsC or y0874 SWALL:Q8ZBT0 (EMBL:AJ414156) (381 aa) fasta scores: E(): 5.3e-111, 87.84% id in 362 aa; sugar ABC transporter permease 2207996..2209093 Pectobacterium atrosepticum SCRI1043 2883786 YP_050045.1 CDS ECA1950 NC_004547.2 2209283 2210113 D Similar to the N-terminal region of Homo sapiens transketolase Tkt or Tkt1 SWALL:TKT_HUMAN (SWALL:P29401) (623 aa) fasta scores: E(): 1.8e-21, 34.22% id in 263 aa, and to Yersinia pestis N-terminal region of transketolase ypo3314 SWALL:Q8ZBT1 (EMBL:AJ414156) (276 aa) fasta scores: E(): 3e-96, 88.4% id in 276 aa; transketolase 2209283..2210113 Pectobacterium atrosepticum SCRI1043 2883787 YP_050046.1 CDS ECA1951 NC_004547.2 2210106 2211050 D Similar to Escherichia coli 1-deoxy-D-xylulose 5-phosphate synthase Dxs or b0420 SWALL:DXS_ECOLI (SWALL:P77488) (619 aa) fasta scores: E(): 7.6e-18, 30.24% id in 281 aa, and to Yersinia pestis c-terminal region of transketolase ypo3313 SWALL:Q8ZBT2 (EMBL:AJ414156) (314 aa) fasta scores: E(): 2e-97, 80.19% id in 313 aa; transketolase 2210106..2211050 Pectobacterium atrosepticum SCRI1043 2883788 YP_050047.1 CDS ECA1952 NC_004547.2 2211053 2212543 D Similar to Thermus aquaticus glycerol kinase GlpK SWALL:GLPK_THEAQ (SWALL:Q9WX53) (496 aa) fasta scores: E(): 3.1e-67, 41.63% id in 490 aa, and to Yersinia pestis glycerol kinase ypo3312 or GlpK or y0876 SWALL:Q8ZBT3 (EMBL:AJ414156) (495 aa) fasta scores: E(): 7.5e-143, 70.1% id in 495 aa; glycerol kinase 2211053..2212543 Pectobacterium atrosepticum SCRI1043 2883735 YP_050048.1 CDS ECA1953 NC_004547.2 2212644 2213642 D Similar to Thermus thermophilus xylose isomerase xylA SWALL:XYLA_THETH (SWALL:P26997) (387 aa) fasta scores: E(): 8.9e-12, 26.58% id in 331 aa, and to Thermotoga maritima sugar isomerase tm1071 SWALL:Q9X0G0 (EMBL:AE001767) (383 aa) fasta scores: E(): 4e-10, 25.52% id in 333 aa; xylose isomerase 2212644..2213642 Pectobacterium atrosepticum SCRI1043 2883736 YP_050049.1 CDS ECA1954 NC_004547.2 2213777 2214721 R Similar to Yersinia pestis transcriptional regulatory protein ypo3310 or y0878 SWALL:AAM84462 (EMBL:AJ414156) (314 aa) fasta scores: E(): 6.9e-93, 82.16% id in 314 aa, and to Agrobacterium tumefaciens transcriptional regulator atu1904 or agr_c_3494 SWALL:Q8UE57 (EMBL:AE009144) (319 aa) fasta scores: E(): 1.3e-40, 40.19% id in 316 aa; transcriptional regulator complement(2213777..2214721) Pectobacterium atrosepticum SCRI1043 2883737 YP_050050.1 CDS ECA1955 NC_004547.2 2214906 2215211 D Similar to Escherichia coli, and Shigella flexneri hypothetical protein ycis ycis or b1279 or sf1283 SWALL:AAN42895 (EMBL:AE000226) (102 aa) fasta scores: E(): 7.4e-25, 75.78% id in 95 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein ycis or stm1709 or sty1342 SWALL:Q8XFS5 (EMBL:AE008776) (102 aa) fasta scores: E(): 4.1e-24, 71.71% id in 99 aa; hypothetical protein 2214906..2215211 Pectobacterium atrosepticum SCRI1043 2883726 YP_050051.1 CDS ECA1956 NC_004547.2 2215224 2216393 D Similar to Yersinia pestis hypothetical protein ypo2225 or y2067 SWALL:Q8ZEE7 (EMBL:AJ414151) (389 aa) fasta scores: E(): 1.7e-119, 79.69% id in 389 aa, and to Shigella flexneri heat shock protein ycim or sf1284 SWALL:AAN42896 (EMBL:AE015155) (389 aa) fasta scores: E(): 4.9e-117, 77.31% id in 388 aa; tetratricopeptide repeat protein 2215224..2216393 Pectobacterium atrosepticum SCRI1043 2883727 YP_050052.1 CDS pyrF NC_004547.2 2216576 2217319 D OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2216576..2217319 Pectobacterium atrosepticum SCRI1043 2882678 YP_050053.1 CDS ECA1958 NC_004547.2 2217316 2217645 D involved in start site selection during the initiation of translation; translation initiation factor Sui1 2217316..2217645 Pectobacterium atrosepticum SCRI1043 2883728 YP_050054.1 CDS osmB NC_004547.2 2217826 2218041 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri osmotically inducible lipoprotein B precursor OsmB or b1283 or c1753 or z2523 or ecs1856 or sf1287 SWALL:OSMB_ECOLI (SWALL:P17873) (72 aa) fasta scores: E(): 5.7e-13, 73.52% id in 68 aa; lipoprotein complement(2217826..2218041) Pectobacterium atrosepticum SCRI1043 2882724 YP_050055.1 CDS araD NC_004547.2 2218378 2219073 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 2218378..2219073 Pectobacterium atrosepticum SCRI1043 2884161 YP_050056.1 CDS cstA NC_004547.2 2219248 2221311 R Similar to Escherichia coli carbon starvation protein A CstA or b0598 SWALL:CSTA_ECOLI (SWALL:P15078) (701 aa) fasta scores: E(): 8.8e-164, 60.67% id in 684 aa; carbon starvation protein complement(2219248..2221311) Pectobacterium atrosepticum SCRI1043 2883774 YP_050057.1 CDS ECA1962 NC_004547.2 2221689 2222606 R Similar to Listeria monocytogenes hypothetical protein Lmo0640 SWALL:Q8Y993 (EMBL:AL591976) (305 aa) fasta scores: E(): 4.4e-86, 74.42% id in 305 aa, and to Clostridium acetobutylicum aldo/keto reductase family enzyme cac3378 SWALL:Q97DU3 (EMBL:AE007834) (306 aa) fasta scores: E(): 7.6e-74, 62.86% id in 307 aa; oxidoreductase complement(2221689..2222606) Pectobacterium atrosepticum SCRI1043 2883709 YP_050058.1 CDS rnb NC_004547.2 2222766 2224700 R Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II complement(2222766..2224700) Pectobacterium atrosepticum SCRI1043 2885046 YP_050059.1 CDS ECA1964 NC_004547.2 2225106 2227418 R Similar to Alcaligenes eutrophus CbbbC SWALL:P72261 (EMBL:U60056) (757 aa) fasta scores: E(): 2.9e-139, 50.66% id in 758 aa, and to Pseudomonas putida molybdopterin oxidoreductase, alpha subunit pp0256 SWALL:AAN65887 (EMBL:AE016775) (781 aa) fasta scores: E(): 3e-184, 60% id in 760 aa; molybdopterin oxidoreductase complement(2225106..2227418) Pectobacterium atrosepticum SCRI1043 2883710 YP_050060.1 CDS ECA1965 NC_004547.2 2227588 2228490 D Similar to Pseudomonas aeruginosa probable transcriptional regulator pa5179 SWALL:Q9HU10 (EMBL:AE004931) (293 aa) fasta scores: E(): 4.3e-38, 41.33% id in 300 aa, and to Pseudomonas putida transcriptional regulator, LysR family pp4601 SWALL:AAN70174 (EMBL:AE016791) (295 aa) fasta scores: E(): 2e-34, 37.91% id in 298 aa; LysR family transcriptional regulator 2227588..2228490 Pectobacterium atrosepticum SCRI1043 2883711 YP_050061.1 CDS ECA1966 NC_004547.2 2228481 2229551 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri transcriptional repressor CytR or b3934 or c4887 or z5481 or ecs4861 or sf4012 SWALL:CYTR_ECOLI (SWALL:P06964) (341 aa) fasta scores: E(): 2.1e-16, 25.88% id in 340 aa, and to Yersinia pestis LacI-family regulatory protein ypo0846 or y3231 SWALL:Q8ZHP4 (EMBL:AJ414145) (360 aa) fasta scores: E(): 2.3e-80, 56.66% id in 360 aa; transcriptional repressor complement(2228481..2229551) Pectobacterium atrosepticum SCRI1043 2883712 YP_050062.1 CDS ECA1967 NC_004547.2 2229872 2231182 D Similar to Erwinia chrysanthemi ExuT SWALL:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 2.6e-53, 42.85% id in 329 aa, and to Yersinia pestis sugar transporter ypo0847 or ExuT or y3232 SWALL:AAM86782 (EMBL:AJ414145) (435 aa) fasta scores: E(): 1.2e-142, 77.03% id in 431 aa. Also similar to ECA0644 (44.039% id in 411 aa overlap); hexuronate transporter 2229872..2231182 Pectobacterium atrosepticum SCRI1043 2883668 YP_050063.1 CDS ECA1968 NC_004547.2 2231341 2233707 D Similar to Yersinia pestis glucosidase ypo0848 or y3233 SWALL:Q8ZHP2 (EMBL:AJ414145) (792 aa) fasta scores: E(): 0, 76.27% id in 784 aa, and to Bacillus thermoamyloliquefaciens alpha-glucosidase II SWALL:AGL2_BACTQ (SWALL:Q9F234) (787 aa) fasta scores: E(): 1.5e-66, 27.93% id in 784 aa; glycosyl hydrolase 2231341..2233707 Pectobacterium atrosepticum SCRI1043 2883669 YP_050064.1 CDS ECA1969 NC_004547.2 2234056 2236932 D The C-terminal region of this CDS is similar to Shewanella frigidimarina fumarate reductase flavoprotein subunit precursor FccA or Fcc3 SWALL:FRDA_SHEFR (SWALL:Q02469) (596 aa) fasta scores: E(): 2.7e-64, 43.72% id in 462 aa, and to Staphylococcus epidermidis NADH-dependent flavin oxidoreductase se0195 SWALL:AAO03792 (EMBL:AE016744) (1005 aa) fasta scores: E(): 2.2e-69, 38.82% id in 1007 aa; NADH:flavin oxidoreductase 2234056..2236932 Pectobacterium atrosepticum SCRI1043 2883670 YP_050065.1 CDS ECA1970 NC_004547.2 2237016 2237987 D Similar to Clostridium perfringens thiamin biosynthesis lipoprotein ApbA or cpe2227 SWALL:Q8XI94 (EMBL:AP003193) (342 aa) fasta scores: E(): 6.1e-46, 41.47% id in 311 aa, and to Thermoanaerobacter tengcongensis membrane-associated lipoprotein involved in thiamine biosynthesis apbe or tte2482 SWALL:Q8R7D3 (EMBL:AE013189) (341 aa) fasta scores: E(): 2.4e-42, 44.25% id in 287 aa; thiamine biosynthesis protein 2237016..2237987 Pectobacterium atrosepticum SCRI1043 2883645 YP_050066.1 CDS aidA NC_004547.2 2238073 2238627 R Similar to Ralstonia solanacearum AidA SWALL:O30918 (EMBL:AF021840) (167 aa) fasta scores: E(): 2.2e-11, 32.75% id in 174 aa. Expression of aidA in R. solanacearum is acyl-homoserine lactones dependent.; hypothetical protein complement(2238073..2238627) Pectobacterium atrosepticum SCRI1043 2882964 YP_050067.1 CDS fabI NC_004547.2 2239125 2239913 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase complement(2239125..2239913) Pectobacterium atrosepticum SCRI1043 2883889 YP_050068.1 CDS sapF NC_004547.2 2240066 2240881 R Similar to Erwinia chrysanthemi SapF protein SWALL:O86191 (EMBL:AJ222649) (269 aa) fasta scores: E(): 5.2e-80, 88.8% id in 268 aa, and to Salmonella typhimurium peptide transport system ATP-binding protein SapF or stm1696 SWALL:SAPF_SALTY (SWALL:P36638) (268 aa) fasta scores: E(): 9e-75, 80.89% id in 267 aa; peptide transport system ATP-binding protein complement(2240066..2240881) Pectobacterium atrosepticum SCRI1043 2884430 YP_050069.1 CDS sapD NC_004547.2 2240881 2241873 R Similar to Erwinia chrysanthemi SapD protein SWALL:O86190 (EMBL:AJ222649) (330 aa) fasta scores: E(): 1.6e-113, 86.32% id in 329 aa, and to Salmonella typhimurium peptide transport system ATP-binding protein SapD or stm1695 SWALL:SAPD_SALTY (SWALL:P36636) (330 aa) fasta scores: E(): 6.3e-111, 85.36% id in 328 aa; peptide transport system ATP-binding protein complement(2240881..2241873) Pectobacterium atrosepticum SCRI1043 2884429 YP_050070.1 CDS sapC NC_004547.2 2241890 2242780 R Similar to Erwinia chrysanthemi SapC protein SWALL:O86189 (EMBL:AJ222649) (296 aa) fasta scores: E(): 1.5e-89, 78.37% id in 296 aa, and to Salmonella typhimurium, and Salmonella typhi peptide transport system permease protein SapC or stm1694 or sty1357 SWALL:SAPC_SALTY (SWALL:P36669) (296 aa) fasta scores: E(): 2.5e-87, 75.33% id in 296 aa; peptide transport system permease complement(2241890..2242780) Pectobacterium atrosepticum SCRI1043 2884435 YP_050071.1 CDS sapB NC_004547.2 2242767 2243732 R Similar to Erwinia chrysanthemi SapB protein SWALL:O86188 (EMBL:AJ222649) (313 aa) fasta scores: E(): 2.2e-84, 71.65% id in 321 aa, and to Salmonella typhimurium, and Salmonella typhi peptide transport system permease protein SapB or stm1693 or sty1368 SWALL:SAPB_SALTY (SWALL:P36668) (321 aa) fasta scores: E(): 9.2e-94, 73.2% id in 321 aa; peptide transport system permease complement(2242767..2243732) Pectobacterium atrosepticum SCRI1043 2884434 YP_050072.1 CDS sapA NC_004547.2 2243729 2245417 R Similar to Erwinia chrysanthemi SapA protein SWALL:O86187 (EMBL:AJ222649) (540 aa) fasta scores: E(): 1.5e-178, 80.92% id in 540 aa, and to Salmonella typhimurium peptide transport periplasmic protein SapA precursor or stm1692 SWALL:SAPA_SALTY (SWALL:P36634) (549 aa) fasta scores: E(): 6.1e-161, 71.4% id in 535 aa; peptide transport periplasmic protein complement(2243729..2245417) Pectobacterium atrosepticum SCRI1043 2884433 YP_050073.1 CDS ECA1978 NC_004547.2 2245529 2246458 R Similar to Rhizobium loti probable transcriptional regulator mll2472 SWALL:Q98IC0 (EMBL:AP002999) (298 aa) fasta scores: E(): 3.8e-61, 58.9% id in 292 aa, and to Xanthomonas campestris transcriptional regulator xcc4174 SWALL:Q8P3A2 (EMBL:AE012543) (303 aa) fasta scores: E(): 2.1e-60, 57.14% id in 294 aa; LysR family transcriptional regulator complement(2245529..2246458) Pectobacterium atrosepticum SCRI1043 2883646 YP_050074.1 CDS ECA1979 NC_004547.2 2246565 2247398 D Similar to Rhizobium loti short-chain oxidoreductase mlr2473 SWALL:Q98IB9 (EMBL:AP002999) (276 aa) fasta scores: E(): 4.8e-55, 57.87% id in 273 aa, and to Xanthomonas campestris short chain oxidoreductase xcc4175 SWALL:Q8P3A1 (EMBL:AE012543) (290 aa) fasta scores: E(): 3.6e-51, 54.44% id in 270 aa; short chain dehydrogenase 2246565..2247398 Pectobacterium atrosepticum SCRI1043 2883647 YP_050075.1 CDS celV NC_004547.2 2247874 2249394 D Similar to Erwinia carotovora endoglucanase V precursor CelV SWALL:GUNV_ERWCA (SWALL:Q47096) (505 aa) fasta scores: E(): 9.2e-190, 94.65% id in 505 aa; endoglucanase V 2247874..2249394 Pectobacterium atrosepticum SCRI1043 2882541 YP_050076.1 CDS pspF NC_004547.2 2249463 2250452 R transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator complement(2249463..2250452) Pectobacterium atrosepticum SCRI1043 2882468 YP_050077.1 CDS pspA NC_004547.2 2250678 2251343 D involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 2250678..2251343 Pectobacterium atrosepticum SCRI1043 2881897 YP_050078.1 CDS pspB NC_004547.2 2251445 2251669 D acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 2251445..2251669 Pectobacterium atrosepticum SCRI1043 2881898 YP_050079.1 CDS pspC NC_004547.2 2251669 2252034 D with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC 2251669..2252034 Pectobacterium atrosepticum SCRI1043 2881899 YP_050080.1 CDS ECA1986 NC_004547.2 2252210 2253607 D Similar to Yersinia enterocolitica hypothetical 52.6 kDa protein ycjX SWALL:Q9F4H0 (EMBL:AY008264) (465 aa) fasta scores: E(): 4.4e-166, 81.93% id in 465 aa, and to Escherichia coli hypothetical protein ycjx or b1321 SWALL:YCJX_ECOLI (SWALL:P76046) (465 aa) fasta scores: E(): 1.1e-154, 76.34% id in 465 aa; hypothetical protein 2252210..2253607 Pectobacterium atrosepticum SCRI1043 2883639 YP_050081.1 CDS ECA1987 NC_004547.2 2253604 2254647 D Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein ycjf or b1322 or c1794 SWALL:YCJF_ECOLI (SWALL:P45525) (353 aa) fasta scores: E(): 1.2e-102, 75.28% id in 348 aa, and to Shigella flexneri orf, conserved hypothetical protein ycjf or sf1328 SWALL:AAN42934 (EMBL:AE015159) (353 aa) fasta scores: E(): 1.5e-102, 75% id in 348 aa; hypothetical protein 2253604..2254647 Pectobacterium atrosepticum SCRI1043 2883640 YP_050082.1 CDS ECA1988 NC_004547.2 2254805 2256349 D Similar to Deinococcus radiodurans arge/dape/acy1 family protein dr2025 SWALL:Q9RSU7 (EMBL:AE002039) (459 aa) fasta scores: E(): 3.4e-22, 29.93% id in 471 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1111 SWALL:BAC13067 (EMBL:AP004596) (453 aa) fasta scores: E(): 8.2e-21, 29.91% id in 478 aa; peptidase 2254805..2256349 Pectobacterium atrosepticum SCRI1043 2883641 YP_050083.1 CDS tyrR NC_004547.2 2256486 2258054 D regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 2256486..2258054 Pectobacterium atrosepticum SCRI1043 2884220 YP_050084.1 CDS tpx NC_004547.2 2258122 2258625 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(2258122..2258625) Pectobacterium atrosepticum SCRI1043 2884253 YP_050085.1 CDS ECA1991 NC_004547.2 2258705 2259424 R Similar to Yersinia pestis hypothetical protein ypo2340 or y1992 SWALL:Q8ZE44 (EMBL:AJ414152) (256 aa) fasta scores: E(): 5.7e-69, 73.93% id in 234 aa, and to Shigella dysenteriae YcjI SWALL:Q9LA26 (EMBL:AF153317) (262 aa) fasta scores: E(): 1.4e-67, 70.08% id in 234 aa; murein peptide amidase A complement(2258705..2259424) Pectobacterium atrosepticum SCRI1043 2883633 YP_050086.1 CDS mppA NC_004547.2 2259590 2261206 D Similar to Escherichia coli periplasmic murein peptide-binding protein precursor MppA or b1329 SWALL:MPPA_ECOLI (SWALL:P77348) (537 aa) fasta scores: E(): 1.5e-156, 72.11% id in 538 aa; periplasmic murein peptide-binding protein 2259590..2261206 Pectobacterium atrosepticum SCRI1043 2881696 YP_050087.1 CDS zntB NC_004547.2 2261346 2262329 D Similar to Salmonella typhimurium zinc transport protein ZntB or stm1656 SWALL:Q9EYX5 (EMBL:AF308568) (327 aa) fasta scores: E(): 2.3e-86, 63.3% id in 327 aa, and to Yersinia pestis hypothetical protein y1994 SWALL:AAM85560 (EMBL:AE013802) (337 aa) fasta scores: E(): 8.6e-94, 72.36% id in 322 aa; zinc transporter 2261346..2262329 Pectobacterium atrosepticum SCRI1043 2882472 YP_050088.1 CDS ECA1994 NC_004547.2 2262768 2262941 D no significant database matches; hypothetical protein 2262768..2262941 Pectobacterium atrosepticum SCRI1043 2883634 YP_050089.1 CDS ECA1995 NC_004547.2 2263058 2263993 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(2263058..2263993) Pectobacterium atrosepticum SCRI1043 2883635 YP_050090.1 CDS col NC_004547.2 2264211 2264807 D Similar to Escherichia coli colicin E5 Col SWALL:CEA5_ECOLI (SWALL:P18000) (180 aa) fasta scores: E(): 4.3e-29, 63.5% id in 137 aa, and to Pseudomonas aeruginosa pyocin protein pa3866 SWALL:Q9HXE0 (EMBL:AE004804) (764 aa) fasta scores: E(): 5e-13, 58.06% id in 93 aa; colicin 2264211..2264807 Pectobacterium atrosepticum SCRI1043 2884954 YP_050091.1 CDS imm NC_004547.2 2264869 2265129 D Similar to Escherichia coli colicin E5 Immunity protein Imm SWALL:IMM5_ECOLI (SWALL:P13476) (83 aa) fasta scores: E(): 2.5e-13, 58.53% id in 82 aa; colicin immunity protein 2264869..2265129 Pectobacterium atrosepticum SCRI1043 2881755 YP_050092.1 CDS ECA1998 NC_004547.2 2265486 2265758 R Similar to Vibrio cholerae hypothetical protein Vca0935 SWALL:Q9KL14 (EMBL:AE004420) (118 aa) fasta scores: E(): 1.3e-08, 37.5% id in 88 aa, and to Streptococcus pneumoniae conserved hypothetical protein spr0927 SWALL:AAK99731 (EMBL:AE008465) (156 aa) fasta scores: E(): 7, 32.53% id in 83 aa; hypothetical protein complement(2265486..2265758) Pectobacterium atrosepticum SCRI1043 2883582 YP_050093.1 CDS ECA1999 NC_004547.2 2266317 2266607 D Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein ydbj precursor ydbj or b1378.1 or c1825 SWALL:YDBJ_ECOLI (SWALL:P52646) (88 aa) fasta scores: E(): 3e-09, 43.61% id in 94 aa, and to Yersinia pestis lipoprotein ypo2331 SWALL:Q8ZE53 (EMBL:AJ414152) (113 aa) fasta scores: E(): 1.6e-06, 34.51% id in 113 aa; lipoprotein 2266317..2266607 Pectobacterium atrosepticum SCRI1043 2883583 YP_050094.1 CDS ldhA NC_004547.2 2266640 2267632 R Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase complement(2266640..2267632) Pectobacterium atrosepticum SCRI1043 2883631 YP_050095.1 CDS aer1 NC_004547.2 2267752 2269305 R Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 9.2e-69, 40.31% id in 501 aa. Also similar to ECA2002 (64.808% id in 520 aa overlap); aerotaxis receptor complement(2267752..2269305) Pectobacterium atrosepticum SCRI1043 2883245 YP_050096.1 CDS aer2 NC_004547.2 2269650 2271203 R Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 1.7e-71, 41.82% id in 514 aa. Also similar to ECA2001 (64.808% id in 520 aa overlap); aerotaxis receptor complement(2269650..2271203) Pectobacterium atrosepticum SCRI1043 2883246 YP_050097.1 CDS ECA2003 NC_004547.2 2271577 2274168 D Similar to Yersinia pestis hypothetical protein y2005 SWALL:AAM85571 (EMBL:AE013803) (898 aa) fasta scores: E(): 1e-188, 52.6% id in 865 aa, and to Escherichia coli O6 hypothetical protein ydbh or c1828 SWALL:AAN80292 (EMBL:AE016760) (879 aa) fasta scores: E(): 2.9e-148, 44.01% id in 861 aa; hypothetical protein 2271577..2274168 Pectobacterium atrosepticum SCRI1043 2883584 YP_050098.1 CDS ECA2004 NC_004547.2 2274184 2274414 D Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ynbe or b1382 or c1829 or sf1816 SWALL:YNBE_ECOLI (SWALL:P76075) (61 aa) fasta scores: E(): 2.7e-10, 73.21% id in 56 aa, and to Salmonella typhimurium, and Salmonella typhi outer membrane lipoprotein ynbe or stm1645 or sty1424 SWALL:Q8XEM6 (EMBL:AE008772) (63 aa) fasta scores: E(): 1.5e-09, 60.65% id in 61 aa; lipoprotein 2274184..2274414 Pectobacterium atrosepticum SCRI1043 2883585 YP_050099.1 CDS acpD NC_004547.2 2274685 2275290 R FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase complement(2274685..2275290) Pectobacterium atrosepticum SCRI1043 2884760 YP_050100.2 CDS ECA2006 NC_004547.2 2275654 2279496 D involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 2275654..2279496 Pectobacterium atrosepticum SCRI1043 2883520 YP_050101.1 CDS ECA2007 NC_004547.2 2279511 2280350 R Similar to Pseudomonas aeruginosa staphylolytic protease preproenzyme LasA pa1872 SWALL:P72166 (EMBL:U68175) (263 aa) fasta scores: E(): 1.4e-21, 43.6% id in 266 aa, and to Xanthomonas axonopodis hypothetical protein Xac0112 SWALL:Q8PR54 (EMBL:AE011634) (263 aa) fasta scores: E(): 5.6e-20, 43.89% id in 262 aa; protease complement(2279511..2280350) Pectobacterium atrosepticum SCRI1043 2883521 YP_050102.1 CDS ECA2008 NC_004547.2 2280396 2282174 R Similar to Pseudomonas aeruginosa hypothetical protein Pa2567 SWALL:Q9I0R8 (EMBL:AE004685) (587 aa) fasta scores: E(): 1.7e-61, 32.99% id in 582 aa, and to Xanthomonas campestris hypothetical protein Xcc1777 SWALL:Q8P9S1 (EMBL:AE012279) (618 aa) fasta scores: E(): 2e-57, 32.88% id in 590 aa; signaling protein complement(2280396..2282174) Pectobacterium atrosepticum SCRI1043 2883522 YP_050103.1 CDS ECA2009 NC_004547.2 2282647 2283504 R Similar to Shigella flexneri orf, conserved hypothetical protein sf1619 SWALL:AAN43202 (EMBL:AE015183) (273 aa) fasta scores: E(): 1.1e-59, 57.35% id in 272 aa, and to Escherichia coli protease ydgd precursor ydgd or b1598 SWALL:YDGD_ECOLI (SWALL:P76176) (273 aa) fasta scores: E(): 1.8e-59, 57.35% id in 272 aa; exported protease complement(2282647..2283504) Pectobacterium atrosepticum SCRI1043 2883517 YP_050104.1 CDS ECA2010 NC_004547.2 2283756 2284052 R Similar to Escherichia coli O157:H7 hypothetical protein z1678 or ecs1422 SWALL:Q8X5A9 (EMBL:AE005315) (103 aa) fasta scores: E(): 0.0022, 28.12% id in 96 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1040 SWALL:AAN42662 (EMBL:AE015132) (103 aa) fasta scores: E(): 0.0031, 27.08% id in 96 aa; hypothetical protein complement(2283756..2284052) Pectobacterium atrosepticum SCRI1043 2883518 YP_050105.2 CDS asr NC_004547.2 2284549 2284911 R required for growth and survival under moderately acid conditions; acid shock protein complement(2284549..2284911) Pectobacterium atrosepticum SCRI1043 2882889 YP_050106.1 CDS rstB NC_004547.2 2285092 2286405 R Similar to Escherichia coli sensor protein RstB or UspT or b1609 SWALL:RSTB_ECOLI (SWALL:P18392) (433 aa) fasta scores: E(): 3.4e-113, 66.5% id in 424 aa; sensor protein RstB complement(2285092..2286405) Pectobacterium atrosepticum SCRI1043 2884448 YP_050107.1 CDS rstA NC_004547.2 2286402 2287139 R response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA complement(2286402..2287139) Pectobacterium atrosepticum SCRI1043 2884447 YP_050108.1 CDS ECA2014 NC_004547.2 2287361 2288560 D Similar to Listeria monocytogenes hypothetical protein Lmo1135 SWALL:Q8Y7Y4 (EMBL:AL591978) (383 aa) fasta scores: E(): 0.00071, 21.26% id in 395 aa; hypothetical protein 2287361..2288560 Pectobacterium atrosepticum SCRI1043 2883519 YP_050109.1 CDS ECA2015 NC_004547.2 2288706 2289281 D Similar to Xanthomonas axonopodis hypothetical protein Xac3032 SWALL:Q8PI66 (EMBL:AE011945) (220 aa) fasta scores: E(): 3.7e-08, 25.78% id in 190 aa, and to Xylella fastidiosa hypothetical protein Xf1840 SWALL:Q9PCE1 (EMBL:AE004005) (237 aa) fasta scores: E(): 6.4e-13, 29.89% id in 194 aa; hypothetical protein 2288706..2289281 Pectobacterium atrosepticum SCRI1043 2883497 YP_050110.1 CDS ECA2016 NC_004547.2 2289333 2290136 R Similar to Rhizobium loti hypothetical protein Mlr7774 SWALL:Q984Z9 (EMBL:AP003012) (263 aa) fasta scores: E(): 7.7e-06, 25.4% id in 248 aa; hypothetical protein complement(2289333..2290136) Pectobacterium atrosepticum SCRI1043 2883498 YP_050111.1 CDS ECA2017 NC_004547.2 2290133 2290600 R Similar to Bradyrhizobium japonicum ECF sigma factor EcfA or bll6484 SWALL:BAC51749 (EMBL:AJ304855) (172 aa) fasta scores: E(): 2.1e-13, 36.66% id in 150 aa, and to Thiobacillus novellus RNA polymerase sigma factor SigE SWALL:Q9LA18 (EMBL:AF154565) (172 aa) fasta scores: E(): 1.8e-09, 34.26% id in 143 aa; RNA polymerase sigma factor complement(2290133..2290600) Pectobacterium atrosepticum SCRI1043 2883499 YP_050112.1 CDS ECA2018 NC_004547.2 2290679 2291401 R Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical oxidoreductase ydgb or b1606 or z2606 or ecs2312 SWALL:YDGB_ECOLI (SWALL:P52109) (240 aa) fasta scores: E(): 8.5e-56, 66.09% id in 233 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase pa3437 SWALL:Q9HYG9 (EMBL:AE004764) (234 aa) fasta scores: E(): 7.6e-36, 47.08% id in 240 aa; short chain dehydrogenase complement(2290679..2291401) Pectobacterium atrosepticum SCRI1043 2883491 YP_050113.1 CDS ECA2019 NC_004547.2 2291856 2294414 D no significant database matches; hypothetical protein 2291856..2294414 Pectobacterium atrosepticum SCRI1043 2883492 YP_050114.1 CDS ECA2020 NC_004547.2 2294424 2297000 D no significant database matches; hypothetical protein 2294424..2297000 Pectobacterium atrosepticum SCRI1043 2883493 YP_050115.1 CDS ECA2021 NC_004547.2 2297113 2298807 R role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM complement(2297113..2298807) Pectobacterium atrosepticum SCRI1043 2883428 YP_050116.1 CDS chaA NC_004547.2 2298971 2300071 R Similar to Escherichia coli calcium/proton antiporter ChaA or b1216 SWALL:CHAA_ECOLI (SWALL:P31801) (366 aa) fasta scores: E(): 1.8e-109, 78.57% id in 364 aa; calcium/sodium:proton antiporter complement(2298971..2300071) Pectobacterium atrosepticum SCRI1043 2884596 YP_050117.1 CDS ECA2022A NC_004547.2 2300086 2300208 R Similar to Paramecium primaurelia g surface antigen gene, 5' end SWALL:AAA29444 (EMBL:M11194) (48 aa) fasta scores: E(): 7.5, 37.2% id in 43 aa; surface antigen protein complement(2300086..2300208) Pectobacterium atrosepticum SCRI1043 2883429 YP_050118.1 CDS ECA2023 NC_004547.2 2300401 2301204 R Similar to Vibrio vulnificus vulnibactin utilization protein ViuB or vv20837 SWALL:AAO07760 (EMBL:U32676) (271 aa) fasta scores: E(): 1.2e-26, 34.48% id in 261 aa, and to Stigmatella aurantiaca MxcB mxcB SWALL:Q9F641 (EMBL:AF299336) (270 aa) fasta scores: E(): 2.1e-21, 33.84% id in 260 aa; siderophore-interacting protein complement(2300401..2301204) Pectobacterium atrosepticum SCRI1043 2883430 YP_050119.1 CDS ECA2024 NC_004547.2 2301475 2301606 D Doubtful CDS. No significant database matches; hypothetical protein 2301475..2301606 Pectobacterium atrosepticum SCRI1043 2883431 YP_050120.1 CDS chaC NC_004547.2 2301922 2302608 D Similar to Escherichia coli cation transport protein ChaC or b1218 SWALL:CHAC_ECOLI (SWALL:P39163) (231 aa) fasta scores: E(): 3.3e-55, 60.18% id in 216 aa; cation transport protein 2301922..2302608 Pectobacterium atrosepticum SCRI1043 2884597 YP_050121.1 CDS ECA2026 NC_004547.2 2302683 2303732 R Similar to Pseudomonas aeruginosa hypothetical protein Pa4390 SWALL:Q9HW14 (EMBL:AE004854) (335 aa) fasta scores: E(): 2.8e-59, 43.23% id in 340 aa, and to Pseudomonas putida conserved hypothetical protein pp1357 SWALL:AAN66980 (EMBL:AE016779) (375 aa) fasta scores: E(): 6.3e-60, 44.97% id in 338 aa; hypothetical protein complement(2302683..2303732) Pectobacterium atrosepticum SCRI1043 2883425 YP_050122.1 CDS ECA2027 NC_004547.2 2304023 2305297 R Similar to Pseudomonas aeruginosa hypothetical protein Pa4338 SWALL:Q9HW63 (EMBL:AE004850) (426 aa) fasta scores: E(): 4.1e-97, 57.42% id in 411 aa, and to Bacteroides thetaiotaomicron acyltransferase bt1546 SWALL:AAO76653 (EMBL:AE016932) (335 aa) fasta scores: E(): 2.4e-05, 28.27% id in 237 aa; acyltransferase complement(2304023..2305297) Pectobacterium atrosepticum SCRI1043 2883426 YP_050123.1 CDS narL NC_004547.2 2305560 2306210 R two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL complement(2305560..2306210) Pectobacterium atrosepticum SCRI1043 2883992 YP_050124.1 CDS narX NC_004547.2 2306203 2308011 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri nitrate/nitrite sensor protein NarX or NarR or b1222 or z1998 or ecs1727 or sf1225 SWALL:NARX_ECOLI (SWALL:P10956) (598 aa) fasta scores: E(): 1.5e-115, 54.06% id in 603 aa; nitrate/nitrite sensor protein NarX complement(2306203..2308011) Pectobacterium atrosepticum SCRI1043 2883598 YP_050125.1 CDS narK NC_004547.2 2308348 2309736 D Similar to Escherichia coli nitrite extrusion protein 1 NarK or b1223 SWALL:NARK_ECOLI (SWALL:P10903) (463 aa) fasta scores: E(): 3.6e-131, 71.08% id in 460 aa; nitrite extrusion protein 2308348..2309736 Pectobacterium atrosepticum SCRI1043 2883991 YP_050126.1 CDS narG NC_004547.2 2310451 2314227 D Similar to Escherichia coli respiratory nitrate reductase 1 alpha chain NarG or NarC or BisD or b1224 SWALL:NARG_ECOLI (SWALL:P09152) (1246 aa) fasta scores: E(): 0, 83.77% id in 1245 aa; respiratory nitrate reductase 1 subunit alpha 2310451..2314227 Pectobacterium atrosepticum SCRI1043 2883995 YP_050127.1 CDS narH NC_004547.2 2314227 2315807 D Similar to Escherichia coli respiratory nitrate reductase 1 beta chain NarH or b1225 SWALL:NARH_ECOLI (SWALL:P11349) (512 aa) fasta scores: E(): 6.2e-178, 86.74% id in 513 aa; respiratory nitrate reductase 1 subunit beta 2314227..2315807 Pectobacterium atrosepticum SCRI1043 2883996 YP_050128.1 CDS narJ NC_004547.2 2315800 2316519 D Similar to Escherichia coli, and Escherichia coli O157:H7 respiratory nitrate reductase 1 delta chain NarJ or b1226 or z2003 or ecs1731 SWALL:NARJ_ECOLI (SWALL:P11351) (236 aa) fasta scores: E(): 8.1e-56, 62.18% id in 238 aa; respiratory nitrate reductase 1 subunit delta 2315800..2316519 Pectobacterium atrosepticum SCRI1043 2883990 YP_050129.1 CDS narI NC_004547.2 2316519 2317223 D Similar to Escherichia coli respiratory nitrate reductase 1 gamma chain NarI or ChlI or b1227 SWALL:NARI_ECOLI (SWALL:P11350) (225 aa) fasta scores: E(): 5.6e-71, 77.67% id in 224 aa; respiratory nitrate reductase 1 subunit gamma 2316519..2317223 Pectobacterium atrosepticum SCRI1043 2883997 YP_050130.1 CDS pecM NC_004547.2 2317324 2318196 R Similar to Erwinia chrysanthemi PecM protein SWALL:PECM_ERWCH (SWALL:P42194) (297 aa) fasta scores: E(): 4e-39, 42.75% id in 276 aa; regulatory protein complement(2317324..2318196) Pectobacterium atrosepticum SCRI1043 2882176 YP_050131.1 CDS pecS NC_004547.2 2318259 2318798 D Similar to Erwinia chrysanthemi regulatory protein PecS SWALL:PECS_ERWCH (SWALL:P42195) (166 aa) fasta scores: E(): 5.5e-25, 48.76% id in 162 aa; regulatory protein 2318259..2318798 Pectobacterium atrosepticum SCRI1043 2882177 YP_050132.1 CDS ECA2037 NC_004547.2 2318802 2319278 D Similar to Vibrio cholerae hypothetical protein Vca0330 SWALL:Q9KMK9 (EMBL:AE004371) (162 aa) fasta scores: E(): 1.2e-32, 56.57% id in 152 aa, and to Vibrio vulnificus predicted redox protein vv12348 SWALL:AAO10722 (EMBL:AE016804) (153 aa) fasta scores: E(): 1e-30, 53.94% id in 152 aa; OsmC-like protein 2318802..2319278 Pectobacterium atrosepticum SCRI1043 2883427 YP_050133.1 CDS ECA2038 NC_004547.2 2319365 2320507 R Similar to Agrobacterium tumefaciens hypothetical protein atu3948 or agr_l_1808 SWALL:Q8U8Z0 (EMBL:AE009325) (397 aa) fasta scores: E(): 2.3e-76, 51.96% id in 381 aa, and to Ralstonia solanacearum hypothetical protein rsc2709 or rs00013 SWALL:Q8XVW8 (EMBL:AL646071) (376 aa) fasta scores: E(): 1.1e-66, 48.8% id in 375 aa; hypothetical protein complement(2319365..2320507) Pectobacterium atrosepticum SCRI1043 2883399 YP_050134.1 CDS ECA2039 NC_004547.2 2320504 2321445 R Similar to Agrobacterium tumefaciens ornithine cyclodeaminase ArcB or Ocd SWALL:OCD_AGRT4 (SWALL:Q59701) (356 aa) fasta scores: E(): 5.7e-15, 27.42% id in 299 aa, and to Rhizobium meliloti ornithine cyclodeaminase 1 Ocd1 or rb0419 or smb20433 SWALL:OCD1_RHIME (SWALL:P58338) (329 aa) fasta scores: E(): 1.6e-25, 35.49% id in 324 aa; ornithine cyclodeaminase complement(2320504..2321445) Pectobacterium atrosepticum SCRI1043 2883400 YP_050135.1 CDS ECA2040 NC_004547.2 2321456 2322430 R catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine; serine/threonine dehydratase complement(2321456..2322430) Pectobacterium atrosepticum SCRI1043 2883401 YP_050136.1 CDS ECA2041 NC_004547.2 2322658 2323281 D Similar to Bradyrhizobium japonicum Bll7235 protein SWALL:BAC52500 (EMBL:AP005961) (219 aa) fasta scores: E(): 5.9e-45, 62.5% id in 200 aa, and to Ralstonia solanacearum hypothetical protein rsp1517 or rs04794 SWALL:Q8XPW9 (EMBL:AL646085) (214 aa) fasta scores: E(): 4.9e-34, 49.01% id in 202 aa; DNA-binding protein 2322658..2323281 Pectobacterium atrosepticum SCRI1043 2883293 YP_050137.1 CDS ECA2042 NC_004547.2 2323396 2323677 R no significant database matches; hypothetical protein complement(2323396..2323677) Pectobacterium atrosepticum SCRI1043 2883294 YP_050138.1 CDS ECA2043 NC_004547.2 2323655 2324143 R no significant database matches; hypothetical protein complement(2323655..2324143) Pectobacterium atrosepticum SCRI1043 2883295 YP_050139.1 CDS ECA2044 NC_004547.2 2324296 2324544 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yeaq or b1795 or c2200 or z2837 or ecs2504 SWALL:YEAQ_ECOLI (SWALL:P76246) (82 aa) fasta scores: E(): 5.4e-25, 85.18% id in 81 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 membrane protein SWALL:AAO68813 (EMBL:AE016838) (82 aa) fasta scores: E(): 9.8e-25, 83.95% id in 81 aa; hypothetical protein 2324296..2324544 Pectobacterium atrosepticum SCRI1043 2883249 YP_050140.1 CDS ECA2045 NC_004547.2 2324722 2325750 R Similar to Streptomyces glaucescens StrP protein SWALL:Q54262 (EMBL:X78974) (358 aa) fasta scores: E(): 8.5e-33, 35.98% id in 339 aa, and to Agrobacterium tumefaciens udp-glucose 4-epimerase gale or atu4801 or agr_l_161 SWALL:Q8U6K6 (EMBL:AE009408) (378 aa) fasta scores: E(): 3.2e-31, 33.81% id in 343 aa; NAD dependent epimerase/dehydratase complement(2324722..2325750) Pectobacterium atrosepticum SCRI1043 2883250 YP_050141.1 CDS ECA2046 NC_004547.2 2325747 2328827 R Its N-terminal half is similar to several aminotransferases including Escherichia coli VioA SWALL:Q9XCW4 (EMBL:AF125322) (371 aa) fasta scores: E(): 1.6e-29, 32.31% id in 359 aa, and to Streptomyces globisporus amino transferase SWALL:AAL06659 (EMBL:AY048670) (410 aa) fasta scores: E(): 9.5e-29, 32.32% id in 396 aa. Its C-terminal half is similar to many chitin synthases such as Saprolegnia monoica chitin synthase chS SWALL:CHS_SAPMO (SWALL:P48017) (886 aa) fasta scores: E(): 6.2e-20, 24% id in 525 aa, and to Emericella nidulans chitin synthase a chsa or chs2 SWALL:CHSA_EMENI (SWALL:P30584) (1013 aa) fasta scores: E(): 5.3e-19, 24.18% id in 550 aa; Similar to Saprolegnia monoica chitin synthase chS SWALL:CHS_SAPMO (SWALL:P48017) (886 aa) fasta scores: E(): 6.2e-20, 24% id in 525 aa, and to Emericella nidulans chitin synthase a chsa or chs2 SWALL:CHSA_EMENI (SWALL:P30584) (1013 aa) fasta scores: E(): 5.3e-19, 24.18% id in 550 aa; bifunctional enzyme including aminotransferase and chitin synthase complement(2325747..2328827) Pectobacterium atrosepticum SCRI1043 2883251 YP_050142.1 CDS ECA2047 NC_004547.2 2328861 2330060 R Similar to Ralstonia solanacearum hypothetical protein rsc1651 or rs04028 SWALL:Q8XYV5 (EMBL:AL646065) (394 aa) fasta scores: E(): 5.6e-36, 34.18% id in 392 aa, and to Caulobacter crescentus hypothetical protein Cc1979 SWALL:Q9A6V4 (EMBL:AE005871) (407 aa) fasta scores: E(): 1.3e-16, 25.77% id in 388 aa; hypothetical protein complement(2328861..2330060) Pectobacterium atrosepticum SCRI1043 2883149 YP_050143.1 CDS ECA2048 NC_004547.2 2330077 2332041 R Similar to Ralstonia solanacearum probable signal peptide protein rsc1650 or rs04027 SWALL:Q8XYV6 (EMBL:AL646065) (538 aa) fasta scores: E(): 1.4e-41, 34.04% id in 376 aa, and to Rhizobium loti hypothetical protein Mll5453 SWALL:Q98BS0 (EMBL:AP003006) (508 aa) fasta scores: E(): 1.6e-09, 25.22% id in 452 aa; hypothetical protein complement(2330077..2332041) Pectobacterium atrosepticum SCRI1043 2883150 YP_050144.1 CDS ECA2049 NC_004547.2 2332156 2332908 R Similar to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62203 (EMBL:AF440523) (248 aa) fasta scores: E(): 1.8e-29, 40.67% id in 236 aa, and to Xylella fastidiosa hypothetical protein Xf1787 SWALL:Q9PCJ2 (EMBL:AE004000) (251 aa) fasta scores: E(): 3.3e-29, 38% id in 250 aa; hypothetical protein complement(2332156..2332908) Pectobacterium atrosepticum SCRI1043 2883151 YP_050145.1 CDS ECA2050 NC_004547.2 2333299 2333916 R Similar to Vibrio vulnificus threonine efflux protein vv12697 SWALL:AAO11043 (EMBL:AE016806) (211 aa) fasta scores: E(): 2.3e-12, 30.73% id in 205 aa, and to Vibrio cholerae hypothetical protein Vc1421 SWALL:Q9KS40 (EMBL:AE004221) (212 aa) fasta scores: E(): 1.3e-09, 25.51% id in 196 aa; hypothetical protein complement(2333299..2333916) Pectobacterium atrosepticum SCRI1043 2883152 YP_050146.1 CDS ECA2051 NC_004547.2 2334054 2335148 R Similar to Yersinia pestis putitive ABC-transporter ATP-binding protein ypo2846 SWALL:Q8ZCW2 (EMBL:AJ414154) (361 aa) fasta scores: E(): 7.7e-108, 79.67% id in 364 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa0603 SWALL:Q9I5T5 (EMBL:AE004496) (369 aa) fasta scores: E(): 3.7e-81, 63.3% id in 357 aa; ABC transporter ATP-binding protein complement(2334054..2335148) Pectobacterium atrosepticum SCRI1043 2882929 YP_050147.1 CDS ECA2052 NC_004547.2 2335354 2336847 R Similar to Yersinia pestis GntR-family regulatory protein ypo2845 or y1389 SWALL:AAM84961 (EMBL:AJ414154) (501 aa) fasta scores: E(): 2.9e-125, 62.92% id in 499 aa, and to Rhizobium meliloti probable rhizopine catabolism regulatory protein MocR SWALL:MOCR_RHIME (SWALL:P49309) (493 aa) fasta scores: E(): 6.7e-70, 40.98% id in 488 aa; GntR family transcriptional regulator complement(2335354..2336847) Pectobacterium atrosepticum SCRI1043 2882930 YP_050148.1 CDS gabT NC_004547.2 2336995 2338260 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2336995..2338260 Pectobacterium atrosepticum SCRI1043 2883163 YP_050149.1 CDS gabD NC_004547.2 2338271 2339743 D Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 6e-122, 65.76% id in 482 aa; succinate-semialdehyde dehydrogenase 2338271..2339743 Pectobacterium atrosepticum SCRI1043 2883273 YP_050150.1 CDS ECA2055 NC_004547.2 2340110 2341189 D Similar to Pseudomonas putida polyamine ABC transporter, periplasmic polyamine-binding protein pp0412 SWALL:AAN66042 (EMBL:AE016775) (344 aa) fasta scores: E(): 4.2e-81, 57.84% id in 344 aa, and to Yersinia pestis transport system periplasmic protein ypo2843 or y1391 SWALL:Q8ZCW5 (EMBL:AJ414154) (342 aa) fasta scores: E(): 5e-103, 71.84% id in 341 aa; transport system, periplasmic solute-binding protein 2340110..2341189 Pectobacterium atrosepticum SCRI1043 2882931 YP_050151.1 CDS ECA2056 NC_004547.2 2341232 2342500 D Similar to Yersinia pestis ABC transporter permease ypo2842 SWALL:Q8ZCW6 (EMBL:AJ414154) (421 aa) fasta scores: E(): 2.8e-118, 72.4% id in 424 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter pa0605 SWALL:Q9I5T3 (EMBL:AE004497) (415 aa) fasta scores: E(): 4.5e-85, 54.47% id in 402 aa; transport system, permease 2341232..2342500 Pectobacterium atrosepticum SCRI1043 2882813 YP_050152.1 CDS ECA2057 NC_004547.2 2342538 2343356 D Similar to Yersinia pestis ABC transporter permease ypo2841 SWALL:Q8ZCW7 (EMBL:AJ414154) (282 aa) fasta scores: E(): 4.6e-83, 83.64% id in 269 aa, and to Pseudomonas putida polyamine ABC transporter, permease protein pp0414 SWALL:AAN66044 (EMBL:AE016775) (275 aa) fasta scores: E(): 3.4e-63, 65.13% id in 261 aa; transport system, permease 2342538..2343356 Pectobacterium atrosepticum SCRI1043 2882814 YP_050153.1 CDS ECA2058 NC_004547.2 2343795 2344529 D Similar to Pseudomonas aeruginosa probable short-chain dehydrogenase pa5150 SWALL:Q9HU34 (EMBL:AE004928) (245 aa) fasta scores: E(): 1.2e-79, 82.04% id in 245 aa, and to Bradyrhizobium japonicum short-chain alcohol dehydrogenase FixR or bll2623 SWALL:BAC47888 (EMBL:AP005944) (250 aa) fasta scores: E(): 2.1e-59, 64.05% id in 242 aa; short-chain dehydrogenase 2343795..2344529 Pectobacterium atrosepticum SCRI1043 2882815 YP_050154.1 CDS ECA2059 NC_004547.2 2344522 2345646 D Similar to Methylobacillus flagellatum homoserine kinase ThrB SWALL:KHSE_METFL (SWALL:Q9RAM6) (319 aa) fasta scores: E(): 6.1e-06, 28.8% id in 302 aa, and to Rhizobium loti homoserine kinase mlr7168 SWALL:Q986X7 (EMBL:AP003011) (364 aa) fasta scores: E(): 7e-40, 39.21% id in 329 aa; phosphotransferase 2344522..2345646 Pectobacterium atrosepticum SCRI1043 2882302 YP_050155.1 CDS ECA2060 NC_004547.2 2345658 2346944 D Similar to Rhizobium meliloti aminotransferase ra0973 or sma1761 SWALL:Q92YB1 (EMBL:AE007283) (438 aa) fasta scores: E(): 7.6e-92, 58.13% id in 418 aa, and to Agrobacterium tumefaciens pyridoxal phosphate aminotransferase atu5251 or agr_pat_358 SWALL:Q8UK72 (EMBL:AE008947) (464 aa) fasta scores: E(): 3.4e-74, 51.09% id in 411 aa; class-III aminotransferase 2345658..2346944 Pectobacterium atrosepticum SCRI1043 2882303 YP_050156.1 CDS ECA2061 NC_004547.2 2346979 2348505 R Similar to Salmonella typhimurium methyl-accepting chemotaxis citrate transducer Tcp or stm3577 SWALL:MCPC_SALTY (SWALL:Q02755) (547 aa) fasta scores: E(): 1.2e-52, 42.21% id in 514 aa, and to Ralstonia solanacearum probable methyl-accepting chemotaxis I CheD3 or rsp1406 or rs02052 SWALL:Q8XQ80 (EMBL:AL646084) (608 aa) fasta scores: E(): 8.4e-59, 45.31% id in 512 aa; methyl-accepting chemotaxis protein complement(2346979..2348505) Pectobacterium atrosepticum SCRI1043 2882304 YP_050157.1 CDS ECA2062 NC_004547.2 2348945 2350252 R Similar to Salmonella typhimurium phosphatase stm3595 SWALL:Q8ZLD5 (EMBL:AE008866) (423 aa) fasta scores: E(): 2.3e-84, 55.37% id in 437 aa; phosphatase complement(2348945..2350252) Pectobacterium atrosepticum SCRI1043 2882254 YP_050158.1 CDS ECA2063 NC_004547.2 2350811 2351833 D Similar to Escherichia coli D-methionine transport ATP-binding protein MetN or Abc or b0199 SWALL:METN_ECOLI (SWALL:P30750) (343 aa) fasta scores: E(): 3.3e-48, 42.89% id in 345 aa, and to Salmonella typhimurium ABC-type transport system ATPase component/cell division protein SfbB or stm0511 SWALL:Q8ZR89 (EMBL:AE008719) (338 aa) fasta scores: E(): 1.2e-77, 65.97% id in 338 aa; ABC transporter ATP-binding protein 2350811..2351833 Pectobacterium atrosepticum SCRI1043 2882255 YP_050159.1 CDS ECA2064 NC_004547.2 2351826 2352485 D Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 ABC transporter integral membrane protein sfbC SWALL:AAO69940 (EMBL:AE016842) (219 aa) fasta scores: E(): 5.5e-61, 81.65% id in 218 aa, and to Oceanobacillus iheyensis ABC transporter permease ob2099 SWALL:Q8EPK2 (EMBL:AP004600) (221 aa) fasta scores: E(): 1.1e-40, 57.4% id in 216 aa; ABC transporter permease 2351826..2352485 Pectobacterium atrosepticum SCRI1043 2882256 YP_050160.1 CDS ECA2065 NC_004547.2 2352527 2353639 D Similar to Amycolatopsis sp N-acylamino acid racemase aaaR SWALL:Q44244 (EMBL:D30738) (368 aa) fasta scores: E(): 5.9e-54, 43.09% id in 362 aa, and to Bacillus subtilis O-succinylbenzoate-CoA synthase menC SWALL:O34514 (EMBL:AF008220) (371 aa) fasta scores: E(): 4e-66, 48.5% id in 369 aa; N-acylamino acid racemase 2352527..2353639 Pectobacterium atrosepticum SCRI1043 2881834 YP_050161.1 CDS ECA2066 NC_004547.2 2353959 2354768 D Similar to Salmonella typhimurium, and Salmonella enteritidis ABC-type transport system ATPase component/cell division protein sfba or stm0510 SWALL:Q9S4Z1 (EMBL:AE008719) (276 aa) fasta scores: E(): 4.6e-58, 63.32% id in 259 aa, and to Oceanobacillus iheyensis lipoprotein ob2098 SWALL:BAC14054 (EMBL:AP004600) (274 aa) fasta scores: E(): 1.2e-37, 44.65% id in 262 aa; lipoprotein 2353959..2354768 Pectobacterium atrosepticum SCRI1043 2881835 YP_050162.1 CDS bor NC_004547.2 2354962 2355252 D Similar to Bacteriophage lambda Bor lipoprotein precursor boR SWALL:BOR_LAMBD (SWALL:P26814) (97 aa) fasta scores: E(): 9e-26, 74.22% id in 97 aa, and to Escherichia coli Iss SWALL:Q9XDL2 (EMBL:AF042279) (102 aa) fasta scores: E(): 1.1e-25, 71.87% id in 96 aa; lipoprotein 2354962..2355252 Pectobacterium atrosepticum SCRI1043 2884102 YP_050163.1 CDS ECA2068 NC_004547.2 2355815 2357275 D Similar to Pseudomonas sp. KIE171 permease ipuG SWALL:Q936S6 (EMBL:AJ311159) (476 aa) fasta scores: E(): 4.2e-47, 34.95% id in 472 aa, and to Pseudomonas aeruginosa amino acid permease SWALL:AAN62240 (EMBL:AF440524) (476 aa) fasta scores: E(): 2.5e-45, 32.77% id in 476 aa; permease 2355815..2357275 Pectobacterium atrosepticum SCRI1043 2881836 YP_050164.1 CDS ECA2069 NC_004547.2 2357361 2358035 R Similar to Oceanobacillus iheyensis transcriptional regulator ob0289 SWALL:BAC12245 (EMBL:AP004594) (184 aa) fasta scores: E(): 0.0055, 20.87% id in 182 aa, and to Streptomyces coelicolor transcriptional regulator sco6121 or sc9b2.08C SWALL:Q9Z551 (EMBL:AL939126) (192 aa) fasta scores: E(): 0.011, 29.47% id in 95 aa; TetR family transcriptional regulator complement(2357361..2358035) Pectobacterium atrosepticum SCRI1043 2881837 YP_050165.1 CDS ECA2070 NC_004547.2 2358133 2359305 R Similar to Pseudomonas putida major facilitator family transporter pp3368 SWALL:AAN68972 (EMBL:AE016786) (394 aa) fasta scores: E(): 6.5e-73, 53.29% id in 379 aa, and to Xanthomonas axonopodis mfs transporter araj or xac1363 SWALL:Q8PMR3 (EMBL:AE011767) (393 aa) fasta scores: E(): 5.5e-71, 51.59% id in 376 aa; major facilitator family transporter complement(2358133..2359305) Pectobacterium atrosepticum SCRI1043 2881672 YP_050166.1 CDS ECA2071 NC_004547.2 2359589 2360806 R Similar to Mycobacterium leprae cytochrome P450 ml2088 SWALL:Q9CBE7 (EMBL:AL583924) (434 aa) fasta scores: E(): 7.1e-22, 26.3% id in 422 aa, and to Bacillus subtilis cytochrome P450 YjiB SWALL:YJIB_BACSU (SWALL:O34374) (396 aa) fasta scores: E(): 1.8e-20, 27.11% id in 343 aa; cytochrome P450 complement(2359589..2360806) Pectobacterium atrosepticum SCRI1043 2881673 YP_050167.1 CDS ECA2072 NC_004547.2 2360796 2361239 R Similar to Citrobacter braakii cindoxin cinC SWALL:Q8VQF4 (EMBL:AF456128) (154 aa) fasta scores: E(): 3.2e-13, 37.5% id in 144 aa, and to Escherichia coli protein mioc mioc or b3742 SWALL:MIOC_ECOLI (SWALL:P03817) (146 aa) fasta scores: E(): 8.1e-09, 33.89% id in 118 aa; flavodoxin complement(2360796..2361239) Pectobacterium atrosepticum SCRI1043 2881674 YP_050168.1 CDS ECA2073 NC_004547.2 2361327 2362568 R Similar to Salvelinus fontinalis NADPH:adrenodoxin oxidoreductase, mitochondrial precursor SWALL:ADRO_SALFO (SWALL:P82861) (498 aa) fasta scores: E(): 1.5e-23, 31.73% id in 460 aa, and to Rhodococcus rhodochrous adrenodoxin reductase-like XplB SWALL:Q8GPH8 (EMBL:AF449421) (425 aa) fasta scores: E(): 2.2e-52, 40.32% id in 429 aa; oxidoreductase complement(2361327..2362568) Pectobacterium atrosepticum SCRI1043 2881479 YP_050169.1 CDS ECA2074 NC_004547.2 2363122 2364543 R Similar to Bradyrhizobium japonicum Bll7601 protein bll7601 SWALL:BAC52866 (EMBL:AP005962) (461 aa) fasta scores: E(): 4.6e-94, 52.19% id in 456 aa, and to Streptomyces coelicolor peptidase sco5185 or 2sc3b6.09 SWALL:Q9FCK3 (EMBL:AL939122) (470 aa) fasta scores: E(): 1.8e-25, 29.97% id in 457 aa; hypothetical protein complement(2363122..2364543) Pectobacterium atrosepticum SCRI1043 2881480 YP_050170.1 CDS ECA2075 NC_004547.2 2364687 2365619 D Similar to Escherichia coli cyn operon transcriptional activator CynR or b0338 SWALL:CYNR_ECOLI (SWALL:P27111) (311 aa) fasta scores: E(): 4.5e-14, 29.51% id in 288 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein bll3773 SWALL:BAC49038 (EMBL:AP005948) (312 aa) fasta scores: E(): 9e-17, 30.79% id in 302 aa; LysR family transcriptional regulator 2364687..2365619 Pectobacterium atrosepticum SCRI1043 2881481 YP_050171.1 CDS hrcU NC_004547.2 2365644 2366723 R Similar to Erwinia amylovora HrcU SWALL:Q46649 (EMBL:L25828) (360 aa) fasta scores: E(): 1e-95, 66.94% id in 360 aa, and to Pantoea agglomerans HrcU protein HrcU SWALL:Q47859 (EMBL:X99768) (360 aa) fasta scores: E(): 5.4e-92, 64.34% id in 359 aa; type III secretion system protein complement(2365644..2366723) Pectobacterium atrosepticum SCRI1043 2885245 YP_050172.1 CDS hrcT NC_004547.2 2366737 2367537 R Similar to Erwinia amylovora HrcT SWALL:Q46648 (EMBL:L25828) (265 aa) fasta scores: E(): 2.4e-69, 66.92% id in 257 aa, and to Pantoea agglomerans HrcT protein HrcT SWALL:Q47858 (EMBL:X99768) (265 aa) fasta scores: E(): 4.5e-67, 62.3% id in 260 aa; type III secretion system protein complement(2366737..2367537) Pectobacterium atrosepticum SCRI1043 2885256 YP_050173.1 CDS hrcS NC_004547.2 2367544 2367804 R Similar to Erwinia amylovora HrcS SWALL:Q46647 (EMBL:L25828) (86 aa) fasta scores: E(): 2.8e-22, 76.19% id in 84 aa, and to Pantoea agglomerans HrcS protein HrcS SWALL:Q47857 (EMBL:X99768) (83 aa) fasta scores: E(): 2.6e-21, 75.61% id in 82 aa; type III secretion system protein complement(2367544..2367804) Pectobacterium atrosepticum SCRI1043 2885255 YP_050174.1 CDS hrcR NC_004547.2 2367812 2368465 R part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein complement(2367812..2368465) Pectobacterium atrosepticum SCRI1043 2885254 YP_050175.1 CDS hrcQ NC_004547.2 2368462 2369679 R Similar to Erwinia amylovora HrcQ SWALL:Q46645 (EMBL:L25828) (338 aa) fasta scores: E(): 1.8e-11, 34.59% id in 370 aa, and to Pantoea agglomerans HrcQb protein SWALL:Q47855 (EMBL:X99768) (108 aa) fasta scores: E(): 9.8e-11, 46.22% id in 106 aa; type III secretion system protein complement(2368462..2369679) Pectobacterium atrosepticum SCRI1043 2885263 YP_050176.1 CDS hrpP NC_004547.2 2369676 2370197 R Similar to Erwinia amylovora HrpP SWALL:Q46644 (EMBL:L25828) (158 aa) fasta scores: E(): 1.6e-06, 36.6% id in 112 aa, and to Pantoea agglomerans HrcQa protein hrcQa SWALL:Q47853 (EMBL:X99768) (157 aa) fasta scores: E(): 8e-06, 28.81% id in 118 aa; type III secretion system protein complement(2369676..2370197) Pectobacterium atrosepticum SCRI1043 2884825 YP_050177.1 CDS hrpO NC_004547.2 2370194 2370631 R Similar to Erwinia amylovora HrpO SWALL:Q46643 (EMBL:L25828) (148 aa) fasta scores: E(): 6.5e-09, 41.73% id in 127 aa, and to Pantoea agglomerans HrpO protein SWALL:Q937I2 (EMBL:X99768) (146 aa) fasta scores: E(): 0.0013, 30.7% id in 127 aa; type III secretion system protein complement(2370194..2370631) Pectobacterium atrosepticum SCRI1043 2884862 YP_050178.1 CDS hrcN NC_004547.2 2370621 2371991 R Similar to Erwinia amylovora HrcN SWALL:Q46642 (EMBL:L25828) (454 aa) fasta scores: E(): 3.9e-124, 78.7% id in 446 aa, and to Pantoea agglomerans HrcN protein HrcN SWALL:Q937I3 (EMBL:X99768) (454 aa) fasta scores: E(): 4.7e-121, 76.4% id in 445 aa; type III secretion system protein complement(2370621..2371991) Pectobacterium atrosepticum SCRI1043 2885262 YP_050179.1 CDS hrpQ NC_004547.2 2371988 2372923 R Similar to Erwinia amylovora HrpQ SWALL:Q46641 (EMBL:L25828) (310 aa) fasta scores: E(): 3.4e-50, 48.89% id in 317 aa, and to Pantoea agglomerans HrpQ protein HrpQ SWALL:Q937I4 (EMBL:X99768) (307 aa) fasta scores: E(): 4.9e-47, 46.96% id in 313 aa; type III secretion system protein complement(2371988..2372923) Pectobacterium atrosepticum SCRI1043 2884826 YP_050180.1 CDS hrpI NC_004547.2 2372933 2375035 R Similar to Erwinia amylovora harpin secretion protein HrpI SWALL:HRPI_ERWAM (SWALL:P35654) (697 aa) fasta scores: E(): 2e-193, 76.35% id in 702 aa, and to Pantoea agglomerans HrcV protein HrcV SWALL:Q937I5 (EMBL:X99768) (719 aa) fasta scores: E(): 2.2e-196, 75.42% id in 704 aa; type III secretion system protein complement(2372933..2375035) Pectobacterium atrosepticum SCRI1043 2885088 YP_050181.1 CDS hrpJ NC_004547.2 2375032 2376222 R Similar to Pectobacterium carotovorum subsp. atrosepticum secretion protein HrpJ type III HrpJ SWALL:Q8KM25 (EMBL:AJ496800) (402 aa) fasta scores: E(): 1.2e-121, 90.79% id in 402 aa, and to Erwinia chrysanthemi HrpJ WALL:AAO34609 (EMBL:AY169276) (393 aa) fasta scores: E(): 2.3e-80, 64.59% id in 387 aa; type III secretion system protein complement(2375032..2376222) Pectobacterium atrosepticum SCRI1043 2885089 YP_050182.1 CDS hrpL NC_004547.2 2376550 2377092 D Similar to Erwinia chrysanthemi HrpL WALL:Q8KUM5 (EMBL:AF448202) (184 aa) fasta scores: E(): 9.4e-40, 71.42% id in 168 aa, and to Erwinia pyrifoliae sigma factor hrpL SWALL:CAD27523 (EMBL:AJ438881) (182 aa) fasta scores: E(): 1.9e-31, 56.97% id in 165 aa; sigma factor 2376550..2377092 Pectobacterium atrosepticum SCRI1043 2884860 YP_050183.1 CDS hrpX NC_004547.2 2377334 2378770 D Similar to Erwinia chrysanthemi HrpX SWALL:Q8KUM4 (EMBL:AF448202) (450 aa) fasta scores: E(): 3.4e-115, 68.25% id in 441 aa, and to Erwinia amylovora sensor kinase HrpX SWALL:Q9X3S8 (EMBL:AF083877) (494 aa) fasta scores: E(): 9.5e-100, 56.13% id in 481 aa; two-component sensor kinase 2377334..2378770 Pectobacterium atrosepticum SCRI1043 2884614 YP_050184.1 CDS hrpY NC_004547.2 2378840 2379481 D Similar to Erwinia chrysanthemi HrpY SWALL:Q8KUM3 (EMBL:AF448202) (213 aa) fasta scores: E(): 6.8e-57, 75.94% id in 212 aa, and to Erwinia amylovora response regulator HrpY SWALL:Q9X3S9 (EMBL:AF083877) (213 aa) fasta scores: E(): 1.3e-51, 69.34% id in 212 aa; two-component response regulator 2378840..2379481 Pectobacterium atrosepticum SCRI1043 2884527 YP_050185.1 CDS hrpS NC_004547.2 2379836 2380900 D Similar to Erwinia chrysanthemi HrpS SWALL:Q8KUM2 (EMBL:AF448202) (327 aa) fasta scores: E(): 6.8e-80, 74.67% id in 304 aa, and to Erwinia amylovora sigma-54-dependent enhancer-binding protein HrpS SWALL:Q9X3T0 (EMBL:AF083877) (324 aa) fasta scores: E(): 6.8e-66, 61.99% id in 321 aa; sigma-54-dependent enhancer-binding protein 2379836..2380900 Pectobacterium atrosepticum SCRI1043 2884827 YP_050186.1 CDS ECA2091 NC_004547.2 2380997 2382616 R Similar to Pseudomonas aeruginosa hypothetical protein Pa2200 SWALL:Q9I1R7 (EMBL:AE004646) (531 aa) fasta scores: E(): 4e-52, 32.23% id in 518 aa, and to Salmonella typhimurium diguanylate cyclase/phosphodiesterase domain 2 ylab or stm0468 SWALL:Q8ZRB0 (EMBL:AE008717) (516 aa) fasta scores: E(): 2.3e-34, 29.72% id in 508 aa; signaling membrane protein complement(2380997..2382616) Pectobacterium atrosepticum SCRI1043 2881224 YP_050187.1 CDS ECA2092 NC_004547.2 2382636 2382794 D Doubtful CDS. no significant database matches; hypothetical protein 2382636..2382794 Pectobacterium atrosepticum SCRI1043 2881225 YP_050188.1 CDS hrpA NC_004547.2 2382958 2383164 D Similar to Pectobacterium carotovorum subsp. carotovorum HrpA SWALL:Q93FZ8 (EMBL:AF302656) (68 aa) fasta scores: E(): 5.7e-21, 100% id in 68 aa, and to Erwinia chrysanthemi HrpA SWALL:Q8KUM1 (EMBL:AF448202) (66 aa) fasta scores: E(): 5.9e-11, 63.63% id in 66 aa; type III secretion system protein 2382958..2383164 Pectobacterium atrosepticum SCRI1043 2885246 YP_050189.1 CDS hrpB NC_004547.2 2383167 2383604 D Similar to Pectobacterium carotovorum subsp. carotovorum HrpB SWALL:Q93FZ7 (EMBL:AF302656) (144 aa) fasta scores: E(): 1.3e-49, 95.1% id in 143 aa, and to Erwinia chrysanthemi HrpB SWALL:Q8KUM0 (EMBL:AF448202) (122 aa) fasta scores: E(): 1.9e-18, 62.03% id in 108 aa; type III secretion system protein 2383167..2383604 Pectobacterium atrosepticum SCRI1043 2885247 YP_050190.1 CDS hrcJ NC_004547.2 2383611 2384378 D Similar to Pectobacterium carotovorum subsp. carotovorum HrcJ SWALL:Q93FZ6 (EMBL:AF302656) (255 aa) fasta scores: E(): 2.1e-90, 95.66% id in 254 aa, and to Erwinia chrysanthemi HrcJ SWALL:Q8KUL9 (EMBL:AF448202) (245 aa) fasta scores: E(): 5.5e-67, 75.94% id in 237 aa; type III secretion system protein 2383611..2384378 Pectobacterium atrosepticum SCRI1043 2885261 YP_050191.1 CDS hrpD NC_004547.2 2384375 2385007 D Similar to Pectobacterium carotovorum subsp. carotovorum HrpD SWALL:Q93FZ5 (EMBL:AF302656) (209 aa) fasta scores: E(): 2.5e-67, 76.52% id in 213 aa, and to Erwinia chrysanthemi HrpD SWALL:Q8KUL8 (EMBL:AF448202) (192 aa) fasta scores: E(): 3.3e-21, 43.14% id in 197 aa; type III secretion system protein 2384375..2385007 Pectobacterium atrosepticum SCRI1043 2885282 YP_050192.1 CDS hrpE NC_004547.2 2385045 2385647 D Similar to Pectobacterium carotovorum subsp. carotovorum HrpE SWALL:Q93FZ4 (EMBL:AF302656) (199 aa) fasta scores: E(): 3.5e-65, 87.37% id in 198 aa, and to Erwinia chrysanthemi HrpE SWALL:Q8KUL7 (EMBL:AF448202) (200 aa) fasta scores: E(): 7.5e-28, 42.85% id in 196 aa; type III secretion system protein 2385045..2385647 Pectobacterium atrosepticum SCRI1043 2885283 YP_050193.1 CDS hrpF NC_004547.2 2385755 2385979 D Similar to Pectobacterium carotovorum subsp. carotovorum HrpF SWALL:Q93FZ3 (EMBL:AF302656) (74 aa) fasta scores: E(): 3.6e-27, 97.29% id in 74 aa, and to Erwinia chrysanthemi HrpF SWALL:P94765 (EMBL:AF501263) (75 aa) fasta scores: E(): 6.1e-19, 72.6% id in 73 aa; type III secretion system protein 2385755..2385979 Pectobacterium atrosepticum SCRI1043 2885284 YP_050194.1 CDS hrpG NC_004547.2 2385990 2386400 D Similar to Pectobacterium carotovorum subsp. carotovorum HrpG SWALL:Q93FZ2 (EMBL:AF302656) (136 aa) fasta scores: E(): 3.7e-48, 87.5% id in 136 aa, and to Erwinia chrysanthemi secretion protein HrpG SWALL:Q8KWF8 (EMBL:AF411590) (144 aa) fasta scores: E(): 1.1e-22, 49.26% id in 136 aa; type III secretion system protein 2385990..2386400 Pectobacterium atrosepticum SCRI1043 2885087 YP_050195.1 CDS hrcC NC_004547.2 2386393 2388462 D Similar to Pectobacterium carotovorum subsp. carotovorum HrcC SWALL:Q93FZ1 (EMBL:AF302656) (689 aa) fasta scores: E(): 0, 95.78% id in 688 aa, and to Erwinia amylovora HrcC precursor SWALL:Q46625 (EMBL:U56662) (676 aa) fasta scores: E(): 1.3e-169, 68.65% id in 654 aa; type III secretion system protein 2386393..2388462 Pectobacterium atrosepticum SCRI1043 2885260 YP_050196.1 CDS hrpT NC_004547.2 2388490 2388681 D Similar to Pectobacterium carotovorum subsp. carotovorum HrpT SWALL:Q93FZ0 (EMBL:AF302656) (63 aa) fasta scores: E(): 9.6e-22, 84.12% id in 63 aa, and to Erwinia chrysanthemi HrpT precursor SWALL:P94768 (EMBL:AF501263) (61 aa) fasta scores: E(): 6.3e-11, 50.82% id in 61 aa; type III secretion system lipoprotein 2388490..2388681 Pectobacterium atrosepticum SCRI1043 2884828 YP_050197.1 CDS hrpV NC_004547.2 2388674 2389021 D Similar to Pectobacterium carotovorum subsp. carotovorum HrpV SWALL:Q93FY9 (EMBL:AF302656) (115 aa) fasta scores: E(): 8.9e-35, 80% id in 115 aa, and to Erwinia chrysanthemi HrpV SWALL:P94769 (EMBL:AF501263) (136 aa) fasta scores: E(): 8.8e-07, 34.51% id in 113 aa; type III secretion system protein 2388674..2389021 Pectobacterium atrosepticum SCRI1043 2884612 YP_050198.1 CDS hrpN NC_004547.2 2389167 2390282 D Similar to Pectobacterium carotovorum subsp. carotovorum HrpN SWALL:Q93FY8 (EMBL:AF302656) (356 aa) fasta scores: E(): 4e-79, 91.37% id in 371 aa, and to Erwinia carotovora harpin hrpN SWALL:HRPN_ERWCA (SWALL:Q47279) (356 aa) fasta scores: E(): 2.2e-78, 90.83% id in 371 aa; hypothetical protein 2389167..2390282 Pectobacterium atrosepticum SCRI1043 2884861 YP_050199.1 CDS ECA2104 NC_004547.2 2390748 2392775 D Similar to Escherichia coli VgrG protein SWALL:O52679 (EMBL:AF044506) (713 aa) fasta scores: E(): 4.2e-76, 37.78% id in 651 aa, and to Vibrio cholerae VgrG protein vc1416 SWALL:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 1.2e-121, 52.95% id in 676 aa; VgrG protein 2390748..2392775 Pectobacterium atrosepticum SCRI1043 2881226 YP_050200.1 CDS ECA2105 NC_004547.2 2392772 2393569 D Weakly similar to Xanthomonas oryzae HrpG SWALL:Q938P2 (EMBL:AY049753) (263 aa) fasta scores: E(): 8, 28.07% id in 114 aa, and to Vibrio cholerae hypothetical protein Vc1417 SWALL:Q9KS44 (EMBL:AE004220) (286 aa) fasta scores: E(): 1.1e-07, 26.29% id in 251 aa; type III secretion system protein 2392772..2393569 Pectobacterium atrosepticum SCRI1043 2881916 YP_050201.1 CDS ECA2106 NC_004547.2 2393569 2395563 D No significant database matches. Strongly similar to ECA4356 (88.084% id) and ECA4431 (87.651% id).; hypothetical protein 2393569..2395563 Pectobacterium atrosepticum SCRI1043 2881917 YP_050202.1 CDS ECA2107 NC_004547.2 2395563 2396264 D Similar to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 3.1e-26, 42.85% id in 224 aa, and to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 1.3e-25, 39.66% id in 237 aa. Also similar to ECA2108 (83.051% id), ECA2109 (72.152% id), ECA4357 (77.637% id) and ECA4430 (80.085% id).; lipoprotein 2395563..2396264 Pectobacterium atrosepticum SCRI1043 2881918 YP_050203.1 CDS ECA2108 NC_004547.2 2396319 2397029 D Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 6.5e-27, 38.91% id in 239 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 9.8e-25, 40% id in 225 aa; lipoprotein 2396319..2397029 Pectobacterium atrosepticum SCRI1043 2882008 YP_050204.1 CDS ECA2109 NC_004547.2 2397084 2397791 D Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 7.6e-29, 40.75% id in 238 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 9.1e-28, 43.55% id in 225 aa. Also similar to ECA2107 (72.152% id), ECA2108 (72.152% id), ECA4357 (87.234% id) and ECA4430 (85.470% id).; lipoprotein 2397084..2397791 Pectobacterium atrosepticum SCRI1043 2882009 YP_050205.1 CDS ECA2110 NC_004547.2 2397840 2398106 D Similar to Vibrio cholerae hypothetical protein Vca0105 SWALL:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 3.1e-16, 58.51% id in 94 aa, and to Escherichia coli O6 hypothetical protein c1887 SWALL:AAN80347 (EMBL:AE016760) (94 aa) fasta scores: E(): 8.3e-15, 58.51% id in 94 aa; hypothetical protein 2397840..2398106 Pectobacterium atrosepticum SCRI1043 2882010 YP_050206.1 CDS ECA2111 NC_004547.2 2398203 2398526 R Similar to Erwinia amylovora potential HrpW-specific chaperone SWALL:O87915 (EMBL:U94513) (110 aa) fasta scores: E(): 2e-10, 38.46% id in 104 aa; potential HrpW-specific chaperone complement(2398203..2398526) Pectobacterium atrosepticum SCRI1043 2882011 YP_050207.1 CDS hrpW NC_004547.2 2398528 2399967 R Similar to Erwinia amylovora HrpW protein SWALL:O54508 (EMBL:Y13831) (447 aa) fasta scores: E(): 2.7e-36, 50.67% id in 448 aa, and to Pseudomonas syringae pv. maculicola type III effector hrpwpma SWALL:Q8RP12 (EMBL:AF458044) (424 aa) fasta scores: E(): 4.4e-28, 42.12% id in 470 aa; type III effector protein complement(2398528..2399967) Pectobacterium atrosepticum SCRI1043 2884613 YP_050208.1 CDS dspE NC_004547.2 2400144 2404988 D Similar to Erwinia amylovora DspE or DspA SWALL:O54581 (EMBL:U97504) (1838 aa) fasta scores: E(): 1.7e-101, 39.38% id in 1658 aa, and to Pseudomonas syringae avirulence protein AvrE SWALL:O66101 (EMBL:U97505) (1795 aa) fasta scores: E(): 1.6e-30, 28.32% id in 1592 aa; avirulence protein 2400144..2404988 Pectobacterium atrosepticum SCRI1043 2885423 YP_050209.1 CDS dspF NC_004547.2 2405023 2405445 D Similar to Erwinia amylovora DspF or DspB SWALL:O54621 (EMBL:U97504) (139 aa) fasta scores: E(): 1.8e-19, 42.85% id in 133 aa, and to Pseudomonas syringae avirulence protein AvrF SWALL:O66102 (EMBL:U97505) (129 aa) fasta scores: E(): 1.1e-13, 36.64% id in 131 aa; avirulence protein 2405023..2405445 Pectobacterium atrosepticum SCRI1043 2885424 YP_050210.1 CDS ECA2115 NC_004547.2 2405455 2406120 R Similar to Rhizobium meliloti GntR-family transcriptional regulator ra0971 or sma1759 SWALL:Q92YB3 (EMBL:AE007283) (226 aa) fasta scores: E(): 4.3e-29, 45.23% id in 210 aa, and to Brucella suis transcriptional regulator, bra1096 SWALL:AAN34260 (EMBL:AE014602) (237 aa) fasta scores: E(): 3e-22, 40.65% id in 214 aa; transcriptional regulator complement(2405455..2406120) Pectobacterium atrosepticum SCRI1043 2882028 YP_050211.1 CDS hecB NC_004547.2 2406458 2408131 D Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 1e-144, 65.17% id in 537 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 6.5e-35, 27.27% id in 550 aa; hemolysin activator protein 2406458..2408131 Pectobacterium atrosepticum SCRI1043 2883059 YP_050212.1 CDS hecA1 NC_004547.2 2408181 2411585 D Similar to Erwinia chrysanthemi hemolysin/hemagglutinin-like protein HecA precursor HecA SWALL:AAN38708 (EMBL:AF501263) (3848 aa) fasta scores: E(): 3.6e-110, 43.11% id in 1148 aa; hemolysin/hemagglutinin-like protein 2408181..2411585 Pectobacterium atrosepticum SCRI1043 2883057 YP_050213.1 CDS hecA2 NC_004547.2 2411693 2426503 D Similar to Erwinia chrysanthemi hemolysin/hemagglutinin-like protein HecA precursor HecA SWALL:P94772 (EMBL:AF501263) (3848 aa) fasta scores: E(): 7.2e-116, 36.39% id in 4407 aa; hemolysin/hemagglutinin-like protein HecA 2411693..2426503 Pectobacterium atrosepticum SCRI1043 2883058 YP_050214.1 CDS ECA2119 NC_004547.2 2426505 2426837 D hypothetical protein 2426505..2426837 Pectobacterium atrosepticum SCRI1043 2882029 YP_050215.1 CDS ECA2120 NC_004547.2 2426874 2427218 R hypothetical protein complement(2426874..2427218) Pectobacterium atrosepticum SCRI1043 2882030 YP_050216.1 CDS ECA2121 NC_004547.2 2427215 2427421 R Similar to Yersinia pestis hypothetical y0261 SWALL:Q8CLT6 (EMBL:AE013626) (74 aa) fasta scores: E(): 5.8e-07, 62.22% id in 45 aa, and to Enterococcus faecalis V583 hypothetical protein SWALL:AAO82028 (EMBL:AE016954) (72 aa) fasta scores: E(): 0.9, 37.83% id in 37 aa; hypothetical protein complement(2427215..2427421) Pectobacterium atrosepticum SCRI1043 2881580 YP_050217.1 CDS ECA2122 NC_004547.2 <2427394 2427585 D Partial CDS. Similar to the C-terminal regions of several including Photorhabdus luminescens Int SWALL:AAN64203 (EMBL:AY144117) (465 aa) fasta scores: E(): 0.0021, 44.23% id in 52 aa, and to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 0.0064, 56.75% id in 37 aa; integrase/recombinase (partial) <2427394..2427585 Pectobacterium atrosepticum SCRI1043 2881581 YP_050218.1 CDS ECA2123 NC_004547.2 2427682 2427825 D hypothetical protein 2427682..2427825 Pectobacterium atrosepticum SCRI1043 2881582 YP_050219.1 CDS ECA2124 NC_004547.2 2428006 2428491 R hypothetical protein complement(2428006..2428491) Pectobacterium atrosepticum SCRI1043 2881612 YP_050220.1 CDS ECA2125 NC_004547.2 2428467 2428961 D hypothetical protein 2428467..2428961 Pectobacterium atrosepticum SCRI1043 2881613 YP_050221.1 CDS ECA2126 NC_004547.2 2428961 2429380 D Similar to Listeria monocytogenes hypothetical protein Lmo1120 SWALL:Q8Y7Z9 (EMBL:AL591977) (138 aa) fasta scores: E(): 5.3e-24, 54.88% id in 133 aa; hypothetical protein 2428961..2429380 Pectobacterium atrosepticum SCRI1043 2881614 YP_050222.1 CDS ECA2127 NC_004547.2 2429382 2429813 D Similar to Listeria innocua hypothetical protein Lin1089 lin1089 SWALL:Q92CT2 (EMBL:AL596167) (145 aa) fasta scores: E(): 0.0006, 26.47% id in 136 aa, and to Listeria monocytogenes hypothetical protein Lmo1124 SWALL:Q8Y7Z5 (EMBL:AL591977) (145 aa) fasta scores: E(): 0.0071, 22.62% id in 137 aa; hypothetical protein 2429382..2429813 Pectobacterium atrosepticum SCRI1043 2885120 YP_050223.1 CDS ECA2128 NC_004547.2 2430108 2431115 D Similar to Escherichia coli O6 hypothetical protein c1207 SWALL:Q8FIZ4 (EMBL:AE016758) (537 aa) fasta scores: E(): 2.6e-19, 50.5% id in 295 aa; hypothetical protein 2430108..2431115 Pectobacterium atrosepticum SCRI1043 2885121 YP_050224.1 CDS ECA2129 NC_004547.2 2431182 2431634 D hypothetical protein 2431182..2431634 Pectobacterium atrosepticum SCRI1043 2885122 YP_050225.1 CDS ECA2130 NC_004547.2 2431737 2432021 D hypothetical protein 2431737..2432021 Pectobacterium atrosepticum SCRI1043 2884929 YP_050226.1 CDS ECA2131 NC_004547.2 2432247 2432537 D hypothetical protein 2432247..2432537 Pectobacterium atrosepticum SCRI1043 2884930 YP_050227.1 CDS ECA2132 NC_004547.2 2432551 2433018 D Similar to Pseudomonas putida carbon-nitrogen hydrolase family protein pp3019 SWALL:AAN68627 (EMBL:AE016785) (247 aa) fasta scores: E(): 1.6e-22, 50.35% id in 141 aa, and to Ralstonia solanacearum hypothetical protein rsc0704 or rs01509 SWALL:Q8Y1I6 (EMBL:AL646060) (249 aa) fasta scores: E(): 2.1e-10, 33.33% id in 135 aa; hypothetical protein 2432551..2433018 Pectobacterium atrosepticum SCRI1043 2884931 YP_050228.1 CDS ECA2133 NC_004547.2 2433253 2433552 R hypothetical protein complement(2433253..2433552) Pectobacterium atrosepticum SCRI1043 2884932 YP_050229.1 CDS ECA2134 NC_004547.2 2433584 2434705 D Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu2014 or agr_c_3652 SWALL:Q8UDV5 (EMBL:AE009153) (327 aa) fasta scores: E(): 7.6e-08, 23.3% id in 266 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2377 SWALL:Q9I1A2 (EMBL:AE004664) (424 aa) fasta scores: E(): 8.8e-43, 39.38% id in 325 aa; ABC transporter substrate binding protein 2433584..2434705 Pectobacterium atrosepticum SCRI1043 2884850 YP_050230.1 CDS ECA2135 NC_004547.2 2434874 2436580 R Similar to Erwinia carotovora periplasmic pectate lyase precursor PelB SWALL:PELP_ERWCA (SWALL:P14005) (568 aa) fasta scores: E(): 0, 97% id in 568 aa, and to Erwinia carotovora pectatelyase SWALL:Q47466 (EMBL:J03673) (568 aa) fasta scores: E(): 0, 96.3% id in 568 aa. Also similar to ECA2402 (PelB) (37.782% id 532 aa overlap); periplasmic pectate lyase complement(2434874..2436580) Pectobacterium atrosepticum SCRI1043 2884851 YP_050231.1 CDS ECA2136 NC_004547.2 2436680 2437444 R Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein yiiy precursor yiiy or stm4051 or sty3821 SWALL:YIIY_SALTY (SWALL:P43022) (227 aa) fasta scores: E(): 3.1e-05, 23.96% id in 242 aa, and to Yersinia pestis exported protein ypo3995 or y3833 SWALL:AAM87378 (EMBL:AJ414160) (234 aa) fasta scores: E(): 0.00025, 21.42% id in 238 aa; hypothetical protein complement(2436680..2437444) Pectobacterium atrosepticum SCRI1043 2884852 YP_050232.1 CDS ECA2137 NC_004547.2 2437563 2438381 R Similar to Erwinia chrysanthemi oligogalacturonate-specific porin KdgM precursor KdgM SWALL:KDGM_ERWCH (SWALL:Q934G3) (236 aa) fasta scores: E(): 5e-05, 26.72% id in 247 aa, and to Salmonella typhi secreted protein sty1168 SWALL:Q8Z7M9 (EMBL:AL627269) (230 aa) fasta scores: E(): 5.4e-06, 27.83% id in 273 aa; hypothetical protein complement(2437563..2438381) Pectobacterium atrosepticum SCRI1043 2884552 YP_050233.1 CDS ECA2138 NC_004547.2 2438378 2438554 R hypothetical protein complement(2438378..2438554) Pectobacterium atrosepticum SCRI1043 2884553 YP_050234.1 CDS ECA2139 NC_004547.2 2439081 2439257 R hypothetical protein complement(2439081..2439257) Pectobacterium atrosepticum SCRI1043 2884554 YP_050235.1 CDS ECA2140 NC_004547.2 2439405 2440412 D Similar to Oceanobacillus iheyensis hypothetical protein ob3401 SWALL:BAC15357 (EMBL:AP004604) (363 aa) fasta scores: E(): 3.5e-64, 49.69% id in 328 aa, and to Agrobacterium tumefaciens oxidoreductase atu3965 or agr_l_1780 SWALL:Q8U8X3 (EMBL:AE009327) (338 aa) fasta scores: E(): 4.3e-62, 50.75% id in 333 aa; oxidoreductase 2439405..2440412 Pectobacterium atrosepticum SCRI1043 2884740 YP_050236.1 CDS ECA2141 NC_004547.2 2440593 2442395 D catalyzes the hydrolysis of allophanate; allophanate hydrolase 2440593..2442395 Pectobacterium atrosepticum SCRI1043 2884741 YP_050237.1 CDS ECA2142 NC_004547.2 2442388 2446002 D Similar to the C-terminal region of Saccharomyces cerevisiae urea amidolyase [includes: urea carboxylase and allophanate hydrolase] Dur1,2 or ybr208c or ybr1448 SWALL:DUR1_YEAST (SWALL:P32528) (1835 aa) fasta scores: E(): 0, 52.92% id in 1213 aa, and to Pseudomonas fluorescens urea amidolyase homologue uahA SWALL:Q9XAV3 (EMBL:AJ243652) (1213 aa) fasta scores: E(): 0, 51.47% id in 1224 aa; urea amidolyase 2442388..2446002 Pectobacterium atrosepticum SCRI1043 2884742 YP_050238.1 CDS ECA2143 NC_004547.2 2446059 2446862 D Similar to Streptomyces coelicolor GntR-family transcriptional regulator sco3810 or scgd3.11C SWALL:Q9XA67 (EMBL:AL939117) (216 aa) fasta scores: E(): 1.1e-13, 32.09% id in 215 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein bll3877 SWALL:BAC49142 (EMBL:AP005949) (217 aa) fasta scores: E(): 2e-12, 30.88% id in 204 aa; GntR family transcriptional regulator 2446059..2446862 Pectobacterium atrosepticum SCRI1043 2884033 YP_050239.1 CDS ECA2144 NC_004547.2 2446859 2448127 D Similar to Methylophilus methylotrophus amide-urea binding protein precursor FmdD SWALL:O50371 (EMBL:Y14964) (412 aa) fasta scores: E(): 2e-40, 42.13% id in 375 aa, and to Yersinia pestis substrate-binding periplasmic transport protein ypo1187 SWALL:Q8ZGU0 (EMBL:AJ414147) (422 aa) fasta scores: E(): 4.4e-144, 85.3% id in 422 aa; substrate-binding periplasmic transport protein 2446859..2448127 Pectobacterium atrosepticum SCRI1043 2884034 YP_050240.1 CDS ECA2145 NC_004547.2 2448198 2449772 D Similar to Yersinia pestis branched-chain amino acid transport system, permease component ypo1188 SWALL:Q8ZGT9 (EMBL:AJ414147) (533 aa) fasta scores: E(): 1.5e-133, 73.2% id in 515 aa, and to Pseudomonas putida branched-chain amino acid ABC transporter, permease protein, pp4842 SWALL:AAN70411 (EMBL:AE016792) (346 aa) fasta scores: E(): 4.7e-95, 77.16% id in 346 aa; branched-chain amino acid transport system permease 2448198..2449772 Pectobacterium atrosepticum SCRI1043 2884035 YP_050241.1 CDS ECA2146 NC_004547.2 2449772 2450872 D Similar to Yersinia pestis branched-chain amino acid transport system, permease component ypo1189 SWALL:Q8ZGT8 (EMBL:AJ414147) (358 aa) fasta scores: E(): 1.8e-115, 85.95% id in 356 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter pa4860 SWALL:Q9HUV3 (EMBL:AE004899) (359 aa) fasta scores: E(): 6.2e-107, 78.49% id in 358 aa; branched-chain amino acid transport system permease 2449772..2450872 Pectobacterium atrosepticum SCRI1043 2883953 YP_050242.1 CDS ECA2147 NC_004547.2 2450865 2451701 D Similar to Yersinia pestis ABC transport ATP-binding subunit ypo1190 or y2999 SWALL:Q8ZGT7 (EMBL:AJ414147) (278 aa) fasta scores: E(): 3.4e-72, 80% id in 255 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa4861 SWALL:Q9HUV2 (EMBL:AE004899) (285 aa) fasta scores: E(): 3e-66, 77.82% id in 248 aa; ABC transporter ATP-binding protein 2450865..2451701 Pectobacterium atrosepticum SCRI1043 2883954 YP_050243.1 CDS ECA2148 NC_004547.2 2451703 2452401 D Similar to Yersinia pestis ABC transport ATP-binding subunit ypo1191 SWALL:Q8ZGT6 (EMBL:AJ414147) (232 aa) fasta scores: E(): 7.4e-67, 78.44% id in 232 aa, and to Pseudomonas putida branched-chain amino acid ABC transporter, ATP-binding protein, pp4845 SWALL:AAN70414 (EMBL:AE016792) (232 aa) fasta scores: E(): 6.4e-68, 81.03% id in 232 aa; ABC transporter ATP-binding protein 2451703..2452401 Pectobacterium atrosepticum SCRI1043 2883955 YP_050244.1 CDS ECA2149 NC_004547.2 2452532 2452981 D Similar to Yersinia pestis hypothetical protein ypo1620 or y1780 SWALL:AAM85348 (EMBL:AJ414149) (137 aa) fasta scores: E(): 4.4e-14, 32.11% id in 137 aa, and to Rhizobium loti hypothetical protein Mlr7056 SWALL:Q987H0 (EMBL:AP003010) (136 aa) fasta scores: E(): 10, 27.95% id in 93 aa; hypothetical protein 2452532..2452981 Pectobacterium atrosepticum SCRI1043 2883956 YP_050245.1 CDS ECA2150 NC_004547.2 2453337 2453636 D Similar to Leptospira interrogans conserved hypothetical protein la0782 SWALL:AAN47981 (EMBL:AE011264) (106 aa) fasta scores: E(): 7e-07, 39.02% id in 82 aa, and to Borrelia burgdorferi conserved hypothetical protein bbu09 SWALL:Q9S022 (EMBL:AE001582) (106 aa) fasta scores: E(): 3.3e-06, 33.33% id in 78 aa; hypothetical protein 2453337..2453636 Pectobacterium atrosepticum SCRI1043 2883884 YP_050246.1 CDS ECA2151 NC_004547.2 2453709 >2453852 R Partial CDS. Similar to the C-terminal regions of several including Bradyrhizobium japonicum amino acid ABC transporter ATP-binding protein blr2226 SWALL:BAC47491 (EMBL:AP005943) (243 aa) fasta scores: E(): 4e-07, 57.69% id in 52 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 8.5e-07, 53.84% id in 52 aa; amino acid ABC transporter ATP-binding protein complement(2453709..>2453852) Pectobacterium atrosepticum SCRI1043 2883885 YP_050247.1 CDS ECA2152 NC_004547.2 2453948 2454742 R Similar to Methanosarcina acetivorans methylase ma3534 SWALL:Q8TK82 (EMBL:AE011062) (241 aa) fasta scores: E(): 1.7e-10, 26.01% id in 246 aa, and to Agrobacterium tumefaciens methyltransferase atu1041 or agr_c_1920 SWALL:Q8UGJ6 (EMBL:AE009068) (244 aa) fasta scores: E(): 6.4e-09, 30.18% id in 222 aa; hypothetical protein complement(2453948..2454742) Pectobacterium atrosepticum SCRI1043 2883886 YP_050248.1 CDS ECA2153 NC_004547.2 2455088 2455912 R Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 3.1e-57, 66.91% id in 266 aa, and to Rhizobium meliloti probable ABC transporter, ATP-binding protein ra1185 or sma2195 SWALL:Q92XQ9 (EMBL:AE007304) (254 aa) fasta scores: E(): 1.2e-48, 60.64% id in 249 aa; ABC transporter ATP-binding protein complement(2455088..2455912) Pectobacterium atrosepticum SCRI1043 2883825 YP_050249.1 CDS ECA2154 NC_004547.2 2455934 2456878 R Similar to Rhizobium meliloti ABC transporter, permease ra1186 or sma2197 SWALL:Q92XQ8 (EMBL:AE007304) (304 aa) fasta scores: E(): 5e-36, 39.6% id in 303 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 3.1e-61, 57.86% id in 299 aa; ABC transporter permease complement(2455934..2456878) Pectobacterium atrosepticum SCRI1043 2883826 YP_050250.1 CDS ECA2155 NC_004547.2 2456957 2457511 R Similar to Streptomyces coelicolor acetyltransferase sco3175 or sce87.26 SWALL:Q9RKB2 (EMBL:AL939115) (161 aa) fasta scores: E(): 2e-09, 36.09% id in 133 aa, and to Agrobacterium tumefaciens acetyltransferase atu3418 or agr_l_2808 SWALL:Q8UAF6 (EMBL:AE009272) (181 aa) fasta scores: E(): 3.9e-25, 50.29% id in 169 aa; acetyltransferase complement(2456957..2457511) Pectobacterium atrosepticum SCRI1043 2883827 YP_050251.1 CDS ECA2156 NC_004547.2 2457599 2458582 R Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 1.3e-09, 29.87% id in 231 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3416 or agr_l_2811 SWALL:Q8UAF8 (EMBL:AE009272) (312 aa) fasta scores: E(): 3.4e-50, 50.16% id in 307 aa; ABC transporter substrate binding protein complement(2457599..2458582) Pectobacterium atrosepticum SCRI1043 2883799 YP_050252.1 CDS ECA2157 NC_004547.2 2458678 2459613 R Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 2.1e-09, 28.69% id in 237 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3416 or agr_l_2811 SWALL:Q8UAF8 (EMBL:AE009272) (312 aa) fasta scores: E(): 1.6e-49, 49.67% id in 304 aa; ABC transporter substrate binding protein complement(2458678..2459613) Pectobacterium atrosepticum SCRI1043 2883800 YP_050253.1 CDS ECA2158 NC_004547.2 2459636 2460964 R Similar to Listeria monocytogenes hypothetical protein Lmo2343 SWALL:Q8Y4T9 (EMBL:AL591983) (440 aa) fasta scores: E(): 5.7e-99, 56.72% id in 439 aa, and to Pseudomonas syringae monooxygenase, ntaa/snaa/soxa family pspto2425 SWALL:AAO55934 (EMBL:AE016864) (448 aa) fasta scores: E(): 1.6e-98, 56.65% id in 436 aa; hypothetical protein complement(2459636..2460964) Pectobacterium atrosepticum SCRI1043 2883801 YP_050254.1 CDS hpaC NC_004547.2 2461266 2461811 D Similar to Escherichia coli 4-hydroxyphenylacetate 3-monooxygenase, reductase component HpaC SWALL:HPAC_ECOLI (SWALL:Q57501) (170 aa) fasta scores: E(): 1.8e-19, 41.66% id in 156 aa, and to Escherichia coli flavin:NADH reductase ycdh or b1007 SWALL:YCDH_ECOLI (SWALL:P75893) (164 aa) fasta scores: E(): 5e-35, 60.37% id in 159 aa; 4-hydroxyphenylacetate 3-monooxygenase, reductase component 2461266..2461811 Pectobacterium atrosepticum SCRI1043 2881633 YP_050255.1 CDS ECA2160 NC_004547.2 2462086 2463282 R Similar to Zymomonas mobilis amino acid amido hydrolase SWALL:Q9FDK6 (EMBL:AF212041) (380 aa) fasta scores: E(): 2.3e-79, 55.93% id in 379 aa, and to Bacillus subtilis hypothetical protein yxep yxep or lp9H SWALL:YXEP_BACSU (SWALL:P54955) (380 aa) fasta scores: E(): 3.7e-69, 48.41% id in 378 aa; peptidase complement(2462086..2463282) Pectobacterium atrosepticum SCRI1043 2883796 YP_050256.1 CDS ECA2161 NC_004547.2 2463567 2464547 D Similar to Agrobacterium tumefaciens hypothetical protein atu3421 or agr_l_2803 SWALL:Q8UAF3 (EMBL:AE009272) (335 aa) fasta scores: E(): 1.2e-59, 52.92% id in 325 aa, and to Bacillus subtilis hypothetical protein YtmO SWALL:YTMO_BACSU (SWALL:O34846) (334 aa) fasta scores: E(): 1.3e-44, 44.47% id in 326 aa; luciferase-like monooxygenase 2463567..2464547 Pectobacterium atrosepticum SCRI1043 2883797 YP_050257.1 CDS ECA2162 NC_004547.2 2464656 2465162 D Similar to Escherichia coli hypothetical 19.6 kDa protein SWALL:Q9L910 (EMBL:AF188737) (172 aa) fasta scores: E(): 3.2e-32, 50.29% id in 167 aa, and to Shewanella oneidensis conserved hypothetical protein so1764 SWALL:AAN54818 (EMBL:AE015620) (171 aa) fasta scores: E(): 8.2e-25, 43.97% id in 166 aa; hypothetical protein 2464656..2465162 Pectobacterium atrosepticum SCRI1043 2883798 YP_050258.1 CDS ECA2163 NC_004547.2 2466052 2468013 D Similar to Pseudomonas aeruginosa PapB protein SWALL:Q9F3Y1 (EMBL:AJ277639) (673 aa) fasta scores: E(): 9.1e-146, 57.05% id in 652 aa, and to Escherichia coli alkaline phosphatase isozyme conversion protein precursor Iap or b2753 SWALL:IAP_ECOLI (SWALL:P10423) (345 aa) fasta scores: E(): 4e-24, 35.67% id in 342 aa; autotransporter 2466052..2468013 Pectobacterium atrosepticum SCRI1043 2883762 YP_050259.1 CDS ascG NC_004547.2 2468109 2469152 R Similar to Escherichia coli cryptic asc operon repressor AscG or b2714 SWALL:ASCG_ECOLI (SWALL:P24242) (336 aa) fasta scores: E(): 7.3e-78, 64.34% id in 331 aa; asc operon repressor complement(2468109..2469152) Pectobacterium atrosepticum SCRI1043 2884107 YP_050260.1 CDS ascF NC_004547.2 2469486 2470946 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system cellobiose/arbutin/salicin-specific transporter subunit IIBC 2469486..2470946 Pectobacterium atrosepticum SCRI1043 2884112 YP_050261.1 CDS ascB NC_004547.2 2470978 2472408 D Similar to Escherichia coli 6-phospho-beta-glucosidase AscB or b2716 SWALL:ASCB_ECOLI (SWALL:P24240) (474 aa) fasta scores: E(): 1.2e-171, 83.26% id in 472 aa; cryptic 6-phospho-beta-glucosidase 2470978..2472408 Pectobacterium atrosepticum SCRI1043 2884111 YP_050262.1 CDS ECA2167 NC_004547.2 2472640 2473437 D Similar to Rhizobium loti N-amidino-scyllo-inosamine-4-phosphate phosphatase mll6642 SWALL:Q988Q3 (EMBL:AP003009) (239 aa) fasta scores: E(): 3.3e-47, 56.39% id in 211 aa, and to Agrobacterium rhizogenes Riorf69 protein riorf69 SWALL:Q9KWB5 (EMBL:AB039932) (263 aa) fasta scores: E(): 4e-44, 48.3% id in 265 aa; inositol monophosphatase 2472640..2473437 Pectobacterium atrosepticum SCRI1043 2883763 YP_050263.1 CDS ECA2168 NC_004547.2 2473501 2473887 D Similar to Listeria monocytogenes hypothetical protein Lmo0406 SWALL:Q8Y9W3 (EMBL:AL591975) (126 aa) fasta scores: E(): 3e-16, 43.3% id in 127 aa, and to Bacillus subtilis hypothetical protein YyaH SWALL:YYAH_BACSU (SWALL:P37516) (126 aa) fasta scores: E(): 8.2e-14, 36.22% id in 127 aa; hypothetical protein 2473501..2473887 Pectobacterium atrosepticum SCRI1043 2883764 YP_050264.1 CDS ECA2169 NC_004547.2 2473904 2474320 D hypothetical protein 2473904..2474320 Pectobacterium atrosepticum SCRI1043 2883765 YP_050265.1 CDS ECA2170 NC_004547.2 2474317 2475462 R Similar to Escherichia coli O6 hypothetical protein c3243 SWALL:AAN81695 (EMBL:AE016765) (370 aa) fasta scores: E(): 3.8e-47, 38.31% id in 355 aa, and to Clostridium acetobutylicum polya polymerase related protein cac0753 SWALL:Q97L13 (EMBL:AE007591) (363 aa) fasta scores: E(): 4e-41, 35.24% id in 349 aa; hypothetical protein complement(2474317..2475462) Pectobacterium atrosepticum SCRI1043 2883703 YP_050266.1 CDS ECA2171 NC_004547.2 2475468 2476352 R Similar to Clostridium acetobutylicum homolog of eukaryotic DNA ligase iii cac0752 SWALL:Q97L14 (EMBL:AE007591) (265 aa) fasta scores: E(): 1.4e-47, 46.71% id in 259 aa; hypothetical protein complement(2475468..2476352) Pectobacterium atrosepticum SCRI1043 2883704 YP_050267.1 CDS ECA2172 NC_004547.2 2476854 2477447 D hypothetical protein 2476854..2477447 Pectobacterium atrosepticum SCRI1043 2883705 YP_050268.1 CDS ECA2173 NC_004547.2 2477692 2478756 D Similar to Xylella fastidiosa outer membrane protein xf1739 SWALL:Q9PCN9 (EMBL:AE003997) (385 aa) fasta scores: E(): 1.2e-61, 43.09% id in 355 aa, and to Xanthomonas axonopodis hypothetical protein Xac0250 SWALL:Q8PQS2 (EMBL:AE011649) (351 aa) fasta scores: E(): 1.5e-45, 38.16% id in 338 aa; hypothetical protein 2477692..2478756 Pectobacterium atrosepticum SCRI1043 2883678 YP_050269.1 CDS ECA2174 NC_004547.2 2479015 2479443 R Similar to Pseudomonas syringae conserved hypothetical protein pspto5207 SWALL:AAO58633 (EMBL:AE016874) (131 aa) fasta scores: E(): 1.1, 28.57% id in 77 aa; hypothetical protein complement(2479015..2479443) Pectobacterium atrosepticum SCRI1043 2883679 YP_050270.1 CDS ECA2175 NC_004547.2 2479530 2479928 R Similar to Rhizobium leguminosarum urease-associated hypothetical protein SWALL:Q8RPY4 (EMBL:AF347070) (135 aa) fasta scores: E(): 1.3e-07, 31.2% id in 125 aa, and to Agrobacterium tumefaciens hypothetical protein atu2403 or agr_c_4360 SWALL:Q8UCT0 (EMBL:AE009188) (141 aa) fasta scores: E(): 2.8e-07, 29.13% id in 127 aa; hypothetical protein complement(2479530..2479928) Pectobacterium atrosepticum SCRI1043 2883680 YP_050271.1 CDS ECA2176 NC_004547.2 2479939 2480340 R hypothetical protein complement(2479939..2480340) Pectobacterium atrosepticum SCRI1043 2883608 YP_050272.1 CDS ECA2178 NC_004547.2 <2480847 2481182 D Partial CDS. Similar to several phage integrases including Escherichia coli prophage Cp4-57 integrase inta or slpa or intx or b2622 SWALL:INTA_ECOLI (SWALL:P32053) (413 aa) fasta scores: E(): 6.1e-17, 65.88% id in 85 aa, and to Yersinia pestis prophage integrase ypo1098 SWALL:Q8ZH15 (EMBL:AJ414146) (399 aa) fasta scores: E(): 1.4e-19, 70.11% id in 87 aa; prophage integrase (partial) <2480847..2481182 Pectobacterium atrosepticum SCRI1043 2883610 YP_050273.1 CDS ECA2179 NC_004547.2 2481464 2481994 D hypothetical protein 2481464..2481994 Pectobacterium atrosepticum SCRI1043 2883589 YP_050274.1 CDS ECA2180 NC_004547.2 2481997 2484267 D hypothetical protein 2481997..2484267 Pectobacterium atrosepticum SCRI1043 2883590 YP_050275.1 CDS ECA2181 NC_004547.2 2484489 2484836 R Similar to Bacteriophage P4 polarity suppression protein Psu SWALL:VPSU_BPP4 (SWALL:P05460) (190 aa) fasta scores: E(): 6.4e-14, 49.02% id in 102 aa, and to Salmonella typhi phage polarity suppression protein sty4825 SWALL:Q8Z108 (EMBL:AL627283) (188 aa) fasta scores: E(): 9.5e-15, 51.51% id in 99 aa; bacteriophage polarity suppression protein complement(2484489..2484836) Pectobacterium atrosepticum SCRI1043 2883591 YP_050276.1 CDS ECA2182 NC_004547.2 2485016 2486065 R Similar to Escherichia coli O157:H7 integrase protein for prophage cp-933i z0324 or ecs0289 SWALL:Q8X7K7 (EMBL:AE005203) (410 aa) fasta scores: E(): 6.8e-46, 40.35% id in 337 aa, and to Yersinia pestis integrase int or ypo0887 or y3271 SWALL:AAM86821 (EMBL:AJ414145) (404 aa) fasta scores: E(): 5.8e-48, 41.12% id in 338 aa; prophage integrase complement(2485016..2486065) Pectobacterium atrosepticum SCRI1043 2883564 YP_050277.1 CDS ECA2183 NC_004547.2 2486231 2487322 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(2486231..2487322) Pectobacterium atrosepticum SCRI1043 2883565 YP_050278.1 CDS pth NC_004547.2 2487452 2488039 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(2487452..2488039) Pectobacterium atrosepticum SCRI1043 2881867 YP_050279.1 CDS ECA2185 NC_004547.2 2488352 2488621 D YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein 2488352..2488621 Pectobacterium atrosepticum SCRI1043 2883566 YP_050280.1 CDS prs NC_004547.2 2488785 2489732 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(2488785..2489732) Pectobacterium atrosepticum SCRI1043 2882532 YP_050281.1 CDS ipk NC_004547.2 2489870 2490742 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(2489870..2490742) Pectobacterium atrosepticum SCRI1043 2882184 YP_050282.1 CDS lolB NC_004547.2 2490745 2491368 R Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB complement(2490745..2491368) Pectobacterium atrosepticum SCRI1043 2885581 YP_050283.1 CDS hemA NC_004547.2 2491599 2492855 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 2491599..2492855 Pectobacterium atrosepticum SCRI1043 2885594 YP_050284.1 CDS prfA NC_004547.2 2492889 2493971 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 2492889..2493971 Pectobacterium atrosepticum SCRI1043 2882306 YP_050285.1 CDS hemK NC_004547.2 2493971 2494816 D HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2493971..2494816 Pectobacterium atrosepticum SCRI1043 2882906 YP_050286.1 CDS sirB2 NC_004547.2 2494828 2495223 D Similar to Escherichia coli protein SirB2 or b1213 SWALL:SIB2_ECOLI (SWALL:Q46755) (130 aa) fasta scores: E(): 2.3e-16, 44.61% id in 130 aa, and to Salmonella typhimurium, and Salmonella typhi protein SirB2 or stm1774 or sty1899 SWALL:SIB2_SALTY (SWALL:Q9XCQ2) (129 aa) fasta scores: E(): 4.7e-20, 55% id in 120 aa; hypothetical protein 2494828..2495223 Pectobacterium atrosepticum SCRI1043 2884387 YP_050287.1 CDS sirB1 NC_004547.2 2495226 2496035 D Similar to Escherichia coli, and Escherichia coli O157:H7 protein SirB1 or b1214 or z1985 or ecs1719 SWALL:SIB1_ECOLI (SWALL:P20101) (269 aa) fasta scores: E(): 8.3e-71, 66.17% id in 269 aa; transcriptional regulator 2495226..2496035 Pectobacterium atrosepticum SCRI1043 2884386 YP_050288.1 CDS kdsA NC_004547.2 2496092 2496946 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 2496092..2496946 Pectobacterium atrosepticum SCRI1043 2884536 YP_050289.1 CDS ECA2195 NC_004547.2 2497077 2497340 R Similar to the C-terminal regions of many including Escherichia coli transposase insg for insertion sequence element IS4 InsG or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 1.8e-36, 69.23% id in 143 aa; transposase for insertion sequence element IS4 (partial) complement(join(2497077..2497340,2497344..>2497514)) Pectobacterium atrosepticum SCRI1043 2883567 YP_050290.1 CDS tnpA NC_004547.2 2497516 >2497770 R Partial CDS. Similar to the C-terminal regions of many transposases including Escherichia coli transposase for transposon Tn1721 TnpA SWALL:TNP9_ECOLI (SWALL:P51565) (988 aa) fasta scores: E(): 6.4e-25, 83.75% id in 80 aa; transposase transposon Tn1721 (partial) complement(2497516..>2497770) Pectobacterium atrosepticum SCRI1043 2884273 YP_050291.1 CDS ECA2198 NC_004547.2 <2497761 2498068 D Similar to the C-terminal region of Xanthomonas campestris VirB6 protein or xcc3294 SWALL:Q8P5P2 (EMBL:AE012446) (373 aa) fasta scores: E(): 0.14, 31.19% id in 109 aa; hypothetical protein join(<2497761..2497904,2497904..2498068) Pectobacterium atrosepticum SCRI1043 2883555 YP_050292.1 CDS ECA2199 NC_004547.2 2498108 2498629 D Similar to Xanthomonas campestris hypothetical protein Xcc3128 SWALL:Q8P649 (EMBL:AE012428) (182 aa) fasta scores: E(): 1.4e-09, 35.35% id in 181 aa; lipoprotein 2498108..2498629 Pectobacterium atrosepticum SCRI1043 2883556 YP_050293.1 CDS ECA2200 NC_004547.2 2498626 2499375 D Similar to Xanthomonas axonopodis hypothetical protein Xac0467 SWALL:Q8PQ61 (EMBL:AE011674) (265 aa) fasta scores: E(): 3.8e-27, 40.09% id in 217 aa; hypothetical protein 2498626..2499375 Pectobacterium atrosepticum SCRI1043 2883557 YP_050294.1 CDS ECA2201 NC_004547.2 2499415 2499981 R Similar to the C-terminal regions of several including Comamonas acidovorans Orf4 SWALL:Q8RS31 (EMBL:AB049198) (323 aa) fasta scores: E(): 1.3e-42, 81.2% id in 133 aa, and to Synechococcus elongatus Tll0382 protein tll0382 SWALL:BAC07934 (EMBL:AP005370) (330 aa) fasta scores: E(): 6.9e-22, 53.98% id in 113 aa; integrase complement(2499415..2499981) Pectobacterium atrosepticum SCRI1043 2883533 YP_050295.1 CDS insG NC_004547.2 2499998 >2500471 R Similar to the N-terminal regions of several transposases including Escherichia coli transposase InsG for insertion sequence element IS4 InsG or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 1.6e-46, 74.32% id in 148 aa, and to Shigella flexneri IS4 orf s0243 SWALL:Q9AFL8 (EMBL:AF348706) (439 aa) fasta scores: E(): 1.6e-46, 74.32% id in 148 aa; transposase for insertion sequence element IS4 (partial) complement(2499998..>2500471) Pectobacterium atrosepticum SCRI1043 2881278 YP_050296.1 CDS ECA2203 NC_004547.2 2500620 2501573 R Similar to Yersinia pestis exported protein ypo2305 or y2136 SWALL:Q8ZE77 (EMBL:AJ414151) (317 aa) fasta scores: E(): 2.4e-78, 69.9% id in 319 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1625 SWALL:AAN43208 (EMBL:AE015183) (314 aa) fasta scores: E(): 8.2e-74, 67.82% id in 317 aa; hypothetical protein complement(2500620..2501573) Pectobacterium atrosepticum SCRI1043 2883534 YP_050297.1 CDS pntA NC_004547.2 2502156 2503685 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 2502156..2503685 Pectobacterium atrosepticum SCRI1043 2883241 YP_050298.1 CDS pntB NC_004547.2 2503696 2505084 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 2503696..2505084 Pectobacterium atrosepticum SCRI1043 2883187 YP_050299.1 CDS ECA2206 NC_004547.2 2505289 2506239 R with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE complement(2505289..2506239) Pectobacterium atrosepticum SCRI1043 2883535 YP_050300.1 CDS fnr NC_004547.2 2506430 2507176 R Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator complement(2506430..2507176) Pectobacterium atrosepticum SCRI1043 2882538 YP_050301.1 CDS ogt NC_004547.2 2507444 2507977 R Similar to Escherichia coli, and Shigella flexneri methylated-DNA--protein-cysteine methyltransferase Ogt or b1335 or sf1835 SWALL:OGT_ECOLI (SWALL:P09168) (171 aa) fasta scores: E(): 2.8e-38, 59.76% id in 169 aa. Also similar to ECA2454 (40.331% id. in 181 aa overlap); methylated-DNA--protein-cysteine methyltransferase complement(2507444..2507977) Pectobacterium atrosepticum SCRI1043 2883543 YP_050302.1 CDS ECA2209 NC_004547.2 2508508 2509803 D Similar to Oceanobacillus iheyensis hypothetical conserved protein ob2083 SWALL:BAC14039 (EMBL:AP004600) (426 aa) fasta scores: E(): 1.9e-114, 62.97% id in 424 aa, and to Rhizobium meliloti oxidoreductase protein r00123 or smc04129 SWALL:Q92T57 (EMBL:AL591782) (433 aa) fasta scores: E(): 2.9e-46, 41.68% id in 427 aa; oxidoreductase 2508508..2509803 Pectobacterium atrosepticum SCRI1043 2883530 YP_050303.1 CDS ECA2210 NC_004547.2 2509912 2511231 D Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 5.9e-79, 49.29% id in 428 aa, and to Yersinia pestis sugar-binding protein ypo1719 or TogB or y1881 SWALL:AAM85448 (EMBL:AJ414150) (430 aa) fasta scores: E(): 2.2e-79, 49.52% id in 422 aa. Also similar to ECA2406(TogB) (50.117% id) and to ECA3551 (47.442% id); periplasmic-binding protein 2509912..2511231 Pectobacterium atrosepticum SCRI1043 2883531 YP_050304.1 CDS ECA2211 NC_004547.2 2511298 2511822 R copper-zinc superoxide dismutase complement(2511298..2511822) Pectobacterium atrosepticum SCRI1043 2883532 YP_050305.1 CDS ECA2212 NC_004547.2 2511876 2513105 R Similar to Vibrio cholerae cyclopropane-fatty-acyl-phospholipid synthase vc1122 SWALL:Q9KSY4 (EMBL:AE004192) (432 aa) fasta scores: E(): 3e-82, 55.76% id in 364 aa, and to Shewanella oneidensis cyclopropane-fatty-acyl-phospholipid synthase Cfa or so3379 SWALL:AAN56377 (EMBL:AE015774) (418 aa) fasta scores: E(): 3.1e-77, 49.75% id in 408 aa; cyclopropane-fatty-acyl-phospholipid synthase complement(2511876..2513105) Pectobacterium atrosepticum SCRI1043 2883527 YP_050306.1 CDS ECA2213 NC_004547.2 2513102 2513827 R Similar to Vibrio vulnificus conserved hypothetical protein vv12933 SWALL:AAO11265 (EMBL:AE016806) (255 aa) fasta scores: E(): 8.4e-49, 49.37% id in 241 aa, and to Pseudomonas putida conserved hypothetical protein pp2735 SWALL:AAN68343 (EMBL:AE016784) (269 aa) fasta scores: E(): 8.5e-32, 41.39% id in 244 aa; hypothetical protein complement(2513102..2513827) Pectobacterium atrosepticum SCRI1043 2883528 YP_050307.1 CDS ECA2214 NC_004547.2 2513820 2515088 R Similar to Vibrio cholerae hypothetical protein Vc1120 SWALL:Q9KSY6 (EMBL:AE004192) (426 aa) fasta scores: E(): 7.9e-99, 58.33% id in 420 aa, and to Shewanella oneidensis conserved hypothetical protein so3381 SWALL:AAN56379 (EMBL:AE015774) (416 aa) fasta scores: E(): 9.4e-90, 56.25% id in 416 aa; amine oxidoreductase complement(2513820..2515088) Pectobacterium atrosepticum SCRI1043 2883529 YP_050308.1 CDS ECA2215 NC_004547.2 2515094 2515801 R Similar to Vibrio vulnificus dehydrogenase vv12935 SWALL:AAO11267 (EMBL:AE016806) (241 aa) fasta scores: E(): 2.9e-42, 50.84% id in 236 aa, and to Pseudomonas putida oxidoreductase, short-chain dehydrogenase/reductase family pp2737 SWALL:AAN68345 (EMBL:AE016784) (250 aa) fasta scores: E(): 3.7e-28, 42.21% id in 244 aa; short-chain dehydrogenase complement(2515094..2515801) Pectobacterium atrosepticum SCRI1043 2883473 YP_050309.1 CDS ECA2216 NC_004547.2 2515807 2516286 R Similar to Vibrio vulnificus transcriptional regulator vv12936 SWALL:Q8D8N5 (EMBL:AE016806) (139 aa) fasta scores: E(): 7.7e-20, 43.28% id in 134 aa, and to Pseudomonas syringae conserved hypothetical protein pspto1120 SWALL:AAO54649 (EMBL:AE016859) (140 aa) fasta scores: E(): 3.5e-17, 38.97% id in 136 aa; hypothetical protein complement(2515807..2516286) Pectobacterium atrosepticum SCRI1043 2883474 YP_050310.1 CDS srfC NC_004547.2 2516544 2519006 R Similar to Salmonella typhimurium SrfC or stm1595 SWALL:Q9KIJ8 (EMBL:AF231758) (714 aa) fasta scores: E(): 4.2e-23, 30.06% id in 795 aa, and to Yersinia pestis virulence factor y2123 SWALL:AAM85685 (EMBL:AE013815) (846 aa) fasta scores: E(): 2.9e-65, 55.12% id in 849 aa; virulence factor complement(2516544..2519006) Pectobacterium atrosepticum SCRI1043 2884354 YP_050311.1 CDS srfB NC_004547.2 2519003 2521990 R Similar to Salmonella typhimurium SrfB or stm1594 SWALL:Q9KIJ9 (EMBL:AF231758) (993 aa) fasta scores: E(): 0, 57.47% id in 997 aa, and to Yersinia pestis virulence factor ypo2290 SWALL:Q8ZE92 (EMBL:AJ414151) (1023 aa) fasta scores: E(): 2.1e-214, 73.8% id in 1027 aa; virulence effector protein complement(2519003..2521990) Pectobacterium atrosepticum SCRI1043 2884359 YP_050312.1 CDS srfA NC_004547.2 2521993 2523372 R Similar to Salmonella typhimurium, and Salmonella typhi SrfA or sty1472 SWALL:Q9KIK0 (EMBL:AF231758) (399 aa) fasta scores: E(): 2.4e-16, 41.06% id in 431 aa, and to Yersinia pestis virulence factor y2121 SWALL:AAM85682 (EMBL:AE013815) (477 aa) fasta scores: E(): 4.2e-29, 51.02% id in 488 aa; virulence effector protein complement(2521993..2523372) Pectobacterium atrosepticum SCRI1043 2884358 YP_050313.1 CDS ECA2220 NC_004547.2 2523662 2524351 R Similar to Bacillus subtilis YoaJ SWALL:O34918 (EMBL:AF027868) (232 aa) fasta scores: E(): 4.2e-47, 53.61% id in 235 aa, and to the C-terminal region of Clavibacter michiganensis subsp. sepedonicus cellulase cela SWALL:Q9AF65 (EMBL:AY007311) (727 aa) fasta scores: E(): 2.6e-09, 30.52% id in 190 aa; cellulase complement(2523662..2524351) Pectobacterium atrosepticum SCRI1043 2883475 YP_050314.1 CDS osmC NC_004547.2 2524682 2525110 D Similar to Escherichia coli, and Shigella flexneri osmotically inducible protein C OsmC or b1482 or sf1743 SWALL:OSMC_ECOLI (SWALL:P23929) (142 aa) fasta scores: E(): 4.2e-45, 87.14% id in 140 aa; osmotically inducible protein C 2524682..2525110 Pectobacterium atrosepticum SCRI1043 2882725 YP_050315.1 CDS cybC NC_004547.2 2525399 2525785 D Similar to Escherichia coli, and Escherichia coli O157:H7 soluble cytochrome b562 precursor CybC or b4236 or z5846 or ecs5213 SWALL:C562_ECOLI (SWALL:P00192) (128 aa) fasta scores: E(): 2.6e-07, 30.46% id in 128 aa, and to Yersinia pestis probable soluble cytochrome b562 2 precursor CybC2 or CybC or ypo3694 or y0169 SWALL:C563_YERPE (SWALL:Q8ZAU2) (128 aa) fasta scores: E(): 4e-07, 31.25% id in 128 aa; soluble cytochrome b562 2525399..2525785 Pectobacterium atrosepticum SCRI1043 2883174 YP_050316.1 CDS ECA2223 NC_004547.2 2525893 2526447 D Similar to Streptomyces coelicolor TetR-family transcriptional regulatory protein sco4461 or scd65.04C SWALL:Q9F2S8 (EMBL:AL939120) (185 aa) fasta scores: E(): 3e-25, 42.68% id in 164 aa, and to Escherichia coli hypothetical protein ybjk or b0846 SWALL:YBJK_ECOLI (SWALL:P75811) (178 aa) fasta scores: E(): 5.6e-19, 38.69% id in 168 aa; TetR family transcriptional regulator 2525893..2526447 Pectobacterium atrosepticum SCRI1043 2883476 YP_050317.1 CDS ECA2224 NC_004547.2 2526583 2527779 D Similar to Salmonella typhimurium transport protein stm0868 SWALL:Q8ZQK6 (EMBL:AE008736) (403 aa) fasta scores: E(): 1.8e-64, 46.83% id in 395 aa, and to Escherichia coli hypothetical protein ybjj ybjj or b0845 SWALL:YBJJ_ECOLI (SWALL:P75810) (402 aa) fasta scores: E(): 9.3e-64, 46.26% id in 402 aa; transporter 2526583..2527779 Pectobacterium atrosepticum SCRI1043 2883461 YP_050318.1 CDS ECA2225 NC_004547.2 2527929 2528417 D Similar to Listeria monocytogenes hypothetical protein Lmo0624 SWALL:Q8Y9A8 (EMBL:AL591976) (147 aa) fasta scores: E(): 2.1e-11, 37.08% id in 151 aa, and to Bacillus subtilis YycN protein yycN SWALL:O32293 (EMBL:Z99124) (156 aa) fasta scores: E(): 2.5e-10, 31.41% id in 156 aa; acetyltransferase 2527929..2528417 Pectobacterium atrosepticum SCRI1043 2883462 YP_050319.1 CDS ECA2225A NC_004547.2 2528538 2528708 D hypothetical protein 2528538..2528708 Pectobacterium atrosepticum SCRI1043 2883463 YP_050320.1 CDS ECA2226 NC_004547.2 2528725 2530560 D Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 1.4e-48, 50.98% id in 355 aa, and to Ralstonia solanacearum methyl-accepting chemotaxis transmembrane protein rsc0606 or rs06104 SWALL:Q8Y1T3 (EMBL:AL646060) (617 aa) fasta scores: E(): 1.2e-54, 39.73% id in 594 aa; methyl-accepting chemotaxis protein 2528725..2530560 Pectobacterium atrosepticum SCRI1043 2883412 YP_050321.1 CDS ECA2227 NC_004547.2 2530749 2531648 D specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 2530749..2531648 Pectobacterium atrosepticum SCRI1043 2883413 YP_050322.1 CDS ECA2228 NC_004547.2 2531645 2531911 R Similar to Escherichia coli hypothetical protein yjbd or b4023 SWALL:YJBD_ECOLI (SWALL:P32685) (90 aa) fasta scores: E(): 1.2e-16, 65.9% id in 88 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein SWALL:AAO71585 (EMBL:AE016848) (90 aa) fasta scores: E(): 1.3e-16, 63.63% id in 88 aa; hypothetical protein complement(2531645..2531911) Pectobacterium atrosepticum SCRI1043 2883414 YP_050323.1 CDS ECA2229 NC_004547.2 2532270 2532398 D hypothetical protein 2532270..2532398 Pectobacterium atrosepticum SCRI1043 2883396 YP_050324.1 CDS ECA2230 NC_004547.2 2532528 2533646 R Similar to Escherichia coli O6 oxidoreductase c0409 SWALL:AAN78890 (EMBL:AE016756) (329 aa) fasta scores: E(): 3.6e-62, 56.27% id in 311 aa, and to Oceanobacillus iheyensis NADH-dependent flavin oxidoreductase ob3315 SWALL:BAC15271 (EMBL:AP004604) (373 aa) fasta scores: E(): 4.8e-55, 42.81% id in 369 aa; NADH-dependent flavin oxidoreductase complement(2532528..2533646) Pectobacterium atrosepticum SCRI1043 2883397 YP_050325.1 CDS ECA2231 NC_004547.2 2533659 2534552 R Similar to Escherichia coli O6 hypothetical protein ycjy c1801 SWALL:Q8FHQ8 (EMBL:AE016760) (310 aa) fasta scores: E(): 3.8e-49, 47.11% id in 295 aa, and to Vibrio parahaemolyticus hypothetical protein vp1677 SWALL:BAC59940 (EMBL:AP005078) (339 aa) fasta scores: E(): 1.9e-45, 46.23% id in 292 aa; hypothetical protein complement(2533659..2534552) Pectobacterium atrosepticum SCRI1043 2883398 YP_050326.1 CDS ECA2232 NC_004547.2 2534900 2535796 R Similar to Bradyrhizobium japonicum transcriptional regulatory protein blr5548 SWALL:BAC50813 (EMBL:AP005955) (297 aa) fasta scores: E(): 1.5e-69, 61.01% id in 295 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp1471 or rs03073 SWALL:Q8XQ15 (EMBL:AL646085) (297 aa) fasta scores: E(): 2.1e-64, 57.14% id in 294 aa; LysR family transcriptional regulator complement(2534900..2535796) Pectobacterium atrosepticum SCRI1043 2883347 YP_050327.1 CDS ECA2233 NC_004547.2 2535825 2536745 R Similar to uncultured bacterium esterase SWALL:Q9KIU0 (EMBL:AF223648) (438 aa) fasta scores: E(): 5.5e-34, 42.48% id in 306 aa, and to Clostridium acetobutylicum carboxyl esterase, a/b hydrolase cap0097 SWALL:Q97TK4 (EMBL:AE001438) (299 aa) fasta scores: E(): 1e-42, 42.12% id in 292 aa; hydrolase complement(2535825..2536745) Pectobacterium atrosepticum SCRI1043 2883348 YP_050328.1 CDS ECA2234 NC_004547.2 2536813 2537412 R Similar to Xanthomonas axonopodis hypothetical protein Xac2153 SWALL:Q8PKL8 (EMBL:AE011852) (196 aa) fasta scores: E(): 3.6e-35, 45.69% id in 186 aa, and to Saccharomyces cerevisiae hypothetical 22.0 kDa protein in hxt11-hxt8 intergenic region yjl217w or j0226 or hrc198 SWALL:YJV7_YEAST (SWALL:P40893) (198 aa) fasta scores: E(): 1.2e-33, 45.83% id in 192 aa; hypothetical protein complement(2536813..2537412) Pectobacterium atrosepticum SCRI1043 2883349 YP_050329.1 CDS ECA2235 NC_004547.2 2537430 2537795 R Similar to Pseudomonas putida conserved hypothetical protein pp2987 SWALL:AAN68595 (EMBL:AE016785) (187 aa) fasta scores: E(): 2.1e-33, 70.24% id in 121 aa, and to Rhizobium loti hypothetical protein Mll2592 SWALL:Q98I32 (EMBL:AP003000) (182 aa) fasta scores: E(): 6.4e-17, 49.56% id in 115 aa; transcriptional regulator complement(2537430..2537795) Pectobacterium atrosepticum SCRI1043 2883309 YP_050330.1 CDS ECA2235A NC_004547.2 <2538347 >2538544 D Similar to the C-terminal regions of several including Agrobacterium tumefaciens short-chain dehydrogenase atu5444 or agr_pat_651 SWALL:Q8UJN2 (EMBL:AE008965) (287 aa) fasta scores: E(): 7.5e-08, 50% id in 60 aa, and to Pseudomonas sp. short chain dehydrogenase orf65 SWALL:Q936Z5 (EMBL:U66917) (147 aa) fasta scores: E(): 3.2e-07, 50% id in 60 aa; short-chain dehydrogenase (partial) <2538347..>2538544 Pectobacterium atrosepticum SCRI1043 2883310 YP_050331.1 CDS ECA2236 NC_004547.2 2538647 2539090 D Similar to Pseudomonas aeruginosa hypothetical protein Pa2120 SWALL:Q9I1Z5 (EMBL:AE004639) (142 aa) fasta scores: E(): 7.7e-15, 43.41% id in 129 aa, and to Ralstonia solanacearum hypothetical protein rsp0317 or rs05451 SWALL:Q8XT00 (EMBL:AL646078) (147 aa) fasta scores: E(): 6.5e-12, 36.5% id in 126 aa; hypothetical protein 2538647..2539090 Pectobacterium atrosepticum SCRI1043 2883311 YP_050332.1 CDS flxA NC_004547.2 2539270 2539632 D Similar to Escherichia coli protein FlxA or b1566 SWALL:FLXA_ECOLI (SWALL:P77609) (110 aa) fasta scores: E(): 0.0012, 34.74% id in 118 aa, and to Shigella flexneri orf, conserved hypothetical protein sf2463 SWALL:AAN43970 (EMBL:AE015262) (113 aa) fasta scores: E(): 3.1e-06, 43.39% id in 106 aa; hypothetical protein 2539270..2539632 Pectobacterium atrosepticum SCRI1043 2882536 YP_050333.1 CDS ECA2238 NC_004547.2 2539822 2540028 R Similar to Rhizobium loti hypothetical protein Msl2237 SWALL:Q98IV1 (EMBL:AP002999) (74 aa) fasta scores: E(): 2.4e-18, 67.64% id in 68 aa; hypothetical protein complement(2539822..2540028) Pectobacterium atrosepticum SCRI1043 2883312 YP_050334.1 CDS ECA2239 NC_004547.2 2540218 2540505 D Similar to Erwinia pyrifoliae conserved hypothetical protein SWALL:AAN04552 (EMBL:AY123045) (94 aa) fasta scores: E(): 2.6e-22, 66.31% id in 95 aa, and to Yersinia pestis hypothetical protein ypo1157 or y3025 SWALL:Q8ZGW6 (EMBL:AJ414146) (81 aa) fasta scores: E(): 2.7e-16, 63.51% id in 74 aa; hypothetical protein 2540218..2540505 Pectobacterium atrosepticum SCRI1043 2883225 YP_050335.1 CDS ECA2240 NC_004547.2 2540511 2541806 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein yddw precursor yddw or b1491 or z2217 or ecs2096 or sf1736 SWALL:YDDW_ECOLI (SWALL:P76130) (439 aa) fasta scores: E(): 1.2e-134, 77.33% id in 428 aa, and to Yersinia pestis lipoprotein ypo2538 or y1649 SWALL:Q8ZDM4 (EMBL:AJ414152) (427 aa) fasta scores: E(): 6.7e-102, 61.03% id in 426 aa; lipoprotein 2540511..2541806 Pectobacterium atrosepticum SCRI1043 2883226 YP_050336.1 CDS ECA2241 NC_004547.2 2541855 2542190 R Similar to Yersinia pestis hypothetical protein y5172 or y1074 or ypmt1.69 SWALL:Q9ZGZ3 (EMBL:AF074611) (108 aa) fasta scores: E(): 1.5e-24, 61.9% id in 105 aa, and to Salmonella typhimurium inner membrane protein stm2507 SWALL:Q8ZN63 (EMBL:AE008813) (78 aa) fasta scores: E(): 3e-09, 60.31% id in 63 aa; hypothetical protein complement(2541855..2542190) Pectobacterium atrosepticum SCRI1043 2883227 YP_050337.1 CDS ECA2242 NC_004547.2 2542221 2542454 R Similar to Yersinia pestis hypothetical protein Ypmt1.68A ypmt1.68A SWALL:Q9RIC5 (EMBL:AL117211) (75 aa) fasta scores: E(): 4e-22, 84% id in 75 aa, and to Xanthomonas axonopodis hypothetical protein Xac0080 SWALL:Q8PR83 (EMBL:AE011631) (85 aa) fasta scores: E(): 0.0015, 38.46% id in 78 aa; hypothetical protein complement(2542221..2542454) Pectobacterium atrosepticum SCRI1043 2883206 YP_050338.1 CDS dat NC_004547.2 2542867 2544249 D catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 2542867..2544249 Pectobacterium atrosepticum SCRI1043 2885141 YP_050339.1 CDS ddc NC_004547.2 2544268 2545785 D Similar to Acinetobacter baumannii L-2,4-diaminobutyrate decarboxylase Ddc SWALL:DDC_ACIBA (SWALL:Q43908) (510 aa) fasta scores: E(): 3.1e-101, 54.06% id in 492 aa, and to Enterobacter aerogenes L-2,4-diaminobutyrate decarboxylase Ddc SWALL:Q9S0P8 (EMBL:AB032468) (490 aa) fasta scores: E(): 2.4e-161, 83.77% id in 487 aa; L-2,4-diaminobutyrate decarboxylase 2544268..2545785 Pectobacterium atrosepticum SCRI1043 2884754 YP_050340.1 CDS ECA2245 NC_004547.2 2545857 2546087 R 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase complement(2545857..2546087) Pectobacterium atrosepticum SCRI1043 2883207 YP_050341.1 CDS ECA2246 NC_004547.2 2546335 2547111 D Similar to Escherichia coli O157:H7 hypothetical protein z0443 or ecs0400 SWALL:Q8X682 (EMBL:AE005214) (262 aa) fasta scores: E(): 7.5e-55, 53.1% id in 258 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62260 (EMBL:AF440524) (256 aa) fasta scores: E(): 3e-53, 54.51% id in 255 aa; hypothetical protein 2546335..2547111 Pectobacterium atrosepticum SCRI1043 2883208 YP_050342.1 CDS ECA2247 NC_004547.2 2547155 2548117 D Similar to Escherichia coli O157:H7 AraC-like transcriptional regulator z0442 or ecs0399 SWALL:Q8X683 (EMBL:AE005214) (317 aa) fasta scores: E(): 1.5e-74, 57.64% id in 314 aa, and to Pseudomonas aeruginosa transcriptional regulator SWALL:AAN62262 (EMBL:AF440524) (332 aa) fasta scores: E(): 7.5e-68, 55.01% id in 309 aa; AraC family transcriptional regulator 2547155..2548117 Pectobacterium atrosepticum SCRI1043 2883133 YP_050343.1 CDS ECA2248 NC_004547.2 2548323 2549147 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2548323..2549147 Pectobacterium atrosepticum SCRI1043 2883134 YP_050344.1 CDS ECA2249 NC_004547.2 2549178 2550395 D Similar to Halobacterium sp. Vng0271C SWALL:Q9HSE4 (EMBL:AE004989) (364 aa) fasta scores: E(): 4.4e-26, 33.24% id in 364 aa; hypothetical protein 2549178..2550395 Pectobacterium atrosepticum SCRI1043 2883135 YP_050345.1 CDS ECA2250 NC_004547.2 2550693 2551877 D Similar to Xanthomonas campestris histidinol-phosphate aminotransferase hisc or xcc3275 SWALL:Q8P5R1 (EMBL:AE012444) (399 aa) fasta scores: E(): 2.9e-27, 31.33% id in 367 aa, and to Pseudomonas fluorescens aminotransferase qbsB SWALL:AAL65284 (EMBL:AY072690) (363 aa) fasta scores: E(): 1.1e-26, 32.2% id in 354 aa; aminotransferase 2550693..2551877 Pectobacterium atrosepticum SCRI1043 2883024 YP_050346.1 CDS ECA2251 NC_004547.2 2551896 2552087 D hypothetical protein 2551896..2552087 Pectobacterium atrosepticum SCRI1043 2883025 YP_050347.1 CDS ECA2252 NC_004547.2 2552084 2552833 D NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase 2552084..2552833 Pectobacterium atrosepticum SCRI1043 2883026 YP_050348.1 CDS ECA2253 NC_004547.2 2553108 2553458 D Similar to Yersinia pseudotuberculosis hypothetical 14.2 kDa protein orf9 SWALL:Q93AP0 (EMBL:AF418982) (124 aa) fasta scores: E(): 8.4e-19, 45.52% id in 123 aa, and to Salmonella typhimurium, and Salmonella typhi periplasmic protein ynfb or stm1503 or sty1560 SWALL:Q8XEU2 (EMBL:AE008765) (113 aa) fasta scores: E(): 3.1e-18, 52.52% id in 99 aa; hypothetical protein 2553108..2553458 Pectobacterium atrosepticum SCRI1043 2885647 YP_050349.1 CDS ECA2254 NC_004547.2 2553611 2554228 D lipoprotein 2553611..2554228 Pectobacterium atrosepticum SCRI1043 2885648 YP_050350.1 CDS ECA2255 NC_004547.2 2554334 2554633 D Similar to Escherichia coli O157:H7 orf, hypothetical protein z2573 or ecs2292 SWALL:Q8X798 (EMBL:AE005382) (102 aa) fasta scores: E(): 1.2e-14, 55.44% id in 101 aa, and to Salmonella typhimurium outer membrane protein ynfd or stm1500 SWALL:Q8ZPJ5 (EMBL:AE008765) (102 aa) fasta scores: E(): 5.2e-14, 56.98% id in 93 aa; hypothetical protein 2554334..2554633 Pectobacterium atrosepticum SCRI1043 2885649 YP_050351.1 CDS ECA2256 NC_004547.2 2554698 2556170 R Similar to Listeria monocytogenes hypothetical protein Lmo0981 SWALL:Q8Y8C7 (EMBL:AL591977) (491 aa) fasta scores: E(): 1.8e-54, 36.23% id in 483 aa, and to Clostridium acetobutylicum permease, mdr related cap0131 SWALL:Q97TH0 (EMBL:AE001438) (489 aa) fasta scores: E(): 2.2e-51, 34.31% id in 475 aa; transporter complement(2554698..2556170) Pectobacterium atrosepticum SCRI1043 2885650 YP_050352.1 CDS bioD NC_004547.2 2556274 2556939 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(2556274..2556939) Pectobacterium atrosepticum SCRI1043 2882954 YP_050353.1 CDS ECA2258 NC_004547.2 2557073 2558290 R Similar to Escherichia coli Mlc protein Mlc or b1594 SWALL:MLC_ECOLI (SWALL:P50456) (406 aa) fasta scores: E(): 1.3e-113, 71.92% id in 406 aa, and to Yersinia pestis rok family transcriptional regulatory protein mlc or ypo2268 SWALL:Q8ZEB4 (EMBL:AJ414151) (405 aa) fasta scores: E(): 7.4e-131, 81.72% id in 405 aa; transcriptional regulator complement(2557073..2558290) Pectobacterium atrosepticum SCRI1043 2882955 YP_050354.1 CDS ECA2259 NC_004547.2 2558525 2559421 R Similar to Salmonella typhi regulatory protein sty1578 SWALL:Q8Z6X7 (EMBL:AL627270) (299 aa) fasta scores: E(): 3.5e-66, 60.81% id in 296 aa, and to Yersinia pestis transcriptional regulator LysR-type y2109 SWALL:AAM85672 (EMBL:AE013813) (307 aa) fasta scores: E(): 1e-72, 69.61% id in 283 aa; LysR family transcriptional regulator complement(2558525..2559421) Pectobacterium atrosepticum SCRI1043 2882956 YP_050355.1 CDS ECA2260 NC_004547.2 2559536 2560804 D Similar to Escherichia coli hypothetical transport protein ynfm or b1596 SWALL:YNFM_ECOLI (SWALL:P43531) (417 aa) fasta scores: E(): 3.4e-109, 71.29% id in 411 aa, and to Salmonella typhimurium, and Salmonella typhi mfs familty transport protein ynfm or stm1486 or sty1579 SWALL:Q8XH12 (EMBL:AE008764) (417 aa) fasta scores: E(): 2.3e-108, 72.23% id in 407 aa; transporter 2559536..2560804 Pectobacterium atrosepticum SCRI1043 2882832 YP_050356.1 CDS tus NC_004547.2 2560976 2561911 D binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 2560976..2561911 Pectobacterium atrosepticum SCRI1043 2884228 YP_050357.1 CDS fumC NC_004547.2 2561970 2563367 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(2561970..2563367) Pectobacterium atrosepticum SCRI1043 2883459 YP_050358.1 CDS manA NC_004547.2 2563607 2564779 D Similar to Escherichia coli mannose-6-phosphate isomerase ManA or Pmi or b1613 SWALL:MANA_ECOLI (SWALL:P00946) (391 aa) fasta scores: E(): 1e-110, 71.28% id in 390 aa; mannose-6-phosphate isomerase 2563607..2564779 Pectobacterium atrosepticum SCRI1043 2881336 YP_050359.1 CDS ECA2264 NC_004547.2 2564898 2566448 D Similar to Escherichia coli O6 hypothetical protein ydga or c2006 SWALL:AAN80466 (EMBL:AE016761) (502 aa) fasta scores: E(): 3.5e-65, 38.67% id in 512 aa, and to Shigella flexneri orf, conserved hypothetical protein ydga or sf1637 SWALL:AAN43220 (EMBL:AE015185) (502 aa) fasta scores: E(): 3.5e-65, 38.67% id in 512 aa; hypothetical protein 2564898..2566448 Pectobacterium atrosepticum SCRI1043 2882833 YP_050360.1 CDS ECA2265 NC_004547.2 2566550 2567527 D Similar to Pseudomonas resinovorans efflux pump SWALL:BAC41699 (EMBL:AB088420) (319 aa) fasta scores: E(): 4.4e-44, 44.08% id in 313 aa, and to Pseudomonas putida transporter, bile acid/na+ symporter family pp0670 SWALL:AAN66295 (EMBL:AE016776) (317 aa) fasta scores: E(): 6.3e-48, 46.45% id in 310 aa; hypothetical protein 2566550..2567527 Pectobacterium atrosepticum SCRI1043 2882834 YP_050361.1 CDS add NC_004547.2 2567649 2568662 D catalyzes the formation of inosine from adenosine; adenosine deaminase 2567649..2568662 Pectobacterium atrosepticum SCRI1043 2883901 YP_050362.1 CDS ECA2267 NC_004547.2 2568764 2569222 R Similar to Brucella suis conserved hypothetical protein br1163 SWALL:AAN30083 (EMBL:AE014417) (164 aa) fasta scores: E(): 2.7e-30, 58.06% id in 155 aa, and to Ralstonia solanacearum hypothetical signal peptide protein rsp1443 or rs03100 SWALL:Q8XQ43 (EMBL:AL646084) (158 aa) fasta scores: E(): 6.4e-26, 56.81% id in 132 aa; hypothetical protein complement(2568764..2569222) Pectobacterium atrosepticum SCRI1043 2882774 YP_050363.1 CDS ECA2268 NC_004547.2 2569453 2570445 R Similar to Yersinia pestis membrane protein ypo2260 or y2102 SWALL:Q8ZEC0 (EMBL:AJ414151) (342 aa) fasta scores: E(): 2e-105, 85.84% id in 325 aa, and to Escherichia coli hypothetical protein yfeh or b2410 SWALL:YFEH_ECOLI (SWALL:P39836) (332 aa) fasta scores: E(): 9.4e-79, 66.97% id in 324 aa; sodium bile acid symporter complement(2569453..2570445) Pectobacterium atrosepticum SCRI1043 2882775 YP_050364.2 CDS ECA2269 NC_004547.2 2570592 2571638 R Similar to Shigella flexneri orf, conserved hypothetical protein ydgj or sf1649 SWALL:AAN43231 (EMBL:AE015186) (359 aa) fasta scores: E(): 2.1e-97, 70.57% id in 350 aa, and to Escherichia coli hypothetical oxidoreductase ydgj or b1624 SWALL:YDGJ_ECOLI (SWALL:P77376) (346 aa) fasta scores: E(): 1.5e-96, 71.01% id in 345 aa; oxidoreductase complement(2570592..2571638) Pectobacterium atrosepticum SCRI1043 2882776 YP_050365.1 CDS araC NC_004547.2 2571753 2572685 R positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC complement(2571753..2572685) Pectobacterium atrosepticum SCRI1043 2884160 YP_050366.1 CDS araH NC_004547.2 2572751 2573737 R Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter permease complement(2572751..2573737) Pectobacterium atrosepticum SCRI1043 2884158 YP_050367.1 CDS araG NC_004547.2 2573756 2575279 R Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter ATP-binding protein complement(2573756..2575279) Pectobacterium atrosepticum SCRI1043 2884157 YP_050368.1 CDS araF NC_004547.2 2575376 2576359 R Similar to Escherichia coli L-arabinose-binding periplasmic protein precursor AraF or b1901 SWALL:ARAF_ECOLI (SWALL:P02924) (329 aa) fasta scores: E(): 1.4e-107, 89.87% id in 326 aa; L-arabinose-binding periplasmic protein complement(2575376..2576359) Pectobacterium atrosepticum SCRI1043 2884162 YP_050369.1 CDS araB NC_004547.2 2576733 2578418 D catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 2576733..2578418 Pectobacterium atrosepticum SCRI1043 2884165 YP_050370.1 CDS araA NC_004547.2 2578455 2579960 D catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 2578455..2579960 Pectobacterium atrosepticum SCRI1043 2884164 YP_050371.1 CDS rnfA NC_004547.2 2580340 2580921 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 electron transport complex protein RnfA or b1627 or c2019 or z2633 or ecs2336 SWALL:RNFA_ECOLI (SWALL:P76181) (193 aa) fasta scores: E(): 1.3e-58, 80.31% id in 193 aa, and to Yersinia pestis electron transport complex protein RnfA or ypo2246 or y2087 SWALL:RNFA_YERPE (SWALL:Q8ZEC8) (193 aa) fasta scores: E(): 4.1e-60, 81.86% id in 193 aa; Na(+)-translocating NADH-quinone reductase subunit E 2580340..2580921 Pectobacterium atrosepticum SCRI1043 2885038 YP_050372.1 CDS rnfB NC_004547.2 2580921 2581499 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2580921..2581499 Pectobacterium atrosepticum SCRI1043 2885039 YP_050373.1 CDS rnfC NC_004547.2 2581492 2583573 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2581492..2583573 Pectobacterium atrosepticum SCRI1043 2885040 YP_050374.1 CDS rnfD NC_004547.2 2583574 2584629 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2583574..2584629 Pectobacterium atrosepticum SCRI1043 2885041 YP_050375.1 CDS rnfG NC_004547.2 2584640 2585269 D part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2584640..2585269 Pectobacterium atrosepticum SCRI1043 2885036 YP_050376.1 CDS rnfE NC_004547.2 2585266 2585973 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit 2585266..2585973 Pectobacterium atrosepticum SCRI1043 2885035 YP_050377.1 CDS nth NC_004547.2 2585970 2586605 D DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III 2585970..2586605 Pectobacterium atrosepticum SCRI1043 2885415 YP_050378.1 CDS tppB NC_004547.2 2587267 2588739 D mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; tripeptide transporter permease 2587267..2588739 Pectobacterium atrosepticum SCRI1043 2882768 YP_050379.1 CDS cysB NC_004547.2 2588846 2589820 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(2588846..2589820) Pectobacterium atrosepticum SCRI1043 2882243 YP_050380.1 CDS ECA2285 NC_004547.2 2589913 2590290 D hypothetical protein 2589913..2590290 Pectobacterium atrosepticum SCRI1043 2882769 YP_050381.1 CDS topA NC_004547.2 2590532 2593132 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(2590532..2593132) Pectobacterium atrosepticum SCRI1043 2884261 YP_050382.1 CDS ECA2287 NC_004547.2 2593459 2593728 D Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein SWALL:AAO69255 (EMBL:AE016839) (83 aa) fasta scores: E(): 3.7e-19, 66.26% id in 83 aa, and to Yersinia pestis hypothetical protein ypo2217 ypo2217 or y2058 SWALL:Q8ZEF6 (EMBL:AJ414151) (83 aa) fasta scores: E(): 5e-19, 71.42% id in 77 aa; hypothetical protein 2593459..2593728 Pectobacterium atrosepticum SCRI1043 2882770 YP_050383.2 CDS sohB NC_004547.2 2593787 2594833 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(2593787..2594833) Pectobacterium atrosepticum SCRI1043 2884374 YP_050384.1 CDS ECA2289 NC_004547.2 2595189 2595950 D Similar to Yersinia pestis short chain dehydrogenase ypo2215 SWALL:Q8ZEF8 (EMBL:AJ414151) (253 aa) fasta scores: E(): 4.9e-73, 75.49% id in 253 aa, and to Salmonella typhimurium, and Salmonella typhi oxoacyl- ycik or stm1717 or sty1333 SWALL:Q8XGU5 (EMBL:AE008776) (253 aa) fasta scores: E(): 1.2e-71, 74.3% id in 253 aa; short chain dehydrogenase 2595189..2595950 Pectobacterium atrosepticum SCRI1043 2881687 YP_050385.1 CDS btuR NC_004547.2 2595969 2596559 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 2595969..2596559 Pectobacterium atrosepticum SCRI1043 2882298 YP_050386.1 CDS ECA2291 NC_004547.2 2596643 2597527 R catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B complement(2596643..2597527) Pectobacterium atrosepticum SCRI1043 2881688 YP_050387.1 CDS ECA2292 NC_004547.2 2597688 2598308 R Similar to Yersinia pestis hypothetical protein ypo2212 or y2053 SWALL:Q8ZEG1 (EMBL:AJ414151) (206 aa) fasta scores: E(): 8.9e-67, 85.36% id in 205 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein SWALL:AAO69260 (EMBL:AE016839) (206 aa) fasta scores: E(): 4.7e-61, 77.67% id in 206 aa; hypothetical protein complement(2597688..2598308) Pectobacterium atrosepticum SCRI1043 2881689 YP_050388.1 CDS trpH NC_004547.2 2598460 2599344 R Similar to Salmonella typhimurium protein TrpH or stm1721 SWALL:TRPH_SALTY (SWALL:O54453) (293 aa) fasta scores: E(): 1.3e-72, 68.75% id in 272 aa, and to Escherichia coli protein TrpH or b1266 SWALL:TRPH_ECOLI (SWALL:P77766) (293 aa) fasta scores: E(): 6.4e-73, 68.75% id in 272 aa; phosphoesterase complement(2598460..2599344) Pectobacterium atrosepticum SCRI1043 2884236 YP_050389.1 CDS ECA2294 NC_004547.2 2599460 2601298 R Similar to Pseudomonas putida beta-(1-3)-glucosyl transferase, pp1526 SWALL:AAN67147 (EMBL:AE016779) (863 aa) fasta scores: E(): 2.2e-39, 32.08% id in 455 aa, and to Synechococcus elongatus cellulose synthase tll0007 SWALL:BAC07560 (EMBL:AP005369) (736 aa) fasta scores: E(): 2.9e-18, 26.26% id in 552 aa; glycosyl transferase family protein complement(2599460..2601298) Pectobacterium atrosepticum SCRI1043 2881690 YP_050390.1 CDS ECA2295 NC_004547.2 2601617 2602654 D Similar to Pseudomonas sp. 61-3 PhbR SWALL:Q9Z3Y6 (EMBL:AB014757) (379 aa) fasta scores: E(): 2.4e-41, 35.01% id in 337 aa, and to Azotobacter sp. FA8 PhaR protein PhaR SWALL:Q8KRE8 (EMBL:AJ496234) (369 aa) fasta scores: E(): 7.9e-33, 31.36% id in 338 aa; AraC family transcriptional regulator 2601617..2602654 Pectobacterium atrosepticum SCRI1043 2881875 YP_050391.1 CDS trpE NC_004547.2 2602958 2604520 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2602958..2604520 Pectobacterium atrosepticum SCRI1043 2884240 YP_050392.1 CDS trpG NC_004547.2 2604520 2605098 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 2604520..2605098 Pectobacterium atrosepticum SCRI1043 2884235 YP_050393.2 CDS trpD NC_004547.2 2605182 2606180 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2605182..2606180 Pectobacterium atrosepticum SCRI1043 2884239 YP_050394.1 CDS trpC NC_004547.2 2606188 2607555 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 2606188..2607555 Pectobacterium atrosepticum SCRI1043 2884238 YP_050395.1 CDS trpB NC_004547.2 2607572 2608762 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2607572..2608762 Pectobacterium atrosepticum SCRI1043 2884243 YP_050396.1 CDS trpA NC_004547.2 2608762 2609568 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2608762..2609568 Pectobacterium atrosepticum SCRI1043 2884242 YP_050397.1 CDS ECA2302 NC_004547.2 2609954 2610685 D Similar to Erwinia chrysanthemi oligogalacturonate-specific porin KdgM precursor kdgM SWALL:KDGM_ERWCH (SWALL:Q934G3) (236 aa) fasta scores: E(): 9.9e-56, 58.84% id in 243 aa. Also similar to ECA2407 (KdgM) (59.259% id).; oligogalacturonate-specific porin 2609954..2610685 Pectobacterium atrosepticum SCRI1043 2881876 YP_050398.1 CDS ompW NC_004547.2 2610838 2611473 R receptor for colicin S4; outer membrane protein W complement(2610838..2611473) Pectobacterium atrosepticum SCRI1043 2883315 YP_050399.1 CDS ECA2304 NC_004547.2 2611538 2611729 R Similar to Amsacta moorei entomopoxvirus Amv188 amv188 SWALL:Q9EML7 (EMBL:AF250284) (60 aa) fasta scores: E(): 1.4, 43.9% id in 41 aa; hypothetical protein complement(2611538..2611729) Pectobacterium atrosepticum SCRI1043 2881877 YP_050400.1 CDS ECA2305 NC_004547.2 2611821 2612573 D Similar to Yersinia pestis membrane protein ypo2199 or y2042 SWALL:Q8ZEH4 (EMBL:AJ414151) (256 aa) fasta scores: E(): 8.8e-50, 55.42% id in 249 aa, and to Salmonella typhimurium inner membrane protein ycic or stm1734 SWALL:Q8ZP49 (EMBL:AE008777) (247 aa) fasta scores: E(): 9.6e-49, 55.82% id in 249 aa; hypothetical protein 2611821..2612573 Pectobacterium atrosepticum SCRI1043 2882486 YP_050401.1 CDS ECA2306 NC_004547.2 2612727 2614289 D Similar to Shigella flexneri orf, hypothetical protein sf1608 SWALL:AAN43192 (EMBL:AE015182) (345 aa) fasta scores: E(): 1.1e-57, 55.21% id in 326 aa, and to Salmonella typhi possible integrase sty3193 SWALL:Q8Z3Y1 (EMBL:AL627277) (548 aa) fasta scores: E(): 2.6e-09, 30.68% id in 528 aa; phage integrase 2612727..2614289 Pectobacterium atrosepticum SCRI1043 2882487 YP_050402.1 CDS ECA2307 NC_004547.2 2614333 2614647 D Similar to an internal region of Bacteriophage T7 protein kinase 0.7 SWALL:KIPA_BPT7 (SWALL:) (359 aa) fasta scores: E(): 0.08, 34% id in 100 aa; phage-like protein 2614333..2614647 Pectobacterium atrosepticum SCRI1043 2882488 YP_050403.1 CDS ECA2308 NC_004547.2 2614681 2615379 D Similar to Culex nigripalpus baculovirus Cun001 bro protein, atp_gtp_a motif, similar to acmnpv orf 2 cun001 SWALL:Q919R4 (EMBL:AF403738) (593 aa) fasta scores: E(): 0.047, 23.98% id in 246 aa, and to Spodoptera frugiperda ascovirus 1 av1-bro-l10 protein SWALL:Q8JJX7 (EMBL:AJ312699) (268 aa) fasta scores: E(): 0.092, 23.92% id in 209 aa; phage-like protein 2614681..2615379 Pectobacterium atrosepticum SCRI1043 2881822 YP_050404.1 CDS ECA2309 NC_004547.2 2616138 2616857 D Similar to Bacteriophage HK620 DNA-binding protein RoI roI SWALL:Q9AZ12 (EMBL:AF335538) (240 aa) fasta scores: E(): 4, 24.53% id in 216 aa, and to Shigella flexneri orf, partial conserved hypothetical protein sf2861 SWALL:AAN44347 (EMBL:AE015300) (248 aa) fasta scores: E(): 2.1e-49, 58.92% id in 241 aa; phage-like protein 2616138..2616857 Pectobacterium atrosepticum SCRI1043 2881823 YP_050405.1 CDS ECA2310 NC_004547.2 2616854 2617060 D hypothetical protein 2616854..2617060 Pectobacterium atrosepticum SCRI1043 2881824 YP_050406.1 CDS ECA2311 NC_004547.2 2617183 2617593 D Similar to Vibrio cholerae orf28 SWALL:Q9L984 (EMBL:AF179596) (135 aa) fasta scores: E(): 1.6, 30.39% id in 102 aa, and to Salmonella typhi hypothetical protein Sty3189 sty3189 SWALL:Q8Z3Y4 (EMBL:AL627277) (163 aa) fasta scores: E(): 1.2, 25.58% id in 129 aa; hypothetical protein 2617183..2617593 Pectobacterium atrosepticum SCRI1043 2881656 YP_050407.1 CDS ECA2312 NC_004547.2 2617692 2618834 D Weakly similar to Shigella flexneri orf, conserved hypothetical protein sf2859 SWALL:AAN44345 (EMBL:AE015300) (329 aa) fasta scores: E(): 9.8e-18, 30.19% id in 308 aa, and to Salmonella typhi hypothetical protein Sty3188 sty3188 SWALL:Q8Z3Y5 (EMBL:AL627277) (327 aa) fasta scores: E(): 5.9e-08, 30.19% id in 308 aa; hypothetical protein 2617692..2618834 Pectobacterium atrosepticum SCRI1043 2881657 YP_050408.1 CDS ispZ NC_004547.2 2619430 2619996 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 2619430..2619996 Pectobacterium atrosepticum SCRI1043 2881578 YP_050409.1 CDS ECA2314 NC_004547.2 2620019 2620441 D YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 2620019..2620441 Pectobacterium atrosepticum SCRI1043 2881658 YP_050410.1 CDS tonB NC_004547.2 2620555 2621313 R membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transport protein TonB complement(2620555..2621313) Pectobacterium atrosepticum SCRI1043 2884265 YP_050411.1 CDS ECA2316 NC_004547.2 2621565 2621861 D Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein ycii or b1251 or c1716 or sf1254 SWALL:YCII_ECOLI (SWALL:P31070) (98 aa) fasta scores: E(): 7.2e-27, 75.51% id in 98 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein ycii or stm1738 or sty1313 SWALL:Q8XH04 (EMBL:AE008777) (98 aa) fasta scores: E(): 4.4e-26, 72.44% id in 98 aa; hypothetical protein 2621565..2621861 Pectobacterium atrosepticum SCRI1043 2881668 YP_050412.1 CDS ECA2317 NC_004547.2 2621870 2623666 D Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 2.1e-47, 31.81% id in 528 aa, and to Yersinia pestis methyl-accepting chemotaxis protein y3190 SWALL:AAM86740 (EMBL:AE013920) (566 aa) fasta scores: E(): 8e-81, 47.86% id in 516 aa; methyl-accepting chemotaxis protein 2621870..2623666 Pectobacterium atrosepticum SCRI1043 2881669 YP_050413.1 CDS cls NC_004547.2 2624113 2625573 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2624113..2625573 Pectobacterium atrosepticum SCRI1043 2884955 YP_050414.1 CDS ECA2319 NC_004547.2 2625646 2625969 D highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 2625646..2625969 Pectobacterium atrosepticum SCRI1043 2881670 YP_050415.1 CDS oppF NC_004547.2 2626058 2627092 R Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppF or stm1742 SWALL:OPPF_SALTY (SWALL:P08007) (334 aa) fasta scores: E(): 1.9e-108, 85.88% id in 333 aa; oligopeptide transport ATP-binding protein complement(2626058..2627092) Pectobacterium atrosepticum SCRI1043 2885559 YP_050416.1 CDS oppD NC_004547.2 2627089 2628084 R Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD or stm1743 SWALL:OPPD_SALTY (SWALL:P04285) (335 aa) fasta scores: E(): 3.4e-102, 86.29% id in 321 aa; oligopeptide transporter ATP-binding protein complement(2627089..2628084) Pectobacterium atrosepticum SCRI1043 2882979 YP_050417.1 CDS oppC NC_004547.2 2628096 2629004 R Similar to Salmonella typhimurium oligopeptide transport system permease protein OppC or stm1744 SWALL:OPPC_SALTY (SWALL:P08006) (302 aa) fasta scores: E(): 8.6e-101, 86.09% id in 302 aa; oligopeptide transport system permease complement(2628096..2629004) Pectobacterium atrosepticum SCRI1043 2882978 YP_050418.1 CDS oppB NC_004547.2 2629016 2629936 R Similar to Salmonella typhimurium oligopeptide transport system permease protein OppB or stm1745 SWALL:OPPB_SALTY (SWALL:P08005) (306 aa) fasta scores: E(): 2e-103, 90.52% id in 306 aa; oligopeptide transporter permease complement(2629016..2629936) Pectobacterium atrosepticum SCRI1043 2882977 YP_050419.1 CDS oppA1 NC_004547.2 2629990 2631627 R Similar to Salmonella typhimurium periplasmic oligopeptide-binding protein precursor OppA or stm1746 SWALL:OPPA_SALTY (SWALL:P06202) (543 aa) fasta scores: E(): 3.2e-174, 76.33% id in 545 aa. Also highly similar to ECA2325 80.784% id; periplasmic oligopeptide-binding protein complement(2629990..2631627) Pectobacterium atrosepticum SCRI1043 2883252 YP_050420.1 CDS oppA2 NC_004547.2 2631819 2633417 R Similar to Salmonella typhimurium periplasmic oligopeptide-binding protein precursor OppA or stm1746 SWALL:OPPA_SALTY (SWALL:P06202) (543 aa) fasta scores: E(): 4.8e-173, 76.44% id in 535 aa. Also highly similar to ECA2324 80.784% id; periplasmic oligopeptide-binding protein complement(2631819..2633417) Pectobacterium atrosepticum SCRI1043 2883253 YP_050421.1 CDS adhE NC_004547.2 2634501 2637176 D Similar to Escherichia coli, and Escherichia coli O157:H7 aldehyde-alcohol dehydrogenase [includes: alcohol dehydrogenase, acetaldehyde dehydrogenase, and pyruvate-formate-lyase deactivase AdhE or Ana or b1241 or z2016 or ecs1741 SWALL:ADHE_ECOLI (SWALL:P17547) (890 aa) fasta scores: E(): 0, 89.1% id in 890 aa; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2634501..2637176 Pectobacterium atrosepticum SCRI1043 2883903 YP_050422.1 CDS tdk NC_004547.2 2637311 2637907 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(2637311..2637907) Pectobacterium atrosepticum SCRI1043 2884308 YP_050423.1 CDS hns2 NC_004547.2 2638299 2638706 D Similar to Erwinia chrysanthemi Hns regulatory protein Hns SWALL:O53007 (EMBL:X89444) (135 aa) fasta scores: E(): 1.2e-39, 91.11% id in 135 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 DNA-binding protein H-NS SWALL:HNS_ECOLI (SWALL:P08936) (136 aa) fasta scores: E(): 8.1e-36, 84.32% id in 134 aa. Also similar to ECA2893 (62.406% id in 133 aa overlap) and to ECA1665 (61.654% id in 133 aa overlap); global DNA-binding transcriptional dual regulator H-NS 2638299..2638706 Pectobacterium atrosepticum SCRI1043 2881906 YP_050424.1 CDS galU NC_004547.2 2638855 2639766 R together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(2638855..2639766) Pectobacterium atrosepticum SCRI1043 2883047 YP_050425.1 CDS expM NC_004547.2 2639973 2640989 R Similar to Pectobacterium carotovorum subsp. carotovorum ExpM protein ExpM SWALL:O86197 (EMBL:AJ224437) (338 aa) fasta scores: E(): 1.4e-123, 95.26% id in 338 aa, and to Erwinia chrysanthemi RssB protein RssB SWALL:Q93KA6 (EMBL:AJ410309) (338 aa) fasta scores: E(): 1.1e-97, 75.73% id in 338 aa; response regulator of RpoS complement(2639973..2640989) Pectobacterium atrosepticum SCRI1043 2884090 YP_050426.1 CDS expL NC_004547.2 2641143 2642048 R Similar to Pectobacterium carotovorum subsp. carotovorum ExpL protein ExpL SWALL:O86196 (EMBL:AJ224437) (303 aa) fasta scores: E(): 1.2e-110, 93.37% id in 302 aa, and to Erwinia chrysanthemi RssA protein RssA SWALL:Q93KA7 (EMBL:AJ410309) (304 aa) fasta scores: E(): 3.1e-84, 72.91% id in 299 aa; hypothetical protein complement(2641143..2642048) Pectobacterium atrosepticum SCRI1043 2884089 YP_050427.1 CDS ECA2332 NC_004547.2 2642181 2642648 D Similar to Yersinia pestis hypothetical protein ypo2172/y2149 ypo2172 or y2149 SWALL:AAM85711 (EMBL:AJ414151) (154 aa) fasta scores: E(): 2.7e-36, 56.77% id in 155 aa, and to Shigella flexneri hypothetical protein ychj ychj or sf1233 SWALL:YCHJ_SHIFL (SWALL:P38481) (152 aa) fasta scores: E(): 6.2e-29, 47.74% id in 155 aa; hypothetical protein 2642181..2642648 Pectobacterium atrosepticum SCRI1043 2881671 YP_050428.1 CDS purU NC_004547.2 2642732 2643580 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 2642732..2643580 Pectobacterium atrosepticum SCRI1043 2884641 YP_050429.1 CDS ECA2334 NC_004547.2 2644386 2645012 R Similar to Pasteurella multocida hypothetical protein Pm0935 SWALL:Q9CM99 (EMBL:AE006133) (226 aa) fasta scores: E(): 6.7e-43, 53.2% id in 203 aa, and to Pseudomonas putida conserved hypothetical protein pp4901 SWALL:AAN70468 (EMBL:AE016792) (203 aa) fasta scores: E(): 2.2e-41, 55.77% id in 199 aa; hypothetical protein complement(2644386..2645012) Pectobacterium atrosepticum SCRI1043 2881319 YP_050430.1 CDS xthA NC_004547.2 2645457 2646263 D removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 2645457..2646263 Pectobacterium atrosepticum SCRI1043 2882646 YP_050431.1 CDS ECA2336 NC_004547.2 2646365 2646655 R Similar to Yersinia pestis exported protein ypo2166 or y2155 SWALL:Q8ZEJ9 (EMBL:AJ414151) (96 aa) fasta scores: E(): 5.7e-17, 48.91% id in 92 aa, and to Salmonella typhi exported protein sty1814 SWALL:Q8Z6F7 (EMBL:AL627271) (91 aa) fasta scores: E(): 2e-14, 50% id in 86 aa; hypothetical protein complement(2646365..2646655) Pectobacterium atrosepticum SCRI1043 2881320 YP_050432.1 CDS topB NC_004547.2 2646652 2648577 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2646652..2648577) Pectobacterium atrosepticum SCRI1043 2884257 YP_050433.1 CDS ECA2338 NC_004547.2 2648673 2649224 R Similar to Yersinia pestis nitroreductase ypo2163 or y2159 SWALL:Q8ZEK2 (EMBL:AJ414151) (183 aa) fasta scores: E(): 1.3e-57, 73.22% id in 183 aa, and to Salmonella typhimurium, and Salmonella typhi oxidoreductase ydja or stm1296 or sty1818 SWALL:Q8XGY1 (EMBL:AE008756) (183 aa) fasta scores: E(): 4.3e-52, 69.39% id in 183 aa; hypothetical protein complement(2648673..2649224) Pectobacterium atrosepticum SCRI1043 2881321 YP_050434.1 CDS sppA NC_004547.2 2649493 2651343 D SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 2649493..2651343 Pectobacterium atrosepticum SCRI1043 2884363 YP_050435.1 CDS ansA NC_004547.2 2651794 2652813 D converts asparagine to aspartate and ammonia; asparaginase 2651794..2652813 Pectobacterium atrosepticum SCRI1043 2884178 YP_050436.1 CDS pncA NC_004547.2 2652833 2653480 D catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase 2652833..2653480 Pectobacterium atrosepticum SCRI1043 2883275 YP_050437.1 CDS ECA2342 NC_004547.2 2653564 2653836 R Similar to Yersinia pestis hypothetical protein Ypo2159 SWALL:Q8ZEK6 (EMBL:AJ414151) (90 aa) fasta scores: E(): 1.4e-26, 78.88% id in 90 aa, and to Escherichia coli hypothetical protein yeac or b1777 SWALL:YEAC_ECOLI (SWALL:P76231) (90 aa) fasta scores: E(): 1.1e-22, 67.04% id in 88 aa; hypothetical protein complement(2653564..2653836) Pectobacterium atrosepticum SCRI1043 2882121 YP_050438.1 CDS msrB NC_004547.2 2653967 2654386 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(2653967..2654386) Pectobacterium atrosepticum SCRI1043 2881210 YP_050439.1 CDS gapA NC_004547.2 2654735 2655739 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 2654735..2655739 Pectobacterium atrosepticum SCRI1043 2882923 YP_050440.1 CDS ECA2345 NC_004547.2 2655847 2656716 D Similar to Salmonella typhimurium enzymes related to aldose 1-epimerase yead or stm1289 SWALL:Q8ZPV9 (EMBL:AE008756) (294 aa) fasta scores: E(): 2.7e-73, 58.7% id in 293 aa, and to Yersinia pestis hypothetical protein ypo2156 or y2166 SWALL:Q8ZEK9 (EMBL:AJ414151) (291 aa) fasta scores: E(): 7.4e-83, 64.01% id in 289 aa; aldose 1-epimerase 2655847..2656716 Pectobacterium atrosepticum SCRI1043 2882122 YP_050441.1 CDS ECA2346 NC_004547.2 2656798 2657649 R Similar to Salmonella typhi oxidoreductase sty1828 SWALL:Q8Z6F0 (EMBL:AL627271) (285 aa) fasta scores: E(): 1.1e-72, 63.7% id in 281 aa, and to Escherichia coli hypothetical protein yeae yeae or b1781 SWALL:YEAE_ECOLI (SWALL:P76234) (284 aa) fasta scores: E(): 4.1e-72, 63.7% id in 281 aa; aldo/keto reductase complement(2656798..2657649) Pectobacterium atrosepticum SCRI1043 2882123 YP_050442.1 CDS mipA NC_004547.2 2657786 2658535 R Similar to Escherichia coli, and Shigella flexneri MltA-interacting protein precursor MipA or b1782 or sf1441 SWALL:MIPA_ECOLI (SWALL:P77486) (248 aa) fasta scores: E(): 7.7e-51, 52.61% id in 249 aa; MltA-interacting protein complement(2657786..2658535) Pectobacterium atrosepticum SCRI1043 2885613 YP_050443.1 CDS ECA2348 NC_004547.2 2658991 2660925 D Similar to Salmonella typhimurium ser protein kinase yeag or stm1285 SWALL:Q8ZPW2 (EMBL:AE008755) (644 aa) fasta scores: E(): 0, 94.09% id in 644 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yeag or b1783 or c2188 or z2823 or ecs2492 SWALL:YEAG_ECOLI (SWALL:P77391) (644 aa) fasta scores: E(): 0, 94.09% id in 644 aa; hypothetical protein 2658991..2660925 Pectobacterium atrosepticum SCRI1043 2882133 YP_050444.1 CDS ECA2349 NC_004547.2 2660962 2662236 D Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein t1163 SWALL:AAO68822 (EMBL:AE016838) (428 aa) fasta scores: E(): 2.7e-140, 86.85% id in 426 aa, and to Escherichia coli hypothetical protein yeah or b1784 SWALL:YEAH_ECOLI (SWALL:P76235) (427 aa) fasta scores: E(): 3.6e-139, 87.41% id in 421 aa; hypothetical protein 2660962..2662236 Pectobacterium atrosepticum SCRI1043 2882134 YP_050445.1 CDS ECA2350 NC_004547.2 2662378 2663577 D Similar to Yersinia pestis multidrug resistance protein ypo2148 or y2173 SWALL:Q8ZEL6 (EMBL:AJ414151) (400 aa) fasta scores: E(): 3.6e-100, 68.58% id in 382 aa, and to Shewanella oneidensis drug resistance transporter, bcr/cfla family protein so4555 SWALL:AAN57516 (EMBL:AE015887) (402 aa) fasta scores: E(): 1.4e-52, 42.3% id in 390 aa; transport protein 2662378..2663577 Pectobacterium atrosepticum SCRI1043 2882135 YP_050446.1 CDS dadA NC_004547.2 2663609 2664862 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(2663609..2664862) Pectobacterium atrosepticum SCRI1043 2882627 YP_050447.1 CDS ECA2352 NC_004547.2 2665344 2666324 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri 6-phosphofructokinase isozyme I PfkA or b3916 or z5460 or ecs4841 or sf3994 SWALL:K6P1_ECOLI (SWALL:P06998) (320 aa) fasta scores: E(): 1.9e-17, 30.79% id in 315 aa. Also similar to ECA4307 (isozyme I, PfkA) (30.323% id.in 310 aa overlap); 6-phosphofructokinase isozyme II 2665344..2666324 Pectobacterium atrosepticum SCRI1043 2882172 YP_050448.1 CDS ECA2353 NC_004547.2 2666335 2666628 D Similar to Listeria monocytogenes hypothetical protein Lmo2650 SWALL:Q8Y425 (EMBL:AL591984) (90 aa) fasta scores: E(): 5e-08, 35.1% id in 94 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein stm2343 or sty2573 SWALL:Q8XG32 (EMBL:AE008805) (90 aa) fasta scores: E(): 7.8e-08, 42.85% id in 91 aa; hypothetical protein 2666335..2666628 Pectobacterium atrosepticum SCRI1043 2882173 YP_050449.1 CDS ulaA NC_004547.2 2666642 2667979 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 2666642..2667979 Pectobacterium atrosepticum SCRI1043 2882174 YP_050450.1 CDS ECA2355 NC_004547.2 2668044 2668322 D hypothetical protein 2668044..2668322 Pectobacterium atrosepticum SCRI1043 2882187 YP_050451.1 CDS ECA2356 NC_004547.2 2668329 2668766 D Similar to Escherichia coli, and Escherichia coli O157:H7 unknown pentitol phosphotransferase enzyme ii, a component sgaa or b4195 or z5804 or ecs5171 SWALL:PTXA_ECOLI (SWALL:P39303) (154 aa) fasta scores: E(): 2.3e-15, 34.01% id in 147 aa, and to Salmonella typhimurium PTS enzyme iisga subunit ptxa or stm4385 SWALL:Q8ZK88 (EMBL:AE008905) (154 aa) fasta scores: E(): 9e-16, 34.69% id in 147 aa; PTS system transporter subunit IIA 2668329..2668766 Pectobacterium atrosepticum SCRI1043 2882188 YP_050452.1 CDS ECA2357 NC_004547.2 2668763 2669296 D Similar to Brucella suis shikimate kinase Arok or br2029 SWALL:Q8FY59 (EMBL:AE014491) (200 aa) fasta scores: E(): 2.3, 20.78% id in 178 aa, and to the C-terminal region of Rhizobium loti glucokinase mlr3412 SWALL:Q98GB0 (EMBL:AP003001) (482 aa) fasta scores: E(): 1.5e-27, 45.71% id in 175 aa; kinase 2668763..2669296 Pectobacterium atrosepticum SCRI1043 2882189 YP_050453.1 CDS ECA2358 NC_004547.2 2669333 2670232 D Similar to Rhizobium loti tagatose-1,6-bisphosphate aldolase mlr3411 SWALL:Q98GB1 (EMBL:AP003001) (302 aa) fasta scores: E(): 2.3e-75, 62.75% id in 298 aa, and to Streptococcus mutans tagatose 1,6-diphosphate aldolase LacD or smu.1493 SWALL:LACD_STRMU (SWALL:P26425) (325 aa) fasta scores: E(): 4.2e-06, 23.19% id in 319 aa; aldolase 2669333..2670232 Pectobacterium atrosepticum SCRI1043 2882190 YP_050454.1 CDS ECA2359 NC_004547.2 2670474 2672015 D Similar to Salmonella typhimurium cytoplasmic protein ycgb or stm1804 SWALL:Q8ZP16 (EMBL:AE008780) (510 aa) fasta scores: E(): 1.3e-185, 85.6% id in 507 aa, and to Escherichia coli hypothetical protein ycgb or b1188 SWALL:YCGB_ECOLI (SWALL:P29013) (510 aa) fasta scores: E(): 4.9e-185, 84.98% id in 506 aa; SpoVR family protein 2670474..2672015 Pectobacterium atrosepticum SCRI1043 2885072 YP_050455.1 CDS fadR NC_004547.2 2672121 2672840 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(2672121..2672840) Pectobacterium atrosepticum SCRI1043 2883502 YP_050456.1 CDS nhaB NC_004547.2 2673071 2674651 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2673071..2674651 Pectobacterium atrosepticum SCRI1043 2882752 YP_050457.1 CDS dsbB NC_004547.2 2674846 2675376 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 2674846..2675376 Pectobacterium atrosepticum SCRI1043 2882415 YP_050458.1 CDS ECA2363 NC_004547.2 2675458 2675655 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri DNA polymerase III, theta subunit HolE or b1842 or c2252 or z2891 or ecs2552 or sf1852.1 SWALL:HOLE_ECOLI (SWALL:P28689) (76 aa) fasta scores: E(): 3.5, 32.65% id in 49 aa, and to Yersinia pestis hypothetical protein ypo2590 ypo2590 or y1160 SWALL:Q8ZDH8 (EMBL:AJ414153) (64 aa) fasta scores: E(): 5e-09, 50.79% id in 63 aa; DNA polymerase III subunit theta complement(2675458..2675655) Pectobacterium atrosepticum SCRI1043 2885073 YP_050459.1 CDS ECA2364 NC_004547.2 2676020 2676427 D lipoprotein 2676020..2676427 Pectobacterium atrosepticum SCRI1043 2885074 YP_050460.1 CDS ECA2365 NC_004547.2 2676514 2676960 R Similar to Escherichia coli, and Shigella flexneri hypothetical protein ycgn or b1181 or sf1170 SWALL:AAN42786 (EMBL:AE000216) (153 aa) fasta scores: E(): 6.8e-54, 79.73% id in 148 aa, and to Yersinia pestis hypothetical protein ypo2083 or y2228 SWALL:AAM85788 (EMBL:AJ414151) (148 aa) fasta scores: E(): 7.8e-54, 80.4% id in 148 aa; hypothetical protein complement(2676514..2676960) Pectobacterium atrosepticum SCRI1043 2885814 YP_050461.1 CDS ECA2366 NC_004547.2 2677067 2677723 R Similar to Yersinia pestis fumarylacetoacetate hydrolase family protein ypo2082 SWALL:Q8ZES1 (EMBL:AJ414151) (218 aa) fasta scores: E(): 5.9e-73, 82.56% id in 218 aa, and to Salmonella typhimurium, and Salmonella typhi fumarylacetoacetate ycgm or stm1812 or sty1942 SWALL:Q8XF52 (EMBL:AE008780) (219 aa) fasta scores: E(): 3.8e-66, 75.34% id in 219 aa; hypothetical protein complement(2677067..2677723) Pectobacterium atrosepticum SCRI1043 2885815 YP_050462.1 CDS ECA2367 NC_004547.2 2678066 2678353 R Similar to Shigella flexneri orf, conserved hypothetical protein ycgl or sf1168 SWALL:AAN42784 (EMBL:AE015143) (108 aa) fasta scores: E(): 1.3e-25, 83.52% id in 85 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein ycgl or b1179 or c1627 or z1941 or ecs1674 SWALL:YCGL_ECOLI (SWALL:P76003) (108 aa) fasta scores: E(): 4e-25, 82.35% id in 85 aa; hypothetical protein complement(2678066..2678353) Pectobacterium atrosepticum SCRI1043 2885816 YP_050463.1 CDS minC NC_004547.2 2678460 2679146 D blocks the formation of polar Z-ring septums; septum formation inhibitor 2678460..2679146 Pectobacterium atrosepticum SCRI1043 2883085 YP_050464.1 CDS minD NC_004547.2 2679167 2679979 D ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 2679167..2679979 Pectobacterium atrosepticum SCRI1043 2883086 YP_050465.1 CDS minE NC_004547.2 2679983 2680252 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2679983..2680252 Pectobacterium atrosepticum SCRI1043 2883087 YP_050466.1 CDS rnd NC_004547.2 2680470 2681594 R Similar to Escherichia coli ribonuclease D Rnd or b1804 SWALL:RND_ECOLI (SWALL:P09155) (375 aa) fasta scores: E(): 2.7e-102, 65.24% id in 374 aa; ribonuclease D complement(2680470..2681594) Pectobacterium atrosepticum SCRI1043 2885042 YP_050467.1 CDS fadD NC_004547.2 2681736 2683421 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(2681736..2683421) Pectobacterium atrosepticum SCRI1043 2883750 YP_050468.1 CDS ECA2373 NC_004547.2 2683819 2684415 R Similar to Escherichia coli, and Escherichia coli O6 hypothetical lipoprotein yeay precursor yeay or b1806 or c2210 SWALL:YEAY_ECOLI (SWALL:P76255) (193 aa) fasta scores: E(): 3.6e-38, 57.36% id in 197 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 lipoprotein t1058 SWALL:AAO68724 (EMBL:AE016837) (193 aa) fasta scores: E(): 8.2e-38, 57.36% id in 197 aa; outer membrane lipoprotein complement(2683819..2684415) Pectobacterium atrosepticum SCRI1043 2885817 YP_050469.1 CDS ECA2374 NC_004547.2 2684682 2685383 R Similar to Yersinia pestis hypothetical protein Ypo2072 SWALL:Q8ZET1 (EMBL:AJ414151) (232 aa) fasta scores: E(): 1.3e-62, 72.84% id in 232 aa, and to Escherichia coli hypothetical protease yeaz yeaz or b1807 SWALL:YEAZ_ECOLI (SWALL:P76256) (231 aa) fasta scores: E(): 2.8e-59, 69.13% id in 230 aa; hypothetical protein complement(2684682..2685383) Pectobacterium atrosepticum SCRI1043 2885786 YP_050470.1 CDS ECA2375 NC_004547.2 2685498 2687417 R Similar to Yersinia pestis dead box family helicase ypo2071 or y2239 SWALL:Q8ZET2 (EMBL:AJ414151) (634 aa) fasta scores: E(): 2.8e-217, 84.12% id in 630 aa, and to Escherichia coli O6 probable ATP-dependent helicase yoaa c2212 SWALL:AAN80671 (EMBL:AE016761) (636 aa) fasta scores: E(): 1.2e-208, 80.57% id in 628 aa; ATP-dependent helicase complement(2685498..2687417) Pectobacterium atrosepticum SCRI1043 2885787 YP_050471.1 CDS ECA2376 NC_004547.2 2687612 2687956 D Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yoab or b1809 or c2213 or sf1419 SWALL:YOAB_ECOLI (SWALL:P76258) (114 aa) fasta scores: E(): 6.4e-31, 73.68% id in 114 aa, and to Yersinia pestis hypothetical protein ypo2070 or y2240 SWALL:Q8ZET3 (EMBL:AJ414151) (114 aa) fasta scores: E(): 1.4e-30, 71.93% id in 114 aa; endoribonuclease 2687612..2687956 Pectobacterium atrosepticum SCRI1043 2884913 YP_050472.1 CDS ECA2377 NC_004547.2 2688125 2688361 R Similar to Yersinia pestis hypothetical protein ypo1774 or y2534 SWALL:YH74_YERPE (SWALL:Q8ZFE0) (85 aa) fasta scores: E(): 1.1e-10, 53.84% id in 78 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yoah or b1811 or c2216 or z2854 or ecs2520 SWALL:YOAH_ECOLI (SWALL:P76260) (59 aa) fasta scores: E(): 1.7e-10, 67.24% id in 58 aa; hypothetical protein complement(2688125..2688361) Pectobacterium atrosepticum SCRI1043 2884914 YP_050473.1 CDS pabB NC_004547.2 2688488 2689942 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 2688488..2689942 Pectobacterium atrosepticum SCRI1043 2885412 YP_050474.1 CDS ECA2379 NC_004547.2 2689954 2690532 D Similar to Escherichia coli hypothetical upf0035 protein yeab or b1813 SWALL:YEAB_ECOLI (SWALL:P43337) (192 aa) fasta scores: E(): 3.4e-41, 60.41% id in 192 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical upf0035 protein yeab or stm1825 or sty1955 SWALL:YEAB_SALTY (SWALL:P43339) (192 aa) fasta scores: E(): 8e-41, 58.33% id in 192 aa; hypothetical protein 2689954..2690532 Pectobacterium atrosepticum SCRI1043 2884915 YP_050475.1 CDS sdaA NC_004547.2 2691006 2692370 D Similar to Escherichia coli L-serine dehydratase 1 SdaA or b1814 SWALL:SDHL_ECOLI (SWALL:P16095) (454 aa) fasta scores: E(): 5.1e-154, 83.92% id in 454 aa. Also similar to ECA3159 (SdaB) (75.165% id. in 455 aa overlap); L-serine dehydratase 1 2691006..2692370 Pectobacterium atrosepticum SCRI1043 2884422 YP_050476.1 CDS ECA2381 NC_004547.2 2692521 2693453 R Similar to Vibrio vulnificus transcriptional regulator vv21654 SWALL:AAO08512 (EMBL:AE016813) (307 aa) fasta scores: E(): 3.6e-40, 39.79% id in 299 aa, and to Xanthomonas campestris transcriptional regulator xcc3667 SWALL:Q8P4P0 (EMBL:AE012487) (311 aa) fasta scores: E(): 7.8e-40, 41.27% id in 298 aa; LysR family transcriptional regulator complement(2692521..2693453) Pectobacterium atrosepticum SCRI1043 2884916 YP_050477.1 CDS ECA2382 NC_004547.2 2693565 2694197 D Similar to Ralstonia solanacearum transmemembrane reductase oxidoreductase protein rsp1147 or rs05455 SWALL:Q8XQS2 (EMBL:AL646083) (208 aa) fasta scores: E(): 4.5e-24, 43.81% id in 210 aa, and to Streptomyces coelicolor reductase sco0967 or scm11.22C SWALL:Q9RIU0 (EMBL:AL939107) (207 aa) fasta scores: E(): 5.2e-16, 39.89% id in 188 aa; NADP oxidoreductase coenzyme F420-dependent protein 2693565..2694197 Pectobacterium atrosepticum SCRI1043 2884895 YP_050478.1 CDS ECA2383 NC_004547.2 2694345 2695058 D Similar to Pseudomonas aeruginosa probable hydrolase pa1202 SWALL:Q9I4D6 (EMBL:AE004550) (205 aa) fasta scores: E(): 3.9e-25, 41.17% id in 204 aa, and to Pseudomonas syringae isochorismatase family protein pspto1009 SWALL:AAO54542 (EMBL:AE016859) (208 aa) fasta scores: E(): 5.3e-24, 38.91% id in 203 aa; isochorismatase 2694345..2695058 Pectobacterium atrosepticum SCRI1043 2884896 YP_050479.1 CDS ECA2384 NC_004547.2 2695181 2696737 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yoae or b1816 or c2222 or z2859 or ecs2525 SWALL:YOAE_ECOLI (SWALL:P76262) (518 aa) fasta scores: E(): 1.6e-140, 72.64% id in 519 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 membrane protein t1049 SWALL:AAO68715 (EMBL:AE016837) (519 aa) fasta scores: E(): 2.8e-137, 70.9% id in 519 aa; hypothetical protein complement(2695181..2696737) Pectobacterium atrosepticum SCRI1043 2884897 YP_050480.1 CDS manX NC_004547.2 2697304 2698272 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, mannose-specific iiab component ManX or PtsL or GptB or b1817 or c2223 or z2860 or ecs2527 or sf1411 SWALL:PTNA_ECOLI (SWALL:P08186) (322 aa) fasta scores: E(): 5.5e-80, 74.84% id in 322 aa; PTS system mannose-specific transporter subunit IIAB 2697304..2698272 Pectobacterium atrosepticum SCRI1043 2881337 YP_050481.1 CDS manY NC_004547.2 2698450 2699247 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, mannose-specific IIc component ManY or PtsP or Pel or b1818 or c2224 or z2861 or ecs2528 or sf1410 SWALL:PTNC_ECOLI (SWALL:P08187) (266 aa) fasta scores: E(): 1e-78, 87.21% id in 266 aa; PTS system mannose-specific transporter subunit IIC 2698450..2699247 Pectobacterium atrosepticum SCRI1043 2881397 YP_050482.1 CDS manZ NC_004547.2 2699262 2700104 D hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 2699262..2700104 Pectobacterium atrosepticum SCRI1043 2881398 YP_050483.1 CDS ECA2388 NC_004547.2 2700179 2700637 D Similar to Yersinia pestis membrane protein ypo1755 or y2554 SWALL:AAM86109 (EMBL:AJ414150) (153 aa) fasta scores: E(): 3e-41, 73.02% id in 152 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yobd or b1820 or c2227 SWALL:YOBD_ECOLI (SWALL:P76263) (152 aa) fasta scores: E(): 8.8e-33, 57.89% id in 152 aa; hypothetical protein 2700179..2700637 Pectobacterium atrosepticum SCRI1043 2884762 YP_050484.1 CDS ECA2389 NC_004547.2 2701066 2701629 D Similar to Yersinia pestis membrane protein ypo1754 or y2555 SWALL:Q8ZFF8 (EMBL:AJ414150) (189 aa) fasta scores: E(): 1.2e-53, 76.88% id in 186 aa, and to Escherichia coli hypothetical protein yebn or b1821 SWALL:YEBN_ECOLI (SWALL:P76264) (206 aa) fasta scores: E(): 2.3e-49, 67.2% id in 186 aa; hypothetical protein 2701066..2701629 Pectobacterium atrosepticum SCRI1043 2884763 YP_050485.1 CDS rrmA NC_004547.2 2701800 2702630 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase complement(2701800..2702630) Pectobacterium atrosepticum SCRI1043 2884460 YP_050486.1 CDS ECA2391 NC_004547.2 2702738 2702947 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, and Salmonella typhi cold shock-like protein CspC SWALL:CSPC_ECOLI (SWALL:P36996) (68 aa) fasta scores: E(): 3.2e-25, 97.05% id in 68 aa, and to Yersinia pestis cold shock protein ypo1746 SWALL:Q8ZFG3 (EMBL:AJ414150) (69 aa) fasta scores: E(): 5.2e-26, 98.55% id in 69 aa; cold shock-like protein CspC complement(2702738..2702947) Pectobacterium atrosepticum SCRI1043 2884764 YP_050487.1 CDS yfeA NC_004547.2 2704043 2704957 D Similar to Yersinia pestis periplasmic chelated iron-binding protein YfeA precursor yfea or ypo2439 or y1897 SWALL:YFEA_YERPE (SWALL:Q56952) (311 aa) fasta scores: E(): 1.6e-89, 78.85% id in 298 aa; periplasmic chelated iron-binding protein 2704043..2704957 Pectobacterium atrosepticum SCRI1043 2882640 YP_050488.1 CDS yfeB NC_004547.2 2704954 2705844 D Similar to Yersinia pestis chelated iron transport system membrane protein YfeB or ypo2440 or y1896 SWALL:YFEB_YERPE (SWALL:Q56953) (296 aa) fasta scores: E(): 1.6e-83, 80.14% id in 277 aa; chelated iron transport system membrane protein 2704954..2705844 Pectobacterium atrosepticum SCRI1043 2882480 YP_050489.1 CDS yfeC NC_004547.2 2705844 2706707 D Similar to Yersinia pestis chelated iron transport system membrane protein YfeC or ypo2441 or y1895 SWALL:YFEC_YERPE (SWALL:Q56954) (294 aa) fasta scores: E(): 2.1e-93, 90.03% id in 281 aa; chelated iron transport system membrane protein 2705844..2706707 Pectobacterium atrosepticum SCRI1043 2882481 YP_050490.1 CDS yfeD NC_004547.2 2706704 2707561 D Similar to Yersinia pestis chelated iron transport system membrane protein YfeD or ypo2442 or y1894 SWALL:YFED_YERPE (SWALL:Q56955) (297 aa) fasta scores: E(): 3.6e-84, 76.67% id in 283 aa; chelated iron transport system membrane protein 2706704..2707561 Pectobacterium atrosepticum SCRI1043 2882482 YP_050491.1 CDS ECA2396 NC_004547.2 2707951 2708811 D Similar to Yersinia pestis hypothetical protein ypo2444 ypo2444 or y1892 SWALL:Q8ZDV8 (EMBL:AJ414152) (291 aa) fasta scores: E(): 1.1e-92, 72.53% id in 284 aa, and to Escherichia coli hypothetical protein ynia ynia or b1725 SWALL:YNIA_ECOLI (SWALL:P77739) (286 aa) fasta scores: E(): 1.6e-89, 70.42% id in 284 aa; fructosamine kinase 2707951..2708811 Pectobacterium atrosepticum SCRI1043 2884765 YP_050492.1 CDS yfeE NC_004547.2 2708881 2709429 R Similar to Yersinia pestis yfeabcd regulator YfeE or ypo2445 or y1891 SWALL:YFEE_YERPE (SWALL:Q56956) (184 aa) fasta scores: E(): 1.8e-48, 63.73% id in 182 aa, and to Salmonella typhimurium, and Salmonella typhi regulator ynib or stm1323 or sty1788 SWALL:Q8XFB7 (EMBL:AE008757) (178 aa) fasta scores: E(): 6.8e-47, 63.33% id in 180 aa; hypothetical protein complement(2708881..2709429) Pectobacterium atrosepticum SCRI1043 2882477 YP_050493.1 CDS ECA2398 NC_004547.2 2709729 2710394 D YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 2709729..2710394 Pectobacterium atrosepticum SCRI1043 2884087 YP_050494.1 CDS kdgF NC_004547.2 2710485 2710820 R Similar to Erwinia chrysanthemi pectin degradation protein KdgF SWALL:KDGF_ERWCH (SWALL:Q05527) (110 aa) fasta scores: E(): 3.3e-38, 89.09% id in 110 aa, and to Yersinia pestis pectin degradation protein KdgF or y1888 SWALL:AAM85455 (EMBL:AE013792) (116 aa) fasta scores: E(): 2.9e-33, 77.98% id in 109 aa; pectin degradation protein complement(2710485..2710820) Pectobacterium atrosepticum SCRI1043 2885180 YP_050495.1 CDS kduI1 NC_004547.2 2711183 2712019 D 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 2711183..2712019 Pectobacterium atrosepticum SCRI1043 2885694 YP_050496.1 CDS kduD NC_004547.2 2712101 2712862 D catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 2712101..2712862 Pectobacterium atrosepticum SCRI1043 2884739 YP_050497.1 CDS pelW NC_004547.2 2713137 2714768 D Similar to Erwinia chrysanthemi pectate disaccharide-lyase PelW or KdgC SWALL:PELW_ERWCH (SWALL:Q05526) (553 aa) fasta scores: E(): 1.8e-175, 73.97% id in 538 aa. Also similar to ECA2135 (PelB) (37.782% id 532 aa overlap); pectate disaccharide-lyase 2713137..2714768 Pectobacterium atrosepticum SCRI1043 2884509 YP_050498.1 CDS togM NC_004547.2 2714816 2715706 D Similar to Erwinia chrysanthemi inner membrane protein TogM SWALL:Q93KC0 (EMBL:AJ305144) (296 aa) fasta scores: E(): 1.2e-115, 97.63% id in 296 aa; binding-protein-dependent transport system, inner membrane component 2714816..2715706 Pectobacterium atrosepticum SCRI1043 2884269 YP_050499.1 CDS togN NC_004547.2 2715699 2716604 D Similar to Erwinia chrysanthemi inner membrane protein TogN SWALL:Q93KB9 (EMBL:AJ305144) (300 aa) fasta scores: E(): 1.7e-108, 90.03% id in 301 aa; binding-protein-dependent transport system, inner membrane component 2715699..2716604 Pectobacterium atrosepticum SCRI1043 2884270 YP_050500.1 CDS togA NC_004547.2 2716618 2717745 D Similar to Erwinia chrysanthemi ABC ATPase TogA SWALL:Q93KB8 (EMBL:AJ305144) (375 aa) fasta scores: E(): 8e-119, 85.6% id in 375 aa; ABC transporter ATP-binding protein 2716618..2717745 Pectobacterium atrosepticum SCRI1043 2884274 YP_050501.1 CDS togB NC_004547.2 2717761 2719050 D Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 3.3e-143, 84.84% id in 429 aa, and to Yersinia pestis sugar-binding protein ypo1719 or TogB or y1881 SWALL:Q8ZFI4 (EMBL:AJ414150) (430 aa) fasta scores: E(): 1.4e-137, 80.69% id in 430 aa. Also similar to ECA3551 (56.398% id) and to ECA2210 (50.117% id); periplasmic pectic oligomers binding protein 2717761..2719050 Pectobacterium atrosepticum SCRI1043 2884275 YP_050502.1 CDS kdgM NC_004547.2 2719307 2720023 D Similar to Erwinia chrysanthemi oligogalacturonate-specific porin KdgM precursor kdgM SWALL:KDGM_ERWCH (SWALL:Q934G3) (236 aa) fasta scores: E(): 7.1e-64, 67.22% id in 238 aa. Also similar to ECA2302 (59.259% id).; oligogalacturonate-specific porin 2719307..2720023 Pectobacterium atrosepticum SCRI1043 2885182 YP_050503.1 CDS paeX NC_004547.2 2720363 2721325 D Similar to Erwinia chrysanthemi pectin acetylesterase precursor PaeX SWALL:Q83V97 (EMBL:AJ507215) (322 aa) fasta scores: E(): 1.6e-94, 78.06% id in 310 aa, and to Xanthomonas campestris xylanase XynB or xcc0144 SWALL:Q8PE39 (EMBL:AE012110) (329 aa) fasta scores: E(): 3.3e-61, 56.08% id in 296 aa; pectin acetylesterase 2720363..2721325 Pectobacterium atrosepticum SCRI1043 2881520 YP_050504.1 CDS ECA2409 NC_004547.2 2721434 2722009 D Similar to Escherichia coli, and Shigella flexneri hypothetical protein ydjm precursor ydjm or b1728 or sf1502 SWALL:YDJM_ECOLI (SWALL:P76209) (200 aa) fasta scores: E(): 1.1e-50, 62.3% id in 191 aa, and to Yersinia pestis membrane protein ypo1717 or y1879 SWALL:Q8ZFI6 (EMBL:AJ414150) (182 aa) fasta scores: E(): 1.2e-50, 67.58% id in 182 aa; hypothetical protein 2721434..2722009 Pectobacterium atrosepticum SCRI1043 2884088 YP_050505.1 CDS ECA2410 NC_004547.2 2722186 2723580 D Similar to Yersinia pestis transport protein ypo1716 or y1878 SWALL:Q8ZFI7 (EMBL:AJ414150) (465 aa) fasta scores: E(): 5.1e-137, 81.68% id in 464 aa, and to Escherichia coli hypothetical symporter ydjn ydjn or b1729 SWALL:YDJN_ECOLI (SWALL:P77529) (463 aa) fasta scores: E(): 5e-135, 81.42% id in 463 aa; sodium:dicarboxylate symporter 2722186..2723580 Pectobacterium atrosepticum SCRI1043 2884061 YP_050506.1 CDS osmE NC_004547.2 2723691 2724020 R osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE complement(2723691..2724020) Pectobacterium atrosepticum SCRI1043 2882726 YP_050507.1 CDS nadE NC_004547.2 2724246 2725070 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2724246..2725070 Pectobacterium atrosepticum SCRI1043 2885136 YP_050508.1 CDS ECA2413 NC_004547.2 2725214 2726101 D Similar to Escherichia coli O6 hypothetical protein yddg or c1902 SWALL:Q8FHH9 (EMBL:AE016760) (293 aa) fasta scores: E(): 3.5e-58, 49.14% id in 291 aa, and to Salmonella typhimurium permease yddg or stm1571 SWALL:Q8ZPE4 (EMBL:AE008768) (274 aa) fasta scores: E(): 3.1e-53, 48.7% id in 271 aa; hypothetical protein 2725214..2726101 Pectobacterium atrosepticum SCRI1043 2884062 YP_050509.1 CDS ECA2414 NC_004547.2 2726216 2727934 D Similar to Yersinia pestis ABC transporter ATP-binding protein ypo1735 or y2573 SWALL:Q8ZFH4 (EMBL:AJ414150) (572 aa) fasta scores: E(): 3.6e-167, 79.37% id in 572 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu1738 or agr_c_3190 SWALL:Q8UEL9 (EMBL:AE009130) (598 aa) fasta scores: E(): 1.2e-148, 69.59% id in 569 aa; ABC transporter ATP-binding protein 2726216..2727934 Pectobacterium atrosepticum SCRI1043 2884063 YP_050510.1 CDS ECA2415 NC_004547.2 2728063 2728506 D Similar to Salmonella typhi hypothetical protein Sty2982 SWALL:Q8Z4B1 (EMBL:AL627276) (114 aa) fasta scores: E(): 6.2e-26, 58.92% id in 112 aa, and to Escherichia coli O6 hypothetical protein ygba or c3293 SWALL:AAN81742 (EMBL:AE016765) (114 aa) fasta scores: E(): 2.5e-25, 58.03% id in 112 aa; hypothetical protein 2728063..2728506 Pectobacterium atrosepticum SCRI1043 2884064 YP_050511.1 CDS ihfA NC_004547.2 2728548 2728844 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(2728548..2728844) Pectobacterium atrosepticum SCRI1043 2882329 YP_050512.1 CDS pheT NC_004547.2 2728849 2731236 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2728849..2731236) Pectobacterium atrosepticum SCRI1043 2884714 YP_050513.1 CDS pheS NC_004547.2 2731251 2732234 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2731251..2732234) Pectobacterium atrosepticum SCRI1043 2884713 YP_050514.1 CDS rplT NC_004547.2 2732547 2732903 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2732547..2732903) Pectobacterium atrosepticum SCRI1043 2883620 YP_050515.1 CDS rpmI NC_004547.2 2732947 2733144 R Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L35 rpmi or b1717 or z2746 or ecs2424 or stm1335 or sty1776 or sf1514 SWALL:RL35_ECOLI (SWALL:P07085) (64 aa) fasta scores: E(): 4.3e-23, 92.18% id in 64 aa; 50S ribosomal protein L35 complement(2732947..2733144) Pectobacterium atrosepticum SCRI1043 2884491 YP_050516.1 CDS infC NC_004547.2 2733240 2733782 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(2733240..2733782) Pectobacterium atrosepticum SCRI1043 2881772 YP_050517.1 CDS thrS NC_004547.2 2733785 2735713 R catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase complement(2733785..2735713) Pectobacterium atrosepticum SCRI1043 2884283 YP_050518.1 CDS ECA2423 NC_004547.2 2735993 2737369 R Similar to Escherichia coli aromatic amino acid transport protein AroP or b0112 SWALL:AROP_ECOLI (SWALL:P15993) (457 aa) fasta scores: E(): 4.4e-119, 68.28% id in 454 aa, and to Escherichia coli phenylalanine-specific permease PheP or b0576 SWALL:PHEP_ECOLI (SWALL:P24207) (458 aa) fasta scores: E(): 4.2e-117, 67.49% id in 443 aa; aromatic amino acid transport protein complement(2735993..2737369) Pectobacterium atrosepticum SCRI1043 2883846 YP_050519.1 CDS ECA2424 NC_004547.2 2737483 2737746 R Similar to Yersinia pestis hypothetical protein ypo1740 or y2567 SWALL:YH40_YERPE (SWALL:Q8ZFG9) (91 aa) fasta scores: E(): 4.3e-07, 46.51% id in 86 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1401 SWALL:AAN43002 (EMBL:AE015164) (95 aa) fasta scores: E(): 4.6e-06, 36.36% id in 88 aa; hypothetical protein complement(2737483..2737746) Pectobacterium atrosepticum SCRI1043 2883847 YP_050520.1 CDS kdgR NC_004547.2 2737976 2738767 R Similar to Pectobacterium carotovorum subsp. atrosepticum KdgR repressor kdgR SWALL:Q8KM23 (EMBL:AJ504847) (263 aa) fasta scores: E(): 5.4e-99, 97.33% id in 263 aa, and to Erwinia chrysanthemi pectin degradation repressor protein KdgR SWALL:KDGR_ERWCH (SWALL:P37728) (305 aa) fasta scores: E(): 2.8e-92, 91.25% id in 263 aa; pectin degradation repressor complement(2737976..2738767) Pectobacterium atrosepticum SCRI1043 2884866 YP_050521.1 CDS ogl NC_004547.2 2738982 2740148 R Similar to Erwinia chrysanthemi oligogalacturonate lyase Ogl SWALL:OGL_ERWCH (SWALL:P21258) (388 aa) fasta scores: E(): 1.1e-155, 87.85% id in 387 aa, and to Erwinia carotovora oligogalacturonide lyase Ogl SWALL:OGL_ERWCA (SWALL:Q59418) (388 aa) fasta scores: E(): 3.2e-171, 97.93% id in 388 aa; oligogalacturonate lyase complement(2738982..2740148) Pectobacterium atrosepticum SCRI1043 2883542 YP_050522.1 CDS htpX NC_004547.2 2740491 2741372 R metalloprotease; heat shock protein HtpX complement(2740491..2741372) Pectobacterium atrosepticum SCRI1043 2883839 YP_050523.1 CDS ECA2428 NC_004547.2 2741537 2742385 R Similar to Xanthomonas axonopodis glycerophosphodiester phosphodiesterase GlpQ or xac1147 SWALL:Q8PNC6 (EMBL:AE011744) (273 aa) fasta scores: E(): 1.4e-20, 32.25% id in 279 aa, and to Agrobacterium tumefaciens hypothetical protein atu4572 atu4572 or agr_l_598 SWALL:Q8U782 (EMBL:AE009385) (306 aa) fasta scores: E(): 1.1e-38, 39.31% id in 262 aa; glycerophosphoryl diester phosphodiesterase complement(2741537..2742385) Pectobacterium atrosepticum SCRI1043 2883848 YP_050524.1 CDS ECA2429 NC_004547.2 2742416 2743753 R Similar to Escherichia coli, and Escherichia coli O157:H7 glycerol-3-phosphate-binding periplasmic protein precursor UgpB or b3453 or z4822 or ecs4299 SWALL:UGPB_ECOLI (SWALL:P10904) (438 aa) fasta scores: E(): 2.4e-110, 62.67% id in 426 aa; glycerol-3-phosphate-binding periplasmic protein complement(2742416..2743753) Pectobacterium atrosepticum SCRI1043 2883776 YP_050525.1 CDS ECA2430 NC_004547.2 2744004 2745227 R Similar to Escherichia coli hypothetical protein yhjx or b3547 SWALL:YHJX_ECOLI (SWALL:P37662) (402 aa) fasta scores: E(): 1.7e-63, 45.99% id in 387 aa, and to Archaeoglobus fulgidus oxalate/formate antiporter af0367 SWALL:O29880 (EMBL:AE001079) (397 aa) fasta scores: E(): 6.5e-38, 32.33% id in 399 aa; hypothetical protein complement(2744004..2745227) Pectobacterium atrosepticum SCRI1043 2883777 YP_050526.1 CDS ECA2431 NC_004547.2 2745411 2746160 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical response regulatory protein ypdb or b2381 or z3646 or ecs3261 or sf2444.2 SWALL:YPDB_ECOLI (SWALL:P77742) (244 aa) fasta scores: E(): 1.6e-73, 75.9% id in 249 aa, and to Klebsiella pneumoniae MrkE protein MrkE SWALL:MRKE_KLEPN (SWALL:P21649) (269 aa) fasta scores: E(): 1e-49, 73.4% id in 188 aa; two-component response regulator complement(2745411..2746160) Pectobacterium atrosepticum SCRI1043 2883778 YP_050527.1 CDS ECA2432 NC_004547.2 2746157 2747899 R Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ypda or b2380 or z3645 or ecs3260 SWALL:YPDA_ECOLI (SWALL:P76523) (565 aa) fasta scores: E(): 1.9e-161, 75.67% id in 559 aa, and to Fusobacterium nucleatum autolysin sensor kinase fn0220 SWALL:Q8R6B2 (EMBL:AE010534) (541 aa) fasta scores: E(): 1e-73, 40.89% id in 538 aa; two-component sensor kinase complement(2746157..2747899) Pectobacterium atrosepticum SCRI1043 2883779 YP_050528.1 CDS ECA2433 NC_004547.2 2748047 2750215 R Similar to Caulobacter crescentus sensory box/ggdef family protein cc3094 SWALL:Q9A3V7 (EMBL:AE005972) (748 aa) fasta scores: E(): 3.4e-74, 34.06% id in 731 aa, and to Rhizobium loti hypothetical protein Mll7787 SWALL:Q984Y8 (EMBL:AP003012) (724 aa) fasta scores: E(): 1.7e-66, 37.17% id in 581 aa; signaling protein complement(2748047..2750215) Pectobacterium atrosepticum SCRI1043 2883603 YP_050529.1 CDS ECA2434 NC_004547.2 2750608 2750931 R hypothetical protein complement(2750608..2750931) Pectobacterium atrosepticum SCRI1043 2883604 YP_050530.1 CDS rdgA NC_004547.2 2751259 2751993 D Similar to Erwinia carotovora DNA-binding protein RdgA SWALL:RDGA_ERWCA (SWALL:Q47587) (244 aa) fasta scores: E(): 6.8e-85, 92.62% id in 244 aa, and to Bacteriophage phi-80 repressor protein CI SWALL:RPC1_BPPH8 (SWALL:P14819) (235 aa) fasta scores: E(): 1e-48, 58.67% id in 242 aa; regulator of pectin lyase production 2751259..2751993 Pectobacterium atrosepticum SCRI1043 2884506 YP_050531.1 CDS rdgB NC_004547.2 2752447 2752797 D Similar to Erwinia carotovora DNA-binding protein RdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta scores: E(): 2.2e-41, 94.01% id in 117 aa, and to Bacteriophage Mu middle operon regulator Mor or 17 or e17 SWALL:VMOR_BPMU (SWALL:P23848) (129 aa) fasta scores: E(): 4.3e-06, 34.28% id in 105 aa; regulator of pectin lyase production 2752447..2752797 Pectobacterium atrosepticum SCRI1043 2884507 YP_050532.1 CDS ECA2438 NC_004547.2 2753272 2754381 D Similar to Escherichia coli electron transport protein yccm or b0992 SWALL:YCCM_ECOLI (SWALL:P52636) (357 aa) fasta scores: E(): 1.4e-90, 68.2% id in 368 aa, and to Shewanella oneidensis iron-sulfur cluster-binding protein so4404 SWALL:AAN57371 (EMBL:AE015873) (375 aa) fasta scores: E(): 2.5e-35, 38.57% id in 337 aa; electron transport protein 2753272..2754381 Pectobacterium atrosepticum SCRI1043 2883453 YP_050533.1 CDS icd NC_004547.2 2754499 2755752 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(2754499..2755752) Pectobacterium atrosepticum SCRI1043 2882857 YP_050534.1 CDS ECA2440 NC_004547.2 2755854 2756510 D Similar to Yersinia pestis pseudouridine synthase ypo1640 or y1801 SWALL:Q8ZFQ3 (EMBL:AJ414149) (208 aa) fasta scores: E(): 9.5e-61, 69.71% id in 208 aa, and to Salmonella typhimurium ribosomal large subunit pseudouridine synthase ymfc or stm1237 SWALL:Q8ZPZ1 (EMBL:AE008754) (221 aa) fasta scores: E(): 4.4e-60, 69.44% id in 216 aa; RNA pseudouridylate synthase 2755854..2756510 Pectobacterium atrosepticum SCRI1043 2883454 YP_050535.1 CDS ECA2441 NC_004547.2 2756503 2756949 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri nudix hydrolase ymfb or b1134 or c1513 or z1863 or ecs1606 or sf1153 SWALL:YMFB_ECOLI (SWALL:P75965) (153 aa) fasta scores: E(): 2.6e-48, 75.67% id in 148 aa, and to Yersinia pestis hypothetical protein ypo1639 or y1800 SWALL:AAM85368 (EMBL:AJ414149) (148 aa) fasta scores: E(): 8.6e-46, 71.62% id in 148 aa; MutT family protein 2756503..2756949 Pectobacterium atrosepticum SCRI1043 2883455 YP_050536.1 CDS mnmA NC_004547.2 2757088 2758194 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2757088..2758194 Pectobacterium atrosepticum SCRI1043 2884241 YP_050537.1 CDS ECA2443 NC_004547.2 2758197 2758835 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2758197..2758835 Pectobacterium atrosepticum SCRI1043 2883456 YP_050538.1 CDS purB NC_004547.2 2759027 2760397 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2759027..2760397 Pectobacterium atrosepticum SCRI1043 2881844 YP_050539.1 CDS pehR NC_004547.2 2760640 2761329 D response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP 2760640..2761329 Pectobacterium atrosepticum SCRI1043 2881648 YP_050540.1 CDS pehS NC_004547.2 2761326 2762780 D Similar to Pectobacterium carotovorum subsp. carotovorum sensor protein PehS SWALL:Q9ZIN8 (EMBL:AF022772) (484 aa) fasta scores: E(): 6.6e-176, 92.35% id in 484 aa, and to Erwinia chrysanthemi PhoQ protein phoQ SWALL:CAD33238 (EMBL:AJ489252) (491 aa) fasta scores: E(): 4.1e-152, 76.97% id in 482 aa; sensor protein PhoQ 2761326..2762780 Pectobacterium atrosepticum SCRI1043 2885348 YP_050541.1 CDS ECA2447 NC_004547.2 2762917 2764038 D Similar to Yersinia pestis hypothetical protein Ypo1632 SWALL:Q8ZFQ9 (EMBL:AJ414149) (373 aa) fasta scores: E(): 2.6e-125, 77.74% id in 373 aa, and to Escherichia coli hypothetical protein ycfd or b1128 SWALL:YCFD_ECOLI (SWALL:P27431) (373 aa) fasta scores: E(): 2.6e-124, 77.08% id in 371 aa; hypothetical protein 2762917..2764038 Pectobacterium atrosepticum SCRI1043 2883435 YP_050542.1 CDS pepT NC_004547.2 2764123 2765355 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(2764123..2765355) Pectobacterium atrosepticum SCRI1043 2885132 YP_050543.1 CDS potA NC_004547.2 2765687 2766838 D functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 2765687..2766838 Pectobacterium atrosepticum SCRI1043 2883184 YP_050544.1 CDS potB NC_004547.2 2766822 2767682 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 2766822..2767682 Pectobacterium atrosepticum SCRI1043 2883185 YP_050545.1 CDS potC NC_004547.2 2767679 2768455 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 2767679..2768455 Pectobacterium atrosepticum SCRI1043 2883186 YP_050546.1 CDS potD NC_004547.2 2768546 2769589 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter periplasmic substrate-binding protein 2768546..2769589 Pectobacterium atrosepticum SCRI1043 2883076 YP_050547.1 CDS ogt NC_004547.2 2769657 2770193 R Similar to Escherichia coli, and Shigella flexneri methylated-DNA--protein-cysteine methyltransferase Ogt or b1335 or sf1835 SWALL:OGT_ECOLI (SWALL:P09168) (171 aa) fasta scores: E(): 1.3e-13, 45.79% id in 107 aa, and to Mycoplasma penetrans 6-O-methylguanine DNA methyltransferas mype1850 SWALL:BAC43976 (EMBL:AP004170) (176 aa) fasta scores: E(): 1.1e-30, 46.51% id in 172 aa. Also similar to ECA2208 (40.331% id. in 181 aa overlap); methylated DNA--protein-cysteine methyltransferase complement(2769657..2770193) Pectobacterium atrosepticum SCRI1043 2883544 YP_050548.1 CDS fsr NC_004547.2 2770376 2771476 R Similar to Escherichia coli fosmidomycin resistance protein Fsr or b0479 SWALL:FSR_ECOLI (SWALL:P52067) (406 aa) fasta scores: E(): 3.6e-77, 56.46% id in 356 aa, and to Pseudomonas putida antibiotic mfs transporter, pp2366 SWALL:AAN67979 (EMBL:AE016782) (420 aa) fasta scores: E(): 2.2e-89, 62.29% id in 358 aa; fosmidomycin resistance protein complement(2770376..2771476) Pectobacterium atrosepticum SCRI1043 2884054 YP_050549.1 CDS ECA2456 NC_004547.2 <2771527 2771685 D Partial CDS. Similar to the C-terminal regions of many including Pseudomonas aeruginosa probable transcriptional regulator pa2488 SWALL:Q9I0Z4 (EMBL:AE004676) (254 aa) fasta scores: E(): 0.0017, 50% id in 42 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20956 SWALL:AAO07868 (EMBL:AE016811) (259 aa) fasta scores: E(): 0.0035, 48.78% id in 41 aa; transcriptional regulator <2771527..2771685 Pectobacterium atrosepticum SCRI1043 2883436 YP_050550.1 CDS ECA2457 NC_004547.2 2771944 2772576 D Similar to Thauera aromatica BbsI SWALL:Q9KJE6 (EMBL:AF173961) (209 aa) fasta scores: E(): 2.2e-39, 47.82% id in 207 aa, and to Xanthomonas campestris hypothetical protein Xcc0182 xcc0182 SWALL:Q8PE01 (EMBL:AE012114) (203 aa) fasta scores: E(): 5.5e-35, 46.63% id in 208 aa; hypothetical protein 2771944..2772576 Pectobacterium atrosepticum SCRI1043 2883437 YP_050551.1 CDS ECA2458 NC_004547.2 2772573 2773439 D Similar to Yersinia pestis AraC-family transcriptional regulatory protein ypo1837 SWALL:Q8ZF81 (EMBL:AJ414150) (291 aa) fasta scores: E(): 2.9e-17, 29.28% id in 239 aa, and to Salmonella typhimurium bacterial regulatory protein, arac family stm1082 SWALL:Q8ZQ62 (EMBL:AE008747) (259 aa) fasta scores: E(): 1.9e-16, 31.32% id in 249 aa; AraC family transcriptional regulator 2772573..2773439 Pectobacterium atrosepticum SCRI1043 2883366 YP_050552.1 CDS prc NC_004547.2 2773681 2775696 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(2773681..2775696) Pectobacterium atrosepticum SCRI1043 2882305 YP_050553.1 CDS proQ NC_004547.2 2775716 2776465 R affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector complement(2775716..2776465) Pectobacterium atrosepticum SCRI1043 2885462 YP_050554.1 CDS ECA2461 NC_004547.2 2776550 2777056 R Similar to Yersinia pestis hypothetical protein Ypo1703 SWALL:Q8ZFK0 (EMBL:AJ414150) (165 aa) fasta scores: E(): 6.2e-43, 66.25% id in 160 aa, and to Shigella flexneri orf, conserved hypothetical protein yebr or sf1393 SWALL:AAN42994 (EMBL:AE015164) (165 aa) fasta scores: E(): 1.6e-41, 63.8% id in 163 aa; hypothetical protein complement(2776550..2777056) Pectobacterium atrosepticum SCRI1043 2883367 YP_050555.1 CDS ECA2462 NC_004547.2 2777360 2778640 D Similar to Yersinia pestis membrane protein ypo1702 or y1864 SWALL:AAM85431 (EMBL:AJ414150) (450 aa) fasta scores: E(): 7.4e-114, 68.47% id in 406 aa, and to Salmonella typhimurium inner membrane protein yebs or stm1848 SWALL:Q8ZNZ4 (EMBL:AE008782) (427 aa) fasta scores: E(): 1.7e-111, 65.69% id in 411 aa; hypothetical protein 2777360..2778640 Pectobacterium atrosepticum SCRI1043 2883368 YP_050556.1 CDS ECA2463 NC_004547.2 2778643 2781285 D Similar to Yersinia pestis hypothetical protein y1863 SWALL:AAM85430 (EMBL:AE013789) (885 aa) fasta scores: E(): 0, 70.97% id in 882 aa, and to Escherichia coli hypothetical protein yebt or b1834 SWALL:YEBT_ECOLI (SWALL:P76272) (877 aa) fasta scores: E(): 0, 68.98% id in 877 aa; hypothetical protein 2778643..2781285 Pectobacterium atrosepticum SCRI1043 2883369 YP_050557.1 CDS yebU NC_004547.2 2781410 2782864 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2781410..2782864 Pectobacterium atrosepticum SCRI1043 2883313 YP_050558.1 CDS ECA2465 NC_004547.2 2782998 2783189 D Similar to Escherichia coli hypothetical protein yebw yebw or b1837 SWALL:YEBW_ECOLI (SWALL:P76275) (63 aa) fasta scores: E(): 2e-19, 69.84% id in 63 aa, and to Salmonella typhi secreted protein sty1983 SWALL:Q8Z660 (EMBL:AL627272) (63 aa) fasta scores: E(): 1.6e-18, 65.07% id in 63 aa; hypothetical protein 2782998..2783189 Pectobacterium atrosepticum SCRI1043 2883314 YP_050559.1 CDS ECA2466 NC_004547.2 2783208 2783903 R Similar to Salmonella typhimurium inner membrane protein stm0381 SWALL:Q8ZRF2 (EMBL:AE008713) (237 aa) fasta scores: E(): 6.8e-42, 50.22% id in 227 aa, and to Pseudomonas putida conserved hypothetical protein pp1511 SWALL:AAN67132 (EMBL:AE016779) (229 aa) fasta scores: E(): 2e-31, 41.55% id in 231 aa; hypothetical protein complement(2783208..2783903) Pectobacterium atrosepticum SCRI1043 2883286 YP_050560.1 CDS ECA2467 NC_004547.2 2783943 2784188 R hypothetical protein complement(2783943..2784188) Pectobacterium atrosepticum SCRI1043 2883287 YP_050561.1 CDS ECA2468 NC_004547.2 2784267 2784494 D Similar to Salmonella typhimurium outer membrane protein ycfr or stm1214 SWALL:Q8ZQ03 (EMBL:AE008753) (85 aa) fasta scores: E(): 2.6e-06, 48.23% id in 85 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ybij precursor ybij or b0802 or c0886 or sf0752 SWALL:YBIJ_ECOLI (SWALL:P41038) (86 aa) fasta scores: E(): 1.3e-05, 52.32% id in 86 aa; hypothetical protein 2784267..2784494 Pectobacterium atrosepticum SCRI1043 2883288 YP_050562.1 CDS ECA2469 NC_004547.2 2784750 2785232 D Similar to Bradyrhizobium japonicum Bll0285 protein Bll0285 SWALL:BAC45550 (EMBL:AP005935) (134 aa) fasta scores: E(): 1.4e-09, 40.19% id in 102 aa; hypothetical protein 2784750..2785232 Pectobacterium atrosepticum SCRI1043 2883289 YP_050563.1 CDS ECA2470 NC_004547.2 2785656 2785964 D Similar to Shewanella oneidensis cold shock domain family protein so0733 SWALL:AAN53811 (EMBL:AE015518) (203 aa) fasta scores: E(): 1.3e-07, 47.14% id in 70 aa, and to Vibrio vulnificus cold shock domain family protein vv12532 SWALL:AAO10888 (EMBL:AE016805) (155 aa) fasta scores: E(): 5.8e-07, 57.5% id in 40 aa; hypothetical protein 2785656..2785964 Pectobacterium atrosepticum SCRI1043 2883203 YP_050564.1 CDS cspG NC_004547.2 2786183 2786395 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cold shock-like protein CspG or CspI or b0990 or c1123 or z1406 or ecs1145 or sf0991 SWALL:CSPG_ECOLI (SWALL:Q47130) (70 aa) fasta scores: E(): 8.2e-22, 80% id in 70 aa; cold shock protein complement(2786183..2786395) Pectobacterium atrosepticum SCRI1043 2883919 YP_050565.1 CDS ECA2472 NC_004547.2 2786926 2787282 R Similar to Escherichia coli, and Shigella flexneri hypothetical protein yeby precursor yeby or b1839 or sf1850 SWALL:YEBY_ECOLI (SWALL:P76277) (113 aa) fasta scores: E(): 7.8e-23, 56.63% id in 113 aa, and to Yersinia pestis exported protein ypo1786 or y2521 SWALL:Q8ZFC8 (EMBL:AJ414150) (118 aa) fasta scores: E(): 1.1e-22, 57.14% id in 112 aa; hypothetical protein complement(2786926..2787282) Pectobacterium atrosepticum SCRI1043 2883204 YP_050566.1 CDS ftnA NC_004547.2 2787564 2788070 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ferritin 1 SWALL:FTNA_ECOLI (SWALL:P23887) (165 aa) fasta scores: E(): 7.7e-40, 65.21% id in 161 aa; ferritin complement(2787564..2788070) Pectobacterium atrosepticum SCRI1043 2884055 YP_050567.1 CDS holE NC_004547.2 2788443 2788673 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri DNA polymerase III, theta subunit HolE or b1842 or c2252 or z2891 or ecs2552 or sf1852.1 SWALL:HOLE_ECOLI (SWALL:P28689) (76 aa) fasta scores: E(): 8.7e-18, 67.1% id in 76 aa; DNA polymerase III subunit theta 2788443..2788673 Pectobacterium atrosepticum SCRI1043 2882120 YP_050568.1 CDS ptrB NC_004547.2 2789028 2791079 R Similar to Escherichia coli protease II PtrB or Tlp or b1845 SWALL:PTRB_ECOLI (SWALL:P24555) (686 aa) fasta scores: E(): 2e-180, 63.93% id in 671 aa; protease II complement(2789028..2791079) Pectobacterium atrosepticum SCRI1043 2881863 YP_050569.1 CDS purT NC_004547.2 2791280 2792458 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 2791280..2792458 Pectobacterium atrosepticum SCRI1043 2884640 YP_050570.1 CDS eda NC_004547.2 2792647 2793288 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(2792647..2793288) Pectobacterium atrosepticum SCRI1043 2881725 YP_050571.1 CDS zwf NC_004547.2 2793456 2794931 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2793456..2794931) Pectobacterium atrosepticum SCRI1043 2882467 YP_050572.1 CDS hexR NC_004547.2 2795320 2796189 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2795320..2796189 Pectobacterium atrosepticum SCRI1043 2881801 YP_050573.1 CDS pykA NC_004547.2 2796565 2798007 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2796565..2798007 Pectobacterium atrosepticum SCRI1043 2882672 YP_050574.1 CDS msbB NC_004547.2 2798118 2799095 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(2798118..2799095) Pectobacterium atrosepticum SCRI1043 2881207 YP_050575.1 CDS ECA2483 NC_004547.2 2799272 2800594 R Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical metalloprotease yeba precursor yeba or b1856 or c2270 or sf1866 SWALL:YEBA_ECOLI (SWALL:P24204) (440 aa) fasta scores: E(): 6.7e-128, 75.11% id in 442 aa, and to Salmonella typhimurium peptidase yeba or stm1890 SWALL:Q8ZNV9 (EMBL:AE008784) (439 aa) fasta scores: E(): 5.8e-128, 75.05% id in 441 aa; hypothetical protein complement(2799272..2800594) Pectobacterium atrosepticum SCRI1043 2883205 YP_050576.1 CDS znuA NC_004547.2 2800607 2801608 R involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein complement(2800607..2801608) Pectobacterium atrosepticum SCRI1043 2882473 YP_050577.1 CDS znuC NC_004547.2 2801685 2802443 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 2801685..2802443 Pectobacterium atrosepticum SCRI1043 2882465 YP_050578.1 CDS znuB NC_004547.2 2802440 2803225 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 2802440..2803225 Pectobacterium atrosepticum SCRI1043 2882464 YP_050579.1 CDS ECA2487 NC_004547.2 2803319 2804281 R Similar to Haemophilus influenzae galactose operon repressor GalR or GalS or hi0821 SWALL:GALR_HAEIN (SWALL:P31766) (332 aa) fasta scores: E(): 5.7e-09, 31.02% id in 303 aa, and to Staphylococcus xylosus probable catabolite control protein A CcpA SWALL:CCPA_STAXY (SWALL:Q56194) (329 aa) fasta scores: E(): 2.5e-08, 26.36% id in 311 aa; LacI family transcriptional regulator complement(2803319..2804281) Pectobacterium atrosepticum SCRI1043 2883088 YP_050580.1 CDS ECA2488 NC_004547.2 2804738 2806048 D Similar to Lactobacillus casei PTS system, lactose-specific IIbc component LacE SWALL:PTLB_LACCA (SWALL:P24400) (577 aa) fasta scores: E(): 7.3e-42, 30.84% id in 428 aa, and to Vibrio cholerae PTS system, cellobiose-specific iic component vc1282 SWALL:Q9KSH4 (EMBL:AE004207) (446 aa) fasta scores: E(): 2.2e-93, 47.67% id in 430 aa; PTS system cellobiose-specific transporter subunit IIC 2804738..2806048 Pectobacterium atrosepticum SCRI1043 2883089 YP_050581.1 CDS ECA2489 NC_004547.2 2806364 2806672 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 1.8e-14, 48.45% id in 97 aa; PTS system cellobiose-specific transporter subunit IIA 2806364..2806672 Pectobacterium atrosepticum SCRI1043 2883090 YP_050582.1 CDS ECA2490 NC_004547.2 2806843 2808222 D Weakly similar to Klebsiella pneumoniae maltoporin precursor LamB SWALL:LAMB_KLEPN (SWALL:P31242) (429 aa) fasta scores: E(): 7.1e-14, 25.87% id in 398 aa, and to Escherichia coli maltoporin precursor LamB or MalB or b4036 SWALL:LAMB_ECOLI (SWALL:P02943) (446 aa) fasta scores: E(): 3.4e-05, 24.11% id in 394 aa; maltoporin 2806843..2808222 Pectobacterium atrosepticum SCRI1043 2883091 YP_050583.1 CDS ruvB NC_004547.2 2808294 2809298 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2808294..2809298) Pectobacterium atrosepticum SCRI1043 2884445 YP_050584.1 CDS ruvA NC_004547.2 2809306 2809923 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2809306..2809923) Pectobacterium atrosepticum SCRI1043 2884444 YP_050585.1 CDS ruvC NC_004547.2 2810151 2810663 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2810151..2810663) Pectobacterium atrosepticum SCRI1043 2884439 YP_050586.1 CDS ECA2494 NC_004547.2 2810744 2811487 R Similar to Yersinia pestis hypothetical protein Ypo2055 SWALL:Q8ZEU8 (EMBL:AJ414151) (247 aa) fasta scores: E(): 2.7e-83, 91.09% id in 247 aa, and to Escherichia coli protein yebc or b1864 SWALL:YEBC_ECOLI (SWALL:P24237) (246 aa) fasta scores: E(): 4.9e-81, 87.44% id in 247 aa; hypothetical protein complement(2810744..2811487) Pectobacterium atrosepticum SCRI1043 2885589 YP_050587.1 CDS ntpA NC_004547.2 2811511 2811954 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(2811511..2811954) Pectobacterium atrosepticum SCRI1043 2884893 YP_050588.1 CDS aspS NC_004547.2 2811956 2813755 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2811956..2813755) Pectobacterium atrosepticum SCRI1043 2882888 YP_050589.1 CDS ECA2497 NC_004547.2 2814296 2815513 D Similar to Vibrio vulnificus predicted signal transduction protein vv12911 SWALL:AAO11244 (EMBL:AE016806) (404 aa) fasta scores: E(): 4.7e-60, 41.33% id in 404 aa, and to Bacillus subtilis hypothetical protein YuxH SWALL:YUXH_BACSU (SWALL:P14203) (409 aa) fasta scores: E(): 6e-34, 30.26% id in 413 aa; signal transduction protein 2814296..2815513 Pectobacterium atrosepticum SCRI1043 2885590 YP_050590.1 CDS ECA2498 NC_004547.2 2815601 2816095 D Similar to Yersinia pestis hypothetical protein ypo2052 or y2259 SWALL:Q8ZEV1 (EMBL:AJ414151) (271 aa) fasta scores: E(): 6.2e-52, 74.84% id in 159 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yece or stm1903 or sty2111 SWALL:Q8XFY8 (EMBL:AE008785) (272 aa) fasta scores: E(): 2.2e-46, 66.25% id in 160 aa; hypothetical protein 2815601..2816095 Pectobacterium atrosepticum SCRI1043 2882947 YP_050591.1 CDS ECA2499 NC_004547.2 2816171 2816962 R Similar to Shigella flexneri orf, hypothetical protein sf1053 SWALL:AAN42675 (EMBL:AE015133) (167 aa) fasta scores: E(): 3.2e-16, 43.42% id in 152 aa; hypothetical protein complement(2816171..2816962) Pectobacterium atrosepticum SCRI1043 2882948 YP_050592.1 CDS ECA2500 NC_004547.2 2816962 2819196 R DNA-binding protein complement(2816962..2819196) Pectobacterium atrosepticum SCRI1043 2882949 YP_050593.1 CDS ECA2501 NC_004547.2 2819423 2820118 R hypothetical protein complement(2819423..2820118) Pectobacterium atrosepticum SCRI1043 2882950 YP_050594.1 CDS ECA2502 NC_004547.2 2820115 2820354 R hypothetical protein complement(2820115..2820354) Pectobacterium atrosepticum SCRI1043 2885459 YP_050595.1 CDS ECA2503 NC_004547.2 2820771 2820968 R Similar to Paramecium bursaria chlorella virus 1 A641L protein a641L SWALL:O41123 (EMBL:U42580) (85 aa) fasta scores: E(): 9.9, 36.36% id in 44 aa; phage-like protein complement(2820771..2820968) Pectobacterium atrosepticum SCRI1043 2885460 YP_050596.1 CDS ECA2504 NC_004547.2 2821764 2822402 R Similar to Escherichia coli resolvase ParA SWALL:PAA4_ECOLI (SWALL:P22996) (219 aa) fasta scores: E(): 6.8e-15, 32.81% id in 192 aa, and to Agrobacterium tumefaciens resolvase ParA or atu3849 or agr_l_1981 SWALL:Q8U979 (EMBL:AE009315) (250 aa) fasta scores: E(): 5.3e-41, 59.11% id in 203 aa; resolvase complement(2821764..2822402) Pectobacterium atrosepticum SCRI1043 2885461 YP_050597.1 CDS ECA2505 NC_004547.2 2823149 2823316 D hypothetical protein 2823149..2823316 Pectobacterium atrosepticum SCRI1043 2881558 YP_050598.1 CDS ECA2506 NC_004547.2 2823641 2824555 R hypothetical protein complement(2823641..2824555) Pectobacterium atrosepticum SCRI1043 2881559 YP_050599.1 CDS ECA2508 NC_004547.2 2825271 2826881 R Similar to Bacillus subtilis DNA recombinase CisA or spoivcA SWALL:CISA_BACSU (SWALL:P17867) (500 aa) fasta scores: E(): 0.03, 23.63% id in 440 aa, and to Staphylococcus aureus cassette chromosome recombinase B CcrB SWALL:Q8RPD2 (EMBL:AF411935) (442 aa) fasta scores: E(): 7e-05, 23.07% id in 442 aa, and to Bacteriophage U153 u153 InTegrase Int SWALL:Q8LTD8 (EMBL:AJ417489) (452 aa) fasta scores: E(): 0.77, 23.1% id in 489 aa; integrase/recombinase complement(2825271..2826881) Pectobacterium atrosepticum SCRI1043 2881560 YP_050600.1 CDS ECA2509 NC_004547.2 <2826929 2827279 D Similar to the C-terminal regions of Yersinia pestis hypothetical protein ypo2052 or y2259 SWALL:Q8ZEV1 (EMBL:AJ414151) (271 aa) fasta scores: E(): 1.2e-23, 58.26% id in 115 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yece or stm1903 or sty2111 SWALL:Q8XFY8 (EMBL:AE008785) (272 aa) fasta scores: E(): 2.6e-21, 54.78% id in 115 aa; hypothetical protein <2826929..2827279 Pectobacterium atrosepticum SCRI1043 2881561 YP_050601.1 CDS ECA2510 NC_004547.2 2827436 2827831 D Similar to Yersinia pestis membrane protein ypo2051 or y2260 SWALL:Q8ZEV2 (EMBL:AJ414151) (131 aa) fasta scores: E(): 8.2e-45, 81.53% id in 130 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein yecn or stm1904 or sty2112 SWALL:Q8XFZ4 (EMBL:AE008785) (131 aa) fasta scores: E(): 1.2e-40, 71.75% id in 131 aa; hypothetical protein 2827436..2827831 Pectobacterium atrosepticum SCRI1043 2881984 YP_050602.1 CDS ECA2511 NC_004547.2 2828026 2828805 D Similar to Yersinia pestis hypothetical protein ypo2050 or y2261 SWALL:AAM85821 (EMBL:AJ414151) (267 aa) fasta scores: E(): 2.9e-78, 80% id in 250 aa, and to Escherichia coli protein yeco or b1870 SWALL:YECO_ECOLI (SWALL:P76290) (247 aa) fasta scores: E(): 4.3e-78, 80.56% id in 247 aa; hypothetical protein 2828026..2828805 Pectobacterium atrosepticum SCRI1043 2881985 YP_050603.1 CDS ECA2512 NC_004547.2 2828802 2829785 D Similar to Yersinia pestis hypothetical protein ypo2049 or y2262 SWALL:Q8ZEV4 (EMBL:AJ414151) (323 aa) fasta scores: E(): 1.3e-113, 81.42% id in 323 aa, and to Salmonella typhi hypothetical protein Sty2114 SWALL:Q8Z5W0 (EMBL:AL627272) (323 aa) fasta scores: E(): 2.8e-105, 76.78% id in 323 aa; hypothetical protein 2828802..2829785 Pectobacterium atrosepticum SCRI1043 2881900 YP_050604.1 CDS ECA2513 NC_004547.2 2830278 2830577 R hypothetical protein complement(2830278..2830577) Pectobacterium atrosepticum SCRI1043 2881901 YP_050605.1 CDS ECA2514 NC_004547.2 2830707 2831090 R hypothetical protein complement(2830707..2831090) Pectobacterium atrosepticum SCRI1043 2881902 YP_050606.1 CDS ECA2515 NC_004547.2 2831105 2831689 D hypothetical protein 2831105..2831689 Pectobacterium atrosepticum SCRI1043 2881903 YP_050607.1 CDS ECA2516 NC_004547.2 2831703 2832305 D hypothetical protein 2831703..2832305 Pectobacterium atrosepticum SCRI1043 2882136 YP_050608.1 CDS ECA2517 NC_004547.2 2832686 2832958 D hypothetical protein 2832686..2832958 Pectobacterium atrosepticum SCRI1043 2882137 YP_050609.1 CDS cutC NC_004547.2 2833114 2833872 R Similar to Escherichia coli, and Shigella flexneri copper homeostasis protein CutC or CutCM or b1874 or sf1915 SWALL:CUTC_ECOLI (SWALL:P46719) (248 aa) fasta scores: E(): 1.9e-55, 57.74% id in 239 aa; copper homeostasis protein CutC complement(2833114..2833872) Pectobacterium atrosepticum SCRI1043 2883377 YP_050610.1 CDS ECA2519 NC_004547.2 2834311 2834895 R Similar to Escherichia coli protein yecm or b1875 SWALL:YECM_ECOLI (SWALL:P52007) (188 aa) fasta scores: E(): 1.5e-43, 59.88% id in 177 aa, and to Salmonella typhi hypothetical protein Sty2116 SWALL:Q8Z5V8 (EMBL:AL627272) (189 aa) fasta scores: E(): 1.4e-42, 58.98% id in 178 aa; hypothetical protein complement(2834311..2834895) Pectobacterium atrosepticum SCRI1043 2882138 YP_050611.1 CDS argS NC_004547.2 2835515 2837245 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2835515..2837245 Pectobacterium atrosepticum SCRI1043 2884135 YP_050612.1 CDS mviN NC_004547.2 2837343 2838878 R Similar to Escherichia coli, and Escherichia coli O157:H7 virulence factor MviN homolog MviN or b1069 or z1707 or ecs1447 SWALL:MVIN_ECOLI (SWALL:P75932) (511 aa) fasta scores: E(): 1.2e-160, 81.99% id in 511 aa, and to Yersinia pestis membrane protein mvin or ypo2043 or y2269 SWALL:AAM85829 (EMBL:AJ414151) (511 aa) fasta scores: E(): 5.1e-165, 84.51% id in 510 aa; virulence factor complement(2837343..2838878) Pectobacterium atrosepticum SCRI1043 2885297 YP_050613.1 CDS mviM NC_004547.2 2839006 2839971 R Similar to Salmonella typhimurium virulence factor MviM or stm1169 SWALL:MVIM_SALTY (SWALL:P37168) (307 aa) fasta scores: E(): 2.9e-71, 63.3% id in 297 aa, and to Escherichia coli virulence factor MviM homolog MviM or b1068 SWALL:MVIM_ECOLI (SWALL:P75931) (307 aa) fasta scores: E(): 1.2e-67, 60% id in 300 aa; virulence factor complement(2839006..2839971) Pectobacterium atrosepticum SCRI1043 2885296 YP_050614.1 CDS ECA2523 NC_004547.2 2840001 2840639 R Similar to Escherichia coli hypothetical protein yceh or b1067 SWALL:YCEH_ECOLI (SWALL:P29217) (215 aa) fasta scores: E(): 2e-56, 72.64% id in 212 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yceh or stm1168 or sty1206 SWALL:Q8XF09 (EMBL:AE008750) (215 aa) fasta scores: E(): 1.9e-54, 69.81% id in 212 aa; hypothetical protein complement(2840001..2840639) Pectobacterium atrosepticum SCRI1043 2882055 YP_050615.1 CDS rimJ NC_004547.2 2840649 2841233 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri ribosomal-protein-alanine acetyltransferase RimJ or b1066 or z1703 or ecs1444 or sf1072 SWALL:RIMJ_ECOLI (SWALL:P09454) (194 aa) fasta scores: E(): 3.3e-67, 77.31% id in 194 aa; ribosomal-protein-S5-alanine N-acetyltransferase complement(2840649..2841233) Pectobacterium atrosepticum SCRI1043 2884735 YP_050616.1 CDS ECA2525 NC_004547.2 2841548 2842753 D Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 2841548..2842753 Pectobacterium atrosepticum SCRI1043 2882056 YP_050617.1 CDS grxB NC_004547.2 2842935 2843582 D cofactor involved in the reduction of disulfides; glutaredoxin 2842935..2843582 Pectobacterium atrosepticum SCRI1043 2884047 YP_050618.1 CDS ECA2527 NC_004547.2 2843769 2844335 D Similar to Yersinia pestis lipoprotein ypo2039 SWALL:Q8ZEW4 (EMBL:AJ414151) (187 aa) fasta scores: E(): 2.6e-47, 73.93% id in 188 aa, and to Escherichia coli, and Shigella flexneri lipoprotein yceb precursor yceb or b1063 or sf1069 SWALL:YCEB_ECOLI (SWALL:P09995) (186 aa) fasta scores: E(): 2.3e-40, 65.02% id in 183 aa; hypothetical protein 2843769..2844335 Pectobacterium atrosepticum SCRI1043 2882057 YP_050619.1 CDS ECA2528 NC_004547.2 2844408 2844986 R Similar to Yersinia pestis hypothetical protein ypo2038 or y2274 SWALL:AAM85834 (EMBL:AJ414151) (186 aa) fasta scores: E(): 2.8e-45, 67.22% id in 180 aa, and to Escherichia coli hypothetical protein ycdy or b1035 SWALL:YCDY_ECOLI (SWALL:P75915) (184 aa) fasta scores: E(): 1.1e-41, 60.42% id in 187 aa; hypothetical protein complement(2844408..2844986) Pectobacterium atrosepticum SCRI1043 2882058 YP_050620.1 CDS ECA2529 NC_004547.2 2845033 2845770 R Similar to Yersinia pestis hypothetical protein Ypo2037 SWALL:Q8ZEW6 (EMBL:AJ414151) (245 aa) fasta scores: E(): 1.1e-84, 84.89% id in 245 aa, and to Salmonella typhimurium, and Salmonella typhi histidinol phosphatase and related hydrolases of the php family ycdx or stm1136 or sty1173 SWALL:Q8XGW8 (EMBL:AE008749) (245 aa) fasta scores: E(): 1.8e-76, 75.1% id in 245 aa; hydrolase complement(2845033..2845770) Pectobacterium atrosepticum SCRI1043 2881513 YP_050621.1 CDS ECA2530 NC_004547.2 2846431 2847990 R Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 2.1e-53, 42.66% id in 525 aa, and to Ralstonia solanacearum probable methyl-accepting chemotaxis transducer transmembrane protein rsc1155 or rs04596 SWALL:Q8Y089 (EMBL:AL646063) (629 aa) fasta scores: E(): 5e-74, 47.39% id in 538 aa; methyl-accepting chemotaxis protein complement(2846431..2847990) Pectobacterium atrosepticum SCRI1043 2881514 YP_050622.1 CDS ECA2531 NC_004547.2 2848900 2849466 R Similar to Yersinia pestis lipoprotein protein ypo1422 or y2746 SWALL:Q8ZG84 (EMBL:AJ414148) (192 aa) fasta scores: E(): 4.8e-43, 62.43% id in 189 aa, and to Salmonella typhimurium, and Salmonella typhi outer membrane protein ymba or stm1065 or sty1086 SWALL:Q8XG15 (EMBL:AE008746) (187 aa) fasta scores: E(): 2.6e-38, 54.54% id in 187 aa; lipoprotein complement(2848900..2849466) Pectobacterium atrosepticum SCRI1043 2881562 YP_050623.1 CDS pqiB NC_004547.2 2849466 2851106 R Similar to Escherichia coli paraquat-inducible protein B PqiB or Pqi5b or b0951 SWALL:PQIB_ECOLI (SWALL:P43671) (546 aa) fasta scores: E(): 3.8e-141, 66.72% id in 544 aa; paraquat-inducible protein B complement(2849466..2851106) Pectobacterium atrosepticum SCRI1043 2882333 YP_050624.1 CDS pqiA NC_004547.2 2851093 2852337 R Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein A PqiA or Pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.7e-111, 66.42% id in 411 aa; paraquat-inducible protein A complement(2851093..2852337) Pectobacterium atrosepticum SCRI1043 2882332 YP_050625.1 CDS uup NC_004547.2 2852540 2854450 R Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase complement(2852540..2854450) Pectobacterium atrosepticum SCRI1043 2882958 YP_050626.1 CDS rlmL NC_004547.2 2854454 2856571 R catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase complement(2854454..2856571) Pectobacterium atrosepticum SCRI1043 2881563 YP_050627.1 CDS ECA2536 NC_004547.2 2856685 2857788 D Similar to Yersinia pestis iron-sulfur binding protein ypo1417 or y2752 SWALL:Q8ZG89 (EMBL:AJ414148) (370 aa) fasta scores: E(): 1.8e-107, 70.76% id in 366 aa, and to Salmonella typhimurium iron-sulfur protein stm1060 SWALL:Q8ZQ74 (EMBL:AE008746) (369 aa) fasta scores: E(): 1.3e-97, 65.04% id in 369 aa; iron-sulfur binding protein 2856685..2857788 Pectobacterium atrosepticum SCRI1043 2881564 YP_050628.1 CDS ECA2537 NC_004547.2 2857854 2858441 R Similar to Yersinia pestis hypothetical protein ypo1416 or y2753 SWALL:AAM86305 (EMBL:AJ414148) (183 aa) fasta scores: E(): 2e-44, 62.42% id in 173 aa, and to Escherichia coli hypothetical protein ycbw or b0946 SWALL:YCBW_ECOLI (SWALL:P75862) (180 aa) fasta scores: E(): 7.3e-42, 60.47% id in 167 aa; hypothetical protein complement(2857854..2858441) Pectobacterium atrosepticum SCRI1043 2881565 YP_050629.1 CDS pyrD NC_004547.2 2858643 2859653 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(2858643..2859653) Pectobacterium atrosepticum SCRI1043 2882670 YP_050630.1 CDS pepN NC_004547.2 2859857 2862472 R Similar to Escherichia coli aminopeptidase N PepN or b0932 SWALL:AMPN_ECOLI (SWALL:P04825) (869 aa) fasta scores: E(): 0, 75.66% id in 867 aa; aminopeptidase complement(2859857..2862472) Pectobacterium atrosepticum SCRI1043 2885190 YP_050631.1 CDS pncB NC_004547.2 2862696 2863901 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2862696..2863901 Pectobacterium atrosepticum SCRI1043 2883276 YP_050632.1 CDS asnC NC_004547.2 2864092 2865492 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2864092..2865492 Pectobacterium atrosepticum SCRI1043 2885587 YP_050633.1 CDS ompN NC_004547.2 2865788 2866900 D Similar to Escherichia coli outer membrane protein N precursor OmpN or b1377 SWALL:OMPN_ECOLI (SWALL:P77747) (377 aa) fasta scores: E(): 1.1e-76, 53.86% id in 388 aa; outer membrane protein 2865788..2866900 Pectobacterium atrosepticum SCRI1043 2883329 YP_050634.1 CDS aspC NC_004547.2 2867225 2868415 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2867225..2868415 Pectobacterium atrosepticum SCRI1043 2885554 YP_050635.1 CDS ECA2544 NC_004547.2 2868487 2869134 R Similar to Yersinia pestis metallo-beta-lactamase superfamily protein ypo1409 or y2761 SWALL:Q8ZG96 (EMBL:AJ414148) (215 aa) fasta scores: E(): 8.9e-67, 72.55% id in 215 aa, and to Escherichia coli hypothetical protein ycbl or b0927 SWALL:YCBL_ECOLI (SWALL:P75849) (215 aa) fasta scores: E(): 3.5e-65, 70.23% id in 215 aa; metallo-beta-lactamase complement(2868487..2869134) Pectobacterium atrosepticum SCRI1043 2881486 YP_050636.1 CDS ECA2545 NC_004547.2 2869216 2869764 R Similar to Yersinia pestis exported protein ypo1408 or y2762 SWALL:Q8ZG97 (EMBL:AJ414148) (182 aa) fasta scores: E(): 4.6e-60, 82.41% id in 182 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ycbk or b0926 or c1068 or z1273 or ecs1009 or sf0923 SWALL:YCBK_ECOLI (SWALL:P75848) (182 aa) fasta scores: E(): 5.1e-56, 78.57% id in 182 aa; hypothetical protein complement(2869216..2869764) Pectobacterium atrosepticum SCRI1043 2881487 YP_050637.1 CDS ECA2546 NC_004547.2 2869944 2871686 R Similar to Yersinia pestis exported protein ypo1407 or y2763 SWALL:AAM86315 (EMBL:AJ414148) (618 aa) fasta scores: E(): 1.4e-92, 60.48% id in 615 aa, and to Vibrio cholerae hypothetical protein Vc1268 SWALL:Q9KSI8 (EMBL:AE004206) (524 aa) fasta scores: E(): 7.1e-47, 36.56% id in 495 aa; hypothetical protein complement(2869944..2871686) Pectobacterium atrosepticum SCRI1043 2881488 YP_050638.1 CDS mukB NC_004547.2 2872108 2876547 R SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB complement(2872108..2876547) Pectobacterium atrosepticum SCRI1043 2881597 YP_050639.1 CDS mukE NC_004547.2 2876601 2877296 R acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E complement(2876601..2877296) Pectobacterium atrosepticum SCRI1043 2881702 YP_050640.1 CDS mukF NC_004547.2 2877304 2878629 R acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F complement(2877304..2878629) Pectobacterium atrosepticum SCRI1043 2881703 YP_050641.1 CDS smtA NC_004547.2 2878626 2879411 R involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA complement(2878626..2879411) Pectobacterium atrosepticum SCRI1043 2884377 YP_050642.1 CDS ECA2551 NC_004547.2 2879580 2880428 D Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ycbc or b0920 or z1267 or ecs1003 SWALL:YCBC_ECOLI (SWALL:P36565) (259 aa) fasta scores: E(): 2.7e-64, 65.25% id in 259 aa, and to Salmonella typhi membrane protein sty0992 SWALL:Q8Z7Z8 (EMBL:AL627268) (258 aa) fasta scores: E(): 6.7e-65, 66.02% id in 259 aa; hypothetical protein 2879580..2880428 Pectobacterium atrosepticum SCRI1043 2881416 YP_050643.1 CDS ECA2552 NC_004547.2 2880380 2881273 R Similar to Yersinia pestis hypothetical protein Ypo1401 SWALL:Q8ZGA3 (EMBL:AJ414148) (297 aa) fasta scores: E(): 4.9e-98, 73.4% id in 297 aa, and to Salmonella typhimurium mukf protein stm0989 SWALL:Q8ZQB9 (EMBL:AE008742) (297 aa) fasta scores: E(): 2e-77, 58.78% id in 296 aa; hypothetical protein complement(2880380..2881273) Pectobacterium atrosepticum SCRI1043 2881417 YP_050644.1 CDS ECA2553 NC_004547.2 2881677 2883083 R Similar to Erwinia chrysanthemi pectate lyase L precursor PelL SWALL:PELL_ERWCH (SWALL:Q47473) (425 aa) fasta scores: E(): 9.3e-21, 39.57% id in 422 aa, and to Erwinia chrysanthemi pectate lyase PelL1 SWALL:Q9RP65 (EMBL:AF171228) (425 aa) fasta scores: E(): 2.9e-20, 37.79% id in 418 aa; pectate lyase complement(2881677..2883083) Pectobacterium atrosepticum SCRI1043 2881418 YP_050645.1 CDS kdsB NC_004547.2 2883416 2884168 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2883416..2884168) Pectobacterium atrosepticum SCRI1043 2884537 YP_050646.1 CDS ECA2555 NC_004547.2 2884165 2884347 R Similar to Yersinia pestis hypothetical protein Ypo1399 SWALL:Q8ZGA5 (EMBL:AJ414148) (60 aa) fasta scores: E(): 7.1e-19, 85.96% id in 57 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein ycar or stm0987 or sty0989 SWALL:Q8XEM5 (EMBL:AE008742) (60 aa) fasta scores: E(): 9.9e-17, 75.43% id in 57 aa; hypothetical protein complement(2884165..2884347) Pectobacterium atrosepticum SCRI1043 2881419 YP_050647.1 CDS lpxK NC_004547.2 2884459 2885460 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(2884459..2885460) Pectobacterium atrosepticum SCRI1043 2882687 YP_050648.1 CDS msbA NC_004547.2 2885457 2887241 R involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding protein/permease complement(2885457..2887241) Pectobacterium atrosepticum SCRI1043 2882004 YP_050649.1 CDS ECA2558 NC_004547.2 2887243 2889516 R Similar to Yersinia pestis membrane protein ypo1394 or y2778 SWALL:Q8ZGB0 (EMBL:AJ414148) (763 aa) fasta scores: E(): 7.2e-161, 50.19% id in 763 aa, and to Salmonella typhi competence-related protein sty0984 SWALL:Q8Z802 (EMBL:AL627268) (754 aa) fasta scores: E(): 7.2e-126, 42.52% id in 762 aa; hypothetical protein complement(2887243..2889516) Pectobacterium atrosepticum SCRI1043 2881914 YP_050650.1 CDS ECA2559 NC_004547.2 2889900 2890358 R Similar to Yersinia pestis, and Yersinia pseudotuberculosis transposase for the IS1541 insertion element SWALL:Q9X9F5 (EMBL:AJ414159) (152 aa) fasta scores: E(): 4.9e-63, 96.05% id in 152 aa; transposase for the IS1541 insertion element complement(2889900..2890358) Pectobacterium atrosepticum SCRI1043 2881915 YP_050651.1 CDS ECA2560 NC_004547.2 2890553 2890870 R Similar to Yersinia pestis hypothetical protein Ypo1560 SWALL:Q8ZFW5 (EMBL:AJ414149) (105 aa) fasta scores: E(): 3e-31, 94.28% id in 105 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein YeeX or b2007 or c2534 or sf2067 SWALL:YEEX_ECOLI (SWALL:P76367) (109 aa) fasta scores: E(): 3.5e-27, 85.14% id in 101 aa; hypothetical protein complement(2890553..2890870) Pectobacterium atrosepticum SCRI1043 2881951 YP_050652.1 CDS ECA2561 NC_004547.2 2891200 2891958 R Similar to Yersinia pestis iron ABC transporter, ATP-binding protein ypo4025 or FecE or y4046 SWALL:AAM87590 (EMBL:AJ414160) (252 aa) fasta scores: E(): 2.1e-63, 72.61% id in 252 aa, and to Brucella melitensis iron bmeii0604 SWALL:Q8YCC8 (EMBL:AE009696) (252 aa) fasta scores: E(): 1.6e-54, 61.75% id in 251 aa; iron ABC transporter ATP-binding protein complement(2891200..2891958) Pectobacterium atrosepticum SCRI1043 2881952 YP_050653.1 CDS ECA2562 NC_004547.2 2891955 2892962 R Similar to Yersinia pestis iron transport permease ypo4024 SWALL:Q8ZA02 (EMBL:AJ414160) (335 aa) fasta scores: E(): 3.2e-76, 66.13% id in 313 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu2475 or agr_c_4491 SWALL:Q8UCK8 (EMBL:AE009194) (322 aa) fasta scores: E(): 8.2e-58, 51.63% id in 306 aa; iron ABC transporter permease complement(2891955..2892962) Pectobacterium atrosepticum SCRI1043 2881953 YP_050654.1 CDS ECA2563 NC_004547.2 2892949 2893911 R Similar to Yersinia pestis iron transport permease ypo4023 or y4044 SWALL:Q8ZA03 (EMBL:AJ414160) (319 aa) fasta scores: E(): 2.3e-88, 73.18% id in 317 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu2474 or agr_c_4489 SWALL:Q8UCK9 (EMBL:AE009194) (321 aa) fasta scores: E(): 5.5e-66, 55.76% id in 321 aa; iron ABC transporter permease complement(2892949..2893911) Pectobacterium atrosepticum SCRI1043 2881954 YP_050655.1 CDS ECA2564 NC_004547.2 2893923 2894873 R Similar to Yersinia pestis solute-binding iron ABC transport protein y4043 SWALL:AAM87587 (EMBL:AE014006) (329 aa) fasta scores: E(): 4.7e-74, 62.54% id in 315 aa, and to Brucella melitensis ferric anguibactin-binding protein bmeii0607 SWALL:Q8YCC5 (EMBL:AE009697) (293 aa) fasta scores: E(): 1.2e-49, 48.09% id in 289 aa; iron ABC transporter priplasmic binding protein complement(2893923..2894873) Pectobacterium atrosepticum SCRI1043 2885264 YP_050656.1 CDS sbcB NC_004547.2 2895155 2896582 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2895155..2896582 Pectobacterium atrosepticum SCRI1043 2884432 YP_050657.1 CDS ECA2566 NC_004547.2 2896643 2898013 R Similar to Yersinia pestis amino acid permease ypo1557 or y2612 SWALL:Q8ZFW8 (EMBL:AJ414149) (463 aa) fasta scores: E(): 7.8e-146, 82.96% id in 446 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 amino acid transporter protein yeef or t0806 SWALL:AAO68497 (EMBL:AE016836) (454 aa) fasta scores: E(): 7.5e-138, 77.35% id in 446 aa; amino acid permease complement(2896643..2898013) Pectobacterium atrosepticum SCRI1043 2885265 YP_050658.1 CDS ECA2567 NC_004547.2 2898003 2898245 R hypothetical protein complement(2898003..2898245) Pectobacterium atrosepticum SCRI1043 2885266 YP_050659.1 CDS ECA2568 NC_004547.2 2898658 2899413 R Similar to Yersinia pestis hypothetical protein ypo3220 or y0968 SWALL:Q8ZC10 (EMBL:AJ414156) (252 aa) fasta scores: E(): 2.3e-48, 50.8% id in 250 aa, and to Salmonella typhimurium inner membrane protein ycgr or stm1798 SWALL:Q8ZP19 (EMBL:AE008780) (244 aa) fasta scores: E(): 9.8e-33, 42.73% id in 241 aa; hypothetical protein complement(2898658..2899413) Pectobacterium atrosepticum SCRI1043 2885229 YP_050660.1 CDS citG NC_004547.2 2899810 2900715 R Similar to Escherichia coli 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase CitG or b0613 SWALL:CITG_ECOLI (SWALL:P77231) (292 aa) fasta scores: E(): 2.3e-42, 50% id in 262 aa, and to Klebsiella pneumoniae 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase CitG SWALL:CITG_KLEPN (SWALL:P45414) (302 aa) fasta scores: E(): 1.3e-48, 53.33% id in 270 aa; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase complement(2899810..2900715) Pectobacterium atrosepticum SCRI1043 2884969 YP_050661.1 CDS citX NC_004547.2 2900693 2901220 R Similar to Escherichia coli, and Escherichia coli O157:H7 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase citx or b0614 or z0758 or ecs0653 SWALL:CITX_ECOLI (SWALL:P77563) (183 aa) fasta scores: E(): 6.7e-24, 40.85% id in 164 aa; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase complement(2900693..2901220) Pectobacterium atrosepticum SCRI1043 2884961 YP_050662.1 CDS citF NC_004547.2 2901247 2902776 R Similar to Klebsiella pneumoniae citrate lyase alpha chain CitF SWALL:CILA_KLEPN (SWALL:P45413) (508 aa) fasta scores: E(): 1.3e-132, 67.52% id in 508 aa, and to Escherichia coli citrate lyase alpha chain citf or b0615 SWALL:CILA_ECOLI (SWALL:P75726) (510 aa) fasta scores: E(): 4.6e-131, 67.25% id in 510 aa; citrate lyase subunit alpha complement(2901247..2902776) Pectobacterium atrosepticum SCRI1043 2884968 YP_050663.1 CDS citE NC_004547.2 2902830 2903705 R Similar to Klebsiella pneumoniae citrate lyase beta chain CitE SWALL:CILB_KLEPN (SWALL:P17725) (289 aa) fasta scores: E(): 1.3e-80, 72.56% id in 288 aa, and to Escherichia coli, and Escherichia coli O6 citrate lyase beta chain CitE or b0616 or c0706 SWALL:CILB_ECOLI (SWALL:P77770) (302 aa) fasta scores: E(): 2.7e-74, 65.17% id in 290 aa; citrate lyase subunit beta complement(2902830..2903705) Pectobacterium atrosepticum SCRI1043 2884967 YP_050664.1 CDS citD NC_004547.2 2903705 2903995 R acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma complement(2903705..2903995) Pectobacterium atrosepticum SCRI1043 2884973 YP_050665.1 CDS citC NC_004547.2 2904019 2905083 R Similar to Klebsiella pneumoniae [citrate [pro-3s]-lyase] ligase CitC SWALL:CITC_KLEPN (SWALL:P45410) (342 aa) fasta scores: E(): 7.6e-56, 43.24% id in 333 aa, and to Escherichia coli [citrate [pro-3s]-lyase] ligase CitC or b0618 SWALL:CITC_ECOLI (SWALL:P77390) (352 aa) fasta scores: E(): 4.6e-57, 46.43% id in 351 aa; [citrate (pro-3S)-lyase] ligase complement(2904019..2905083) Pectobacterium atrosepticum SCRI1043 2884972 YP_050666.1 CDS ECA2575 NC_004547.2 2905173 2906057 R Similar to Burkholderia cepacia DntG SWALL:Q8VUC7 (EMBL:AF169302) (281 aa) fasta scores: E(): 8.5e-37, 43.61% id in 282 aa, and to Salmonella typhimurium fumarylacetoacetate stm0331 SWALL:Q8ZRI8 (EMBL:AE008710) (292 aa) fasta scores: E(): 1.7e-68, 62.45% id in 285 aa; fumarylacetoacetate hydrolase complement(2905173..2906057) Pectobacterium atrosepticum SCRI1043 2885230 YP_050667.1 CDS citW NC_004547.2 2906175 2907545 R Similar to Klebsiella pneumoniae citrate/acetate antiporter CitW SWALL:Q8VS41 (EMBL:AF411142) (454 aa) fasta scores: E(): 1.9e-136, 76.75% id in 456 aa; citrate/acetate antiporter complement(2906175..2907545) Pectobacterium atrosepticum SCRI1043 2884966 YP_050668.1 CDS citA NC_004547.2 2907965 2909560 D Similar to Klebsiella pneumoniae sensor kinase CitA SWALL:CITA_KLEPN (SWALL:P52687) (547 aa) fasta scores: E(): 4.7e-85, 44.8% id in 529 aa; two-component sensor kinase 2907965..2909560 Pectobacterium atrosepticum SCRI1043 2884970 YP_050669.1 CDS citB NC_004547.2 2909647 2910348 D Similar to Klebsiella pneumoniae transcriptional regulatory protein CitB SWALL:CITB_KLEPN (SWALL:P52688) (234 aa) fasta scores: E(): 7.4e-29, 41.59% id in 226 aa; two-component response regulator 2909647..2910348 Pectobacterium atrosepticum SCRI1043 2884971 YP_050670.1 CDS ECA2579 NC_004547.2 2910808 2912742 D Similar to Salmonella typhimurium methyl-accepting chemotaxis citrate transducer Tcp or stm3577 SWALL:MCPC_SALTY (SWALL:Q02755) (547 aa) fasta scores: E(): 2.9e-54, 41.59% id in 553 aa, and to Yersinia pestis methyl-accepting chemotaxis protein II Tar or ypo4062 or tsr or y4081 SWALL:AAM87624 (EMBL:AJ414160) (649 aa) fasta scores: E(): 2.1e-72, 43.39% id in 643 aa; methyl-accepting chemotaxis citrate transducer 2910808..2912742 Pectobacterium atrosepticum SCRI1043 2885231 YP_050671.1 CDS ECA2580 NC_004547.2 2913047 2914987 D Similar to Salmonella typhimurium methyl-accepting chemotaxis citrate transducer Tcp or stm3577 SWALL:MCPC_SALTY (SWALL:Q02755) (547 aa) fasta scores: E(): 3.7e-57, 47.48% id in 438 aa, and to Yersinia pestis methyl-accepting chemotaxis protein II tar or ypo4062 or tsr or y4081 SWALL:AAM87624 (EMBL:AJ414160) (649 aa) fasta scores: E(): 1.1e-70, 41.68% id in 643 aa; methyl-accepting chemotaxis citrate transducer 2913047..2914987 Pectobacterium atrosepticum SCRI1043 2885137 YP_050672.1 CDS ECA2581 NC_004547.2 2915069 2915911 R Similar to Yersinia pestis exported protein ypo1551 or y2617 SWALL:Q8ZFX2 (EMBL:AJ414149) (275 aa) fasta scores: E(): 4.4e-71, 65.81% id in 275 aa, and to Shigella flexneri enzyme of sugar metabolism yeez or sf2075 SWALL:AAN43615 (EMBL:AE015223) (274 aa) fasta scores: E(): 2.7e-69, 64.23% id in 274 aa; hypothetical protein complement(2915069..2915911) Pectobacterium atrosepticum SCRI1043 2885138 YP_050673.1 CDS hisG NC_004547.2 2916384 2917283 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2916384..2917283 Pectobacterium atrosepticum SCRI1043 2882633 YP_050674.1 CDS hisD NC_004547.2 2917289 2918617 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2917289..2918617 Pectobacterium atrosepticum SCRI1043 2882559 YP_050675.1 CDS hisC NC_004547.2 2918614 2919687 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2918614..2919687 Pectobacterium atrosepticum SCRI1043 2882558 YP_050676.1 CDS hisB NC_004547.2 2919703 2920770 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2919703..2920770 Pectobacterium atrosepticum SCRI1043 2882544 YP_050677.1 CDS hisH NC_004547.2 2920770 2921360 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2920770..2921360 Pectobacterium atrosepticum SCRI1043 2882634 YP_050678.1 CDS hisA NC_004547.2 2921367 2922104 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2921367..2922104 Pectobacterium atrosepticum SCRI1043 2882543 YP_050679.1 CDS hisF NC_004547.2 2922086 2922862 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2922086..2922862 Pectobacterium atrosepticum SCRI1043 2882560 YP_050680.1 CDS hisI NC_004547.2 2922856 2923488 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2922856..2923488 Pectobacterium atrosepticum SCRI1043 2882635 YP_050681.1 CDS ihfB NC_004547.2 2923649 2923933 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(2923649..2923933) Pectobacterium atrosepticum SCRI1043 2882330 YP_050682.1 CDS rpsA NC_004547.2 2924025 2925698 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2924025..2925698) Pectobacterium atrosepticum SCRI1043 2884477 YP_050683.1 CDS cmk NC_004547.2 2925815 2926492 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(2925815..2926492) Pectobacterium atrosepticum SCRI1043 2884956 YP_050684.1 CDS aroA NC_004547.2 2926713 2928002 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2926713..2928002) Pectobacterium atrosepticum SCRI1043 2884136 YP_050685.1 CDS serC NC_004547.2 2928085 2929170 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(2928085..2929170) Pectobacterium atrosepticum SCRI1043 2884404 YP_050686.1 CDS ECA2595 NC_004547.2 2929563 2931326 D Similar to Yersinia pestis hypothetical protein Ypo1385 SWALL:Q8ZGB8 (EMBL:AJ414148) (588 aa) fasta scores: E(): 5.2e-206, 84.24% id in 584 aa, and to Escherichia coli hypothetical protein ycao or b0905 SWALL:YCAO_ECOLI (SWALL:P75838) (586 aa) fasta scores: E(): 1.9e-200, 81.84% id in 584 aa; hypothetical protein 2929563..2931326 Pectobacterium atrosepticum SCRI1043 2885139 YP_050687.1 CDS focA NC_004547.2 2931779 2932639 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 probable formate transporter 1 FocA or FocA_2 or b0904 or c1042 or z1250 or ecs0987 SWALL:FOCA_ECOLI (SWALL:P21501) (285 aa) fasta scores: E(): 8.3e-94, 80.7% id in 285 aa; formate transporter 2931779..2932639 Pectobacterium atrosepticum SCRI1043 2885385 YP_050688.1 CDS pflB NC_004547.2 2932697 2934979 D Similar to Escherichia coli formate acetyltransferase 1 PflB or Pfl or b0903 SWALL:PFLB_ECOLI (SWALL:P09373) (759 aa) fasta scores: E(): 0, 91.3% id in 759 aa; formate acetyltransferase 2932697..2934979 Pectobacterium atrosepticum SCRI1043 2885796 YP_050689.1 CDS ECA2598 NC_004547.2 2935461 2935850 D Similar to Salmonella typhi hypothetical protein Sty4599 SWALL:Q8Z1G8 (EMBL:AL627283) (125 aa) fasta scores: E(): 0.32, 26.08% id in 115 aa; hypothetical protein 2935461..2935850 Pectobacterium atrosepticum SCRI1043 2885779 YP_050690.1 CDS ECA2599 NC_004547.2 2935893 2936141 R Similar to Escherichia coli prophage P2 Ogr protein OgrK or b2082 SWALL:OGRK_ECOLI (SWALL:P37057) (72 aa) fasta scores: E(): 2.1e-07, 50.98% id in 51 aa, and to Salmonella typhi bacteriophage gene regulatory protein sty4826 SWALL:Q8Z107 (EMBL:AL627283) (79 aa) fasta scores: E(): 2.2e-08, 48.43% id in 64 aa, and to Bacteriophage 186 late control gene B protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 7.6e-08, 45.76% id in 59 aa. Also similar to ECA0414 (39.726% id. in 55 aa overlap), and to ECA3454 (43.836% id. in 50 aa overlap), and to ECA0833 (39.216% id. in 51 aa overlap).; bacteriophage regulatory protein complement(2935893..2936141) Pectobacterium atrosepticum SCRI1043 2885780 YP_050691.1 CDS ECA2600 NC_004547.2 2936178 2937215 R Similar to Bacteriophage 186 late control gene D protein D SWALL:VPD_BP186 (SWALL:P21679) (389 aa) fasta scores: E(): 1.2e-40, 52.23% id in 358 aa, and to Salmonella typhi regulator of late gene expression sty3702 or sty2882 SWALL:Q8XG84 (EMBL:AL627279) (366 aa) fasta scores: E(): 2.1e-66, 53.48% id in 344 aa; bacteriophage late gene control protein D complement(2936178..2937215) Pectobacterium atrosepticum SCRI1043 2885781 YP_050692.1 CDS ECA2601 NC_004547.2 2937468 2938652 D Similar to Bacteriophage P2 major tail sheath protein FI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 3.9e-74, 50% id in 392 aa, and to Escherichia coli O157:H7 tail sheath protein of prophage cp-933t z2991 or ecs2645 SWALL:Q8XBE2 (EMBL:AE005413) (394 aa) fasta scores: E(): 1.2e-109, 69.19% id in 396 aa; major tail sheath protein FI 2937468..2938652 Pectobacterium atrosepticum SCRI1043 2885782 YP_050693.1 CDS ECA2602 NC_004547.2 2938653 2939168 D Similar to Bacteriophage P2 major tail tube protein FII SWALL:VPF2_BPP2 (SWALL:P22502) (171 aa) fasta scores: E(): 8e-20, 41.52% id in 171 aa, and to Escherichia coli O157:H7 tail fiber component of prophage cp-933t z2990 or ecs2644 SWALL:Q8XBE3 (EMBL:AE005413) (170 aa) fasta scores: E(): 7.5e-42, 65.88% id in 170 aa; major tail tube protein FII 2938653..2939168 Pectobacterium atrosepticum SCRI1043 2884709 YP_050694.1 CDS ECA2603 NC_004547.2 2939282 2939590 D Similar to Bacteriophage P2 Gpe SWALL:O64313 (EMBL:AF063097) (91 aa) fasta scores: E(): 1.8e-05, 40% id in 85 aa, and to Salmonella typhi phage tail protein sty3698 or sty2886 SWALL:Q8XFW3 (EMBL:AL627279) (100 aa) fasta scores: E(): 2e-06, 40.74% id in 81 aa; phage tail protein E 2939282..2939590 Pectobacterium atrosepticum SCRI1043 2884710 YP_050695.1 CDS ECA2604 NC_004547.2 2939611 2939751 D Similar to Bacteriophage P2 gpE' SWALL:O64312 (EMBL:AF063097) (142 aa) fasta scores: E(): 2.4e-08, 58.14% id in 43 aa and Bacteriophage 186 orf52 H SWALL:O80316 (EMBL:U32222) (58 aa) fasta scores: E(): 1.1e-08, 59.52% id in 42 aa; phage tail protein E' 2939611..2939751 Pectobacterium atrosepticum SCRI1043 2884711 YP_050696.1 CDS ECA2605 NC_004547.2 2939738 2942668 D Similar to Bacteriophage P2 gpt T SWALL:O64314 (EMBL:AF063097) (815 aa) fasta scores: E(): 1.1e-43, 31.97% id in 807 aa and Bacteriophage phi CTX orf25 SWALL:Q9ZXK0 (EMBL:AB008550) (904 aa) fasta scores: E(): 1.7e-45, 30.66% id in 923 aa; bacteriophage tail fiber protein T (tape measure) 2939738..2942668 Pectobacterium atrosepticum SCRI1043 2884712 YP_050697.1 CDS ECA2606 NC_004547.2 2942681 2943172 D Similar to Bacteriophage P2 gpu U SWALL:O64315 (EMBL:AF063097) (159 aa) fasta scores: E(): 4.5e-20, 48.8% id in 125 aa. Also similar to Bacteriophage 186 F protein F SWALL:O80317 (EMBL:U32222) (161 aa) fasta scores: E(): 2.4e-22, 44.78% id in 163 aa; bacteriophage tail fiber protein U 2942681..2943172 Pectobacterium atrosepticum SCRI1043 2884664 YP_050698.1 CDS ECA2607 NC_004547.2 2943293 2943910 R Similar to Bacteriophage P2 probable tail fiber assembly protein G SWALL:TFA_BPP2 (SWALL:P26699) (175 aa) fasta scores: E(): 0.00029, 34.01% id in 147 aa, and to Bacteriophage lambda tail fiber assembly protein tfA SWALL:TFA_LAMBD (SWALL:P03740) (194 aa) fasta scores: E(): 1.3e-18, 36.11% id in 180 aa; bacteriophage tail fiber assembly protein G complement(2943293..2943910) Pectobacterium atrosepticum SCRI1043 2884665 YP_050699.1 CDS ECA2608 NC_004547.2 2943910 2945520 R Similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 9.6e-27, 37.55% id in 442 aa and Bacteriophage GMSE-1 probable tail fiber protein SWALL:Q9B027 (EMBL:AF311651) (497 aa) fasta scores: E(): 4.1e-49, 56.43% id in 264 aa; bacteriophage variable tail fiber protein H complement(2943910..2945520) Pectobacterium atrosepticum SCRI1043 2884777 YP_050700.1 CDS ECA2609 NC_004547.2 2945517 2946122 R Similar to Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 1.8e-40, 57.14% id in 175 aa, and to Escherichia coli O6 phage tail protein c0966 SWALL:AAN79439 (EMBL:AE016758) (201 aa) fasta scores: E(): 6e-49, 57.28% id in 199 aa; phage tail protein I complement(2945517..2946122) Pectobacterium atrosepticum SCRI1043 2884778 YP_050701.1 CDS ECA2610 NC_004547.2 2946115 2947011 R Similar to Bacteriophage P2 baseplate assembly protein GpJ SWALL:VPJ_BPP2 (SWALL:P51767) (302 aa) fasta scores: E(): 1.8e-56, 54.48% id in 301 aa and to Bacteriophage 186 GpL SWALL:Q37840 (EMBL:U32222) (302 aa) fasta scores: E(): 3.2e-57, 54.81% id in 301 aa; phage baseplate assembly protein J complement(2946115..2947011) Pectobacterium atrosepticum SCRI1043 2884779 YP_050702.1 CDS ECA2611 NC_004547.2 2946998 2947366 R Similar to Bacteriophage P2 baseplate assembly protein W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 2.5e-15, 46.72% id in 107 aa, and to Salmonella typhi phage baseplate assembly protein sty3688 SWALL:Q8Z345 (EMBL:AL627279) (119 aa) fasta scores: E(): 4.7e-16, 45.29% id in 117 aa; phage baseplate assembly protein W complement(2946998..2947366) Pectobacterium atrosepticum SCRI1043 2884780 YP_050703.1 CDS ECA2612 NC_004547.2 2947363 2947944 R Similar to Bacteriophage P2 baseplate assembly protein V SWALL:VPV_BPP2 (SWALL:P31340) (211 aa) fasta scores: E(): 5.6e-19, 42.64% id in 204 aa, and to Salmonella typhi phage baseplate assembly protein sty3687 SWALL:Q8Z346 (EMBL:AL627279) (192 aa) fasta scores: E(): 7e-20, 37.89% id in 190 aa; baseplate assembly protein V complement(2947363..2947944) Pectobacterium atrosepticum SCRI1043 2884813 YP_050704.1 CDS ECA2613 NC_004547.2 2947941 2948579 R Similar to Bacteriophage P2 tail completion protein s S SWALL:VPS_BPP2 (SWALL:P36934) (150 aa) fasta scores: E(): 0.017, 24.02% id in 204 aa and to Bacteriophage phi CTX orf14 SWALL:Q9ZXL2 (EMBL:AB008550) (156 aa) fasta scores: E(): 1.7e-07, 32.02% id in 203 aa; phage tail protein S complement(2947941..2948579) Pectobacterium atrosepticum SCRI1043 2884814 YP_050705.1 CDS ECA2614 NC_004547.2 2948572 2949024 R Similar to Bacteriophage P2 tail completion protein R SWALL:VPR_BPP2 (SWALL:P36933) (155 aa) fasta scores: E(): 9.1e-12, 37.31% id in 134 aa, and to Salmonella typhi phage tail protein sty3685 SWALL:Q8Z348 (EMBL:AL627279) (143 aa) fasta scores: E(): 7.3e-12, 38.16% id in 131 aa; phage tail completion protein R complement(2948572..2949024) Pectobacterium atrosepticum SCRI1043 2884815 YP_050706.1 CDS ECA2614A NC_004547.2 2949025 2949321 R Similar to Bacteriophage P2 LysC SWALL:Q8LTD0 (EMBL:AF063097) (96 aa) fasta scores: E(): 8.4e-10, 40.69% id in 86 aa; phage protein complement(2949025..2949321) Pectobacterium atrosepticum SCRI1043 2883010 YP_050707.1 CDS ECA2615 NC_004547.2 2949164 2949604 R Similar to Bacteriophage P2 protein LysB SWALL:LYSB_BPP2 (SWALL:P51770) (141 aa) fasta scores: E(): 0.023, 28.77% id in 139 aa, and to Salmonella typhi regulatory protein sty3684 SWALL:Q8Z349 (EMBL:AL627279) (142 aa) fasta scores: E(): 1.2e-16, 51.16% id in 129 aa; phage encoded host lysis, regulatory protein complement(2949164..2949604) Pectobacterium atrosepticum SCRI1043 2883011 YP_050708.1 CDS ECA2616 NC_004547.2 2949601 2950143 R Similar to Vibrio harveyi bacteriophage VHML Orf19 orf19 SWALL:AAN12317 (EMBL:AY133112) (185 aa) fasta scores: E(): 6.7e-25, 40.44% id in 178 aa, and to Salmonella typhi hypothetical protein Sty1889 SWALL:Q8Z6A5 (EMBL:AL627271) (180 aa) fasta scores: E(): 1e-48, 64.44% id in 180 aa; hypothetical protein complement(2949601..2950143) Pectobacterium atrosepticum SCRI1043 2883012 YP_050709.1 CDS ECA2617 NC_004547.2 2950159 2950467 R Similar to Bacteriophage P2 holin Y SWALL:HOLI_BPP2 (SWALL:P51773) (93 aa) fasta scores: E(): 3.2e-23, 78.02% id in 91 aa, and to Bacteriophage 186 orf24 SWALL:O80308 (EMBL:U32222) (98 aa) fasta scores: E(): 1.3e-23, 72.16% id in 97 aa; phage lysis protein Y, holin complement(2950159..2950467) Pectobacterium atrosepticum SCRI1043 2884076 YP_050710.1 CDS ECA2618 NC_004547.2 2950470 2950670 R Similar to Bacteriophage P2 tail protein Gpx SWALL:VPX_BPP2 (SWALL:P51772) (67 aa) fasta scores: E(): 2.8e-10, 54.54% id in 66 aa and Bacteriophage 186 orf23 SWALL:O80307 (EMBL:U32222) (67 aa) fasta scores: E(): 2.4e-10, 50% id in 66 aa; phage tail protein X complement(2950470..2950670) Pectobacterium atrosepticum SCRI1043 2884077 YP_050711.1 CDS ECA2619 NC_004547.2 2950670 2951167 R Similar to Bacteriophage P2 head completion/stabilization protein L SWALL:VPL_BPP2 (SWALL:P25475) (169 aa) fasta scores: E(): 1.8e-13, 31.28% id in 163 aa and Bacteriophage 186 Q protein Q SWALL:O80306 (EMBL:U32222) (168 aa) fasta scores: E(): 9.4e-14, 33.33% id in 144 aa; head completion/stabilization protein L complement(2950670..2951167) Pectobacterium atrosepticum SCRI1043 2884078 YP_050712.1 CDS ECA2620 NC_004547.2 2951270 2952163 R Similar to Bacteriophage P2 terminase, endonuclease subunit M SWALL:VPM_BPP2 (SWALL:P25476) (247 aa) fasta scores: E(): 5.6e-20, 36.36% id in 220 aa and Bacteriophage 299 small terminase subunit M SWALL:Q94MK1 (EMBL:AJ298566) (247 aa) fasta scores: E(): 4.3e-20, 36.36% id in 220 aa; phage terminase, endonuclease small subunit M complement(2951270..2952163) Pectobacterium atrosepticum SCRI1043 2884065 YP_050713.1 CDS ECA2621 NC_004547.2 2952215 2953264 R Similar to Bacteriophage P2 major capsid protein precursor N SWALL:VPN_BPP2 (SWALL:P25477) (357 aa) fasta scores: E(): 6.7e-48, 40.69% id in 344 aa; major phage capsid protein N complement(2952215..2953264) Pectobacterium atrosepticum SCRI1043 2884066 YP_050714.1 CDS ECA2622 NC_004547.2 2953289 2954122 R Similar to Bacteriophage P2 presumed capsid scaffolding protein O SWALL:VPO_BPP2 (SWALL:P25478) (284 aa) fasta scores: E(): 7.4e-21, 34.16% id in 281 aa; capsid scaffolding protein O complement(2953289..2954122) Pectobacterium atrosepticum SCRI1043 2884067 YP_050715.1 CDS ECA2623 NC_004547.2 2954281 2956002 D Similar to Bacteriophage P2 terminase, ATPase subunit P SWALL:VPP_BPP2 (SWALL:P25479) (590 aa) fasta scores: E(): 8e-79, 45.26% id in 581 aa, and to Bacteriophage phi CTX pseudomonas aeruginosa phage phi ctx SWALL:Q9ZXM5 (EMBL:AB008550) (594 aa) fasta scores: E(): 1.7e-79, 45.81% id in 585 aa; phage terminase, ATPase P 2954281..2956002 Pectobacterium atrosepticum SCRI1043 2884068 YP_050716.1 CDS ECA2624 NC_004547.2 2956004 2957050 D Similar to Bacteriophage P2 presumed portal vertex protein Q SWALL:VPQ_BPP2 (SWALL:P25480) (344 aa) fasta scores: E(): 3.8e-60, 44.89% id in 343 aa and Bacteriophage 186 capsid portal protein W SWALL:Q37851 (EMBL:U32222) (340 aa) fasta scores: E(): 1e-61, 46.11% id in 347 aa; phage capsid portal protein Q 2956004..2957050 Pectobacterium atrosepticum SCRI1043 2884057 YP_050717.1 CDS ECA2625 NC_004547.2 2957426 2958115 R Similar to Bacteriophage PSA methylase Met SWALL:Q8W5X3 (EMBL:AJ312240) (270 aa) fasta scores: E(): 1.3e-07, 35.08% id in 114 aa, and to uncultured bacterium Upf31.0 protein upf31.0 SWALL:Q8RSH9 (EMBL:AJ431260) (224 aa) fasta scores: E(): 2e-22, 45.88% id in 231 aa; phage DNA methylase complement(2957426..2958115) Pectobacterium atrosepticum SCRI1043 2884058 YP_050718.1 CDS ECA2626 NC_004547.2 2958118 2958444 R Similar to the N-terminal regions of many including Heliobacillus mobilis ATP-dependent clp protease ATP-binding subunit clpx SWALL:AAN87458 (EMBL:AY142854) (420 aa) fasta scores: E(): 0.2, 46.15% id in 39 aa, and to Brucella abortus ClpX SWALL:Q9L7X5 (EMBL:AF218420) (423 aa) fasta scores: E(): 0.28, 42% id in 50 aa; phage-like protein complement(2958118..2958444) Pectobacterium atrosepticum SCRI1043 2884059 YP_050719.1 CDS ECA2627 NC_004547.2 2958537 2961047 R Similar to Bacteriophage P2 replication gene A protein A SWALL:VPA_BPP2 (SWALL:Q06419) (761 aa) fasta scores: E(): 4e-50, 32.96% id in 731 aa, and to Escherichia coli O6 replication protein for prophage c0942 SWALL:AAN79415 (EMBL:AE016758) (804 aa) fasta scores: E(): 2.1e-91, 37.13% id in 797 aa; phage replication protein A complement(2958537..2961047) Pectobacterium atrosepticum SCRI1043 2884060 YP_050720.1 CDS ECA2628 NC_004547.2 2961047 2962075 R Similar to Bacteriophage 186 hypothetical gp84 SWALL:CP84_BP186 (SWALL:P41062) (334 aa) fasta scores: E(): 1.7e-98, 69.69% id in 330 aa; phage protein complement(2961047..2962075) Pectobacterium atrosepticum SCRI1043 2884043 YP_050721.1 CDS ECA2629 NC_004547.2 2962068 2962916 R Similar to Escherichia coli, and Escherichia coli O157:H7 DNA adenine methylase Dam or b3387 or z4740 or ecs4229 SWALL:DMA_ECOLI (SWALL:P00475) (278 aa) fasta scores: E(): 1e-47, 47.68% id in 281 aa; phage DNA adenine methylase complement(2962068..2962916) Pectobacterium atrosepticum SCRI1043 2884044 YP_050722.1 CDS ECA2630 NC_004547.2 2962913 2963812 R Similar to Salmonella typhimurium phage ST64B Sb30 SWALL:AAL25908 (EMBL:AY055382) (189 aa) fasta scores: E(): 1e-30, 50% id in 186 aa, and in parts to many other Bacteriophage exodeoxyribonuclease. e.g. Bacteriophage T4 DexA SWALL:EXOD_BPT4 (SWALL:P04536) (227 aa) fasta scores: E(): 0.00055, 26.19% id in 210 aa and to the C-terminal region of Escherichia coli O157:H7 exonuclease VIII, ds DNA exonuclease, 5'--> 3' specific encoded by prophage CP-933o exoo or z2037 or ecs1759 SWALL:Q8X287 (EMBL:AE005343) (823 aa) fasta scores: E(): 1.2e-27, 44.44% id in 189 aa; hypothetical protein complement(2962913..2963812) Pectobacterium atrosepticum SCRI1043 2883859 YP_050723.1 CDS ECA2631 NC_004547.2 2963809 2964042 R Similar to Bacteriophage 186 hypothetical gp79 SWALL:CP79_BP186 (SWALL:P21682) (77 aa) fasta scores: E(): 0.00013, 40.62% id in 64 aa, and to Salmonella typhimurium fels-2 prophage: similar to protein in phage 186 stm2732 SWALL:Q8ZMS1 (EMBL:AE008824) (77 aa) fasta scores: E(): 0.0014, 35.52% id in 76 aa; hypothetical protein complement(2963809..2964042) Pectobacterium atrosepticum SCRI1043 2883860 YP_050724.1 CDS ECA2632 NC_004547.2 2964113 2964448 R Similar to Salmonella typhimurium fels-2 prophage: similar to e. coli retron ec67 stm2733 SWALL:Q8ZMS0 (EMBL:AE008824) (113 aa) fasta scores: E(): 4e-17, 54.05% id in 111 aa, and to Salmonella typhi hypothetical protein Sty3664 SWALL:Q8Z369 (EMBL:AL627279) (113 aa) fasta scores: E(): 6.4e-17, 54.05% id in 111 aa; hypothetical protein complement(2964113..2964448) Pectobacterium atrosepticum SCRI1043 2883861 YP_050725.1 CDS ECA2633 NC_004547.2 2964529 2964654 R Similar to Bacteriophage 186 host filamentation protein Fil SWALL:VFIL_BP186 (SWALL:P15236) (75 aa) fasta scores: E(): 5.7, 34.28% id in 35 aa, and to Salmonella typhimurium hypothetical protein Stm2735 stm2735 SWALL:Q8ZMR8 (EMBL:AE008824) (77 aa) fasta scores: E(): 1.7, 40% id in 30 aa; hypothetical protein complement(2964529..2964654) Pectobacterium atrosepticum SCRI1043 2883862 YP_050726.1 CDS ECA2634 NC_004547.2 2964651 2964851 R no significant database matches; hypothetical protein complement(2964651..2964851) Pectobacterium atrosepticum SCRI1043 2883802 YP_050727.1 CDS ECA2635 NC_004547.2 2964848 2965210 R Similar to Bacteriophage P2 regulatory protein Cox SWALL:VCOX_BPP2 (SWALL:P07695) (91 aa) fasta scores: E(): 0.0011, 33.33% id in 81 aa, and to Bacteriophage P2 Cox protein Cox SWALL:Q94MG1 (EMBL:AJ306907) (91 aa) fasta scores: E(): 0.0034, 32.09% id in 81 aa; phage regulatory protein complement(2964848..2965210) Pectobacterium atrosepticum SCRI1043 2883803 YP_050728.1 CDS ECA2636 NC_004547.2 2965319 2965618 D Similar to Bacteriophage P2 repressor protein C SWALL:RPC_BPP2 (SWALL:P04132) (99 aa) fasta scores: E(): 3.7e-15, 48.48% id in 99 aa; phage repressor protein C 2965319..2965618 Pectobacterium atrosepticum SCRI1043 2883804 YP_050729.1 CDS ECA2637 NC_004547.2 2965685 2966671 D Similar to Bacteriophage P2 integrase Int SWALL:VINT_BPP2 (SWALL:P36932) (337 aa) fasta scores: E(): 1.2e-68, 54.29% id in 326 aa; phage integrase 2965685..2966671 Pectobacterium atrosepticum SCRI1043 2883687 YP_050730.1 CDS ECA2639 NC_004547.2 2967603 2969171 R Similar to Bacillus halodurans hydantoinase bh1884 SWALL:Q9KBP1 (EMBL:AP001513) (533 aa) fasta scores: E(): 2.5e-93, 50.09% id in 519 aa, and to Enterococcus faecalis hydantoinase/oxoprolinase ef3275 SWALL:AAO82942 (EMBL:AE016957) (517 aa) fasta scores: E(): 7.4e-90, 48.55% id in 519 aa; hydantoinase complement(2967603..2969171) Pectobacterium atrosepticum SCRI1043 2883688 YP_050731.1 CDS ECA2640 NC_004547.2 2969182 2970291 R Similar to Bacillus halodurans hypothetical protein Bh1883 SWALL:Q9KBP2 (EMBL:AP001513) (365 aa) fasta scores: E(): 7.6e-68, 49.45% id in 364 aa, and to Listeria innocua hypothetical protein Lin0474 SWALL:Q92EI5 (EMBL:AL596165) (366 aa) fasta scores: E(): 2e-64, 46.32% id in 367 aa; hypothetical protein complement(2969182..2970291) Pectobacterium atrosepticum SCRI1043 2883689 YP_050732.1 CDS ECA2641 NC_004547.2 2970344 2971648 R Similar to Escherichia coli, and Escherichia coli O6 cytosine permease CodB or b0336 or c0455 SWALL:CODB_ECOLI (SWALL:P25525) (419 aa) fasta scores: E(): 2.4e-20, 28% id in 350 aa, and to Bacillus halodurans cytosine permease bh1882 SWALL:Q9KBP3 (EMBL:AP001513) (445 aa) fasta scores: E(): 1.4e-50, 36.59% id in 429 aa; permease complement(2970344..2971648) Pectobacterium atrosepticum SCRI1043 2883506 YP_050733.1 CDS ECA2642 NC_004547.2 2971922 2972863 D Similar to Pseudomonas putida transcriptional regulator, LysR family pp4522 SWALL:AAN70096 (EMBL:AE016791) (297 aa) fasta scores: E(): 5.6e-24, 29.64% id in 280 aa, and to Rhizobium loti transcriptional regulator mlr6990 SWALL:Q987M7 (EMBL:AP003010) (299 aa) fasta scores: E(): 4.7e-18, 30.45% id in 266 aa; LysR family transcriptional regulator 2971922..2972863 Pectobacterium atrosepticum SCRI1043 2883507 YP_050734.1 CDS ECA2643 NC_004547.2 2972849 2974003 R Similar to Yersinia pestis membrane protein ypo1380 SWALL:Q8ZGC3 (EMBL:AJ414148) (382 aa) fasta scores: E(): 1.3e-102, 70.23% id in 383 aa, and to Salmonella typhimurium mfs family transport protein ycad or stm0968 SWALL:Q8ZQD2 (EMBL:AE008741) (382 aa) fasta scores: E(): 1e-95, 64.92% id in 382 aa; MFS family transporter protein complement(2972849..2974003) Pectobacterium atrosepticum SCRI1043 2883508 YP_050735.1 CDS serS NC_004547.2 2974318 2975613 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2974318..2975613) Pectobacterium atrosepticum SCRI1043 2884399 YP_050736.1 CDS ECA2645 NC_004547.2 2975717 2977060 R Similar to Yersinia pestis ATPase protein ypo1378 or y2797 SWALL:Q8ZGC5 (EMBL:AJ414148) (447 aa) fasta scores: E(): 4.1e-143, 89.48% id in 447 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ycaj or b0892 or c1029 or z1238 or ecs0977 SWALL:YCAJ_ECOLI (SWALL:P45526) (447 aa) fasta scores: E(): 3.4e-139, 87.47% id in 447 aa; recombination factor protein RarA complement(2975717..2977060) Pectobacterium atrosepticum SCRI1043 2883449 YP_050737.1 CDS lolA NC_004547.2 2977068 2977679 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(2977068..2977679) Pectobacterium atrosepticum SCRI1043 2883041 YP_050738.1 CDS ftsK NC_004547.2 2977892 2981302 R Similar to Escherichia coli cell division protein FtsK or b0890 SWALL:FTSK_ECOLI (SWALL:P46889) (1329 aa) fasta scores: E(): 3.8e-163, 53.6% id in 1347 aa; cell division protein complement(2977892..2981302) Pectobacterium atrosepticum SCRI1043 2883713 YP_050739.1 CDS lrp NC_004547.2 2981417 2981911 R mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator complement(2981417..2981911) Pectobacterium atrosepticum SCRI1043 2882688 YP_050740.1 CDS ECA2649 NC_004547.2 2982496 2983455 D thioredoxin reductase 2982496..2983455 Pectobacterium atrosepticum SCRI1043 2883450 YP_050741.1 CDS cydD NC_004547.2 2983684 2985450 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane protein/ATP-binding protein 2983684..2985450 Pectobacterium atrosepticum SCRI1043 2883042 YP_050742.2 CDS cydC NC_004547.2 2985468 2987189 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane protein/ATP-binding protein 2985468..2987189 Pectobacterium atrosepticum SCRI1043 2883052 YP_050743.1 CDS aat NC_004547.2 2987214 2987927 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2987214..2987927 Pectobacterium atrosepticum SCRI1043 2885272 YP_050744.1 CDS infA NC_004547.2 2988043 2988261 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2988043..2988261 Pectobacterium atrosepticum SCRI1043 2881757 YP_050745.1 CDS ECA2654 NC_004547.2 2988414 2989868 D Similar to Rhizobium meliloti probable rhizopine catabolism regulatory protein MocR SWALL:MOCR_RHIME (SWALL:P49309) (493 aa) fasta scores: E(): 3.2e-48, 36.95% id in 433 aa, and to Escherichia coli O157:H7 z3973 protein z3973 or ecs3534 SWALL:Q8X922 (EMBL:AE005496) (444 aa) fasta scores: E(): 2.4e-54, 43.8% id in 452 aa; GntR family transcriptional regulator 2988414..2989868 Pectobacterium atrosepticum SCRI1043 2883451 YP_050746.1 CDS ECA2655 NC_004547.2 2989860 2990339 R Similar to Rhizobium loti hypothetical protein Mll1641 SWALL:Q98K47 (EMBL:AP002997) (152 aa) fasta scores: E(): 5.2e-25, 46.66% id in 150 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0269 SWALL:Q9I6M1 (EMBL:AE004465) (145 aa) fasta scores: E(): 4.4e-22, 42.36% id in 144 aa; hypothetical protein complement(2989860..2990339) Pectobacterium atrosepticum SCRI1043 2883452 YP_050747.1 CDS clpA NC_004547.2 2990582 2992855 R ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit complement(2990582..2992855) Pectobacterium atrosepticum SCRI1043 2884962 YP_050748.1 CDS clpS NC_004547.2 2992885 2993205 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(2992885..2993205) Pectobacterium atrosepticum SCRI1043 2883408 YP_050749.1 CDS ECA2658 NC_004547.2 2993392 2993589 R hypothetical protein complement(2993392..2993589) Pectobacterium atrosepticum SCRI1043 2883409 YP_050750.1 CDS cspD NC_004547.2 2993630 2993851 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cold shock-like protein CspD or CspH or b0880 or c1017 or z1117 or ecs0966 or sf0840 SWALL:CSPD_ECOLI (SWALL:P24245) (74 aa) fasta scores: E(): 9.7e-25, 87.32% id in 71 aa; cold shock-like protein 2993630..2993851 Pectobacterium atrosepticum SCRI1043 2883917 YP_050751.1 CDS ECA2660 NC_004547.2 2993972 2995636 R Similar to Yersinia pestis hypothetical protein Ypo1362 ypo1362 SWALL:Q8ZGD9 (EMBL:AJ414148) (555 aa) fasta scores: E(): 1.1e-152, 66.3% id in 555 aa, and to Escherichia coli hypothetical protein ybjd or b0876 SWALL:YBJD_ECOLI (SWALL:P75828) (552 aa) fasta scores: E(): 1.3e-148, 67.14% id in 554 aa; hypothetical protein complement(2993972..2995636) Pectobacterium atrosepticum SCRI1043 2883410 YP_050752.1 CDS ECA2661 NC_004547.2 2995945 2996844 D Similar to Yersinia pestis membrane protein ypo1361 or y2818 SWALL:Q8ZGE0 (EMBL:AJ414147) (298 aa) fasta scores: E(): 4.1e-83, 74.16% id in 298 aa, and to Salmonella typhimurium inner membrane protein ybje or stm0938 SWALL:Q8ZQE7 (EMBL:AE008740) (299 aa) fasta scores: E(): 4.3e-75, 67.33% id in 300 aa; hypothetical protein 2995945..2996844 Pectobacterium atrosepticum SCRI1043 2883411 YP_050753.1 CDS hcp NC_004547.2 2997034 2998686 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2997034..2998686 Pectobacterium atrosepticum SCRI1043 2883108 YP_050754.1 CDS hcr NC_004547.2 2998826 2999851 D Similar to Escherichia coli NADH oxidoreductase Hcr or b0872 SWALL:HCR_ECOLI (SWALL:P75824) (322 aa) fasta scores: E(): 1.3e-46, 61.14% id in 332 aa; HCP oxidoreductase 2998826..2999851 Pectobacterium atrosepticum SCRI1043 2883109 YP_050755.1 CDS ECA2664 NC_004547.2 2999998 3001434 D Similar to Yersinia pestis membrane protein ypo1356 or y2824 SWALL:Q8ZGE5 (EMBL:AJ414147) (496 aa) fasta scores: E(): 1.8e-130, 66.52% id in 475 aa, and to Escherichia coli hypothetical protein ybjt or b0869 SWALL:YBJT_ECOLI (SWALL:P75822) (476 aa) fasta scores: E(): 1.6e-119, 60.08% id in 471 aa; hypothetical protein 2999998..3001434 Pectobacterium atrosepticum SCRI1043 2883242 YP_050756.1 CDS ECA2665 NC_004547.2 3001431 3002258 R Similar to Escherichia coli probable N-acetylmuramoyl-L-alanine amidase ybjr or b0867 SWALL:YBJR_ECOLI (SWALL:P75820) (276 aa) fasta scores: E(): 2.3e-62, 57.93% id in 271 aa, and to Salmonella typhi N-acetylmuramoyl-L-alanine amidase sty0927 SWALL:Q8Z834 (EMBL:AL627268) (276 aa) fasta scores: E(): 3.6e-60, 56.77% id in 273 aa; N-acetylmuramoyl-L-alanine amidase complement(3001431..3002258) Pectobacterium atrosepticum SCRI1043 2883243 YP_050757.1 CDS ECA2666 NC_004547.2 3002334 3002657 R Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein ybjq or stm0930 or sty0926 SWALL:YBJQ_SALTY (SWALL:Q8XGV2) (107 aa) fasta scores: E(): 7.4e-32, 84.11% id in 107 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ybjq or b0866 or c0999 or z1099 or ecs0952 SWALL:YBJQ_ECOLI (SWALL:P75819) (107 aa) fasta scores: E(): 8.3e-31, 82.24% id in 107 aa; hypothetical protein complement(3002334..3002657) Pectobacterium atrosepticum SCRI1043 2883235 YP_050758.1 CDS artP NC_004547.2 3002815 3003543 D With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 3002815..3003543 Pectobacterium atrosepticum SCRI1043 2884115 YP_050759.1 CDS artI NC_004547.2 3003564 3004295 D Similar to Escherichia coli arginine-binding periplasmic protein 1 precursor ArtI or b0863 SWALL:ARTI_ECOLI (SWALL:P30859) (243 aa) fasta scores: E(): 4e-67, 72.42% id in 243 aa; arginine-binding periplasmic protein 1 3003564..3004295 Pectobacterium atrosepticum SCRI1043 2884118 YP_050760.1 CDS artQ NC_004547.2 3004307 3005023 D with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 3004307..3005023 Pectobacterium atrosepticum SCRI1043 2884110 YP_050761.1 CDS artM NC_004547.2 3005023 3005691 D with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 3005023..3005691 Pectobacterium atrosepticum SCRI1043 2884114 YP_050762.1 CDS artJ NC_004547.2 3005969 3006700 D Similar to Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ or b0860 SWALL:ARTJ_ECOLI (SWALL:P30860) (243 aa) fasta scores: E(): 1.1e-71, 78.6% id in 243 aa; arginine-binding periplasmic protein 2 3005969..3006700 Pectobacterium atrosepticum SCRI1043 2884113 YP_050763.1 CDS rumB NC_004547.2 3007088 3008215 R RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase complement(3007088..3008215) Pectobacterium atrosepticum SCRI1043 2883236 YP_050764.1 CDS ECA2673 NC_004547.2 3008342 3008794 R Similar to Yersinia pestis membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa; hypothetical protein complement(3008342..3008794) Pectobacterium atrosepticum SCRI1043 2883237 YP_050765.1 CDS potI NC_004547.2 3009002 3009847 R Similar to Escherichia coli, and Escherichia coli O6 putrescine transport system permease protein PotI or b0857 or c0990 SWALL:POTI_ECOLI (SWALL:P31136) (281 aa) fasta scores: E(): 2.8e-90, 86.12% id in 281 aa; putrescine ABC transporter membrane protein complement(3009002..3009847) Pectobacterium atrosepticum SCRI1043 2885666 YP_050766.1 CDS potH NC_004547.2 3009844 3010809 R Similar to Escherichia coli putrescine transport system permease protein PotH or b0856 SWALL:POTH_ECOLI (SWALL:P31135) (317 aa) fasta scores: E(): 5.4e-105, 82.13% id in 319 aa; putrescine ABC transporter membrane protein complement(3009844..3010809) Pectobacterium atrosepticum SCRI1043 2885665 YP_050767.1 CDS potG NC_004547.2 3010824 3011957 R part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein complement(3010824..3011957) Pectobacterium atrosepticum SCRI1043 2883078 YP_050768.1 CDS potF NC_004547.2 3012229 3013338 R Similar to Escherichia coli putrescine-binding periplasmic protein precursor PotF or b0854 SWALL:POTF_ECOLI (SWALL:P31133) (370 aa) fasta scores: E(): 2.3e-122, 80.54% id in 370 aa; putrescine ABC transporter periplasmic-binding protein complement(3012229..3013338) Pectobacterium atrosepticum SCRI1043 2883077 YP_050769.1 CDS ECA2678 NC_004547.2 3013707 3014189 R Similar to Yersinia pestis hypothetical protein ypo1330 or y2853 SWALL:Q8ZGG7 (EMBL:AJ414147) (161 aa) fasta scores: E(): 1.3e-47, 77.7% id in 157 aa, and to Salmonella typhimurium cytoplasmic protein ybjn or stm0876 SWALL:Q8ZQK1 (EMBL:AE008736) (158 aa) fasta scores: E(): 4.7e-41, 67.92% id in 159 aa; hypothetical protein complement(3013707..3014189) Pectobacterium atrosepticum SCRI1043 2883238 YP_050770.1 CDS rimK NC_004547.2 3014433 3015344 R responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein complement(3014433..3015344) Pectobacterium atrosepticum SCRI1043 2884736 YP_050771.1 CDS nfsA NC_004547.2 3015361 3016080 R NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A complement(3015361..3016080) Pectobacterium atrosepticum SCRI1043 2882807 YP_050772.1 CDS grxA NC_004547.2 3016496 3016762 D functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 3016496..3016762 Pectobacterium atrosepticum SCRI1043 2884046 YP_050773.1 CDS ECA2682 NC_004547.2 3016833 3017204 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ybjm or b0848 or z1075 or ecs0928 or sf0801 SWALL:AAN42434 (EMBL:AE000187) (125 aa) fasta scores: E(): 1.3e-18, 47.15% id in 123 aa, and to Salmonella typhimurium inner membrane protein ybjm or stm0871 SWALL:Q8ZQK3 (EMBL:AE008736) (125 aa) fasta scores: E(): 7.2e-18, 46.4% id in 125 aa; hypothetical protein complement(3016833..3017204) Pectobacterium atrosepticum SCRI1043 2883169 YP_050774.1 CDS ECA2683 NC_004547.2 3017580 3019268 D Similar to Yersinia pestis hypothetical membrane protein ypo1326 or y2857 SWALL:YD26_YERPE (SWALL:Q8ZGH1) (562 aa) fasta scores: E(): 6e-189, 89.14% id in 562 aa, and to Salmonella typhimurium hypothetical membrane protein ybjl or stm0870 SWALL:YBJL_SALTY (SWALL:Q8ZQK4) (561 aa) fasta scores: E(): 9.2e-188, 88.92% id in 560 aa; hypothetical protein 3017580..3019268 Pectobacterium atrosepticum SCRI1043 2883170 YP_050775.1 CDS ECA2684 NC_004547.2 3019705 3020373 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 3019705..3020373 Pectobacterium atrosepticum SCRI1043 2883171 YP_050776.1 CDS deoR NC_004547.2 3020405 3021178 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 deoxyribose operon repressor DeoR or NucR or b0840 or c0925 or z1067 or ecs0920 SWALL:DEOR_ECOLI (SWALL:P06217) (252 aa) fasta scores: E(): 6.5e-55, 54.72% id in 254 aa; DNA-binding transcriptional repressor DeoR 3020405..3021178 Pectobacterium atrosepticum SCRI1043 2883629 YP_050777.1 CDS dacC NC_004547.2 3021175 3022380 R Similar to Escherichia coli penicillin-binding protein 6 precursor DacC or b0839 SWALL:DACC_ECOLI (SWALL:P08506) (400 aa) fasta scores: E(): 3.5e-111, 71.6% id in 398 aa; penicillin-binding protein 6 complement(3021175..3022380) Pectobacterium atrosepticum SCRI1043 2881623 YP_050778.1 CDS ECA2687 NC_004547.2 3022666 3023325 R Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 ABC transporter integral membrane protein sfbc or t2348 SWALL:AAO69940 (EMBL:AE016842) (219 aa) fasta scores: E(): 2.6e-61, 81.65% id in 218 aa, and to Salmonella enteritidis integral membrane protein sfbC SWALL:Q9S4Y9 (EMBL:AF102556) (202 aa) fasta scores: E(): 1.6e-57, 83.08% id in 201 aa; ABC transporter complement(3022666..3023325) Pectobacterium atrosepticum SCRI1043 2883146 YP_050779.1 CDS ECA2688 NC_004547.2 3023318 3024334 R Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 ABC transporter ATP-binding protein sfbb or t2349 SWALL:AAO69941 (EMBL:AE016842) (338 aa) fasta scores: E(): 1.7e-84, 72.48% id in 338 aa, and to Oceanobacillus iheyensis ABC transporter ATP-binding protein ob2100 SWALL:Q8EPK1 (EMBL:AP004600) (341 aa) fasta scores: E(): 3.9e-59, 51.92% id in 337 aa; ABC transporter ATP-binding protein complement(3023318..3024334) Pectobacterium atrosepticum SCRI1043 2883147 YP_050780.1 CDS ECA2689 NC_004547.2 3024416 3025261 R Similar to Salmonella typhi lipoprotein sfba or sty0558 SWALL:Q8Z8R6 (EMBL:AL627267) (276 aa) fasta scores: E(): 2.7e-73, 74.36% id in 277 aa, and to Oceanobacillus iheyensis lipoprotein ob2098 SWALL:BAC14054 (EMBL:AP004600) (274 aa) fasta scores: E(): 9.9e-41, 46.93% id in 277 aa; lipoprotein complement(3024416..3025261) Pectobacterium atrosepticum SCRI1043 2883148 YP_050781.1 CDS ECA2690 NC_004547.2 3025403 3026020 D Similar to Yersinia pestis glutathione S-transferase-family protein ypo1314 SWALL:Q8ZGI3 (EMBL:AJ414147) (206 aa) fasta scores: E(): 1.4e-53, 62.62% id in 206 aa, and to Salmonella typhimurium glutathione S-transferase ylij or stm0862 SWALL:Q8ZQL2 (EMBL:AE008736) (208 aa) fasta scores: E(): 1.6e-47, 56.73% id in 208 aa; glutathione S-transferase 3025403..3026020 Pectobacterium atrosepticum SCRI1043 2883123 YP_050782.1 CDS ECA2691 NC_004547.2 3026053 3027219 R Similar to Escherichia coli hypothetical protein ylii precursor ylii or b0837 SWALL:YLII_ECOLI (SWALL:P75804) (371 aa) fasta scores: E(): 4.8e-98, 65.19% id in 362 aa, and to Pseudomonas putida conserved hypothetical protein pp2198 SWALL:AAN67811 (EMBL:AE016782) (381 aa) fasta scores: E(): 2.7e-96, 66.13% id in 375 aa; hypothetical protein complement(3026053..3027219) Pectobacterium atrosepticum SCRI1043 2883124 YP_050783.1 CDS ECA2692 NC_004547.2 3027383 3028801 R Similar to Agrobacterium tumefaciens amine oxidase, flavin-containing atu1977 or agr_c_3599 SWALL:Q8UDY9 (EMBL:AE009150) (457 aa) fasta scores: E(): 3.3e-25, 27.16% id in 438 aa, and to Rhizobium loti hypothetical protein Mll8087 SWALL:Q984A4 (EMBL:AP003013) (448 aa) fasta scores: E(): 4.9e-26, 29.45% id in 421 aa; flavin-containing amine oxidase complement(3027383..3028801) Pectobacterium atrosepticum SCRI1043 2883125 YP_050784.1 CDS ECA2693 NC_004547.2 3028798 3029253 R Similar to Yersinia pestis hypothetical protein Ypo3467 SWALL:Q8ZBE9 (EMBL:AJ414157) (147 aa) fasta scores: E(): 3.7e-20, 39.71% id in 141 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yhbp or stm3270 or sty3453 SWALL:Q8XEW3 (EMBL:AE008850) (147 aa) fasta scores: E(): 4.1e-14, 28.96% id in 145 aa; hypothetical protein complement(3028798..3029253) Pectobacterium atrosepticum SCRI1043 2882999 YP_050785.1 CDS ECA2694 NC_004547.2 3029319 3031103 R Similar to Amycolatopsis mediterranei peptide synthetase BpsD SWALL:Q939Y2 (EMBL:Y16952) (581 aa) fasta scores: E(): 2e-44, 32.34% id in 575 aa, and to Myxococcus xanthus Ta1 SWALL:Q9Z5F4 (EMBL:AJ006977) (2393 aa) fasta scores: E(): 4e-51, 32.97% id in 552 aa; polyketide synthetase complement(3029319..3031103) Pectobacterium atrosepticum SCRI1043 2883000 YP_050786.1 CDS ECA2695 NC_004547.2 3031133 3032050 R Similar to Escherichia coli, and Escherichia coli O6 malonyl CoA-acyl carrier protein transacylase FabD or TfpA or b1092 or c1361 SWALL:FABD_ECOLI (SWALL:P25715) (308 aa) fasta scores: E(): 0.069, 20.96% id in 291 aa, and to Chlorobium tepidum malonyl coa-acyl carrier protein transacylase fabd or ct2115 SWALL:Q8KAP1 (EMBL:AE012960) (305 aa) fasta scores: E(): 0.0019, 22.22% id in 288 aa; malonyl CoA-acyl carrier protein transacylase complement(3031133..3032050) Pectobacterium atrosepticum SCRI1043 2883001 YP_050787.1 CDS ehpG NC_004547.2 3032047 3033456 R Similar to Pantoea agglomerans EhpG SWALL:AAN40896 (EMBL:AF451953) (311 aa) fasta scores: E(): 7.2e-36, 39.41% id in 274 aa, and to Streptomyces griseus Orf3 protein SWALL:Q9ZN74 (EMBL:AB022095) (456 aa) fasta scores: E(): 2.1e-22, 30.9% id in 453 aa; phenazine antibiotic biosynthesis protein complement(3032047..3033456) Pectobacterium atrosepticum SCRI1043 2885344 YP_050788.1 CDS ehpF NC_004547.2 3033456 3034517 R Similar to Pantoea agglomerans EhpF SWALL:AAN40895 (EMBL:AF451953) (366 aa) fasta scores: E(): 3.2e-61, 43.02% id in 344 aa, and to Streptomyces griseus orf2 protein SWALL:Q9ZN75 (EMBL:AB022095) (352 aa) fasta scores: E(): 8e-46, 39.88% id in 351 aa; phenazine antibiotic biosynthesis protein complement(3033456..3034517) Pectobacterium atrosepticum SCRI1043 2885343 YP_050789.1 CDS ehpE NC_004547.2 3034530 3035168 R Similar to Pseudomonas chlororaphis phenazine biosynthesis protein PhzD SWALL:PHZD_PSECL (SWALL:Q51521) (222 aa) fasta scores: E(): 1.1e-29, 38.02% id in 213 aa, and to Pantoea agglomerans EhpE SWALL:AAN40894 (EMBL:AF451953) (208 aa) fasta scores: E(): 1.8e-20, 34.95% id in 206 aa; phenazine antibiotic biosynthesis protein complement(3034530..3035168) Pectobacterium atrosepticum SCRI1043 2885342 YP_050790.1 CDS ehpD NC_004547.2 3035178 3036023 R Similar to Pseudomonas aeruginosa phenazine/pyocyanine biosynthesis protein PhzF SWALL:PHZF_PSEAE (SWALL:O69754) (278 aa) fasta scores: E(): 2.2e-56, 54.96% id in 282 aa, and to Pantoea agglomerans EhpD SWALL:AAN40893 (EMBL:AF451953) (287 aa) fasta scores: E(): 8.8e-40, 46.12% id in 258 aa; phenazine antibiotic biosynthesis protein complement(3035178..3036023) Pectobacterium atrosepticum SCRI1043 2882596 YP_050791.1 CDS ECA2700 NC_004547.2 3036002 3036352 R hypothetical protein complement(3036002..3036352) Pectobacterium atrosepticum SCRI1043 2883002 YP_050792.1 CDS ehpC NC_004547.2 3036349 3038226 R Similar to Pseudomonas aeruginosa PhzE and pa4214 SWALL:O33410 (EMBL:AF005404) (627 aa) fasta scores: E(): 1.2e-105, 45.65% id in 622 aa, and to Pantoea agglomerans EhpC SWALL:AAN40892 (EMBL:AF451953) (634 aa) fasta scores: E(): 6.8e-55, 37.82% id in 624 aa; phenazine antibiotic biosynthesis protein complement(3036349..3038226) Pectobacterium atrosepticum SCRI1043 2882595 YP_050793.1 CDS ehpB NC_004547.2 3038223 3038843 R Similar to Pseudomonas chlororaphis PhzD SWALL:Q9R9G4 (EMBL:AF195615) (207 aa) fasta scores: E(): 4.5e-38, 47.29% id in 203 aa, and to Pantoea agglomerans EhpB SWALL:AAN40891 (EMBL:AF451953) (209 aa) fasta scores: E(): 1.9e-36, 46.73% id in 199 aa; phenazine antibiotic biosynthesis protein complement(3038223..3038843) Pectobacterium atrosepticum SCRI1043 2882594 YP_050794.1 CDS ehpA NC_004547.2 3038923 3039381 R Similar to Pseudomonas aeruginosa PhzB or pa4211 SWALL:O69753 (EMBL:AF005404) (162 aa) fasta scores: E(): 2.4e-41, 64.43% id in 149 aa, and to Pantoea agglomerans EhpA SWALL:AAN40890 (EMBL:AF451953) (158 aa) fasta scores: E(): 8.9e-37, 58.5% id in 147 aa; phenazine antibiotic biosynthesis protein complement(3038923..3039381) Pectobacterium atrosepticum SCRI1043 2881723 YP_050795.1 CDS ECA2704 NC_004547.2 3039428 3040207 R Similar to Streptomyces aureofaciens oxygenase-like protein aur2G SWALL:Q93M01 (EMBL:AY033994) (285 aa) fasta scores: E(): 1.2e-38, 45.56% id in 259 aa, and to Rhizobium loti oxidoreductase of short-chain mlr1595 SWALL:Q98K81 (EMBL:AP002997) (279 aa) fasta scores: E(): 2.9e-44, 49.8% id in 255 aa; short chain dehydrogenase complement(3039428..3040207) Pectobacterium atrosepticum SCRI1043 2882992 YP_050796.1 CDS ehpR NC_004547.2 3040365 3040751 R Similar to Pantoea agglomerans EhpR SWALL:AAN40889 (EMBL:AF451953) (129 aa) fasta scores: E(): 1.9e-06, 31.96% id in 122 aa, and to Rhizobium loti hypothetical protein Mll3207 SWALL:Q98GR5 (EMBL:AP003001) (131 aa) fasta scores: E(): 1.3e-16, 45.29% id in 117 aa; phenazine antibiotic biosynthesis protein complement(3040365..3040751) Pectobacterium atrosepticum SCRI1043 2885206 YP_050797.1 CDS ECA2706 NC_004547.2 3041393 3041695 D hypothetical protein 3041393..3041695 Pectobacterium atrosepticum SCRI1043 2882993 YP_050798.1 CDS ECA2707 NC_004547.2 3041710 3041943 D hypothetical protein 3041710..3041943 Pectobacterium atrosepticum SCRI1043 2882994 YP_050799.1 CDS rimO NC_004547.2 3042056 3043384 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 3042056..3043384 Pectobacterium atrosepticum SCRI1043 2882995 YP_050800.1 CDS sanA NC_004547.2 3043567 3044349 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sana protein SanA or b2144 or c2677 or z3399 or ecs3036 or sf2229 SWALL:SANA_ECOLI (SWALL:P33017) (239 aa) fasta scores: E(): 4.2e-73, 80.75% id in 239 aa; hypothetical protein 3043567..3044349 Pectobacterium atrosepticum SCRI1043 2884438 YP_050801.1 CDS ECA2710 NC_004547.2 3044359 3045534 R Similar to Yersinia pestis exported protein ypo1506 SWALL:Q8ZG14 (EMBL:AJ414148) (388 aa) fasta scores: E(): 3.3e-95, 61.62% id in 370 aa, and to Escherichia coli hypothetical protein yeib or b2152 SWALL:YEIB_ECOLI (SWALL:P25747) (385 aa) fasta scores: E(): 5.9e-88, 59.45% id in 370 aa; hypothetical protein complement(3044359..3045534) Pectobacterium atrosepticum SCRI1043 2882990 YP_050802.1 CDS folE NC_004547.2 3045672 3046334 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(3045672..3046334) Pectobacterium atrosepticum SCRI1043 2885248 YP_050803.1 CDS ECA2712 NC_004547.2 3046666 3048348 R Similar to Salmonella typhimurium methyl-accepting chemotaxis protein stm3152 SWALL:Q8ZM14 (EMBL:AE008845) (547 aa) fasta scores: E(): 2.1e-79, 47.61% id in 565 aa, and to Yersinia pestis methyl-accepting chemotaxis protein CheD or ypo1675 or Tsr or y1837 SWALL:Q8ZFM2 (EMBL:AJ414149) (557 aa) fasta scores: E(): 1.5e-65, 44.12% id in 562 aa; methyl-accepting chemotaxis protein complement(3046666..3048348) Pectobacterium atrosepticum SCRI1043 2882991 YP_050804.1 CDS ECA2713 NC_004547.2 3049052 3049924 D Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo1503 or y2666 SWALL:AAM86219 (EMBL:AJ414148) (289 aa) fasta scores: E(): 1.1e-90, 79.93% id in 284 aa, and to Pseudomonas putida transcriptional regulator, LysR family pp3152 SWALL:AAN68760 (EMBL:AE016785) (288 aa) fasta scores: E(): 1.2e-58, 53.12% id in 288 aa; LysR family transcriptional regulator 3049052..3049924 Pectobacterium atrosepticum SCRI1043 2885570 YP_050805.1 CDS adhC NC_004547.2 3050037 3051158 D Similar to Escherichia coli alcohol dehydrogenase class III AdhC or b0356 SWALL:ADH3_ECOLI (SWALL:P25437) (369 aa) fasta scores: E(): 1.7e-102, 70.46% id in 369 aa, and to Yersinia pestis alcohol dehydrogenase class III, formaldehyde dehydrogenase adhc or y2667 SWALL:AAM86220 (EMBL:AE013869) (379 aa) fasta scores: E(): 2.3e-130, 91.93% id in 372 aa; alcohol dehydrogenase 3050037..3051158 Pectobacterium atrosepticum SCRI1043 2883902 YP_050806.1 CDS ECA2715 NC_004547.2 3051198 3052058 D Similar to Yersinia pestis esterase ypo1501 or y2668 SWALL:Q8ZG19 (EMBL:AJ414148) (280 aa) fasta scores: E(): 5.2e-93, 78.77% id in 278 aa, and to Salmonella typhi esterase sty2428 SWALL:Q8Z5A1 (EMBL:AL627273) (285 aa) fasta scores: E(): 1.3e-88, 74.55% id in 279 aa; esterase 3051198..3052058 Pectobacterium atrosepticum SCRI1043 2885571 YP_050807.1 CDS ECA2716 NC_004547.2 3052224 3052868 D Similar to Schizosaccharomyces pombe glutathione S-transferase III gst3 or spac688.04C SWALL:GTH3_SCHPO (SWALL:Q9P6M1) (242 aa) fasta scores: E(): 1.8e-23, 38.57% id in 210 aa, and to Xanthomonas axonopodis glutathione S-transferase GstA or xac2394 SWALL:Q8PJY3 (EMBL:AE011876) (232 aa) fasta scores: E(): 3.5e-41, 50.68% id in 219 aa; glutathione S-transferase 3052224..3052868 Pectobacterium atrosepticum SCRI1043 2885572 YP_050808.1 CDS ECA2717 NC_004547.2 3053229 3053441 D Similar to Yersinia pestis hypothetical protein ypo2434 or y1902 SWALL:Q8ZDW4 (EMBL:AJ414152) (70 aa) fasta scores: E(): 8.1e-05, 34.37% id in 64 aa, and to Caulobacter crescentus hypothetical protein Cc0128 SWALL:Q9ABU2 (EMBL:AE005687) (66 aa) fasta scores: E(): 0.0025, 31.25% id in 64 aa; hypothetical protein 3053229..3053441 Pectobacterium atrosepticum SCRI1043 2885573 YP_050809.1 CDS ECA2718 NC_004547.2 3053503 3054591 R member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein complement(3053503..3054591) Pectobacterium atrosepticum SCRI1043 2882891 YP_050810.1 CDS ECA2719 NC_004547.2 3054844 3056355 D Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein rbsa or atu2819 or agr_c_5112 SWALL:Q8UBN2 (EMBL:AE009229) (521 aa) fasta scores: E(): 7.1e-69, 41.66% id in 492 aa, and to Yersinia pestis sugar transport ATP-binding protein MglA or ypo0958 or y3345 SWALL:AAM86895 (EMBL:AJ414145) (499 aa) fasta scores: E(): 2.4e-67, 41.21% id in 495 aa; ABC transporter ATP-binding protein 3054844..3056355 Pectobacterium atrosepticum SCRI1043 2882892 YP_050811.1 CDS ECA2720 NC_004547.2 3056352 3057347 D Similar to Yersinia pestis ribose transport system, permease protein ypo1553 or y2615 SWALL:AAM86169 (EMBL:AJ414149) (331 aa) fasta scores: E(): 2.4e-101, 87.31% id in 331 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein rbsc or atu4322 or agr_l_1078 SWALL:Q8U7X7 (EMBL:AE009360) (327 aa) fasta scores: E(): 1.8e-31, 34.45% id in 328 aa; ABC transporter permease 3056352..3057347 Pectobacterium atrosepticum SCRI1043 2882893 YP_050812.1 CDS hprA NC_004547.2 3057901 3058890 R Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase complement(3057901..3058890) Pectobacterium atrosepticum SCRI1043 2885420 YP_050813.1 CDS ECA2722 NC_004547.2 3059363 3061480 R Similar to Vibrio cholerae iron-regulated outer membrane virulence protein precursor IrgA or vc0475 SWALL:IRGA_VIBCH (SWALL:P27772) (652 aa) fasta scores: E(): 9.1e-29, 35.05% id in 716 aa, and to Escherichia coli exogenous ferric siderophore receptor R4 SWALL:O87518 (EMBL:AF081285) (669 aa) fasta scores: E(): 2e-148, 55.45% id in 678 aa, and to Campylobacter coli ferric receptor CfrA cfrA SWALL:O07651 (EMBL:U80812) (696 aa) fasta scores: E(): 2.3e-77, 37.83% id in 703 aa; exogenous ferric siderophore TonB-dependent receptor complement(3059363..3061480) Pectobacterium atrosepticum SCRI1043 2885508 YP_050814.1 CDS lysP NC_004547.2 3061821 3063296 R Similar to Escherichia coli lysine-specific permease LysP or CadR or b2156 SWALL:LYSP_ECOLI (SWALL:P25737) (488 aa) fasta scores: E(): 1.2e-162, 84.64% id in 482 aa; lysine transporter complement(3061821..3063296) Pectobacterium atrosepticum SCRI1043 2882300 YP_050815.1 CDS rscR NC_004547.2 3063432 3064304 R Similar to Yersinia enterocolitica RscR SWALL:Q93DC5 (EMBL:AF394928) (290 aa) fasta scores: E(): 4.4e-91, 78.62% id in 290 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical transcriptional regulator yeie or b2157 or c2692 or z3414 or ecs3049 SWALL:YEIE_ECOLI (SWALL:P32484) (293 aa) fasta scores: E(): 1.1e-90, 76.57% id in 286 aa; DNA-binding transcriptional regulator complement(3063432..3064304) Pectobacterium atrosepticum SCRI1043 2884456 YP_050816.1 CDS ECA2725 NC_004547.2 3064423 3065496 D Similar to Yersinia pestis membrane protein ypo1307 SWALL:Q8ZGJ0 (EMBL:AJ414147) (362 aa) fasta scores: E(): 4.1e-76, 59.46% id in 338 aa, and to Salmonella typhi membrane protein sty2437 SWALL:Q8Z594 (EMBL:AL627273) (349 aa) fasta scores: E(): 2.6e-69, 57.69% id in 338 aa; hypothetical protein 3064423..3065496 Pectobacterium atrosepticum SCRI1043 2885509 YP_050817.1 CDS nfo NC_004547.2 3065575 3066420 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 3065575..3066420 Pectobacterium atrosepticum SCRI1043 2882806 YP_050818.1 CDS fruA NC_004547.2 3066702 3068393 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC complement(3066702..3068393) Pectobacterium atrosepticum SCRI1043 2884873 YP_050819.1 CDS fruK NC_004547.2 3068412 3069350 R converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase complement(3068412..3069350) Pectobacterium atrosepticum SCRI1043 2884525 YP_050820.1 CDS fruB NC_004547.2 3069347 3070480 R phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein complement(3069347..3070480) Pectobacterium atrosepticum SCRI1043 2884874 YP_050821.1 CDS sotA NC_004547.2 3070815 3071993 D Similar to Erwinia chrysanthemi sugar efflux transporter A SotA SWALL:SOTA_ERWCH (SWALL:Q9S3K0) (393 aa) fasta scores: E(): 3.9e-125, 80.72% id in 389 aa, and to Escherichia coli sugar efflux transporter B SetB or b2170 SWALL:SETB_ECOLI (SWALL:P33026) (393 aa) fasta scores: E(): 2.7e-116, 71.97% id in 389 aa; sugar efflux transporter 3070815..3071993 Pectobacterium atrosepticum SCRI1043 2884375 YP_050822.1 CDS ECA2731 NC_004547.2 3072004 3072258 R Similar to Yersinia pestis hypothetical protein ypo1286 or y2898 SWALL:Q8ZGK5 (EMBL:AJ414147) (84 aa) fasta scores: E(): 7.1e-22, 66.66% id in 84 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yeiw or b2170.1 or c2707 SWALL:YEIW_ECOLI (SWALL:P58039) (84 aa) fasta scores: E(): 1.7e-20, 64.28% id in 84 aa; hypothetical protein complement(3072004..3072258) Pectobacterium atrosepticum SCRI1043 2885510 YP_050823.1 CDS ECA2732 NC_004547.2 3072423 3072995 D Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 3072423..3072995 Pectobacterium atrosepticum SCRI1043 2882777 YP_050824.1 CDS ECA2733 NC_004547.2 3073082 3074083 D Similar to Yersinia pestis cobalamin synthesis protein ypo1277 or y2906 SWALL:AAM86457 (EMBL:AJ414147) (327 aa) fasta scores: E(): 9.2e-90, 70.6% id in 330 aa, and to Salmonella typhimurium, and Salmonella typhi cobalamin synthesis protein yeir or stm2212 or sty2448 SWALL:Q8XFI7 (EMBL:AE008799) (328 aa) fasta scores: E(): 9.7e-83, 66.26% id in 329 aa; hypothetical protein 3073082..3074083 Pectobacterium atrosepticum SCRI1043 2882778 YP_050825.1 CDS ECA2734 NC_004547.2 3074117 3074818 D Similar to Yersinia pestis membrane protein ypo1276 or y2907 SWALL:AAM86458 (EMBL:AJ414147) (233 aa) fasta scores: E(): 2.3e-66, 71.05% id in 228 aa, and to Salmonella typhimurium permease yeiu or stm2213 SWALL:Q8ZNK2 (EMBL:AE008799) (239 aa) fasta scores: E(): 1.3e-59, 66.22% id in 225 aa; membrane-bound phosphatase 3074117..3074818 Pectobacterium atrosepticum SCRI1043 2882779 YP_050826.1 CDS spr NC_004547.2 3075141 3075722 D by similarity, Spr seems to have peptidase activity; involved in thermoresistance; outer membrane lipoprotein 3075141..3075722 Pectobacterium atrosepticum SCRI1043 2884364 YP_050827.1 CDS ECA2736 NC_004547.2 3076165 3077973 D Similar to Yersinia pestis substrate-binding transport protein ypo1273 or y2910 SWALL:Q8ZGL6 (EMBL:AJ414147) (602 aa) fasta scores: E(): 1.5e-180, 69.6% id in 602 aa, and to Salmonella typhi transport system periplasmic binding protein sty2452 SWALL:Q8Z585 (EMBL:AL627273) (601 aa) fasta scores: E(): 4.8e-162, 62.29% id in 602 aa; ABC transporter periplasmic-binding protein 3076165..3077973 Pectobacterium atrosepticum SCRI1043 2882291 YP_050828.1 CDS ECA2737 NC_004547.2 3077983 3079080 D Similar to Yersinia pestis ABC transporter integral membrane subunit ypo1272 or y2911 SWALL:AAM86462 (EMBL:AJ414147) (366 aa) fasta scores: E(): 6.5e-118, 83.92% id in 367 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical ABC transporter permease protein yejb yejb or b2178 or z3437 or ecs3070 SWALL:YEJB_ECOLI (SWALL:P33914) (364 aa) fasta scores: E(): 6.4e-113, 81.09% id in 365 aa; binding-protein-dependent transporter 3077983..3079080 Pectobacterium atrosepticum SCRI1043 2882292 YP_050829.1 CDS ECA2738 NC_004547.2 3079077 3080102 D Similar to Yersinia pestis ABC transporter integral membrane subunit ypo1271 or y2912 SWALL:AAM86463 (EMBL:AJ414147) (342 aa) fasta scores: E(): 3.5e-106, 76.83% id in 341 aa, and to Escherichia coli hypothetical ABC transporter permease protein yeje or b2179 SWALL:YEJE_ECOLI (SWALL:P33915) (341 aa) fasta scores: E(): 6.2e-105, 75.58% id in 340 aa; ABC transporter permease 3079077..3080102 Pectobacterium atrosepticum SCRI1043 2882293 YP_050830.1 CDS ECA2739 NC_004547.2 3080104 3081720 D Similar to Yersinia pestis ABC transporter ATP-binding subunit ypo1270 SWALL:Q8ZGL9 (EMBL:AJ414147) (530 aa) fasta scores: E(): 1.2e-144, 74.85% id in 529 aa, and to Salmonella typhi ABC-transporter ATP-binding protein sty2455 SWALL:Q8Z583 (EMBL:AL627273) (529 aa) fasta scores: E(): 8.4e-139, 72.15% id in 528 aa; ABC transporter ATP-binding protein 3080104..3081720 Pectobacterium atrosepticum SCRI1043 2882294 YP_050831.1 CDS ECA2740 NC_004547.2 3081761 3082105 R Similar to Yersinia pestis hypothetical protein ypo1269 or y2914 SWALL:AAM86465 (EMBL:AJ414147) (114 aa) fasta scores: E(): 5e-30, 63.15% id in 114 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yejg or b2181 or c2718 or sf2268 SWALL:YEJG_ECOLI (SWALL:P33917) (114 aa) fasta scores: E(): 1.4e-27, 62.28% id in 114 aa; hypothetical protein complement(3081761..3082105) Pectobacterium atrosepticum SCRI1043 2885436 YP_050832.1 CDS bcr NC_004547.2 3082493 3083683 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system complement(3082493..3083683) Pectobacterium atrosepticum SCRI1043 2882549 YP_050833.1 CDS rsuA NC_004547.2 3083724 3084419 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A complement(3083724..3084419) Pectobacterium atrosepticum SCRI1043 2884442 YP_050834.1 CDS ECA2743 NC_004547.2 3084634 3084873 D Similar to Escherichia coli hypothetical protein yech or b1906 SWALL:YECH_ECOLI (SWALL:P46887) (79 aa) fasta scores: E(): 5.8e-18, 62.02% id in 79 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yech or stm1936 or sty2144 SWALL:Q8XGI3 (EMBL:AE008786) (79 aa) fasta scores: E(): 1.1e-16, 59.49% id in 79 aa; hypothetical protein 3084634..3084873 Pectobacterium atrosepticum SCRI1043 2885437 YP_050835.1 CDS ECA2744 NC_004547.2 3084876 3086636 D Similar to Yersinia pestis dead box helicase family protein ypo1265 or y2919 SWALL:AAM86469 (EMBL:AJ414147) (585 aa) fasta scores: E(): 6.6e-185, 80.3% id in 584 aa, and to Salmonella typhimurium, and Salmonella typhi ATP-dependent helicase yejh or stm2223 or sty2460 SWALL:Q8XGB8 (EMBL:AE008799) (586 aa) fasta scores: E(): 2.5e-180, 77.81% id in 586 aa; helicase 3084876..3086636 Pectobacterium atrosepticum SCRI1043 2885438 YP_050836.1 CDS rplY NC_004547.2 3086967 3087251 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 3086967..3087251 Pectobacterium atrosepticum SCRI1043 2883131 YP_050837.1 CDS ECA2746 NC_004547.2 3087351 3088499 D Similar to Pseudomonas putida membrane protein, pp2419 SWALL:AAN68031 (EMBL:AE016783) (421 aa) fasta scores: E(): 2.1e-92, 61.37% id in 378 aa, and to Ralstonia solanacearum hypothetical protein rsc2728 or rs00126 SWALL:Q8XVU9 (EMBL:AL646071) (382 aa) fasta scores: E(): 2.9e-71, 49.86% id in 377 aa; hypothetical protein 3087351..3088499 Pectobacterium atrosepticum SCRI1043 2885439 YP_050838.1 CDS ECA2747 NC_004547.2 3088583 3089593 R Similar to Escherichia coli 37 kDa nucleoid-associated protein yejk or b2186 SWALL:NA37_ECOLI (SWALL:P33920) (334 aa) fasta scores: E(): 2.6e-104, 80.53% id in 334 aa; nucleoid-associated protein NdpA complement(3088583..3089593) Pectobacterium atrosepticum SCRI1043 2882108 YP_050839.1 CDS ECA2748 NC_004547.2 3089796 3090026 D Similar to Yersinia pestis hypothetical protein Ypo1261 SWALL:Q8ZGM6 (EMBL:AJ414147) (75 aa) fasta scores: E(): 4.5e-22, 85.52% id in 76 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yejl or stm2227 or sty2465 SWALL:Q8XEL6 (EMBL:AE008799) (75 aa) fasta scores: E(): 1.6e-19, 78.94% id in 76 aa; hypothetical protein 3089796..3090026 Pectobacterium atrosepticum SCRI1043 2882109 YP_050840.1 CDS ECA2749 NC_004547.2 3090041 3091789 D Similar to Salmonella typhi sulphatase sty2466 SWALL:Q8Z579 (EMBL:AL627273) (586 aa) fasta scores: E(): 5.5e-146, 60.47% id in 587 aa, and to Shigella flexneri sulfatase yejm or sf2275 SWALL:AAN43794 (EMBL:AE015243) (586 aa) fasta scores: E(): 3.6e-143, 59.11% id in 587 aa; sulfatase 3090041..3091789 Pectobacterium atrosepticum SCRI1043 2881959 YP_050841.1 CDS intA NC_004547.2 3092131 3093381 D Similar to Escherichia coli prophage cp4-57 integrase inta or slpa or intx or b2622 SWALL:INTA_ECOLI (SWALL:P32053) (413 aa) fasta scores: E(): 1e-90, 58.56% id in 403 aa; prophage integrase 3092131..3093381 Pectobacterium atrosepticum SCRI1043 2881279 YP_050842.1 CDS ECA2751 NC_004547.2 3093528 3094412 D phage-like protein 3093528..3094412 Pectobacterium atrosepticum SCRI1043 2881960 YP_050843.1 CDS ECA2752 NC_004547.2 3094518 3094733 D Similar to Bacteriophage P4 hypothetical 9.7 kDa protein SWALL:Y9K_BPP4 (SWALL:P12552) (88 aa) fasta scores: E(): 0.034, 41.86% id in 43 aa, and to Pseudomonas aeruginosa phage-related protein SWALL:Q8GPP9 (EMBL:AF440524) (72 aa) fasta scores: E(): 0.0038, 31.66% id in 60 aa; hypothetical protein 3094518..3094733 Pectobacterium atrosepticum SCRI1043 2881961 YP_050844.1 CDS ECA2753 NC_004547.2 3094786 3095613 D Its C-terminal region is similar to Yersinia pestis prophage protein ypo1091 or y3086 SWALL:Q8ZH22 (EMBL:AJ414146) (180 aa) fasta scores: E(): 1.7e-06, 52.83% id in 53 aa; phage-like protein 3094786..3095613 Pectobacterium atrosepticum SCRI1043 2881962 YP_050845.1 CDS ECA2754 NC_004547.2 3095610 3098216 D Similar to Escherichia coli O157:H7 alpha replication protein of prophage cp-933i z0339 or ecs0303 SWALL:Q8X7I5 (EMBL:AE005204) (796 aa) fasta scores: E(): 1.3e-10, 28.27% id in 633 aa, and to Pasteurella multocida hypothetical protein Pm1782 SWALL:Q9CK52 (EMBL:AE006215) (725 aa) fasta scores: E(): 9.7e-95, 45.25% id in 590 aa, and to Bacteriophage P4 DNA primase SWALL:Q8LTT9 (EMBL:AF509493) (362 aa) fasta scores: E(): 2.3e-41, 47.26% id in 347 aa; prophage primase 3095610..3098216 Pectobacterium atrosepticum SCRI1043 2881869 YP_050846.1 CDS ECA2755 NC_004547.2 3098462 3098917 D hypothetical protein 3098462..3098917 Pectobacterium atrosepticum SCRI1043 2881870 YP_050847.1 CDS ECA2756 NC_004547.2 3099005 3100030 D hypothetical protein 3099005..3100030 Pectobacterium atrosepticum SCRI1043 2881871 YP_050848.1 CDS ECA2757 NC_004547.2 3100258 3100503 D Similar to Agrobacterium tumefaciens hypothetical protein atu1783 or agr_c_3279 SWALL:Q8UEH4 (EMBL:AE009134) (122 aa) fasta scores: E(): 4e-09, 46.83% id in 79 aa, and to Rhizobium loti hypothetical protein Msr2423 SWALL:Q98IF7 (EMBL:AP002999) (81 aa) fasta scores: E(): 1.1e-08, 45.2% id in 73 aa; hypothetical protein 3100258..3100503 Pectobacterium atrosepticum SCRI1043 2881999 YP_050849.1 CDS ECA2758 NC_004547.2 3100493 3100777 D Similar to Rhizobium sp. hypothetical 11.0 kDa protein Y4kP SWALL:Y4KP_RHISN (SWALL:P55534) (96 aa) fasta scores: E(): 4.6e-10, 43.82% id in 89 aa, and to Agrobacterium tumefaciens hypothetical protein atu1782 or agr_c_3278 SWALL:Q8UEH5 (EMBL:AE009134) (96 aa) fasta scores: E(): 4.5e-09, 42.22% id in 90 aa; hypothetical protein 3100493..3100777 Pectobacterium atrosepticum SCRI1043 2882000 YP_050850.1 CDS ECA2759 NC_004547.2 3100823 3101182 D hypothetical protein 3100823..3101182 Pectobacterium atrosepticum SCRI1043 2882001 YP_050851.1 CDS ECA2760 NC_004547.2 3101846 3102175 R Similar to Ralstonia solanacearum hypothetical protein rsc1958 or rs03532 SWALL:Q8XY05 (EMBL:AL646067) (113 aa) fasta scores: E(): 8.8e-34, 72.56% id in 113 aa, and to Bradyrhizobium japonicum Bll3987 protein Bll3987 SWALL:BAC49252 (EMBL:AP005949) (110 aa) fasta scores: E(): 3.7e-26, 58.18% id in 110 aa; hypothetical protein complement(3101846..3102175) Pectobacterium atrosepticum SCRI1043 2882015 YP_050852.1 CDS ECA2761 NC_004547.2 3102235 3102771 R Similar to Escherichia coli hypothetical protein ygap or b2668 SWALL:YGAP_ECOLI (SWALL:P55734) (174 aa) fasta scores: E(): 3.5e-33, 57.48% id in 167 aa, and to Salmonella typhi hypothetical protein Sty2918 SWALL:Q8Z4F4 (EMBL:AL627276) (175 aa) fasta scores: E(): 2.9e-30, 52.69% id in 167 aa; hypothetical protein complement(3102235..3102771) Pectobacterium atrosepticum SCRI1043 2882016 YP_050853.1 CDS ECA2762 NC_004547.2 3103135 3104562 D Similar to Yersinia pestis sugar transporter ypo1571 or y2593 SWALL:Q8ZFV6 (EMBL:AJ414149) (476 aa) fasta scores: E(): 5.3e-144, 75.37% id in 463 aa, and to Salmonella typhi inner membrane protein sty2216 SWALL:Q8Z5P2 (EMBL:AL627273) (485 aa) fasta scores: E(): 2.7e-124, 67.25% id in 455 aa; hypothetical protein 3103135..3104562 Pectobacterium atrosepticum SCRI1043 2882017 YP_050854.1 CDS ECA2763 NC_004547.2 3104605 3105774 R Similar to Escherichia coli cyanate transport protein CynX or b0341 SWALL:CYNX_ECOLI (SWALL:P17583) (384 aa) fasta scores: E(): 5.1e-43, 35.35% id in 379 aa, and to Pseudomonas indigofera IgiE SWALL:Q9RBX3 (EMBL:AF088856) (408 aa) fasta scores: E(): 8.8e-56, 43.65% id in 378 aa; transport protein complement(3104605..3105774) Pectobacterium atrosepticum SCRI1043 2881492 YP_050855.1 CDS ompX NC_004547.2 3106053 3106568 R OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X complement(3106053..3106568) Pectobacterium atrosepticum SCRI1043 2883316 YP_050856.1 CDS ECA2765 NC_004547.2 3106945 3107832 D Similar to Yersinia pestis membrane protein ypo2507 or y1680 SWALL:AAM85249 (EMBL:AJ414152) (295 aa) fasta scores: E(): 8.1e-81, 73.92% id in 280 aa, and to Salmonella typhimurium hypothetical transport protein ybif or stm0832 SWALL:YBIF_SALTY (SWALL:P74867) (295 aa) fasta scores: E(): 8.1e-74, 71.53% id in 274 aa; threonine and homoserine efflux system 3106945..3107832 Pectobacterium atrosepticum SCRI1043 2881493 YP_050857.1 CDS ECA2766 NC_004547.2 3107820 3108374 R Similar to Vibrio vulnificus adenylate kinase vv12472 SWALL:AAO10836 (EMBL:AE016805) (177 aa) fasta scores: E(): 9.2e-37, 55.42% id in 175 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4799 SWALL:Q9HV10 (EMBL:AE004893) (192 aa) fasta scores: E(): 4.4e-17, 32.92% id in 164 aa; hypothetical protein complement(3107820..3108374) Pectobacterium atrosepticum SCRI1043 2881494 YP_050858.1 CDS dps NC_004547.2 3108684 3109187 D binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps 3108684..3109187 Pectobacterium atrosepticum SCRI1043 2882216 YP_050859.1 CDS glnH NC_004547.2 3109585 3110331 D similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein 3109585..3110331 Pectobacterium atrosepticum SCRI1043 2881770 YP_050860.1 CDS glnP NC_004547.2 3110358 3111017 D similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease 3110358..3111017 Pectobacterium atrosepticum SCRI1043 2881776 YP_050861.1 CDS glnQ NC_004547.2 3111014 3111736 D similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 3111014..3111736 Pectobacterium atrosepticum SCRI1043 2881329 YP_050862.1 CDS ECA2771 NC_004547.2 3111776 3113644 R Similar to Vibrio cholerae peptidase, vc1983 SWALL:Q9KQL5 (EMBL:AE004273) (615 aa) fasta scores: E(): 4.1e-135, 56.13% id in 611 aa, and to Vibrio vulnificus oligoendopeptidase F vv21400 SWALL:AAO08281 (EMBL:AE016813) (615 aa) fasta scores: E(): 1.7e-132, 53.34% id in 613 aa; peptidase complement(3111776..3113644) Pectobacterium atrosepticum SCRI1043 2881495 YP_050863.1 CDS ECA2772 NC_004547.2 3113731 3114699 R Similar to Escherichia coli hypothetical protein ybib or b0800 SWALL:YBIB_ECOLI (SWALL:P30177) (320 aa) fasta scores: E(): 8.8e-82, 63.95% id in 319 aa, and to Yersinia pestis glycosyl transferase ypo2522 or y1665 SWALL:Q8ZDN8 (EMBL:AJ414152) (319 aa) fasta scores: E(): 3.3e-79, 66.03% id in 318 aa; glycosyl transferase family protein complement(3113731..3114699) Pectobacterium atrosepticum SCRI1043 2885309 YP_050864.1 CDS ECA2773 NC_004547.2 3114709 >3114921 R Similar to the N-terminal regions of many including Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa, and to Pectobacterium carotovorum subsp. carotovorum tail sheath protein SWALL:Q9KW62 (EMBL:AB045036) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa; bacteriophage tail sheath protein (partial) complement(3114709..>3114921) Pectobacterium atrosepticum SCRI1043 2885310 YP_050865.1 CDS ECA2774 NC_004547.2 3114911 3115108 R Similar to Salmonella typhimurium cytoplasmic protein stm4214 SWALL:Q8ZKJ1 (EMBL:AE008897) (65 aa) fasta scores: E(): 2.6e-10, 54.68% id in 64 aa, and to Salmonella typhi hypothetical protein Sty1624 SWALL:Q8Z6U2 (EMBL:AL627270) (84 aa) fasta scores: E(): 6.4e-10, 64.58% id in 48 aa; hypothetical protein complement(3114911..3115108) Pectobacterium atrosepticum SCRI1043 2885311 YP_050866.1 CDS ECA2775 NC_004547.2 3115105 3115545 R Similar to Salmonella typhi hypothetical protein Sty1623 SWALL:Q8Z6U3 (EMBL:AL627270) (154 aa) fasta scores: E(): 3e-18, 41.09% id in 146 aa, and to Salmonella typhimurium cytoplasmic protein stm4215 SWALL:Q8ZKJ0 (EMBL:AE008897) (151 aa) fasta scores: E(): 8.9e-12, 43.24% id in 111 aa; hypothetical protein complement(3115105..3115545) Pectobacterium atrosepticum SCRI1043 2885312 YP_050867.1 CDS ECA2776 NC_004547.2 3115834 3116145 R Similar to Salmonella typhi hypothetical protein Sty1613 SWALL:Q8Z6V3 (EMBL:AL627270) (103 aa) fasta scores: E(): 9.4e-20, 59.4% id in 101 aa; hypothetical protein complement(3115834..3116145) Pectobacterium atrosepticum SCRI1043 2885149 YP_050868.1 CDS ECA2777 NC_004547.2 3116138 3116467 R Similar to Salmonella typhimurium inner membrane protein stm4216 SWALL:Q8ZKI9 (EMBL:AE008897) (104 aa) fasta scores: E(): 5e-27, 69.15% id in 107 aa, and to Salmonella typhi membrane protein sty1612 SWALL:Q8Z6V4 (EMBL:AL627270) (108 aa) fasta scores: E(): 5.4e-22, 60.18% id in 108 aa; hypothetical protein complement(3116138..3116467) Pectobacterium atrosepticum SCRI1043 2885150 YP_050869.1 CDS ECA2778 NC_004547.2 3116457 3117131 R Similar to Salmonella typhi lipoprotein sty1611 SWALL:Q8Z6V5 (EMBL:AL627270) (216 aa) fasta scores: E(): 2.4e-21, 43.13% id in 204 aa; hypothetical protein complement(3116457..3117131) Pectobacterium atrosepticum SCRI1043 2884628 YP_050870.1 CDS ECA2779 NC_004547.2 3117121 3117732 R Similar to Salmonella typhimurium soluble lytic murein transglycosylase stm4217 SWALL:Q8ZKI8 (EMBL:AE008897) (201 aa) fasta scores: E(): 9.4e-53, 62.87% id in 202 aa; transglycosylase complement(3117121..3117732) Pectobacterium atrosepticum SCRI1043 2884629 YP_050871.1 CDS ECA2780 NC_004547.2 3117734 3118063 R Similar to Salmonella typhi hypothetical protein Sty1608 SWALL:Q8Z6V8 (EMBL:AL627270) (116 aa) fasta scores: E(): 6.3e-27, 66.03% id in 106 aa, and to Salmonella typhimurium inner membrane protein stm4218 SWALL:Q8ZKI7 (EMBL:AE008897) (95 aa) fasta scores: E(): 1.9e-12, 52.29% id in 109 aa; hypothetical protein complement(3117734..3118063) Pectobacterium atrosepticum SCRI1043 2884630 YP_050872.1 CDS prtF NC_004547.2 3118174 3119520 R Similar to Erwinia chrysanthemi proteases secretion protein PrtF precursor SWALL:PRTF_ERWCH (SWALL:P23598) (462 aa) fasta scores: E(): 3.6e-123, 73.25% id in 445 aa. Also similar to ECA1534 (48.956% in 431 aa overlap; protease secretion protein complement(3118174..3119520) Pectobacterium atrosepticum SCRI1043 2882497 YP_050873.1 CDS prtE NC_004547.2 3119523 3120851 R Similar to Erwinia chrysanthemi proteases secretion protein PrtE SWALL:PRTE_ERWCH (SWALL:P23597) (448 aa) fasta scores: E(): 9.7e-110, 72.33% id in 441 aa. Also similar to ECA1535 (47.529% in 425 aa overlap; protease secretion protein complement(3119523..3120851) Pectobacterium atrosepticum SCRI1043 2882496 YP_050874.1 CDS prtD NC_004547.2 3120880 3122607 R Similar to Erwinia chrysanthemi proteases secretion ATP-binding protein PrtD SWALL:PRTD_ERWCH (SWALL:P23596) (575 aa) fasta scores: E(): 1.2e-155, 74.6% id in 575 aa. Also similar to ECA1536 (58.719% in 562 aa overlap; protease secretion ATP-binding protein complement(3120880..3122607) Pectobacterium atrosepticum SCRI1043 2882534 YP_050875.1 CDS inh NC_004547.2 3122625 3122936 R Similar to Pectobacterium carotovorum subsp. carotovorum protease inhibitor Inh SWALL:Q9RB19 (EMBL:AF141295) (103 aa) fasta scores: E(): 4.8e-37, 89.32% id in 103 aa, and to Erwinia chrysanthemi proteinase inhibitor precursor Inh SWALL:INH_ERWCH (SWALL:P18958) (120 aa) fasta scores: E(): 7.6e-21, 57.28% id in 103 aa; protease inhibitor complement(3122625..3122936) Pectobacterium atrosepticum SCRI1043 2881773 YP_050876.1 CDS prtW NC_004547.2 3123040 3124449 R Similar to Pectobacterium carotovorum subsp. carotovorum metalloprotease PrtW SWALL:Q9RB20 (EMBL:AF141295) (473 aa) fasta scores: E(): 4.7e-142, 84.51% id in 478 aa, and to Erwinia chrysanthemi secreted protease C precursor PrtC SWALL:PRTX_ERWCH (SWALL:P19144) (478 aa) fasta scores: E(): 5.8e-116, 66.03% id in 471 aa; metalloprotease complement(3123040..3124449) Pectobacterium atrosepticum SCRI1043 2882498 YP_050877.1 CDS dinG NC_004547.2 3125091 3127190 R helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG complement(3125091..3127190) Pectobacterium atrosepticum SCRI1043 2883355 YP_050878.1 CDS ECA2787 NC_004547.2 3127356 3128189 D Similar to Pseudomonas putida transcriptional regulator, AraC family pp3022 SWALL:AAN68630 (EMBL:AE016785) (269 aa) fasta scores: E(): 5.3e-24, 35.03% id in 274 aa, and to Rhizobium meliloti transcription regulator protein r01128 or smc00558 SWALL:Q92R06 (EMBL:AL591786) (285 aa) fasta scores: E(): 1.2e-17, 29.65% id in 263 aa; AraC family transcriptional regulator 3127356..3128189 Pectobacterium atrosepticum SCRI1043 2884631 YP_050879.1 CDS ECA2788 NC_004547.2 3128242 3128889 D Similar to Escherichia coli, and Escherichia coli O157:H7 threonine efflux protein RhtC or b3823 or z5344 or ecs4753 SWALL:RHTC_ECOLI (SWALL:P27846) (206 aa) fasta scores: E(): 2.5e-13, 32.05% id in 209 aa, and to Pseudomonas putida transporter, LysE family pp3021 SWALL:AAN68629 (EMBL:AE016785) (204 aa) fasta scores: E(): 8.9e-26, 42.71% id in 199 aa; LysE family translocator 3128242..3128889 Pectobacterium atrosepticum SCRI1043 2884819 YP_050880.1 CDS ECA2789 NC_004547.2 3129173 3129712 R Similar to Escherichia coli isopentenyl-diphosphate delta-isomerase Idi or b2889 SWALL:IDI_ECOLI (SWALL:Q46822) (182 aa) fasta scores: E(): 2.5e-13, 33.12% id in 163 aa, and to Streptomyces coelicolor probable isopentenyl-diphosphate delta-isomerase idi or sco6750 or sc5f2a.33C SWALL:IDI_STRCO (SWALL:Q9X7Q6) (197 aa) fasta scores: E(): 9.6e-20, 42.58% id in 155 aa; isopentenyl-diphosphate delta-isomerase complement(3129173..3129712) Pectobacterium atrosepticum SCRI1043 2884820 YP_050881.1 CDS bglX NC_004547.2 3129835 3132141 R Similar to Escherichia coli periplasmic beta-glucosidase precursor BglX or b2132 SWALL:BGLX_ECOLI (SWALL:P33363) (765 aa) fasta scores: E(): 3.4e-216, 73.3% id in 768 aa, and to Salmonella typhimurium periplasmic beta-glucosidase precursor BglX or stm2166 SWALL:BGLX_SALTY (SWALL:Q56078) (765 aa) fasta scores: E(): 3.9e-217, 73.17% id in 768 aa; periplasmic beta-glucosidase complement(3129835..3132141) Pectobacterium atrosepticum SCRI1043 2881981 YP_050882.1 CDS ECA2791 NC_004547.2 3132533 3133219 D Similar to Erwinia chrysanthemi hypothetical protein SWALL:Q8KKB6 (EMBL:AF503595) (205 aa) fasta scores: E(): 1.4e-53, 72.22% id in 180 aa, and to Agrobacterium tumefaciens glutathione S-transferase atu1394 or agr_c_2575 SWALL:Q8UFK3 (EMBL:AE009100) (254 aa) fasta scores: E(): 3.8e-56, 58.77% id in 228 aa; glutathione S-transferase 3132533..3133219 Pectobacterium atrosepticum SCRI1043 2884821 YP_050883.1 CDS pbpG NC_004547.2 3133295 3134242 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(3133295..3134242) Pectobacterium atrosepticum SCRI1043 2881428 YP_050884.1 CDS ECA2793 NC_004547.2 3134393 3134902 R Similar to Ralstonia solanacearum probable transmembrane protein rsp1154 or rs05433 SWALL:Q8XQR7 (EMBL:AL646083) (164 aa) fasta scores: E(): 5.6e-06, 30.76% id in 169 aa; hypothetical protein complement(3134393..3134902) Pectobacterium atrosepticum SCRI1043 2885014 YP_050885.1 CDS ECA2794 NC_004547.2 3134965 3135321 R Similar to Thermoanaerobacter tengcongensis major membrane immunogen tte2480 SWALL:Q8R7D5 (EMBL:AE013189) (138 aa) fasta scores: E(): 0.61, 35% id in 140 aa, and to Clostridium acetobutylicum uncharacterized conserved protein cac2767 SWALL:Q97FH2 (EMBL:AE007774) (133 aa) fasta scores: E(): 0.0033, 31.86% id in 91 aa; hypothetical protein complement(3134965..3135321) Pectobacterium atrosepticum SCRI1043 2885015 YP_050886.1 CDS cyaB NC_004547.2 3135382 3135924 R Similar to Aeromonas hydrophila adenylate cyclase CyaB SWALL:O69199 (EMBL:AJ223730) (191 aa) fasta scores: E(): 1.8e-29, 46.55% id in 174 aa, and to Yersinia pestis adenylate cyclase 2 CyaB or ypo1178 or y3011 SWALL:Q8ZGU9 (EMBL:AJ414146) (179 aa) fasta scores: E(): 5.7e-34, 52.51% id in 179 aa; adenylate cyclase complement(3135382..3135924) Pectobacterium atrosepticum SCRI1043 2883327 YP_050887.1 CDS ECA2796 NC_004547.2 3136322 3136870 R hypothetical protein complement(3136322..3136870) Pectobacterium atrosepticum SCRI1043 2885016 YP_050888.1 CDS mmuM NC_004547.2 3136895 3137830 R converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines; homocysteine methyltransferase complement(3136895..3137830) Pectobacterium atrosepticum SCRI1043 2882944 YP_050889.1 CDS mmuP NC_004547.2 3137823 3139235 R Similar to Escherichia coli probable S-methylmethionine permease MmuP or b0260 SWALL:MMUP_ECOLI (SWALL:Q47689) (467 aa) fasta scores: E(): 1.6e-153, 83.59% id in 445 aa; S-methylmethionine transporter complement(3137823..3139235) Pectobacterium atrosepticum SCRI1043 2882945 YP_050890.1 CDS ECA2799 NC_004547.2 3139631 3140563 R Similar to Escherichia coli hypothetical protein yohi yohi or b2140 SWALL:YOHI_ECOLI (SWALL:P33371) (315 aa) fasta scores: E(): 2.9e-108, 85.34% id in 307 aa, and to Yersinia pestis hypothetical protein ypo1175 ypo1175 or y3015 SWALL:Q8ZGV2 (EMBL:AJ414146) (314 aa) fasta scores: E(): 1.2e-107, 87.62% id in 307 aa; tRNA-dihydrouridine synthase C complement(3139631..3140563) Pectobacterium atrosepticum SCRI1043 2885017 YP_050891.1 CDS ECA2800 NC_004547.2 3140808 3141479 D Similar to Xylella fastidiosa hypothetical protein Xf2273 SWALL:Q9PB71 (EMBL:AE004039) (236 aa) fasta scores: E(): 4.2e-73, 76.52% id in 213 aa, and to Xanthomonas axonopodis hypothetical protein Xac0332 SWALL:Q8PQJ1 (EMBL:AE011659) (218 aa) fasta scores: E(): 1.2e-72, 74.88% id in 215 aa; hypothetical protein 3140808..3141479 Pectobacterium atrosepticum SCRI1043 2885011 YP_050892.1 CDS ECA2801 NC_004547.2 3141526 3143121 R Similar to Escherichia coli periplasmic dipeptide transport protein precursor DppA or b3544 SWALL:DPPA_ECOLI (SWALL:P23847) (535 aa) fasta scores: E(): 9.4e-154, 66.66% id in 531 aa; periplasmic dipeptide transport protein complement(3141526..3143121) Pectobacterium atrosepticum SCRI1043 2885012 YP_050893.1 CDS ECA2802 NC_004547.2 3143262 3144491 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 3143262..3144491 Pectobacterium atrosepticum SCRI1043 2885013 YP_050894.1 CDS ECA2803 NC_004547.2 3144548 3145018 R Similar to Yersinia enterocolitica hypothetical 17.2 kDa protein SWALL:Q9F4G8 (EMBL:AY008264) (152 aa) fasta scores: E(): 1e-21, 40.13% id in 152 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:BAC41696 (EMBL:AB088420) (145 aa) fasta scores: E(): 4.7e-11, 36.77% id in 155 aa; hypothetical protein complement(3144548..3145018) Pectobacterium atrosepticum SCRI1043 2885008 YP_050895.1 CDS ECA2804 NC_004547.2 3145015 3145458 R Similar to Yersinia enterocolitica hypothetical 16.3 kDa protein SWALL:Q9F4G7 (EMBL:AY008264) (148 aa) fasta scores: E(): 2.5e-16, 40.14% id in 142 aa, and to Yersinia pestis hypothetical protein ypo2345 or y1987 SWALL:Q8ZE40 (EMBL:AJ414152) (148 aa) fasta scores: E(): 1.3e-15, 38.84% id in 139 aa; hypothetical protein complement(3145015..3145458) Pectobacterium atrosepticum SCRI1043 2885009 YP_050896.1 CDS rhlE NC_004547.2 3145672 3147123 R this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE complement(3145672..3147123) Pectobacterium atrosepticum SCRI1043 2884635 YP_050897.1 CDS cbrD NC_004547.2 3147401 3148240 R Similar to Erwinia chrysanthemi achromobactin transport ATP-binding protein CbrD SWALL:CBRD_ERWCH (SWALL:Q47087) (273 aa) fasta scores: E(): 3.9e-64, 70.75% id in 253 aa; achromobactin transport ATP-binding protein complement(3147401..3148240) Pectobacterium atrosepticum SCRI1043 2881349 YP_050898.1 CDS cbrC NC_004547.2 3148253 3149284 R Similar to Erwinia chrysanthemi achromobactin transport system permease protein CbrC SWALL:CBRC_ERWCH (SWALL:Q47086) (349 aa) fasta scores: E(): 4.9e-69, 61.91% id in 344 aa; achromobactin transport system permease complement(3148253..3149284) Pectobacterium atrosepticum SCRI1043 2881456 YP_050899.1 CDS cbrB NC_004547.2 3149277 3150266 R Similar to Erwinia chrysanthemi achromobactin transport system permease protein CbrB SWALL:CBRB_ERWCH (SWALL:Q47085) (340 aa) fasta scores: E(): 8.6e-66, 58.15% id in 325 aa; achromobactin transport system permease complement(3149277..3150266) Pectobacterium atrosepticum SCRI1043 2881455 YP_050900.1 CDS cbrA NC_004547.2 3150263 3151270 R Similar to Erwinia chrysanthemi achromobactin-binding periplasmic protein precursor CbrA SWALL:CBRA_ERWCH (SWALL:Q47084) (305 aa) fasta scores: E(): 1.5e-62, 63.74% id in 262 aa; achromobactin-binding periplasmic protein complement(3150263..3151270) Pectobacterium atrosepticum SCRI1043 2881454 YP_050901.1 CDS acr NC_004547.2 3151288 3153402 R Similar to Erwinia chrysanthemi Acr SWALL:Q93AT9 (EMBL:AF416740) (482 aa) fasta scores: E(): 2.5e-108, 57.76% id in 483 aa; TonB-dependent ferric achromobactin receptor complement(3151288..3153402) Pectobacterium atrosepticum SCRI1043 2884690 YP_050902.1 CDS ECA2811 NC_004547.2 3153545 3153841 D hypothetical protein 3153545..3153841 Pectobacterium atrosepticum SCRI1043 2885010 YP_050903.1 CDS ECA2812 NC_004547.2 3153852 3154559 R Similar to Yersinia pestis membrane protein ypo1163 or y3018 SWALL:Q8ZGW1 (EMBL:AJ414146) (236 aa) fasta scores: E(): 7.9e-73, 86.01% id in 236 aa, and to Salmonella typhimurium permease ybhl or stm0807 SWALL:Q8ZQP9 (EMBL:AE008733) (234 aa) fasta scores: E(): 1.7e-70, 83.4% id in 235 aa; hypothetical protein complement(3153852..3154559) Pectobacterium atrosepticum SCRI1043 2885004 YP_050904.1 CDS moaE NC_004547.2 3154672 3155124 R catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE complement(3154672..3155124) Pectobacterium atrosepticum SCRI1043 2882318 YP_050905.1 CDS moaD NC_004547.2 3155127 3155372 R catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit complement(3155127..3155372) Pectobacterium atrosepticum SCRI1043 2882317 YP_050906.1 CDS moaC NC_004547.2 3155369 3155863 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(3155369..3155863) Pectobacterium atrosepticum SCRI1043 2882845 YP_050907.1 CDS moaB NC_004547.2 3155882 3156400 R Similar to Escherichia coli, and Escherichia coli O157:H7 molybdenum cofactor biosynthesis protein B MoaB or ChlA2 or b0782 or z1001 or ecs0860 SWALL:MOAB_ECOLI (SWALL:P30746) (169 aa) fasta scores: E(): 4.2e-45, 70.41% id in 169 aa; molybdenum cofactor biosynthesis protein B complement(3155882..3156400) Pectobacterium atrosepticum SCRI1043 2882844 YP_050908.1 CDS moaA NC_004547.2 3156435 3157424 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(3156435..3157424) Pectobacterium atrosepticum SCRI1043 2882843 YP_050909.1 CDS ECA2818 NC_004547.2 3157972 3158883 D Similar to Salmonella typhimurium hypothetical upf0052 protein ybhk or stm0801 SWALL:YBHK_SALTY (SWALL:P58586) (302 aa) fasta scores: E(): 1.5e-88, 79.47% id in 302 aa, and to Escherichia coli O6 hypothetical protein ybhk or c0861 SWALL:Q8FJP7 (EMBL:AE016757) (322 aa) fasta scores: E(): 2.7e-87, 78.8% id in 302 aa; hypothetical protein 3157972..3158883 Pectobacterium atrosepticum SCRI1043 2885005 YP_050910.1 CDS ECA2819 NC_004547.2 3158880 3159311 R Weakly similar to Bacillus subtilis hypothetical protein YsfE SWALL:P94533 (EMBL:Z75208) (80 aa) fasta scores: E(): 0.92, 30% id in 60 aa; hypothetical protein complement(3158880..3159311) Pectobacterium atrosepticum SCRI1043 2885006 YP_050911.1 CDS uvrB NC_004547.2 3159374 3161386 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(3159374..3161386) Pectobacterium atrosepticum SCRI1043 2882960 YP_050912.1 CDS ECA2821 NC_004547.2 3161430 3161651 D Doubtful CDS. No significant database matches; hypothetical protein 3161430..3161651 Pectobacterium atrosepticum SCRI1043 2885007 YP_050913.1 CDS bioD NC_004547.2 3162450 3163130 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(3162450..3163130) Pectobacterium atrosepticum SCRI1043 2881979 YP_050914.1 CDS bioC NC_004547.2 3163123 3163884 R Similar to Escherichia coli biotin synthesis protein BioC or b0777 SWALL:BIOC_ECOLI (SWALL:P12999) (251 aa) fasta scores: E(): 2e-48, 54.8% id in 250 aa, and to Erwinia herbicola biotin synthesis protein BioC SWALL:BIOC_ERWHE (SWALL:O06898) (251 aa) fasta scores: E(): 1.1e-43, 52.22% id in 247 aa; biotin synthesis protein complement(3163123..3163884) Pectobacterium atrosepticum SCRI1043 2881978 YP_050915.1 CDS bioF NC_004547.2 3163865 3165022 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(3163865..3165022) Pectobacterium atrosepticum SCRI1043 2881980 YP_050916.1 CDS bioB NC_004547.2 3165062 3166099 R Similar to Escherichia coli biotin synthase BioB or b0775 SWALL:BIOB_ECOLI (SWALL:P12996) (346 aa) fasta scores: E(): 1.5e-117, 83.72% id in 344 aa, and to Erwinia herbicola biotin synthase BioB SWALL:BIOB_ERWHE (SWALL:Q47862) (346 aa) fasta scores: E(): 6.2e-119, 84.88% id in 344 aa; biotin synthase complement(3165062..3166099) Pectobacterium atrosepticum SCRI1043 2881983 YP_050917.1 CDS bioA NC_004547.2 3166195 3167499 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3166195..3167499 Pectobacterium atrosepticum SCRI1043 2881982 YP_050918.1 CDS celB NC_004547.2 3167776 3168570 D Similar to Pectobacterium carotovorum subsp. carotovorum beta(1,4)-glucan glucanohydrolase CelB SWALL:O31030 (EMBL:AF025769) (264 aa) fasta scores: E(): 1.1e-97, 91.66% id in 264 aa, and to Erwinia carotovora endoglucanase S precursor CelS SWALL:GUNS_ERWCA (SWALL:P16630) (264 aa) fasta scores: E(): 1.9e-93, 85.6% id in 264 aa; beta(1,4)-glucan glucanohydrolase 3167776..3168570 Pectobacterium atrosepticum SCRI1043 2882539 YP_050919.1 CDS ECA2828 NC_004547.2 3168781 3169188 D Similar to Yersinia pestis membrane protein ypo1514 SWALL:Q8ZG06 (EMBL:AJ414148) (135 aa) fasta scores: E(): 5.1e-33, 66.15% id in 130 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yohj or b2141 or c2673 or sf2226 SWALL:YOHJ_ECOLI (SWALL:P33372) (132 aa) fasta scores: E(): 4.3e-32, 64.84% id in 128 aa; hypothetical protein 3168781..3169188 Pectobacterium atrosepticum SCRI1043 2884998 YP_050920.1 CDS ECA2829 NC_004547.2 3169188 3169883 D Similar to Salmonella typhimurium, and Salmonella typhi transmembrane protein yohk or stm2182 or sty2412 SWALL:Q8XGP7 (EMBL:AE008797) (231 aa) fasta scores: E(): 2.5e-65, 80.17% id in 227 aa, and to Yersinia pestis membrane protein ypo1513 or y2655 SWALL:Q8ZG07 (EMBL:AJ414148) (231 aa) fasta scores: E(): 1e-63, 76.62% id in 231 aa; hypothetical protein 3169188..3169883 Pectobacterium atrosepticum SCRI1043 2884999 YP_050921.1 CDS cdd NC_004547.2 3170057 3170947 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 3170057..3170947 Pectobacterium atrosepticum SCRI1043 2881831 YP_050922.1 CDS sfcA NC_004547.2 3171157 3172854 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3171157..3172854 Pectobacterium atrosepticum SCRI1043 2884400 YP_050923.1 CDS ECA2832 NC_004547.2 3172911 3173816 R Similar to Salmonella typhimurium, and Salmonella typhi ABC transporter inner membrane component ylid or stm0851 or sty0890 SWALL:Q8XF88 (EMBL:AE008735) (303 aa) fasta scores: E(): 9.7e-95, 79.19% id in 298 aa, and to Shigella flexneri transport system permease protein ylid or sf0781.1 SWALL:AAN42416 (EMBL:AE015107) (303 aa) fasta scores: E(): 1.3e-94, 78.18% id in 298 aa; ABC transporter permease complement(3172911..3173816) Pectobacterium atrosepticum SCRI1043 2885000 YP_050924.1 CDS ECA2833 NC_004547.2 3173826 3174746 R Similar to Escherichia coli hypothetical ABC transporter permease protein ylic or b0831 SWALL:YLIC_ECOLI (SWALL:P75798) (306 aa) fasta scores: E(): 5.7e-103, 84.96% id in 306 aa, and to Salmonella typhi hypothetical ABC transporter permease protein ylic or sty0889 SWALL:Q8Z862 (EMBL:AL627268) (306 aa) fasta scores: E(): 1.2e-102, 84.96% id in 306 aa; ABC transporter permease complement(3173826..3174746) Pectobacterium atrosepticum SCRI1043 2884994 YP_050925.1 CDS ECA2834 NC_004547.2 3174856 3176400 R Similar to Salmonella typhimurium ABC transporter periplasmic binding protein ylib or stm0849 SWALL:Q8ZQM3 (EMBL:AE008735) (512 aa) fasta scores: E(): 1.1e-154, 75.93% id in 507 aa, and to Escherichia coli binding protein ylib precursor ylib or b0830 SWALL:YLIB_ECOLI (SWALL:P75797) (512 aa) fasta scores: E(): 1.6e-153, 76.33% id in 507 aa; ABC transporter periplasmic-binding protein complement(3174856..3176400) Pectobacterium atrosepticum SCRI1043 2884995 YP_050926.1 CDS ECA2835 NC_004547.2 3176426 3178327 R Similar to Ralstonia solanacearum probable ATP-binding ABC transporter protein rsc1379 or rs04662 SWALL:Q8XZL6 (EMBL:AL646064) (627 aa) fasta scores: E(): 2.8e-161, 72.28% id in 617 aa, and to Salmonella typhimurium ATPase components of ABC-type transport system, contain duplicated atpase domain ylia or stm0848 SWALL:Q8ZQM4 (EMBL:AE008735) (623 aa) fasta scores: E(): 4.3e-153, 70.18% id in 607 aa; ABC transporter ATP-binding protein complement(3176426..3178327) Pectobacterium atrosepticum SCRI1043 2884996 YP_050927.1 CDS moeA NC_004547.2 3178804 3180039 D is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA 3178804..3180039 Pectobacterium atrosepticum SCRI1043 2881227 YP_050928.1 CDS moeB NC_004547.2 3180042 3180794 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 3180042..3180794 Pectobacterium atrosepticum SCRI1043 2881228 YP_050929.1 CDS ECA2838 NC_004547.2 3180901 3181500 D Similar to Pseudomonas aeruginosa hypothetical protein Pa2575 SWALL:Q9I0R1 (EMBL:AE004686) (200 aa) fasta scores: E(): 8.3e-53, 66.16% id in 198 aa, and to Listeria innocua hypothetical protein Lin2962 SWALL:Q926S9 (EMBL:AL596174) (199 aa) fasta scores: E(): 2.7e-48, 64.82% id in 199 aa; hypothetical protein 3180901..3181500 Pectobacterium atrosepticum SCRI1043 2884997 YP_050930.1 CDS ECA2839 NC_004547.2 3181565 3182488 R similar to YegS from E. coli; lipid kinase complement(3181565..3182488) Pectobacterium atrosepticum SCRI1043 2884991 YP_050931.1 CDS ECA2840 NC_004547.2 3182764 3184236 D Similar to Shewanella oneidensis GGDEF domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2e-99, 51.03% id in 482 aa, and to Vibrio cholerae GGDEF family protein vc2224 SWALL:Q9KPY8 (EMBL:AE004294) (512 aa) fasta scores: E(): 2.3e-83, 45.97% id in 485 aa; hypothetical protein 3182764..3184236 Pectobacterium atrosepticum SCRI1043 2884992 YP_050932.1 CDS ECA2841 NC_004547.2 3184360 3185100 R Similar to Pseudomonas putida transcriptional regulator, GntR family pp2066 SWALL:AAN67680 (EMBL:AE016781) (254 aa) fasta scores: E(): 1.5e-32, 40.83% id in 240 aa, and to Streptomyces coelicolor GntR-family transcriptional regulator sco5231 or sc7e4.28C SWALL:Q9K492 (EMBL:AL939123) (254 aa) fasta scores: E(): 8.3e-10, 31.53% id in 241 aa; GntR family transcriptional regulator complement(3184360..3185100) Pectobacterium atrosepticum SCRI1043 2884993 YP_050933.1 CDS pcaB NC_004547.2 3185328 3186677 D Similar to Acinetobacter calcoaceticus 3-carboxy-cis,cis-muconate cycloisomerase PcaB SWALL:PCAB_ACICA (SWALL:Q59092) (452 aa) fasta scores: E(): 2.3e-62, 41.03% id in 446 aa, and to Bradyrhizobium japonicum pcab protein PcaB or bll7942 SWALL:BAC53207 (EMBL:AP005964) (453 aa) fasta scores: E(): 1.1e-126, 72.93% id in 447 aa; 3-carboxy-cis,cis-muconate cycloisomerase 3185328..3186677 Pectobacterium atrosepticum SCRI1043 2881429 YP_050934.1 CDS ECA2843 NC_004547.2 3186824 3188245 D Similar to Clostridium acetobutylicum 2-oxoglutarate/malate translocator cac1590 SWALL:Q97IQ0 (EMBL:AE007668) (476 aa) fasta scores: E(): 4.3e-79, 44.03% id in 461 aa, and to Bacillus subtilis YflS protein yflS SWALL:O34726 (EMBL:Z99108) (478 aa) fasta scores: E(): 3.1e-81, 42.46% id in 478 aa; sodium:sulfate symporter 3186824..3188245 Pectobacterium atrosepticum SCRI1043 2884988 YP_050935.1 CDS ECA2844 NC_004547.2 3188336 3188503 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yqae or b2666 or c3215 or z3965 or ecs3527 SWALL:YQAE_ECOLI (SWALL:P77240) (52 aa) fasta scores: E(): 8.5e-17, 82.69% id in 52 aa, and to Salmonella typhimurium, and Salmonella typhi yqae family transport protein yqae or stm2796 or sty2916 SWALL:Q8XF49 (EMBL:AE008827) (52 aa) fasta scores: E(): 6.7e-16, 82.35% id in 51 aa; hypothetical protein complement(3188336..3188503) Pectobacterium atrosepticum SCRI1043 2884989 YP_050936.1 CDS nosA NC_004547.2 3188704 3190713 R Similar to Pseudomonas stutzeri NosA protein precursor NosA SWALL:Q00620 (EMBL:M60717) (683 aa) fasta scores: E(): 9.3e-150, 57.39% id in 669 aa, and to Yersinia pestis membrane receptor protein ypo0164 or y3948 SWALL:Q8ZJE5 (EMBL:AJ414141) (686 aa) fasta scores: E(): 4.6e-177, 64.46% id in 667 aa; TonB dependent receptor complement(3188704..3190713) Pectobacterium atrosepticum SCRI1043 2882048 YP_050937.1 CDS ECA2846 NC_004547.2 3190822 3191298 R Similar to Pseudomonas aeruginosa hypothetical protein Pa3791 SWALL:Q9HXK6 (EMBL:AE004798) (153 aa) fasta scores: E(): 3.2, 27.51% id in 149 aa; hypothetical protein complement(3190822..3191298) Pectobacterium atrosepticum SCRI1043 2884990 YP_050938.1 CDS ECA2847 NC_004547.2 3191688 3191906 D Similar to Yersinia pestis hypothetical protein ypo2434 or y1902 SWALL:Q8ZDW4 (EMBL:AJ414152) (70 aa) fasta scores: E(): 4.7e-15, 67.14% id in 70 aa, and to Caulobacter crescentus hypothetical protein Cc0128 SWALL:Q9ABU2 (EMBL:AE005687) (66 aa) fasta scores: E(): 2.2e-05, 43.54% id in 62 aa; hypothetical protein 3191688..3191906 Pectobacterium atrosepticum SCRI1043 2884984 YP_050939.1 CDS ECA2848 NC_004547.2 3192250 3193197 R Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo0799 or y3187 SWALL:Q8ZHT5 (EMBL:AJ414144) (302 aa) fasta scores: E(): 1.6e-51, 45.81% id in 299 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0056 SWALL:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 2.2e-53, 46.33% id in 300 aa; LysR family transcriptional regulator complement(3192250..3193197) Pectobacterium atrosepticum SCRI1043 2884985 YP_050940.1 CDS ECA2849 NC_004547.2 3193309 3194337 D Similar to Xanthomonas maltophilia metallo-beta-lactamase precursor BlaS SWALL:Q9F238 (EMBL:AJ291672) (290 aa) fasta scores: E(): 9.3e-15, 29.24% id in 277 aa, and to Fluoribacter gormanii metallo-beta-lactamase Fez-1 protein blafez-1 SWALL:Q9K578 (EMBL:Y17896) (282 aa) fasta scores: E(): 7e-16, 29.04% id in 241 aa, and to Xanthomonas maltophilia metallo-beta-lactamase l1 precursor SWALL:BLA1_XANMA (SWALL:P52700) (290 aa) fasta scores: E(): 5.2e-14, 30.21% id in 235 aa; metallo-beta-lactamase 3193309..3194337 Pectobacterium atrosepticum SCRI1043 2884986 YP_050941.1 CDS mvpA NC_004547.2 3194782 3195210 R Similar to Shigella flexneri, and Shigella flexneri 2a stborf2 or MvpA SWALL:O06662 (EMBL:U82621) (132 aa) fasta scores: E(): 3e-33, 69.46% id in 131 aa, and to Rhizobium meliloti ntrr protein ntrr or ntrr1 or r02418 or smc01521 SWALL:Q9L380 (EMBL:AJ277847) (134 aa) fasta scores: E(): 8e-09, 39.25% id in 135 aa; plasmid protein complement(3194782..3195210) Pectobacterium atrosepticum SCRI1043 2885198 YP_050942.1 CDS mvpT NC_004547.2 3195210 3195440 R Similar to Shigella flexneri MvpT protein SWALL:CAC05863 (EMBL:AL391753) (75 aa) fasta scores: E(): 8e-18, 68.91% id in 74 aa, and to Salmonella dublin virulence-associated protein VagC SWALL:VAGC_SALDU (SWALL:Q05459) (76 aa) fasta scores: E(): 0.0048, 31.81% id in 66 aa; plasmid protein complement(3195210..3195440) Pectobacterium atrosepticum SCRI1043 2885199 YP_050943.1 CDS ECA2852 NC_004547.2 3195534 3196367 R Similar to Shigella flexneri 2a hypothetical 32.7 kDa protein SWALL:Q9AL39 (EMBL:AF200692) (280 aa) fasta scores: E(): 5.7e-66, 59.55% id in 272 aa, and to Escherichia coli Z1226 protein z1226 SWALL:CAD33792 (EMBL:AJ488511) (281 aa) fasta scores: E(): 8.4e-69, 62.59% id in 270 aa; hypothetical protein complement(3195534..3196367) Pectobacterium atrosepticum SCRI1043 2884987 YP_050944.1 CDS ECA2853 NC_004547.2 3196485 3196805 R Similar to Shigella flexneri 2a hypothetical 14.0 kDa protein SWALL:Q9AL42 (EMBL:AF200692) (125 aa) fasta scores: E(): 1.5e-21, 58.65% id in 104 aa, and to Escherichia coli hypothetical protein ykfi or b0245 SWALL:YKFI_ECOLI (SWALL:P77692) (113 aa) fasta scores: E(): 1.4e-29, 72.38% id in 105 aa; hypothetical protein complement(3196485..3196805) Pectobacterium atrosepticum SCRI1043 2884981 YP_050945.1 CDS ECA2854 NC_004547.2 3196875 3197252 R Similar to Shigella flexneri 2a hypothetical 13.8 kDa protein SWALL:Q9AL43 (EMBL:AF200692) (126 aa) fasta scores: E(): 8.4e-25, 64.76% id in 105 aa, and to Escherichia coli hypothetical protein yeeU SWALL:CAD42100 (EMBL:AJ494981) (122 aa) fasta scores: E(): 1.3e-24, 63.46% id in 104 aa; hypothetical protein complement(3196875..3197252) Pectobacterium atrosepticum SCRI1043 2884982 YP_050946.1 CDS ECA2855 NC_004547.2 3197249 3197722 R Similar to Shigella flexneri intergenic-region protein yees or sf2996 SWALL:AAN44477 (EMBL:AE015313) (163 aa) fasta scores: E(): 4.9e-27, 50.65% id in 152 aa, and to Escherichia coli intergenic-region protein SWALL:Q8VRA3 (EMBL:AF447814) (163 aa) fasta scores: E(): 5.7e-27, 50.65% id in 152 aa, and to Escherichia coli DNA repair protein RadC or b3638 SWALL:RADC_ECOLI (SWALL:P25531) (222 aa) fasta scores: E(): 5.6e-23, 47.51% id in 141 aa; hypothetical protein complement(3197249..3197722) Pectobacterium atrosepticum SCRI1043 2884983 YP_050947.1 CDS ECA2856 NC_004547.2 3197845 3198195 R Similar to Vibrio cholerae hypothetical protein Vc0505 SWALL:Q9KUL3 (EMBL:AE004136) (122 aa) fasta scores: E(): 0.42, 27.58% id in 116 aa, and to Helicobacter pylori hypothetical protein Hp0204 SWALL:O24996 (EMBL:AE000540) (127 aa) fasta scores: E(): 2.2, 32.18% id in 87 aa; hypothetical protein complement(3197845..3198195) Pectobacterium atrosepticum SCRI1043 2884977 YP_050948.1 CDS ECA2857 NC_004547.2 3198253 3199086 R hypothetical protein complement(3198253..3199086) Pectobacterium atrosepticum SCRI1043 2884978 YP_050949.1 CDS ECA2858 NC_004547.2 3199216 3199407 R hypothetical protein complement(3199216..3199407) Pectobacterium atrosepticum SCRI1043 2884979 YP_050950.1 CDS ECA2859 NC_004547.2 3199453 3199596 R hypothetical protein complement(3199453..3199596) Pectobacterium atrosepticum SCRI1043 2884980 YP_050951.1 CDS ECA2860 NC_004547.2 3199575 3200462 R Similar to Shigella flexneri 2a hypothetical 32.4 kDa protein SWALL:Q93F04 (EMBL:AF326777) (290 aa) fasta scores: E(): 3.4e-37, 43.43% id in 297 aa, and to Escherichia coli hypothetical 32.5 kDa protein SWALL:Q8RLA4 (EMBL:AY082443) (290 aa) fasta scores: E(): 2.6e-37, 43.43% id in 297 aa; hypothetical protein complement(3199575..3200462) Pectobacterium atrosepticum SCRI1043 2884974 YP_050952.1 CDS ECA2861 NC_004547.2 3200558 3201589 R hypothetical protein complement(3200558..3201589) Pectobacterium atrosepticum SCRI1043 2884975 YP_050953.1 CDS ECA2862 NC_004547.2 3202360 3202950 D Similar to Shigella flexneri 2a hypothetical 23.4 kDa protein SWALL:Q93F37 (EMBL:AF326777) (197 aa) fasta scores: E(): 2.1e-24, 38.58% id in 184 aa, and to Escherichia coli O6 conserved hypothetical protein c1171 SWALL:AAN79639 (EMBL:AE016758) (197 aa) fasta scores: E(): 1.8e-24, 38.91% id in 185 aa; hypothetical protein 3202360..3202950 Pectobacterium atrosepticum SCRI1043 2884976 YP_050954.1 CDS ECA2863 NC_004547.2 3203055 3203267 D Similar to Shigella flexneri orf, conserved hypothetical protein AlpA or sf2987 SWALL:AAN44468 (EMBL:AE015312) (68 aa) fasta scores: E(): 3.4e-18, 78.68% id in 61 aa, and to Escherichia coli O6 conserved hypothetical protein c0306 SWALL:Q8FKT9 (EMBL:AE016755) (68 aa) fasta scores: E(): 2.4e-18, 80.32% id in 61 aa; hypothetical protein 3203055..3203267 Pectobacterium atrosepticum SCRI1043 2883852 YP_050955.1 CDS ECA2864 NC_004547.2 3203360 3203785 D Similar to Shigella flexneri 2a hypothetical 19.8 kDa protein SWALL:Q93F12 (EMBL:AF326777) (173 aa) fasta scores: E(): 2.2e-16, 41.93% id in 124 aa, and to Escherichia coli O6 hypothetical protein c2498 SWALL:AAN80954 (EMBL:AE016762) (136 aa) fasta scores: E(): 1.8e-16, 41.93% id in 124 aa; hypothetical protein 3203360..3203785 Pectobacterium atrosepticum SCRI1043 2883853 YP_050956.1 CDS ECA2865 NC_004547.2 3203940 3204521 D Similar to Shigella flexneri 2a hypothetical 24.0 kDa protein SWALL:Q93F08 (EMBL:AF326777) (202 aa) fasta scores: E(): 6.2e-12, 31.84% id in 179 aa, and to Escherichia coli O6 hypothetical protein c0305 SWALL:AAN78793 (EMBL:AE016755) (202 aa) fasta scores: E(): 7.2e-12, 32.06% id in 184 aa; hypothetical protein 3203940..3204521 Pectobacterium atrosepticum SCRI1043 2883854 YP_050957.1 CDS ECA2866 NC_004547.2 3204842 3205360 D Similar to Yersinia pestis hypothetical protein ypo3708 or y0036 SWALL:Q8ZAT2 (EMBL:AJ414158) (172 aa) fasta scores: E(): 5.9e-59, 81.39% id in 172 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein z0266 or ecs0234 SWALL:O52671 (EMBL:AF044503) (172 aa) fasta scores: E(): 1.6e-56, 79.65% id in 172 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA3428 (95.349% identity in 172aa overlap) and ECA4275 (94.767% identity in 172aa overlap).; hypothetical protein 3204842..3205360 Pectobacterium atrosepticum SCRI1043 2883821 YP_050958.1 CDS vgrG NC_004547.2 3205452 3207311 D Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 2.8e-128, 53.96% id in 606 aa, and to Yersinia pestis RHS accessory genetic element ypo3606 or y0268 SWALL:Q8ZB23 (EMBL:AJ414158) (800 aa) fasta scores: E(): 1.7e-123, 51.18% id in 633 aa; RHS accessory genetic element 3205452..3207311 Pectobacterium atrosepticum SCRI1043 2882788 YP_050959.1 CDS ECA2868 NC_004547.2 3207340 3207783 D Similar to Photorhabdus luminescens Orf5 SWALL:AAN64197 (EMBL:AY144117) (139 aa) fasta scores: E(): 7.5e-27, 54.81% id in 135 aa, and to Escherichia coli O157:H7 hypothetical protein z0706 or ecs0606 SWALL:Q8XBY6 (EMBL:AE005236) (153 aa) fasta scores: E(): 9.4e-16, 39% id in 141 aa; hypothetical protein 3207340..3207783 Pectobacterium atrosepticum SCRI1043 2883822 YP_050960.1 CDS rhs NC_004547.2 3207776 3212035 D Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.1e-128, 41.64% id in 1395 aa, and to Ralstonia solanacearum RHS-related transmembrane protein rsp1137 or rs05482 SWALL:Q8XQT2 (EMBL:AL646083) (1517 aa) fasta scores: E(): 3e-74, 32.03% id in 1330 aa; RHS protein 3207776..3212035 Pectobacterium atrosepticum SCRI1043 2884684 YP_050961.1 CDS ECA2870 NC_004547.2 3212038 3212454 D hypothetical protein 3212038..3212454 Pectobacterium atrosepticum SCRI1043 2883823 YP_050962.1 CDS ECA2871 NC_004547.2 3212530 3212853 R Similar to Yersinia pestis hypothetical protein ypo3611 or y0263 SWALL:AAM83857 (EMBL:AJ414158) (63 aa) fasta scores: E(): 0.016, 51.35% id in 37 aa; hypothetical protein complement(3212530..3212853) Pectobacterium atrosepticum SCRI1043 2883824 YP_050963.1 CDS ECA2872 NC_004547.2 3213661 3215115 D Similar to Salmonella rubislaw flagellin FliC or FlaF or Hag SWALL:FLIC_SALRU (SWALL:P06175) (492 aa) fasta scores: E(): 6.3e-28, 34% id in 497 aa, and to Escherichia coli flagellin SWALL:Q93ES4 (EMBL:AF345848) (487 aa) fasta scores: E(): 1.9e-30, 34.86% id in 499 aa; flagellin 3213661..3215115 Pectobacterium atrosepticum SCRI1043 2883614 YP_050964.1 CDS ECA2873 NC_004547.2 3215245 3215712 D Similar to Salmonella typhimurium colanic acid capsular biosynthesis activation protein A RcsA or stm1982 SWALL:RCSA_SALTY (SWALL:P54698) (207 aa) fasta scores: E(): 1, 25.66% id in 113 aa, and to Citrobacter freundii transcriptional regulatory protein EcnR SWALL:ECNR_CITFR (SWALL:O69280) (199 aa) fasta scores: E(): 0.0024, 30.09% id in 103 aa; transcriptional regulator 3215245..3215712 Pectobacterium atrosepticum SCRI1043 2883615 YP_050965.1 CDS ECA2874 NC_004547.2 3216324 3217214 D Similar to Fusobacterium nucleatum hypothetical protein Fn0445 SWALL:Q8RG72 (EMBL:AE010556) (292 aa) fasta scores: E(): 1.3e-13, 27.55% id in 294 aa; hypothetical protein 3216324..3217214 Pectobacterium atrosepticum SCRI1043 2883616 YP_050966.1 CDS ECA2875 NC_004547.2 3217207 3220539 D ATP-binding protein 3217207..3220539 Pectobacterium atrosepticum SCRI1043 2883599 YP_050967.1 CDS ECA2876 NC_004547.2 3220532 3221371 D Similar to Xylella fastidiosa phage-related protein xf1763 SWALL:Q9PCL5 (EMBL:AE003998) (280 aa) fasta scores: E(): 7.8e-05, 26.69% id in 221 aa, and to Xanthomonas axonopodis phage-related protein orf84 or xac2285 SWALL:Q8PK90 (EMBL:AE011865) (320 aa) fasta scores: E(): 0.0092, 25.07% id in 327 aa; phage-like protein 3220532..3221371 Pectobacterium atrosepticum SCRI1043 2883600 YP_050968.1 CDS ECA2877 NC_004547.2 3221522 3223375 R hypothetical protein complement(3221522..3223375) Pectobacterium atrosepticum SCRI1043 2883601 YP_050969.1 CDS ECA2878 NC_004547.2 3223378 3225771 R Similar to the C-terminal regions of many including Pseudomonas aeruginosa sensor protein PilS or pa4546 SWALL:PILS_PSEAE (SWALL:P33639) (530 aa) fasta scores: E(): 2.3e-07, 27.48% id in 262 aa, and to Myxococcus xanthus AsgA asga476 SWALL:Q50853 (EMBL:U20214) (385 aa) fasta scores: E(): 1.1e-05, 27.9% id in 301 aa; signal transduction protein complement(3223378..3225771) Pectobacterium atrosepticum SCRI1043 2883602 YP_050970.1 CDS ECA2879 NC_004547.2 3226143 3227396 R Similar to Yersinia pestis prophage P4 integrase IntB or y0749 SWALL:AAM84336 (EMBL:AE013677) (431 aa) fasta scores: E(): 1.7e-120, 72.53% id in 415 aa, and to Shigella flexneri Int or sf2964 SWALL:AAN44445 (EMBL:AE015309) (420 aa) fasta scores: E(): 3.5e-112, 67.95% id in 415 aa; integrase complement(3226143..3227396) Pectobacterium atrosepticum SCRI1043 2883572 YP_050971.1 CDS pgsA NC_004547.2 3228035 3228583 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA or b1912 or c2325 or z3000 or ecs2650 SWALL:PGSA_ECOLI (SWALL:P06978) (181 aa) fasta scores: E(): 4.1e-57, 79.44% id in 180 aa; phosphatidylglycerophosphate synthetase complement(3228035..3228583) Pectobacterium atrosepticum SCRI1043 2884540 YP_050972.1 CDS uvrC NC_004547.2 3228642 3230474 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(3228642..3230474) Pectobacterium atrosepticum SCRI1043 2882766 YP_050973.1 CDS expA NC_004547.2 3230467 3231123 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(3230467..3231123) Pectobacterium atrosepticum SCRI1043 2884751 YP_050974.1 CDS ECA2883 NC_004547.2 3231768 3231992 D Similar to Yersinia pestis hypothetical protein Ypo1864 SWALL:Q8ZF54 (EMBL:AJ414150) (74 aa) fasta scores: E(): 2.3e-16, 67.56% id in 74 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yecf or stm1949 or sty2157 SWALL:Q8XEK4 (EMBL:AE008786) (74 aa) fasta scores: E(): 7.4e-16, 62.16% id in 74 aa; hypothetical protein 3231768..3231992 Pectobacterium atrosepticum SCRI1043 2883573 YP_050975.1 CDS ECA2884 NC_004547.2 3232086 3232373 R hypothetical protein complement(3232086..3232373) Pectobacterium atrosepticum SCRI1043 2883574 YP_050976.1 CDS cycA NC_004547.2 3233243 3234655 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 3233243..3234655 Pectobacterium atrosepticum SCRI1043 2883098 YP_050977.1 CDS ECA2886 NC_004547.2 3234825 3235091 R Similar to Escherichia fergusonii hypothetical protein YaiB SWALL:YAIB_ESCFE (SWALL:P28243) (86 aa) fasta scores: E(): 0.025, 38.59% id in 57 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yaib or stm0383 or sty0415 SWALL:Q8XG49 (EMBL:AE008713) (88 aa) fasta scores: E(): 0.04, 31.76% id in 85 aa; hypothetical protein complement(3234825..3235091) Pectobacterium atrosepticum SCRI1043 2883470 YP_050978.1 CDS ECA2887 NC_004547.2 3235088 3235258 R hypothetical protein complement(3235088..3235258) Pectobacterium atrosepticum SCRI1043 2883471 YP_050979.1 CDS nac NC_004547.2 3235472 >3235747 R Partial CDS. Similar to the N-terminal region of Escherichia coli nitrogen assimilation regulatory protein Nac or b1988 SWALL:NAC_ECOLI (SWALL:Q47005) (305 aa) fasta scores: E(): 1.4e-23, 77.77% id in 90 aa; nitrogen assimilation regulatory protein (partial) complement(3235472..>3235747) Pectobacterium atrosepticum SCRI1043 2885200 YP_050980.1 CDS intB NC_004547.2 3236381 3237667 D Similar to Yersinia pestis integrase IntB or ypo3438 SWALL:Q8ZBH6 (EMBL:AJ414157) (419 aa) fasta scores: E(): 6.6e-96, 56.5% id in 423 aa, and to Shigella flexneri integrase IntB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 3.7e-90, 57.46% id in 402 aa; integrase 3236381..3237667 Pectobacterium atrosepticum SCRI1043 2881466 YP_050981.1 CDS ECA2890 NC_004547.2 3237701 3238219 D hypothetical protein 3237701..3238219 Pectobacterium atrosepticum SCRI1043 2883472 YP_050982.1 CDS ECA2891 NC_004547.2 3238280 3239092 R Similar to Escherichia coli, and Salmonella typhimurium yebb protein yebb or ydjA SWALL:Q9JMR6 (EMBL:AP001918) (299 aa) fasta scores: E(): 6.9e-19, 42.69% id in 178 aa, and to Vibrio vulnificus predicted nucleotide-binding protein vv12473 SWALL:AAO10837 (EMBL:AE016805) (299 aa) fasta scores: E(): 7.4e-27, 48.2% id in 195 aa; hypothetical protein complement(3238280..3239092) Pectobacterium atrosepticum SCRI1043 2883439 YP_050983.1 CDS ECA2892 NC_004547.2 3239133 3239936 R Weakly similar to Deinococcus radiodurans hypothetical protein Dra0366 dra0366 SWALL:Q9RYF2 (EMBL:AE001863) (172 aa) fasta scores: E(): 3e-05, 39.62% id in 106 aa, and to Streptococcus mutans hypothetical protein smu.804 SWALL:AAN58522 (EMBL:AE014921) (404 aa) fasta scores: E(): 0.68, 26.45% id in 155 aa; hypothetical protein complement(3239133..3239936) Pectobacterium atrosepticum SCRI1043 2883440 YP_050984.1 CDS hns3 NC_004547.2 3241130 3241531 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 DNA-binding protein h-ns SWALL:HNS_ECOLI (SWALL:P08936) (136 aa) fasta scores: E(): 4.1e-23, 62.68% id in 134 aa, and to Erwinia chrysanthemi Hns regulatory protein hnS SWALL:O53007 (EMBL:X89444) (135 aa) fasta scores: E(): 3.1e-23, 63.15% id in 133 aa. Also similar to ECA1665 (87.970% id in 133 aa overlap) and to ECA2328 (62.406% id in 133 aa overlap); DNA-binding protein Hns 3241130..3241531 Pectobacterium atrosepticum SCRI1043 2881907 YP_050985.1 CDS ECA2894 NC_004547.2 3241658 3242011 R Similar to Escherichia coli O6 hypothetical protein c2396 SWALL:Q8FGI1 (EMBL:AE016762) (104 aa) fasta scores: E(): 1e-09, 48% id in 100 aa, and to Bacteroides nodosus mobilisation protein C MobC SWALL:Q9EXQ0 (EMBL:Y19120) (99 aa) fasta scores: E(): 2.5, 36.2% id in 58 aa; plasmid-like protein complement(3241658..3242011) Pectobacterium atrosepticum SCRI1043 2883441 YP_050986.1 CDS ECA2895 NC_004547.2 3242011 3242289 R hypothetical protein complement(3242011..3242289) Pectobacterium atrosepticum SCRI1043 2883442 YP_050987.1 CDS ECA2896 NC_004547.2 3242492 3242674 D Similar to Methanosarcina mazei conserved protein mm3163 SWALL:Q8PSB8 (EMBL:AE013574) (53 aa) fasta scores: E(): 4.5e-05, 44.44% id in 54 aa; hypothetical protein 3242492..3242674 Pectobacterium atrosepticum SCRI1043 2883166 YP_050988.1 CDS ECA2897 NC_004547.2 3242708 3242992 R Similar to Bradyrhizobium japonicum Bsl8315 protein bsl8315 SWALL:BAC53580 (EMBL:AP005965) (98 aa) fasta scores: E(): 5e-16, 53.26% id in 92 aa, and to Bradyrhizobium japonicum Bsr8247 protein bsr8247 SWALL:BAC53512 (EMBL:AP005965) (94 aa) fasta scores: E(): 5.3e-14, 49.43% id in 89 aa; hypothetical protein complement(3242708..3242992) Pectobacterium atrosepticum SCRI1043 2883167 YP_050989.1 CDS ECA2898 NC_004547.2 3243722 3245125 D Similar to Xanthomonas axonopodis plasmid mobilization protein MobL or xac3260 SWALL:Q8PHJ4 (EMBL:AE011971) (530 aa) fasta scores: E(): 4.1e-17, 32.84% id in 274 aa, and to Rhizobium loti probable conjugal transfer protein, TraA mll0964 SWALL:Q98LM6 (EMBL:AP002996) (1015 aa) fasta scores: E(): 1.6e-21, 36.1% id in 277 aa, and to Staphylococcus aureus orit nickase NeS neS SWALL:O87361 (EMBL:AF051917) (665 aa) fasta scores: E(): 2.4e-16, 33.99% id in 203 aa; plasmid mobilization protein 3243722..3245125 Pectobacterium atrosepticum SCRI1043 2883168 YP_050990.1 CDS ECA2899 NC_004547.2 3245208 3246110 D Weakly similar to Sulfolobus tokodaii hypothetical protein St0486 SWALL:Q975C2 (EMBL:AP000982) (268 aa) fasta scores: E(): 0.37, 28.5% id in 214 aa, and to Fusobacterium nucleatum magnesium and cobalt transport protein cora fn0332 SWALL:Q8RGG6 (EMBL:AE010545) (351 aa) fasta scores: E(): 3.3, 25.09% id in 263 aa; hypothetical protein 3245208..3246110 Pectobacterium atrosepticum SCRI1043 2883101 YP_050991.1 CDS ECA2900 NC_004547.2 3246456 3247238 R hypothetical protein complement(3246456..3247238) Pectobacterium atrosepticum SCRI1043 2883102 YP_050992.1 CDS ECA2901 NC_004547.2 3248045 3248488 D hypothetical protein 3248045..3248488 Pectobacterium atrosepticum SCRI1043 2883103 YP_050993.1 CDS ECA2902 NC_004547.2 3248552 3248980 D hypothetical protein 3248552..3248980 Pectobacterium atrosepticum SCRI1043 2883104 YP_050994.1 CDS ECA2903 NC_004547.2 3249069 3249716 R hypothetical protein complement(3249069..3249716) Pectobacterium atrosepticum SCRI1043 2883017 YP_050995.1 CDS ECA2904 NC_004547.2 3249733 3250287 R Similar to Escherichia coli O6 hypothetical protein c2401 SWALL:Q8FGH6 (EMBL:AE016762) (191 aa) fasta scores: E(): 1.1e-32, 51.63% id in 184 aa; lipoprotein complement(3249733..3250287) Pectobacterium atrosepticum SCRI1043 2883018 YP_050996.1 CDS ECA2905 NC_004547.2 3250922 3251299 D Similar to Escherichia coli O157:H7 z3937 protein z3937 or ecs3506 SWALL:Q8X978 (EMBL:AE005493) (131 aa) fasta scores: E(): 1.4e-16, 42.24% id in 116 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0042 pa0042 SWALL:Q9I790 (EMBL:AE004444) (131 aa) fasta scores: E(): 4.9, 27.64% id in 123 aa; hypothetical protein 3250922..3251299 Pectobacterium atrosepticum SCRI1043 2883019 YP_050997.1 CDS ECA2906 NC_004547.2 3251567 3252769 R Similar to Anabaena sp. hypothetical protein All3975 SWALL:Q8YQ60 (EMBL:AP003594) (403 aa) fasta scores: E(): 0.2, 22.5% id in 280 aa, and to Pseudomonas putida hypothetical protein pp2277 SWALL:AAN67890 (EMBL:AE016782) (461 aa) fasta scores: E(): 0.7, 22.09% id in 448 aa; hypothetical protein complement(3251567..3252769) Pectobacterium atrosepticum SCRI1043 2885629 YP_050998.1 CDS ECA2907 NC_004547.2 3253051 3253389 R hypothetical protein complement(3253051..3253389) Pectobacterium atrosepticum SCRI1043 2885630 YP_050999.1 CDS ECA2908 NC_004547.2 3253486 3254250 R Similar to Pseudoalteromonas sp. PS1M3 RePlication protein Rep SWALL:Q9LCJ6 (EMBL:AB022096) (193 aa) fasta scores: E(): 3.5e-11, 33.52% id in 173 aa, and to Zymomonas mobilis 20.9 kDa protein SWALL:21KD_ZYMMO (SWALL:P15256) (184 aa) fasta scores: E(): 1.8e-12, 32.55% id in 172 aa, and to Bacteroides fragilis RepA SWALL:Q45126 (EMBL:U30316) (226 aa) fasta scores: E(): 7.8e-09, 31.51% id in 165 aa; plasmid replication protein complement(3253486..3254250) Pectobacterium atrosepticum SCRI1043 2885631 YP_051000.1 CDS ECA2909 NC_004547.2 3255302 3255463 R hypothetical protein complement(3255302..3255463) Pectobacterium atrosepticum SCRI1043 2882846 YP_051001.1 CDS ECA2910 NC_004547.2 3255834 3256568 D Similar to Ruminobacter amylophilus replication protein Rep A SWALL:Q9ZN68 (EMBL:AB022866) (129 aa) fasta scores: E(): 0.00038, 31.68% id in 101 aa; plasmid replication protein 3255834..3256568 Pectobacterium atrosepticum SCRI1043 2882847 YP_051002.1 CDS ECA2911 NC_004547.2 3256754 3257866 R Similar to Corynebacterium efficiens transcription regulator ce1210 SWALL:BAC18020 (EMBL:AP005218) (378 aa) fasta scores: E(): 6.6e-43, 38.29% id in 376 aa, and to Neisseria meningitidis transcriptional regulator, hth_3 family nmb2012 SWALL:Q9JXJ6 (EMBL:AE002551) (363 aa) fasta scores: E(): 1.5e-30, 39.37% id in 353 aa; DNA-binding protein complement(3256754..3257866) Pectobacterium atrosepticum SCRI1043 2882848 YP_051003.1 CDS ECA2912 NC_004547.2 3257876 3258616 R Similar to Brucella suis replication protein RepB bra1203 SWALL:Q8FUL8 (EMBL:AE014612) (328 aa) fasta scores: E(): 3.7, 24.3% id in 251 aa; plasmid-like protein complement(3257876..3258616) Pectobacterium atrosepticum SCRI1043 2882849 YP_051004.1 CDS ECA2913 NC_004547.2 3258798 3259049 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA-binding protein StpA or HnsB or b2669 or z3968 or ecs3530 or sf2697 SWALL:STPA_ECOLI (SWALL:P30017) (134 aa) fasta scores: E(): 0.0029, 42.18% id in 64 aa, and to Escherichia coli O6 hypothetical protein c2413 SWALL:Q8FGG4 (EMBL:AE016762) (80 aa) fasta scores: E(): 2.7e-18, 78.2% id in 78 aa; DNA-binding protein complement(3258798..3259049) Pectobacterium atrosepticum SCRI1043 2882747 YP_051005.1 CDS ECA2914 NC_004547.2 3259117 3259467 R hypothetical protein complement(3259117..3259467) Pectobacterium atrosepticum SCRI1043 2882748 YP_051006.1 CDS ECA2915 NC_004547.2 3259507 3259770 R hypothetical protein complement(3259507..3259770) Pectobacterium atrosepticum SCRI1043 2882749 YP_051007.1 CDS ECA2916 NC_004547.2 3259824 3260120 R hypothetical protein complement(3259824..3260120) Pectobacterium atrosepticum SCRI1043 2885488 YP_051008.1 CDS ECA2917 NC_004547.2 3260200 3260514 R hypothetical protein complement(3260200..3260514) Pectobacterium atrosepticum SCRI1043 2885489 YP_051009.1 CDS ECA2918 NC_004547.2 3260547 3260765 R Similar to Bacteriophage P4 hypothetical 9.7 kDa protein SWALL:Y9K_BPP4 (SWALL:P12552) (88 aa) fasta scores: E(): 5.4e-05, 42.3% id in 52 aa, and to Yersinia pseudotuberculosis DNA-binding protein SWALL:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 1.5e-06, 45.45% id in 55 aa; phage-like protein complement(3260547..3260765) Pectobacterium atrosepticum SCRI1043 2885490 YP_051010.1 CDS ECA2919 NC_004547.2 3260915 3261778 R Similar to Salmonella typhi hypothetical protein t0869 SWALL:AAO68551 (EMBL:AE016837) (287 aa) fasta scores: E(): 8.5e-72, 70% id in 280 aa; hypothetical protein complement(3260915..3261778) Pectobacterium atrosepticum SCRI1043 2885491 YP_051011.1 CDS ECA2920 NC_004547.2 3261771 3261941 R hypothetical protein complement(3261771..3261941) Pectobacterium atrosepticum SCRI1043 2882314 YP_051012.1 CDS ECA2921 NC_004547.2 3262080 3263492 R hypothetical protein complement(3262080..3263492) Pectobacterium atrosepticum SCRI1043 2882315 YP_051013.1 CDS ECA2922 NC_004547.2 3264767 3265660 R Similar to Escherichia coli hypothetical transcriptional regulator ycjz or b1328 SWALL:YCJZ_ECOLI (SWALL:P77333) (299 aa) fasta scores: E(): 1e-73, 66.21% id in 296 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein blr5548 SWALL:BAC50813 (EMBL:AP005955) (297 aa) fasta scores: E(): 1.3e-54, 54.39% id in 296 aa; LysR family transcriptional regulator complement(3264767..3265660) Pectobacterium atrosepticum SCRI1043 2882316 YP_051014.1 CDS ECA2923 NC_004547.2 3265816 3266967 D Similar to Escherichia coli O157:H7 oxidoreductase z0369 or ecs0331 SWALL:Q8X6H2 (EMBL:AE005207) (380 aa) fasta scores: E(): 1.5e-79, 58.44% id in 373 aa, and to Oceanobacillus iheyensis NADH-dependent flavin oxidoreductase ob3315 SWALL:BAC15271 (EMBL:AP004604) (373 aa) fasta scores: E(): 3.6e-62, 47.97% id in 371 aa; NADH:flavin oxidoreductase 3265816..3266967 Pectobacterium atrosepticum SCRI1043 2882452 YP_051015.1 CDS ECA2924 NC_004547.2 3267167 3267820 D lipoprotein 3267167..3267820 Pectobacterium atrosepticum SCRI1043 2882453 YP_051016.1 CDS ECA2925 NC_004547.2 3268214 3268972 D Similar to Ralstonia solanacearum probable dehydrogenase/reductase oxidoreductase protein rsc2597 or rs00845 SWALL:Q8XW78 (EMBL:AL646070) (252 aa) fasta scores: E(): 1.8e-81, 88.09% id in 252 aa, and to Bradyrhizobium japonicum Blr4183 protein blr4183 SWALL:BAC49448 (EMBL:AP005950) (254 aa) fasta scores: E(): 5e-42, 49.18% id in 246 aa; short chain dehydrogenase 3268214..3268972 Pectobacterium atrosepticum SCRI1043 2882454 YP_051017.1 CDS ECA2926 NC_004547.2 <3269020 3269145 D Partial CDS. Similar to the N-terminal region of Ralstonia solanacearum probable glutathione-s-transferase protein rsc2594 or rs00842 SWALL:Q8XW81 (EMBL:AL646070) (224 aa) fasta scores: E(): 0.00015, 69.44% id in 36 aa, and to Rhizobium meliloti glutathione s-transferase protein gst3 or r00303 or smc00383 SWALL:Q92SR2 (EMBL:AL591783) (228 aa) fasta scores: E(): 0.012, 57.14% id in 35 aa; glutathione-S-transferase (partial) <3269020..3269145 Pectobacterium atrosepticum SCRI1043 2885468 YP_051018.1 CDS ECA2927 NC_004547.2 3269197 3270420 R Similar to Escherichia coli bicyclomycin resistance protein Bcr or BicA or BicR or Sur or SuxA or b2182 SWALL:BCR_ECOLI (SWALL:P28246) (396 aa) fasta scores: E(): 2.1e-29, 30.52% id in 380 aa, and to Pseudomonas putida multidrug resistance transporter, bcr/cfla family pp3304 SWALL:AAN68911 (EMBL:AE016786) (412 aa) fasta scores: E(): 3.5e-93, 65.33% id in 401 aa; transporter complement(3269197..3270420) Pectobacterium atrosepticum SCRI1043 2885469 YP_051019.1 CDS ECA2928 NC_004547.2 3270545 3271834 R FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase complement(3270545..3271834) Pectobacterium atrosepticum SCRI1043 2885470 YP_051020.1 CDS ECA2929 NC_004547.2 3271911 3275000 R Similar to Pseudomonas putida rnd efflux transporter pp3302 SWALL:AAN68909 (EMBL:AE016786) (1030 aa) fasta scores: E(): 0, 84.11% id in 1020 aa, and to Xylella fastidiosa cation efflux system protein xf2083 SWALL:Q9PBQ7 (EMBL:AE004023) (1020 aa) fasta scores: E(): 0, 83.38% id in 1017 aa; efflux protein complement(3271911..3275000) Pectobacterium atrosepticum SCRI1043 2885471 YP_051021.1 CDS ECA2930 NC_004547.2 3274997 3276106 R Similar to Pseudomonas putida RND efflux membrane fusion protein pp3301 SWALL:AAN68908 (EMBL:AE016786) (367 aa) fasta scores: E(): 2.8e-81, 70.1% id in 368 aa, and to Xylella fastidiosa component of multidrug efflux system xf2084 SWALL:Q9PBQ6 (EMBL:AE004023) (368 aa) fasta scores: E(): 3.9e-75, 63.95% id in 369 aa; HlyD family secretion protein complement(3274997..3276106) Pectobacterium atrosepticum SCRI1043 2881499 YP_051022.1 CDS ECA2931 NC_004547.2 3276183 3276797 R Similar to Pseudomonas putida transcriptional regulator, TetR family pp3300 SWALL:AAN68907 (EMBL:AE016786) (204 aa) fasta scores: E(): 4.3e-53, 65.19% id in 204 aa, and to Xylella fastidiosa transcriptional regulator xf2085 SWALL:Q9PBQ5 (EMBL:AE004024) (205 aa) fasta scores: E(): 1.8e-50, 64.87% id in 205 aa; TetR family transcriptional regulator complement(3276183..3276797) Pectobacterium atrosepticum SCRI1043 2881500 YP_051023.1 CDS ECA2932 NC_004547.2 3276884 3278356 D Similar to Ralstonia solanacearum drug efflux lipoprotein rsc3208 or rs02424 SWALL:Q8XUI0 (EMBL:AL646074) (486 aa) fasta scores: E(): 4e-119, 69.19% id in 487 aa, and to Xanthomonas campestris outer membrane protein oprn or xcc0419 SWALL:Q8PDC1 (EMBL:AE012139) (490 aa) fasta scores: E(): 9.1e-110, 65.09% id in 487 aa; outer membrane efflux lipoprotein 3276884..3278356 Pectobacterium atrosepticum SCRI1043 2881501 YP_051024.1 CDS ECA2933 NC_004547.2 3278435 3279220 D Similar to Agrobacterium tumefaciens short-chain dehydrogenase atu4220 or agr_l_1280 SWALL:Q8U879 (EMBL:AE009351) (291 aa) fasta scores: E(): 8.4e-41, 46.8% id in 250 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase pa0658 SWALL:Q9I5R3 (EMBL:AE004500) (266 aa) fasta scores: E(): 8.5e-26, 37.3% id in 252 aa; short-chain dehydrogenase 3278435..3279220 Pectobacterium atrosepticum SCRI1043 2881680 YP_051025.1 CDS ECA2934 NC_004547.2 3279353 3279733 R Similar to Rhizobium loti hypothetical protein Mll3985 SWALL:Q98F15 (EMBL:AP003003) (137 aa) fasta scores: E(): 3e-18, 51.32% id in 113 aa, and to Xanthomonas campestris hypothetical protein Xcc0062 SWALL:Q8PEB9 (EMBL:AE012100) (116 aa) fasta scores: E(): 1.5e-16, 49.51% id in 103 aa; transcriptional regulator complement(3279353..3279733) Pectobacterium atrosepticum SCRI1043 2881681 YP_051026.1 CDS ECA2935 NC_004547.2 3279845 3280585 D Similar to Xanthomonas campestris hypothetical protein Xcc1216 SWALL:Q8PBA7 (EMBL:AE012221) (244 aa) fasta scores: E(): 8.1e-40, 50.4% id in 248 aa, and to Streptomyces coelicolor hypothetical protein sco5465 or sc3d11.22 SWALL:Q9L1E0 (EMBL:AL939123) (220 aa) fasta scores: E(): 8.7e-33, 45.57% id in 226 aa; hypothetical protein 3279845..3280585 Pectobacterium atrosepticum SCRI1043 2881682 YP_051027.1 CDS nifQ NC_004547.2 3280604 3281122 R Similar to Pantoea agglomerans NifQ protein NifQ SWALL:Q52074 (EMBL:X99694) (171 aa) fasta scores: E(): 1.7e-37, 59.64% id in 171 aa, and to Klebsiella pneumoniae NifQ protein NifQ SWALL:NIFQ_KLEPN (SWALL:P10392) (167 aa) fasta scores: E(): 1.8e-33, 58.08% id in 167 aa; nitrogen fixation protein complement(3280604..3281122) Pectobacterium atrosepticum SCRI1043 2882068 YP_051028.1 CDS nifB NC_004547.2 3281119 3282525 R Similar to Klebsiella pneumoniae femo cofactor biosynthesis protein NifB SWALL:NIFB_KLEPN (SWALL:P10390) (468 aa) fasta scores: E(): 8.2e-132, 70.08% id in 468 aa, and to Pantoea agglomerans NifB protein NifB SWALL:Q57037 (EMBL:X99694) (465 aa) fasta scores: E(): 1e-124, 69.02% id in 452 aa; femo cofactor biosynthesis protein complement(3281119..3282525) Pectobacterium atrosepticum SCRI1043 2882410 YP_051029.1 CDS nifA NC_004547.2 3282703 3284277 R Similar to Klebsiella pneumoniae nif-specific regulatory protein NifA SWALL:NIFA_KLEPN (SWALL:P03027) (524 aa) fasta scores: E(): 3.2e-156, 77.37% id in 526 aa, and to Enterobacter agglomerans nif-specific regulatory protein NifA SWALL:NIFA_ENTAG (SWALL:P54930) (518 aa) fasta scores: E(): 4.3e-144, 71.59% id in 528 aa; nif-specific regulatory protein complement(3282703..3284277) Pectobacterium atrosepticum SCRI1043 2882409 YP_051030.1 CDS nifL NC_004547.2 3284274 3285761 R Similar to Klebsiella pneumoniae nitrogen fixation regulatory protein NifL SWALL:NIFL_KLEPN (SWALL:P06772) (495 aa) fasta scores: E(): 2e-130, 66.46% id in 495 aa, and to Pantoea agglomerans NifL protein NifL SWALL:Q57340 (EMBL:X99694) (495 aa) fasta scores: E(): 5.8e-122, 61.21% id in 495 aa; nitrogen fixation regulatory protein complement(3284274..3285761) Pectobacterium atrosepticum SCRI1043 2882065 YP_051031.1 CDS nifF NC_004547.2 3286145 3286675 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 3286145..3286675 Pectobacterium atrosepticum SCRI1043 2881930 YP_051032.1 CDS nifM NC_004547.2 3286909 3287706 R Similar to Klebsiella pneumoniae protein NifM SWALL:NIFM_KLEPN (SWALL:P08534) (266 aa) fasta scores: E(): 2.1e-38, 43.82% id in 267 aa, and to Pantoea agglomerans NifM protein NifM SWALL:Q52073 (EMBL:X99694) (264 aa) fasta scores: E(): 7.7e-36, 40.54% id in 259 aa; nitrogen fixation protein complement(3286909..3287706) Pectobacterium atrosepticum SCRI1043 2882066 YP_051033.1 CDS nifZ NC_004547.2 3287706 3288149 R Similar to Klebsiella pneumoniae NifZ protein NifZ SWALL:NIFZ_KLEPN (SWALL:P08533) (148 aa) fasta scores: E(): 3.6e-33, 57.24% id in 145 aa, and to Pantoea agglomerans NifZ protein NifZ SWALL:Q52072 (EMBL:X99694) (147 aa) fasta scores: E(): 5.6e-30, 56.55% id in 145 aa; nitrogen fixation protein complement(3287706..3288149) Pectobacterium atrosepticum SCRI1043 2881751 YP_051034.1 CDS nifW NC_004547.2 3288146 3288403 R Similar to Klebsiella pneumoniae nitrogenase stabilizing/protective protein NifW SWALL:NIFW_KLEPN (SWALL:P09137) (86 aa) fasta scores: E(): 4.7e-19, 70.13% id in 77 aa, and to Enterobacter agglomerans nitrogenase stabilizing/protective protein NifW SWALL:NIFW_ENTAG (SWALL:Q52071) (112 aa) fasta scores: E(): 2.5e-12, 53.84% id in 78 aa; nitrogenase stabilizing/protective protein complement(3288146..3288403) Pectobacterium atrosepticum SCRI1043 2881730 YP_051035.1 CDS nifV NC_004547.2 3288372 3289547 R Similar to Klebsiella pneumoniae homocitrate synthase NifV SWALL:NIFV_KLEPN (SWALL:P05345) (381 aa) fasta scores: E(): 1.8e-100, 68.94% id in 380 aa, and to Enterobacter agglomerans homocitrate synthase NifV SWALL:NIFV_ENTAG (SWALL:Q52070) (400 aa) fasta scores: E(): 1.6e-95, 68.4% id in 364 aa; homocitrate synthase complement(3288372..3289547) Pectobacterium atrosepticum SCRI1043 2881729 YP_051036.1 CDS nifS NC_004547.2 3289561 3290769 R Similar to Enterobacter agglomerans cysteine desulfurase NifS SWALL:NIFS_ENTAG (SWALL:Q52069) (401 aa) fasta scores: E(): 2.6e-129, 80.09% id in 402 aa, and to Klebsiella pneumoniae cysteine desulfurase NifS SWALL:NIFS_KLEPN (SWALL:P05344) (397 aa) fasta scores: E(): 4.3e-120, 75.37% id in 402 aa; cysteine desulfurase complement(3289561..3290769) Pectobacterium atrosepticum SCRI1043 2881738 YP_051037.1 CDS nifU NC_004547.2 3290800 3291639 R Similar to Klebsiella pneumoniae nitrogen fixation protein NifU SWALL:NIFU_KLEPN (SWALL:P05343) (274 aa) fasta scores: E(): 3e-88, 81% id in 279 aa, and to Pantoea agglomerans NifU protein NifU SWALL:Q52068 (EMBL:X99694) (275 aa) fasta scores: E(): 8.2e-84, 77.25% id in 277 aa; nitrogen fixation protein complement(3290800..3291639) Pectobacterium atrosepticum SCRI1043 2881740 YP_051038.1 CDS nifX NC_004547.2 3291866 3292333 R Similar to Pantoea agglomerans NifX protein NifX SWALL:Q52066 (EMBL:X99694) (154 aa) fasta scores: E(): 1.1e-37, 61.84% id in 152 aa, and to Klebsiella pneumoniae NifX protein NifX SWALL:NIFX_KLEPN (SWALL:P09136) (156 aa) fasta scores: E(): 2.9e-36, 62.74% id in 153 aa; nitrogen fixation protein complement(3291866..3292333) Pectobacterium atrosepticum SCRI1043 2881731 YP_051039.1 CDS nifN NC_004547.2 3292320 3293705 R functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN complement(3292320..3293705) Pectobacterium atrosepticum SCRI1043 2882067 YP_051040.1 CDS nifE NC_004547.2 3293715 3295088 R Similar to Klebsiella pneumoniae nitrogenase iron-molybdenum cofactor biosynthesis protein NifE SWALL:NIFE_KLEPN (SWALL:P08737) (457 aa) fasta scores: E(): 1.9e-156, 86.62% id in 456 aa, and to Pantoea agglomerans NifE protein NifE SWALL:Q52064 (EMBL:X99694) (457 aa) fasta scores: E(): 7.8e-147, 80.04% id in 456 aa; nitrogenase iron-molybdenum cofactor biosynthesis protein complement(3293715..3295088) Pectobacterium atrosepticum SCRI1043 2881929 YP_051041.1 CDS ECA2950 NC_004547.2 3295378 3295986 R Similar to Xanthomonas campestris transcriptional regulator xcc0044 SWALL:Q8PED7 (EMBL:AE012097) (189 aa) fasta scores: E(): 7.7e-20, 49.6% id in 125 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2484 SWALL:Q9I0Z8 (EMBL:AE004676) (204 aa) fasta scores: E(): 5.9e-19, 36.68% id in 199 aa; TetR family transcriptional regulator complement(3295378..3295986) Pectobacterium atrosepticum SCRI1043 2881683 YP_051042.1 CDS ECA2951 NC_004547.2 3296146 3297336 D Similar to Pseudomonas syringae major facilitator family transporter pspto3068 SWALL:AAO56557 (EMBL:AE016867) (375 aa) fasta scores: E(): 1.1e-88, 65.14% id in 373 aa, and to Pseudomonas aeruginosa probable mfs transporter pa2314 SWALL:Q9I1G1 (EMBL:AE004657) (417 aa) fasta scores: E(): 2.6e-73, 54.02% id in 385 aa; transporter 3296146..3297336 Pectobacterium atrosepticum SCRI1043 2881691 YP_051043.1 CDS nifY NC_004547.2 3297654 3298316 R Similar to Klebsiella pneumoniae NifY protein NifY SWALL:NIFY_KLEPN (SWALL:P09135) (229 aa) fasta scores: E(): 2e-52, 60.76% id in 209 aa, and to Pantoea agglomerans NifY protein NifY SWALL:Q52063 (EMBL:X99694) (224 aa) fasta scores: E(): 4.9e-51, 58.22% id in 225 aa; nitrogen fixation protein complement(3297654..3298316) Pectobacterium atrosepticum SCRI1043 2881750 YP_051044.1 CDS nifT NC_004547.2 3298330 3298548 R Similar to Klebsiella pneumoniae NifT protein NifT SWALL:NIFT_KLEPN (SWALL:P09134) (72 aa) fasta scores: E(): 5e-18, 66.66% id in 72 aa, and to Pantoea agglomerans NifT protein NifT SWALL:Q52062 (EMBL:X99694) (71 aa) fasta scores: E(): 6.3e-17, 63.38% id in 71 aa; nitrogen fixation protein complement(3298330..3298548) Pectobacterium atrosepticum SCRI1043 2881739 YP_051045.1 CDS nifK NC_004547.2 3298621 3300189 R Similar to Klebsiella pneumoniae nitrogenase molybdenum-iron protein beta chain NifK SWALL:NIFK_KLEPN (SWALL:P09772) (520 aa) fasta scores: E(): 1.7e-185, 83.14% id in 522 aa, and to Pseudomonas stutzeri A15 mo nitrogenase subunit NifK SWALL:Q93JU9 (EMBL:AJ313205) (523 aa) fasta scores: E(): 3e-152, 68.26% id in 523 aa; nitrogenase molybdenum-iron protein subunit beta complement(3298621..3300189) Pectobacterium atrosepticum SCRI1043 2882508 YP_051046.1 CDS nifD NC_004547.2 3300248 3301696 R Similar to Klebsiella pneumoniae nitrogenase molybdenum-iron protein alpha chain NifD SWALL:NIFD_KLEPN (SWALL:P00466) (483 aa) fasta scores: E(): 2.2e-176, 87.96% id in 482 aa, and to Azotobacter vinelandii nitrogenase molybdenum-iron protein alpha chain NifD SWALL:NIFD_AZOVI (SWALL:P07328) (491 aa) fasta scores: E(): 5e-151, 73.84% id in 478 aa; nitrogenase molybdenum-iron protein subunit alpha complement(3300248..3301696) Pectobacterium atrosepticum SCRI1043 2881928 YP_051047.1 CDS nifH NC_004547.2 3301757 3302638 R Similar to Klebsiella pneumoniae nitrogenase iron protein NifH SWALL:NIFH_KLEPN (SWALL:P00458) (292 aa) fasta scores: E(): 3.2e-104, 94.84% id in 291 aa, and to Azotobacter chroococcum mcd 1 nitrogenase iron protein 1 NifH1 or NifH SWALL:NIH1_AZOCH (SWALL:P26248) (291 aa) fasta scores: E(): 1.4e-96, 87.24% id in 290 aa; nitrogenase iron protein complement(3301757..3302638) Pectobacterium atrosepticum SCRI1043 2882506 YP_051048.1 CDS nifJ NC_004547.2 3303128 3306640 D Similar to Klebsiella pneumoniae pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_KLEPN (SWALL:P03833) (1171 aa) fasta scores: E(): 0, 78.27% id in 1169 aa, and to Enterobacter agglomerans pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_ENTAG (SWALL:P19543) (1173 aa) fasta scores: E(): 0, 73.34% id in 1178 aa. Also similar to ECA0824 (NifJ) (47.377% id. in 1182 aa overlap); pyruvate-flavodoxin oxidoreductase 3303128..3306640 Pectobacterium atrosepticum SCRI1043 2882507 YP_051049.1 CDS ECA2958 NC_004547.2 3306810 3308309 D Similar to Corynebacterium efficiens transport protein ce2200 SWALL:BAC19010 (EMBL:AP005221) (555 aa) fasta scores: E(): 1e-89, 51.49% id in 503 aa, and to Micrococcus sp. 28 integral membrane transporter SWALL:Q8VPP9 (EMBL:AY034092) (515 aa) fasta scores: E(): 2.1e-94, 51.19% id in 502 aa; sulfate transporter 3306810..3308309 Pectobacterium atrosepticum SCRI1043 2881692 YP_051050.1 CDS ECA2959 NC_004547.2 3308676 3308993 D hypothetical protein 3308676..3308993 Pectobacterium atrosepticum SCRI1043 2881693 YP_051051.1 CDS ECA2960 NC_004547.2 3309242 3310237 R Similar to Rhizobium loti probable peptide ABC transporter ATP-binding abc transporter protein msi192 SWALL:Q8KJF3 (EMBL:AL672113) (335 aa) fasta scores: E(): 1.6e-55, 52.81% id in 320 aa, and to Bacillus halodurans oligopeptide ABC transporter appd or bh0350 SWALL:Q9KFX0 (EMBL:AP001508) (329 aa) fasta scores: E(): 6.5e-57, 53.53% id in 325 aa; ABC transporter ATP-binding protein complement(3309242..3310237) Pectobacterium atrosepticum SCRI1043 2881338 YP_051052.1 CDS ECA2961 NC_004547.2 3310240 3311103 R Similar to Brucella abortus ABC transporter permease protein c batn1953.orf22 SWALL:Q8VQK5 (EMBL:AF454951) (296 aa) fasta scores: E(): 6.2e-46, 43.86% id in 269 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3267 or agr_l_3102 SWALL:Q8UAV0 (EMBL:AE009256) (291 aa) fasta scores: E(): 3.6e-45, 44.44% id in 270 aa; ABC transporter permease complement(3310240..3311103) Pectobacterium atrosepticum SCRI1043 2881339 YP_051053.1 CDS ECA2962 NC_004547.2 3311105 3312061 R Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3268 or agr_l_3101 SWALL:Q8UAU9 (EMBL:AE009256) (313 aa) fasta scores: E(): 1.6e-50, 47.72% id in 308 aa, and to Bradyrhizobium japonicum ABC transporter permease protein blr3342 SWALL:BAC48607 (EMBL:AP005947) (313 aa) fasta scores: E(): 6.3e-50, 47.07% id in 308 aa; ABC transporter permease complement(3311105..3312061) Pectobacterium atrosepticum SCRI1043 2881340 YP_051054.1 CDS ECA2963 NC_004547.2 3312074 3313639 R Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3269 or agr_l_3099 SWALL:Q8UAU8 (EMBL:AE009256) (517 aa) fasta scores: E(): 1.6e-43, 31.66% id in 518 aa, and to Bradyrhizobium japonicum ABC transporter peptide-binding protein blr0308 SWALL:BAC45573 (EMBL:AP005936) (518 aa) fasta scores: E(): 7.8e-41, 30.42% id in 516 aa; ABC transporter substrate binding protein complement(3312074..3313639) Pectobacterium atrosepticum SCRI1043 2882041 YP_051055.1 CDS ECA2964 NC_004547.2 3313691 3314908 R Similar to Oceanobacillus iheyensis hypothetical conserved protein ob3166 SWALL:Q8ELQ3 (EMBL:AP004603) (399 aa) fasta scores: E(): 7.7e-81, 58.91% id in 387 aa, and to Staphylococcus aureus HmrA protein HmrA or mw2057 SWALL:Q8NVF8 (EMBL:AP004829) (394 aa) fasta scores: E(): 1.8e-61, 46.68% id in 392 aa; peptidase complement(3313691..3314908) Pectobacterium atrosepticum SCRI1043 2882042 YP_051056.1 CDS ECA2965 NC_004547.2 3315479 3316660 D Similar to Streptomyces coelicolor isomerase sco3475 or sce65.11c or sce56.11C SWALL:Q9RKG2 (EMBL:AL939116) (377 aa) fasta scores: E(): 1.1e-43, 39.08% id in 394 aa, and to Oceanobacillus iheyensis hypothetical protein ob2215 SWALL:BAC14171 (EMBL:AP004600) (382 aa) fasta scores: E(): 6.9e-41, 36.36% id in 396 aa; mandelate racemase/muconate lactonizing protein 3315479..3316660 Pectobacterium atrosepticum SCRI1043 2882043 YP_051057.1 CDS ECA2966 NC_004547.2 3317025 3317858 D Similar to Bradyrhizobium japonicum ABC transporter substrate-binding protein blr8117 SWALL:BAC53382 (EMBL:AP005964) (284 aa) fasta scores: E(): 1.5e-26, 34.84% id in 264 aa, and to Streptococcus pneumoniae ABC transporter substrate-binding protein-glutamine-binding protein GlnH or spr1251 SWALL:AAL00055 (EMBL:AE008497) (271 aa) fasta scores: E(): 3.2e-13, 28.93% id in 273 aa; extracellular solute-binding protein 3317025..3317858 Pectobacterium atrosepticum SCRI1043 2882044 YP_051058.1 CDS ECA2967 NC_004547.2 3317894 3319309 R Similar to Bradyrhizobium japonicum Bll6362 protein Bll6362 SWALL:BAC51627 (EMBL:AP005958) (477 aa) fasta scores: E(): 4.9e-07, 26.58% id in 459 aa, and to Rhizobium loti hypothetical protein Mll9010 SWALL:Q982L5 (EMBL:AP003015) (457 aa) fasta scores: E(): 5.4e-07, 26.48% id in 438 aa; dehydratase complement(3317894..3319309) Pectobacterium atrosepticum SCRI1043 2881566 YP_051059.1 CDS ECA2968 NC_004547.2 3319656 3320333 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glutamine transport system permease protein glnp glnp or b0810 or c0895 or z1032 or ecs0888 or sf0761 SWALL:GLNP_ECOLI (SWALL:P10345) (219 aa) fasta scores: E(): 1.3e-22, 38.46% id in 221 aa, and to Bradyrhizobium japonicum ABC transporter permease protein blr8118 SWALL:BAC53383 (EMBL:AP005964) (220 aa) fasta scores: E(): 3.9e-29, 40.18% id in 219 aa; ABC transporter permease 3319656..3320333 Pectobacterium atrosepticum SCRI1043 2881567 YP_051060.1 CDS ECA2969 NC_004547.2 3320342 3321007 D Similar to Bradyrhizobium japonicum ABC transporter permease protein blr8118 SWALL:BAC53383 (EMBL:AP005964) (220 aa) fasta scores: E(): 9.4e-32, 44.29% id in 219 aa, and to Bacillus halodurans ABC transporter bh1462 SWALL:Q9KCV7 (EMBL:AP001512) (218 aa) fasta scores: E(): 1.4e-28, 40.74% id in 216 aa; ABC transporter permease 3320342..3321007 Pectobacterium atrosepticum SCRI1043 2881568 YP_051061.1 CDS ECA2970 NC_004547.2 3321031 3321861 D Similar to Corynebacterium efficiens amino acid ABC transporter ATP-binding protein ce1443 SWALL:BAC18253 (EMBL:AP005218) (254 aa) fasta scores: E(): 1.1e-43, 57.32% id in 239 aa, and to Streptomyces coelicolor ATP-binding protein atrc or sco5258 or 2sc7g11.20C SWALL:Q9F3K7 (EMBL:AL939123) (253 aa) fasta scores: E(): 1.6e-43, 55.02% id in 249 aa; ABC transporter ATP-binding protein 3321031..3321861 Pectobacterium atrosepticum SCRI1043 2885302 YP_051062.1 CDS ECA2971 NC_004547.2 3321890 3322807 D Similar to Listeria monocytogenes D-alanine aminotransferase Dat or DaaA or lmo1619 SWALL:DAAA_LISMO (SWALL:O85046) (289 aa) fasta scores: E(): 2.2e-24, 35.21% id in 284 aa, and to Methanopyrus kandleri branched-chain amino acid aminotransferase ilve or mk1627 SWALL:Q8TUX5 (EMBL:AE010451) (295 aa) fasta scores: E(): 6.5e-30, 34.05% id in 276 aa; branched-chain amino acid aminotransferase 3321890..3322807 Pectobacterium atrosepticum SCRI1043 2885303 YP_051063.1 CDS ECA2972 NC_004547.2 3322879 3324231 R Similar to Pseudomonas putida hydrolase, alpha/beta fold family pp4540 SWALL:AAN70113 (EMBL:AE016791) (270 aa) fasta scores: E(): 1e-14, 27.92% id in 265 aa, and to Vibrio vulnificus predicted hydrolase or acyltransferase vv10627 SWALL:AAO09141 (EMBL:AE016799) (272 aa) fasta scores: E(): 1.4e-14, 29% id in 262 aa; hydrolase complement(3322879..3324231) Pectobacterium atrosepticum SCRI1043 2885304 YP_051064.1 CDS ECA2973 NC_004547.2 3324257 3325147 D Similar to Rhizobium meliloti transcription regulator protein r02971 or smc03122 SWALL:Q92LQ9 (EMBL:AL591792) (315 aa) fasta scores: E(): 2.5e-28, 35.31% id in 286 aa, and to Brucella suis transcriptional regulator, LysR family bra0952 SWALL:AAN34123 (EMBL:AE014588) (304 aa) fasta scores: E(): 2e-27, 31.29% id in 294 aa; LysR family transcriptional regulator 3324257..3325147 Pectobacterium atrosepticum SCRI1043 2885305 YP_051065.1 CDS ECA2974 NC_004547.2 3325375 3325824 D Similar to Escherichia coli mutator MutT protein MutT or b0099 SWALL:MUTT_ECOLI (SWALL:P08337) (129 aa) fasta scores: E(): 7.6e-05, 27.04% id in 122 aa, and to Agrobacterium tumefaciens MutT like protein atu1834 or agr_c_3368 SWALL:Q8UEC6 (EMBL:AE009138) (147 aa) fasta scores: E(): 4.4e-08, 31.49% id in 127 aa; MutT-like protein 3325375..3325824 Pectobacterium atrosepticum SCRI1043 2885313 YP_051066.1 CDS ECA2975 NC_004547.2 3325954 3326604 R Similar to unidentified bacterium hypothetical 22.4 kDa protein SWALL:Q93DV2 (EMBL:AF378538) (199 aa) fasta scores: E(): 1.2e-17, 35.67% id in 199 aa, and to Deinococcus radiodurans hypothetical protein Dr0445 SWALL:Q9RX70 (EMBL:AE001904) (191 aa) fasta scores: E(): 2.9e-17, 37.85% id in 177 aa; hypothetical protein complement(3325954..3326604) Pectobacterium atrosepticum SCRI1043 2885314 YP_051067.1 CDS ECA2976 NC_004547.2 3326722 3327630 R Similar to Pseudomonas fluorescens transcriptional regulator SWALL:AAN32873 (EMBL:AF461725) (238 aa) fasta scores: E(): 7.6e-57, 61.34% id in 238 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0448 SWALL:Q9I670 (EMBL:AE004482) (302 aa) fasta scores: E(): 2.4e-41, 39.86% id in 301 aa. Also similar to ECA1602 (96.026% id. in 302 aa overlap); LysR family transcriptional regulator complement(3326722..3327630) Pectobacterium atrosepticum SCRI1043 2885315 YP_051068.1 CDS ECA2977 NC_004547.2 3327796 3328329 D Similar to Pseudomonas fluorescens hypothetical protein SWALL:AAN32872 (EMBL:AF461725) (79 aa) fasta scores: E(): 1.6e-14, 59.42% id in 69 aa, and to Bradyrhizobium japonicum Blr3308 protein blr3308 SWALL:BAC48573 (EMBL:AP005947) (105 aa) fasta scores: E(): 0.04, 31.34% id in 67 aa; hypothetical protein 3327796..3328329 Pectobacterium atrosepticum SCRI1043 2885805 YP_051069.1 CDS ECA2978 NC_004547.2 3328334 3328660 D hypothetical protein 3328334..3328660 Pectobacterium atrosepticum SCRI1043 2885806 YP_051070.1 CDS ECA2979 NC_004547.2 3328674 3329513 D Similar to Pseudomonas sp. WBC-3 methyl parathion hydrolase mpD SWALL:Q841S6 (EMBL:AY251554) (331 aa) fasta scores: E(): 2.6e-22, 31.57% id in 285 aa, and to Plesiomonas sp. DLL-1 methyl parathion degrading protein SWALL:Q93SP1 (EMBL:AY029773) (341 aa) fasta scores: E(): 2.6e-22, 31.57% id in 285 aa; hydrolase 3328674..3329513 Pectobacterium atrosepticum SCRI1043 2885807 YP_051071.1 CDS ECA2980 NC_004547.2 3329725 3330060 R hypothetical protein complement(3329725..3330060) Pectobacterium atrosepticum SCRI1043 2885109 YP_051072.1 CDS ECA2981 NC_004547.2 3330105 3332162 D Similar to Leptospira interrogans conserved hypothetical protein lb047 SWALL:AAN51606 (EMBL:AE011593) (440 aa) fasta scores: E(): 1.7e-05, 23.3% id in 339 aa, and to Shewanella oneidensis hypothetical protein so1002 SWALL:AAN54075 (EMBL:AE015544) (770 aa) fasta scores: E(): 5.4e-05, 25.16% id in 445 aa; hypothetical protein 3330105..3332162 Pectobacterium atrosepticum SCRI1043 2885110 YP_051073.1 CDS emrE NC_004547.2 3332182 3332514 D member of the small MDR (multidrug resistance) family of transporters; in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin; proton-dependent secondary transporter which exchanges protons for compound translocation; multidrug efflux protein 3332182..3332514 Pectobacterium atrosepticum SCRI1043 2885126 YP_051074.1 CDS ECA2983 NC_004547.2 3332535 3332705 D hypothetical protein 3332535..3332705 Pectobacterium atrosepticum SCRI1043 2885111 YP_051075.1 CDS xenA NC_004547.2 3332713 3333801 R Similar to Pseudomonas putida xenobiotic reductase a XenA SWALL:Q9R9V9 (EMBL:AF154061) (363 aa) fasta scores: E(): 2.4e-114, 75.96% id in 362 aa, and to Xanthomonas campestris xenobiotic flavin oxidoreductase a frp or xcc1170 SWALL:Q8PBF2 (EMBL:AE012216) (366 aa) fasta scores: E(): 2.5e-104, 70.44% id in 362 aa; flavoprotein xenobiotic reductase complement(3332713..3333801) Pectobacterium atrosepticum SCRI1043 2882652 YP_051076.1 CDS ECA2985 NC_004547.2 3333853 3334194 D Similar to Pseudomonas putida transcriptional regulator, ArsR family pp1253 SWALL:AAN66877 (EMBL:AE016778) (111 aa) fasta scores: E(): 1.1e-24, 65% id in 100 aa, and to Anabaena sp. transcriptional regulator alr1867 SWALL:Q8YVV6 (EMBL:AP003587) (112 aa) fasta scores: E(): 3.3e-16, 50.49% id in 101 aa; transcriptional regulator ArsR 3333853..3334194 Pectobacterium atrosepticum SCRI1043 2885112 YP_051077.1 CDS ECA2986 NC_004547.2 3334274 3334795 D Similar to Klebsiella oxytoca e-2/e-2' protein SWALL:Q9ZFE7 (EMBL:AF102514) (179 aa) fasta scores: E(): 5.4e-29, 47.61% id in 168 aa, and to Pseudomonas aeruginosa probable oxidase pa1684 SWALL:Q9I341 (EMBL:AE004595) (181 aa) fasta scores: E(): 5.4e-33, 50.88% id in 169 aa; oxidase 3334274..3334795 Pectobacterium atrosepticum SCRI1043 2885174 YP_051078.1 CDS ECA2987 NC_004547.2 3334880 3335344 D Similar to Escherichia coli hypothetical protein yehs or b2124 SWALL:YEHS_ECOLI (SWALL:P33355) (156 aa) fasta scores: E(): 1.4e-37, 62.82% id in 156 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yehs or stm2157 or sty2387 SWALL:Q8XEY4 (EMBL:AE008796) (155 aa) fasta scores: E(): 1e-36, 64% id in 150 aa; hypothetical protein 3334880..3335344 Pectobacterium atrosepticum SCRI1043 2885175 YP_051079.1 CDS ECA2988 NC_004547.2 3335434 >3335667 R Similar to the C-terminal region of many including Salmonella typhimurium inner membrane protein stm4518 SWALL:Q8ZJZ4 (EMBL:AE008912) (171 aa) fasta scores: E(): 0.0011, 36.61% id in 71 aa, and to Escherichia coli, and Salmonella typhimurium ydga protein ydga or ygdB SWALL:Q9Z4C7 (EMBL:AB021078) (313 aa) fasta scores: E(): 6.5e-07, 49.25% id in 67 aa, and to Photorhabdus luminescens truncated transposase SWALL:Q937N5 (EMBL:AF346497) (79 aa) fasta scores: E(): 0.069, 36% id in 75 aa; hypothetical protein complement(3335434..>3335667) Pectobacterium atrosepticum SCRI1043 2885176 YP_051080.1 CDS nirE NC_004547.2 3335911 3336744 R Similar to Paracoccus denitrificans uroporphyrin-III C-methyltransferase NirE SWALL:NIRE_PARDE (SWALL:Q51701) (287 aa) fasta scores: E(): 2.3e-41, 49.6% id in 256 aa, and to Vibrio cholerae uroporphyrin-III C-methyltransferase vc2561 SWALL:Q9KP18 (EMBL:AE004324) (299 aa) fasta scores: E(): 1.6e-48, 58.15% id in 239 aa; uroporphyrin-III C-methyltransferase complement(3335911..3336744) Pectobacterium atrosepticum SCRI1043 2881282 YP_051081.1 CDS nasA NC_004547.2 3336770 3339478 R Similar to Klebsiella pneumoniae nitrate reductase NasA SWALL:NASA_KLEPN (SWALL:Q06457) (866 aa) fasta scores: E(): 3.4e-170, 56.46% id in 882 aa, and to Agrobacterium tumefaciens nitrate reductase large subunit NasA or atu3900 or agr_l_1895 SWALL:Q8U930 (EMBL:AE009320) (903 aa) fasta scores: E(): 9e-163, 53.77% id in 887 aa; nitrate reductase complement(3336770..3339478) Pectobacterium atrosepticum SCRI1043 2882974 YP_051082.1 CDS nasB NC_004547.2 3339475 3343662 R Similar to Klebsiella pneumoniae nitrite reductase [NAD(P)H] large subunit NasB SWALL:NIRB_KLEPN (SWALL:Q06458) (957 aa) fasta scores: E(): 0, 70.89% id in 962 aa; nitrite reductase [NAD(P)H] large subunit complement(3339475..3343662) Pectobacterium atrosepticum SCRI1043 2882975 YP_051083.1 CDS nasD NC_004547.2 3343682 3344476 R Similar to Klebsiella pneumoniae nitrate transport protein NasD SWALL:NASD_KLEPN (SWALL:P39459) (262 aa) fasta scores: E(): 2.8e-80, 83.46% id in 260 aa; nitrate transport protein complement(3343682..3344476) Pectobacterium atrosepticum SCRI1043 2882976 YP_051084.1 CDS nasE NC_004547.2 3344487 3345329 R Similar to Klebsiella oxytoca nitrate transporter component nasE SWALL:O32709 (EMBL:L27431) (294 aa) fasta scores: E(): 1.9e-78, 74.03% id in 285 aa; nitrate transporter permease complement(3344487..3345329) Pectobacterium atrosepticum SCRI1043 2882967 YP_051085.1 CDS nasF NC_004547.2 3345414 3346676 R Similar to Klebsiella oxytoca nitrate transporter component nasF SWALL:Q48466 (EMBL:L27431) (418 aa) fasta scores: E(): 3.4e-118, 65.85% id in 410 aa; nitrate-binding proteint complement(3345414..3346676) Pectobacterium atrosepticum SCRI1043 2882968 YP_051086.1 CDS nasR NC_004547.2 3347618 3348907 R Similar to Klebsiella pneumoniae nitrate regulatory protein nasR SWALL:Q48468 (EMBL:L27824) (396 aa) fasta scores: E(): 2.5e-28, 35.11% id in 430 aa; nitrate-and nitrite-responsive positive regulator complement(3347618..3348907) Pectobacterium atrosepticum SCRI1043 2882969 YP_051087.1 CDS ECA2996 NC_004547.2 3349209 3351068 D Similar to Pectobacterium carotovorum subsp. carotovorum tail fiber SWALL:Q9KW53 (EMBL:AB045036) (632 aa) fasta scores: E(): 2.3e-64, 45.92% id in 577 aa, and to Salmonella typhi bacteriophage tail fiber protein sty1637 SWALL:Q8Z6S9 (EMBL:AL627270) (341 aa) fasta scores: E(): 3.1e-26, 47.36% id in 209 aa; bacteriophage tail fiber protein 3349209..3351068 Pectobacterium atrosepticum SCRI1043 2885788 YP_051088.1 CDS ECA2997 NC_004547.2 3351068 3351610 D Similar to Escherichia coli tail fiber assembly protein homolog T SWALL:TFAB_ECOLI (SWALL:Q47427) (203 aa) fasta scores: E(): 1.6e-18, 42.2% id in 154 aa, and to Bacteriophage HK97 gp29 tfA SWALL:Q9MCR5 (EMBL:AF069529) (202 aa) fasta scores: E(): 7.9e-19, 43.79% id in 153 aa; bacteriophage tail fiber assembly protein 3351068..3351610 Pectobacterium atrosepticum SCRI1043 2885789 YP_051089.1 CDS cydA2 NC_004547.2 3352107 3353684 D Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome D ubiquinol oxidase subunit I CydA or Cyd-1 or b0733 or c0811 or sf0564 SWALL:CYDA_ECOLI (SWALL:P11026) (522 aa) fasta scores: E(): 1.2e-172, 80.15% id in 524 aa; cytochrome d ubiquinol oxidase subunit I 3352107..3353684 Pectobacterium atrosepticum SCRI1043 2883100 YP_051090.1 CDS cydB2 NC_004547.2 3353699 3354838 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome D ubiquinol oxidase subunit II CydB or Cyd-2 or b0734 or c0812 or z0901 or ecs0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 1.3e-106, 69.12% id in 379 aa; cytochrome D ubiquinol oxidase subunit II 3353699..3354838 Pectobacterium atrosepticum SCRI1043 2883051 YP_051091.1 CDS ECA3000 NC_004547.2 3355116 3355481 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yidh yidh or b3676 or c4600 or z5171 or ecs4617 or sf3786 SWALL:YIDH_ECOLI (SWALL:P31445) (115 aa) fasta scores: E(): 1e-17, 51.4% id in 107 aa, and to Salmonella typhimurium inner membrane protein yidh or stm3805 SWALL:Q8ZL05 (EMBL:AE008877) (115 aa) fasta scores: E(): 1.9e-17, 50.46% id in 107 aa; hypothetical protein 3355116..3355481 Pectobacterium atrosepticum SCRI1043 2885790 YP_051092.1 CDS ECA3001 NC_004547.2 3355485 3355811 D Similar to Mycobacterium tuberculosis hypothetical protein rv2273 or mt2334 or mtcy339.37C SWALL:YM73_MYCTU (SWALL:Q50690) (109 aa) fasta scores: E(): 0.017, 33.66% id in 101 aa, and to Corynebacterium glutamicum hypothetical membrane protein Cgl0104 SWALL:Q8NU43 (EMBL:AP005274) (105 aa) fasta scores: E(): 0.32, 22.68% id in 97 aa; hypothetical protein 3355485..3355811 Pectobacterium atrosepticum SCRI1043 2885791 YP_051093.1 CDS fdhE NC_004547.2 3355865 3356794 R required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE complement(3355865..3356794) Pectobacterium atrosepticum SCRI1043 2883036 YP_051094.1 CDS ECA3004 NC_004547.2 3357067 3358506 R Similar to Yersinia pestis multi modular, transcriptional regulator, also ATP-binding component of a transport system y2350 SWALL:AAM85908 (EMBL:AE013837) (482 aa) fasta scores: E(): 4.4e-116, 63.02% id in 476 aa, and to Escherichia coli hypothetical protein ydcr or b1439 SWALL:YDCR_ECOLI (SWALL:P77730) (468 aa) fasta scores: E(): 5e-114, 62.23% id in 474 aa; GntR family transcriptional regulator complement(3357067..3358506) Pectobacterium atrosepticum SCRI1043 2885783 YP_051095.1 CDS ECA3005 NC_004547.2 3358615 3359337 R Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase complement(3358615..3359337) Pectobacterium atrosepticum SCRI1043 2885784 YP_051096.1 CDS ECA3006 NC_004547.2 3359576 3360058 R Similar to Yersinia pestis membrane protein ypo1652 or y1815 SWALL:Q8ZFP2 (EMBL:AJ414149) (177 aa) fasta scores: E(): 4.5e-28, 47.74% id in 155 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ylac or b0458 or z0570 or ecs0511 or sf0403 SWALL:AAN42059 (EMBL:AE000152) (169 aa) fasta scores: E(): 5.7e-20, 40.88% id in 159 aa; hypothetical protein complement(3359576..3360058) Pectobacterium atrosepticum SCRI1043 2885785 YP_051097.1 CDS ECA3007 NC_004547.2 3360233 3360862 R Similar to Escherichia coli O157:H7 orf, hypothetical protein chuy or z4917 or ecs4385 SWALL:Q8X5N4 (EMBL:AE005576) (207 aa) fasta scores: E(): 2.1e-40, 56.79% id in 206 aa, and to Shigella dysenteriae hypothetical 21.8 kDa protein shuY SWALL:O70016 (EMBL:U64516) (207 aa) fasta scores: E(): 4.4e-40, 57.28% id in 206 aa; hypothetical protein complement(3360233..3360862) Pectobacterium atrosepticum SCRI1043 2884869 YP_051098.1 CDS ECA3008 NC_004547.2 3360859 3361359 R Similar to Escherichia coli O6 hypothetical protein chux or c4315 SWALL:AAN82751 (EMBL:AE016768) (164 aa) fasta scores: E(): 1.6e-42, 65% id in 160 aa, and to Shigella dysenteriae hypothetical 18.4 kDa protein shuX SWALL:O70017 (EMBL:U64516) (164 aa) fasta scores: E(): 5.1e-41, 63.75% id in 160 aa; hypothetical protein complement(3360859..3361359) Pectobacterium atrosepticum SCRI1043 2884870 YP_051099.1 CDS ECA3009 NC_004547.2 3361374 3362687 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(3361374..3362687) Pectobacterium atrosepticum SCRI1043 2884871 YP_051100.1 CDS ECA3010 NC_004547.2 3363084 3364676 R Similar to Yersinia pestis ABC transporter ATP-binding protein ypo1491 SWALL:Q8ZG28 (EMBL:AJ414148) (531 aa) fasta scores: E(): 2.3e-170, 92.45% id in 530 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein ybit or b0820 or c0906 or z1042 or ecs0897 SWALL:YBIT_ECOLI (SWALL:P75790) (530 aa) fasta scores: E(): 1.1e-163, 87.54% id in 530 aa; ABC transporter ATP-binding protein complement(3363084..3364676) Pectobacterium atrosepticum SCRI1043 2884839 YP_051101.1 CDS pab NC_004547.2 3364794 3365690 D Similar to Erwinia chrysanthemi antibiotic biosynthesis protein Pab SWALL:Q93KB5 (EMBL:AJ310612) (293 aa) fasta scores: E(): 3e-67, 58.24% id in 297 aa, and to Xanthomonas axonopodis hypothetical protein Xac2912 xac2912 SWALL:Q8PII5 (EMBL:AE011933) (292 aa) fasta scores: E(): 1.2e-34, 39.59% id in 298 aa; hypothetical protein 3364794..3365690 Pectobacterium atrosepticum SCRI1043 2885411 YP_051102.1 CDS ECA3012 NC_004547.2 3365704 3366279 D Similar to Escherichia coli ribosomal-protein-serine acetyltransferase RimL or b1427 SWALL:RIML_ECOLI (SWALL:P13857) (179 aa) fasta scores: E(): 3.6e-16, 38.88% id in 162 aa, and to Shigella flexneri acetylation of N-terminal serine of 30S ribosomal subunit protein l7, acetyl transferase RimL or sf1783 SWALL:AAN43352 (EMBL:AE015198) (183 aa) fasta scores: E(): 9.1e-18, 38.98% id in 177 aa; acetyltransferase 3365704..3366279 Pectobacterium atrosepticum SCRI1043 2884840 YP_051103.1 CDS treB NC_004547.2 3366849 3368273 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunit IIBC 3366849..3368273 Pectobacterium atrosepticum SCRI1043 2884250 YP_051104.1 CDS treC NC_004547.2 3368339 3370030 D Similar to Escherichia coli trehalose-6-phosphate hydrolase TreC or OlgH or b4239 SWALL:TREC_ECOLI (SWALL:P28904) (551 aa) fasta scores: E(): 1.1e-171, 70.05% id in 551 aa; trehalose-6-phosphate hydrolase 3368339..3370030 Pectobacterium atrosepticum SCRI1043 2884251 YP_051105.1 CDS ECA3015 NC_004547.2 3370188 3370499 R Similar to Salmonella typhimurium, and Salmonella typhi inner membrane protein ElaB or stm2311 or sty2542 SWALL:Q8XF60 (EMBL:AE008803) (103 aa) fasta scores: E(): 1e-19, 68.42% id in 95 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ElaB protein ElaB or b2266 or c2810 or z3526 or ecs3154 SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E(): 3.3e-19, 65.26% id in 95 aa; hypothetical protein complement(3370188..3370499) Pectobacterium atrosepticum SCRI1043 2884841 YP_051106.1 CDS nuoN NC_004547.2 3370688 3372145 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(3370688..3372145) Pectobacterium atrosepticum SCRI1043 2883977 YP_051107.1 CDS nuoM NC_004547.2 3372152 3373687 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(3372152..3373687) Pectobacterium atrosepticum SCRI1043 2883976 YP_051108.1 CDS nuoL NC_004547.2 3373788 3375638 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(3373788..3375638) Pectobacterium atrosepticum SCRI1043 2883975 YP_051109.1 CDS nuoK NC_004547.2 3375635 3375937 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(3375635..3375937) Pectobacterium atrosepticum SCRI1043 2884007 YP_051110.1 CDS nuoJ NC_004547.2 3375934 3376497 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(3375934..3376497) Pectobacterium atrosepticum SCRI1043 2884006 YP_051111.1 CDS nuoI NC_004547.2 3376507 3377049 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(3376507..3377049) Pectobacterium atrosepticum SCRI1043 2884005 YP_051112.1 CDS nuoH NC_004547.2 3377067 3378041 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(3377067..3378041) Pectobacterium atrosepticum SCRI1043 2884004 YP_051113.1 CDS nuoG NC_004547.2 3378038 3380764 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(3378038..3380764) Pectobacterium atrosepticum SCRI1043 2884938 YP_051114.1 CDS nuoF NC_004547.2 3380952 3382301 R shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F complement(3380952..3382301) Pectobacterium atrosepticum SCRI1043 2884937 YP_051115.1 CDS nuoE NC_004547.2 3382298 3382843 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(3382298..3382843) Pectobacterium atrosepticum SCRI1043 2884936 YP_051116.1 CDS nuoC NC_004547.2 3382846 3384645 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(3382846..3384645) Pectobacterium atrosepticum SCRI1043 2884705 YP_051117.1 CDS nuoB NC_004547.2 3384744 3385418 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(3384744..3385418) Pectobacterium atrosepticum SCRI1043 2884704 YP_051118.1 CDS nuoA NC_004547.2 3385436 3385876 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(3385436..3385876) Pectobacterium atrosepticum SCRI1043 2884703 YP_051119.1 CDS ECA3029 NC_004547.2 3386178 3386327 D Similar to Vibrio cholerae hypothetical protein Vc2680 SWALL:Q9KNQ1 (EMBL:AE004333) (47 aa) fasta scores: E(): 7, 44.44% id in 27 aa. Also identical to ECA3031; hypothetical protein 3386178..3386327 Pectobacterium atrosepticum SCRI1043 2884842 YP_051120.1 CDS hexA1 NC_004547.2 3386554 3387504 R Previously sequenced in Pectobacterium carotovorum subsp. atrosepticum as HexA SWALL:O85276 (EMBL:AF057064) (316 aa) fasta scores: E(): 4.1e-120, 99.68% id in 316 aa, and similar to Erwinia chrysanthemi pectinase gene transcriptional regulator PecT SWALL:PECT_ERWCH (SWALL:P52662) (316 aa) fasta scores: E(): 6.8e-95, 79.36% id in 315 aa. Also identical to ECA3032; LysR family transcriptional regulator complement(3386554..3387504) Pectobacterium atrosepticum SCRI1043 2882432 YP_051121.1 CDS ECA3031 NC_004547.2 3387665 3387814 D Similar to Vibrio cholerae hypothetical protein Vc2680 SWALL:Q9KNQ1 (EMBL:AE004333) (47 aa) fasta scores: E(): 7, 44.44% id in 27 aa. Also identical to ECA3029; hypothetical protein 3387665..3387814 Pectobacterium atrosepticum SCRI1043 2884723 YP_051122.1 CDS hexA2 NC_004547.2 3388041 3388991 R Previously sequenced in Pectobacterium carotovorum subsp. atrosepticum as HexA SWALL:O85276 (EMBL:AF057064) (316 aa) fasta scores: E(): 4.1e-120, 99.68% id in 316 aa, and similar to Erwinia chrysanthemi pectinase gene transcriptional regulator PecT SWALL:PECT_ERWCH (SWALL:P52662) (316 aa) fasta scores: E(): 6.8e-95, 79.36% id in 315 aa. Also identical to ECA3030; LysR family transcriptional regulator complement(3388041..3388991) Pectobacterium atrosepticum SCRI1043 2882433 YP_051123.1 CDS ECA3033 NC_004547.2 3389494 3390708 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase 3389494..3390708 Pectobacterium atrosepticum SCRI1043 2884724 YP_051124.1 CDS ECA3034 NC_004547.2 3390849 3391448 D Similar to Yersinia pestis hypothetical protein ypo2559/y1627 ypo2559 or y1627 SWALL:YP59_YERPE (SWALL:Q8ZDK3) (197 aa) fasta scores: E(): 9.8e-62, 85.56% id in 194 aa, and to Photorhabdus temperata b2291 SWALL:AAN08356 (EMBL:AY137386) (199 aa) fasta scores: E(): 4.2e-61, 83.33% id in 198 aa; hypothetical protein 3390849..3391448 Pectobacterium atrosepticum SCRI1043 2884725 YP_051125.1 CDS ECA3035 NC_004547.2 3391478 3393361 R Similar to Yersinia pestis ion transport protein ypo2561 SWALL:Q8ZDK1 (EMBL:AJ414152) (610 aa) fasta scores: E(): 1e-192, 80.65% id in 610 aa, and to Photorhabdus temperata YfbS SWALL:AAN08357 (EMBL:AY137386) (585 aa) fasta scores: E(): 5.6e-181, 78.63% id in 585 aa; sodium/sulfate transporter complement(3391478..3393361) Pectobacterium atrosepticum SCRI1043 2884805 YP_051126.2 CDS ECA3036 NC_004547.2 3393489 3394145 R Similar to Yersinia pestis haloacid dehalogenase-like hydrolase ypo2562 or y1625 SWALL:AAM85194 (EMBL:AJ414152) (220 aa) fasta scores: E(): 1.3e-56, 69.9% id in 216 aa, and to Shigella flexneri phosphatase yfbt or sf2369 SWALL:AAN43882 (EMBL:AE015253) (216 aa) fasta scores: E(): 1.4e-55, 68.83% id in 215 aa; phosphatase complement(3393489..3394145) Pectobacterium atrosepticum SCRI1043 2884806 YP_051127.1 CDS ECA3037 NC_004547.2 3394166 3394660 R Similar to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yfbu or stm2335 or sty2565 SWALL:Q8XGJ0 (EMBL:AE008805) (164 aa) fasta scores: E(): 4.1e-58, 87.19% id in 164 aa, and to Yersinia pestis hypothetical protein Ypo2563 SWALL:Q8ZDJ9 (EMBL:AJ414152) (164 aa) fasta scores: E(): 8.8e-58, 82.92% id in 164 aa; hypothetical protein complement(3394166..3394660) Pectobacterium atrosepticum SCRI1043 2884807 YP_051128.1 CDS ECA3038 NC_004547.2 3394826 3395281 R Similar to Yersinia pestis hypothetical protein ypo2564 or y1623 SWALL:YP64_YERPE (SWALL:Q8ZDJ8) (151 aa) fasta scores: E(): 2.9e-52, 79.47% id in 151 aa, and to Photorhabdus temperata b2295 SWALL:AAN08358 (EMBL:AY137386) (151 aa) fasta scores: E(): 1.6e-45, 69.53% id in 151 aa; hypothetical protein complement(3394826..3395281) Pectobacterium atrosepticum SCRI1043 2884808 YP_051129.1 CDS ackA NC_004547.2 3395711 3396913 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 3395711..3396913 Pectobacterium atrosepticum SCRI1043 2884797 YP_051130.1 CDS pta NC_004547.2 3396993 3399131 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 3396993..3399131 Pectobacterium atrosepticum SCRI1043 2881866 YP_051131.1 CDS ECA3041 NC_004547.2 3399252 3400112 D Similar to Agrobacterium tumefaciens hypothetical protein atu1921 or agr_c_3514 SWALL:Q8UE42 (EMBL:AE009146) (298 aa) fasta scores: E(): 8.5e-88, 72.9% id in 262 aa, and to Pasteurella multocida hypothetical protein Pm1172 SWALL:Q9CLP5 (EMBL:AE006157) (281 aa) fasta scores: E(): 4.8e-85, 73.74% id in 259 aa; hypothetical protein 3399252..3400112 Pectobacterium atrosepticum SCRI1043 2884933 YP_051132.1 CDS ECA3042 NC_004547.2 3400193 3400873 R Similar to Yersinia pestis NUDIX hydrolase ypo2781 or y1614 SWALL:YR81_YERPE (SWALL:Q8ZD12) (182 aa) fasta scores: E(): 1.1e-56, 80.66% id in 181 aa, and to Salmonella typhimurium, and Salmonella typhi NUDIX hydrolase yfcd or stm2346 or sty2576 SWALL:YFCD_SALTY (SWALL:Q8XFF7) (184 aa) fasta scores: E(): 1.4e-55, 82.08% id in 173 aa; NUDIX hydrolase complement(3400193..3400873) Pectobacterium atrosepticum SCRI1043 2884934 YP_051133.1 CDS ECA3043 NC_004547.2 3400997 3401548 R Similar to Salmonella typhimurium, and Salmonella typhi phosphoesterase yfce or stm2347 or sty2577 SWALL:Q8XGM7 (EMBL:AE008805) (183 aa) fasta scores: E(): 5.3e-49, 71.27% id in 181 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yfce or b2300 or c2843 or z3562 or ecs3184 SWALL:YFCE_ECOLI (SWALL:P76495) (184 aa) fasta scores: E(): 1.1e-50, 72.37% id in 181 aa; phosphodiesterase complement(3400997..3401548) Pectobacterium atrosepticum SCRI1043 2884935 YP_051134.1 CDS ECA3044 NC_004547.2 3401812 3402438 D Similar to Salmonella typhimurium glutathione S-transferase yfcg or stm2349 SWALL:Q8ZNC9 (EMBL:AE008805) (215 aa) fasta scores: E(): 2.4e-60, 71.98% id in 207 aa, and to Escherichia coli hypothetical GST-like protein yfcg or b2302 SWALL:YFCG_ECOLI (SWALL:P77526) (215 aa) fasta scores: E(): 5.7e-59, 71.01% id in 207 aa; glutathione-S transferase 3401812..3402438 Pectobacterium atrosepticum SCRI1043 2885697 YP_051135.1 CDS folX NC_004547.2 3402596 3402967 D catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3402596..3402967 Pectobacterium atrosepticum SCRI1043 2885250 YP_051136.1 CDS ECA3046 NC_004547.2 3402984 3403889 D Similar to Yersinia pestis hypothetical protein Ypo2778 SWALL:Q8ZD15 (EMBL:AJ414153) (302 aa) fasta scores: E(): 1.1e-82, 71% id in 300 aa, and to Salmonella typhi hypothetical protein Sty2580 sty2580 SWALL:Q8Z512 (EMBL:AL627274) (297 aa) fasta scores: E(): 2.6e-78, 65.77% id in 298 aa; hypothetical protein 3402984..3403889 Pectobacterium atrosepticum SCRI1043 2885698 YP_051137.1 CDS hisP NC_004547.2 3404058 3404831 R Similar to Escherichia coli histidine transport ATP-binding protein HisP or b2306 SWALL:HISP_ECOLI (SWALL:P07109) (257 aa) fasta scores: E(): 1.5e-73, 82.87% id in 257 aa; histidine/lysine/arginine/ornithine transporter subunit complement(3404058..3404831) Pectobacterium atrosepticum SCRI1043 2881716 YP_051138.1 CDS hisM NC_004547.2 3404848 3405564 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri histidine transport system permease protein HisM or b2307 or c2849 or z3569 or ecs3191 or sf2383 SWALL:HISM_ECOLI (SWALL:P20091) (238 aa) fasta scores: E(): 2.8e-79, 79.41% id in 238 aa; histidine ABC transporter permease complement(3404848..3405564) Pectobacterium atrosepticum SCRI1043 2881715 YP_051139.1 CDS hisQ NC_004547.2 3405557 3406246 R Similar to Escherichia coli histidine transport system permease protein HisQ or b2308 SWALL:HISQ_ECOLI (SWALL:P52094) (228 aa) fasta scores: E(): 3.5e-63, 74.44% id in 227 aa; histidine ABC transporter permease complement(3405557..3406246) Pectobacterium atrosepticum SCRI1043 2881717 YP_051140.1 CDS hisJ NC_004547.2 3406395 3407174 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 histidine-binding periplasmic protein precursor HisJ or b2309 or c2851 or z3571 or ecs3193 SWALL:HISJ_ECOLI (SWALL:P39182) (260 aa) fasta scores: E(): 1.8e-69, 73.28% id in 262 aa; histidine-binding periplasmic protein complement(3406395..3407174) Pectobacterium atrosepticum SCRI1043 2881714 YP_051141.1 CDS ubiX NC_004547.2 3407589 3408161 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(3407589..3408161) Pectobacterium atrosepticum SCRI1043 2884211 YP_051142.1 CDS purF NC_004547.2 3408341 3409858 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(3408341..3409858) Pectobacterium atrosepticum SCRI1043 2881326 YP_051143.1 CDS cvpA NC_004547.2 3409880 3410380 R membrane protein required for colicin V production; colicin V production protein complement(3409880..3410380) Pectobacterium atrosepticum SCRI1043 2883325 YP_051144.1 CDS dedD NC_004547.2 3410557 3411267 R Similar to Yersinia pestis membrane protein DedD or ypo2770 SWALL:Q8ZD23 (EMBL:AJ414153) (240 aa) fasta scores: E(): 2.2e-30, 60.49% id in 243 aa, and to Escherichia coli DedD protein dedd or b2314 SWALL:DEDD_ECOLI (SWALL:P09549) (220 aa) fasta scores: E(): 1e-15, 58.97% id in 234 aa; hypothetical protein complement(3410557..3411267) Pectobacterium atrosepticum SCRI1043 2881919 YP_051145.1 CDS folC NC_004547.2 3411257 3412525 R Similar to Escherichia coli folc bifunctional protein [includes: folylpolyglutamate synthase and dihydrofolate synthase] FolC or DedC or b2315 SWALL:FOLC_ECOLI (SWALL:P08192) (422 aa) fasta scores: E(): 6e-112, 69.47% id in 416 aa; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(3411257..3412525) Pectobacterium atrosepticum SCRI1043 2882082 YP_051146.1 CDS accD NC_004547.2 3412631 3413548 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(3412631..3413548) Pectobacterium atrosepticum SCRI1043 2885204 YP_051147.1 CDS dedA NC_004547.2 3413773 3414435 R Similar to Escherichia coli, and Escherichia coli O157:H7 deda protein DedA or b2317 or z3579 or ecs3201 SWALL:DEDA_ECOLI (SWALL:P09548) (219 aa) fasta scores: E(): 2.8e-75, 86.11% id in 216 aa, and to Salmonella typhimurium, and Salmonella typhi DedA family protein or stm2367 or sty2598 SWALL:Q8XEL7 (EMBL:AE008806) (219 aa) fasta scores: E(): 1.5e-75, 86.11% id in 216 aa; hypothetical protein complement(3413773..3414435) Pectobacterium atrosepticum SCRI1043 2884758 YP_051148.1 CDS truA NC_004547.2 3414618 3415469 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(3414618..3415469) Pectobacterium atrosepticum SCRI1043 2884233 YP_051149.1 CDS ECA3059 NC_004547.2 3415469 3416479 R Similar to Shewanella violacea aspartate-semialdehyde dehydrogenase Asd SWALL:DHAS_SHEVI (SWALL:Q56734) (338 aa) fasta scores: E(): 1.3e-55, 45.1% id in 337 aa, and to Yersinia pestis aspartate-semialdehyde dehydrogenase Asd or ypo2765 or usg or y1598 SWALL:Q8ZD28 (EMBL:AJ414153) (336 aa) fasta scores: E(): 2.8e-104, 80.59% id in 335 aa; semialdehyde dehydrogenase complement(3415469..3416479) Pectobacterium atrosepticum SCRI1043 2885699 YP_051150.1 CDS pdxB NC_004547.2 3416595 3417731 R catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase complement(3416595..3417731) Pectobacterium atrosepticum SCRI1043 2882127 YP_051151.1 CDS ECA3061 NC_004547.2 3418053 3418931 D Similar to Yersinia pestis membrane protein ypo2761 or y1595 SWALL:Q8ZD31 (EMBL:AJ414153) (305 aa) fasta scores: E(): 9.2e-76, 68.62% id in 290 aa, and to Pseudomonas putida membrane protein, pp4853 SWALL:AAN70422 (EMBL:AE016792) (293 aa) fasta scores: E(): 2e-50, 48.62% id in 290 aa; hypothetical protein 3418053..3418931 Pectobacterium atrosepticum SCRI1043 2885762 YP_051152.1 CDS flk NC_004547.2 3419025 3420278 D Similar to Yersinia pestis flagellar assembly regulatory protein, flk or ypo2760 or div or y1594 SWALL:AAM85163 (EMBL:AJ414153) (345 aa) fasta scores: E(): 6.1e-30, 39.47% id in 418 aa, and to Escherichia coli div protein div or b2321 SWALL:DIV_ECOLI (SWALL:P15286) (331 aa) fasta scores: E(): 3.4e-21, 31.19% id in 420 aa; flagella assembly protein 3419025..3420278 Pectobacterium atrosepticum SCRI1043 2882535 YP_051153.1 CDS fabB NC_004547.2 3420405 3421622 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(3420405..3421622) Pectobacterium atrosepticum SCRI1043 2883911 YP_051154.1 CDS mnmC NC_004547.2 3421795 3423822 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 3421795..3423822 Pectobacterium atrosepticum SCRI1043 2885763 YP_051155.1 CDS ECA3065 NC_004547.2 3423889 3424173 R Similar to Yersinia pestis hypothetical protein Ypo2755 SWALL:Q8ZD37 (EMBL:AJ414153) (92 aa) fasta scores: E(): 6.4e-25, 75% id in 92 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yfcl or b2325 or z3588 or ecs3209 SWALL:YFCL_ECOLI (SWALL:P76496) (92 aa) fasta scores: E(): 1.3e-20, 67.41% id in 89 aa; hypothetical protein complement(3423889..3424173) Pectobacterium atrosepticum SCRI1043 2885764 YP_051156.1 CDS ECA3066 NC_004547.2 3424208 3424753 R Similar to Salmonella typhimurium cytoplasmic protein yfcm or stm2381 SWALL:Q8ZNB1 (EMBL:AE008807) (182 aa) fasta scores: E(): 5.4e-64, 77.9% id in 181 aa, and to Shigella flexneri transporting ATPase yfcm or sf2402 SWALL:AAN43915 (EMBL:AE015256) (182 aa) fasta scores: E(): 6.4e-64, 77.9% id in 181 aa; hypothetical protein complement(3424208..3424753) Pectobacterium atrosepticum SCRI1043 2885765 YP_051157.1 CDS ECA3067 NC_004547.2 3424782 3425582 R Similar to Yersinia pestis membrane protein ypo2753 or y1587 SWALL:Q8ZD39 (EMBL:AJ414153) (268 aa) fasta scores: E(): 2e-74, 73.48% id in 264 aa, and to Salmonella typhimurium, and Salmonella typhi permease yfca or stm2382 or sty2614 SWALL:Q8XEQ5 (EMBL:AE008807) (269 aa) fasta scores: E(): 5.2e-72, 71.37% id in 262 aa; hypothetical protein complement(3424782..3425582) Pectobacterium atrosepticum SCRI1043 2884095 YP_051158.1 CDS mepA NC_004547.2 3425592 3426437 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(3425592..3426437) Pectobacterium atrosepticum SCRI1043 2885721 YP_051159.1 CDS aroC NC_004547.2 3426443 3427528 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(3426443..3427528) Pectobacterium atrosepticum SCRI1043 2884133 YP_051160.1 CDS ECA3070 NC_004547.2 3427616 3428548 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(3427616..3428548) Pectobacterium atrosepticum SCRI1043 2884096 YP_051161.1 CDS ECA3071 NC_004547.2 3428721 3429263 D Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yfcn or b2331 or c2877 or sf2406 SWALL:YFCN_ECOLI (SWALL:P77458) (183 aa) fasta scores: E(): 2.2e-54, 73.71% id in 175 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical protein yfcn or stm2386 or sty2618 SWALL:YFCN_SALTY (SWALL:Q8XFE8) (183 aa) fasta scores: E(): 3e-54, 73.14% id in 175 aa; hypothetical protein 3428721..3429263 Pectobacterium atrosepticum SCRI1043 2884097 YP_051162.1 CDS sixA NC_004547.2 3429348 3429830 R Similar to Escherichia coli phosphohistidine phosphatase SixA or b2340 SWALL:SIXA_ECOLI (SWALL:P76502) (161 aa) fasta scores: E(): 6.1e-35, 66.02% id in 156 aa; phosphohistidine phosphatase complement(3429348..3429830) Pectobacterium atrosepticum SCRI1043 2884388 YP_051163.1 CDS ECA3073 NC_004547.2 3430851 3431399 D Similar to Myxococcus xanthus protein U precursor Pru SWALL:PRU_MYXXA (SWALL:P27755) (179 aa) fasta scores: E(): 1.8e-07, 29.57% id in 186 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4648 SWALL:Q9HVE4 (EMBL:AE004879) (182 aa) fasta scores: E(): 4.5e-18, 39.78% id in 186 aa; hypothetical protein 3430851..3431399 Pectobacterium atrosepticum SCRI1043 2883981 YP_051164.1 CDS ECA3074 NC_004547.2 3431576 3432112 D Similar to Yersinia pestis exported protein ypo1698 SWALL:Q8ZFK5 (EMBL:AJ414150) (185 aa) fasta scores: E(): 3.6e-15, 33.88% id in 180 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4650 SWALL:Q9HVE2 (EMBL:AE004879) (180 aa) fasta scores: E(): 7.9e-30, 55.26% id in 152 aa; hypothetical protein 3431576..3432112 Pectobacterium atrosepticum SCRI1043 2883982 YP_051165.1 CDS ECA3075 NC_004547.2 3432149 3432922 D Similar to Pseudomonas aeruginosa probable pili assembly chaperone pa4651 SWALL:Q9HVE1 (EMBL:AE004879) (262 aa) fasta scores: E(): 1.3e-45, 49.78% id in 237 aa, and to Pseudomonas putida type 1 pili usher pathway chaperone CsuC or pp2361 SWALL:AAN67974 (EMBL:AE016782) (264 aa) fasta scores: E(): 8.6e-40, 45.6% id in 239 aa; fimbrial chaperone 3432149..3432922 Pectobacterium atrosepticum SCRI1043 2883983 YP_051166.1 CDS ECA3076 NC_004547.2 3432966 3435347 D Similar to Pseudomonas aeruginosa hypothetical protein Pa4652 SWALL:Q9HVE0 (EMBL:AE004879) (790 aa) fasta scores: E(): 1.3e-148, 51.74% id in 775 aa, and to Pseudomonas putida type 1 pili usher protein CsuD or pp2362 SWALL:AAN67975 (EMBL:AE016782) (797 aa) fasta scores: E(): 1.6e-125, 43.44% id in 778 aa; fimbrial usher protein 3432966..3435347 Pectobacterium atrosepticum SCRI1043 2883984 YP_051167.1 CDS ECA3077 NC_004547.2 3435352 3436362 D Similar to Pseudomonas aeruginosa hypothetical protein Pa4653 SWALL:Q9HVD9 (EMBL:AE004879) (315 aa) fasta scores: E(): 3.6e-55, 47.2% id in 322 aa, and to Yersinia pestis membrane protein ypo1695 or y1857 SWALL:Q8ZFK8 (EMBL:AJ414150) (329 aa) fasta scores: E(): 7.2e-33, 36.95% id in 341 aa; hypothetical protein 3435352..3436362 Pectobacterium atrosepticum SCRI1043 2883877 YP_051168.1 CDS fadJ NC_004547.2 3436355 3438550 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha complement(3436355..3438550) Pectobacterium atrosepticum SCRI1043 2883878 YP_051169.1 CDS fadI NC_004547.2 3438547 3439860 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(3438547..3439860) Pectobacterium atrosepticum SCRI1043 2883879 YP_051170.1 CDS ECA3080 NC_004547.2 3440099 3440395 R Similar to Yersinia pestis hypothetical protein Ypo2745 SWALL:Q8ZD47 (EMBL:AJ414153) (98 aa) fasta scores: E(): 5.1e-27, 74.48% id in 98 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yfcz or b2343 or c2888 SWALL:YFCZ_ECOLI (SWALL:P76504) (94 aa) fasta scores: E(): 7.5e-25, 69.14% id in 94 aa; hypothetical protein complement(3440099..3440395) Pectobacterium atrosepticum SCRI1043 2883755 YP_051171.1 CDS fadL NC_004547.2 3440778 3442064 D Similar to Escherichia coli long-chain fatty acid transport protein precursor FadL or Ttr or b2344 SWALL:FADL_ECOLI (SWALL:P10384) (448 aa) fasta scores: E(): 1.4e-45, 64.25% id in 456 aa, and to Yersinia pestis long-chain fatty acid transport protein FadL or ypo2744 SWALL:Q8ZD48 (EMBL:AJ414153) (423 aa) fasta scores: E(): 2.5e-128, 72.19% id in 428 aa; long-chain fatty acid outer membrane transporter 3440778..3442064 Pectobacterium atrosepticum SCRI1043 2883501 YP_051172.1 CDS mqo NC_004547.2 3442200 3443783 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(3442200..3443783) Pectobacterium atrosepticum SCRI1043 2881697 YP_051173.1 CDS vacJ NC_004547.2 3444146 3444907 R Similar to Shigella flexneri VacJ lipoprotein precursor VacJ or sf2424 SWALL:VACJ_SHIFL (SWALL:P43262) (251 aa) fasta scores: E(): 1.2e-75, 71.71% id in 251 aa, and to Yersinia pestis vacj lipoprotein VacJ or ypo2743 SWALL:Q8ZD49 (EMBL:AJ414153) (254 aa) fasta scores: E(): 3.3e-80, 76.68% id in 253 aa; lipoprotein complement(3444146..3444907) Pectobacterium atrosepticum SCRI1043 2882868 YP_051174.1 CDS ECA3084 NC_004547.2 3445525 3446463 D Similar to Salmonella typhi membrane protein sty2625 SWALL:Q8Z4Y7 (EMBL:AL627274) (313 aa) fasta scores: E(): 4.1e-76, 65.06% id in 312 aa, and to Escherichia coli O157:H7 transport yfdc or z3611 or ecs3230 SWALL:Q8XCN1 (EMBL:AE005466) (310 aa) fasta scores: E(): 8.4e-76, 66% id in 300 aa; hypothetical protein 3445525..3446463 Pectobacterium atrosepticum SCRI1043 2883756 YP_051175.1 CDS ECA3085 NC_004547.2 3446735 3447037 R Similar to Synechocystis sp. hypothetical protein Slr1025 SWALL:YA25_SYNY3 (SWALL:P73136) (112 aa) fasta scores: E(): 2.2e-12, 45.37% id in 108 aa, and to Streptococcus agalactiae hypothetical protein gbs1656 SWALL:CAD47315 (EMBL:AL766852) (92 aa) fasta scores: E(): 7.9, 29.11% id in 79 aa; hypothetical protein complement(3446735..3447037) Pectobacterium atrosepticum SCRI1043 2883757 YP_051176.1 CDS ECA3086 NC_004547.2 3447150 3447599 D Similar to Vibrio cholerae acetyltransferase, vca0479 and vca0400 SWALL:Q9K2Q6 (EMBL:AE004379) (151 aa) fasta scores: E(): 0.00011, 27.53% id in 138 aa, and to Ralstonia solanacearum hypothetical protein rsc0120 or rs00990 SWALL:Q8Y361 (EMBL:AL646057) (164 aa) fasta scores: E(): 0.00012, 31.03% id in 145 aa; acetyltransferase 3447150..3447599 Pectobacterium atrosepticum SCRI1043 2883221 YP_051177.1 CDS ECA3087 NC_004547.2 3447795 3448586 R Similar to Phytophthora parasitica necrosis-inducing protein Npp1 SWALL:Q9AT28 (EMBL:AF352031) (237 aa) fasta scores: E(): 1.9e-07, 31.1% id in 209 aa, and to Vibrio sp. CH-291 hypothetical 29.6 kDa protein SWALL:Q93IK1 (EMBL:AJ314791) (261 aa) fasta scores: E(): 9.1e-59, 55.98% id in 259 aa, and to Fusarium oxysporum f. sp. erythroxyli necrosis and ethylene inducing peptide Nep1 SWALL:O42737 (EMBL:AF036580) (253 aa) fasta scores: E(): 3.4e-06, 27.27% id in 231 aa; hypothetical protein complement(3447795..3448586) Pectobacterium atrosepticum SCRI1043 2883222 YP_051178.1 CDS ECA3088 NC_004547.2 3448807 3449568 R Weakly similar to Influenzavirus A neuraminidase SWALL:Q67222 (EMBL:D31948) (470 aa) fasta scores: E(): 10, 19.24% id in 265 aa; hypothetical protein complement(3448807..3449568) Pectobacterium atrosepticum SCRI1043 2883223 YP_051179.1 CDS ECA3089 NC_004547.2 3449697 3450047 R hypothetical protein complement(3449697..3450047) Pectobacterium atrosepticum SCRI1043 2883224 YP_051180.1 CDS ECA3090 NC_004547.2 3450488 3451027 D Weakly similar to the C-terminal region of Pseudomonas putida transcriptional regulator, cro/ci family pp0852 SWALL:AAN66477 (EMBL:AE016777) (335 aa) fasta scores: E(): 7.3, 28.69% id in 115 aa; hypothetical protein 3450488..3451027 Pectobacterium atrosepticum SCRI1043 2883030 YP_051181.1 CDS ECA3091 NC_004547.2 3451132 3451704 R Similar to Ralstonia solanacearum hypothetical protein rsc1344 or rs02866 SWALL:Q8XZQ1 (EMBL:AL646064) (222 aa) fasta scores: E(): 2.8e-26, 42.35% id in 170 aa, and to Brucella suis conserved hypothetical protein br0845 SWALL:AAN29774 (EMBL:AE014388) (188 aa) fasta scores: E(): 3.5e-21, 33.88% id in 180 aa; hypothetical protein complement(3451132..3451704) Pectobacterium atrosepticum SCRI1043 2883031 YP_051182.1 CDS dbpA NC_004547.2 3451774 3453156 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(3451774..3453156) Pectobacterium atrosepticum SCRI1043 2884898 YP_051183.1 CDS ECA3093 NC_004547.2 3453277 3454011 R Similar to Salmonella typhimurium molybdenum-binding periplasmic protein stm3141 SWALL:Q8ZM20 (EMBL:AE008844) (236 aa) fasta scores: E(): 1e-26, 40.25% id in 236 aa, and to Pasteurella multocida hypothetical protein Pm1146 SWALL:YB46_PASMU (SWALL:P57911) (241 aa) fasta scores: E(): 2e-26, 37.65% id in 239 aa; molybdate ABC transporter periplasmic molybdate-binding protein complement(3453277..3454011) Pectobacterium atrosepticum SCRI1043 2883032 YP_051184.1 CDS ECA3094 NC_004547.2 3454008 3454778 R Similar to Haemophilus influenzae hypothetical ABC transporter ATP-binding protein Hi1470 SWALL:YE70_HAEIN (SWALL:Q57399) (253 aa) fasta scores: E(): 9.5e-36, 46.12% id in 245 aa, and to Pasteurella multocida hypothetical protein Pm1147 SWALL:Q9CLR4 (EMBL:AE006155) (246 aa) fasta scores: E(): 1.2e-38, 47.22% id in 252 aa; ABC transporter ATP-binding protein complement(3454008..3454778) Pectobacterium atrosepticum SCRI1043 2884186 YP_051185.1 CDS ECA3095 NC_004547.2 3454780 3455799 R Similar to Haemophilus influenzae hypothetical ABC transporter permease protein Hi1471 SWALL:YE71_HAEIN (SWALL:Q57130) (337 aa) fasta scores: E(): 3e-65, 53.86% id in 336 aa, and to Pasteurella multocida hypothetical protein Pm1148 SWALL:Q9CLR3 (EMBL:AE006155) (340 aa) fasta scores: E(): 7.2e-70, 57.44% id in 329 aa; ABC transporter permease complement(3454780..3455799) Pectobacterium atrosepticum SCRI1043 2884187 YP_051186.1 CDS ECA3096 NC_004547.2 3455796 3456860 R Similar to Salmonella typhi possible ABC-transport protein, periplasmic-binding component sty3313 SWALL:Q8Z3R3 (EMBL:AL627277) (350 aa) fasta scores: E(): 6.1e-84, 64.84% id in 347 aa, and to Pasteurella multocida hypothetical protein Pm1149 SWALL:Q9CLR2 (EMBL:AE006155) (350 aa) fasta scores: E(): 3.1e-90, 71.85% id in 334 aa; ABC-transporter periplasmic-binding protein complement(3455796..3456860) Pectobacterium atrosepticum SCRI1043 2884188 YP_051187.1 CDS ECA3097 NC_004547.2 3457211 3458236 D Similar to Agrobacterium tumefaciens monooxygenase atu4121 or agr_l_1468 SWALL:Q8U8H1 (EMBL:AE009343) (340 aa) fasta scores: E(): 2.4e-113, 82.94% id in 340 aa, and to Brucella melitensis alkanal monooxygenase alpha chain bmei0017 SWALL:Q8YJR5 (EMBL:AE009445) (340 aa) fasta scores: E(): 6.4e-113, 82.05% id in 340 aa; monooxygenase 3457211..3458236 Pectobacterium atrosepticum SCRI1043 2884189 YP_051188.1 CDS outO NC_004547.2 3458845 3459693 R Similar to Erwinia carotovora type 4 prepilin-like proteins leader peptide processing enzyme OutO SWALL:LEP4_ERWCA (SWALL:P31712) (279 aa) fasta scores: E(): 1.8e-104, 89.71% id in 282 aa, and to Erwinia chrysanthemi type 4 prepilin-like proteins leader peptide processing enzyme OutO SWALL:LEP4_ERWCH (SWALL:P31711) (283 aa) fasta scores: E(): 4.6e-73, 61.51% id in 278 aa; type 4 prepilin-like proteins leader peptide processing protein complement(3458845..3459693) Pectobacterium atrosepticum SCRI1043 2882221 YP_051189.1 CDS outN NC_004547.2 3459817 3460563 R Similar to Erwinia carotovora general secretion pathway protein N OutN SWALL:GSPN_ERWCA (SWALL:P31710) (248 aa) fasta scores: E(): 3e-88, 88.71% id in 248 aa, and to Klebsiella pneumoniae general secretion pathway protein N PulN SWALL:GSPN_KLEPN (SWALL:P15753) (252 aa) fasta scores: E(): 2.5e-26, 35.88% id in 248 aa; general secretion pathway protein N complement(3459817..3460563) Pectobacterium atrosepticum SCRI1043 2882220 YP_051190.1 CDS outM NC_004547.2 3460553 3461047 R Similar to Erwinia carotovora general secretion pathway protein M OutM SWALL:GSPM_ERWCA (SWALL:P31709) (164 aa) fasta scores: E(): 6.7e-54, 87.19% id in 164 aa, and to Erwinia chrysanthemi general secretion pathway protein M OutM SWALL:GSPM_ERWCH (SWALL:Q47422) (161 aa) fasta scores: E(): 3.1e-28, 52.5% id in 160 aa; general secretion pathway protein M complement(3460553..3461047) Pectobacterium atrosepticum SCRI1043 2882204 YP_051191.1 CDS outL NC_004547.2 3461044 3462321 R Similar to Erwinia carotovora general secretion pathway protein L OutL SWALL:GSPL_ERWCA (SWALL:P31708) (425 aa) fasta scores: E(): 3e-165, 94.11% id in 425 aa, and to Erwinia chrysanthemi general secretion pathway protein L OutL SWALL:GSPL_ERWCH (SWALL:P31707) (399 aa) fasta scores: E(): 9.7e-44, 53.51% id in 398 aa; general secretion pathway protein L complement(3461044..3462321) Pectobacterium atrosepticum SCRI1043 2882203 YP_051192.1 CDS outK NC_004547.2 3462318 3463304 R Similar to Erwinia carotovora general secretion pathway protein K OutK SWALL:GSPK_ERWCA (SWALL:P31706) (328 aa) fasta scores: E(): 5.7e-125, 95.12% id in 328 aa, and to Erwinia chrysanthemi general secretion pathway protein K OutK SWALL:GSPK_ERWCH (SWALL:P24690) (354 aa) fasta scores: E(): 8.7e-44, 50.69% id in 359 aa; general secretion pathway protein K complement(3462318..3463304) Pectobacterium atrosepticum SCRI1043 2882202 YP_051193.1 CDS outJ NC_004547.2 3463301 3463951 R Similar to Erwinia carotovora general secretion pathway protein J precursor OutJ SWALL:GSPJ_ERWCA (SWALL:P31589) (216 aa) fasta scores: E(): 1e-74, 95.96% id in 198 aa, and to Erwinia chrysanthemi general secretion pathway protein J precursor OutJ SWALL:GSPJ_ERWCH (SWALL:P24689) (206 aa) fasta scores: E(): 3.8e-43, 60.82% id in 194 aa; general secretion pathway protein J complement(3463301..3463951) Pectobacterium atrosepticum SCRI1043 2882746 YP_051194.1 CDS outI NC_004547.2 3463951 3464316 R Similar to Erwinia carotovora general secretion pathway protein I precursor OutI SWALL:GSPI_ERWCA (SWALL:P31588) (121 aa) fasta scores: E(): 1.4e-44, 94.21% id in 121 aa, and to Erwinia chrysanthemi general secretion pathway protein I precursor OutI SWALL:GSPI_ERWCH (SWALL:P24688) (125 aa) fasta scores: E(): 3.3e-27, 59.32% id in 118 aa; general secretion pathway protein I complement(3463951..3464316) Pectobacterium atrosepticum SCRI1043 2882745 YP_051195.1 CDS outH NC_004547.2 3464313 3464879 R Similar to Erwinia carotovora general secretion pathway protein H precursor OutH SWALL:GSPH_ERWCA (SWALL:P31587) (188 aa) fasta scores: E(): 1.7e-68, 92.02% id in 188 aa, and to Erwinia chrysanthemi general secretion pathway protein H precursor OutH SWALL:GSPH_ERWCH (SWALL:P24687) (181 aa) fasta scores: E(): 7.3e-32, 52.24% id in 178 aa; general secretion pathway protein H complement(3464313..3464879) Pectobacterium atrosepticum SCRI1043 2882744 YP_051196.1 CDS outG NC_004547.2 3464954 3465394 R Similar to Erwinia carotovora general secretion pathway protein G precursor OutG SWALL:GSPG_ERWCA (SWALL:P31586) (156 aa) fasta scores: E(): 2.3e-51, 97.88% id in 142 aa, and to Erwinia chrysanthemi general secretion pathway protein G precursor OutG SWALL:GSPG_ERWCH (SWALL:P31585) (153 aa) fasta scores: E(): 1.9e-42, 85.07% id in 134 aa; general secretion pathway protein G complement(3464954..3465394) Pectobacterium atrosepticum SCRI1043 2882812 YP_051197.1 CDS outF NC_004547.2 3465462 3466688 R Similar to Erwinia carotovora general secretion pathway protein F OutF SWALL:GSPF_ERWCA (SWALL:P31705) (408 aa) fasta scores: E(): 7.6e-150, 96.56% id in 408 aa, and to Erwinia chrysanthemi general secretion pathway protein F OutF SWALL:GSPF_ERWCH (SWALL:P31704) (404 aa) fasta scores: E(): 1.2e-116, 77.39% id in 407 aa; general secretion pathway protein F complement(3465462..3466688) Pectobacterium atrosepticum SCRI1043 2882811 YP_051198.1 CDS outE NC_004547.2 3466690 3468186 R Similar to Erwinia carotovora general secretion pathway protein E OutE SWALL:GSPE_ERWCA (SWALL:P31703) (498 aa) fasta scores: E(): 8e-167, 96.78% id in 498 aa, and to Erwinia chrysanthemi general secretion pathway protein E OutE SWALL:GSPE_ERWCH (SWALL:P31702) (498 aa) fasta scores: E(): 1.8e-140, 80.32% id in 498 aa; general secretion pathway protein E complement(3466690..3468186) Pectobacterium atrosepticum SCRI1043 2882810 YP_051199.1 CDS outD NC_004547.2 3468183 3470135 R Similar to Erwinia carotovora general secretion pathway protein D precursor OutD SWALL:GSPD_ERWCA (SWALL:P31701) (650 aa) fasta scores: E(): 3e-215, 92.76% id in 650 aa, and to Klebsiella pneumoniae general secretion pathway protein D precursor PulD SWALL:GSPD_KLEPN (SWALL:P15644) (660 aa) fasta scores: E(): 1.9e-173, 74.31% id in 654 aa; general secretion pathway protein D complement(3468183..3470135) Pectobacterium atrosepticum SCRI1043 2882809 YP_051200.1 CDS outC NC_004547.2 3470224 3471087 R Similar to Erwinia carotovora general secretion pathway protein C OutC SWALL:GSPC_ERWCA (SWALL:P31699) (285 aa) fasta scores: E(): 6.4e-96, 91.63% id in 287 aa, and to Erwinia chrysanthemi general secretion pathway protein C OutC SWALL:GSQC_ERWCH (SWALL:Q01564) (272 aa) fasta scores: E(): 1.5e-49, 52.01% id in 273 aa; general secretion pathway protein C complement(3470224..3471087) Pectobacterium atrosepticum SCRI1043 2882709 YP_051201.1 CDS pehX NC_004547.2 3471138 3473117 R Similar to Erwinia chrysanthemi exo-poly-alpha-D-galacturonosidase precursor PehX SWALL:PEHX_ERWCH (SWALL:P15922) (602 aa) fasta scores: E(): 1e-59, 48.5% id in 635 aa, and to Klebsiella oxytoca polygalacturonase PehX SWALL:Q8VP71 (EMBL:AY065648) (658 aa) fasta scores: E(): 2.7e-155, 60.63% id in 658 aa; exo-poly-alpha-D-galacturonosidase complement(3471138..3473117) Pectobacterium atrosepticum SCRI1043 2885349 YP_051202.1 CDS ECA3112 NC_004547.2 3473256 3474824 R Similar to Bacillus sp pectate lyase PelK SWALL:BAA05383 (EMBL:D26349) (420 aa) fasta scores: E(): 2.7e-35, 35.16% id in 472 aa, and to Erwinia chrysanthemi pectate lyase a precursor PelA SWALL:PELA_ERWCH (SWALL:P29155) (393 aa) fasta scores: E(): 1.1e-27, 31.9% id in 442 aa; pectate lyase complement(3473256..3474824) Pectobacterium atrosepticum SCRI1043 2884170 YP_051203.1 CDS outB NC_004547.2 3475542 3476117 D Similar to Erwinia chrysanthemi general secretion pathway protein B OutB SWALL:GSPB_ERWCH (SWALL:Q01563) (220 aa) fasta scores: E(): 8.7e-15, 42.85% id in 217 aa, and to Klebsiella pneumoniae general secretion pathway protein B PulB SWALL:GSPB_KLEPN (SWALL:P20725) (174 aa) fasta scores: E(): 1.5e-12, 38.06% id in 176 aa; general secretion pathway protein 3475542..3476117 Pectobacterium atrosepticum SCRI1043 2882708 YP_051204.1 CDS outS NC_004547.2 3476114 3476527 R Similar to Erwinia chrysanthemi OutS lipoprotein precursor OutS SWALL:OUTS_ERWCH (SWALL:Q01567) (133 aa) fasta scores: E(): 4.7e-24, 54.07% id in 135 aa, and to Klebsiella pneumoniae pullulanase secretion protein PulS precursor PulS SWALL:PULS_KLEPN (SWALL:P20440) (125 aa) fasta scores: E(): 7.5e-16, 47.93% id in 121 aa; general secretion pathway lipoprotein complement(3476114..3476527) Pectobacterium atrosepticum SCRI1043 2882222 YP_051205.1 CDS ECA3115 NC_004547.2 3476636 3477877 R Similar to Yersinia pestis aminotransferase ypo2975 or y1507 SWALL:AAM85078 (EMBL:AJ414154) (411 aa) fasta scores: E(): 4.2e-150, 92.57% id in 404 aa, and to Escherichia coli hypothetical aminotransferase yfdz or b2379 SWALL:YFDZ_ECOLI (SWALL:P77434) (412 aa) fasta scores: E(): 7.1e-147, 90.32% id in 403 aa; aminotransferase complement(3476636..3477877) Pectobacterium atrosepticum SCRI1043 2884171 YP_051206.1 CDS ECA3116 NC_004547.2 3478244 3479224 D Similar to Rhizobium loti probable muconate cycloisomerase mlr0803 SWALL:Q98LZ8 (EMBL:AP002995) (327 aa) fasta scores: E(): 7.8e-64, 52.97% id in 319 aa, and to Brucella suis mandelate racemase/muconate lactonizing enzyme family protein br1018 SWALL:AAN29940 (EMBL:AE014403) (326 aa) fasta scores: E(): 1.2e-63, 52.94% id in 323 aa; mandelate racemase/muconate lactonizing protein 3478244..3479224 Pectobacterium atrosepticum SCRI1043 2884172 YP_051207.1 CDS dat NC_004547.2 3479267 3480127 D Similar to Staphylococcus haemolyticus D-alanine aminotransferase Dat SWALL:DAAA_STAHA (SWALL:P54694) (282 aa) fasta scores: E(): 4.8e-36, 38.57% id in 280 aa, and to Agrobacterium tumefaciens D-alanine aminotransferase Dat or atu5473 or agr_pat_698 SWALL:Q8UJK4 (EMBL:AE008968) (290 aa) fasta scores: E(): 6.7e-61, 55.39% id in 278 aa; D-alanine aminotransferase 3479267..3480127 Pectobacterium atrosepticum SCRI1043 2885142 YP_051208.1 CDS ECA3118 NC_004547.2 3480208 3482655 R Similar to Pseudomonas putida membrane protein, pp0707 SWALL:AAN66332 (EMBL:AE016776) (855 aa) fasta scores: E(): 7.4e-106, 43.1% id in 798 aa, and to Xanthomonas campestris hypothetical protein Xcc0402 SWALL:Q8PDD8 (EMBL:AE012136) (821 aa) fasta scores: E(): 4e-50, 30.14% id in 806 aa, and to Erwinia chrysanthemi BspA protein precursor BspA SWALL:Q9EV03 (EMBL:AJ251781) (1106 aa) fasta scores: E(): 1.5e-22, 22.75% id in 813 aa; mechanosensitive ion channel protein complement(3480208..3482655) Pectobacterium atrosepticum SCRI1043 2884167 YP_051209.1 CDS ECA3119 NC_004547.2 3483328 3484431 R hypothetical protein complement(3483328..3484431) Pectobacterium atrosepticum SCRI1043 2884168 YP_051210.1 CDS hsdS NC_004547.2 3484442 3486097 R Similar to Escherichia coli type i restriction enzyme EcoEI specificity protein HsdS or Hss SWALL:T1SE_ECOLI (SWALL:P19705) (594 aa) fasta scores: E(): 4.7e-62, 44.05% id in 606 aa, and to Salmonella enterica styski methylase HsdS SWALL:P95733 (EMBL:Y11005) (587 aa) fasta scores: E(): 6.2e-57, 40.95% id in 608 aa; subunit S of type I restriction-modification system complement(3484442..3486097) Pectobacterium atrosepticum SCRI1043 2884094 YP_051211.1 CDS hsdM NC_004547.2 3486097 3487569 R Similar to Escherichia coli type I restriction enzyme EcoEI M protein HsdM SWALL:T1ME_ECOLI (SWALL:Q47282) (490 aa) fasta scores: E(): 6.2e-193, 97.55% id in 490 aa, and to Salmonella enterica styski methylase HsdM SWALL:P95732 (EMBL:Y11005) (493 aa) fasta scores: E(): 2e-178, 89.38% id in 490 aa; subunit M of type I restriction-modification system complement(3486097..3487569) Pectobacterium atrosepticum SCRI1043 2884092 YP_051212.1 CDS hsdR NC_004547.2 3487642 3490068 R Similar to Escherichia coli type I restriction enzyme EcoEI R protein HsdR or Hsr SWALL:T1RE_ECOLI (SWALL:Q47281) (813 aa) fasta scores: E(): 0, 94.71% id in 813 aa, and to Pseudomonas putida type I restriction-modification system, R subunit hsdr or pp4740 SWALL:AAN70312 (EMBL:AE016791) (787 aa) fasta scores: E(): 3.5e-149, 61.76% id in 803 aa; type I restriction enzyme EcoEI R protein complement(3487642..3490068) Pectobacterium atrosepticum SCRI1043 2884093 YP_051213.1 CDS ECA3123 NC_004547.2 3490205 3490507 R hypothetical protein complement(3490205..3490507) Pectobacterium atrosepticum SCRI1043 2884169 YP_051214.1 CDS ECA3124 NC_004547.2 3490764 3490928 D Similar to Salmonella typhi hypothetical protein Sty3182 SWALL:Q8Z3Y7 (EMBL:AL627277) (132 aa) fasta scores: E(): 5.7e-05, 57.5% id in 40 aa, and to Shigella flexneri, and Shigella flexneri 2a stborf2 stborf2 or mvpA SWALL:O06662 (EMBL:U82621) (132 aa) fasta scores: E(): 0.00041, 55% id in 40 aa; hypothetical protein 3490764..3490928 Pectobacterium atrosepticum SCRI1043 2884119 YP_051215.1 CDS ECA3125 NC_004547.2 3491089 3492066 D Similar to Agrobacterium tumefaciens hypothetical protein atu3824 or agr_l_2017 SWALL:Q8U9A4 (EMBL:AE009313) (327 aa) fasta scores: E(): 1.1e-98, 76.14% id in 327 aa, and to Vibrio vulnificus conserved hypothetical protein vv20997 SWALL:AAO07909 (EMBL:AE016811) (366 aa) fasta scores: E(): 5.4e-97, 75.61% id in 324 aa; hypothetical protein 3491089..3492066 Pectobacterium atrosepticum SCRI1043 2884120 YP_051216.1 CDS metE NC_004547.2 3492094 3493125 D catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3492094..3493125 Pectobacterium atrosepticum SCRI1043 2883947 YP_051217.1 CDS ECA3127 NC_004547.2 3493259 3493480 R Similar to Bos taurus acyl carrier protein, mitochondrial ndufab1 SWALL:ACPM_BOVIN (SWALL:P52505) (88 aa) fasta scores: E(): 0.18, 27.94% id in 68 aa, and to Fusobacterium nucleatum acyl carrier protein acpp or fn0150 SWALL:ACP_FUSNN (SWALL:Q8RGX5) (75 aa) fasta scores: E(): 1.9, 30.66% id in 75 aa; acyl carrier protein complement(3493259..3493480) Pectobacterium atrosepticum SCRI1043 2884121 YP_051218.1 CDS dltA NC_004547.2 3493498 3494931 R Similar to Staphylococcus aureus D-alanine--poly(phosphoribitol) ligase subunit 1 DltA or mw0814 SWALL:DLTA_STAAW (SWALL:Q9S673) (485 aa) fasta scores: E(): 1.8e-42, 37.15% id in 471 aa, and to Lactococcus lactis D-alanine--poly(phosphoribitol) ligase subunit 1 DltA or ll1261 SWALL:DLTA_LACLA (SWALL:Q9CG49) (499 aa) fasta scores: E(): 1.3e-37, 32.03% id in 487 aa; D-alanine--poly(phosphoribitol) ligase subunit 1 complement(3493498..3494931) Pectobacterium atrosepticum SCRI1043 2882952 YP_051219.1 CDS dltB NC_004547.2 3494928 3496046 R Similar to Bacillus subtilis protein DltB or ipa-4R SWALL:DLTB_BACSU (SWALL:P39580) (395 aa) fasta scores: E(): 3.9e-24, 31% id in 400 aa, and to Staphylococcus epidermidis DltB membrane protein se0625 SWALL:AAO04222 (EMBL:AE016746) (404 aa) fasta scores: E(): 1.1e-23, 28.9% id in 346 aa; peptidoglycan biosynthesis protein complement(3494928..3496046) Pectobacterium atrosepticum SCRI1043 2882953 YP_051220.1 CDS dltD NC_004547.2 3496176 3497312 R Similar to Staphylococcus aureus, and Staphylococcus aureus exoprotein DltD or mw0817 SWALL:Q9S674 (EMBL:AF101234) (391 aa) fasta scores: E(): 0.028, 20.97% id in 391 aa, and to Staphylococcus aureus poly(glycerophosphate chain) D-alanine transfer protein DltD or sav0935 or sa0796 SWALL:Q99VE6 (EMBL:AP003360) (391 aa) fasta scores: E(): 0.028, 20.97% id in 391 aa; poly(glycerophosphate chain) D-alanine transfer protein complement(3496176..3497312) Pectobacterium atrosepticum SCRI1043 2882798 YP_051221.1 CDS ECA3131 NC_004547.2 3497785 3498189 D hypothetical protein 3497785..3498189 Pectobacterium atrosepticum SCRI1043 2884122 YP_051222.1 CDS ECA3132 NC_004547.2 3498248 3498448 D lipoprotein 3498248..3498448 Pectobacterium atrosepticum SCRI1043 2884098 YP_051223.1 CDS ECA3133 NC_004547.2 3498588 3499022 R hypothetical protein complement(3498588..3499022) Pectobacterium atrosepticum SCRI1043 2884099 YP_051224.1 CDS ECA3134 NC_004547.2 3499135 3500028 R Similar to Yersinia pestis lysr-family transcriptional regulatory protein ptxr or ypo2807 or y1123 SWALL:Q8ZCZ5 (EMBL:AJ414153) (297 aa) fasta scores: E(): 4.2e-79, 68.47% id in 295 aa, and to Escherichia coli O6 hypothetical transcriptional regulator ycjz c0412 SWALL:Q8FKK6 (EMBL:AE016756) (322 aa) fasta scores: E(): 6.1e-77, 66.44% id in 295 aa; LysR family transcriptional regulator complement(3499135..3500028) Pectobacterium atrosepticum SCRI1043 2884100 YP_051225.1 CDS ECA3135 NC_004547.2 3500331 3500732 D Similar to Xanthomonas axonopodis hypothetical protein Xac2840 SWALL:Q8PIQ5 (EMBL:AE011925) (130 aa) fasta scores: E(): 5.5e-34, 69.29% id in 127 aa, and to Bradyrhizobium japonicum Bll4598 protein bll4598 SWALL:BAC49863 (EMBL:AP005951) (203 aa) fasta scores: E(): 5.9e-33, 66.41% id in 131 aa; hypothetical protein 3500331..3500732 Pectobacterium atrosepticum SCRI1043 2885632 YP_051226.1 CDS ECA3136 NC_004547.2 3500807 3501130 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 3.9e-10, 41.23% id in 97 aa, and to Yersinia pestis PTS system, cellobiose-specific IIa component CelC or ypo2680 or y1253 SWALL:AAM84827 (EMBL:AJ414153) (115 aa) fasta scores: E(): 3.6e-12, 45.91% id in 98 aa; PTS system cellobiose-specific transporter subunit IIA complement(3500807..3501130) Pectobacterium atrosepticum SCRI1043 2885633 YP_051227.1 CDS sfuA NC_004547.2 3501629 3502645 D Similar to Serratia marcescens iron(III)-binding periplasmic protein precursor SfuA SWALL:SFUA_SERMA (SWALL:P21408) (338 aa) fasta scores: E(): 1.3e-102, 82.84% id in 338 aa, and to Yersinia enterocolitica YfuA SWALL:Q56925 (EMBL:Z47200) (338 aa) fasta scores: E(): 4.7e-99, 80.17% id in 338 aa; iron(III)-binding periplasmic protein 3501629..3502645 Pectobacterium atrosepticum SCRI1043 2884392 YP_051228.1 CDS sfuB NC_004547.2 3502786 3504363 D Similar to Serratia marcescens iron(III)-transport system permease protein SfuB SWALL:SFUB_SERMA (SWALL:P21409) (527 aa) fasta scores: E(): 7.3e-141, 71.29% id in 526 aa, and to Yersinia pestis iron(III)-transport system permease protein SfuB or ypo2959 SWALL:Q8ZCM3 (EMBL:AJ414154) (528 aa) fasta scores: E(): 2.2e-139, 70.61% id in 524 aa; iron ABC transporter permease 3502786..3504363 Pectobacterium atrosepticum SCRI1043 2884393 YP_051229.1 CDS sfuC NC_004547.2 3504366 3505406 D Similar to Serratia marcescens iron(III)-transport ATP-binding protein SfuC SWALL:SFUC_SERMA (SWALL:P21410) (345 aa) fasta scores: E(): 3.5e-64, 59.59% id in 344 aa, and to Yersinia pestis iron(III)-transport ATP-binding protein SfuC or ypo2960 or yfuc or y1524 SWALL:AAM85095 (EMBL:AJ414154) (349 aa) fasta scores: E(): 8.4e-65, 57.92% id in 347 aa; iron(III)-transport ATP-binding protein 3504366..3505406 Pectobacterium atrosepticum SCRI1043 2884394 YP_051230.1 CDS ECA3140 NC_004547.2 3505436 3505828 R Similar to Yersinia pseudotuberculosis hypothetical protein YfbJ SWALL:YFBJ_YERPS (SWALL:Q93PD4) (128 aa) fasta scores: E(): 1e-20, 52.5% id in 120 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3558 SWALL:YZ58_PSEAE (SWALL:Q9HY59) (137 aa) fasta scores: E(): 3e-11, 41.73% id in 127 aa; hypothetical protein complement(3505436..3505828) Pectobacterium atrosepticum SCRI1043 2885634 YP_051231.1 CDS ECA3141 NC_004547.2 3505828 3506169 R Similar to Yersinia pestis, and Yersinia pseudotuberculosis membrane protein ypo2417 SWALL:Q93PD5 (EMBL:AJ414152) (114 aa) fasta scores: E(): 1e-20, 57.79% id in 109 aa, and to Salmonella typhimurium hypothetical protein yfbw or stm2302 SWALL:YFBW_SALTY (SWALL:O52328) (111 aa) fasta scores: E(): 6.8e-14, 48.18% id in 110 aa; hypothetical protein complement(3505828..3506169) Pectobacterium atrosepticum SCRI1043 2885635 YP_051232.1 CDS arnT NC_004547.2 3506166 3507836 R catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase complement(3506166..3507836) Pectobacterium atrosepticum SCRI1043 2882941 YP_051233.1 CDS ECA3143 NC_004547.2 3507854 3508747 R Similar to Yersinia pestis, and Yersinia pseudotuberculosis hypothetical protein ypo2419 or y1920 SWALL:Q93PD7 (EMBL:AJ414152) (301 aa) fasta scores: E(): 7.1e-88, 68.24% id in 296 aa, and to Salmonella typhimurium hypothetical protein yfbh or stm2300 SWALL:YFBH_SALTY (SWALL:O52326) (299 aa) fasta scores: E(): 7.7e-76, 62.92% id in 294 aa; hypothetical protein complement(3507854..3508747) Pectobacterium atrosepticum SCRI1043 2882942 YP_051234.1 CDS ECA3144 NC_004547.2 3508744 3510765 R Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase complement(3508744..3510765) Pectobacterium atrosepticum SCRI1043 2882943 YP_051235.1 CDS ECA3145 NC_004547.2 3510762 3511745 R catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase complement(3510762..3511745) Pectobacterium atrosepticum SCRI1043 2882795 YP_051236.1 CDS ECA3146 NC_004547.2 3511738 3512886 R catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase complement(3511738..3512886) Pectobacterium atrosepticum SCRI1043 2882796 YP_051237.1 CDS ugd NC_004547.2 3513113 3514279 R Similar to Escherichia coli UDP-glucose 6-dehydrogenase Ugd or b2028 SWALL:UDG_ECOLI (SWALL:P76373) (388 aa) fasta scores: E(): 2.4e-110, 73.96% id in 388 aa, and to Vibrio cholerae nucleotide sugar dehydrogenase SWALL:Q56625 (EMBL:U47057) (388 aa) fasta scores: E(): 1e-110, 72.93% id in 388 aa; UDP-glucose 6-dehydrogenase complement(3513113..3514279) Pectobacterium atrosepticum SCRI1043 2884207 YP_051238.1 CDS ECA3148 NC_004547.2 3514800 3516347 D Similar to Pseudomonas putida GGDEF domain protein pp3242 SWALL:AAN68849 (EMBL:AE016786) (522 aa) fasta scores: E(): 4.1e-67, 38.67% id in 499 aa, and to Xanthomonas campestris response regulator xcc3729 SWALL:Q8P4H8 (EMBL:AE012493) (349 aa) fasta scores: E(): 4.4e-44, 39.94% id in 358 aa; regulator 3514800..3516347 Pectobacterium atrosepticum SCRI1043 2882797 YP_051239.1 CDS folD NC_004547.2 3516455 3517318 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3516455..3517318 Pectobacterium atrosepticum SCRI1043 2882083 YP_051240.1 CDS ECA3150 NC_004547.2 3517351 3517563 D Similar to Escherichia coli O6 hypothetical protein ybcj or c0644 SWALL:AAN79121 (EMBL:AE016757) (77 aa) fasta scores: E(): 3.2e-19, 79.41% id in 68 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein ybcj or stm0541 or sty0587 SWALL:Q8XG46 (EMBL:AE008721) (70 aa) fasta scores: E(): 5.8e-19, 77.94% id in 68 aa; hypothetical protein 3517351..3517563 Pectobacterium atrosepticum SCRI1043 2882717 YP_051241.1 CDS cysS NC_004547.2 3517663 3519048 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(3517663..3519048) Pectobacterium atrosepticum SCRI1043 2881422 YP_051242.1 CDS ECA3152 NC_004547.2 3519349 3519771 R Similar to Chlorobium tepidum hypothetical protein Ct0748 SWALL:Q8KEE1 (EMBL:AE012845) (133 aa) fasta scores: E(): 6.3e-19, 46.21% id in 132 aa, and to Shewanella oneidensis conserved hypothetical protein so3319 SWALL:AAN56317 (EMBL:AE015770) (147 aa) fasta scores: E(): 1.9e-06, 33.84% id in 130 aa; hypothetical protein complement(3519349..3519771) Pectobacterium atrosepticum SCRI1043 2882718 YP_051243.1 CDS ppiB NC_004547.2 3520193 3520687 D Similar to Escherichia coli peptidyl-prolyl cis-trans isomerase B PpiB or b0525 SWALL:PPIB_ECOLI (SWALL:P23869) (164 aa) fasta scores: E(): 3.1e-53, 81.7% id in 164 aa; peptidyl-prolyl cis-trans isomerase B 3520193..3520687 Pectobacterium atrosepticum SCRI1043 2882817 YP_051244.1 CDS lpxH NC_004547.2 3520698 3521420 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3520698..3521420 Pectobacterium atrosepticum SCRI1043 2882791 YP_051245.1 CDS purE NC_004547.2 3521609 3522118 D Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit 3521609..3522118 Pectobacterium atrosepticum SCRI1043 2881325 YP_051246.1 CDS purK NC_004547.2 3522115 3523185 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 3522115..3523185 Pectobacterium atrosepticum SCRI1043 2881328 YP_051247.1 CDS sdaC NC_004547.2 3523656 3524945 D Similar to Escherichia coli, and Escherichia coli O157:H7 serine transporter SdaC or DcrA or b2796 or z4113 or ecs3656 SWALL:SDAC_ECOLI (SWALL:P36559) (429 aa) fasta scores: E(): 8.6e-133, 78.68% id in 427 aa; serine transporter 3523656..3524945 Pectobacterium atrosepticum SCRI1043 2884418 YP_051248.1 CDS sdaB NC_004547.2 3525014 3526381 D Similar to Escherichia coli L-serine dehydratase 2 SdaB or b2797 SWALL:SDHM_ECOLI (SWALL:P30744) (455 aa) fasta scores: E(): 2.1e-132, 71.2% id in 455 aa. Also similar to ECA2380 (SdaA) (75.165% id. in 455 aa overlap); L-serine dehydratase 2 3525014..3526381 Pectobacterium atrosepticum SCRI1043 2884417 YP_051249.1 CDS ECA3160 NC_004547.2 3526486 3526923 R Similar to Salmonella typhimurium transcriptional regulator stm2195 SWALL:Q8ZNL4 (EMBL:AE008798) (129 aa) fasta scores: E(): 3.8e-14, 38.68% id in 137 aa, and to Salmonella typhi DNA-binding protein sty2429 SWALL:Q8Z5A0 (EMBL:AL627273) (129 aa) fasta scores: E(): 4.4e-14, 38.68% id in 137 aa; transcriptional regulator complement(3526486..3526923) Pectobacterium atrosepticum SCRI1043 2882719 YP_051250.1 CDS pstB NC_004547.2 3527053 3527868 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(3527053..3527868) Pectobacterium atrosepticum SCRI1043 2882475 YP_051251.1 CDS pstA NC_004547.2 3527884 3529530 R Similar to Pseudomonas aeruginosa a transmembrane component of the phosphate specific transport complex PstA SWALL:Q51545 (EMBL:D45195) (513 aa) fasta scores: E(): 8.4e-82, 50.99% id in 502 aa, and to Yersinia pestis phosphate transport system permease PstA or ypo2834 SWALL:Q8ZCX4 (EMBL:AJ414153) (570 aa) fasta scores: E(): 3.2e-124, 65.88% id in 551 aa; phosphate ABC transporter permease complement(3527884..3529530) Pectobacterium atrosepticum SCRI1043 2882470 YP_051252.1 CDS pstC NC_004547.2 3529527 3531695 R Similar to Pseudomonas aeruginosa phosphate transport system permease protein PstC or pa5368 SWALL:Q51544 (EMBL:D45195) (677 aa) fasta scores: E(): 4e-85, 40.05% id in 674 aa, and to Yersinia pestis phosphate transport system permease PstC or ypo2835 or y1399 SWALL:Q8ZCX3 (EMBL:AJ414153) (749 aa) fasta scores: E(): 1.2e-107, 52.21% id in 745 aa; phosphate ABC transporter permease complement(3529527..3531695) Pectobacterium atrosepticum SCRI1043 2882461 YP_051253.1 CDS ppk NC_004547.2 3531913 3533985 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 3531913..3533985 Pectobacterium atrosepticum SCRI1043 2882728 YP_051254.1 CDS ppx NC_004547.2 3533985 3535520 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 exopolyphosphatase Ppx or b2502 or c3020 or z3765 or ecs3364 SWALL:PPX_ECOLI (SWALL:P29014) (512 aa) fasta scores: E(): 8.4e-153, 75.3% id in 498 aa; exopolyphosphatase 3533985..3535520 Pectobacterium atrosepticum SCRI1043 2882331 YP_051255.1 CDS ECA3166 NC_004547.2 3535756 3535944 D hypothetical protein 3535756..3535944 Pectobacterium atrosepticum SCRI1043 2882720 YP_051256.1 CDS ohr NC_004547.2 3536586 3537011 R Similar to Xanthomonas axonopodis organic hydroperoxide resistance protein Ohr or xac0282 SWALL:OHR_XANAC (SWALL:O68390) (142 aa) fasta scores: E(): 7.1e-36, 71.94% id in 139 aa, and to Ralstonia solanacearum probable organic hydroperoxide resistance protein Ohr or rsp1107 or rs02615 SWALL:Q8XQW1 (EMBL:AL646082) (141 aa) fasta scores: E(): 2.7e-40, 77.3% id in 141 aa; organic hydroperoxide resistance protein complement(3536586..3537011) Pectobacterium atrosepticum SCRI1043 2883405 YP_051257.1 CDS ohrR NC_004547.2 3537204 3537641 R Similar to Xanthomonas campestris transcriptional regulator OhrR SWALL:Q93R11 (EMBL:AF036166) (153 aa) fasta scores: E(): 1.2e-34, 69.06% id in 139 aa; transcriptional regulator complement(3537204..3537641) Pectobacterium atrosepticum SCRI1043 2883406 YP_051258.1 CDS mgtE NC_004547.2 3537873 3539351 D Similar to Yersinia pestis divalent cation transport protein MgtE or ypo2839 or y1395 SWALL:Q8ZCW9 (EMBL:AJ414153) (491 aa) fasta scores: E(): 4.4e-112, 66.05% id in 489 aa, and to Pseudomonas putida magnesium transporter MgtE or pp4471 SWALL:AAN70046 (EMBL:AE016790) (480 aa) fasta scores: E(): 7.8e-83, 49.08% id in 489 aa; magnesium transporter 3537873..3539351 Pectobacterium atrosepticum SCRI1043 2883179 YP_051259.1 CDS galK NC_004547.2 3539417 3540580 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(3539417..3540580) Pectobacterium atrosepticum SCRI1043 2883096 YP_051260.1 CDS galT NC_004547.2 3540590 3541630 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(3540590..3541630) Pectobacterium atrosepticum SCRI1043 2883046 YP_051261.1 CDS galR NC_004547.2 3542091 3543101 D controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3542091..3543101 Pectobacterium atrosepticum SCRI1043 2883045 YP_051262.1 CDS lamB NC_004547.2 3543587 3544894 D porin involved in the transport of maltose and maltodextrins; maltoporin 3543587..3544894 Pectobacterium atrosepticum SCRI1043 2883667 YP_051263.1 CDS malK NC_004547.2 3545397 3546479 R Similar to Escherichia coli, and Escherichia coli O157:H7 maltose/maltodextrin transport ATP-binding protein MalK or b4035 or z5633 or ecs5018 SWALL:MALK_ECOLI (SWALL:P02914) (371 aa) fasta scores: E(): 1.1e-65, 53.48% id in 359 aa; maltose/maltodextrin transport ATP-binding protein complement(3545397..3546479) Pectobacterium atrosepticum SCRI1043 2881942 YP_051264.1 CDS malE NC_004547.2 3546973 3548205 D Similar to Escherichia coli, and Escherichia coli O157:H7 maltose-binding periplasmic protein precursor MalE or b4034 or z5632 or ecs5017 SWALL:MALE_ECOLI (SWALL:P02928) (396 aa) fasta scores: E(): 3.4e-31, 31.18% id in 404 aa, and to Yersinia pestis sugar-binding protein ypo0856 or y3241 SWALL:AAM86791 (EMBL:AJ414145) (420 aa) fasta scores: E(): 1.2e-97, 62.04% id in 411 aa; maltose-binding periplasmic protein 3546973..3548205 Pectobacterium atrosepticum SCRI1043 2881497 YP_051265.1 CDS malF NC_004547.2 3548305 3549609 D Similar to Escherichia coli maltose transport system permease protein MalF or b4033 SWALL:MALF_ECOLI (SWALL:P02916) (514 aa) fasta scores: E(): 5.9e-36, 39.71% id in 277 aa, and to Yersinia pestis maltodextrin transport permease ypo0855 or MalF or y3240 SWALL:Q8ZHN5 (EMBL:AJ414145) (435 aa) fasta scores: E(): 6.8e-138, 81.86% id in 419 aa; maltose transport system permease 3548305..3549609 Pectobacterium atrosepticum SCRI1043 2881498 YP_051266.1 CDS malG NC_004547.2 3549622 3550470 D Similar to Yersinia pestis maltodextrin permease protein ypo0854 or MalG or y3239 SWALL:Q8ZHN6 (EMBL:AJ414145) (283 aa) fasta scores: E(): 9.1e-93, 83.98% id in 281 aa, and to Bacillus halodurans maltose/maltodextrin transport system bh2021 SWALL:Q9KBA7 (EMBL:AP001514) (283 aa) fasta scores: E(): 1.9e-77, 69.14% id in 282 aa; maltose/maltodextrin transport permease 3549622..3550470 Pectobacterium atrosepticum SCRI1043 2881941 YP_051267.1 CDS ECA3178 NC_004547.2 3550506 3551726 D Similar to Pseudomonas fluorescens arabinogalactan endo-1,4-beta-galactosidase precursor GalA or GanA SWALL:GANA_PSEFL (SWALL:P48841) (376 aa) fasta scores: E(): 3.5e-35, 33.98% id in 409 aa, and to Yersinia pestis galactosidase ypo0853 or y3238 SWALL:Q8ZHN7 (EMBL:AJ414145) (400 aa) fasta scores: E(): 2.1e-117, 72.51% id in 393 aa; arabinogalactan endo-1,4-beta-galactosidase 3550506..3551726 Pectobacterium atrosepticum SCRI1043 2882853 YP_051268.1 CDS pbg NC_004547.2 3551956 3554016 D Similar to Clostridium perfringens beta-galactosidase Pbg SWALL:Q59312 (EMBL:D49537) (676 aa) fasta scores: E(): 1.1e-160, 52.44% id in 675 aa, and to Yersinia pestis puative beta-galactosidase BgaB or ypo0852 or y3237 SWALL:Q8ZHN8 (EMBL:AJ414145) (686 aa) fasta scores: E(): 0, 70.26% id in 686 aa; beta-galactosidase 3551956..3554016 Pectobacterium atrosepticum SCRI1043 2881415 YP_051269.1 CDS ECA3180 NC_004547.2 <3554169 3554510 D Similar to Yersinia pestis PTS transport protein ypo0851 or y3236 SWALL:Q8ZHN9 (EMBL:AJ414145) (103 aa) fasta scores: E(): 9.9e-12, 57.14% id in 77 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 PTS system, glucose-specific iibc component ptsg or glca or umg or b1101 or c1373 or z1740 or ecs1479 SWALL:PTGB_ECOLI (SWALL:P05053) (477 aa) fasta scores: E(): 1.6e-10, 58.33% id in 72 aa; PTS system glucose-specific transporter subunit IIBC (partial) <3554169..3554510 Pectobacterium atrosepticum SCRI1043 2882854 YP_051270.1 CDS dld NC_004547.2 3554642 3556399 R component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase complement(3554642..3556399) Pectobacterium atrosepticum SCRI1043 2882951 YP_051271.1 CDS ECA3182 NC_004547.2 3556470 3557435 R Similar to Pseudomonas aeruginosa probable oxidoreductase pa3795 SWALL:Q9HXK2 (EMBL:AE004798) (316 aa) fasta scores: E(): 1.6e-71, 64.55% id in 316 aa, and to Xanthomonas axonopodis oxidoreductase moca or xac0288 SWALL:Q8PQN5 (EMBL:AE011653) (323 aa) fasta scores: E(): 2.4e-69, 64.85% id in 313 aa; oxidoreductase complement(3556470..3557435) Pectobacterium atrosepticum SCRI1043 2882855 YP_051272.1 CDS nupC1 NC_004547.2 3557692 3558888 D Similar to Escherichia coli, and Escherichia coli O6 nucleoside permease NupC or Cru or b2393 or c2932 SWALL:NUPC_ECOLI (SWALL:P33031) (400 aa) fasta scores: E(): 8e-112, 77.36% id in 402 aa; nucleoside permease 3557692..3558888 Pectobacterium atrosepticum SCRI1043 2883789 YP_051273.1 CDS ECA3184 NC_004547.2 3559135 3560370 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA 3559135..3560370 Pectobacterium atrosepticum SCRI1043 2882257 YP_051274.1 CDS mdtB NC_004547.2 3560370 3563492 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB 3560370..3563492 Pectobacterium atrosepticum SCRI1043 2885119 YP_051275.1 CDS mdtC NC_004547.2 3563489 3566569 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC 3563489..3566569 Pectobacterium atrosepticum SCRI1043 2885084 YP_051276.1 CDS mdtD NC_004547.2 3566972 3568372 D Similar to Escherichia coli drug transporter MdtD SWALL:BAC06610 (EMBL:AB089190) (471 aa) fasta scores: E(): 6.9e-129, 74.02% id in 462 aa, and to Yersinia pestis membrane protein yegb or ypo2850 or y1383 SWALL:Q8ZCV8 (EMBL:AJ414154) (465 aa) fasta scores: E(): 1.2e-127, 73.92% id in 464 aa; multidrug efflux system protein MdtE 3566972..3568372 Pectobacterium atrosepticum SCRI1043 2885085 YP_051277.1 CDS baeS NC_004547.2 3568380 3569747 D Similar to Escherichia coli sensor protein BaeS or b2078 SWALL:BAES_ECOLI (SWALL:P30847) (467 aa) fasta scores: E(): 3.1e-113, 65.06% id in 458 aa; signal transduction histidine-protein kinase BaeS 3568380..3569747 Pectobacterium atrosepticum SCRI1043 2881541 YP_051278.1 CDS baeR NC_004547.2 3569781 3570509 D response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR 3569781..3570509 Pectobacterium atrosepticum SCRI1043 2881540 YP_051279.1 CDS sat NC_004547.2 3570531 3571184 D Similar to Yersinia enterocolitica streptogramin A acetyl transferase Sat SWALL:AAN77593 (EMBL:AF170730) (221 aa) fasta scores: E(): 3.9e-63, 72.72% id in 209 aa, and to Staphylococcus aureus Vat B vat B SWALL:Q57156 (EMBL:U19459) (212 aa) fasta scores: E(): 1.4e-51, 57.76% id in 206 aa; streptogramin A acetyl transferase 3570531..3571184 Pectobacterium atrosepticum SCRI1043 2884431 YP_051280.1 CDS ECA3191 NC_004547.2 3571239 3571790 D Similar to Pseudomonas putida acetyltransferase, GnaT family pp0820 SWALL:AAN66445 (EMBL:AE016777) (187 aa) fasta scores: E(): 1.9e-31, 48.57% id in 175 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1472 SWALL:Q9I3P0 (EMBL:AE004576) (184 aa) fasta scores: E(): 3.5e-39, 61.76% id in 170 aa; acetyltransferase 3571239..3571790 Pectobacterium atrosepticum SCRI1043 2882258 YP_051281.1 CDS ECA3192 NC_004547.2 3571960 3572919 D Similar to Vibrio cholerae hypothetical protein Vc1096 SWALL:Q9KT09 (EMBL:AE004190) (315 aa) fasta scores: E(): 4.6e-66, 53.58% id in 321 aa, and to Pseudomonas putida glutathione s-transferase domain protein pp3998 SWALL:AAN69592 (EMBL:AE016788) (325 aa) fasta scores: E(): 6.4e-66, 54.95% id in 313 aa; hypothetical protein 3571960..3572919 Pectobacterium atrosepticum SCRI1043 2882259 YP_051282.1 CDS ECA3193 NC_004547.2 3573115 3574479 D Similar to Yersinia pestis protease ypo2855 or y1379 SWALL:Q8ZCV5 (EMBL:AJ414154) (464 aa) fasta scores: E(): 9.6e-156, 84.92% id in 451 aa, and to Salmonella typhimurium, and Salmonella typhi protease yegq or stm2136 or sty2365 SWALL:Q8XFD2 (EMBL:AE008795) (453 aa) fasta scores: E(): 1.8e-153, 83.48% id in 454 aa; protease 3573115..3574479 Pectobacterium atrosepticum SCRI1043 2882260 YP_051283.1 CDS ECA3194 NC_004547.2 3575248 3576147 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 3575248..3576147 Pectobacterium atrosepticum SCRI1043 2882437 YP_051284.1 CDS ECA3195 NC_004547.2 3576161 3576568 R Similar to Yersinia pestis PsiE protein homolog PsiE or ypo3717 or y0025 SWALL:Q8ZAS3 (EMBL:AJ414158) (135 aa) fasta scores: E(): 2.3e-39, 75.55% id in 135 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri PsiE protein PsiE or b4030 or c5001 or sf4175 SWALL:AAN45596 (EMBL:J02812) (136 aa) fasta scores: E(): 1.9e-35, 71.53% id in 130 aa; phosphate-starvation-inducible protein PsiE complement(3576161..3576568) Pectobacterium atrosepticum SCRI1043 2882438 YP_051285.1 CDS thiD NC_004547.2 3576767 3577570 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(3576767..3577570) Pectobacterium atrosepticum SCRI1043 2884300 YP_051286.1 CDS thiM NC_004547.2 3577567 3578361 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(3577567..3578361) Pectobacterium atrosepticum SCRI1043 2884288 YP_051287.1 CDS ECA3198 NC_004547.2 3578861 3579880 D Similar to Escherichia coli hypothetical zinc-type alcohol dehydrogenase-like protein yjgb or b4269 SWALL:YJGB_ECOLI (SWALL:P27250) (339 aa) fasta scores: E(): 2.9e-112, 83.18% id in 339 aa, and to Salmonella typhimurium alcohol dehydrogenase yjgb or stm4486 SWALL:Q8ZK20 (EMBL:AE008910) (339 aa) fasta scores: E(): 6.8e-112, 83.48% id in 339 aa; zinc-binding dehydrogenase 3578861..3579880 Pectobacterium atrosepticum SCRI1043 2882439 YP_051288.1 CDS ECA3199 NC_004547.2 3580034 3580957 D Similar to Yersinia pestis HmsT or ypo0425 or y3756 SWALL:AAM87301 (EMBL:AF129277) (390 aa) fasta scores: E(): 1.1e-12, 28.21% id in 319 aa, and to Pseudomonas putida GGDEF domain protein pp3452 SWALL:AAN69054 (EMBL:AE016786) (363 aa) fasta scores: E(): 2.2e-12, 32.65% id in 245 aa; hypothetical protein 3580034..3580957 Pectobacterium atrosepticum SCRI1043 2881838 YP_051289.1 CDS ECA3200 NC_004547.2 3581411 3582463 R Similar to Listeria innocua hypothetical protein Lin1094 SWALL:Q92CS7 (EMBL:AL596167) (340 aa) fasta scores: E(): 1.5e-25, 30.51% id in 308 aa, and to Streptomyces coelicolor hypothetical protein sco3599 or sc66t3.10C SWALL:Q9XAK3 (EMBL:AL939117) (318 aa) fasta scores: E(): 2e-09, 30.41% id in 263 aa; hypothetical protein complement(3581411..3582463) Pectobacterium atrosepticum SCRI1043 2881839 YP_051290.1 CDS ECA3201 NC_004547.2 3582508 3583245 R Similar to Ralstonia solanacearum probable transmembrane protein rsp0190 or rs04702 SWALL:Q8XTC3 (EMBL:AL646077) (263 aa) fasta scores: E(): 1.9e-51, 58.87% id in 248 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2847 SWALL:Q9HZZ6 (EMBL:AE004711) (249 aa) fasta scores: E(): 1.7e-40, 46.69% id in 242 aa; hypothetical protein complement(3582508..3583245) Pectobacterium atrosepticum SCRI1043 2881840 YP_051291.1 CDS ECA3202 NC_004547.2 3583505 3584407 D Similar to Ralstonia solanacearum probable DNA-binding transcriptional regulatory transcription regulator protein rsc1196 or rs05728 SWALL:Q8Y048 (EMBL:AL646063) (306 aa) fasta scores: E(): 3.9e-42, 42.76% id in 297 aa, and to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1077 SWALL:Q8YB24 (EMBL:AE009740) (294 aa) fasta scores: E(): 2.7e-38, 39.51% id in 291 aa; LysR family transcriptional regulator 3583505..3584407 Pectobacterium atrosepticum SCRI1043 2881434 YP_051292.1 CDS ECA3203 NC_004547.2 3584423 3585196 R Similar to Agrobacterium tumefaciens Agr_c_1524p agr_c_1524 SWALL:Q8U5H6 (EMBL:AE008016) (265 aa) fasta scores: E(): 3.8e-31, 41.78% id in 213 aa, and to Rhizobium meliloti hypothetical protein r00954 or smc00096 SWALL:Q92KJ4 (EMBL:AL591785) (245 aa) fasta scores: E(): 1.2e-30, 37.94% id in 253 aa; hypothetical protein complement(3584423..3585196) Pectobacterium atrosepticum SCRI1043 2881435 YP_051293.1 CDS ECA3204 NC_004547.2 3585401 3585751 R hypothetical protein complement(3585401..3585751) Pectobacterium atrosepticum SCRI1043 2881436 YP_051294.1 CDS ECA3205 NC_004547.2 3586091 3587221 D Similar to Bacillus sphaericus penicillin acylase SWALL:PAC_BACSH (SWALL:P12256) (338 aa) fasta scores: E(): 2.3e-07, 25.4% id in 307 aa, and to Agrobacterium tumefaciens choloylglycine hydrolase family protein atu4586 or agr_l_573 SWALL:Q8U768 (EMBL:AE009386) (355 aa) fasta scores: E(): 6.1e-56, 60.49% id in 367 aa, and to Clostridium perfringens choloylglycine hydrolase cbh or cpe0709 SWALL:CBH_CLOPE (SWALL:P54965) (329 aa) fasta scores: E(): 2.1e-05, 25.07% id in 315 aa; exported choloylglycine hydrolase 3586091..3587221 Pectobacterium atrosepticum SCRI1043 2881437 YP_051295.1 CDS ECA3206 NC_004547.2 3587320 3587535 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or Sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 3.1e-15, 71.21% id in 66 aa. Also similar to ECA0513 (91.139% id. in 79 aa overlap), and to ECA0966 (85.714% id. in 70 aa overlap), and to ECA0686 (76.119% id. in 67 aa overlap.); transcriptional regulator complement(3587320..3587535) Pectobacterium atrosepticum SCRI1043 2881355 YP_051296.1 CDS ECA3207 NC_004547.2 3587836 3588690 R Similar to Yersinia pestis hypothetical protein ypo1734 or y2574 SWALL:AAM86129 (EMBL:AJ414150) (283 aa) fasta scores: E(): 2.6e-76, 70.31% id in 283 aa, and to Shewanella oneidensis rio1/zk632.3/mj0444 family, so3973 SWALL:AAN56947 (EMBL:AE015828) (285 aa) fasta scores: E(): 4.1e-70, 65.37% id in 283 aa; hypothetical protein complement(3587836..3588690) Pectobacterium atrosepticum SCRI1043 2881356 YP_051297.1 CDS guaA NC_004547.2 3589055 3590632 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(3589055..3590632) Pectobacterium atrosepticum SCRI1043 2883706 YP_051298.1 CDS guaB NC_004547.2 3590739 3592205 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(3590739..3592205) Pectobacterium atrosepticum SCRI1043 2883707 YP_051299.1 CDS xseA NC_004547.2 3592378 3593766 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 3592378..3593766 Pectobacterium atrosepticum SCRI1043 2882644 YP_051300.1 CDS prt1 NC_004547.2 3594004 3595047 D Similar to Erwinia carotovora extracellular metalloprotease precursor Prt1 SWALL:PRT1_ERWCA (SWALL:Q99132) (347 aa) fasta scores: E(): 1.4e-136, 95.1% id in 347 aa; extracellular metalloprotease 3594004..3595047 Pectobacterium atrosepticum SCRI1043 2882533 YP_051301.1 CDS ECA3212 NC_004547.2 3595044 3595388 D hypothetical protein 3595044..3595388 Pectobacterium atrosepticum SCRI1043 2881357 YP_051302.1 CDS ECA3213 NC_004547.2 3595535 3596425 R Similar to Rhizobium meliloti transcriptional regulator, AraC family protein rb0963 or smb21385 SWALL:Q92UX2 (EMBL:AL603645) (311 aa) fasta scores: E(): 9.2e-43, 42.9% id in 296 aa, and to Agrobacterium tumefaciens transcriptional regulator, AraC family atu2021 or agr_c_3663 SWALL:Q8UDU8 (EMBL:AE009153) (301 aa) fasta scores: E(): 3.2e-32, 36.17% id in 282 aa; AraC family transcriptional regulator complement(3595535..3596425) Pectobacterium atrosepticum SCRI1043 2882094 YP_051303.1 CDS ECA3214 NC_004547.2 3596586 3597341 D Similar to Bacillus subtilis 3-oxoacyl-[acyl-carrier protein] reductase FabG SWALL:FABG_BACSU (SWALL:P51831) (246 aa) fasta scores: E(): 4.4e-24, 38.24% id in 251 aa, and to Ralstonia solanacearum probable dehydrogenase/reductase oxidoreductase protein rsc1730 or rs02918 SWALL:Q8XYM8 (EMBL:AL646066) (256 aa) fasta scores: E(): 1.8e-51, 59.91% id in 247 aa; short chain dehydrogenase 3596586..3597341 Pectobacterium atrosepticum SCRI1043 2882095 YP_051304.1 CDS ECA3215 NC_004547.2 3597445 3598404 R Similar to Rhizobium meliloti hypothetical transmembrane protein smc02895 r00220 or smc02895 SWALL:Q92SX9 (EMBL:AL591782) (314 aa) fasta scores: E(): 1.8e-13, 25.72% id in 311 aa, and to Rickettsia prowazekii hypothetical protein Rp372 rp372 SWALL:Q9ZDF7 (EMBL:AJ235271) (323 aa) fasta scores: E(): 1.9e-13, 25.97% id in 308 aa; transporter complement(3597445..3598404) Pectobacterium atrosepticum SCRI1043 2882096 YP_051305.1 CDS engA NC_004547.2 3598497 3599984 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(3598497..3599984) Pectobacterium atrosepticum SCRI1043 2884917 YP_051306.1 CDS ECA3217 NC_004547.2 3600129 3601310 R with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL complement(3600129..3601310) Pectobacterium atrosepticum SCRI1043 2882097 YP_051307.1 CDS ECA3218 NC_004547.2 3601321 3601941 R Similar to Yersinia pestis membrane protein ypo2877 or y1355 SWALL:Q8ZCT7 (EMBL:AJ414154) (211 aa) fasta scores: E(): 3.2e-42, 61.13% id in 211 aa, and to Escherichia coli O6 hypothetical protein yfgm or c3035 SWALL:AAN81485 (EMBL:AE016764) (206 aa) fasta scores: E(): 1.8e-40, 57.56% id in 205 aa; hypothetical protein complement(3601321..3601941) Pectobacterium atrosepticum SCRI1043 2882191 YP_051308.1 CDS hisS NC_004547.2 3601955 3603229 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(3601955..3603229) Pectobacterium atrosepticum SCRI1043 2881852 YP_051309.1 CDS ispG NC_004547.2 3603367 3604488 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(3603367..3604488) Pectobacterium atrosepticum SCRI1043 2882186 YP_051310.1 CDS ECA3221 NC_004547.2 3604529 3605527 R Similar to Salmonella typhimurium paral membrane protein yfga or stm2524 SWALL:Q8ZN53 (EMBL:AE008814) (334 aa) fasta scores: E(): 6.4e-54, 58.2% id in 335 aa, and to Escherichia coli O6 hypothetical protein yfga or c3038 SWALL:AAN81488 (EMBL:AE016764) (335 aa) fasta scores: E(): 8.1e-54, 58.03% id in 336 aa; cytoskeletal protein RodZ complement(3604529..3605527) Pectobacterium atrosepticum SCRI1043 2882192 YP_051311.1 CDS ECA3222 NC_004547.2 3605517 3606254 R Similar to Pseudomonas aeruginosa PilF protein SWALL:Q51526 (EMBL:L49434) (198 aa) fasta scores: E(): 4.5e-07, 28.4% id in 169 aa, and to Yersinia pestis fimbrial biogenesis protein ypo2881 or y1351 SWALL:Q8ZCT4 (EMBL:AJ414154) (249 aa) fasta scores: E(): 4.2e-62, 71.91% id in 235 aa; hypothetical protein complement(3605517..3606254) Pectobacterium atrosepticum SCRI1043 2882193 YP_051312.1 CDS ECA3223 NC_004547.2 3606505 3607701 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(3606505..3607701) Pectobacterium atrosepticum SCRI1043 2881550 YP_051313.1 CDS ndk NC_004547.2 3608005 3608433 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(3608005..3608433) Pectobacterium atrosepticum SCRI1043 2885655 YP_051314.1 CDS ECA3225 NC_004547.2 3608793 3610373 D Similar to Klebsiella pneumoniae PTS system, alpha-glucoside-specific IIbc component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 2e-59, 37.28% id in 531 aa, and to Bacillus subtilis PTS system, arbutin-like IIbc component GlvC or GlvCB or Glv-2 SWALL:PTIB_BACSU (SWALL:P54715) (527 aa) fasta scores: E(): 1.9e-58, 35.79% id in 528 aa; PTS system alpha-glucoside-specific transporter subunit IIBC 3608793..3610373 Pectobacterium atrosepticum SCRI1043 2881551 YP_051315.1 CDS ECA3226 NC_004547.2 3610387 3611748 D Similar to Klebsiella pneumoniae 6-phospho-alpha-glucosidase AglB SWALL:AGLB_KLEPN (SWALL:Q9AGA6) (440 aa) fasta scores: E(): 2.2e-85, 50.11% id in 441 aa, and to Escherichia coli probable 6-phospho-alpha-glucosidase GlvG or b3681 SWALL:GLVG_ECOLI (SWALL:P31450) (212 aa) fasta scores: E(): 4.9e-41, 53.81% id in 210 aa; 6-phospho-alpha-glucosidase 3610387..3611748 Pectobacterium atrosepticum SCRI1043 2881552 YP_051316.1 CDS sseA NC_004547.2 3611852 3612721 D catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 3611852..3612721 Pectobacterium atrosepticum SCRI1043 2884352 YP_051317.1 CDS ECA3228 NC_004547.2 3612789 3613577 D Similar to Oceanobacillus iheyensis transcriptional regulator ob0613 SWALL:BAC12569 (EMBL:AP004595) (282 aa) fasta scores: E(): 6e-11, 28.13% id in 263 aa, and to Haemophilus influenzae hypothetical protein Hi0143 hi0143 SWALL:Y143_HAEIN (SWALL:P44540) (288 aa) fasta scores: E(): 2.8e-09, 26.1% id in 226 aa; transcriptional regulator 3612789..3613577 Pectobacterium atrosepticum SCRI1043 2881618 YP_051318.1 CDS sseB NC_004547.2 3613612 3614406 R enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB complement(3613612..3614406) Pectobacterium atrosepticum SCRI1043 2884353 YP_051319.1 CDS pepB NC_004547.2 3614501 3615811 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase complement(3614501..3615811) Pectobacterium atrosepticum SCRI1043 2885062 YP_051320.1 CDS ECA3231 NC_004547.2 3616073 3616273 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yfhj or b2524 or z3791 or ecs3390 or sf2571 SWALL:AAN44070 (EMBL:M88654) (66 aa) fasta scores: E(): 3.5e-23, 83.33% id in 66 aa, and to Yersinia pestis hypothetical protein ypo2890 or y1341 SWALL:Q8ZCS7 (EMBL:AJ414154) (66 aa) fasta scores: E(): 6.1e-20, 76.56% id in 64 aa; hypothetical protein complement(3616073..3616273) Pectobacterium atrosepticum SCRI1043 2881619 YP_051321.1 CDS fdx NC_004547.2 3616295 3616630 R Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri ferredoxin, 2fe-2s Fdx or b2525 or z3792 or ecs3391 or sf2572 SWALL:AAN44071 (EMBL:M88654) (111 aa) fasta scores: E(): 6.7e-39, 84.68% id in 111 aa; (2Fe-2S) ferredoxin complement(3616295..3616630) Pectobacterium atrosepticum SCRI1043 2885601 YP_051322.1 CDS hscA NC_004547.2 3616632 3618482 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(3616632..3618482) Pectobacterium atrosepticum SCRI1043 2884528 YP_051323.1 CDS hscB NC_004547.2 3618557 3619075 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(3618557..3619075) Pectobacterium atrosepticum SCRI1043 2884529 YP_051324.1 CDS iscA NC_004547.2 3619147 3619470 R forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein complement(3619147..3619470) Pectobacterium atrosepticum SCRI1043 2881620 YP_051325.1 CDS icsU NC_004547.2 3619552 3619938 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri NifU-like protein NifU or IcsU or b2529 or c3055 or z3796 or ecs3395 or sf2576 SWALL:NIFU_ECOLI (SWALL:P77310) (128 aa) fasta scores: E(): 1.5e-44, 92.18% id in 128 aa, and to Xenorhabdus nematophilus iron-binding protein IscU iscU SWALL:AAN17746 (EMBL:AY138456) (128 aa) fasta scores: E(): 1.1e-44, 91.4% id in 128 aa; scaffold protein complement(3619552..3619938) Pectobacterium atrosepticum SCRI1043 2882764 YP_051326.1 CDS iscS NC_004547.2 3619963 3621177 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(3619963..3621177) Pectobacterium atrosepticum SCRI1043 2881468 YP_051327.1 CDS ECA3238 NC_004547.2 3621459 3621953 R regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR complement(3621459..3621953) Pectobacterium atrosepticum SCRI1043 2881621 YP_051328.1 CDS ECA3239 NC_004547.2 3622058 3622783 R Similar to Yersinia pestis SpoU-family rRNA methylase ypo2898 or y1332 SWALL:Q8ZCR9 (EMBL:AJ414154) (257 aa) fasta scores: E(): 1.2e-78, 85.77% id in 239 aa, and to Escherichia coli O157:H7 hypothetical tRNA/rRNA methyltransferase yfhq yfhq or z3799 or ecs3398 SWALL:YFHQ_ECO57 (SWALL:Q8XA83) (245 aa) fasta scores: E(): 3.7e-74, 82.77% id in 238 aa; RNA methyltransferase complement(3622058..3622783) Pectobacterium atrosepticum SCRI1043 2881410 YP_051329.1 CDS suhB NC_004547.2 3622920 3623723 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 inositol-1-monophosphatase SuhB or SsyA or b2533 or c3059 or z3800 or ecs3399 SWALL:SUHB_ECOLI (SWALL:P22783) (267 aa) fasta scores: E(): 2.4e-90, 84.64% id in 267 aa; inositol monophosphatase 3622920..3623723 Pectobacterium atrosepticum SCRI1043 2884330 YP_051330.1 CDS ECA3241 NC_004547.2 3623896 3625014 D Similar to Yersinia pestis solute-binding periplasmic protein of ABC transporter y3342 SWALL:AAM86892 (EMBL:AE013935) (369 aa) fasta scores: E(): 6.7e-37, 35.22% id in 335 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3391 or agr_l_2862 SWALL:Q8UAI2 (EMBL:AE009269) (377 aa) fasta scores: E(): 2.4e-36, 32.24% id in 366 aa; ABC transporter substrate binding protein 3623896..3625014 Pectobacterium atrosepticum SCRI1043 2881411 YP_051331.1 CDS ECA3242 NC_004547.2 3625021 3626103 D Similar to Yersinia pestis feccd-family membrane transport protein ypo1311 or yiub or y2874 SWALL:Q8ZGI6 (EMBL:AJ414147) (360 aa) fasta scores: E(): 2.2e-108, 81.66% id in 360 aa, and to Salmonella typhimurium ABC transport protein stm0770 SWALL:Q8ZQS4 (EMBL:AE008731) (359 aa) fasta scores: E(): 2.2e-94, 72.06% id in 358 aa; ABC transporter permease 3625021..3626103 Pectobacterium atrosepticum SCRI1043 2881412 YP_051332.1 CDS ECA3243 NC_004547.2 3626100 3626900 D Similar to Escherichia coli ferric-enterobactin-transport protein SWALL:Q8VR78 (EMBL:AF447814) (255 aa) fasta scores: E(): 7.9e-59, 67.05% id in 255 aa, and to Yersinia pestis siderophore ABC transporter, ATP-binding subunit ypo1312 or yiuc or y2873 SWALL:AAM86424 (EMBL:AJ414147) (262 aa) fasta scores: E(): 1.4e-74, 81.15% id in 260 aa; ferric-enterobactin ABC transporter ATP-binding protein 3626100..3626900 Pectobacterium atrosepticum SCRI1043 2881255 YP_051333.1 CDS ECA3244 NC_004547.2 3626957 3627280 R hypothetical protein complement(3626957..3627280) Pectobacterium atrosepticum SCRI1043 2881256 YP_051334.1 CDS ECA3245 NC_004547.2 3627365 3629032 R Similar to Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 4.9e-43, 36.94% id in 536 aa, and to Ralstonia solanacearum methyl-accepting chemotaxis transducer transmembrane protein rsp1027 or rs02364 SWALL:Q8XR41 (EMBL:AL646082) (524 aa) fasta scores: E(): 4.5e-49, 39.36% id in 508 aa; methyl-accepting chemotaxis protein complement(3627365..3629032) Pectobacterium atrosepticum SCRI1043 2881257 YP_051335.1 CDS ECA3246 NC_004547.2 3629488 3630615 R Similar to Yersinia pestis periplasmic substrate-binding transport protein ypo1310 SWALL:Q8ZGI7 (EMBL:AJ414147) (381 aa) fasta scores: E(): 7.2e-48, 35.13% id in 370 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3391 or agr_l_2862 SWALL:Q8UAI2 (EMBL:AE009269) (377 aa) fasta scores: E(): 2e-86, 58.22% id in 371 aa; periplasmic substrate-binding transport protein complement(3629488..3630615) Pectobacterium atrosepticum SCRI1043 2881258 YP_051336.1 CDS ECA3247 NC_004547.2 3630734 3631822 R Similar to Yersinia pestis membrane protein ypo2901 SWALL:Q8ZCR7 (EMBL:AJ414154) (340 aa) fasta scores: E(): 3.8e-43, 55.95% id in 361 aa, and to Salmonella typhimurium inner membrane protein stm2551 SWALL:Q8ZN38 (EMBL:AE008816) (328 aa) fasta scores: E(): 5.7e-35, 50.28% id in 352 aa; hypothetical protein complement(3630734..3631822) Pectobacterium atrosepticum SCRI1043 2884576 YP_051337.1 CDS ECA3248 NC_004547.2 3631813 3632472 R Similar to Yersinia pestis exported protein ypo2902 or y1329 SWALL:Q8ZCR6 (EMBL:AJ414154) (224 aa) fasta scores: E(): 8.7e-56, 65.15% id in 221 aa, and to Salmonella typhi exported protein sty2799 SWALL:Q8Z4M5 (EMBL:AL627275) (212 aa) fasta scores: E(): 5.3e-44, 57.35% id in 204 aa; hypothetical protein complement(3631813..3632472) Pectobacterium atrosepticum SCRI1043 2884577 YP_051338.1 CDS hcaT NC_004547.2 3632517 3633677 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter complement(3632517..3633677) Pectobacterium atrosepticum SCRI1043 2883279 YP_051339.1 CDS glyA NC_004547.2 3634134 3635387 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(3634134..3635387) Pectobacterium atrosepticum SCRI1043 2882141 YP_051340.1 CDS hmpX NC_004547.2 3635748 3636938 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 3635748..3636938 Pectobacterium atrosepticum SCRI1043 2881853 YP_051341.1 CDS paeY NC_004547.2 3637577 3639235 D Similar to Erwinia chrysanthemi pectin acetylesterase PaeY SWALL:O32563 (EMBL:Y09828) (551 aa) fasta scores: E(): 8.8e-135, 61.07% id in 542 aa; pectin acetylesterase 3637577..3639235 Pectobacterium atrosepticum SCRI1043 2881732 YP_051342.1 CDS pemA NC_004547.2 3639338 3640444 D Similar to Erwinia chrysanthemi pectinesterase a precursor PemA or Pem SWALL:PMEA_ERWCH (SWALL:P07863) (366 aa) fasta scores: E(): 3.5e-98, 70.47% id in 359 aa; pectinesterase A 3639338..3640444 Pectobacterium atrosepticum SCRI1043 2885060 YP_051343.1 CDS glnB NC_004547.2 3640534 3640872 R indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; nitrogen regulatory protein P-II 1 complement(3640534..3640872) Pectobacterium atrosepticum SCRI1043 2881762 YP_051344.1 CDS ECA3255 NC_004547.2 3641032 3642369 R Similar to Yersinia pestis two-component system response regulator ypo2914 SWALL:Q8ZCQ7 (EMBL:AJ414154) (445 aa) fasta scores: E(): 1.3e-149, 91.91% id in 445 aa, and to Salmonella typhimurium transcriptional regulator of two-component regulator protein yfha or stm2562 SWALL:Q8ZN32 (EMBL:AE008816) (445 aa) fasta scores: E(): 1.3e-142, 86.96% id in 445 aa; two-component system response regulator complement(3641032..3642369) Pectobacterium atrosepticum SCRI1043 2884578 YP_051345.1 CDS ECA3256 NC_004547.2 3642366 3643202 R Similar to Yersinia pestis lipoprotein ypo2915 SWALL:Q8ZCQ6 (EMBL:AJ414154) (331 aa) fasta scores: E(): 7.9e-37, 45.45% id in 253 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yfhg or b2555 or z3831 or ecs3421 or sf2602 SWALL:YFHG_ECOLI (SWALL:P37328) (237 aa) fasta scores: E(): 3.6e-30, 45.61% id in 228 aa; hypothetical protein complement(3642366..3643202) Pectobacterium atrosepticum SCRI1043 2885128 YP_051346.1 CDS ECA3257 NC_004547.2 3643221 3644657 R Similar to Yersinia pestis two-component system sensor kinase ypo2916 or y1313 SWALL:Q8ZCQ5 (EMBL:AJ414154) (483 aa) fasta scores: E(): 5.4e-148, 79.91% id in 478 aa, and to Salmonella typhimurium sensory kinase in regulatory system yfhk or stm2564 SWALL:Q8ZN30 (EMBL:AE008816) (480 aa) fasta scores: E(): 6.7e-134, 73.67% id in 471 aa; two-component system sensor kinase complement(3643221..3644657) Pectobacterium atrosepticum SCRI1043 2885129 YP_051347.1 CDS purL NC_004547.2 3645506 3649390 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(3645506..3649390) Pectobacterium atrosepticum SCRI1043 2881272 YP_051348.1 CDS ECA3259 NC_004547.2 3649670 3651115 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 3649670..3651115 Pectobacterium atrosepticum SCRI1043 2885130 YP_051349.1 CDS ECA3260 NC_004547.2 3651263 3651787 R Similar to Escherichia coli, and Shigella flexneri hypothetical protein yfhc or b2559 or sf2606 SWALL:AAN44103 (EMBL:X72336) (178 aa) fasta scores: E(): 7.7e-49, 74.68% id in 158 aa, and to Salmonella typhimurium, and Salmonella typhi cytosine/adenosine deaminase yfhc or stm2568 or sty2814 SWALL:Q8XGY4 (EMBL:AE008817) (183 aa) fasta scores: E(): 1.1e-48, 75.31% id in 158 aa; tRNA-specific adenosine deaminase complement(3651263..3651787) Pectobacterium atrosepticum SCRI1043 2883231 YP_051350.1 CDS ECA3261 NC_004547.2 3651837 3652475 R Similar to Yersinia pestis membrane protein ypo2924 SWALL:Q8ZCP9 (EMBL:AJ414154) (215 aa) fasta scores: E(): 1.7e-62, 74.27% id in 206 aa, and to Salmonella typhimurium putatative phosphoserine phosphatase yfhb or stm2569 SWALL:Q8ZN27 (EMBL:AE008817) (211 aa) fasta scores: E(): 3e-62, 71.01% id in 207 aa; hypothetical protein complement(3651837..3652475) Pectobacterium atrosepticum SCRI1043 2883232 YP_051351.1 CDS murQ NC_004547.2 3652523 3653449 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(3652523..3653449) Pectobacterium atrosepticum SCRI1043 2883233 YP_051352.1 CDS ECA3263 NC_004547.2 3653727 3654416 D Similar to Pseudomonas putida conserved hypothetical protein pp0164 SWALL:AAN65797 (EMBL:AE016774) (213 aa) fasta scores: E(): 5.6e-51, 59.9% id in 207 aa, and to Vibrio vulnificus predicted periplasmic protein vv21126 SWALL:AAO08027 (EMBL:AE016812) (237 aa) fasta scores: E(): 2e-31, 44.87% id in 205 aa; hypothetical protein 3653727..3654416 Pectobacterium atrosepticum SCRI1043 2883234 YP_051353.1 CDS ECA3264 NC_004547.2 3654426 3656378 D Similar to Pseudomonas putida GGDEF domain protein pp0165 SWALL:AAN65798 (EMBL:AE016774) (648 aa) fasta scores: E(): 8e-140, 56.7% id in 649 aa, and to Vibrio vulnificus fog: EAL domain protein vv21127 SWALL:AAO08028 (EMBL:AE016812) (639 aa) fasta scores: E(): 2.7e-33, 26.2% id in 641 aa; signaling membrane protein 3654426..3656378 Pectobacterium atrosepticum SCRI1043 2885299 YP_051354.1 CDS ECA3265 NC_004547.2 3656500 3656844 R hypothetical protein complement(3656500..3656844) Pectobacterium atrosepticum SCRI1043 2885300 YP_051355.1 CDS ECA3266 NC_004547.2 3656910 3670586 R Similar to Ralstonia solanacearum hemagglutinin/hemolysin-related protein rsp1180 or rs05070 SWALL:Q8XQP2 (EMBL:AL646083) (4106 aa) fasta scores: E(): 3.1e-134, 29.53% id in 4320 aa, and to Aeromonas salmonicida Rtx protein Asx SWALL:Q9L800 (EMBL:AF218037) (2747 aa) fasta scores: E(): 1.3e-47, 28.2% id in 2822 aa; hemagglutinin/hemolysin-like protein complement(3656910..3670586) Pectobacterium atrosepticum SCRI1043 2885301 YP_051356.1 CDS aggA NC_004547.2 3670963 3672315 D Similar to Pseudomonas putida agglutination protein precursor AggA SWALL:Q52018 (EMBL:M64540) (452 aa) fasta scores: E(): 4e-73, 47.27% id in 440 aa, and to Vibrio cholerae agglutination protein vc1621 SWALL:Q9KRL6 (EMBL:AE004240) (445 aa) fasta scores: E(): 1.6e-51, 36.58% id in 421 aa; agglutination protein 3670963..3672315 Pectobacterium atrosepticum SCRI1043 2883213 YP_051357.1 CDS ECA3268 NC_004547.2 3672395 3674611 D Similar to Actinobacillus pleuropneumoniae Rtx-I toxin determinant B Apxib or clyib or hlyib or appB SWALL:RT1B_ACTPL (SWALL:P26760) (707 aa) fasta scores: E(): 1.1e-55, 28.05% id in 695 aa, and to Pseudomonas putida toxin secretion ATP-binding protein pp0167 SWALL:AAN65800 (EMBL:AE016774) (718 aa) fasta scores: E(): 1.1e-188, 69.83% id in 706 aa, and to Pasteurella haemolytica leukotoxin secretion ATP-binding protein lktB SWALL:HLYB_PASHA (SWALL:P16532) (708 aa) fasta scores: E(): 1.1e-55, 27.84% id in 686 aa; toxin secretion ATP-binding protein 3672395..3674611 Pectobacterium atrosepticum SCRI1043 2884561 YP_051358.1 CDS ECA3269 NC_004547.2 3674598 3675959 D Similar to Rhizobium leguminosarum PrsE protein prsE SWALL:O05694 (EMBL:Y12758) (435 aa) fasta scores: E(): 4.6e-27, 29.72% id in 434 aa, and to Pseudomonas putida HlyD family secretion protein pp0166 SWALL:AAN65799 (EMBL:AE016774) (458 aa) fasta scores: E(): 1.9e-103, 65.19% id in 454 aa; HlyD family secretion protein 3674598..3675959 Pectobacterium atrosepticum SCRI1043 2884562 YP_051359.1 CDS ECA3270 NC_004547.2 3676002 3677516 R Similar to Rhizobium meliloti hypothetical protein r00959 or smc00038 SWALL:Q92KJ3 (EMBL:AL591785) (772 aa) fasta scores: E(): 1e-48, 35.35% id in 461 aa, and to Xanthomonas campestris c-di-gmp phosphodiesterase A PdeA or xcc1865 SWALL:Q8P9J8 (EMBL:AE012289) (726 aa) fasta scores: E(): 1.1e-41, 31.81% id in 462 aa; hypothetical protein complement(3676002..3677516) Pectobacterium atrosepticum SCRI1043 2884563 YP_051360.1 CDS ECA3271 NC_004547.2 3678304 3679095 R in Escherichia coli this protein is involved in flagellar function; diguanylate phosphodiesterase complement(3678304..3679095) Pectobacterium atrosepticum SCRI1043 2884564 YP_051361.1 CDS ECA3272 NC_004547.2 3679113 3679367 R hypothetical protein complement(3679113..3679367) Pectobacterium atrosepticum SCRI1043 2882588 YP_051362.1 CDS ECA3273 NC_004547.2 3679566 3679826 D Similar to Escherichia coli O6 ferredoxin-like protein yfhl or c3086 SWALL:AAN81535 (EMBL:AE016764) (86 aa) fasta scores: E(): 4.5e-28, 82.55% id in 86 aa, and to Salmonella typhimurium ferredoxin yfhl or stm2576 SWALL:Q8ZN20 (EMBL:AE008817) (86 aa) fasta scores: E(): 2.3e-27, 79.06% id in 86 aa; ferredoxin 3679566..3679826 Pectobacterium atrosepticum SCRI1043 2882589 YP_051363.1 CDS acpS NC_004547.2 3679845 3680225 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3679845..3680225) Pectobacterium atrosepticum SCRI1043 2884689 YP_051364.1 CDS pdxJ NC_004547.2 3680225 3680956 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(3680225..3680956) Pectobacterium atrosepticum SCRI1043 2882129 YP_051365.1 CDS recO NC_004547.2 3681037 3681774 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(3681037..3681774) Pectobacterium atrosepticum SCRI1043 2885107 YP_051366.1 CDS era NC_004547.2 3681786 3682691 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(3681786..3682691) Pectobacterium atrosepticum SCRI1043 2884535 YP_051367.1 CDS rnc NC_004547.2 3682688 3683368 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(3682688..3683368) Pectobacterium atrosepticum SCRI1043 2885047 YP_051368.1 CDS lepB NC_004547.2 3683661 3684626 R catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I complement(3683661..3684626) Pectobacterium atrosepticum SCRI1043 2883503 YP_051369.1 CDS lepA NC_004547.2 3684643 3686442 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3684643..3686442) Pectobacterium atrosepticum SCRI1043 2883632 YP_051370.1 CDS rseC NC_004547.2 3686739 3687191 R involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC complement(3686739..3687191) Pectobacterium atrosepticum SCRI1043 2884454 YP_051371.1 CDS rseB NC_004547.2 3687188 3688150 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE complement(3687188..3688150) Pectobacterium atrosepticum SCRI1043 2884453 YP_051372.1 CDS rseA NC_004547.2 3688150 3688797 R Similar to Escherichia coli, and Escherichia coli O6 sigma-E factor negative regulatory protein RseA or MclA or b2572 or c3096 SWALL:RSEA_ECOLI (SWALL:P38106) (216 aa) fasta scores: E(): 9.8e-48, 62.21% id in 217 aa; anti-RNA polymerase sigma factor SigE complement(3688150..3688797) Pectobacterium atrosepticum SCRI1043 2884452 YP_051373.1 CDS rpoE NC_004547.2 3688857 3689432 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(3688857..3689432) Pectobacterium atrosepticum SCRI1043 2884483 YP_051374.1 CDS nadB NC_004547.2 3689812 3691413 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3689812..3691413 Pectobacterium atrosepticum SCRI1043 2885166 YP_051375.1 CDS ECA3286 NC_004547.2 3691502 3692248 R Similar to Escherichia coli O157:H7 enzyme yfic or z3857 or ecs3441 SWALL:Q8XA22 (EMBL:AE005488) (285 aa) fasta scores: E(): 5.8e-52, 58.4% id in 238 aa, and to Salmonella typhimurium transferase yfic or stm2642 SWALL:Q8ZMX8 (EMBL:AE008820) (245 aa) fasta scores: E(): 9.4e-52, 57.14% id in 238 aa; hypothetical protein complement(3691502..3692248) Pectobacterium atrosepticum SCRI1043 2882590 YP_051376.1 CDS srmB NC_004547.2 3692383 3693708 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 3692383..3693708 Pectobacterium atrosepticum SCRI1043 2884355 YP_051377.1 CDS ECA3288 NC_004547.2 3693778 3694161 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(3693778..3694161) Pectobacterium atrosepticum SCRI1043 2885183 YP_051378.1 CDS ung NC_004547.2 3694571 3695257 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 3694571..3695257 Pectobacterium atrosepticum SCRI1043 2882935 YP_051379.1 CDS ECA3290 NC_004547.2 3695855 3696739 D Similar to Escherichia coli IroE protein SWALL:Q93K72 (EMBL:X16664) (318 aa) fasta scores: E(): 2e-18, 28.94% id in 304 aa, and to Campylobacter jejuni periplasmic protein cj1376 SWALL:Q9PMS4 (EMBL:AL139078) (269 aa) fasta scores: E(): 1.9e-19, 32.45% id in 265 aa; hypothetical protein 3695855..3696739 Pectobacterium atrosepticum SCRI1043 2885184 YP_051380.1 CDS gltX NC_004547.2 3696813 3698228 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(3696813..3698228) Pectobacterium atrosepticum SCRI1043 2882140 YP_051381.1 CDS ECA3292 NC_004547.2 3699110 3700216 R Similar to Caulobacter crescentus fmn oxidoreductase cc2129 SWALL:Q9A6G5 (EMBL:AE005885) (363 aa) fasta scores: E(): 8.2e-85, 61.14% id in 368 aa, and to Streptomyces coelicolor oxidoreduxtase sco4297 or scd95a.30 SWALL:Q9KXU4 (EMBL:AL939119) (376 aa) fasta scores: E(): 2.7e-75, 55.31% id in 367 aa; oxidoreductase complement(3699110..3700216) Pectobacterium atrosepticum SCRI1043 2885185 YP_051382.1 CDS ECA3293 NC_004547.2 3700404 3701453 D Similar to Rhizobium loti norsolorinic acid reductase mll1952 SWALL:Q98JG7 (EMBL:AP002998) (348 aa) fasta scores: E(): 1.6e-69, 55.58% id in 349 aa, and to Xanthomonas campestris rhizopine catabolism protein moca or xcc3724 SWALL:Q8P4I3 (EMBL:AE012493) (356 aa) fasta scores: E(): 6.5e-46, 45.37% id in 346 aa; oxidoreductase 3700404..3701453 Pectobacterium atrosepticum SCRI1043 2885577 YP_051383.1 CDS ECA3294 NC_004547.2 3701538 3702119 D Similar to Rhizobium meliloti transcriptional regulator ra1038 or sma1887 SWALL:Q92Y50 (EMBL:AE007290) (200 aa) fasta scores: E(): 2.6e-23, 41.48% id in 188 aa, and to Agrobacterium tumefaciens transcriptional regulator, TetR family atu4217 or agr_l_1283 SWALL:Q8U882 (EMBL:AE009351) (199 aa) fasta scores: E(): 5.5e-23, 42.07% id in 183 aa; TetR family transcriptional regulator 3701538..3702119 Pectobacterium atrosepticum SCRI1043 2885578 YP_051384.1 CDS ECA3295 NC_004547.2 3702410 3702844 D Similar to Chlorobium tepidum hypothetical protein Ct0748 SWALL:Q8KEE1 (EMBL:AE012845) (133 aa) fasta scores: E(): 1.8e-18, 48% id in 125 aa, and to Nitrosomonas europaea hypothetical protein ne1276 SWALL:CAD85187 (EMBL:BX321860) (134 aa) fasta scores: E(): 1.9e-16, 43.54% id in 124 aa; hypothetical protein 3702410..3702844 Pectobacterium atrosepticum SCRI1043 2885579 YP_051385.1 CDS cysA NC_004547.2 3702925 3703917 R Similar to Escherichia coli sulfate/thiosulfate import ATP-binding protein CysA or b2422 SWALL:CYSA_ECOLI (SWALL:P16676) (365 aa) fasta scores: E(): 2e-56, 53.54% id in 353 aa; sulfate ABC transporter ATP-binding protein complement(3702925..3703917) Pectobacterium atrosepticum SCRI1043 2882242 YP_051386.1 CDS ECA3297 NC_004547.2 3703907 3704788 R Similar to Escherichia coli, and Escherichia coli O6 sulfate transport system permease protein CysW or b2423 or c2957 SWALL:CYSW_ECOLI (SWALL:P16702) (291 aa) fasta scores: E(): 1.3e-52, 47.93% id in 290 aa; sulfate ABC transporter permease complement(3703907..3704788) Pectobacterium atrosepticum SCRI1043 2885580 YP_051387.1 CDS cysU NC_004547.2 3704801 3705613 R Similar to Escherichia coli sulfate transport system permease protein CysU or CysT or b2424 SWALL:CYST_ECOLI (SWALL:P16701) (277 aa) fasta scores: E(): 4e-45, 46.21% id in 264 aa; sulfate ABC transporter permease complement(3704801..3705613) Pectobacterium atrosepticum SCRI1043 2881424 YP_051388.1 CDS sbp NC_004547.2 3705770 3706780 R Similar to Escherichia coli sulfate-binding protein precursor Sbp or b3917 SWALL:SUBI_ECOLI (SWALL:P06997) (329 aa) fasta scores: E(): 8e-77, 61.46% id in 327 aa; sulfate-binding protein complement(3705770..3706780) Pectobacterium atrosepticum SCRI1043 2884428 YP_051389.1 CDS cdaR NC_004547.2 3707103 3708260 R regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR complement(3707103..3708260) Pectobacterium atrosepticum SCRI1043 2881779 YP_051390.1 CDS degP NC_004547.2 3708493 3709959 R protease Do; required at high temperature; degrades damaged proteins; serine endoprotease complement(3708493..3709959) Pectobacterium atrosepticum SCRI1043 2881921 YP_051391.1 CDS dgt NC_004547.2 3710149 3711660 R forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase complement(3710149..3711660) Pectobacterium atrosepticum SCRI1043 2883364 YP_051392.1 CDS mtn NC_004547.2 3711890 3712588 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 3711890..3712588 Pectobacterium atrosepticum SCRI1043 2881745 YP_051393.1 CDS btuF NC_004547.2 3712592 3713431 D solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF 3712592..3713431 Pectobacterium atrosepticum SCRI1043 2882297 YP_051394.1 CDS ECA3305 NC_004547.2 3713650 3713928 D Similar to Escherichia coli hypothetical protein ymda precursor ymda or b1044 SWALL:YMDA_ECOLI (SWALL:P75917) (103 aa) fasta scores: E(): 3.1, 26.19% id in 84 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1040 SWALL:AAN42662 (EMBL:AE015132) (103 aa) fasta scores: E(): 4.2, 25% id in 84 aa; lipoprotein 3713650..3713928 Pectobacterium atrosepticum SCRI1043 2881825 YP_051395.1 CDS ECA3306 NC_004547.2 3714188 3714535 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yadr or b0156 or c0191 or z0167 or ecs0160 or sf0148 SWALL:YADR_ECOLI (SWALL:P37026) (114 aa) fasta scores: E(): 1.7e-38, 89.56% id in 115 aa, and to Yersinia pestis hypothetical protein Ypo3387 SWALL:Q8ZBM1 (EMBL:AJ414156) (114 aa) fasta scores: E(): 2.8e-37, 88.69% id in 115 aa; hypothetical protein complement(3714188..3714535) Pectobacterium atrosepticum SCRI1043 2881826 YP_051396.1 CDS hemL NC_004547.2 3714803 3716083 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3714803..3716083 Pectobacterium atrosepticum SCRI1043 2882212 YP_051397.1 CDS ECA3308 NC_004547.2 3716161 3717621 R Similar to Yersinia pestis similar to tyrosine aminotransferase ypo1960 SWALL:Q9ZC65 (EMBL:AL031866) (473 aa) fasta scores: E(): 1.5e-54, 34.53% id in 472 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4132 SWALL:Q9HWP9 (EMBL:AE004829) (471 aa) fasta scores: E(): 9e-61, 38.18% id in 474 aa; aminotransferase complement(3716161..3717621) Pectobacterium atrosepticum SCRI1043 2881827 YP_051398.1 CDS ECA3309 NC_004547.2 3717757 3718347 D Similar to Rhizobium meliloti hypothetical transmembrane protein smc01425 r02108 or smc01425 SWALL:Q92NS0 (EMBL:AL591789) (197 aa) fasta scores: E(): 2.7e-22, 39.68% id in 189 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2306 SWALL:Q9I1G9 (EMBL:AE004657) (205 aa) fasta scores: E(): 3e-20, 37.37% id in 198 aa; hypothetical protein 3717757..3718347 Pectobacterium atrosepticum SCRI1043 2885167 YP_051399.1 CDS fhuB NC_004547.2 3718385 3720403 R part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit complement(3718385..3720403) Pectobacterium atrosepticum SCRI1043 2882286 YP_051400.1 CDS fhuD NC_004547.2 3720396 3721319 R Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit complement(3720396..3721319) Pectobacterium atrosepticum SCRI1043 2882277 YP_051401.1 CDS fhuC NC_004547.2 3721339 3722136 R part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit complement(3721339..3722136) Pectobacterium atrosepticum SCRI1043 2882287 YP_051402.1 CDS mrcB NC_004547.2 3722451 3724928 R bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b complement(3722451..3724928) Pectobacterium atrosepticum SCRI1043 2882045 YP_051403.1 CDS ECA3314 NC_004547.2 3725031 3727511 R similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB complement(3725031..3727511) Pectobacterium atrosepticum SCRI1043 2885168 YP_051404.1 CDS ligT NC_004547.2 3727604 3728134 D Similar to Escherichia coli 2'-5' RNA ligase LigT or b0147 SWALL:LIGT_ECOLI (SWALL:P37025) (175 aa) fasta scores: E(): 8.7e-42, 60.57% id in 175 aa; 2'-5' RNA ligase 3727604..3728134 Pectobacterium atrosepticum SCRI1043 2883209 YP_051405.1 CDS sfsA NC_004547.2 3728155 3728859 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 3728155..3728859 Pectobacterium atrosepticum SCRI1043 2884401 YP_051406.1 CDS dksA NC_004547.2 3729128 3729583 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri dnak suppressor protein DksA or b0145 or c0178 or z0156 or ecs0149 or sf0137 SWALL:DKSA_ECOLI (SWALL:P18274) (151 aa) fasta scores: E(): 1.9e-52, 94.04% id in 151 aa; RNA polymerase-binding transcription factor 3729128..3729583 Pectobacterium atrosepticum SCRI1043 2883260 YP_051407.1 CDS ECA3318 NC_004547.2 3729711 3730679 D this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 3729711..3730679 Pectobacterium atrosepticum SCRI1043 2885169 YP_051408.1 CDS pcnB NC_004547.2 3730782 3732230 D Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase 3730782..3732230 Pectobacterium atrosepticum SCRI1043 2881375 YP_051409.1 CDS folK NC_004547.2 3732230 3732727 D Similar to Escherichia coli 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK or b0142 SWALL:HPPK_ECOLI (SWALL:P26281) (158 aa) fasta scores: E(): 1.5e-39, 67.08% id in 158 aa; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3732230..3732727 Pectobacterium atrosepticum SCRI1043 2885249 YP_051410.1 CDS panB NC_004547.2 3732844 3733638 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3732844..3733638 Pectobacterium atrosepticum SCRI1043 2881781 YP_051411.1 CDS panC NC_004547.2 3733793 3734647 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3733793..3734647 Pectobacterium atrosepticum SCRI1043 2881782 YP_051412.1 CDS panD NC_004547.2 3734665 3735045 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 3734665..3735045 Pectobacterium atrosepticum SCRI1043 2881847 YP_051413.1 CDS ECA3324 NC_004547.2 3735108 3735878 R Similar to Salmonella typhi ABC transporter integral membrane protein sty0195 SWALL:Q8Z9D6 (EMBL:AL627265) (256 aa) fasta scores: E(): 1.6e-82, 83.59% id in 256 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yadh or b0128 or c0157 or z0139 or ecs0132 or sf0125 SWALL:YADH_ECOLI (SWALL:P36880) (256 aa) fasta scores: E(): 1.3e-81, 82.42% id in 256 aa; ABC transporter complement(3735108..3735878) Pectobacterium atrosepticum SCRI1043 2885170 YP_051414.1 CDS ECA3325 NC_004547.2 3735875 3736813 R Similar to Yersinia pestis ABC transporter, ATP-binding protein ypo3406 or y0780 SWALL:AAM84367 (EMBL:AJ414157) (308 aa) fasta scores: E(): 3.2e-91, 85.25% id in 312 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein yadg or b0127 SWALL:YADG_ECOLI (SWALL:P36879) (308 aa) fasta scores: E(): 6.1e-88, 85.05% id in 301 aa; ABC transporter ATP-binding protein complement(3735875..3736813) Pectobacterium atrosepticum SCRI1043 2885723 YP_051415.1 CDS ECA3326 NC_004547.2 3736845 3737012 R Similar to Yersinia pestis hypothetical protein Ypo0143 SWALL:Q8ZJG5 (EMBL:AJ414141) (64 aa) fasta scores: E(): 0.019, 55.55% id in 36 aa; hypothetical protein complement(3736845..3737012) Pectobacterium atrosepticum SCRI1043 2885724 YP_051416.1 CDS ECA3327 NC_004547.2 3737076 3737717 D catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase 3737076..3737717 Pectobacterium atrosepticum SCRI1043 2885725 YP_051417.2 CDS hpt NC_004547.2 3737777 3738310 R Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase complement(3737777..3738310) Pectobacterium atrosepticum SCRI1043 2885421 YP_051418.1 CDS ECA3329 NC_004547.2 3738463 3738897 D Similar to Pasteurella multocida hypothetical protein Pm1553 SWALL:Q9CKQ3 (EMBL:AE006192) (130 aa) fasta scores: E(): 7.8e-28, 58.73% id in 126 aa, and to Rhizobium loti hypothetical protein Mlr4407 SWALL:Q98E50 (EMBL:AP003004) (165 aa) fasta scores: E(): 1.3e-14, 39.69% id in 131 aa; acetyltransferase 3738463..3738897 Pectobacterium atrosepticum SCRI1043 2884615 YP_051419.1 CDS ECA3330 NC_004547.2 3738898 3739983 R Similar to Pasteurella haemolytica ATPase FbpC SWALL:Q9ZHY0 (EMBL:AF047427) (336 aa) fasta scores: E(): 8.5e-53, 44.57% id in 341 aa, and to Vibrio vulnificus ABC-type spermidine/putrescine transport system, ATPase component vv11663 SWALL:AAO10080 (EMBL:AE016802) (342 aa) fasta scores: E(): 1.3e-51, 44.14% id in 333 aa; ATP transporter ATP-binding protein complement(3738898..3739983) Pectobacterium atrosepticum SCRI1043 2884616 YP_051420.1 CDS ECA3331 NC_004547.2 3739988 3741673 R Similar to Vibrio cholerae iron vc0609 SWALL:Q9KUB4 (EMBL:AE004146) (541 aa) fasta scores: E(): 2.7e-75, 41.11% id in 540 aa, and to Pasteurella multocida fbpb fbpb or pm0050 SWALL:Q9CPI8 (EMBL:AE006038) (552 aa) fasta scores: E(): 6.1e-78, 41.3% id in 552 aa; ABC transporter permease complement(3739988..3741673) Pectobacterium atrosepticum SCRI1043 2884617 YP_051421.1 CDS ECA3332 NC_004547.2 3742043 3742390 D Similar to Yersinia pestis exported protein ypo3410 or y0776 SWALL:Q8ZBJ9 (EMBL:AJ414157) (115 aa) fasta scores: E(): 1.6e-30, 69.29% id in 114 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yacc precursor yacc or b0122 or c0151 SWALL:YACC_ECOLI (SWALL:P23838) (115 aa) fasta scores: E(): 1.6e-27, 64.34% id in 115 aa; hypothetical protein 3742043..3742390 Pectobacterium atrosepticum SCRI1043 2881370 YP_051422.1 CDS speE NC_004547.2 3742499 3743362 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 3742499..3743362 Pectobacterium atrosepticum SCRI1043 2884367 YP_051423.1 CDS speD NC_004547.2 3743408 3744202 D S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 3743408..3744202 Pectobacterium atrosepticum SCRI1043 2884366 YP_051424.1 CDS nrdH NC_004547.2 3744803 3745042 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glutaredoxin-like protein NrdH or b2673 or c3226 or z3975 or ecs3536 or sf2701 SWALL:NRDH_ECOLI (SWALL:Q47414) (81 aa) fasta scores: E(): 4.2e-11, 45.33% id in 75 aa; glutaredoxin 3744803..3745042 Pectobacterium atrosepticum SCRI1043 2881812 YP_051425.1 CDS nrdI NC_004547.2 3745052 3745459 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 3745052..3745459 Pectobacterium atrosepticum SCRI1043 2881813 YP_051426.1 CDS nrdE NC_004547.2 3745456 3747603 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3745456..3747603 Pectobacterium atrosepticum SCRI1043 2881809 YP_051427.1 CDS nrdF NC_004547.2 3747628 3748590 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 3747628..3748590 Pectobacterium atrosepticum SCRI1043 2881810 YP_051428.1 CDS dnaQ NC_004547.2 3748958 3749695 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(3748958..3749695) Pectobacterium atrosepticum SCRI1043 2882238 YP_051429.1 CDS rnhA NC_004547.2 3749751 3750215 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 3749751..3750215 Pectobacterium atrosepticum SCRI1043 2881371 YP_051430.1 CDS ECA3341 NC_004547.2 3750235 3750945 R Similar to Yersinia pestis hypothetical protein ypo1080 or y3096 SWALL:AAM86646 (EMBL:AJ414146) (239 aa) fasta scores: E(): 6.6e-62, 61.86% id in 236 aa, and to Salmonella typhimurium sam-dependent methyltransferase yafs or stm0262 SWALL:Q8ZRM1 (EMBL:AE008707) (240 aa) fasta scores: E(): 6.6e-60, 59.07% id in 237 aa; hypothetical protein complement(3750235..3750945) Pectobacterium atrosepticum SCRI1043 2881372 YP_051431.1 CDS gloB NC_004547.2 3750989 3751744 D Similar to Escherichia coli, and Escherichia coli O157:H7 probable hydroxyacylglutathione hydrolase glob or b0212 or z0236 or ecs0208 SWALL:GLO2_ECOLI (SWALL:Q47677) (251 aa) fasta scores: E(): 1.2e-56, 56.17% id in 251 aa, and to Photorhabdus luminescens GloB gloB SWALL:AAO17226 (EMBL:AF346500) (250 aa) fasta scores: E(): 4.1e-57, 54.98% id in 251 aa; hydroxyacylglutathione hydrolase 3750989..3751744 Pectobacterium atrosepticum SCRI1043 2881322 YP_051432.1 CDS mltD NC_004547.2 3751815 3753179 D catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D 3751815..3753179 Pectobacterium atrosepticum SCRI1043 2885532 YP_051433.1 CDS ECA3344 NC_004547.2 3753249 3754037 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yafd yafd or b0209 or c0246 or z0232 or ecs0205 or sf0195 SWALL:YAFD_ECOLI (SWALL:P30865) (266 aa) fasta scores: E(): 2.4e-76, 71.53% id in 260 aa, and to Salmonella typhimurium cytoplasmic protein yafd or stm0258 SWALL:Q8ZRM4 (EMBL:AE008706) (259 aa) fasta scores: E(): 1.5e-74, 71.54% id in 253 aa; hypothetical protein complement(3753249..3754037) Pectobacterium atrosepticum SCRI1043 2881373 YP_051434.1 CDS clpB NC_004547.2 3760023 3762599 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ClpB protein ClpB or HtpM or b2592 or c3114 or z3886 or ecs3455 SWALL:CLPB_ECOLI (SWALL:P03815) (857 aa) fasta scores: E(): 0, 85.64% id in 857 aa; protein disaggregation chaperone complement(3760023..3762599) Pectobacterium atrosepticum SCRI1043 2884958 YP_051435.1 CDS ECA3346 NC_004547.2 3762733 3763458 R Similar to Yersinia pestis hypothetical protein ypo3276 or y0913 SWALL:Q8ZBV8 (EMBL:AJ414156) (243 aa) fasta scores: E(): 1.6e-62, 66.25% id in 240 aa, and to Salmonella typhi hypothetical protein Sty2850 SWALL:Q8Z4J1 (EMBL:AL627276) (243 aa) fasta scores: E(): 9.7e-62, 64.16% id in 240 aa; hypothetical protein complement(3762733..3763458) Pectobacterium atrosepticum SCRI1043 2882609 YP_051436.1 CDS rluD NC_004547.2 3763501 3764478 R responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D complement(3763501..3764478) Pectobacterium atrosepticum SCRI1043 2885050 YP_051437.1 CDS ECA3348 NC_004547.2 3764613 3765347 D with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 3764613..3765347 Pectobacterium atrosepticum SCRI1043 2882610 YP_051438.1 CDS ECA3349 NC_004547.2 3765670 3766011 D Similar to Yersinia pestis sigma 54 modulation protein ypo3279 SWALL:Q8ZBV5 (EMBL:AJ414156) (120 aa) fasta scores: E(): 3.7e-34, 84.95% id in 113 aa, and to Salmonella typhimurium, and Salmonella typhi ribosome associated factor, stabilizes ribosomes against dissociation yfia or stm2665 or sty2853 SWALL:Q8XEX6 (EMBL:AE008821) (112 aa) fasta scores: E(): 8.3e-31, 79.46% id in 112 aa; sigma(54) modulation protein 3765670..3766011 Pectobacterium atrosepticum SCRI1043 2882611 YP_051439.1 CDS pheA NC_004547.2 3766362 3767522 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 3766362..3767522 Pectobacterium atrosepticum SCRI1043 2884541 YP_051440.1 CDS tyrA NC_004547.2 3767623 3768744 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(3767623..3768744) Pectobacterium atrosepticum SCRI1043 2884223 YP_051441.1 CDS aroF NC_004547.2 3768751 3769824 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3768751..3769824) Pectobacterium atrosepticum SCRI1043 2884129 YP_051442.1 CDS ECA3353 NC_004547.2 3770090 3770806 D unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT 3770090..3770806 Pectobacterium atrosepticum SCRI1043 2883758 YP_051443.1 CDS ECA3354 NC_004547.2 3770828 3771202 D Similar to Shigella flexneri orf, conserved hypothetical protein yfil or sf2662 SWALL:AAN44158 (EMBL:AE015282) (127 aa) fasta scores: E(): 2.5e-11, 38.33% id in 120 aa, and to Escherichia coli hypothetical protein yfil yfil or b2602 SWALL:YFIL_ECOLI (SWALL:P11289) (134 aa) fasta scores: E(): 2.6e-11, 38.33% id in 120 aa; hypothetical protein 3770828..3771202 Pectobacterium atrosepticum SCRI1043 2883759 YP_051444.1 CDS ECA3355 NC_004547.2 3771461 3772399 D Similar to Ralstonia solanacearum hypothetical protein rsc2286 or rs01270 SWALL:Q8XX32 (EMBL:AL646069) (317 aa) fasta scores: E(): 4e-55, 49.83% id in 311 aa, and to Xanthomonas campestris hypothetical protein Xcc1543 SWALL:Q8PAE2 (EMBL:AE012255) (319 aa) fasta scores: E(): 2.2e-50, 47.84% id in 301 aa; hypothetical protein 3771461..3772399 Pectobacterium atrosepticum SCRI1043 2883760 YP_051445.1 CDS rplS NC_004547.2 3772662 3773009 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(3772662..3773009) Pectobacterium atrosepticum SCRI1043 2883619 YP_051446.1 CDS trmD NC_004547.2 3773072 3773827 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(3773072..3773827) Pectobacterium atrosepticum SCRI1043 2884244 YP_051447.1 CDS rimM NC_004547.2 3773866 3774414 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(3773866..3774414) Pectobacterium atrosepticum SCRI1043 2884717 YP_051448.1 CDS rpsP NC_004547.2 3774433 3774681 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(3774433..3774681) Pectobacterium atrosepticum SCRI1043 2884467 YP_051449.1 CDS ffh NC_004547.2 3774839 3776200 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(3774839..3776200) Pectobacterium atrosepticum SCRI1043 2882285 YP_051450.1 CDS ECA3361 NC_004547.2 3776370 3777164 D Similar to Yersinia pestis membrane protein ypo3297 or y0891 SWALL:Q8ZBU5 (EMBL:AJ414156) (297 aa) fasta scores: E(): 4.5e-81, 75.57% id in 262 aa, and to Salmonella typhimurium CorE SWALL:Q9X619 (EMBL:AF130857) (288 aa) fasta scores: E(): 3.6e-78, 72.72% id in 264 aa; hypothetical protein 3776370..3777164 Pectobacterium atrosepticum SCRI1043 2883761 YP_051451.1 CDS luxS NC_004547.2 3777271 3777786 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(3777271..3777786) Pectobacterium atrosepticum SCRI1043 2882262 YP_051452.1 CDS gshA NC_004547.2 3777940 3779493 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(3777940..3779493) Pectobacterium atrosepticum SCRI1043 2883840 YP_051453.1 CDS ECA3364 NC_004547.2 3779576 3780004 R Similar to Yersinia pestis membrane protein ypo3302 or y0886 SWALL:Q8ZBU1 (EMBL:AJ414156) (142 aa) fasta scores: E(): 4.6e-36, 69.5% id in 141 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein yqaa or stm2819 or sty2945 SWALL:Q8XGM5 (EMBL:AE008828) (141 aa) fasta scores: E(): 2.6e-31, 55.31% id in 141 aa; hypothetical protein complement(3779576..3780004) Pectobacterium atrosepticum SCRI1043 2883073 YP_051454.1 CDS ECA3365 NC_004547.2 3780001 3780567 R YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; fructose-1-phosphatase complement(3780001..3780567) Pectobacterium atrosepticum SCRI1043 2883074 YP_051455.1 CDS csrA NC_004547.2 3781840 3782025 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(3781840..3782025) Pectobacterium atrosepticum SCRI1043 2883773 YP_051456.1 CDS alaS NC_004547.2 3782345 3784972 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(3782345..3784972) Pectobacterium atrosepticum SCRI1043 2882965 YP_051457.1 CDS recX NC_004547.2 3785110 3785598 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(3785110..3785598) Pectobacterium atrosepticum SCRI1043 2885277 YP_051458.1 CDS recA NC_004547.2 3785644 3786717 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(3785644..3786717) Pectobacterium atrosepticum SCRI1043 2885057 YP_051459.1 CDS ECA3370 NC_004547.2 3786825 3787319 R Similar to Yersinia pestis competence-damaged protein ypo3308 SWALL:Q8ZBT7 (EMBL:AJ414156) (162 aa) fasta scores: E(): 4.4e-38, 65.43% id in 162 aa, and to Salmonella typhi hypothetical protein Sty2951 SWALL:Q8Z4D3 (EMBL:AL627276) (165 aa) fasta scores: E(): 3.6e-37, 63.8% id in 163 aa; competence damage-inducible protein A complement(3786825..3787319) Pectobacterium atrosepticum SCRI1043 2883075 YP_051460.1 CDS ECA3371 NC_004547.2 3787555 3787890 R Similar to Pasteurella multocida hypothetical protein Pm0253 SWALL:Q9CP15 (EMBL:AE006059) (117 aa) fasta scores: E(): 1e-27, 55.85% id in 111 aa; hypothetical protein complement(3787555..3787890) Pectobacterium atrosepticum SCRI1043 2882483 YP_051461.1 CDS ECA3372 NC_004547.2 3788371 3788859 D Similar to Anabaena sp. hypothetical protein All2381 SWALL:Q8YUG5 (EMBL:AP003589) (151 aa) fasta scores: E(): 7e-05, 27.46% id in 142 aa, and to Streptomyces lincolnensis hypothetical 17.2 kDa protein in melc2-rnhh intergenic region SWALL:YMEL_STRLN (SWALL:P55049) (150 aa) fasta scores: E(): 0.00028, 25.87% id in 143 aa; hypothetical protein 3788371..3788859 Pectobacterium atrosepticum SCRI1043 2882484 YP_051462.1 CDS marC NC_004547.2 3788942 3789616 D protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 3788942..3789616 Pectobacterium atrosepticum SCRI1043 2881426 YP_051463.1 CDS ECA3374 NC_004547.2 3789808 3791406 D Similar to Ralstonia solanacearum probable transmembrane protein rsc1893 or rs03455 SWALL:Q8XY70 (EMBL:AL646067) (533 aa) fasta scores: E(): 6.6e-66, 37.96% id in 511 aa, and to Pseudomonas putida ggdef family protein pp2413 SWALL:AAN68025 (EMBL:AE016783) (544 aa) fasta scores: E(): 3.3e-73, 41.66% id in 516 aa; signaling membrane protein 3789808..3791406 Pectobacterium atrosepticum SCRI1043 2882485 YP_051464.1 CDS ECA3375 NC_004547.2 3791666 3792868 R Similar to Xanthomonas campestris mfs transporter xcc0495 SWALL:Q8PD50 (EMBL:AE012146) (396 aa) fasta scores: E(): 1.9e-46, 42.6% id in 392 aa, and to Clostridium acetobutylicum predicted permease cac3482 SWALL:Q97DJ5 (EMBL:AE007845) (394 aa) fasta scores: E(): 6.2e-46, 42.54% id in 362 aa; transporter complement(3791666..3792868) Pectobacterium atrosepticum SCRI1043 2883343 YP_051465.1 CDS ECA3376 NC_004547.2 3792984 3793865 R Similar to Rhizobium loti transcription regulator mll3011 SWALL:Q98H66 (EMBL:AP003001) (292 aa) fasta scores: E(): 2.1e-49, 48.61% id in 288 aa, and to Pseudomonas putida transcriptional regulator, LysR family pp3811 SWALL:Q88GB3 (EMBL:AE016788) (294 aa) fasta scores: E(): 1e-34, 41.15% id in 294 aa; LysR family transcriptional regulator complement(3792984..3793865) Pectobacterium atrosepticum SCRI1043 2883344 YP_051466.1 CDS ECA3377 NC_004547.2 3794082 3794717 D cofactor involved in the reduction of disulfides; glutaredoxin 3794082..3794717 Pectobacterium atrosepticum SCRI1043 2883345 YP_051467.1 CDS ECA3378 NC_004547.2 3794816 3795238 R Similar to Yersinia pestis pesticin immunity protein Pim or yppcp1.04 SWALL:Q57285 (EMBL:Z54145) (141 aa) fasta scores: E(): 0.0013, 30.76% id in 143 aa; bacteriocin immunity protein complement(3794816..3795238) Pectobacterium atrosepticum SCRI1043 2883346 YP_051468.1 CDS ECA3379 NC_004547.2 3795370 3796710 R Similar to Nocardia aerocolonigenes glycosyltransferase RbmA or Ngt SWALL:BAC15749 (EMBL:AF534707) (421 aa) fasta scores: E(): 9.7e-34, 31.88% id in 414 aa, and to Streptomyces sp. TP-A0274 N-glycosyltransferase staG SWALL:BAC55209 (EMBL:AB088119) (446 aa) fasta scores: E(): 6.3e-32, 30.76% id in 416 aa; glycosyltransferase complement(3795370..3796710) Pectobacterium atrosepticum SCRI1043 2882520 YP_051469.1 CDS pvcB NC_004547.2 3796722 3797654 R Similar to Pseudomonas aeruginosa pyoverdine biosynthesis protein PvcB SWALL:O30371 (EMBL:AF002222) (291 aa) fasta scores: E(): 7.7e-50, 49.43% id in 263 aa, and to Vibrio cholerae PvcB protein vc1944 SWALL:Q9KQQ4 (EMBL:AE004270) (287 aa) fasta scores: E(): 7.2e-47, 45.09% id in 275 aa; pyoverdine biosynthesis protein complement(3796722..3797654) Pectobacterium atrosepticum SCRI1043 2882671 YP_051470.1 CDS pvcA NC_004547.2 3797644 3798624 R Similar to Pseudomonas aeruginosa pyoverdine biosynthesis protein PvcA SWALL:O30370 (EMBL:AF002222) (327 aa) fasta scores: E(): 2.3e-70, 61.38% id in 303 aa, and to Vibrio cholerae PvcA protein vc1949 SWALL:Q9KQP9 (EMBL:AE004270) (608 aa) fasta scores: E(): 2.1e-13, 28.52% id in 284 aa; pyoverdine biosynthesis protein complement(3797644..3798624) Pectobacterium atrosepticum SCRI1043 2882676 YP_051471.1 CDS ECA3381A NC_004547.2 3798621 >3798818 R Similar to Escherichia coli colicin k immunity protein Cki or CfI SWALL:IMMK_ECOLI (SWALL:Q47503) (96 aa) fasta scores: E(): 1.8, 36.06% id in 61 aa, and to Campylobacter jejuni hypothetical 8.5 kDa protein SWALL:O07090 (EMBL:Y13641) (73 aa) fasta scores: E(): 0.26, 30.61% id in 49 aa; bacteriocin immunity protein complement(3798621..>3798818) Pectobacterium atrosepticum SCRI1043 2882521 YP_051472.1 CDS ECA3382 NC_004547.2 3799229 3799516 R hypothetical protein complement(3799229..3799516) Pectobacterium atrosepticum SCRI1043 2882522 YP_051473.1 CDS ECA3382A NC_004547.2 3799504 3799749 R hypothetical protein complement(3799504..3799749) Pectobacterium atrosepticum SCRI1043 2882897 YP_051474.1 CDS ECA3383 NC_004547.2 3799873 3800157 R Similar to Ralstonia solanacearum hypothetical protein rsp1543 or rs02099 SWALL:Q8XPU3 (EMBL:AL646085) (104 aa) fasta scores: E(): 0.013, 32.97% id in 94 aa, and to Neisseria meningitidis hypothetical protein Nmb0654 SWALL:Q9K0F3 (EMBL:AE002420) (105 aa) fasta scores: E(): 4.3, 23.25% id in 86 aa; hypothetical protein complement(3799873..3800157) Pectobacterium atrosepticum SCRI1043 2882898 YP_051475.1 CDS ECA3384 NC_004547.2 3800170 3800646 R hypothetical protein complement(3800170..3800646) Pectobacterium atrosepticum SCRI1043 2882899 YP_051476.1 CDS ECA3385 NC_004547.2 3800657 3800947 R hypothetical protein complement(3800657..3800947) Pectobacterium atrosepticum SCRI1043 2882900 YP_051477.1 CDS ECA3386 NC_004547.2 3801262 3801546 R hypothetical protein complement(3801262..3801546) Pectobacterium atrosepticum SCRI1043 2882829 YP_051478.1 CDS ECA3387 NC_004547.2 3801551 3801913 R Similar to Neisseria meningitidis hypothetical protein Nma1078 SWALL:Q9JUY9 (EMBL:AL162755) (122 aa) fasta scores: E(): 5.7e-08, 49.27% id in 69 aa; hypothetical protein complement(3801551..3801913) Pectobacterium atrosepticum SCRI1043 2882830 YP_051479.1 CDS ECA3388 NC_004547.2 3802185 3802739 R hypothetical protein complement(3802185..3802739) Pectobacterium atrosepticum SCRI1043 2882831 YP_051480.1 CDS xerC NC_004547.2 3802908 3803930 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(3802908..3803930) Pectobacterium atrosepticum SCRI1043 2881819 YP_051481.1 CDS ECA3390 NC_004547.2 3803975 3806881 R Similar to Photorhabdus luminescens DnaG primase-like dnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 2.5e-133, 71.76% id in 928 aa, and to the N-terminal region of Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase dnag or dnap or parb or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 2.7e-13, 29.1% id in 378 aa. Also similar to ECA3400, (82.939% id), ECA3407 (85.082% id), ECA3416 (85.082% id), ECA4282 (80.041% id), and to ECA4291 (80.041% id).; DnaG primase-like protein complement(3803975..3806881) Pectobacterium atrosepticum SCRI1043 2881820 YP_051482.1 CDS ECA3391 NC_004547.2 3806995 3807396 D Similar to Escherichia coli O157:H7 similar to DicA, regulator of dicB, encoded within cryptic prophage cp-933m z1333 or ecs1069 SWALL:Q8XD66 (EMBL:AE005287) (132 aa) fasta scores: E(): 0.00065, 33.66% id in 101 aa; prophage regulatory ptotein 3806995..3807396 Pectobacterium atrosepticum SCRI1043 2881821 YP_051483.1 CDS ECA3392 NC_004547.2 3807474 3807803 D Similar to Photorhabdus luminescens Orf8 SWALL:AAN64200 (EMBL:AY144117) (106 aa) fasta scores: E(): 1e-07, 38.63% id in 88 aa, and to Salmonella typhimurium cytoplasmic protein stm0296 SWALL:Q8ZRK7 (EMBL:AE008708) (82 aa) fasta scores: E(): 2.2e-07, 38.46% id in 65 aa; hypothetical protein 3807474..3807803 Pectobacterium atrosepticum SCRI1043 2882398 YP_051484.1 CDS ECA3393 NC_004547.2 3807800 3808144 D Similar to Yersinia pestis hypothetical protein ypo3611 or y0263 SWALL:AAM83857 (EMBL:AJ414158) (63 aa) fasta scores: E(): 1.5e-06, 59.09% id in 44 aa; hypothetical protein 3807800..3808144 Pectobacterium atrosepticum SCRI1043 2882399 YP_051485.1 CDS ECA3394 NC_004547.2 3808191 3808556 R hypothetical protein complement(3808191..3808556) Pectobacterium atrosepticum SCRI1043 2882400 YP_051486.1 CDS ECA3395 NC_004547.2 3808556 3808972 R hypothetical protein complement(3808556..3808972) Pectobacterium atrosepticum SCRI1043 2882401 YP_051487.1 CDS ECA3396 NC_004547.2 3809054 3809221 R hypothetical protein complement(3809054..3809221) Pectobacterium atrosepticum SCRI1043 2881887 YP_051488.1 CDS ECA3397 NC_004547.2 3809337 3809699 R hypothetical protein complement(3809337..3809699) Pectobacterium atrosepticum SCRI1043 2881888 YP_051489.1 CDS ECA3398 NC_004547.2 3809692 3809835 R hypothetical protein complement(3809692..3809835) Pectobacterium atrosepticum SCRI1043 2881889 YP_051490.1 CDS xerC NC_004547.2 3809930 3810988 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(3809930..3810988) Pectobacterium atrosepticum SCRI1043 2885403 YP_051491.1 CDS ECA3400 NC_004547.2 3811018 3813909 R Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 5.1e-145, 74.15% id in 921 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 9.7e-14, 29.11% id in 395 aa. Also similar to ECA3390, (82.939% id), ECA3407 (86.812% id), ECA3416 (86.812% id), ECA4282 (84.394% id), and to ECA4291 (84.394% id).; DnaG primase-like protein complement(3811018..3813909) Pectobacterium atrosepticum SCRI1043 2885404 YP_051492.1 CDS ECA3401 NC_004547.2 3814023 3814433 D Similar to Photorhabdus luminescens Orf9 SWALL:AAN64201 (EMBL:AY144117) (130 aa) fasta scores: E(): 0.00051, 27.02% id in 111 aa, and to Bacteriophage A118 repressor protein SWALL:Q9T188 (EMBL:AJ242593) (101 aa) fasta scores: E(): 0.012, 36.5% id in 63 aa; phage regulatory protein 3814023..3814433 Pectobacterium atrosepticum SCRI1043 2885405 YP_051493.1 CDS ECA3402 NC_004547.2 3814512 3814736 D Similar to Yersinia pestis hypothetical y0261 SWALL:Q8CLT6 (EMBL:AE013626) (74 aa) fasta scores: E(): 2.4e-17, 63.51% id in 74 aa, and to Photorhabdus luminescens Orf8 SWALL:Q8GDM5 (EMBL:AY144117) (106 aa) fasta scores: E(): 4.7e-10, 53.62% id in 69 aa; hypothetical protein 3814512..3814736 Pectobacterium atrosepticum SCRI1043 2885406 YP_051494.1 CDS ECA3403 NC_004547.2 3814802 3815131 R hypothetical protein complement(3814802..3815131) Pectobacterium atrosepticum SCRI1043 2884875 YP_051495.1 CDS ECA3404 NC_004547.2 3815128 3815565 R hypothetical protein complement(3815128..3815565) Pectobacterium atrosepticum SCRI1043 2884876 YP_051496.1 CDS ECA3405 NC_004547.2 3815850 3816350 R hypothetical protein complement(3815850..3816350) Pectobacterium atrosepticum SCRI1043 2884877 YP_051497.1 CDS xerC NC_004547.2 3816588 3817622 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(3816588..3817622) Pectobacterium atrosepticum SCRI1043 2882612 YP_051498.1 CDS ECA3407 NC_004547.2 3817656 3820535 R Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 2.1e-145, 73.72% id in 921 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 1.2e-13, 27.89% id in 423 aa. Also similar to ECA3390, (85.082% id), ECA3400 (86.812% id), ECA3416 (100.000% id), ECA4282 (87.010% id), and to ECA4291 (87.010% id).; DnaG primase-like protein complement(3817656..3820535) Pectobacterium atrosepticum SCRI1043 2882613 YP_051499.1 CDS ECA3408 NC_004547.2 3820648 3821043 D Similar to Vibrio phage CTX RstR SWALL:Q8LTJ3 (EMBL:AF511000) (112 aa) fasta scores: E(): 0.024, 32% id in 100 aa, and to Stigmatella aurantiaca transcriptional repressor SWALL:Q93TW4 (EMBL:AF319998) (119 aa) fasta scores: E(): 0.001, 30.35% id in 112 aa; phage regulatory protein 3820648..3821043 Pectobacterium atrosepticum SCRI1043 2882614 YP_051500.1 CDS ECA3409 NC_004547.2 3821115 3821444 D Similar to Photorhabdus luminescens Orf8 SWALL:AAN64200 (EMBL:AY144117) (106 aa) fasta scores: E(): 2.9e-08, 39.77% id in 88 aa, and to Salmonella typhimurium cytoplasmic protein stm0296 SWALL:Q8ZRK7 (EMBL:AE008708) (82 aa) fasta scores: E(): 1.7e-08, 40% id in 65 aa; hypothetical protein 3821115..3821444 Pectobacterium atrosepticum SCRI1043 2883792 YP_051501.1 CDS ECA3410 NC_004547.2 3821441 3821785 D Similar to Yersinia pestis hypothetical protein ypo3611 or y0263 SWALL:Q8ZB18 (EMBL:AJ414158) (63 aa) fasta scores: E(): 2e-05, 54.54% id in 44 aa; hypothetical protein 3821441..3821785 Pectobacterium atrosepticum SCRI1043 2883793 YP_051502.1 CDS ECA3411 NC_004547.2 3821846 3822094 R Similar to Clostridium acetobutylicum hypothetical protein Cac2031 SWALL:Q97HI0 (EMBL:AE007706) (80 aa) fasta scores: E(): 8.4e-10, 49.25% id in 67 aa; hypothetical protein complement(3821846..3822094) Pectobacterium atrosepticum SCRI1043 2883794 YP_051503.1 CDS ECA3412 NC_004547.2 3822091 3822462 R hypothetical protein complement(3822091..3822462) Pectobacterium atrosepticum SCRI1043 2883795 YP_051504.1 CDS ECA3413 NC_004547.2 3822480 3822674 D hypothetical protein 3822480..3822674 Pectobacterium atrosepticum SCRI1043 2883181 YP_051505.1 CDS ECA3414 NC_004547.2 3822780 3823280 R hypothetical protein complement(3822780..3823280) Pectobacterium atrosepticum SCRI1043 2883182 YP_051506.1 CDS xerC NC_004547.2 3823518 3824552 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(3823518..3824552) Pectobacterium atrosepticum SCRI1043 2883183 YP_051507.1 CDS ECA3416 NC_004547.2 3824586 3827465 R Similar to Photorhabdus luminescens DnaG primase-like dnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 2e-145, 73.72% id in 921 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 1.2e-13, 27.89% id in 423 aa. Also similar to ECA3390, (85.082% id), ECA3400 (86.812% id), ECA3407 (100.000% id), ECA4282 (87.010% id), and to ECA4291 (87.010% id).; DnaG primase-like protein complement(3824586..3827465) Pectobacterium atrosepticum SCRI1043 2882801 YP_051508.1 CDS ECA3417 NC_004547.2 3827578 3827973 D Similar to Vibrio phage CTX RstR SWALL:Q8LTJ3 (EMBL:AF511000) (112 aa) fasta scores: E(): 0.024, 32% id in 100 aa, and to Stigmatella aurantiaca transcriptional repressor SWALL:Q93TW4 (EMBL:AF319998) (119 aa) fasta scores: E(): 0.001, 30.35% id in 112 aa; phage regulatory protein 3827578..3827973 Pectobacterium atrosepticum SCRI1043 2882802 YP_051509.1 CDS ECA3418 NC_004547.2 3828045 3828374 D Similar to Photorhabdus luminescens Orf8 SWALL:AAN64200 (EMBL:AY144117) (106 aa) fasta scores: E(): 2.9e-08, 39.77% id in 88 aa, and to Salmonella typhimurium cytoplasmic protein stm0296 SWALL:Q8ZRK7 (EMBL:AE008708) (82 aa) fasta scores: E(): 1.7e-08, 40% id in 65 aa; hypothetical protein 3828045..3828374 Pectobacterium atrosepticum SCRI1043 2882803 YP_051510.1 CDS ECA3419 NC_004547.2 3828371 3828715 D Similar to Yersinia pestis hypothetical protein ypo3611 or y0263 SWALL:Q8ZB18 (EMBL:AJ414158) (63 aa) fasta scores: E(): 6.4e-05, 50% id in 44 aa; hypothetical protein 3828371..3828715 Pectobacterium atrosepticum SCRI1043 2882804 YP_051511.1 CDS ECA3420 NC_004547.2 3828784 3829221 R Similar to Pediococcus damnosus hsp60 SWALL:Q8KWK2 (EMBL:AF405397) (184 aa) fasta scores: E(): 4.1, 24.65% id in 146 aa; hypothetical protein complement(3828784..3829221) Pectobacterium atrosepticum SCRI1043 2885382 YP_051512.1 CDS ECA3421 NC_004547.2 3829218 3834074 R Similar to Photorhabdus luminescens Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 2.3e-61, 28.84% id in 1286 aa, and to Escherichia coli RhsB protein precursor RhsB or b3482 SWALL:RHSB_ECOLI (SWALL:P16917) (1411 aa) fasta scores: E(): 2e-25, 24.98% id in 1401 aa; Rhs protein complement(3829218..3834074) Pectobacterium atrosepticum SCRI1043 2885383 YP_051513.1 CDS ECA3422 NC_004547.2 3834095 3835012 R Similar to Vibrio cholerae hypothetical protein Vca0019 SWALL:Q9KNE6 (EMBL:AE004345) (295 aa) fasta scores: E(): 0.32, 20.54% id in 219 aa, and to Agrobacterium tumefaciens hypothetical protein atu4349 or agr_l_1031 SWALL:Q8U7V0 (EMBL:AE009363) (320 aa) fasta scores: E(): 0.34, 21.94% id in 319 aa; hypothetical protein complement(3834095..3835012) Pectobacterium atrosepticum SCRI1043 2885384 YP_051514.1 CDS ECA3423 NC_004547.2 3835009 3835965 R hypothetical protein complement(3835009..3835965) Pectobacterium atrosepticum SCRI1043 2881407 YP_051515.1 CDS ECA3424 NC_004547.2 3836134 3836901 R Similar to Xanthomonas campestris ankyrin-like protein xcc4050 SWALL:Q8P3M1 (EMBL:AE012526) (325 aa) fasta scores: E(): 3.9e-08, 31.22% id in 253 aa, and to Serratia sp. MK1 accessory protein plaS SWALL:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 1.5e-07, 26.66% id in 210 aa. Also similar to ECA3425 (83.784% identity in 259 aa overlap).; lipoprotein complement(3836134..3836901) Pectobacterium atrosepticum SCRI1043 2881408 YP_051516.1 CDS ECA3425 NC_004547.2 3836898 3837677 R Similar to Xanthomonas campestris ankyrin-like protein xcc4050 SWALL:Q8P3M1 (EMBL:AE012526) (325 aa) fasta scores: E(): 2.1e-08, 30.68% id in 264 aa, and to Serratia sp. MK1 accessory protein plaS SWALL:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 5.5e-07, 25.31% id in 237 aa. Also similar to ECA3424 (83.784% identity in 259 aa overlap); lipoprotein complement(3836898..3837677) Pectobacterium atrosepticum SCRI1043 2881409 YP_051517.1 CDS ECA3426 NC_004547.2 3837677 3839050 R Similar to Serratia liquefaciens extracellular phospholipase A1 precursor PhlA SWALL:PA1_SERLI (SWALL:P18952) (319 aa) fasta scores: E(): 4.2e-06, 30.09% id in 216 aa, and to Xanthomonas campestris phospholipase A1 xcc2722 SWALL:Q8P791 (EMBL:AE012385) (398 aa) fasta scores: E(): 3e-09, 33.82% id in 204 aa; phospholipase complement(3837677..3839050) Pectobacterium atrosepticum SCRI1043 2884083 YP_051518.1 CDS ECA3427 NC_004547.2 3839060 3841096 R Similar to Yersinia pestis VgrG-like protein y0257 SWALL:AAM83851 (EMBL:AE013625) (700 aa) fasta scores: E(): 7e-108, 52.01% id in 521 aa, and to Vibrio cholerae VgrG protein vca0018 SWALL:Q9KNE7 (EMBL:AE004345) (694 aa) fasta scores: E(): 7.6e-107, 47.05% id in 680 aa; hypothetical protein complement(3839060..3841096) Pectobacterium atrosepticum SCRI1043 2884084 YP_051519.1 CDS ECA3428 NC_004547.2 3841279 3841797 R Similar to Vibrio cholerae hcp=28 kDa secreted hydrophilic protein (HcpA or vca0017) and (Hcp or vc1415) SWALL:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 9.6e-56, 78.48% id in 172 aa, and to Yersinia pestis hypothetical protein ypo3708 ypo3708 or y0036 SWALL:AAM83631 (EMBL:AJ414158) (172 aa) fasta scores: E(): 4.8e-59, 80.81% id in 172 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA4275 (99.419% identity in 172aa overlap) and ECA2866 (95.349% identity in 172aa overlap).; hypothetical protein complement(3841279..3841797) Pectobacterium atrosepticum SCRI1043 2884085 YP_051520.1 CDS ECA3430 NC_004547.2 3842363 3843718 R Similar to Escherichia coli hypothetical protein ybeq or b0644 SWALL:YBEQ_ECOLI (SWALL:P77234) (325 aa) fasta scores: E(): 2.1e-09, 28.19% id in 344 aa, and to Shigella flexneri orf, conserved hypothetical protein ybeq or sf0637 SWALL:AAN42273 (EMBL:AE015095) (327 aa) fasta scores: E(): 2.4e-09, 29.58% id in 311 aa; lipoprotein complement(3842363..3843718) Pectobacterium atrosepticum SCRI1043 2884086 YP_051521.1 CDS ECA3431 NC_004547.2 3843747 3845183 R Similar to Photorhabdus luminescens Orf3 SWALL:AAN64195 (EMBL:AY144117) (447 aa) fasta scores: E(): 4e-30, 33.47% id in 469 aa, and to Escherichia coli O157:H7 hypothetical protein z0249 z0249 or ecs0217 SWALL:Q8X7X1 (EMBL:AE005197) (499 aa) fasta scores: E(): 2e-25, 30.42% id in 470 aa; hypothetical protein complement(3843747..3845183) Pectobacterium atrosepticum SCRI1043 2882441 YP_051522.1 CDS ECA3432 NC_004547.2 3845233 3848730 R Similar to Rhizobium leguminosarum ImpL SWALL:Q93EC2 (EMBL:AF361470) (1158 aa) fasta scores: E(): 1.3e-19, 25.08% id in 1200 aa, and to Escherichia coli O157:H7 macrophage toxin z0250 or ecs0218 SWALL:Q8X7W9 (EMBL:AE005197) (1144 aa) fasta scores: E(): 7.8e-112, 44.66% id in 1153 aa, and to Photorhabdus luminescens Pmt1 SWALL:AAN64194 (EMBL:AY144117) (1181 aa) fasta scores: E(): 1.3e-127, 44.42% id in 1184 aa, and to Legionella pneumophila IcmF protein IcmF SWALL:O54529 (EMBL:Y15044) (973 aa) fasta scores: E(): 7.8e-16, 20.74% id in 969 aa; virulence-associated protein complement(3845233..3848730) Pectobacterium atrosepticum SCRI1043 2882442 YP_051523.1 CDS ECA3433 NC_004547.2 3848755 3850173 R Similar to Photorhabdus luminescens Orf1 SWALL:AAN64193 (EMBL:AY144117) (334 aa) fasta scores: E(): 1e-39, 39.56% id in 321 aa, and to Vibrio cholerae hypothetical protein Vca0119 SWALL:Q9KN46 (EMBL:AE004353) (469 aa) fasta scores: E(): 2.8e-42, 34.05% id in 464 aa; hypothetical protein complement(3848755..3850173) Pectobacterium atrosepticum SCRI1043 2882443 YP_051524.1 CDS ECA3434 NC_004547.2 3850185 3850745 R Similar to Yersinia pestis hypothetical protein Ypo3601 SWALL:Q8ZB28 (EMBL:AJ414157) (228 aa) fasta scores: E(): 4.8e-09, 31.88% id in 207 aa, and to Pseudomonas putida conserved hypothetical protein pp4073 SWALL:AAN69663 (EMBL:AE016789) (210 aa) fasta scores: E(): 2.2e-05, 35.23% id in 105 aa; hypothetical protein complement(3850185..3850745) Pectobacterium atrosepticum SCRI1043 2882423 YP_051525.1 CDS ECA3435 NC_004547.2 3850745 3852298 R Similar to Vibrio cholerae sigma-54 dependent transcriptional regulator vca0117 SWALL:Q9KN48 (EMBL:AE004353) (530 aa) fasta scores: E(): 9.9e-52, 40.46% id in 519 aa, and to Escherichia coli hypothetical sigma-54-dependent transcriptional regulator ygev or b2869 SWALL:YGEV_ECOLI (SWALL:Q46802) (592 aa) fasta scores: E(): 1.8e-39, 35.61% id in 438 aa; sigma-54 dependent transcriptional regulator complement(3850745..3852298) Pectobacterium atrosepticum SCRI1043 2882424 YP_051526.1 CDS ECA3436 NC_004547.2 3852301 3854898 R Similar to Thermus thermophilus ClpB protein ClpB SWALL:CLPB_THETH (SWALL:Q9RA63) (854 aa) fasta scores: E(): 7e-69, 37.97% id in 869 aa, and to Yersinia pestis clp ATPase ClpB2 or ypo3599 or ClpB or y0275 SWALL:Q8ZB30 (EMBL:AJ414157) (867 aa) fasta scores: E(): 6.3e-209, 68.66% id in 868 aa; chaperone complement(3852301..3854898) Pectobacterium atrosepticum SCRI1043 2882425 YP_051527.1 CDS ECA3437 NC_004547.2 3854912 3855688 R Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 3.4e-16, 27.58% id in 232 aa, and to Yersinia pestis membrane protein ypo3598 or y0276 SWALL:AAM83868 (EMBL:AJ414157) (255 aa) fasta scores: E(): 4e-46, 46.45% id in 254 aa; hypothetical protein complement(3854912..3855688) Pectobacterium atrosepticum SCRI1043 2882426 YP_051528.1 CDS ECA3438 NC_004547.2 3855704 3857041 R Similar to Rhizobium leguminosarum ImpJ SWALL:Q93EC4 (EMBL:AF361470) (446 aa) fasta scores: E(): 7.8e-61, 40.04% id in 447 aa, and to Vibrio cholerae hypothetical protein Vca0114 SWALL:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 4.7e-104, 60.04% id in 443 aa; hypothetical protein complement(3855704..3857041) Pectobacterium atrosepticum SCRI1043 2882380 YP_051529.1 CDS ECA3439 NC_004547.2 3857044 3857565 R Similar to Yersinia pestis lipoprotein ypo3596 or y0278 SWALL:Q8ZB33 (EMBL:AJ414157) (181 aa) fasta scores: E(): 4.7e-32, 52.6% id in 173 aa, and to Escherichia coli O157:H7 z0257 protein z0257 or ecs0226 SWALL:Q8X7V0 (EMBL:AE005198) (174 aa) fasta scores: E(): 2.1e-28, 47.3% id in 167 aa; lipoprotein complement(3857044..3857565) Pectobacterium atrosepticum SCRI1043 2882381 YP_051530.1 CDS ECA3440 NC_004547.2 3857565 3858785 R Similar to Yersinia pestis hypothetical protein ypo3595 or y0279 SWALL:Q8ZB34 (EMBL:AJ414157) (438 aa) fasta scores: E(): 1.1e-36, 40.92% id in 435 aa, and to Escherichia coli O157:H7 hypothetical protein z0258 or ecs0227 SWALL:Q8X7U8 (EMBL:AE005198) (433 aa) fasta scores: E(): 1.3e-35, 39.2% id in 426 aa; hypothetical protein complement(3857565..3858785) Pectobacterium atrosepticum SCRI1043 2882382 YP_051531.1 CDS ECA3441 NC_004547.2 3858788 3859786 R Similar to Vibrio cholerae hypothetical protein Vca0111 SWALL:Q9KN54 (EMBL:AE004353) (338 aa) fasta scores: E(): 1.1e-59, 46.8% id in 329 aa, and to Yersinia pestis hypothetical protein Ypo3594 SWALL:Q8ZB35 (EMBL:AJ414157) (349 aa) fasta scores: E(): 2.5e-47, 54.6% id in 326 aa; hypothetical protein complement(3858788..3859786) Pectobacterium atrosepticum SCRI1043 2882361 YP_051532.1 CDS ECA3442 NC_004547.2 3859750 3861516 R Similar to Rhizobium leguminosarum ImpG SWALL:Q93EC7 (EMBL:AF361470) (593 aa) fasta scores: E(): 1.6e-27, 31.91% id in 611 aa, and to Vibrio cholerae hypothetical protein Vca0110 SWALL:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 9.2e-130, 51.52% id in 592 aa; hypothetical protein complement(3859750..3861516) Pectobacterium atrosepticum SCRI1043 2882362 YP_051533.1 CDS ECA3443 NC_004547.2 3861519 3861950 R Similar to Yersinia pestis hypothetical protein ypo3705 or y0039 SWALL:Q8ZAT5 (EMBL:AJ414158) (146 aa) fasta scores: E(): 2.3e-22, 45.71% id in 140 aa, and to Escherichia coli O157:H7 hypothetical protein z0261 or ecs0230 SWALL:Q8X7U0 (EMBL:AE005198) (137 aa) fasta scores: E(): 3.6e-14, 36.76% id in 136 aa; hypothetical protein complement(3861519..3861950) Pectobacterium atrosepticum SCRI1043 2882363 YP_051534.1 CDS ECA3444 NC_004547.2 3861956 3863434 R Similar to Rhizobium leguminosarum ImpC SWALL:Q93ED1 (EMBL:AF361470) (493 aa) fasta scores: E(): 6.4e-63, 37.36% id in 479 aa, and to Yersinia pestis hypothetical protein ypo3706 ypo3706 or y0038 SWALL:Q8ZAT4 (EMBL:AJ414158) (493 aa) fasta scores: E(): 3.1e-158, 78.09% id in 493 aa; hypothetical protein complement(3861956..3863434) Pectobacterium atrosepticum SCRI1043 2881947 YP_051535.1 CDS ECA3445 NC_004547.2 3863466 3863969 R Similar to Rhizobium leguminosarum ImpB SWALL:Q93ED2 (EMBL:AF361470) (181 aa) fasta scores: E(): 2.6e-09, 32.66% id in 150 aa, and to Yersinia pestis conserved hypothetical protein y0037 SWALL:AAM83632 (EMBL:AE013605) (166 aa) fasta scores: E(): 5.6e-39, 68.71% id in 163 aa; hypothetical protein complement(3863466..3863969) Pectobacterium atrosepticum SCRI1043 2881948 YP_051536.1 CDS oprJ NC_004547.2 3865039 3866442 R Similar to Pseudomonas aeruginosa outer membrane protein OprJ precursor OprJ or pa4597 SWALL:OPRJ_PSEAE (SWALL:Q51397) (479 aa) fasta scores: E(): 1.2e-94, 57.82% id in 460 aa, and to Pseudomonas putida TtgC SWALL:Q9WWZ8 (EMBL:AF031417) (484 aa) fasta scores: E(): 2.4e-70, 45.14% id in 474 aa, and to Pseudomonas aeruginosa outer membrane protein oprm precursor oprm or oprk or pa0427 SWALL:OPRM_PSEAE (SWALL:Q51487) (485 aa) fasta scores: E(): 1.9e-66, 46.78% id in 466 aa; multidrug resistance outer membrane protein complement(3865039..3866442) Pectobacterium atrosepticum SCRI1043 2885560 YP_051537.1 CDS mexB NC_004547.2 3866439 3869582 R Similar to Pseudomonas aeruginosa multidrug resistance protein MexB or pa0426 SWALL:MEXB_PSEAE (SWALL:P52002) (1046 aa) fasta scores: E(): 1.9e-202, 50.82% id in 1037 aa, and to uncultured bacterium MexD protein mexD SWALL:Q8RSM1 (EMBL:AJ431260) (1047 aa) fasta scores: E(): 0, 64.14% id in 1043 aa; multidrug resistance protein complement(3866439..3869582) Pectobacterium atrosepticum SCRI1043 2883538 YP_051538.1 CDS mexC NC_004547.2 3869665 3870837 R Similar to Pseudomonas aeruginosa membrane fusion protein MexC or pa4599 SWALL:Q51395 (EMBL:U57969) (387 aa) fasta scores: E(): 6.2e-63, 50.78% id in 384 aa, and to uncultured bacterium MexC protein MexC SWALL:Q8RSM2 (EMBL:AJ431260) (388 aa) fasta scores: E(): 9.2e-63, 53.6% id in 375 aa; multidrug resistance protein complement(3869665..3870837) Pectobacterium atrosepticum SCRI1043 2883337 YP_051539.1 CDS nfxB NC_004547.2 3871027 3871593 D Similar to Pseudomonas aeruginosa transcriptional regulatory protein NfxB or pa4600 SWALL:NFXB_PSEAE (SWALL:P32265) (187 aa) fasta scores: E(): 3.1e-14, 35.55% id in 180 aa, and to uncultured bacterium NfxB protein NfxB SWALL:Q8RSM3 (EMBL:AJ431260) (186 aa) fasta scores: E(): 9e-17, 37.5% id in 176 aa; transcriptional regulator 3871027..3871593 Pectobacterium atrosepticum SCRI1043 2882750 YP_051540.1 CDS ECA3450 NC_004547.2 3872000 3872587 R Similar to Caulobacter crescentus hypothetical protein Cc2071 SWALL:Q9A6M2 (EMBL:AE005880) (219 aa) fasta scores: E(): 7.3e-09, 30.05% id in 183 aa, and to Bacillus halodurans hypothetical protein Bh0736 SWALL:Q9KEW3 (EMBL:AP001509) (179 aa) fasta scores: E(): 0.00085, 28.32% id in 173 aa; hypothetical protein complement(3872000..3872587) Pectobacterium atrosepticum SCRI1043 2881949 YP_051541.1 CDS ECA3451 NC_004547.2 3872983 3873474 D hypothetical protein 3872983..3873474 Pectobacterium atrosepticum SCRI1043 2881950 YP_051542.1 CDS fic NC_004547.2 3873467 3874063 D Similar to Escherichia coli cell filamentation protein Fic or b3361 SWALL:FIC_ECOLI (SWALL:P20605) (200 aa) fasta scores: E(): 1e-26, 37.3% id in 193 aa; cell filamentation protein 3873467..3874063 Pectobacterium atrosepticum SCRI1043 2882279 YP_051543.1 CDS ECA3453 NC_004547.2 <3874071 3874256 D Similar to the C-terminal regions of Bacteriophage P4 glycoprotein 3 siD SWALL:VSID_BPP4 (SWALL:P05461) (244 aa) fasta scores: E(): 0.04, 30.35% id in 56 aa, and to Salmonella typhi phage capsid protein t4524 SWALL:AAO71969 (EMBL:AE016849) (286 aa) fasta scores: E(): 0.0029, 43.63% id in 55 aa; phage capsid protein (partial) <3874071..3874256 Pectobacterium atrosepticum SCRI1043 2882526 YP_051544.1 CDS ECA3454 NC_004547.2 3874253 3874501 D Similar to Bacteriophage 186 late control gene B protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 2.6e-10, 58.73% id in 63 aa, and to Salmonella typhi bacteriophage gene regulatory protein sty4826 SWALL:Q8Z107 (EMBL:AL627283) (79 aa) fasta scores: E(): 4.7e-13, 52.43% id in 82 aa. Also similar to ECA0414 (84.146% id. in 55 aa overlap), and to ECA0833 (46.000% id. in 50 aa overlap), and to ECA2599 (43.836% id. in 51 aa overlap).; bacteriophage regulatory protein 3874253..3874501 Pectobacterium atrosepticum SCRI1043 2882527 YP_051545.1 CDS ECA3455 NC_004547.2 3874620 3874775 D Similar to Salmonella typhi hypothetical protein Sty4632 SWALL:Q8Z1E2 (EMBL:AL627283) (72 aa) fasta scores: E(): 0.00018, 51.11% id in 45 aa, and to Ralstonia solanacearum hypothetical protein rsc0956 or rs04410 SWALL:Q8Y0T7 (EMBL:AL646061) (55 aa) fasta scores: E(): 6.6, 50% id in 24 aa; hypothetical protein 3874620..3874775 Pectobacterium atrosepticum SCRI1043 2882528 YP_051546.1 CDS ECA3456 NC_004547.2 3875264 3876157 D hypothetical protein 3875264..3876157 Pectobacterium atrosepticum SCRI1043 2881393 YP_051547.1 CDS ECA3457 NC_004547.2 3876157 3876780 D Weakly similar to Staphylococcus xylosus AgrC SWALL:Q8VSW2 (EMBL:AF346729) (224 aa) fasta scores: E(): 7.1, 24.59% id in 183 aa; hypothetical protein 3876157..3876780 Pectobacterium atrosepticum SCRI1043 2881394 YP_051548.1 CDS ECA3458 NC_004547.2 3876891 3877589 R Similar to Xanthomonas axonopodis hypothetical protein Xac3947 SWALL:Q8PFN3 (EMBL:AE012044) (193 aa) fasta scores: E(): 2.5e-14, 33.92% id in 168 aa; hypothetical protein complement(3876891..3877589) Pectobacterium atrosepticum SCRI1043 2881395 YP_051549.1 CDS ECA3459 NC_004547.2 3877589 3878830 R Similar to Xanthomonas axonopodis hypothetical protein Xac3948 SWALL:Q8PFN2 (EMBL:AE012044) (445 aa) fasta scores: E(): 3.4e-29, 36.03% id in 419 aa; hypothetical protein complement(3877589..3878830) Pectobacterium atrosepticum SCRI1043 2881396 YP_051550.1 CDS ECA3460 NC_004547.2 3878830 3880056 R Similar to Escherichia coli O157:H7 integrase protein for prophage CP-933i z0324 or ecs0289 SWALL:Q8X7K7 (EMBL:AE005203) (410 aa) fasta scores: E(): 7.6e-123, 75.3% id in 405 aa, and to Yersinia pestis phage integrase ypo4033 or y4052 SWALL:AAM87596 (EMBL:AJ414160) (397 aa) fasta scores: E(): 1.5e-94, 62.67% id in 367 aa; phage integrase complement(3878830..3880056) Pectobacterium atrosepticum SCRI1043 2881992 YP_051551.1 CDS ECA3461 NC_004547.2 3880772 3881191 D hypothetical protein 3880772..3881191 Pectobacterium atrosepticum SCRI1043 2881993 YP_051552.1 CDS proA NC_004547.2 3881462 3882715 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(3881462..3882715) Pectobacterium atrosepticum SCRI1043 2882451 YP_051553.1 CDS proB NC_004547.2 3882726 3883829 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(3882726..3883829) Pectobacterium atrosepticum SCRI1043 2885407 YP_051554.1 CDS crl NC_004547.2 3883953 3884327 R involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl complement(3883953..3884327) Pectobacterium atrosepticum SCRI1043 2884942 YP_051555.1 CDS frsA NC_004547.2 3884432 3885682 R forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein complement(3884432..3885682) Pectobacterium atrosepticum SCRI1043 2881994 YP_051556.1 CDS gpt NC_004547.2 3885899 3886357 R catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase complement(3885899..3886357) Pectobacterium atrosepticum SCRI1043 2885812 YP_051557.1 CDS pepD NC_004547.2 3886800 3888260 D Similar to Escherichia coli aminoacyl-histidine dipeptidase PepD or PepH or b0237 SWALL:PEPD_ECOLI (SWALL:P15288) (484 aa) fasta scores: E(): 1.4e-145, 77.27% id in 484 aa; aminoacyl-histidine dipeptidase 3886800..3888260 Pectobacterium atrosepticum SCRI1043 2885189 YP_051558.1 CDS dinB NC_004547.2 3888324 3889382 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(3888324..3889382) Pectobacterium atrosepticum SCRI1043 2883354 YP_051559.1 CDS ECA3469 NC_004547.2 3889458 3890258 R Similar to Rhizobium loti probable DNA-binding protein mlr2155 SWALL:Q98J14 (EMBL:AP002999) (276 aa) fasta scores: E(): 2.2e-30, 38.69% id in 261 aa, and to Bradyrhizobium japonicum Bll4672 protein bll4672 SWALL:BAC49937 (EMBL:AP005952) (282 aa) fasta scores: E(): 4.5e-47, 49.61% id in 260 aa; DNA-binding protein complement(3889458..3890258) Pectobacterium atrosepticum SCRI1043 2881804 YP_051560.1 CDS ECA3470 NC_004547.2 3890504 3891274 D Similar to Shigella flexneri orf, conserved hypothetical protein yafe or sf0196 SWALL:AAN41858 (EMBL:AE015056) (256 aa) fasta scores: E(): 8.2e-58, 64.28% id in 252 aa, and to Salmonella typhi methyltransferase yafe or sty0280 SWALL:Q8Z984 (EMBL:AL627266) (256 aa) fasta scores: E(): 4.1e-54, 60.31% id in 252 aa; methyltransferase 3890504..3891274 Pectobacterium atrosepticum SCRI1043 2881805 YP_051561.1 CDS ECA3471 NC_004547.2 3891668 3892402 D Similar to Yersinia pestis exported protein ypo3241 SWALL:Q8ZBY9 (EMBL:AJ414156) (246 aa) fasta scores: E(): 8.2e-67, 67.48% id in 243 aa, and to Salmonella typhimurium, and Salmonella typhi periplasmic protein yafk or stm0312 or sty0357 SWALL:Q8XF45 (EMBL:AE008709) (246 aa) fasta scores: E(): 8.7e-57, 56.85% id in 248 aa; hypothetical protein 3891668..3892402 Pectobacterium atrosepticum SCRI1043 2881806 YP_051562.1 CDS ECA3472 NC_004547.2 3892373 3893140 R Similar to Yersinia pestis hypothetical protein ypo3242 or y0948 SWALL:Q8ZBY8 (EMBL:AJ414156) (257 aa) fasta scores: E(): 9.9e-101, 86.22% id in 254 aa, and to Escherichia coli hypothetical protein yafj or b0223 SWALL:YAFJ_ECOLI (SWALL:Q47147) (255 aa) fasta scores: E(): 4.9e-95, 82.35% id in 255 aa; hypothetical protein complement(3892373..3893140) Pectobacterium atrosepticum SCRI1043 2885356 YP_051563.1 CDS gmhA NC_004547.2 3893233 3893814 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(3893233..3893814) Pectobacterium atrosepticum SCRI1043 2882938 YP_051564.1 CDS fadE NC_004547.2 3894156 3896603 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 3894156..3896603 Pectobacterium atrosepticum SCRI1043 2883751 YP_051565.1 CDS ECA3475 NC_004547.2 3896702 3897052 D Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein yajd or stm0411 or sty0449 or t2452 SWALL:YAJD_SALTY (SWALL:P40777) (115 aa) fasta scores: E(): 3.7e-46, 91.3% id in 115 aa, and to Yersinia pestis hypothetical protein Ypo1179 SWALL:Q8ZGU8 (EMBL:AJ414146) (113 aa) fasta scores: E(): 3.6e-45, 87.61% id in 113 aa; hypothetical protein 3896702..3897052 Pectobacterium atrosepticum SCRI1043 2885357 YP_051566.1 CDS mtnK NC_004547.2 3897126 3898328 R phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase complement(3897126..3898328) Pectobacterium atrosepticum SCRI1043 2881595 YP_051567.1 CDS ECA3477 NC_004547.2 3898447 3899475 D Similar to Thermotoga maritima translation initiation factor EIF-2B tm0911 SWALL:E2B_THEMA (SWALL:Q9X013) (343 aa) fasta scores: E(): 2.1e-43, 45.02% id in 342 aa, and to Xanthomonas campestris initiation factor EIF-2B xcc1573 SWALL:Q8PAB2 (EMBL:AE012258) (354 aa) fasta scores: E(): 1.3e-40, 44.81% id in 328 aa; translation initiation factor EIF-2B 3898447..3899475 Pectobacterium atrosepticum SCRI1043 2885358 YP_051568.1 CDS ECA3478 NC_004547.2 3899535 3899801 R Similar to Vibrio cholerae hypothetical protein Vca0105 SWALL:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 2.3e-15, 55.31% id in 94 aa, and to Escherichia coli O6 hypothetical protein c1887 SWALL:AAN80347 (EMBL:AE016760) (94 aa) fasta scores: E(): 1.7e-13, 53.19% id in 94 aa; hypothetical protein complement(3899535..3899801) Pectobacterium atrosepticum SCRI1043 2885359 YP_051569.1 CDS ECA3479 NC_004547.2 3899841 3901556 R Weakly similar to Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 0.00056, 26.34% id in 410 aa; hypothetical protein complement(3899841..3901556) Pectobacterium atrosepticum SCRI1043 2885379 YP_051570.1 CDS ECA3480 NC_004547.2 3901553 3902074 R Similar to Pseudomonas sp. CA10 hypothetical 18.9 kDa protein SWALL:Q9AQM6 (EMBL:AB047548) (170 aa) fasta scores: E(): 3.2, 25.17% id in 147 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:BAC41541 (EMBL:AB088420) (170 aa) fasta scores: E(): 3.2, 25.17% id in 147 aa; hypothetical protein complement(3901553..3902074) Pectobacterium atrosepticum SCRI1043 2885380 YP_051571.1 CDS ECA3481 NC_004547.2 3902193 3902711 R hypothetical protein complement(3902193..3902711) Pectobacterium atrosepticum SCRI1043 2885381 YP_051572.1 CDS ECA3482 NC_004547.2 3902708 3903433 R Similar to Ralstonia solanacearum hypothetical protein rsc1499 or rs03806 SWALL:Q8XZA5 (EMBL:AL646064) (233 aa) fasta scores: E(): 6.9, 24.44% id in 180 aa; hypothetical protein complement(3902708..3903433) Pectobacterium atrosepticum SCRI1043 2885232 YP_051573.1 CDS ECA3485 NC_004547.2 3906045 3906590 R Similar to Pseudomonas aeruginosa probable oxidase pa1684 SWALL:Q9I341 (EMBL:AE004595) (181 aa) fasta scores: E(): 2.2e-40, 56.66% id in 180 aa, and to Klebsiella oxytoca E-2/E-2' protein SWALL:Q9ZFE7 (EMBL:AF102514) (179 aa) fasta scores: E(): 5.3e-50, 69.1% id in 178 aa; oxidase complement(3906045..3906590) Pectobacterium atrosepticum SCRI1043 2885234 YP_051574.1 CDS masA NC_004547.2 3906587 3907276 R Similar to Klebsiella oxytoca E-1 enzyme masA SWALL:Q48389 (EMBL:U00148) (229 aa) fasta scores: E(): 5e-51, 63.71% id in 226 aa, and to Pseudomonas aeruginosa enolase-phosphatase e-1 masa or pa1685 SWALL:Q9I340 (EMBL:AE004595) (249 aa) fasta scores: E(): 4.9e-40, 55.09% id in 216 aa; enolase complement(3906587..3907276) Pectobacterium atrosepticum SCRI1043 2881427 YP_051575.1 CDS ECA3487 NC_004547.2 3907273 3907890 R catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway; methylthioribulose-1-phosphate dehydratase complement(3907273..3907890) Pectobacterium atrosepticum SCRI1043 2885235 YP_051576.1 CDS ECA3488 NC_004547.2 3908071 3909228 D catalyzes the transfer of an amino moiety; aminotransferase 3908071..3909228 Pectobacterium atrosepticum SCRI1043 2885239 YP_051577.1 CDS ECA3489 NC_004547.2 3909216 3909983 D Similar to Salmonella typhimurium amidohydrolase yafv or stm0308 SWALL:Q8ZRJ8 (EMBL:AE008709) (255 aa) fasta scores: E(): 3.3e-78, 72.94% id in 255 aa, and to Escherichia coli O157:H7 ec 3.5. amidase-type enzyme yafv or z0276 or ecs0246 SWALL:Q8X7R4 (EMBL:AE005200) (256 aa) fasta scores: E(): 7.5e-75, 70.58% id in 255 aa; hypothetical protein 3909216..3909983 Pectobacterium atrosepticum SCRI1043 2885240 YP_051578.1 CDS amaB NC_004547.2 3910026 3911288 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(3910026..3911288) Pectobacterium atrosepticum SCRI1043 2884197 YP_051579.1 CDS pucG NC_004547.2 3911285 3912529 R Similar to Bacillus subtilis purine catabolism protein PucG SWALL:PUCG_BACSU (SWALL:O32148) (416 aa) fasta scores: E(): 1.9e-78, 52.73% id in 402 aa, and to Xanthomonas campestris serine-pyruvate aminotransferase xcc0283 SWALL:Q8PDQ2 (EMBL:AE012124) (418 aa) fasta scores: E(): 2.2e-93, 59.7% id in 407 aa; purine catabolism protein complement(3911285..3912529) Pectobacterium atrosepticum SCRI1043 2881461 YP_051580.1 CDS ECA3492 NC_004547.2 3912579 3913322 R Similar to Bacillus stearothermophilus glutamine transport ATP-binding protein GlnQ SWALL:GLNQ_BACST (SWALL:P27675) (242 aa) fasta scores: E(): 3.8e-43, 52.72% id in 239 aa, and to Yersinia pestis amino acid ABC transporter, ATP-binding protein ypo3254 or glnq or y0935 SWALL:Q8ZBY0 (EMBL:AJ414156) (248 aa) fasta scores: E(): 5.2e-78, 89.79% id in 245 aa; amino acid ABC transporter ATP-binding protein complement(3912579..3913322) Pectobacterium atrosepticum SCRI1043 2885241 YP_051581.1 CDS ECA3493 NC_004547.2 3913303 3913956 R Similar to Yersinia pestis amino acid ABC transporter, permease protein ypo3255 or y0934 SWALL:Q8ZBX9 (EMBL:AJ414156) (217 aa) fasta scores: E(): 2.3e-76, 88.47% id in 217 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu1390 or agr_c_2569 SWALL:Q8UFK7 (EMBL:AE009100) (219 aa) fasta scores: E(): 2.6e-49, 59.9% id in 217 aa; amino acid ABC transporter permease complement(3913303..3913956) Pectobacterium atrosepticum SCRI1043 2885102 YP_051582.1 CDS ECA3494 NC_004547.2 3913953 3914621 R Similar to Yersinia pestis amino acid ABC transporter, permease protein ypo3256 or y0933 SWALL:AAM84515 (EMBL:AJ414156) (222 aa) fasta scores: E(): 1.1e-67, 79.27% id in 222 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu1389 or agr_c_2567 SWALL:Q8UFK8 (EMBL:AE009100) (223 aa) fasta scores: E(): 3.1e-43, 57.27% id in 213 aa; amino acid ABC transporter permease complement(3913953..3914621) Pectobacterium atrosepticum SCRI1043 2885103 YP_051583.1 CDS ECA3495 NC_004547.2 3914634 3915440 R Similar to Yersinia pestis amino acid ABC transporter, periplasmic protein ypo3257 or y0932 SWALL:Q8ZBX7 (EMBL:AJ414156) (262 aa) fasta scores: E(): 3.7e-73, 76.8% id in 263 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu1388 or agr_c_2566 SWALL:Q8UFK9 (EMBL:AE009100) (261 aa) fasta scores: E(): 1.1e-56, 60.85% id in 258 aa; amino acid ABC transporter substrate binding protein complement(3914634..3915440) Pectobacterium atrosepticum SCRI1043 2885104 YP_051584.1 CDS ECA3496 NC_004547.2 3916065 3916907 R Similar to Yersinia pestis RpiR-family transcriptional regulatory protein ypo3259 or y0931 SWALL:Q8ZBX5 (EMBL:AJ414156) (281 aa) fasta scores: E(): 1.9e-75, 73.28% id in 277 aa, and to Rhizobium meliloti hypothetical protein r02078 r02078 or smc04363 SWALL:Q92NU4 (EMBL:AL591789) (280 aa) fasta scores: E(): 3e-21, 33.33% id in 273 aa; transcriptional regulator complement(3916065..3916907) Pectobacterium atrosepticum SCRI1043 2884923 YP_051585.1 CDS ECA3497 NC_004547.2 3917101 3918687 D Similar to Xanthomonas axonopodis gamma-glutamyltranspeptidase Ggt or xac0305 SWALL:Q8PQL8 (EMBL:AE011655) (526 aa) fasta scores: E(): 1.1e-98, 53.01% id in 530 aa, and to Vibrio cholerae gamma-glutamyltranspeptidase, vca0558 SWALL:Q9KM31 (EMBL:AE004386) (522 aa) fasta scores: E(): 2.1e-82, 48.24% id in 514 aa; gamma-glutamyltranspeptidase 3917101..3918687 Pectobacterium atrosepticum SCRI1043 2884924 YP_051586.1 CDS ECA3498 NC_004547.2 3918713 3918904 D Similar to Yersinia pestis hypothetical protein Ypo3260 SWALL:Q8ZBX4 (EMBL:AJ414156) (67 aa) fasta scores: E(): 3.1e-08, 55.73% id in 61 aa, and to Anabaena sp. hypothetical protein Asr1017 SWALL:Q8YY35 (EMBL:AP003584) (62 aa) fasta scores: E(): 0.018, 37.7% id in 61 aa; hypothetical protein 3918713..3918904 Pectobacterium atrosepticum SCRI1043 2884925 YP_051587.1 CDS ECA3499 NC_004547.2 3918901 3920391 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3918901..3920391 Pectobacterium atrosepticum SCRI1043 2884926 YP_051588.1 CDS ECA3500 NC_004547.2 3920435 3920821 D Similar to Yersinia pestis hypothetical protein ypo3262 or y0927 SWALL:Q8ZBX2 (EMBL:AJ414156) (155 aa) fasta scores: E(): 2e-36, 73.17% id in 123 aa, and to Bradyrhizobium japonicum Blr1042 protein blr1042 SWALL:BAC46307 (EMBL:AP005938) (130 aa) fasta scores: E(): 3.8e-26, 57.6% id in 125 aa; hypothetical protein 3920435..3920821 Pectobacterium atrosepticum SCRI1043 2884558 YP_051589.1 CDS ECA3501 NC_004547.2 3920868 3921260 R Similar to Streptococcus mutans conserved hypothetical protein smu.1681C SWALL:AAN59320 (EMBL:AE014997) (124 aa) fasta scores: E(): 9.9e-24, 52.71% id in 129 aa, and to Brucella suis glyoxalase family protein br1900 SWALL:AAN30793 (EMBL:AE014480) (123 aa) fasta scores: E(): 1.4e-21, 53.9% id in 128 aa; hypothetical protein complement(3920868..3921260) Pectobacterium atrosepticum SCRI1043 2884559 YP_051590.1 CDS proV NC_004547.2 3921930 3923132 D Similar to Escherichia coli glycine betaine/L-proline transport ATP-binding protein ProV or b2677 SWALL:PROV_ECOLI (SWALL:P14175) (400 aa) fasta scores: E(): 2e-112, 80.95% id in 399 aa; glycine betaine/L-proline transport ATP-binding protein 3921930..3923132 Pectobacterium atrosepticum SCRI1043 2885464 YP_051591.1 CDS proW NC_004547.2 3923125 3924306 D with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 3923125..3924306 Pectobacterium atrosepticum SCRI1043 2882458 YP_051592.1 CDS proX NC_004547.2 3924544 3925548 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 3924544..3925548 Pectobacterium atrosepticum SCRI1043 2882459 YP_051593.1 CDS ECA3505 NC_004547.2 3925651 3926541 R Similar to Bradyrhizobium japonicum Blr6576 protein Blr6576 SWALL:BAC51841 (EMBL:AP005959) (283 aa) fasta scores: E(): 3.7e-64, 55.43% id in 285 aa, and to Streptomyces coelicolor hydrolase sco0461 or scf76.01 or scf51a.39 SWALL:CAD55442 (EMBL:AL939105) (289 aa) fasta scores: E(): 5.3e-53, 49.64% id in 280 aa; hydrolase complement(3925651..3926541) Pectobacterium atrosepticum SCRI1043 2884560 YP_051594.1 CDS ECA3506 NC_004547.2 3926632 3927213 D Similar to Ralstonia solanacearum hypothetical protein rsp0306 or rs05465 SWALL:Q8XT11 (EMBL:AL646077) (199 aa) fasta scores: E(): 2.7e-17, 35.13% id in 185 aa, and to Bradyrhizobium japonicum Bll6575 protein Bll6575 SWALL:BAC51840 (EMBL:AP005959) (254 aa) fasta scores: E(): 1.7e-09, 31.65% id in 199 aa; hypothetical protein 3926632..3927213 Pectobacterium atrosepticum SCRI1043 2884674 YP_051595.1 CDS ECA3507 NC_004547.2 3927350 3928510 R Similar to Bradyrhizobium japonicum Blr0368 protein Blr0368 SWALL:BAC45633 (EMBL:AP005936) (398 aa) fasta scores: E(): 5.2e-15, 43.73% id in 359 aa, and to Yersinia pestis hypothetical protein ypo1149 or y3033 SWALL:Q8ZGX4 (EMBL:AJ414146) (334 aa) fasta scores: E(): 3.3e-12, 36.31% id in 347 aa; hypothetical protein complement(3927350..3928510) Pectobacterium atrosepticum SCRI1043 2884675 YP_051596.1 CDS ECA3508 NC_004547.2 3928680 3929900 D Similar to Yersinia pestis probable sugar transporter ypo3263 or y0926 SWALL:AAM84508 (EMBL:AJ414156) (399 aa) fasta scores: E(): 1.2e-102, 78.21% id in 381 aa, and to Salmonella typhi transmembrane transport protein sty2938 SWALL:Q8Z4E1 (EMBL:AL627276) (394 aa) fasta scores: E(): 1.5e-100, 74.11% id in 394 aa; transport protein 3928680..3929900 Pectobacterium atrosepticum SCRI1043 2884676 YP_051597.1 CDS ECA3509 NC_004547.2 3930070 3930801 D Similar to Yersinia pestis amino acid transporter ypo3264 or y0925 SWALL:Q8ZBX0 (EMBL:AJ414156) (257 aa) fasta scores: E(): 1.6e-68, 75.86% id in 232 aa, and to Escherichia coli O157:H7 orf, hypothetical protein z3983 or ecs3544 SWALL:Q8X908 (EMBL:AE005497) (245 aa) fasta scores: E(): 8.5e-63, 71.3% id in 230 aa; amino acid transporter 3930070..3930801 Pectobacterium atrosepticum SCRI1043 2884677 YP_051598.1 CDS ECA3510 NC_004547.2 3930798 3931139 D Similar to Erwinia chrysanthemi YgaH protein YgaH SWALL:Q93KB3 (EMBL:AJ410307) (113 aa) fasta scores: E(): 5.6e-31, 72.97% id in 111 aa, and to Yersinia pestis membrane protein ypo3265 or y0924 SWALL:Q8ZBW9 (EMBL:AJ414156) (113 aa) fasta scores: E(): 7.9e-28, 65.13% id in 109 aa; hypothetical protein 3930798..3931139 Pectobacterium atrosepticum SCRI1043 2885054 YP_051599.1 CDS emrR NC_004547.2 3931316 3931831 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 3931316..3931831 Pectobacterium atrosepticum SCRI1043 2885127 YP_051600.1 CDS emrA NC_004547.2 3932105 3933280 D Similar to Erwinia chrysanthemi EmrA protein EmrA SWALL:Q93KB1 (EMBL:AJ410307) (391 aa) fasta scores: E(): 7.9e-104, 72.63% id in 391 aa, and to Escherichia coli multidrug resistance protein A EmrA or b2685 SWALL:EMRA_ECOLI (SWALL:P27303) (390 aa) fasta scores: E(): 5.7e-94, 68.28% id in 391 aa; multidrug resistance protein A 3932105..3933280 Pectobacterium atrosepticum SCRI1043 2885208 YP_051601.1 CDS emrB NC_004547.2 3933298 3934833 D Similar to Escherichia coli, and Escherichia coli O157:H7 multidrug resistance protein B EmrB or b2686 or z3987 or ecs3548 SWALL:EMRB_ECOLI (SWALL:P27304) (512 aa) fasta scores: E(): 5.1e-176, 83.92% id in 510 aa; multidrug resistance protein B 3933298..3934833 Pectobacterium atrosepticum SCRI1043 2885209 YP_051602.1 CDS nupC2 NC_004547.2 3935043 3936227 D Similar to Escherichia coli, and Escherichia coli O6 nucleoside permease NupC or Cru or b2393 or c2932 SWALL:NUPC_ECOLI (SWALL:P33031) (400 aa) fasta scores: E(): 1.2e-105, 71.75% id in 400 aa; nucleoside permease 3935043..3936227 Pectobacterium atrosepticum SCRI1043 2883790 YP_051603.1 CDS ECA3515 NC_004547.2 3936426 3936890 R Similar to Pseudomonas syringae lipoprotein, pspto3094 SWALL:Q880Q8 (EMBL:AE016867) (153 aa) fasta scores: E(): 3e-09, 34.96% id in 143 aa, and to Xanthomonas campestris hypothetical protein Xcc3078 SWALL:Q8P692 (EMBL:AE012422) (146 aa) fasta scores: E(): 5.7e-12, 45.94% id in 111 aa; lipoprotein complement(3936426..3936890) Pectobacterium atrosepticum SCRI1043 2885055 YP_051604.1 CDS ECA3516 NC_004547.2 3936945 3938096 R Similar to Erwinia chrysanthemi YfiF protein YfiF SWALL:Q93KA9 (EMBL:AJ410308) (366 aa) fasta scores: E(): 4.2e-86, 72.06% id in 383 aa, and to Yersinia pestis tRNA/rRNA methyltransferase yfif or ypo3269 SWALL:Q8ZBW5 (EMBL:AJ414156) (388 aa) fasta scores: E(): 4.4e-89, 67.76% id in 394 aa; methyltransferase complement(3936945..3938096) Pectobacterium atrosepticum SCRI1043 2885056 YP_051605.1 CDS trxC NC_004547.2 3938346 3938765 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri thioredoxin 2 TrxC or b2582 or c3107 or z3867 or ecs3448 or sf2644 SWALL:THI2_ECOLI (SWALL:P33636) (139 aa) fasta scores: E(): 1.5e-43, 74.81% id in 139 aa; thioredoxin 2 3938346..3938765 Pectobacterium atrosepticum SCRI1043 2884229 YP_051606.1 CDS ECA3518 NC_004547.2 3938912 3939664 D Similar to Yersinia pestis hypothetical protein ypo3271 or y0918 SWALL:AAM84500 (EMBL:AJ414156) (249 aa) fasta scores: E(): 4.6e-56, 66.51% id in 218 aa, and to Shigella flexneri orf, conserved hypothetical protein yfip or sf2645 SWALL:AAN44141 (EMBL:AE015279) (249 aa) fasta scores: E(): 8.3e-54, 60.85% id in 235 aa; hypothetical protein 3938912..3939664 Pectobacterium atrosepticum SCRI1043 2885691 YP_051607.1 CDS ECA3519 NC_004547.2 3939697 3942345 D Similar to Yersinia pestis acetyltransferase ypo3272 SWALL:Q8ZBW2 (EMBL:AJ414156) (880 aa) fasta scores: E(): 0, 79.56% id in 881 aa, and to Escherichia coli hypothetical protein yfiq or b2584 SWALL:YFIQ_ECOLI (SWALL:P76594) (886 aa) fasta scores: E(): 0, 76.84% id in 881 aa; acyl-CoA synthetase 3939697..3942345 Pectobacterium atrosepticum SCRI1043 2885692 YP_051608.1 CDS pssA NC_004547.2 3942520 3943878 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 3942520..3943878 Pectobacterium atrosepticum SCRI1043 2882469 YP_051609.1 CDS ECA3521 NC_004547.2 3943929 3944264 D Similar to Escherichia coli O6 hypothetical protein yfim or c3111 SWALL:Q8FF03 (EMBL:AE016764) (114 aa) fasta scores: E(): 3.8e-26, 56.36% id in 110 aa, and to Salmonella typhi hypothetical protein yfim or t0257 SWALL:AAO67983 (EMBL:AE016834) (107 aa) fasta scores: E(): 3.3e-25, 60% id in 105 aa; hypothetical protein 3943929..3944264 Pectobacterium atrosepticum SCRI1043 2885693 YP_051610.1 CDS kgtP NC_004547.2 3944261 3945541 R Similar to Escherichia coli, and Shigella flexneri alpha-ketoglutarate permease KgtP or WitA or b2587 or sf2649 SWALL:KGTP_ECOLI (SWALL:P17448) (432 aa) fasta scores: E(): 9.2e-143, 82.31% id in 424 aa; alpha-ketoglutarate transporter complement(3944261..3945541) Pectobacterium atrosepticum SCRI1043 2883969 YP_051611.1 CDS ECA3523 NC_004547.2 3951618 3952181 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(3951618..3952181) Pectobacterium atrosepticum SCRI1043 2885713 YP_051612.1 CDS metN NC_004547.2 3952362 3953393 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 3952362..3953393 Pectobacterium atrosepticum SCRI1043 2883541 YP_051613.1 CDS metI NC_004547.2 3953386 3954039 D part of the MetNIQ methionine uptake system; DL-methionine transporter permease 3953386..3954039 Pectobacterium atrosepticum SCRI1043 2883940 YP_051614.1 CDS metQ NC_004547.2 3954101 3954916 D Similar to Escherichia coli D-methionine-binding lipoprotein MetQ precursor MetQ or b0197 SWALL:METQ_ECOLI (SWALL:P28635) (271 aa) fasta scores: E(): 3.6e-88, 87.82% id in 271 aa; DL-methionine transporter substrate-binding subunit 3954101..3954916 Pectobacterium atrosepticum SCRI1043 2883536 YP_051615.1 CDS rcsF NC_004547.2 3955024 3955434 D Similar to Escherichia coli, and Escherichia coli O6 protein RcsF or b0196 or c0237 SWALL:RCSF_ECOLI (SWALL:P28633) (134 aa) fasta scores: E(): 6e-20, 56.61% id in 136 aa, and to Yersinia pestis lipoprotein RcsF or ypo1070 or y3107 SWALL:AAM86657 (EMBL:AJ414146) (135 aa) fasta scores: E(): 1.4e-21, 60.14% id in 138 aa; outer membrane lipoprotein 3955024..3955434 Pectobacterium atrosepticum SCRI1043 2884514 YP_051616.1 CDS ECA3528 NC_004547.2 3955431 3956147 D Similar to Yersinia pestis hypothetical protein ypo1069 or y3108 SWALL:Q8ZH42 (EMBL:AJ414146) (235 aa) fasta scores: E(): 1.1e-77, 80.34% id in 234 aa, and to Escherichia coli O6 hypothetical protein yaeb or c0236 SWALL:AAN78728 (EMBL:AE016755) (235 aa) fasta scores: E(): 1e-64, 69.65% id in 234 aa; hypothetical protein 3955431..3956147 Pectobacterium atrosepticum SCRI1043 2885714 YP_051617.1 CDS proS NC_004547.2 3956293 3958011 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3956293..3958011 Pectobacterium atrosepticum SCRI1043 2885463 YP_051618.1 CDS rpoS NC_004547.2 3958117 3959109 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS complement(3958117..3959109) Pectobacterium atrosepticum SCRI1043 2884480 YP_051619.1 CDS nlpD NC_004547.2 3959163 3960197 R outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD complement(3959163..3960197) Pectobacterium atrosepticum SCRI1043 2881292 YP_051620.1 CDS pcm NC_004547.2 3960622 3961248 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(3960622..3961248) Pectobacterium atrosepticum SCRI1043 2881374 YP_051621.1 CDS truD NC_004547.2 3961391 3962437 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(3961391..3962437) Pectobacterium atrosepticum SCRI1043 2885715 YP_051622.1 CDS ispF NC_004547.2 3962555 3963052 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3962555..3963052) Pectobacterium atrosepticum SCRI1043 2882185 YP_051623.1 CDS ispD NC_004547.2 3963091 3963804 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3963091..3963804) Pectobacterium atrosepticum SCRI1043 2881968 YP_051624.1 CDS ftsB NC_004547.2 3963808 3964143 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB complement(3963808..3964143) Pectobacterium atrosepticum SCRI1043 2884011 YP_051625.1 CDS ECA3537 NC_004547.2 3964485 3965270 D Similar to Neisseria gonorrhoeae histidine-binding protein precursor HisJ SWALL:HISJ_NEIGO (SWALL:Q06758) (268 aa) fasta scores: E(): 6.2e-32, 40.4% id in 250 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glutamine-binding periplasmic protein precursor GlnH or b0811 or c0896 or z1033 or ecs0889 SWALL:GLNH_ECOLI (SWALL:P10344) (248 aa) fasta scores: E(): 1e-19, 33.61% id in 235 aa; amino acid-binding protein 3964485..3965270 Pectobacterium atrosepticum SCRI1043 2885716 YP_051626.1 CDS ECA3538 NC_004547.2 3965404 3966168 D Similar to Clostridium perfringens probable amino acid ABC transporter cpe0601 SWALL:Q8XMT7 (EMBL:AP003187) (223 aa) fasta scores: E(): 2.4e-22, 38.64% id in 251 aa, and to Rhizobium loti amino acid ABC transporter, permease protein mll4276 SWALL:Q98EE7 (EMBL:AP003003) (269 aa) fasta scores: E(): 1.2e-21, 31.53% id in 241 aa; amino acid ABC transporter 3965404..3966168 Pectobacterium atrosepticum SCRI1043 2884015 YP_051627.1 CDS ECA3539 NC_004547.2 3966155 3966877 D Similar to Methanosarcina mazei glutamine transporter, ATP-binding protein GlnQ or mm1941 SWALL:Q8PVM2 (EMBL:AE013431) (240 aa) fasta scores: E(): 2e-55, 67.5% id in 240 aa, and to Oceanobacillus iheyensis glutamine ABC transporter ATP-binding protein ob1006 SWALL:Q8CUV1 (EMBL:AP004596) (240 aa) fasta scores: E(): 8.9e-55, 64.16% id in 240 aa; amino acid ABC transporter ATP-binding protein 3966155..3966877 Pectobacterium atrosepticum SCRI1043 2884016 YP_051628.1 CDS ECA3540 NC_004547.2 3966954 3967298 R Similar to Yersinia pestis membrane protein ypo3363 SWALL:Q8ZBP4 (EMBL:AJ414156) (105 aa) fasta scores: E(): 8.9e-24, 60.9% id in 110 aa, and to Klebsiella aerogenes YgbE SWALL:Q9EYY2 (EMBL:AF308468) (118 aa) fasta scores: E(): 5.4e-15, 47.32% id in 112 aa; hypothetical protein complement(3966954..3967298) Pectobacterium atrosepticum SCRI1043 2884017 YP_051629.1 CDS cysC NC_004547.2 3967344 3967961 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(3967344..3967961) Pectobacterium atrosepticum SCRI1043 2882244 YP_051630.1 CDS cysN NC_004547.2 3967963 3969453 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(3967963..3969453) Pectobacterium atrosepticum SCRI1043 2882031 YP_051631.1 CDS cysD NC_004547.2 3969465 3970373 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3969465..3970373) Pectobacterium atrosepticum SCRI1043 2882395 YP_051632.1 CDS cysG1 NC_004547.2 3970383 3971825 R Similar to Escherichia coli, and Escherichia coli O157:H7 siroheme synthase [includes: uroporphyrin-III C-methyltransferase; precorrin-2 oxidase; ferrochelatase] CysG or b3368 or z4729 or ecs4219 SWALL:CYSG_ECOLI (SWALL:P11098) (457 aa) fasta scores: E(): 9.1e-87, 56.15% id in 463 aa; multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase complement(3970383..3971825) Pectobacterium atrosepticum SCRI1043 2882397 YP_051633.1 CDS cysH NC_004547.2 3972135 3972869 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3972135..3972869) Pectobacterium atrosepticum SCRI1043 2882116 YP_051634.1 CDS cysI NC_004547.2 3972882 3974615 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(3972882..3974615) Pectobacterium atrosepticum SCRI1043 2882117 YP_051635.1 CDS cysJ NC_004547.2 3974615 3976444 R catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha complement(3974615..3976444) Pectobacterium atrosepticum SCRI1043 2883908 YP_051636.1 CDS ECA3548 NC_004547.2 3976723 3978447 R Similar to Xanthomonas campestris hypothetical protein Xcc0350 SWALL:Q8PDI8 (EMBL:AE012131) (413 aa) fasta scores: E(): 6.6e-09, 25.67% id in 261 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4108 SWALL:Q9HWS0 (EMBL:AE004827) (414 aa) fasta scores: E(): 3.4e-08, 25.81% id in 275 aa; hypothetical protein complement(3976723..3978447) Pectobacterium atrosepticum SCRI1043 2883942 YP_051637.1 CDS ECA3549 NC_004547.2 3978974 3979714 D Similar to Vibrio vulnificus response regulator VieA vv21511 SWALL:AAO08375 (EMBL:AE016813) (386 aa) fasta scores: E(): 5.5e-16, 30.04% id in 233 aa, and to Anabaena sp. two-component response regulator alr1230 SWALL:Q8YXI3 (EMBL:AP003585) (403 aa) fasta scores: E(): 7.6e-16, 30.35% id in 224 aa; signaling protein 3978974..3979714 Pectobacterium atrosepticum SCRI1043 2883943 YP_051638.1 CDS ECA3550 NC_004547.2 3979929 3981608 D hypothetical protein 3979929..3981608 Pectobacterium atrosepticum SCRI1043 2883944 YP_051639.1 CDS ECA3551 NC_004547.2 3981679 3982971 R Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 8.1e-98, 56.7% id in 425 aa, and to Yersinia pestis sugar-binding protein ypo1719 or TogB or y1881 SWALL:Q8ZFI4 (EMBL:AJ414150) (430 aa) fasta scores: E(): 1.4e-93, 55.47% id in 411 aa. Also similar to ECA2406 (TogB) (56.398% id) and to ECA2210 (47.442% id); periplasmic-binding protein complement(3981679..3982971) Pectobacterium atrosepticum SCRI1043 2883945 YP_051640.1 CDS ECA3552 NC_004547.2 3983509 3984855 D Similar to Prevotella ruminicola polygalacturonase SWALL:Q9WXE7 (EMBL:AB022865) (494 aa) fasta scores: E(): 3.9e-17, 23.87% id in 423 aa, and to Agrobacterium tumefaciens polygalacturonase atu4560 or agr_l_619 SWALL:Q8U794 (EMBL:AE009384) (453 aa) fasta scores: E(): 2.8e-56, 36.03% id in 444 aa; polygalacturonase 3983509..3984855 Pectobacterium atrosepticum SCRI1043 2883697 YP_051641.1 CDS ECA3553 NC_004547.2 3984884 3985300 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri 6-pyruvoyl tetrahydrobiopterin synthase YgcM or b2765 or z4075 or ecs3620 or sf2781 SWALL:PTPS_ECOLI (SWALL:Q46903) (121 aa) fasta scores: E(): 8.1e-44, 86.66% id in 120 aa; 6-pyruvoyl tetrahydrobiopterin synthase 3984884..3985300 Pectobacterium atrosepticum SCRI1043 2883698 YP_051642.1 CDS ECA3554 NC_004547.2 3985365 3986036 R Similar to Salmonella typhimurium, and Salmonella typhi organic radical activating enzymes ygcf or stm2951 or sty3080 SWALL:Q8XEY5 (EMBL:AE008835) (223 aa) fasta scores: E(): 1.3e-75, 81.16% id in 223 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ygcf ygcf or b2777 or z4089 or ecs3633 or sf2790 SWALL:YGCF_ECOLI (SWALL:P55139) (223 aa) fasta scores: E(): 2.8e-75, 80.71% id in 223 aa; hypothetical protein complement(3985365..3986036) Pectobacterium atrosepticum SCRI1043 2883699 YP_051643.1 CDS meh NC_004547.2 3986238 3987221 D Similar to Erwinia chrysanthemi metallo hydrolase precursor Meh SWALL:CAC83617 (EMBL:AJ292045) (324 aa) fasta scores: E(): 8.6e-80, 65.64% id in 326 aa, and to Plesiomonas sp. M6 methyl parathion hydrolase Mpd SWALL:Q9ALW1 (EMBL:AF338729) (331 aa) fasta scores: E(): 1.8e-46, 47.5% id in 320 aa. Also similar to ECA3557 (52.761% id. in 326 aa overlap); metallo hydrolase 3986238..3987221 Pectobacterium atrosepticum SCRI1043 2885086 YP_051644.1 CDS ECA3556 NC_004547.2 3987237 3988169 R Similar to Pseudomonas aeruginosa MexT protein MexT SWALL:O87785 (EMBL:AJ007825) (304 aa) fasta scores: E(): 3.2e-33, 36.3% id in 303 aa, and to Burkholderia cepacia DntR SWALL:Q8VUD7 (EMBL:AF169302) (301 aa) fasta scores: E(): 5.8e-33, 35.88% id in 301 aa; LysR family transcriptional regulator complement(3987237..3988169) Pectobacterium atrosepticum SCRI1043 2883662 YP_051645.1 CDS ECA3557 NC_004547.2 3988268 3989257 D Similar to Erwinia chrysanthemi metallo hydrolase precursor Meh SWALL:CAC83617 (EMBL:AJ292045) (324 aa) fasta scores: E(): 1.8e-68, 56% id in 325 aa, and to Plesiomonas sp. DLL-1 methyl parathion degrading protein SWALL:Q93SP1 (EMBL:AY029773) (341 aa) fasta scores: E(): 5e-49, 47.41% id in 310 aa. Also similar to ECA3555 (52.761% id. in 326 aa overlap); metallo hydrolase 3988268..3989257 Pectobacterium atrosepticum SCRI1043 2883663 YP_051646.1 CDS ECA3558 NC_004547.2 3989266 3990012 D Similar to Photorhabdus luminescens Orf29 SWALL:AAO17195 (EMBL:AF346500) (248 aa) fasta scores: E(): 6e-74, 81.04% id in 248 aa, and to Escherichia coli hypothetical oxidoreductase ygff or b2902 SWALL:YGFF_ECOLI (SWALL:P52037) (247 aa) fasta scores: E(): 1.5e-55, 63.26% id in 245 aa; short chain dehydrogenase 3989266..3990012 Pectobacterium atrosepticum SCRI1043 2883664 YP_051647.1 CDS rhiN NC_004547.2 3990452 3991591 R Similar to Erwinia chrysanthemi RhiN protein RhiN SWALL:CAC83616 (EMBL:AJ292045) (379 aa) fasta scores: E(): 9e-146, 87.07% id in 379 aa, and to Salmonella typhimurium cytoplasmic protein stm1911 SWALL:Q8ZNU8 (EMBL:AE008785) (379 aa) fasta scores: E(): 1.5e-128, 75.72% id in 379 aa. Also similar to ECA3749 (43.810% id. in 315 aa overlap); plant-inducible protein complement(3990452..3991591) Pectobacterium atrosepticum SCRI1043 2884633 YP_051648.1 CDS ECA3560 NC_004547.2 3991635 3993194 R Similar to Erwinia chrysanthemi oligogalacturonide transporter TogT SWALL:Q93KC2 (EMBL:AJ305143) (508 aa) fasta scores: E(): 1.2e-83, 42% id in 519 aa. Also similar to ECA0817 (TogT) (40.426% id. in 517 aa overlap); oligogalacturonide transporter complement(3991635..3993194) Pectobacterium atrosepticum SCRI1043 2883658 YP_051649.1 CDS ECA3561 NC_004547.2 3993498 3994388 R Similar to Streptomyces antibioticus transcriptional regulatory protein AraB AbaB SWALL:ARAB_STRAT (SWALL:P52659) (301 aa) fasta scores: E(): 4e-16, 32.78% id in 302 aa, and to Streptomyces coelicolor LysR-family transcriptional regulator sco6801 or sc1a2.10 SWALL:Q9L231 (EMBL:AL939129) (300 aa) fasta scores: E(): 1.2e-09, 30.9% id in 288 aa; LysR family transcriptional regulator complement(3993498..3994388) Pectobacterium atrosepticum SCRI1043 2883659 YP_051650.1 CDS calB NC_004547.2 3994559 3995977 D Similar to Pseudomonas sp. coniferyl aldehyde dehydrogenase CalB SWALL:CALB_PSESP (SWALL:O86447) (480 aa) fasta scores: E(): 1.4e-97, 55.5% id in 463 aa, and to Caulobacter crescentus probable coniferyl aldehyde dehydrogenase CalB or cc1849 SWALL:CALB_CAUCR (SWALL:Q9A777) (485 aa) fasta scores: E(): 2.5e-85, 50.96% id in 467 aa; coniferyl aldehyde dehydrogenase 3994559..3995977 Pectobacterium atrosepticum SCRI1043 2881348 YP_051651.1 CDS ECA3563 NC_004547.2 3996022 3996702 D Similar to Xanthomonas axonopodis nonf-related protein NonF or xac3491 SWALL:Q8PGX1 (EMBL:AE011997) (226 aa) fasta scores: E(): 1.8e-58, 68.77% id in 221 aa, and to Rhizobium meliloti hypothetical protein rb0205 or smb20212 SWALL:Q92WX2 (EMBL:AL603642) (226 aa) fasta scores: E(): 3.3e-57, 66.96% id in 224 aa; hypothetical protein 3996022..3996702 Pectobacterium atrosepticum SCRI1043 2883660 YP_051652.1 CDS ECA3564 NC_004547.2 3996793 3997815 R Similar to Escherichia coli iron-chelating periplasmic-binding protein SWALL:Q8VR80 (EMBL:AF447814) (332 aa) fasta scores: E(): 7.3e-53, 47.19% id in 303 aa, and to Methanosarcina acetivorans iron ma1222 SWALL:Q8TRF8 (EMBL:AE010789) (365 aa) fasta scores: E(): 1.2e-30, 33.72% id in 338 aa; iron-chelating periplasmic-binding protein complement(3996793..3997815) Pectobacterium atrosepticum SCRI1043 2883661 YP_051653.1 CDS ECA3565 NC_004547.2 3997875 4000067 R Similar to Yersinia enterocolitica ferrichrome receptor FcuA precursor fcuA SWALL:FCUA_YEREN (SWALL:Q05202) (758 aa) fasta scores: E(): 2.8e-42, 29.09% id in 787 aa, and to Escherichia coli O6 hypothetical protein c0294 or c2518 SWALL:AAN80973 (EMBL:AE016755) (721 aa) fasta scores: E(): 1.5e-160, 57.22% id in 720 aa; TonB dependent receptor complement(3997875..4000067) Pectobacterium atrosepticum SCRI1043 2883636 YP_051654.1 CDS eno NC_004547.2 4000448 4001743 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(4000448..4001743) Pectobacterium atrosepticum SCRI1043 2884919 YP_051655.1 CDS pyrG NC_004547.2 4001842 4003479 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(4001842..4003479) Pectobacterium atrosepticum SCRI1043 2882679 YP_051656.1 CDS mazG NC_004547.2 4003706 4004518 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(4003706..4004518) Pectobacterium atrosepticum SCRI1043 2881438 YP_051657.1 CDS relA NC_004547.2 4004843 4007080 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase complement(4004843..4007080) Pectobacterium atrosepticum SCRI1043 2885251 YP_051658.1 CDS rumA NC_004547.2 4007131 4008483 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(4007131..4008483) Pectobacterium atrosepticum SCRI1043 2884443 YP_051659.1 CDS rpfA NC_004547.2 4008599 4011400 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 4008599..4011400 Pectobacterium atrosepticum SCRI1043 2885027 YP_051660.1 CDS garK NC_004547.2 4011491 4012636 R Similar to Escherichia coli glycerate kinase 2 GarK or b3124 SWALL:GRK2_ECOLI (SWALL:P23524) (381 aa) fasta scores: E(): 6.4e-89, 70.5% id in 373 aa, and to Bacillus subtilis glycerate kinase GalxK or s14A SWALL:GRK_BACSU (SWALL:P42100) (382 aa) fasta scores: E(): 3.9e-78, 58.57% id in 379 aa; glycerate kinase complement(4011491..4012636) Pectobacterium atrosepticum SCRI1043 2882925 YP_051661.1 CDS garR NC_004547.2 4012813 4013697 R catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase complement(4012813..4013697) Pectobacterium atrosepticum SCRI1043 2882355 YP_051662.1 CDS garL NC_004547.2 4013788 4014558 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(4013788..4014558) Pectobacterium atrosepticum SCRI1043 2882354 YP_051663.1 CDS gudD NC_004547.2 4014627 4015967 R Similar to Escherichia coli, and Escherichia coli O157:H7 glucarate dehydratase GudD or b2787 or z4102 or ecs3647 SWALL:GUDH_ECOLI (SWALL:P76637) (445 aa) fasta scores: E(): 2.3e-156, 84.87% id in 443 aa; glucarate dehydratase complement(4014627..4015967) Pectobacterium atrosepticum SCRI1043 2883605 YP_051664.1 CDS gudX NC_004547.2 4016005 4017357 R Similar to Escherichia coli glucarate dehydratase related protein GudX or b2788 SWALL:GUDX_ECOLI (SWALL:Q46915) (446 aa) fasta scores: E(): 1.7e-152, 81.83% id in 446 aa; glucarate dehydratase complement(4016005..4017357) Pectobacterium atrosepticum SCRI1043 2883607 YP_051665.1 CDS gudP NC_004547.2 4017962 4019314 R Similar to Escherichia coli probable glucarate transporter GudP or b2789 SWALL:GUDP_ECOLI (SWALL:Q46916) (450 aa) fasta scores: E(): 3.5e-148, 80.49% id in 446 aa; glucarate transporter complement(4017962..4019314) Pectobacterium atrosepticum SCRI1043 2883606 YP_051666.1 CDS garD NC_004547.2 4019875 4021449 D Similar to Escherichia coli D-galactarate dehydratase GarD or b3128 SWALL:GARD_ECOLI (SWALL:P39829) (523 aa) fasta scores: E(): 1.3e-177, 85.65% id in 516 aa; D-galactarate dehydratase 4019875..4021449 Pectobacterium atrosepticum SCRI1043 2882924 YP_051667.1 CDS ECA3579 NC_004547.2 4022115 4023650 D Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 3.8e-72, 44.13% id in 503 aa, and to Yersinia pestis methyl-accepting chemotaxis protein ypo1644 SWALL:Q8ZFP9 (EMBL:AJ414149) (526 aa) fasta scores: E(): 1.2e-89, 53.01% id in 515 aa; methyl-accepting chemotaxis protein 4022115..4023650 Pectobacterium atrosepticum SCRI1043 2883637 YP_051668.1 CDS ECA3580 NC_004547.2 4023825 4024229 D Similar to Yersinia pestis exported protein ypo2987 SWALL:Q8ZCJ8 (EMBL:AJ414154) (115 aa) fasta scores: E(): 0.012, 31.66% id in 120 aa, and to Escherichia coli protein FlxA or b1566 SWALL:FLXA_ECOLI (SWALL:P77609) (110 aa) fasta scores: E(): 0.94, 27.35% id in 117 aa. Also similar to ECA3581 (48.624% id. in 109 aa overlap); hypothetical protein 4023825..4024229 Pectobacterium atrosepticum SCRI1043 2883638 YP_051669.1 CDS ECA3581 NC_004547.2 4024427 4024783 D Similar to Yersinia pestis exported protein ypo2987 SWALL:Q8ZCJ8 (EMBL:AJ414154) (115 aa) fasta scores: E(): 2.7e-07, 39.66% id in 121 aa, and to Escherichia coli protein FlxA or b1566 SWALL:FLXA_ECOLI (SWALL:P77609) (110 aa) fasta scores: E(): 0.075, 28.81% id in 118 aa. Also similar to ECA3580 (48.624% id. in 109 aa overlap); hypothetical protein 4024427..4024783 Pectobacterium atrosepticum SCRI1043 2883379 YP_051670.1 CDS ECA3582 NC_004547.2 4024876 4025097 R Similar to Yersinia pestis hypothetical protein Ypo2988 SWALL:Q8ZCJ7 (EMBL:AJ414154) (71 aa) fasta scores: E(): 8.4e-21, 79.7% id in 69 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ypeb or b2410.1 or z3676 or ecs3282.1 SWALL:YPEB_ECOLI (SWALL:P56604) (72 aa) fasta scores: E(): 8.5e-21, 80.28% id in 71 aa; hypothetical protein complement(4024876..4025097) Pectobacterium atrosepticum SCRI1043 2883380 YP_051671.1 CDS ligA NC_004547.2 4025196 4027241 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(4025196..4027241) Pectobacterium atrosepticum SCRI1043 2883216 YP_051672.1 CDS rfaE NC_004547.2 4027398 4028828 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(4027398..4028828) Pectobacterium atrosepticum SCRI1043 2885289 YP_051673.1 CDS glnE NC_004547.2 4029078 4031933 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(4029078..4031933) Pectobacterium atrosepticum SCRI1043 2881768 YP_051674.1 CDS ECA3586 NC_004547.2 4031986 4033323 R Similar to Yersinia pestis hypothetical protein Ypo0652 SWALL:Q8ZI62 (EMBL:AJ414144) (435 aa) fasta scores: E(): 2.2e-84, 51.13% id in 442 aa, and to Escherichia coli hypothetical protein ygif or b3054 SWALL:YGIF_ECOLI (SWALL:P30871) (433 aa) fasta scores: E(): 2.1e-80, 48.86% id in 442 aa; hypothetical protein complement(4031986..4033323) Pectobacterium atrosepticum SCRI1043 2883381 YP_051675.1 CDS ECA3587 NC_004547.2 4033670 4034290 D Similar to Yersinia pestis exported protein ypo0651 or y3528 SWALL:Q8ZI63 (EMBL:AJ414144) (207 aa) fasta scores: E(): 2.5e-57, 76.69% id in 206 aa, and to Salmonella typhimurium, and Salmonella typhi sh3 domain protein ygim or stm3203 or sty3382 SWALL:Q8XFH7 (EMBL:AE008847) (204 aa) fasta scores: E(): 1.4e-51, 71.84% id in 206 aa; signal transduction protein 4033670..4034290 Pectobacterium atrosepticum SCRI1043 2883382 YP_051676.1 CDS cca NC_004547.2 4034399 4035643 D catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 4034399..4035643 Pectobacterium atrosepticum SCRI1043 2881350 YP_051677.1 CDS uppP NC_004547.2 4035704 4036522 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(4035704..4036522) Pectobacterium atrosepticum SCRI1043 2882171 YP_051678.1 CDS folB NC_004547.2 4036671 4037027 R catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(4036671..4037027) Pectobacterium atrosepticum SCRI1043 2882081 YP_051679.1 CDS ECA3591 NC_004547.2 4037132 4037767 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 4037132..4037767 Pectobacterium atrosepticum SCRI1043 2883357 YP_051680.1 CDS ECA3592 NC_004547.2 4037846 4039432 R Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 5.9e-60, 42.5% id in 527 aa; methyl-accepting chemotaxis protein complement(4037846..4039432) Pectobacterium atrosepticum SCRI1043 2883358 YP_051681.1 CDS ppa NC_004547.2 4039680 4040210 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 4039680..4040210 Pectobacterium atrosepticum SCRI1043 2885574 YP_051682.1 CDS ECA3594 NC_004547.2 4040304 4040654 R Similar to Yersinia pestis hypothetical protein ypo3522 or y0662 SWALL:Q8ZB97 (EMBL:AJ414157) (118 aa) fasta scores: E(): 9.8e-33, 71.05% id in 114 aa, and to Salmonella typhi hypothetical protein ytfp or t4465 SWALL:AAO71912 (EMBL:AE016849) (114 aa) fasta scores: E(): 1.3e-27, 62.83% id in 113 aa; hypothetical protein complement(4040304..4040654) Pectobacterium atrosepticum SCRI1043 2883359 YP_051683.1 CDS ECA3595 NC_004547.2 4040657 4044694 R Similar to Yersinia pestis exported protein ypo3523 or y0661 SWALL:Q8ZB96 (EMBL:AJ414157) (1305 aa) fasta scores: E(): 0, 65.19% id in 1313 aa, and to Salmonella typhi exported protein ytfn or sty4769 SWALL:Q8Z149 (EMBL:AL627283) (1259 aa) fasta scores: E(): 0, 57.79% id in 1315 aa; hypothetical protein complement(4040657..4044694) Pectobacterium atrosepticum SCRI1043 2883268 YP_051684.1 CDS ECA3596 NC_004547.2 4044691 4046550 R Similar to Yersinia pestis exported protein ypo3524 or y0659 SWALL:Q8ZB95 (EMBL:AJ414157) (578 aa) fasta scores: E(): 6.1e-181, 74.48% id in 580 aa, and to Salmonella typhimurium, and Salmonella typhi outer membrane protein ytfm or stm4409 or sty4768 SWALL:Q8XEL5 (EMBL:AE008906) (577 aa) fasta scores: E(): 6.6e-173, 71.55% id in 573 aa; hypothetical protein complement(4044691..4046550) Pectobacterium atrosepticum SCRI1043 2883269 YP_051685.1 CDS msrA NC_004547.2 4046883 4047521 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 4046883..4047521 Pectobacterium atrosepticum SCRI1043 2881209 YP_051686.1 CDS ECA3598 NC_004547.2 4047693 4049018 D Similar to Yersinia pestis membrane protein ypo3526 or y0657 SWALL:Q8ZB93 (EMBL:AJ414157) (443 aa) fasta scores: E(): 5.8e-144, 84.38% id in 442 aa, and to Salmonella typhimurium, and Salmonella typhi hemolysin-related protein ytfl or stm4407 or sty4766 SWALL:Q8XG66 (EMBL:AE008906) (447 aa) fasta scores: E(): 2.9e-135, 78.81% id in 439 aa; hypothetical protein 4047693..4049018 Pectobacterium atrosepticum SCRI1043 2883270 YP_051687.1 CDS ECA3599 NC_004547.2 4049083 4049289 R Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein ytfk or b4217 or c5315 SWALL:YTFK_ECOLI (SWALL:P39318) (68 aa) fasta scores: E(): 2.1e-19, 79.1% id in 67 aa, and to Yersinia pestis hypothetical protein ypo3527 or y0656 SWALL:AAM84244 (EMBL:AJ414157) (70 aa) fasta scores: E(): 6.1e-19, 77.27% id in 66 aa; hypothetical protein complement(4049083..4049289) Pectobacterium atrosepticum SCRI1043 2883254 YP_051688.1 CDS ECA3600 NC_004547.2 4049638 4050216 D Similar to Yersinia pestis exported protein ypo3528 SWALL:Q8ZB91 (EMBL:AJ414157) (187 aa) fasta scores: E(): 2.2e-43, 64.76% id in 193 aa, and to Salmonella typhimurium transcriptional regulator ytfj or stm4405 SWALL:Q8ZK73 (EMBL:AE008906) (185 aa) fasta scores: E(): 2.7e-42, 68.42% id in 171 aa; hypothetical protein 4049638..4050216 Pectobacterium atrosepticum SCRI1043 2883255 YP_051689.1 CDS cysQ NC_004547.2 4050219 4050959 R catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; adenosine-3'(2'),5'-bisphosphate nucleotidase complement(4050219..4050959) Pectobacterium atrosepticum SCRI1043 2882033 YP_051690.1 CDS cpdB NC_004547.2 4051288 4053240 D periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 4051288..4053240 Pectobacterium atrosepticum SCRI1043 2884947 YP_051691.1 CDS ECA3603 NC_004547.2 4053431 4053985 D Similar to Agrobacterium tumefaciens flavodoxin WrbA or atu4201 or agr_l_1309 SWALL:Q8U897 (EMBL:AE009349) (193 aa) fasta scores: E(): 1.2e-43, 65.73% id in 178 aa, and to Escherichia coli hypothetical 19.6 kDa protein SWALL:Q9F7X7 (EMBL:AF270497) (183 aa) fasta scores: E(): 3.8e-49, 69.78% id in 182 aa; flavodoxin 4053431..4053985 Pectobacterium atrosepticum SCRI1043 2883256 YP_051692.1 CDS ECA3604 NC_004547.2 4054049 4054471 R Similar to Yersinia pestis exported protein ypo2981 SWALL:Q8ZCK3 (EMBL:AJ414154) (137 aa) fasta scores: E(): 7.6e-20, 42.3% id in 130 aa, and to Salmonella typhimurium, and Salmonella typhi periplasmic protein ypec or stm2407 or sty2648 SWALL:Q8XFD1 (EMBL:AE008808) (108 aa) fasta scores: E(): 1.2e-08, 37.16% id in 113 aa; hypothetical protein complement(4054049..4054471) Pectobacterium atrosepticum SCRI1043 2883257 YP_051693.1 CDS ipdC NC_004547.2 4054763 4056430 D Similar to Enterobacter cloacae indole-3-pyruvate decarboxylase IpdC SWALL:DCIP_ENTCL (SWALL:P23234) (552 aa) fasta scores: E(): 1.6e-115, 55.39% id in 556 aa, and to Salmonella typhimurium indole-3-pyruvate decarboxylase Ipd or stm2405 SWALL:Q93IM7 (EMBL:AJ401270) (550 aa) fasta scores: E(): 6.1e-118, 55.27% id in 559 aa; indole-3-pyruvate decarboxylase 4054763..4056430 Pectobacterium atrosepticum SCRI1043 2881467 YP_051694.1 CDS ECA3606 NC_004547.2 4056533 4057198 D Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein 4056533..4057198 Pectobacterium atrosepticum SCRI1043 2883114 YP_051695.1 CDS fklB NC_004547.2 4057307 4057927 R FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase complement(4057307..4057927) Pectobacterium atrosepticum SCRI1043 2882209 YP_051696.1 CDS ECA3608 NC_004547.2 4058330 4059040 D Similar to Yersinia pestis hypothetical protein ypo3533 or y0650 SWALL:Q8ZB86 (EMBL:AJ414157) (246 aa) fasta scores: E(): 7.2e-27, 42.8% id in 250 aa, and to Shigella flexneri orf, conserved hypothetical protein ytfb or sf4280 SWALL:AAN45698 (EMBL:AE015436) (193 aa) fasta scores: E(): 9e-23, 43.93% id in 198 aa; hypothetical protein 4058330..4059040 Pectobacterium atrosepticum SCRI1043 2883115 YP_051697.1 CDS ECA3609 NC_004547.2 4059037 4059399 R Similar to Corynebacterium efficiens conserved hypothetical protein ce0815 SWALL:BAC17625 (EMBL:AP005216) (119 aa) fasta scores: E(): 1.1e-17, 48.27% id in 116 aa, and to Rhizobium leguminosarum hypothetical 13.6 kDa protein SWALL:Q93EB8 (EMBL:AF361470) (115 aa) fasta scores: E(): 2.4e-16, 44.54% id in 110 aa; hypothetical protein complement(4059037..4059399) Pectobacterium atrosepticum SCRI1043 2883116 YP_051698.1 CDS rplI NC_004547.2 4059527 4059979 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(4059527..4059979) Pectobacterium atrosepticum SCRI1043 2883967 YP_051699.1 CDS rpsR NC_004547.2 4060021 4060248 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(4060021..4060248) Pectobacterium atrosepticum SCRI1043 2884462 YP_051700.1 CDS priB NC_004547.2 4060253 4060573 R binds single-stranded DNA at the primosome assembly site; primosomal replication protein N complement(4060253..4060573) Pectobacterium atrosepticum SCRI1043 2882325 YP_051701.1 CDS rpsF NC_004547.2 4060579 4060971 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(4060579..4060971) Pectobacterium atrosepticum SCRI1043 2884476 YP_051702.1 CDS ECA3614 NC_004547.2 4061153 4061905 R YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase complement(4061153..4061905) Pectobacterium atrosepticum SCRI1043 2883053 YP_051703.1 CDS ECA3615 NC_004547.2 4062200 4064140 D Similar to Ralstonia solanacearum methyl-accepting chemotaxis transmembrane protein rsc3136 or rs00467 SWALL:Q8XUQ0 (EMBL:AL646073) (661 aa) fasta scores: E(): 2.9e-68, 39.38% id in 645 aa, and to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 1.9e-38, 44.34% id in 318 aa; methyl-accepting chemotaxis protein 4062200..4064140 Pectobacterium atrosepticum SCRI1043 2883054 YP_051704.1 CDS ECA3616 NC_004547.2 4064375 4065496 D mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; hypothetical protein 4064375..4065496 Pectobacterium atrosepticum SCRI1043 2883055 YP_051705.1 CDS prfH NC_004547.2 4065493 4066116 D similar to release factor 1 and 2; peptide chain release factor-like protein 4065493..4066116 Pectobacterium atrosepticum SCRI1043 2882309 YP_051706.1 CDS ECA3618 NC_004547.2 4066153 4066614 R hypothetical protein complement(4066153..4066614) Pectobacterium atrosepticum SCRI1043 2883056 YP_051707.1 CDS ECA3619 NC_004547.2 4067108 4067416 D in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; biofilm stress and motility protein A 4067108..4067416 Pectobacterium atrosepticum SCRI1043 2884497 YP_051708.1 CDS ECA3620 NC_004547.2 4067480 4067878 R Similar to Salmonella typhimurium inner membrane protein yjfl or stm4374 SWALL:Q8ZK97 (EMBL:AE008905) (132 aa) fasta scores: E(): 2.3e-31, 63.63% id in 132 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yjfl yjfl or b4184 or z5791 or ecs5160 SWALL:YJFL_ECOLI (SWALL:P39294) (132 aa) fasta scores: E(): 6.8e-31, 61.36% id in 132 aa; hypothetical protein complement(4067480..4067878) Pectobacterium atrosepticum SCRI1043 2884498 YP_051709.1 CDS ECA3621 NC_004547.2 4067902 4068636 R Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase complement(4067902..4068636) Pectobacterium atrosepticum SCRI1043 2884499 YP_051710.1 CDS rnr NC_004547.2 4068739 4071195 R 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R complement(4068739..4071195) Pectobacterium atrosepticum SCRI1043 2885034 YP_051711.1 CDS ECA3623 NC_004547.2 4071237 4071662 R negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR complement(4071237..4071662) Pectobacterium atrosepticum SCRI1043 2885609 YP_051712.1 CDS ECA3624 NC_004547.2 4071959 4073530 D Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 1.8e-51, 37.21% id in 524 aa; methyl-accepting chemotaxis protein 4071959..4073530 Pectobacterium atrosepticum SCRI1043 2885610 YP_051713.1 CDS ECA3625 NC_004547.2 4074061 4075893 D Similar to Agrobacterium tumefaciens McpA SWALL:O68016 (EMBL:AF010180) (579 aa) fasta scores: E(): 1.9e-31, 36.54% id in 249 aa, and to Xanthomonas axonopodis chemotaxis protein mcpa or xac1746 SWALL:Q8PLP7 (EMBL:AE011806) (684 aa) fasta scores: E(): 1.3e-35, 36.56% id in 268 aa; hypothetical protein 4074061..4075893 Pectobacterium atrosepticum SCRI1043 2885611 YP_051714.1 CDS ECA3626 NC_004547.2 4075862 4076878 R Similar to Escherichia coli hypothetical protein yggr or b2950 SWALL:YGGR_ECOLI (SWALL:P52052) (326 aa) fasta scores: E(): 4e-63, 60.67% id in 328 aa, and to Yersinia pestis hypothetical protein Ypo0940 SWALL:Q8ZHF9 (EMBL:AJ414145) (358 aa) fasta scores: E(): 1.4e-65, 60.92% id in 325 aa; type II/IV secretion system protein complement(4075862..4076878) Pectobacterium atrosepticum SCRI1043 2885548 YP_051715.1 CDS ECA3627 NC_004547.2 4076900 4077613 D Similar to Yersinia pestis hypothetical protein Ypo0941 SWALL:Q8ZHF8 (EMBL:AJ414145) (232 aa) fasta scores: E(): 3.2e-62, 72.65% id in 234 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical upf0001 protein yggs or b2951 or c3537 or z4296 or ecs3826 SWALL:YGGS_ECOLI (SWALL:P52054) (234 aa) fasta scores: E(): 2.5e-61, 71.67% id in 233 aa; alanine racemase 4076900..4077613 Pectobacterium atrosepticum SCRI1043 2885549 YP_051716.1 CDS proC NC_004547.2 4077711 4078532 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 4077711..4078532 Pectobacterium atrosepticum SCRI1043 2885408 YP_051717.1 CDS ECA3629 NC_004547.2 4078582 4079136 D Similar to Yersinia pestis membrane protein ypo0943 or y3329 SWALL:Q8ZHF6 (EMBL:AJ414145) (184 aa) fasta scores: E(): 5.8e-58, 78.26% id in 184 aa, and to Vibrio cholerae hypothetical protein Vc0459 SWALL:Q9KUQ6 (EMBL:AE004132) (185 aa) fasta scores: E(): 2.3e-42, 56.21% id in 185 aa; hypothetical protein 4078582..4079136 Pectobacterium atrosepticum SCRI1043 2885550 YP_051718.1 CDS ECA3630 NC_004547.2 4079133 4079423 D Similar to Salmonella typhi hypothetical upf0235 protein yggu or sty3255 or t3014 SWALL:AAO70566 (EMBL:AL627277) (96 aa) fasta scores: E(): 1.1e-27, 78.12% id in 96 aa, and to Escherichia coli hypothetical upf0235 protein yggu or b2953 SWALL:YGGU_ECOLI (SWALL:P52060) (96 aa) fasta scores: E(): 2.6e-26, 76.84% id in 95 aa; hypothetical protein 4079133..4079423 Pectobacterium atrosepticum SCRI1043 2885551 YP_051719.1 CDS ECA3631 NC_004547.2 4079441 4080034 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 4079441..4080034 Pectobacterium atrosepticum SCRI1043 2882835 YP_051720.1 CDS ECA3632 NC_004547.2 4080027 4081166 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4080027..4081166 Pectobacterium atrosepticum SCRI1043 2882836 YP_051721.1 CDS ECA3633 NC_004547.2 4081395 4081658 D Similar to Salmonella typhi hypothetical protein Sty3093 SWALL:Q8Z448 (EMBL:AL627276) (118 aa) fasta scores: E(): 4.3e-20, 75.94% id in 79 aa, and to Vibrio cholerae hypothetical protein Vca0360.1 SWALL:YV6A_VIBCH (SWALL:P58093) (80 aa) fasta scores: E(): 1.5e-05, 42.85% id in 77 aa; hypothetical protein 4081395..4081658 Pectobacterium atrosepticum SCRI1043 2882837 YP_051722.1 CDS ECA3634 NC_004547.2 4081912 4082829 R Similar to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1135 SWALL:Q8YAW6 (EMBL:AE009745) (297 aa) fasta scores: E(): 5.1e-26, 30.66% id in 287 aa, and to Rhizobium meliloti transcription regulator protein r02876 or smc02984 SWALL:Q92LY6 (EMBL:AL591792) (297 aa) fasta scores: E(): 2.4e-28, 33.33% id in 288 aa; LysR family transcriptional regulator complement(4081912..4082829) Pectobacterium atrosepticum SCRI1043 2882713 YP_051723.1 CDS ECA3635 NC_004547.2 4082924 4084141 D Similar to Azotobacter vinelandii AvxA SWALL:Q8KY99 (EMBL:AF238500) (407 aa) fasta scores: E(): 2.7e-19, 26.28% id in 388 aa, and to Aeromonas hydrophila multidrug-resistance protein SWALL:Q9LAA0 (EMBL:AF146029) (409 aa) fasta scores: E(): 4.7e-19, 26.98% id in 404 aa; hypothetical protein 4082924..4084141 Pectobacterium atrosepticum SCRI1043 2882714 YP_051724.1 CDS ECA3636 NC_004547.2 4084384 4084998 D Similar to Proteus vulgaris hypothetical protein orf158 SWALL:Q8KK19 (EMBL:AP004237) (205 aa) fasta scores: E(): 1.4e-44, 59.02% id in 205 aa; hypothetical protein 4084384..4084998 Pectobacterium atrosepticum SCRI1043 2882715 YP_051725.1 CDS ECA3637 NC_004547.2 4085438 4085824 R Similar to Streptococcus thermophilus bacteriophage TP-J34 host cell surface-exposed lipoprotein SWALL:O48388 (EMBL:AF020798) (142 aa) fasta scores: E(): 5.6, 22.9% id in 131 aa; host cell surface-exposed lipoprotein complement(4085438..4085824) Pectobacterium atrosepticum SCRI1043 2882716 YP_051726.1 CDS ecnA NC_004547.2 4086196 4086327 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 entericidin a precursor EcnA or b4147.1 or c5234 or z5753 or ecs5128.1 SWALL:ECNA_ECOLI (SWALL:P56548) (41 aa) fasta scores: E(): 4e-07, 58.14% id in 43 aa; entericidin A 4086196..4086327 Pectobacterium atrosepticum SCRI1043 2881453 YP_051727.1 CDS ECA3639 NC_004547.2 4086421 4086876 R Similar to Salmonella typhimurium, and Salmonella typhi acyltransferase ElaA or stm2312 or sty2543 SWALL:Q8XG97 (EMBL:AE008803) (153 aa) fasta scores: E(): 1.5e-28, 54.54% id in 143 aa, and to Escherichia coli, and Shigella flexneri protein ElaA or b2267 or sf2346 SWALL:ELAA_ECOLI (SWALL:P52077) (153 aa) fasta scores: E(): 1.5e-27, 51.74% id in 143 aa; acyltransferase complement(4086421..4086876) Pectobacterium atrosepticum SCRI1043 2882771 YP_051728.1 CDS ECA3640 NC_004547.2 4086889 4088112 R Similar to Yersinia pestis membrane protein ypo0792 or y3180 SWALL:Q8ZHU2 (EMBL:AJ414144) (406 aa) fasta scores: E(): 8.3e-111, 76.72% id in 391 aa, and to Salmonella typhimurium efflux protein, resistance protein yged or stm3009 SWALL:Q8ZMA5 (EMBL:AE008838) (400 aa) fasta scores: E(): 2e-108, 75.31% id in 401 aa; lysophospholipid transporter LplT complement(4086889..4088112) Pectobacterium atrosepticum SCRI1043 2882772 YP_051729.1 CDS aas NC_004547.2 4088109 4090325 R Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase complement(4088109..4090325) Pectobacterium atrosepticum SCRI1043 2885271 YP_051730.1 CDS ECA3642 NC_004547.2 4090959 4092614 D Similar to Rahnella aquatilis methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 7.3e-64, 42.31% id in 553 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar or CheM or stm1919 SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 4.3e-56, 41.27% id in 550 aa; methyl-accepting chemotaxis protein 4090959..4092614 Pectobacterium atrosepticum SCRI1043 2882773 YP_051731.1 CDS ECA3643 NC_004547.2 4093013 4093480 R Similar to Shewanella oneidensis acetyltransferase, GnaT family so4489 SWALL:AAN57454 (EMBL:AE015881) (154 aa) fasta scores: E(): 3.8e-09, 28.28% id in 152 aa, and to Agrobacterium tumefaciens hypothetical protein atu2342 or agr_c_4255 SWALL:Q8UCY6 (EMBL:AE009183) (171 aa) fasta scores: E(): 4.2e-08, 30.88% id in 136 aa; GnaT-family acetyltransferase complement(4093013..4093480) Pectobacterium atrosepticum SCRI1043 2882741 YP_051732.1 CDS ECA3644 NC_004547.2 4093483 4094250 R Similar to Escherichia coli uxu operon transcriptional regulator UxuR or b4324 SWALL:UXUR_ECOLI (SWALL:P39161) (257 aa) fasta scores: E(): 3.4e-39, 48.58% id in 247 aa, and to Yersinia pestis transcriptional regulatory protein ypo1279 or uxur or y2904 SWALL:Q8ZGL0 (EMBL:AJ414147) (266 aa) fasta scores: E(): 3.5e-46, 51.98% id in 252 aa; GntR family transcriptional regulator complement(4093483..4094250) Pectobacterium atrosepticum SCRI1043 2882742 YP_051733.1 CDS ECA3645 NC_004547.2 4094469 4094786 R Similar to Bacillus subtilis PTS system, lichenan-specific IIb component LicB or CelA SWALL:PTCB_BACSU (SWALL:P46318) (102 aa) fasta scores: E(): 2.9e-11, 46% id in 100 aa; PTS system lichenan-specific transporter subunit IIB complement(4094469..4094786) Pectobacterium atrosepticum SCRI1043 2882743 YP_051734.1 CDS celH NC_004547.2 4094816 4096252 R Similar to Bacillus pumilus 6-phospho-beta-glucosidase CelH SWALL:Q8KP27 (EMBL:AY124778) (466 aa) fasta scores: E(): 5.1e-82, 42.98% id in 463 aa; 6-phospho-beta-glucosidase complement(4094816..4096252) Pectobacterium atrosepticum SCRI1043 2882540 YP_051735.1 CDS licC NC_004547.2 4096277 4097614 R Similar to Bacillus subtilis PTS system, lichenan-specific IIc component LicC or CelB SWALL:PTCC_BACSU (SWALL:P46317) (452 aa) fasta scores: E(): 3.3e-46, 33.7% id in 448 aa; PTS system lichenan-specific transporter subunit IIC complement(4096277..4097614) Pectobacterium atrosepticum SCRI1043 2883215 YP_051736.1 CDS ECA3648 NC_004547.2 4097901 4098245 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 6.3e-14, 43.86% id in 114 aa; PTS system cellobiose-specific transporter subunit IIA 4097901..4098245 Pectobacterium atrosepticum SCRI1043 2882875 YP_051737.1 CDS ECA3649 NC_004547.2 4098379 4099404 D Similar to Escherichia coli cryptic asc operon repressor AscG or b2714 SWALL:ASCG_ECOLI (SWALL:P24242) (336 aa) fasta scores: E(): 1.1e-52, 46.22% id in 331 aa; transcriptional repressor 4098379..4099404 Pectobacterium atrosepticum SCRI1043 2882876 YP_051738.1 CDS ECA3650 NC_004547.2 4099428 4099982 R Similar to Salmonella typhi DNA-binding protein sty3832 SWALL:Q8Z2V1 (EMBL:AL627279) (188 aa) fasta scores: E(): 2.3e-32, 53.37% id in 178 aa, and to Agrobacterium tumefaciens Tiorf88 protein tiorf88 SWALL:Q9R6H1 (EMBL:AB016260) (163 aa) fasta scores: E(): 1e-21, 42.5% id in 160 aa; DNA-binding protein complement(4099428..4099982) Pectobacterium atrosepticum SCRI1043 2882877 YP_051739.1 CDS ECA3651 NC_004547.2 4100167 4101123 D Similar to Rhizobium loti hypothetical protein Mlr3911 SWALL:Q98F65 (EMBL:AP003003) (301 aa) fasta scores: E(): 5.7e-63, 58.68% id in 288 aa, and to Pseudomonas putida membrane protein, pp4307 SWALL:AAN69887 (EMBL:AE016790) (307 aa) fasta scores: E(): 2.2e-59, 54.86% id in 288 aa; hypothetical protein 4100167..4101123 Pectobacterium atrosepticum SCRI1043 2882878 YP_051740.1 CDS lysA NC_004547.2 4101120 4102382 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(4101120..4102382) Pectobacterium atrosepticum SCRI1043 2882263 YP_051741.1 CDS lysR NC_004547.2 4102518 4103441 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; LysR family transcriptional regulator 4102518..4103441 Pectobacterium atrosepticum SCRI1043 2882301 YP_051742.1 CDS ECA3654 NC_004547.2 4103468 4104376 R Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo0799 or y3187 SWALL:Q8ZHT5 (EMBL:AJ414144) (302 aa) fasta scores: E(): 3e-85, 71.38% id in 297 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0056 SWALL:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 5e-70, 61.27% id in 297 aa; LysR family transcriptional regulator complement(4103468..4104376) Pectobacterium atrosepticum SCRI1043 2885498 YP_051743.1 CDS ECA3655 NC_004547.2 4104484 4105365 D Similar to Yersinia pestis exported protein ypo0800 SWALL:Q8ZHT4 (EMBL:AJ414144) (295 aa) fasta scores: E(): 1.1e-70, 64.84% id in 293 aa, and to Shewanella oneidensis metallo-beta-lactamase family protein so3474 SWALL:AAN56467 (EMBL:AE015783) (299 aa) fasta scores: E(): 4.7e-56, 52.06% id in 290 aa; hypothetical protein 4104484..4105365 Pectobacterium atrosepticum SCRI1043 2885499 YP_051744.1 CDS ECA3656 NC_004547.2 4105353 4106009 D Similar to Yersinia pestis hypothetical protein ypo0801 or y3189 SWALL:Q8ZHT3 (EMBL:AJ414144) (211 aa) fasta scores: E(): 9.3e-45, 55.23% id in 210 aa, and to Ralstonia solanacearum hypothetical protein rsc1444 or rs03863 SWALL:Q8XZF7 (EMBL:AL646064) (242 aa) fasta scores: E(): 1e-44, 52.29% id in 218 aa; hypothetical protein 4105353..4106009 Pectobacterium atrosepticum SCRI1043 2885500 YP_051745.1 CDS ECA3657 NC_004547.2 4106203 4106496 D hypothetical protein 4106203..4106496 Pectobacterium atrosepticum SCRI1043 2882344 YP_051746.1 CDS ECA3658 NC_004547.2 4106532 4107239 D hypothetical protein 4106532..4107239 Pectobacterium atrosepticum SCRI1043 2882345 YP_051747.1 CDS ECA3659 NC_004547.2 4107617 4109308 D Similar to Escherichia coli O6 conserved hypothetical protein c5426 SWALL:Q8FA84 (EMBL:AE016772) (557 aa) fasta scores: E(): 3.9e-29, 25.84% id in 565 aa, and to Bifidobacterium longum hypothetical protein bl1400 SWALL:Q8G4I2 (EMBL:AE014770) (701 aa) fasta scores: E(): 5.8e-31, 28.45% id in 594 aa; hypothetical protein 4107617..4109308 Pectobacterium atrosepticum SCRI1043 2882346 YP_051748.1 CDS ECA3660 NC_004547.2 4109655 4110677 D Similar to Salmonella typhi hypothetical protein Sty4439 SWALL:Q8Z1T1 (EMBL:AL627282) (332 aa) fasta scores: E(): 1.2e-105, 79.26% id in 328 aa, and to Escherichia coli O6 hypothetical protein yjbn or c5018 SWALL:AAN83444 (EMBL:AE016770) (331 aa) fasta scores: E(): 3.8e-105, 82.22% id in 315 aa; tRNA-dihydrouridine synthase A 4109655..4110677 Pectobacterium atrosepticum SCRI1043 2882347 YP_051749.1 CDS pspG NC_004547.2 4110844 4111116 D coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G 4110844..4111116 Pectobacterium atrosepticum SCRI1043 2882417 YP_051750.1 CDS ECA3662 NC_004547.2 4111564 4112952 R Similar to Bacillus halodurans cytochrome P450 hydroxylase bh0579 SWALL:Q9KFA6 (EMBL:AP001509) (453 aa) fasta scores: E(): 2.2e-24, 26.19% id in 462 aa, and to Vicia sativa cytochrome P450 94a1 cyp94a1 or vagh111 SWALL:C941_VICSA (SWALL:O81117) (514 aa) fasta scores: E(): 2.2e-23, 25.88% id in 483 aa; cytochrome complement(4111564..4112952) Pectobacterium atrosepticum SCRI1043 2882418 YP_051751.1 CDS qor NC_004547.2 4113273 4114259 R Similar to Escherichia coli quinone oxidoreductase Qor or Hcz or b4051 SWALL:QOR_ECOLI (SWALL:P28304) (327 aa) fasta scores: E(): 3.6e-91, 75.22% id in 327 aa; quinone oxidoreductase complement(4113273..4114259) Pectobacterium atrosepticum SCRI1043 2882686 YP_051752.1 CDS dnaB NC_004547.2 4114440 4115846 D unwinds double stranded DNA; replicative DNA helicase 4114440..4115846 Pectobacterium atrosepticum SCRI1043 2882800 YP_051753.1 CDS alr NC_004547.2 4115888 4116970 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4115888..4116970 Pectobacterium atrosepticum SCRI1043 2884196 YP_051754.1 CDS ECA3666 NC_004547.2 4116963 4117631 D hypothetical protein 4116963..4117631 Pectobacterium atrosepticum SCRI1043 2882419 YP_051755.1 CDS ECA3667 NC_004547.2 4117795 4118124 D Similar to Xylella fastidiosa hypothetical protein Xf0898 xf0898 SWALL:Q9PEY0 (EMBL:AE003929) (117 aa) fasta scores: E(): 2.8e-07, 38.46% id in 91 aa, and to Pectobacterium carotovorum subsp. carotovorum outer membrane lipoprotein Pcp SWALL:Q9RB08 (EMBL:AF168687) (155 aa) fasta scores: E(): 1.8, 29.78% id in 94 aa; lipoprotein 4117795..4118124 Pectobacterium atrosepticum SCRI1043 2883120 YP_051756.1 CDS ECA3668 NC_004547.2 4118250 4118720 D Similar to Bradyrhizobium japonicum transcriptional regulatory protein blr0340 SWALL:BAC45605 (EMBL:AP005936) (167 aa) fasta scores: E(): 1.4e-26, 52.02% id in 148 aa, and to Rhizobium meliloti transcription regulator protein r02941 or smc03210 SWALL:Q92LT2 (EMBL:AL591792) (159 aa) fasta scores: E(): 1.6e-20, 45.16% id in 155 aa; transcriptional regulator AsnC 4118250..4118720 Pectobacterium atrosepticum SCRI1043 2883121 YP_051757.1 CDS ECA3669 NC_004547.2 4118940 4119590 D Similar to Brucella melitensis hypothetical membrane spanning protein Bmei1312 SWALL:Q8YG50 (EMBL:AE009569) (217 aa) fasta scores: E(): 6.6e-41, 52.21% id in 203 aa, and to Vibrio vulnificus uncharacterized conserved protein vv21211 SWALL:AAO08108 (EMBL:AE016812) (202 aa) fasta scores: E(): 2.5e-37, 54.92% id in 193 aa; hypothetical protein 4118940..4119590 Pectobacterium atrosepticum SCRI1043 2883122 YP_051758.1 CDS tyrB NC_004547.2 4119655 4120848 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4119655..4120848 Pectobacterium atrosepticum SCRI1043 2884224 YP_051759.1 CDS ECA3671 NC_004547.2 4121033 4121530 D Similar to Pseudomonas putida conserved hypothetical protein pp4958 SWALL:AAN70525 (EMBL:AE016792) (179 aa) fasta scores: E(): 4.7e-39, 59.25% id in 162 aa, and to Escherichia coli hypothetical protein ygjp or b3085 SWALL:YGJP_ECOLI (SWALL:P42597) (179 aa) fasta scores: E(): 2.5e-38, 61.14% id in 157 aa; hypothetical protein 4121033..4121530 Pectobacterium atrosepticum SCRI1043 2882618 YP_051760.1 CDS ECA3672 NC_004547.2 4121651 4122130 D Similar to Escherichia coli O6 conserved hypothetical protein c3767 SWALL:AAN82211 (EMBL:AE016766) (159 aa) fasta scores: E(): 1.4e-29, 51.28% id in 156 aa, and to Yersinia pestis membrane protein ypo2793 or y1136 SWALL:AAM84714 (EMBL:AJ414153) (190 aa) fasta scores: E(): 3.7e-51, 79.48% id in 156 aa; hypothetical protein 4121651..4122130 Pectobacterium atrosepticum SCRI1043 2882619 YP_051761.1 CDS ECA3673 NC_004547.2 4122179 4122517 R Similar to Yersinia pestis membrane protein ypo2790 SWALL:Q8ZD08 (EMBL:AJ414153) (133 aa) fasta scores: E(): 3.7e-26, 68.62% id in 102 aa; hypothetical protein complement(4122179..4122517) Pectobacterium atrosepticum SCRI1043 2882620 YP_051762.1 CDS ECA3674 NC_004547.2 4122637 4123044 R Similar to Yersinia pestis membrane protein ypo2790 SWALL:Q8ZD08 (EMBL:AJ414153) (133 aa) fasta scores: E(): 5e-30, 57.57% id in 132 aa; hypothetical protein complement(4122637..4123044) Pectobacterium atrosepticum SCRI1043 2882621 YP_051763.1 CDS ECA3675 NC_004547.2 4123037 4123897 R Similar to Yersinia pestis hypothetical protein ypo2788 or y1139 SWALL:Q8ZD09 (EMBL:AJ414153) (193 aa) fasta scores: E(): 5.5e-56, 73.95% id in 192 aa; hypothetical protein complement(4123037..4123897) Pectobacterium atrosepticum SCRI1043 2882052 YP_051764.1 CDS ECA3676 NC_004547.2 4124255 4124668 D Similar to Vibrio metschnikovii Orfc273-4 orfc273-4 SWALL:Q8GNE0 (EMBL:AF530480) (111 aa) fasta scores: E(): 1.9e-14, 51.37% id in 109 aa; hypothetical protein 4124255..4124668 Pectobacterium atrosepticum SCRI1043 2882053 YP_051765.1 CDS ECA3677 NC_004547.2 4125449 4125685 D Similar to Vibrio metschnikovii Orfc273-4 orfc273-4 SWALL:AAN33037 (EMBL:AF530480) (111 aa) fasta scores: E(): 1.2e-07, 51.42% id in 70 aa; hypothetical protein 4125449..4125685 Pectobacterium atrosepticum SCRI1043 2882054 YP_051766.1 CDS ECA3678 NC_004547.2 4125836 4126090 R hypothetical protein complement(4125836..4126090) Pectobacterium atrosepticum SCRI1043 2881315 YP_051767.1 CDS ECA3679 NC_004547.2 4126156 4127136 D Similar to Yersinia pestis hypothetical protein Ypo2468 SWALL:Q8ZDT8 (EMBL:AJ414152) (328 aa) fasta scores: E(): 8.6e-104, 76.38% id in 326 aa, and to Pasteurella multocida hypothetical protein Pm0311 SWALL:Q9CNW2 (EMBL:AE006067) (326 aa) fasta scores: E(): 1.4e-73, 59.93% id in 312 aa; hypothetical protein 4126156..4127136 Pectobacterium atrosepticum SCRI1043 2881316 YP_051768.1 CDS ECA3680 NC_004547.2 4127133 4130429 D Similar to Yersinia pestis hypothetical protein ypo2467 or y1723 SWALL:Q8ZDT9 (EMBL:AJ414152) (1095 aa) fasta scores: E(): 0, 59.17% id in 1112 aa, and to Pasteurella multocida hypothetical protein Pm0312 SWALL:Q9CNW1 (EMBL:AE006067) (1106 aa) fasta scores: E(): 2.7e-158, 40.62% id in 1125 aa; hypothetical protein 4127133..4130429 Pectobacterium atrosepticum SCRI1043 2881317 YP_051769.1 CDS ECA3681 NC_004547.2 4130795 4132126 D Similar to Yersinia pestis hypothetical protein ypo2465 or y1724 SWALL:Q8ZDU1 (EMBL:AJ414152) (448 aa) fasta scores: E(): 1.1e-79, 51.14% id in 438 aa, and to Pasteurella multocida hypothetical protein Pm0305 SWALL:Q9CNW8 (EMBL:AE006066) (444 aa) fasta scores: E(): 2.2e-20, 28.25% id in 446 aa; hypothetical protein 4130795..4132126 Pectobacterium atrosepticum SCRI1043 2881318 YP_051770.1 CDS ECA3682 NC_004547.2 4132123 4133055 D Similar to Yersinia pestis hypothetical protein ypo2464 or y1725 SWALL:Q8ZDU2 (EMBL:AJ414152) (316 aa) fasta scores: E(): 3.2e-72, 62.91% id in 302 aa, and to Pasteurella multocida hypothetical protein Pm0306 SWALL:Q9CNW7 (EMBL:AE006066) (327 aa) fasta scores: E(): 7.8e-11, 32.4% id in 324 aa; hypothetical protein 4132123..4133055 Pectobacterium atrosepticum SCRI1043 2881828 YP_051771.1 CDS ECA3683 NC_004547.2 4133069 4134082 D Similar to Yersinia pestis hypothetical protein ypo2463 or y1726 SWALL:Q8ZDU3 (EMBL:AJ414152) (334 aa) fasta scores: E(): 2.1e-96, 74.63% id in 339 aa, and to Pasteurella multocida hypothetical protein Pm0307 SWALL:Q9CNW6 (EMBL:AE006066) (335 aa) fasta scores: E(): 9.6e-63, 53.73% id in 335 aa; hypothetical protein 4133069..4134082 Pectobacterium atrosepticum SCRI1043 2881829 YP_051772.1 CDS ECA3684 NC_004547.2 4134092 4134646 D Similar to Yersinia pestis hypothetical protein ypo2462 or y1727 SWALL:Q8ZDU4 (EMBL:AJ414152) (184 aa) fasta scores: E(): 4.7e-43, 60.32% id in 184 aa, and to Pasteurella multocida hypothetical protein Pm0308 SWALL:Q9CNW5 (EMBL:AE006066) (186 aa) fasta scores: E(): 1.8e-11, 29.94% id in 187 aa; hypothetical protein 4134092..4134646 Pectobacterium atrosepticum SCRI1043 2881830 YP_051773.1 CDS ECA3685 NC_004547.2 4134672 4134926 R Similar to Vibrio metschnikovii Orfc273-4 orfc273-4 SWALL:AAN33037 (EMBL:AF530480) (111 aa) fasta scores: E(): 0.039, 49.02% id in 51 aa, and to Escherichia coli O6 hypothetical protein c1020 SWALL:AAN79492 (EMBL:AE016758) (130 aa) fasta scores: E(): 0.34, 36.61% id in 71 aa; hypothetical protein complement(4134672..4134926) Pectobacterium atrosepticum SCRI1043 2882603 YP_051774.1 CDS mcK NC_004547.2 4135032 4135448 R Similar to Salmonella typhimurium McK protein SWALL:Q8L237 (EMBL:AP005147) (138 aa) fasta scores: E(): 1.3e-40, 76.81% id in 138 aa, and to Salmonella typhimurium nucleic acid-binding protein, contains pin domain stm3033 SWALL:Q8ZM86 (EMBL:AE008839) (132 aa) fasta scores: E(): 2.6e-16, 42.42% id in 132 aa; plasmid-like protein complement(4135032..4135448) Pectobacterium atrosepticum SCRI1043 2881439 YP_051775.1 CDS vagC NC_004547.2 4135445 4135672 R Similar to Salmonella dublin virulence-associated protein VagC SWALL:VAGC_SALDU (SWALL:Q05459) (76 aa) fasta scores: E(): 3.8e-22, 77.63% id in 76 aa, and to Salmonella typhimurium Kor protein Kor SWALL:Q8L236 (EMBL:AP005147) (76 aa) fasta scores: E(): 6.3e-22, 76.31% id in 76 aa.; plasmid-associated protein complement(4135445..4135672) Pectobacterium atrosepticum SCRI1043 2882786 YP_051776.1 CDS ECA3688 NC_004547.2 4136630 4137049 R Similar to Vibrio cholerae hypothetical protein Vc0373 SWALL:Q9KUY5 (EMBL:AE004125) (139 aa) fasta scores: E(): 4e-37, 64.02% id in 139 aa, and to Pseudomonas stutzeri pa5286-like protein SWALL:Q8RPA9 (EMBL:AF414717) (141 aa) fasta scores: E(): 2.1e-34, 60.87% id in 138 aa; hypothetical protein complement(4136630..4137049) Pectobacterium atrosepticum SCRI1043 2882604 YP_051777.1 CDS uvrA NC_004547.2 4137067 4139901 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(4137067..4139901) Pectobacterium atrosepticum SCRI1043 2882959 YP_051778.1 CDS ssb NC_004547.2 4140147 4140710 D binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4140147..4140710 Pectobacterium atrosepticum SCRI1043 2884351 YP_051779.1 CDS ECA3691 NC_004547.2 4141061 4142812 D Similar to Ralstonia solanacearum probable signal peptide protein rsp1459 or rs03085 SWALL:Q8XQ27 (EMBL:AL646085) (574 aa) fasta scores: E(): 3.5e-102, 49% id in 553 aa, and to Brucella suis conserved hypothetical protein bra1172 SWALL:Q8FUP8 (EMBL:AE014610) (560 aa) fasta scores: E(): 2.4e-79, 42.98% id in 549 aa; hypothetical protein 4141061..4142812 Pectobacterium atrosepticum SCRI1043 2882605 YP_051780.1 CDS ECA3692 NC_004547.2 4143007 4143462 D Similar to Pseudomonas aeruginosa probable acetyltransferase pa4166 SWALL:Q9HWL5 (EMBL:AE004833) (152 aa) fasta scores: E(): 3.5e-38, 58.62% id in 145 aa, and to Acinetobacter sp. ADP1 hypothetical 18.3 kDa protein SWALL:O24837 (EMBL:AF009672) (155 aa) fasta scores: E(): 3.5e-32, 53.79% id in 145 aa; acetyltransferase 4143007..4143462 Pectobacterium atrosepticum SCRI1043 2881524 YP_051781.1 CDS ECA3693 NC_004547.2 4143714 4144145 R Similar to Escherichia coli O157:H7 hypothetical protein z3974 or ecs3535 SWALL:Q8X921 (EMBL:AE005496) (143 aa) fasta scores: E(): 3.2e-34, 62.67% id in 142 aa, and to Salmonella typhimurium cytoplasmic protein stm2804 SWALL:Q8ZML2 (EMBL:AE008828) (143 aa) fasta scores: E(): 1e-31, 61.26% id in 142 aa; hypothetical protein complement(4143714..4144145) Pectobacterium atrosepticum SCRI1043 2881525 YP_051782.1 CDS ECA3694 NC_004547.2 4144286 4144420 R Similar to the C-terminal regions of Escherichia coli PhnO protein or b4093 SWALL:PHNO_ECOLI (SWALL:P16691) (144 aa) fasta scores: E(): 1.7, 37.2% id in 43 aa, and to Streptomyces griseus regulatory protein for c-p lyase PhnO-likE SWALL:Q54244 (EMBL:D29961) (150 aa) fasta scores: E(): 0.29, 35.71% id in 42 aa; hypothetical protein complement(4144286..4144420) Pectobacterium atrosepticum SCRI1043 2881526 YP_051783.1 CDS ECA3695 NC_004547.2 4144591 4144983 R Similar to Bacteriophage Mu positive regulator of late transcription C SWALL:VPC_BPMU (SWALL:P06022) (140 aa) fasta scores: E(): 0.00077, 32.14% id in 112 aa and to Erwinia carotovora DNA-binding protein RdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta scores: E(): 1.8e-22, 60.19% id in 103 aa, and to Salmonella typhi bacteriophage transcriptional regulator sty1591 SWALL:Q8Z6X3 (EMBL:AL627270) (129 aa) fasta scores: E(): 5.5e-35, 67.44% id in 129 aa. Also similar to ECA2437 (59.259% id. in 108 aa overlap); phage regulatory protein complement(4144591..4144983) Pectobacterium atrosepticum SCRI1043 2881527 YP_051784.1 CDS ECA3696 NC_004547.2 4144980 4145402 R Similar to Bacteriophage Mu protein gemA SWALL:VG16_BPMU (SWALL:Q38494) (183 aa) fasta scores: E(): 1.3e-16, 43.66% id in 142 aa, and to Salmonella typhi hypothetical protein Sty1592 sty1592 SWALL:Q8Z6X2 (EMBL:AL627270) (150 aa) fasta scores: E(): 2.8e-32, 64.44% id in 135 aa; phage regluatory protein complement(4144980..4145402) Pectobacterium atrosepticum SCRI1043 2882591 YP_051785.1 CDS ECA3697 NC_004547.2 4145380 4145580 R Similar to Yersinia pestis hypothetical y1850 SWALL:AAM85417 (EMBL:AE013788) (64 aa) fasta scores: E(): 4.8e-13, 58.06% id in 62 aa; hypothetical protein complement(4145380..4145580) Pectobacterium atrosepticum SCRI1043 2882592 YP_051786.1 CDS ECA3698 NC_004547.2 4145577 4146017 R Similar to Escherichia coli O157:H7 hypothetical protein Ecs4949 ecs4949 SWALL:Q8X340 (EMBL:AP002567) (93 aa) fasta scores: E(): 4.7e-05, 39.02% id in 82 aa; hypothetical protein complement(4145577..4146017) Pectobacterium atrosepticum SCRI1043 2882593 YP_051787.1 CDS ECA3699 NC_004547.2 4146028 4146327 R Similar to Salmonella typhi hypothetical protein Sty1598 SWALL:Q8Z6W6 (EMBL:AL627270) (100 aa) fasta scores: E(): 8.5e-17, 58.16% id in 98 aa, and to Neisseria meningitidis phosphoribosyl-ATP pyrophosphatase HisE or nma0807 SWALL:HIS2_NEIMA (SWALL:Q9JVJ9) (107 aa) fasta scores: E(): 6.2, 35.71% id in 84 aa; phage-like protein complement(4146028..4146327) Pectobacterium atrosepticum SCRI1043 2881649 YP_051788.1 CDS ECA3700 NC_004547.2 4146418 4147026 R Similar to Neisseria meningitidis hypothetical protein nma1871 or rth11 SWALL:Q9JRE4 (EMBL:AL162757) (203 aa) fasta scores: E(): 7e-29, 41% id in 200 aa, and to Shewanella oneidensis conserved hypothetical protein so0648 SWALL:AAN53726 (EMBL:AE015511) (208 aa) fasta scores: E(): 1.5e-21, 33.84% id in 195 aa; phage-like protein complement(4146418..4147026) Pectobacterium atrosepticum SCRI1043 2881650 YP_051789.1 CDS ECA3701 NC_004547.2 4147039 4147308 R Similar to Salmonella typhi hypothetical protein Sty1602 SWALL:Q8Z6W3 (EMBL:AL627270) (89 aa) fasta scores: E(): 4.7e-16, 46.59% id in 88 aa; phage-like protein complement(4147039..4147308) Pectobacterium atrosepticum SCRI1043 2881651 YP_051790.1 CDS ECA3702 NC_004547.2 4147336 4147593 R phage-like protein complement(4147336..4147593) Pectobacterium atrosepticum SCRI1043 2881652 YP_051791.1 CDS ECA3703 NC_004547.2 4147596 4148747 R Similar to Salmonella typhi Eha SWALL:O87649 (EMBL:AF091717) (322 aa) fasta scores: E(): 1.5e-63, 86.9% id in 229 aa, and to Vibrio cholerae Eha protein vc1798 SWALL:Q9KR48 (EMBL:AE004256) (383 aa) fasta scores: E(): 6.4e-25, 40.15% id in 386 aa; phage-like protein complement(4147596..4148747) Pectobacterium atrosepticum SCRI1043 2882561 YP_051792.1 CDS ECA3704 NC_004547.2 4148757 4150526 R Similar to Salmonella typhi hypothetical protein Sty1604 SWALL:Q8Z6W2 (EMBL:AL627270) (589 aa) fasta scores: E(): 4.3e-189, 82% id in 589 aa, and to Vibrio cholerae hypothetical protein Vc1799 SWALL:Q9KR47 (EMBL:AE004256) (585 aa) fasta scores: E(): 1.4e-49, 33.63% id in 559 aa; phage-like protein complement(4148757..4150526) Pectobacterium atrosepticum SCRI1043 2882562 YP_051793.1 CDS ECA3705 NC_004547.2 4150536 4151444 R Similar to Salmonella typhi hypothetical protein Sty1606 SWALL:Q8Z6W0 (EMBL:AL627270) (143 aa) fasta scores: E(): 4.2e-32, 70.62% id in 143 aa, and to Neisseria meningitidis hypothetical protein Nmb1002 SWALL:Q9JZL4 (EMBL:AE002451) (291 aa) fasta scores: E(): 2.2e-23, 34.83% id in 267 aa; phage-like protein complement(4150536..4151444) Pectobacterium atrosepticum SCRI1043 2882563 YP_051794.1 CDS ECA3706 NC_004547.2 4151454 4151759 R Similar to Neisseria meningitidis hypothetical protein Nma1223 SWALL:Q9JUN2 (EMBL:AL162755) (96 aa) fasta scores: E(): 2.4e-06, 37.64% id in 85 aa, and to Brucella melitensis transcriptional regulator, IclR family bmei1717 SWALL:Q8YF10 (EMBL:AE009605) (264 aa) fasta scores: E(): 0.013, 33.76% id in 77 aa; phage-related DNA-binding protein complement(4151454..4151759) Pectobacterium atrosepticum SCRI1043 2881587 YP_051795.1 CDS ECA3707 NC_004547.2 4151812 4152000 R Similar to Neisseria meningitidis hypothetical protein Nmb1004 SWALL:Q9JZL2 (EMBL:AE002451) (81 aa) fasta scores: E(): 5.8e-07, 48.21% id in 56 aa, and to Xanthomonas campestris hypothetical protein Xcc2998 SWALL:Q8P6H1 (EMBL:AE012413) (84 aa) fasta scores: E(): 0.01, 36.06% id in 61 aa; phage-related DNA-binding protein complement(4151812..4152000) Pectobacterium atrosepticum SCRI1043 2881588 YP_051796.1 CDS ECA3708 NC_004547.2 4152092 4152508 D Similar to Ralstonia solanacearum DNA-binding repressor transcription regulator protein rsc1907 or rs03481 SWALL:Q8XY56 (EMBL:AL646067) (173 aa) fasta scores: E(): 3.9e-09, 50.6% id in 83 aa; phage-related DNA-binding protein 4152092..4152508 Pectobacterium atrosepticum SCRI1043 2881589 YP_051797.1 CDS ECA3709 NC_004547.2 4152527 4153063 D phage-related membrane protein 4152527..4153063 Pectobacterium atrosepticum SCRI1043 2881239 YP_051798.1 CDS ECA3710 NC_004547.2 4153098 4154042 D phage-related lipoprotein 4153098..4154042 Pectobacterium atrosepticum SCRI1043 2881240 YP_051799.1 CDS ECA3711 NC_004547.2 4154162 4155169 D Similar to many proteins described as nucleoid-associated proteins e.g. Escherichia coli nucleoid-associated protein NdpA or b2186 SWALL:NDPA_ECOLI (SWALL:P33920) (334 aa) fasta scores: E(): 1.7e-18, 28.22% id in 333 aa. Also similar to many others e.g. Ralstonia oxalatica hypothetical protein SWALL:CAD61113 (EMBL:AJ536756) (340 aa) fasta scores: E(): 8.2e-41, 38.34% id in 326 aa; Similar to , and to Pseudomonas resinovorans hypothetical protein or93 SWALL:BAC41613 (EMBL:AB088420) (333 aa) fasta scores: E(): 1.9e-30, 30.12% id in 332 aa; phage-like protein 4154162..4155169 Pectobacterium atrosepticum SCRI1043 2881241 YP_051800.1 CDS ECA3712 NC_004547.2 4155172 4156353 D Similar to Ralstonia oxalatica hypothetical protein SWALL:CAD61111 (EMBL:AJ536756) (391 aa) fasta scores: E(): 1.4e-33, 33.43% id in 332 aa; phage-related membrane protein 4155172..4156353 Pectobacterium atrosepticum SCRI1043 2881242 YP_051801.1 CDS ECA3713 NC_004547.2 4156501 4156845 D Similar to Salmonella typhi hypothetical protein Sty1608 SWALL:Q8Z6V8 (EMBL:AL627270) (116 aa) fasta scores: E(): 3.5e-27, 76.47% id in 102 aa, and to Salmonella typhimurium inner membrane protein stm4218 SWALL:Q8ZKI7 (EMBL:AE008897) (95 aa) fasta scores: E(): 1.2e-08, 52.94% id in 102 aa; phage-related membrane protein 4156501..4156845 Pectobacterium atrosepticum SCRI1043 2882493 YP_051802.1 CDS ECA3714 NC_004547.2 4156848 4157495 D Similar to Salmonella typhimurium soluble lytic murein transglycosylase stm4217 SWALL:Q8ZKI8 (EMBL:AE008897) (201 aa) fasta scores: E(): 1.9e-52, 67.56% id in 185 aa; phage-related lytic transglycosylase 4156848..4157495 Pectobacterium atrosepticum SCRI1043 2882494 YP_051803.1 CDS ECA3715 NC_004547.2 4157479 4158150 D Similar to Salmonella typhi lipoprotein sty1611 SWALL:Q8Z6V5 (EMBL:AL627270) (216 aa) fasta scores: E(): 3.2e-20, 42.98% id in 228 aa; phage-related lipoprotein 4157479..4158150 Pectobacterium atrosepticum SCRI1043 2882495 YP_051804.1 CDS ECA3716 NC_004547.2 4158150 4158482 D Similar to Salmonella typhimurium inner membrane protein stm4216 SWALL:Q8ZKI9 (EMBL:AE008897) (104 aa) fasta scores: E(): 2.8e-25, 70.29% id in 101 aa, and to Salmonella typhi membrane protein sty1612 SWALL:Q8Z6V4 (EMBL:AL627270) (108 aa) fasta scores: E(): 8.4e-22, 61.11% id in 108 aa; phage-related exported protein 4158150..4158482 Pectobacterium atrosepticum SCRI1043 2881955 YP_051805.1 CDS ECA3717 NC_004547.2 4158475 4158786 D Similar to Salmonella typhi hypothetical protein Sty1613 SWALL:Q8Z6V3 (EMBL:AL627270) (103 aa) fasta scores: E(): 3.7e-38, 93.2% id in 103 aa; phage-like protein 4158475..4158786 Pectobacterium atrosepticum SCRI1043 2881956 YP_051806.1 CDS ECA3718 NC_004547.2 4158788 4159333 D Similar to Bacteriophage Mu protein gp27 SWALL:VG27_BPMU (SWALL:Q9T1W7) (191 aa) fasta scores: E(): 0.0026, 22.87% id in 188 aa. Also similar to Salmonella typhi prophage-related protein Sty1614 SWALL:Q8Z6V2 (EMBL:AL627270) (181 aa) fasta scores: E(): 5.4e-54, 91.16% id in 181 aa; phage-like protein 4158788..4159333 Pectobacterium atrosepticum SCRI1043 2881957 YP_051807.1 CDS ECA3719 NC_004547.2 4159330 4160865 D Similar to Bacteriophage Mu protein gp28 28 SWALL:VG28_BPMU (SWALL:Q9T1W6) (551 aa) fasta scores: E(): 9.8e-83, 47.23% id in 470 aa and Salmonella typhi hypothetical prophage related protein sty1615 SWALL:Q8Z6V1 (EMBL:AL627270) (531 aa) fasta scores: E(): 3.6e-189, 89.08% id in 513 aa; phage-like protein 4159330..4160865 Pectobacterium atrosepticum SCRI1043 2881958 YP_051808.1 CDS ECA3720 NC_004547.2 4160865 4162358 D Similar to Bacteriophage Mu protein gp29 29 SWALL:VG29_BPMU (SWALL:Q9T1W5) (512 aa) fasta scores: E(): 1.2e-15, 26.52% id in 524 aa and to Salmonella typhi prophage related-protein Sty1616 SWALL:Q8Z6V0 (EMBL:AL627270) (498 aa) fasta scores: E(): 9.4e-146, 72.9% id in 502 aa; phage-like protein 4160865..4162358 Pectobacterium atrosepticum SCRI1043 2881445 YP_051809.1 CDS ECA3721 NC_004547.2 4162339 4163160 D Similar to Bacteriophage Mu F protein or Gp30 SWALL:VPF_BPMU (SWALL:Q01259) (439 aa) fasta scores: E(): 1e-43, 44.65% id in 262 aa and Salmonella typhi hypothetical protein Sty1617 SWALL:Q8Z6U9 (EMBL:AL627270) (273 aa) fasta scores: E(): 9.7e-98, 80.44% id in 271 aa; phage-like protein 4162339..4163160 Pectobacterium atrosepticum SCRI1043 2881446 YP_051810.1 CDS ECA3722 NC_004547.2 4163157 4163606 D Similar to Bacteriophage Mu g protein g or 31 SWALL:VPG_BPMU (SWALL:Q01261) (156 aa) fasta scores: E(): 0.003, 31.09% id in 164 aa and to Salmonella typhi bacteriophage protein sty1618 SWALL:Q8Z6U8 (EMBL:AL627270) (152 aa) fasta scores: E(): 1.2e-35, 71.23% id in 146 aa; phage-like protein 4163157..4163606 Pectobacterium atrosepticum SCRI1043 2881447 YP_051811.1 CDS ECA3723 NC_004547.2 4163802 4164911 D Similar to Salmonella typhi hypothetical protein Sty1619 SWALL:Q8Z6U7 (EMBL:AL627270) (371 aa) fasta scores: E(): 9.8e-89, 64.67% id in 368 aa; hypothetical protein 4163802..4164911 Pectobacterium atrosepticum SCRI1043 2882338 YP_051812.1 CDS ECA3724 NC_004547.2 4164948 4165883 D Similar to Salmonella typhi hypothetical protein Sty1620 SWALL:Q8Z6U6 (EMBL:AL627270) (317 aa) fasta scores: E(): 1.3e-89, 75.07% id in 317 aa; hypothetical protein 4164948..4165883 Pectobacterium atrosepticum SCRI1043 2882339 YP_051813.1 CDS ECA3725 NC_004547.2 4165894 4166232 D Similar to Salmonella typhi membrane protein sty1621 SWALL:Q8Z6U5 (EMBL:AL627270) (112 aa) fasta scores: E(): 2.5e-24, 75% id in 112 aa; phage-related exported protein 4165894..4166232 Pectobacterium atrosepticum SCRI1043 2882340 YP_051814.1 CDS ECA3726 NC_004547.2 4166235 4166681 D Similar to Bacteriophage Mu protein Gp36 SWALL:VG36_BPMU (SWALL:Q9T1V9) (141 aa) fasta scores: E(): 0.0025, 26.02% id in 146 aa and to Salmonella typhi phage-related protein Sty1622 SWALL:Q8Z6U4 (EMBL:AL627270) (148 aa) fasta scores: E(): 4.4e-43, 75.67% id in 148 aa; phage-like protein 4166235..4166681 Pectobacterium atrosepticum SCRI1043 2885514 YP_051815.1 CDS ECA3727 NC_004547.2 4166681 4167148 D Similar to Salmonella typhi hypothetical protein Sty1623 SWALL:Q8Z6U3 (EMBL:AL627270) (154 aa) fasta scores: E(): 4.2e-46, 71.42% id in 154 aa, and to Salmonella typhimurium cytoplasmic protein stm4215 SWALL:Q8ZKJ0 (EMBL:AE008897) (151 aa) fasta scores: E(): 8e-13, 32.9% id in 155 aa; hypothetical protein 4166681..4167148 Pectobacterium atrosepticum SCRI1043 2885515 YP_051816.1 CDS ECA3728 NC_004547.2 4167145 4167369 D Similar to Salmonella typhi hypothetical protein Sty1624 SWALL:Q8Z6U2 (EMBL:AL627270) (84 aa) fasta scores: E(): 1.7e-13, 56.79% id in 81 aa, and to Salmonella typhimurium cytoplasmic protein stm4214 SWALL:Q8ZKJ1 (EMBL:AE008897) (65 aa) fasta scores: E(): 3.9e-09, 65.21% id in 46 aa; hypothetical protein 4167145..4167369 Pectobacterium atrosepticum SCRI1043 2885516 YP_051817.1 CDS ECA3729 NC_004547.2 4167359 4168786 D Similar to Bacteriophage P2 major tail sheath protein fI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 2.4e-19, 30.27% id in 403 aa and to Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 3.5e-154, 81.05% id in 475 aa; major tail sheath protein 4167359..4168786 Pectobacterium atrosepticum SCRI1043 2885517 YP_051818.1 CDS ECA3730 NC_004547.2 4168786 4169310 D Similar to Bacteriophage P2 major tail tube protein FII SWALL:VPF2_BPP2 (SWALL:P22502) (171 aa) fasta scores: E(): 4e-09, 28.65% id in 164 aa and to Erwinia carotovora tail core protein SWALL:Q9WXA0 (EMBL:AB017338) (174 aa) fasta scores: E(): 2.2e-60, 82.75% id in 174 aa; major tail sheath protein 4168786..4169310 Pectobacterium atrosepticum SCRI1043 2882710 YP_051819.1 CDS ECA3731 NC_004547.2 4169317 4169517 D Similar to Bacteriophage N15 gp56 gene 56 SWALL:O64364 (EMBL:AF064539) (67 aa) fasta scores: E(): 2.6e-10, 61.29% id in 62 aa; hypothetical protein 4169317..4169517 Pectobacterium atrosepticum SCRI1043 2882711 YP_051820.1 CDS ECA3731A NC_004547.2 4169658 4169960 D Similar to Salmonella typhi hypothetical protein t1360 SWALL:AAO69005 (EMBL:AE016838) (111 aa) fasta scores: E(): 1.7e-20, 62.5% id in 96 aa, and to Pectobacterium carotovorum subsp. carotovorum carotovorum orf1, orf2, orf4-12 genes, bacteriocin SWALL:Q9KW60 (EMBL:AB045036) (106 aa) fasta scores: E(): 4.7e-17, 53.12% id in 96 aa; phage-like protein 4169658..4169960 Pectobacterium atrosepticum SCRI1043 2882712 YP_051821.1 CDS ECA3732 NC_004547.2 4170347 4172818 D Similar to Salmonella typhi bacteriophage protein sty1629 SWALL:Q8Z6T7 (EMBL:AL627270) (821 aa) fasta scores: E(): 1.4e-195, 66.22% id in 823 aa, and to Pectobacterium carotovorum subsp. carotovorum tail protein SWALL:Q9KW59 (EMBL:AB045036) (835 aa) fasta scores: E(): 3.9e-67, 32.94% id in 853 aa; bacteriophage tail protein (tape-measure) 4170347..4172818 Pectobacterium atrosepticum SCRI1043 2882839 YP_051822.1 CDS ECA3733 NC_004547.2 4172818 4173702 D Similar to Pectobacterium carotovorum subsp. carotovorum carotovorum orf1, orf2, orf4-12 genes, bacteriocin SWALL:Q9KW58 (EMBL:AB045036) (309 aa) fasta scores: E(): 1.8e-50, 53.79% id in 303 aa, and to Salmonella typhi hypothetical protein Sty1630 SWALL:Q8Z6T6 (EMBL:AL627270) (294 aa) fasta scores: E(): 1.1e-68, 65.41% id in 292 aa; phage-like protein 4172818..4173702 Pectobacterium atrosepticum SCRI1043 2882840 YP_051823.1 CDS ECA3734 NC_004547.2 4173699 4173914 D Similar to Bacteriophage P2 tail protein x X SWALL:VPX_BPP2 (SWALL:P51772) (67 aa) fasta scores: E(): 2.1, 32.78% id in 61 aa and to Salmonella typhi bacteriophage tail fibre protein sty1631 SWALL:Q8Z6T5 (EMBL:AL627270) (71 aa) fasta scores: E(): 1.5e-19, 63.38% id in 71 aa; bacteriophage tail fiber protein 4173699..4173914 Pectobacterium atrosepticum SCRI1043 2882841 YP_051824.1 CDS ECA3735 NC_004547.2 4173902 4175047 D Similar to Bacteriophage P2 GpD SWALL:VPD_BPP2 (SWALL:P10312) (387 aa) fasta scores: E(): 7.1e-11, 24.45% id in 364 aa and to Salmonella typhi protein sty1632 SWALL:Q8Z6T4 (EMBL:AL627270) (384 aa) fasta scores: E(): 4.1e-106, 76.44% id in 382 aa; bacteriophage protein 4173902..4175047 Pectobacterium atrosepticum SCRI1043 2882842 YP_051825.1 CDS ECA3736 NC_004547.2 4175044 4175637 D Similar to Bacteriophage P2 baseplate assembly protein V SWALL:VPV_BPP2 (SWALL:P31340) (211 aa) fasta scores: E(): 3.6e-07, 28.27% id in 191 aa and Pectobacterium carotovorum subsp. carotovorum tail spike SWALL:Q9KW56 (EMBL:AB045036) (193 aa) fasta scores: E(): 5.4e-47, 64.46% id in 197 aa; bacteriophage baseplate protein 4175044..4175637 Pectobacterium atrosepticum SCRI1043 2885564 YP_051826.1 CDS ECA3737 NC_004547.2 4175664 4176512 D phage-like protein 4175664..4176512 Pectobacterium atrosepticum SCRI1043 2885565 YP_051827.1 CDS ECA3738 NC_004547.2 4176578 4176925 D Similar to Bacteriophage P2 baseplate assembly protein w W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 0.0098, 36.78% id in 87 aa and Erwinia carotovora, and Pectobacterium carotovorum subsp. carotovorum baseplate SWALL:Q9WXA2 (EMBL:AB017338) (115 aa) fasta scores: E(): 7.1e-37, 75.65% id in 115 aa; bacteriophage baseplate protein 4176578..4176925 Pectobacterium atrosepticum SCRI1043 2885566 YP_051828.1 CDS ECA3739 NC_004547.2 4176916 4178022 D Similar to Bacteriophage P2 baseplate assembly protein J SWALL:VPJ_BPP2 (SWALL:P51767) (302 aa) fasta scores: E(): 3.7e-13, 36.89% id in 187 aa and Pectobacterium carotovorum subsp. carotovorum baseplate SWALL:Q9KW55 (EMBL:AB045036) (367 aa) fasta scores: E(): 7.3e-87, 65.39% id in 367 aa; bacteriophage baseplate assembly protein 4176916..4178022 Pectobacterium atrosepticum SCRI1043 2881841 YP_051829.1 CDS ECA3740 NC_004547.2 4178015 4178590 D Similar to the N-terminus of Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 5.5, 29.29% id in 99 aa. Also hhighly similar to Erwinia carotovora tail fiber SWALL:Q9WXA4 (EMBL:AB017338) (182 aa) fasta scores: E(): 3.8e-31, 59.15% id in 142 aa; bacteriophage tail fiber protein 4178015..4178590 Pectobacterium atrosepticum SCRI1043 2881842 YP_051830.1 CDS ECA3741 NC_004547.2 4178591 4180153 D Similar to Pectobacterium carotovorum subsp. carotovorum tail fiber SWALL:Q9KW53 (EMBL:AB045036) (632 aa) fasta scores: E(): 4.4e-66, 75.76% id in 260 aa, and to Salmonella typhi bacteriophage tail fiber protein sty1637 SWALL:Q8Z6S9 (EMBL:AL627270) (341 aa) fasta scores: E(): 2.1e-29, 35.8% id in 539 aa, and to Bacteriophage HK97 tail fiber stF SWALL:Q9MCR6 (EMBL:AF069529) (321 aa) fasta scores: E(): 3.1e-27, 39.74% id in 317 aa; bacteriophage tail fiber protein 4178591..4180153 Pectobacterium atrosepticum SCRI1043 2881843 YP_051831.1 CDS ECA3742 NC_004547.2 4180153 4180770 D Similar to Salmonella typhi bacteriophage tail fiber assembly protein sty1639 SWALL:Q8Z6S7 (EMBL:AL627270) (205 aa) fasta scores: E(): 1.1e-18, 38.57% id in 197 aa, and to Bacteriophage HK97 gp29 tfA SWALL:Q9MCR5 (EMBL:AF069529) (202 aa) fasta scores: E(): 8.2e-20, 38.88% id in 198 aa; bacteriophage tail fiber assembly protein 4180153..4180770 Pectobacterium atrosepticum SCRI1043 2881358 YP_051832.1 CDS ECA3743 NC_004547.2 4180822 4181157 R Similar to Bacillus halodurans hypothetical protein Bh1582 bh1582 SWALL:Q9KCI9 (EMBL:AP001512) (143 aa) fasta scores: E(): 7.2e-05, 32.97% id in 94 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob0311 SWALL:BAC12267 (EMBL:AP004594) (140 aa) fasta scores: E(): 0.00065, 27.95% id in 93 aa; hypothetical protein complement(4180822..4181157) Pectobacterium atrosepticum SCRI1043 2881359 YP_051833.1 CDS ECA3744 NC_004547.2 4181249 4182667 D Similar to Escherichia coli O157:H7 z3973 protein z3973 or ecs3534 SWALL:Q8X922 (EMBL:AE005496) (444 aa) fasta scores: E(): 1.8e-78, 47.91% id in 455 aa, and to Salmonella typhimurium regulatory protein, GntR family stm2803 SWALL:Q8ZML3 (EMBL:AE008828) (444 aa) fasta scores: E(): 5.4e-76, 47.91% id in 455 aa; GntR family transcriptional regulator 4181249..4182667 Pectobacterium atrosepticum SCRI1043 2881360 YP_051834.1 CDS ECA3745 NC_004547.2 4182708 4183757 R Similar to Agrobacterium tumefaciens transcriptional regulator, LacI family PurR or atu4556 or agr_l_625 SWALL:Q8U798 (EMBL:AE009383) (353 aa) fasta scores: E(): 2.3e-43, 39.23% id in 339 aa, and to Sphingomonas sp transcriptional regulator CcpA SWALL:Q9KWU0 (EMBL:AB011415) (353 aa) fasta scores: E(): 5.6e-26, 32.75% id in 345 aa; LacI family transcriptional regulator complement(4182708..4183757) Pectobacterium atrosepticum SCRI1043 2881361 YP_051835.1 CDS ECA3746 NC_004547.2 4183757 4184809 R Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4557 or agr_l_624 SWALL:Q8U797 (EMBL:AE009383) (349 aa) fasta scores: E(): 2.9e-96, 69.42% id in 350 aa, and to Thermoanaerobacter tengcongensis sugar permeases malg4 or tte1936 SWALL:Q8R8Q9 (EMBL:AE013144) (275 aa) fasta scores: E(): 1.5e-45, 39.93% id in 328 aa; ABC transporter permease complement(4183757..4184809) Pectobacterium atrosepticum SCRI1043 2882322 YP_051836.1 CDS ECA3747 NC_004547.2 4184818 4185816 R Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4558 or agr_l_623 SWALL:Q8U796 (EMBL:AE009384) (352 aa) fasta scores: E(): 6.2e-82, 63.09% id in 317 aa, and to Thermoanaerobacter tengcongensis ABC-type sugar transport systems, permease components malf4 or tte1937 SWALL:Q8R8Q8 (EMBL:AE013144) (294 aa) fasta scores: E(): 5e-30, 37.62% id in 295 aa; ABC transporter permease complement(4184818..4185816) Pectobacterium atrosepticum SCRI1043 2882323 YP_051837.1 CDS ECA3748 NC_004547.2 4185840 4186931 R Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu4559 or agr_l_621 SWALL:Q8U795 (EMBL:AE009384) (368 aa) fasta scores: E(): 1e-75, 60.05% id in 363 aa, and to Rhizobium meliloti ATP-binding ABC transporter protein r00112 or smc04140 SWALL:Q92T68 (EMBL:AL591782) (360 aa) fasta scores: E(): 1.3e-69, 59.15% id in 355 aa; ABC transporter ATP-binding protein complement(4185840..4186931) Pectobacterium atrosepticum SCRI1043 2882324 YP_051838.1 CDS ECA3749 NC_004547.2 4186934 4188040 R Similar to Erwinia chrysanthemi RhiN protein RhiN SWALL:CAC83616 (EMBL:AJ292045) (379 aa) fasta scores: E(): 1.8e-53, 45.01% id in 311 aa, and to Agrobacterium tumefaciens hypothetical protein atu4561 atu4561 or agr_l_618 SWALL:Q8U793 (EMBL:AE009384) (397 aa) fasta scores: E(): 4.9e-74, 53.46% id in 361 aa. Also similar to ECA3559 (RhiN) (43.810% id. in 315 aa overlap); plant-inducible protein complement(4186934..4188040) Pectobacterium atrosepticum SCRI1043 2885372 YP_051839.1 CDS ECA3750 NC_004547.2 4188042 4190504 R Similar to Agrobacterium tumefaciens hypothetical protein atu4562 or agr_l_617 SWALL:Q8U792 (EMBL:AE009384) (840 aa) fasta scores: E(): 4e-114, 38.74% id in 826 aa; hypothetical protein complement(4188042..4190504) Pectobacterium atrosepticum SCRI1043 2885373 YP_051840.1 CDS ECA3751 NC_004547.2 4190949 4192256 D Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu4564 or agr_l_615 SWALL:Q8U790 (EMBL:AE009384) (428 aa) fasta scores: E(): 2.3e-71, 45.07% id in 426 aa, and to Thermoanaerobacter tengcongensis sugar-binding periplasmic proteins/domains ugpb4 or tte1938 SWALL:Q8R8Q7 (EMBL:AE013144) (438 aa) fasta scores: E(): 7.8e-17, 24.81% id in 403 aa; extracellular solute-binding protein 4190949..4192256 Pectobacterium atrosepticum SCRI1043 2885374 YP_051841.1 CDS ECA3752 NC_004547.2 4192253 4192804 D Similar to the C-terminal regions of several including Vibrio cholerae hypothetical protein Vc0614 vc0614 SWALL:Q9KUA9 (EMBL:AE004147) (325 aa) fasta scores: E(): 8.8e-12, 31.97% id in 147 aa, and to Vibrio vulnificus predicted N-acetylglucosamine kinase vv11667 SWALL:AAO10084 (EMBL:AE016802) (296 aa) fasta scores: E(): 9.7e-09, 27.66% id in 141 aa; hypothetical protein 4192253..4192804 Pectobacterium atrosepticum SCRI1043 2885375 YP_051842.1 CDS ECA3753 NC_004547.2 4192801 4193715 D Similar to Vibrio cholerae hypothetical protein Vc0614 SWALL:Q9KUA9 (EMBL:AE004147) (325 aa) fasta scores: E(): 2.6e-27, 40.66% id in 300 aa, and to Vibrio vulnificus predicted N-acetylglucosamine kinase vv11667 SWALL:AAO10084 (EMBL:AE016802) (296 aa) fasta scores: E(): 7.6e-29, 40.66% id in 300 aa; hypothetical protein 4192801..4193715 Pectobacterium atrosepticum SCRI1043 2885747 YP_051843.1 CDS ECA3754 NC_004547.2 4193741 4195564 D Similar to Rhizobium meliloti hypothetical protein rb0152 rb0152 or smb20152 SWALL:Q92X10 (EMBL:AL603642) (572 aa) fasta scores: E(): 9.3e-70, 36.77% id in 552 aa, and to Agrobacterium tumefaciens hypothetical protein atu4354 atu4354 or agr_l_1025 SWALL:Q8U7U5 (EMBL:AE009364) (557 aa) fasta scores: E(): 1.9e-63, 36.85% id in 521 aa; calcineurin-like phosphoesterase 4193741..4195564 Pectobacterium atrosepticum SCRI1043 2885748 YP_051844.1 CDS ECA3755 NC_004547.2 4195738 4196169 D hypothetical protein 4195738..4196169 Pectobacterium atrosepticum SCRI1043 2885749 YP_051845.1 CDS ECA3756 NC_004547.2 4196148 4196876 D Similar to Escherichia coli ABC transporter ATP-binding protein SWALL:CAD33755 (EMBL:AJ488511) (244 aa) fasta scores: E(): 1.5e-51, 65.65% id in 230 aa, and to Rhizobium loti ABC transporter, ATP-binding protein mll8315 SWALL:Q983I5 (EMBL:AP003013) (272 aa) fasta scores: E(): 8.5e-29, 45.87% id in 218 aa; ABC transporter ATP-binding protein 4196148..4196876 Pectobacterium atrosepticum SCRI1043 2881404 YP_051846.1 CDS ECA3757 NC_004547.2 4196873 4197727 D Similar to Escherichia coli ABC transporter membrane protein SWALL:CAD33756 (EMBL:AJ488511) (284 aa) fasta scores: E(): 2e-79, 80.35% id in 280 aa, and to Neisseria meningitidis ABC-transporter membrane protein nma0790 SWALL:Q9JVL3 (EMBL:AL162754) (291 aa) fasta scores: E(): 2.8e-54, 57.14% id in 280 aa; ABC transporter membrane protein 4196873..4197727 Pectobacterium atrosepticum SCRI1043 2881405 YP_051847.1 CDS ECA3758 NC_004547.2 4197767 4198645 D Similar to Escherichia coli periplasmic solute binding protein SWALL:CAD33757 (EMBL:AJ488511) (292 aa) fasta scores: E(): 1.2e-83, 78.42% id in 292 aa, and to Bradyrhizobium japonicum ABC transporter substrate-binding protein bll7769 SWALL:BAC53034 (EMBL:AP005963) (290 aa) fasta scores: E(): 1.7e-49, 48.09% id in 289 aa; ABC transporter substrate-binding protein 4197767..4198645 Pectobacterium atrosepticum SCRI1043 2881406 YP_051848.1 CDS ECA3759 NC_004547.2 4198710 4199525 R Similar to Salmonella typhimurium, and Salmonella typhi transcriptional regulator stm0164 or sty0186 SWALL:Q8XG73 (EMBL:AE008701) (255 aa) fasta scores: E(): 6.1e-68, 72.61% id in 252 aa, and to Escherichia coli O6 transcriptional regulator c0765 SWALL:AAN79238 (EMBL:AE016757) (253 aa) fasta scores: E(): 4.6e-67, 73.96% id in 242 aa; DeoR family transcriptional regulator complement(4198710..4199525) Pectobacterium atrosepticum SCRI1043 2885640 YP_051849.1 CDS pdxA NC_004547.2 4199670 4200650 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(4199670..4200650) Pectobacterium atrosepticum SCRI1043 2885641 YP_051850.1 CDS ECA3761 NC_004547.2 4200643 4201971 R Similar to Salmonella typhi hypothetical protein ygbk or sty0184 SWALL:Q8Z9E4 (EMBL:AL627265) (423 aa) fasta scores: E(): 3e-41, 43.59% id in 429 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1012 SWALL:BAC12968 (EMBL:AP004596) (431 aa) fasta scores: E(): 6.7e-31, 30.64% id in 434 aa; hypothetical protein complement(4200643..4201971) Pectobacterium atrosepticum SCRI1043 2885642 YP_051851.1 CDS ECA3762 NC_004547.2 4202207 4203343 D Similar to Escherichia coli O6 alcohol dehydrogenase c0762 SWALL:Q8FJW8 (EMBL:AE016757) (385 aa) fasta scores: E(): 1.1e-83, 61.96% id in 376 aa, and to Agrobacterium tumefaciens AttL SWALL:Q8VPD6 (EMBL:AY052389) (399 aa) fasta scores: E(): 4.6e-36, 35.84% id in 371 aa; alcohol dehydrogenase 4202207..4203343 Pectobacterium atrosepticum SCRI1043 2885643 YP_051852.1 CDS ECA3763 NC_004547.2 4203411 4204295 D Similar to Bacillus subtilis dihydrodipicolinate synthase DapA SWALL:DAPA_BACSU (SWALL:Q04796) (290 aa) fasta scores: E(): 2.9e-26, 34.16% id in 281 aa, and to Escherichia coli O6 dihydrodipicolinate synthase c0761 SWALL:AAN79234 (EMBL:AE016757) (295 aa) fasta scores: E(): 1.9e-75, 67.91% id in 293 aa; dihydrodipicolinate synthase 4203411..4204295 Pectobacterium atrosepticum SCRI1043 2885622 YP_051853.1 CDS ECA3764 NC_004547.2 4204334 4205749 D Similar to Pseudomonas aeruginosa probable sodium:solute symporter pa0287 SWALL:Q9I6K3 (EMBL:AE004466) (461 aa) fasta scores: E(): 4.1e-21, 23.02% id in 456 aa, and to Vibrio vulnificus na+/proline symporter vv20592 SWALL:AAO07538 (EMBL:AE016810) (492 aa) fasta scores: E(): 8.5e-19, 25.05% id in 455 aa; sodium:solute symporter 4204334..4205749 Pectobacterium atrosepticum SCRI1043 2885623 YP_051854.1 CDS ECA3765 NC_004547.2 4205753 4206940 D Similar to Escherichia coli O6 hypothetical protein c0759 SWALL:AAN79232 (EMBL:AE016757) (389 aa) fasta scores: E(): 1.2e-112, 70.18% id in 389 aa, and to Agrobacterium tumefaciens hypothetical protein atu5072 or agr_pat_102 SWALL:Q8UKM8 (EMBL:AE008932) (397 aa) fasta scores: E(): 2.4e-68, 47.13% id in 401 aa; hypothetical protein 4205753..4206940 Pectobacterium atrosepticum SCRI1043 2885624 YP_051855.1 CDS ECA3766 NC_004547.2 4207380 4207847 D Similar to Escherichia coli O6 hypothetical protein c0758 SWALL:AAN79231 (EMBL:AE016757) (156 aa) fasta scores: E(): 1.5e-22, 46.45% id in 155 aa, and to Salmonella typhi hypothetical protein Sty4806 SWALL:Q8Z124 (EMBL:AL627283) (150 aa) fasta scores: E(): 7.2e-13, 37.5% id in 152 aa; hypothetical protein 4207380..4207847 Pectobacterium atrosepticum SCRI1043 2885625 YP_051856.1 CDS ECA3767 NC_004547.2 4207998 4208687 D Similar to Pseudomonas aeruginosa probable short-chain dehydrogenase pa4162 SWALL:Q9HWL9 (EMBL:AE004832) (238 aa) fasta scores: E(): 8.7e-18, 39.58% id in 240 aa, and to Bradyrhizobium japonicum Blr3403 protein blr3403 SWALL:BAC48668 (EMBL:AP005947) (242 aa) fasta scores: E(): 4.5e-18, 35.19% id in 233 aa; short-chain dehydrogenase 4207998..4208687 Pectobacterium atrosepticum SCRI1043 2885626 YP_051857.1 CDS ECA3768 NC_004547.2 4209249 4211753 D Similar to Escherichia coli formate acetyltransferase 3 ybiw or b0823 SWALL:PFLF_ECOLI (SWALL:P75793) (810 aa) fasta scores: E(): 7.5e-46, 30.83% id in 814 aa, and to Escherichia coli hypothetical protein SWALL:CAD42073 (EMBL:AJ494981) (1140 aa) fasta scores: E(): 0, 86.97% id in 791 aa; formate acetyltransferase 4209249..4211753 Pectobacterium atrosepticum SCRI1043 2885627 YP_051858.1 CDS ECA3769 NC_004547.2 4211839 4212789 D Similar to Escherichia coli pyruvate formate-lyase 3 activating enzyme ybiy or b0824 SWALL:PFLE_ECOLI (SWALL:P75794) (308 aa) fasta scores: E(): 8.9e-28, 34.65% id in 303 aa, and to Escherichia coli hypothetical protein SWALL:CAD42072 (EMBL:AJ494981) (315 aa) fasta scores: E(): 2.3e-84, 69.62% id in 316 aa; pyruvate formate-lyase activating enzyme 4211839..4212789 Pectobacterium atrosepticum SCRI1043 2885628 YP_051859.1 CDS qacH NC_004547.2 4213115 4213531 D Similar to Escherichia coli quaternary ammonium compound resistance protein QacH SWALL:Q9F0S6 (EMBL:AF205943) (110 aa) fasta scores: E(): 3.8e-13, 41.28% id in 109 aa; quaternary ammonium compound resistance protein 4213115..4213531 Pectobacterium atrosepticum SCRI1043 2882685 YP_051860.1 CDS ECA3771 NC_004547.2 4213549 4213875 D Similar to Escherichia coli EmrE protein EmrE or MvrC or Eb or b0543 SWALL:EMRE_ECOLI (SWALL:P23895) (110 aa) fasta scores: E(): 3e-13, 37.5% id in 104 aa, and to Escherichia coli hypothetical protein SWALL:CAD42067 (EMBL:AJ494981) (109 aa) fasta scores: E(): 7.6e-33, 75.22% id in 109 aa; multidrug resistance protein 4213549..4213875 Pectobacterium atrosepticum SCRI1043 2884008 YP_051861.1 CDS ECA3772 NC_004547.2 4214035 4215231 R Similar to Yersinia pestis LacI-family transcriptional regulatory protein ypo2568 SWALL:Q8ZDJ4 (EMBL:AJ414152) (344 aa) fasta scores: E(): 4.7e-70, 54.46% id in 336 aa, and to Escherichia coli O6 conserved protein c0337 SWALL:AAN78825 (EMBL:AE016756) (343 aa) fasta scores: E(): 1.6e-67, 56.45% id in 310 aa; LacI family transcriptional regulator complement(4214035..4215231) Pectobacterium atrosepticum SCRI1043 2884009 YP_051862.1 CDS sgcA NC_004547.2 4215531 4215974 D Similar to Escherichia coli phosphotransferase enzyme iII, A component SgcA or b4302 SWALL:SGCA_ECOLI (SWALL:P39363) (143 aa) fasta scores: E(): 9.4e-18, 40% id in 135 aa, and to Yersinia pestis phosphotransferase enzyme ii, a component ypo2569 or y1618 SWALL:Q8ZDJ3 (EMBL:AJ414152) (147 aa) fasta scores: E(): 1.3e-39, 71.42% id in 147 aa; phosphotransferase enzyme II, A component 4215531..4215974 Pectobacterium atrosepticum SCRI1043 2884389 YP_051863.1 CDS ECA3774 NC_004547.2 4215997 4216284 D Similar to Escherichia coli O6 hypothetical protein c0335 SWALL:AAN78823 (EMBL:AE016756) (95 aa) fasta scores: E(): 3.1e-25, 84.21% id in 95 aa, and to Yersinia pestis hypothetical y1617 SWALL:AAM85186 (EMBL:AE013764) (70 aa) fasta scores: E(): 5.6e-15, 81.81% id in 66 aa; hypothetical protein 4215997..4216284 Pectobacterium atrosepticum SCRI1043 2884010 YP_051864.1 CDS ulaA NC_004547.2 4216300 4217559 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4216300..4217559 Pectobacterium atrosepticum SCRI1043 2885606 YP_051865.1 CDS fsaB NC_004547.2 4217612 4218277 D similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 4217612..4218277 Pectobacterium atrosepticum SCRI1043 2884526 YP_051866.1 CDS ECA3777 NC_004547.2 4218358 4218717 R Similar to Salmonella typhi hypothetical upf0231 protein yacl or sty0182 or t0165 SWALL:Q8Z9E5 (EMBL:AL627265) (120 aa) fasta scores: E(): 1.2e-33, 70.94% id in 117 aa, and to Escherichia coli O6 hypothetical upf0231 protein yacl or c0148 SWALL:AAN78642 (EMBL:AE016755) (136 aa) fasta scores: E(): 3.5e-32, 70.08% id in 117 aa; hypothetical protein complement(4218358..4218717) Pectobacterium atrosepticum SCRI1043 2885607 YP_051867.1 CDS acnB NC_004547.2 4218908 4221505 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(4218908..4221505) Pectobacterium atrosepticum SCRI1043 2884759 YP_051868.1 CDS ECA3779 NC_004547.2 4221890 4222456 D hypothetical protein 4221890..4222456 Pectobacterium atrosepticum SCRI1043 2885608 YP_051869.1 CDS ECA3780 NC_004547.2 4222572 4222883 D Similar to Pseudomonas aeruginosa transcriptional activator SWALL:AAN62123 (EMBL:AF440523) (103 aa) fasta scores: E(): 2.7e-30, 74.75% id in 103 aa, and to Salmonella typhimurium regulatory protein, ArsR family stm2797 SWALL:Q8ZML8 (EMBL:AE008827) (99 aa) fasta scores: E(): 7.5e-15, 51.57% id in 95 aa; transcriptional regulator ArsR 4222572..4222883 Pectobacterium atrosepticum SCRI1043 2885618 YP_051870.1 CDS fepA NC_004547.2 4223014 4225257 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(4223014..4225257) Pectobacterium atrosepticum SCRI1043 2882723 YP_051871.1 CDS ECA3782 NC_004547.2 4225443 4225724 D hypothetical protein 4225443..4225724 Pectobacterium atrosepticum SCRI1043 2885619 YP_051872.1 CDS ECA3783 NC_004547.2 4225741 4226724 D Similar to Salmonella typhi AraC-family transcriptional regulator sty0395 SWALL:Q8Z909 (EMBL:AL627266) (334 aa) fasta scores: E(): 7.3e-15, 27.68% id in 307 aa, and to Brucella suis transcriptional regulator, AraC family bra1192 SWALL:AAN34350 (EMBL:AE014611) (259 aa) fasta scores: E(): 6.2e-14, 26.33% id in 243 aa; AraC family transcriptional regulator 4225741..4226724 Pectobacterium atrosepticum SCRI1043 2885620 YP_051873.1 CDS ECA3784 NC_004547.2 4226833 4228161 D Similar to Agrobacterium tumefaciens hypothetical protein atu3361 or agr_l_2924 SWALL:Q8UAL2 (EMBL:AE009266) (448 aa) fasta scores: E(): 5.1e-53, 42.42% id in 462 aa, and to Bacillus subtilis hypothetical protein yxeq or lp9I SWALL:YXEQ_BACSU (SWALL:P54956) (445 aa) fasta scores: E(): 3.3e-43, 40.5% id in 400 aa; hypothetical protein 4226833..4228161 Pectobacterium atrosepticum SCRI1043 2885621 YP_051874.1 CDS ECA3785 NC_004547.2 4228174 4229361 R Similar to Yersinia pestis hypothetical y0507 SWALL:AAM84096 (EMBL:AE013652) (330 aa) fasta scores: E(): 1.1e-96, 71.96% id in 321 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob2095 SWALL:BAC14051 (EMBL:AP004600) (335 aa) fasta scores: E(): 1.8e-11, 26.58% id in 316 aa; hypothetical protein complement(4228174..4229361) Pectobacterium atrosepticum SCRI1043 2885615 YP_051875.1 CDS ECA3786 NC_004547.2 4229494 4230162 R Similar to Yersinia pestis hypothetical protein Ypo3693 SWALL:Q8ZAU3 (EMBL:AJ414158) (212 aa) fasta scores: E(): 4.7e-23, 35.84% id in 212 aa; hypothetical protein complement(4229494..4230162) Pectobacterium atrosepticum SCRI1043 2885616 YP_051876.1 CDS lpdA NC_004547.2 4230366 4231793 R E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(4230366..4231793) Pectobacterium atrosepticum SCRI1043 2882939 YP_051877.1 CDS aceF NC_004547.2 4232027 4233904 R E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase complement(4232027..4233904) Pectobacterium atrosepticum SCRI1043 2884502 YP_051878.1 CDS aceE NC_004547.2 4233919 4236582 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(4233919..4236582) Pectobacterium atrosepticum SCRI1043 2884501 YP_051879.1 CDS pdhR NC_004547.2 4236725 4237489 R activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR complement(4236725..4237489) Pectobacterium atrosepticum SCRI1043 2882092 YP_051880.1 CDS aroP NC_004547.2 4238161 4239519 D Similar to Escherichia coli aromatic amino acid transport protein AroP or b0112 SWALL:AROP_ECOLI (SWALL:P15993) (457 aa) fasta scores: E(): 5.2e-136, 76.78% id in 448 aa; aromatic amino acid transport protein 4238161..4239519 Pectobacterium atrosepticum SCRI1043 2884128 YP_051881.1 CDS ECA3792 NC_004547.2 4239710 4241143 D Similar to Salmonella typhimurium hypothetical 52.4 kDa protein stm0149 SWALL:Q9L4I1 (EMBL:AJ242516) (468 aa) fasta scores: E(): 4.5e-155, 79.78% id in 455 aa, and to Escherichia coli hypothetical symporter yicj or b3657 SWALL:YICJ_ECOLI (SWALL:P31435) (460 aa) fasta scores: E(): 2.9e-87, 46.22% id in 450 aa; hypothetical protein 4239710..4241143 Pectobacterium atrosepticum SCRI1043 2885617 YP_051882.1 CDS ECA3793 NC_004547.2 4241118 4242077 D Similar to Streptomyces chartreusis alpha-L-arabinofuranosidase II precursor SWALL:ABF2_STRCX (SWALL:P82594) (328 aa) fasta scores: E(): 1e-65, 54.19% id in 286 aa, and to Salmonella typhi putatuve glycosysl hydrolase sty0170 SWALL:Q8Z9F3 (EMBL:AL627265) (316 aa) fasta scores: E(): 2.9e-102, 74.76% id in 313 aa; glycosyl hydrolase 4241118..4242077 Pectobacterium atrosepticum SCRI1043 2881797 YP_051883.1 CDS ampE NC_004547.2 4242114 4242968 R involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE complement(4242114..4242968) Pectobacterium atrosepticum SCRI1043 2884181 YP_051884.1 CDS ampD NC_004547.2 4242965 4243540 R Similar to Escherichia coli ampd protein AmpD or b0110 SWALL:AMPD_ECOLI (SWALL:P13016) (183 aa) fasta scores: E(): 1.2e-51, 67.21% id in 183 aa, and to Enterobacter cloacae AmpD protein AmpD SWALL:AMPD_ENTCL (SWALL:P82973) (187 aa) fasta scores: E(): 5.9e-53, 69.1% id in 178 aa; N-acetyl-anhydromuranmyl-L-alanine amidase complement(4242965..4243540) Pectobacterium atrosepticum SCRI1043 2884180 YP_051885.1 CDS tsx NC_004547.2 4243947 4244819 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri nucleoside-specific channel-forming protein Tsx precursor Tsx or NupA or b0411 or z0512 or ecs0464 or sf0348 SWALL:TSX_ECOLI (SWALL:P22786) (294 aa) fasta scores: E(): 3.1e-92, 73.46% id in 294 aa; nucleoside-specific channel-forming protein 4243947..4244819 Pectobacterium atrosepticum SCRI1043 2884231 YP_051886.1 CDS nadC NC_004547.2 4244964 4245854 D catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase 4244964..4245854 Pectobacterium atrosepticum SCRI1043 2885134 YP_051887.1 CDS ppdD NC_004547.2 4246180 4246626 D Similar to Escherichia coli prepilin peptidase dependent protein D precursor PpdD or b0108 SWALL:PPDD_ECOLI (SWALL:P36647) (146 aa) fasta scores: E(): 2.8e-32, 60.69% id in 145 aa; major pilin subunit 4246180..4246626 Pectobacterium atrosepticum SCRI1043 2882896 YP_051888.1 CDS hofB NC_004547.2 4246629 4248101 D Similar to Escherichia coli protein transport protein HofB or HopB or b0107 SWALL:HOFB_ECOLI (SWALL:P36645) (461 aa) fasta scores: E(): 3.2e-77, 51.06% id in 470 aa; hypothetical protein 4246629..4248101 Pectobacterium atrosepticum SCRI1043 2882039 YP_051889.1 CDS hofC NC_004547.2 4248098 4249303 D Similar to Escherichia coli protein transport protein HofC or HopC or b0106 SWALL:HOFC_ECOLI (SWALL:P36646) (400 aa) fasta scores: E(): 5.6e-55, 40.15% id in 401 aa; type IV pilin biogenesis protein 4248098..4249303 Pectobacterium atrosepticum SCRI1043 2882040 YP_051890.1 CDS guaC NC_004547.2 4249388 4250428 R catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase complement(4249388..4250428) Pectobacterium atrosepticum SCRI1043 2883708 YP_051891.1 CDS coaE NC_004547.2 4250722 4251348 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 4250722..4251348 Pectobacterium atrosepticum SCRI1043 2884952 YP_051892.1 CDS ECA3803 NC_004547.2 4251341 4252093 D Similar to Yersinia pestis hypothetical protein ypo3431 or y0756 SWALL:AAM84343 (EMBL:AJ414157) (250 aa) fasta scores: E(): 1.2e-65, 69.2% id in 250 aa, and to Escherichia coli O6 hypothetical protein yacf or c0122 SWALL:AAN78620 (EMBL:AE016755) (247 aa) fasta scores: E(): 1.7e-63, 67.34% id in 245 aa; hypothetical protein 4251341..4252093 Pectobacterium atrosepticum SCRI1043 2881798 YP_051893.1 CDS ECA3804 NC_004547.2 4252166 4252360 D Similar to Yersinia pestis hypothetical protein ypo3432 or y0755 SWALL:Q8ZBH8 (EMBL:AJ414157) (68 aa) fasta scores: E(): 2.6e-16, 66.12% id in 62 aa, and to Escherichia coli O6 hypothetical protein yacg or c0121 SWALL:AAN78619 (EMBL:AE016755) (65 aa) fasta scores: E(): 2e-15, 65% id in 60 aa; hypothetical protein 4252166..4252360 Pectobacterium atrosepticum SCRI1043 2881799 YP_051894.1 CDS mutT NC_004547.2 4252404 4252799 R Similar to Escherichia coli mutator MutT protein MutT or b0099 SWALL:MUTT_ECOLI (SWALL:P08337) (129 aa) fasta scores: E(): 6.2e-23, 55.72% id in 131 aa; nucleoside triphosphate pyrophosphohydrolase complement(4252404..4252799) Pectobacterium atrosepticum SCRI1043 2885294 YP_051895.1 CDS secA NC_004547.2 4252890 4255592 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(4252890..4255592) Pectobacterium atrosepticum SCRI1043 2884411 YP_051896.1 CDS secM NC_004547.2 4255704 4256219 R secM translational pause allows for the initiation of secA translation; SecA regulator SecM complement(4255704..4256219) Pectobacterium atrosepticum SCRI1043 2884405 YP_051897.1 CDS ECA3808 NC_004547.2 4256247 4256774 D Similar to Yersinia pestis hypothetical protein ypo0562 or y3619 SWALL:Q8ZIE2 (EMBL:AJ414143) (176 aa) fasta scores: E(): 4.8e-42, 67.81% id in 174 aa, and to Vibrio cholerae hypothetical protein Vc2395 SWALL:Q9KPH3 (EMBL:AE004310) (157 aa) fasta scores: E(): 3.3e-11, 33.74% id in 163 aa; hypothetical protein 4256247..4256774 Pectobacterium atrosepticum SCRI1043 2881800 YP_051898.1 CDS lpxC NC_004547.2 4256787 4257707 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(4256787..4257707) Pectobacterium atrosepticum SCRI1043 2882789 YP_051899.1 CDS ftsZ NC_004547.2 4257809 4258960 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(4257809..4258960) Pectobacterium atrosepticum SCRI1043 2883481 YP_051900.1 CDS ftsA NC_004547.2 4259029 4260285 R ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA complement(4259029..4260285) Pectobacterium atrosepticum SCRI1043 2884056 YP_051901.1 CDS ftsQ NC_004547.2 4260282 4261166 R involved in septum formation; cell division protein FtsQ complement(4260282..4261166) Pectobacterium atrosepticum SCRI1043 2883558 YP_051902.1 CDS ddl NC_004547.2 4261168 4262088 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(4261168..4262088) Pectobacterium atrosepticum SCRI1043 2884756 YP_051903.1 CDS murC NC_004547.2 4262097 4263557 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(4262097..4263557) Pectobacterium atrosepticum SCRI1043 2881742 YP_051904.1 CDS murG NC_004547.2 4263620 4264711 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(4263620..4264711) Pectobacterium atrosepticum SCRI1043 2881728 YP_051905.1 CDS ftsW NC_004547.2 4264708 4265910 R integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW complement(4264708..4265910) Pectobacterium atrosepticum SCRI1043 2883559 YP_051906.1 CDS murD NC_004547.2 4265910 4267226 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(4265910..4267226) Pectobacterium atrosepticum SCRI1043 2881743 YP_051907.1 CDS mraY NC_004547.2 4267230 4268312 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(4267230..4268312) Pectobacterium atrosepticum SCRI1043 2881747 YP_051908.1 CDS murF NC_004547.2 4268306 4269667 R Similar to Escherichia coli UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF or Mra or b0086 SWALL:MURF_ECOLI (SWALL:P11880) (452 aa) fasta scores: E(): 1.5e-118, 71.3% id in 453 aa; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(4268306..4269667) Pectobacterium atrosepticum SCRI1043 2881727 YP_051909.1 CDS murE NC_004547.2 4269664 4271151 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(4269664..4271151) Pectobacterium atrosepticum SCRI1043 2881726 YP_051910.1 CDS ftsI NC_004547.2 4271138 4272901 R Similar to Escherichia coli, and Escherichia coli O157:H7 peptidoglycan synthetase FtsI precursor FtsI or PbpB or b0084 or z0094 or ecs0088 SWALL:FTSI_ECOLI (SWALL:P04286) (588 aa) fasta scores: E(): 1.7e-197, 86.22% id in 588 aa; peptidoglycan synthetase complement(4271138..4272901) Pectobacterium atrosepticum SCRI1043 2884013 YP_051911.1 CDS ftsL NC_004547.2 4272925 4273245 R membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL complement(4272925..4273245) Pectobacterium atrosepticum SCRI1043 2883714 YP_051912.1 CDS mraW NC_004547.2 4273242 4274186 R Similar to Escherichia coli, and Escherichia coli O157:H7 D-adenosyl-methyltransferase MraW mraw or b0082 or z0092 or ecs0086 SWALL:MRAW_ECOLI (SWALL:P18595) (313 aa) fasta scores: E(): 6.8e-94, 79.93% id in 314 aa; S-adenosyl-methyltransferase MraW complement(4273242..4274186) Pectobacterium atrosepticum SCRI1043 2881698 YP_051913.1 CDS mraZ NC_004547.2 4274189 4274647 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(4274189..4274647) Pectobacterium atrosepticum SCRI1043 2881748 YP_051914.1 CDS ECA3826 NC_004547.2 4275465 4275902 D Similar to Yersinia pestis membrane protein ypo0544 SWALL:Q8ZIF9 (EMBL:AJ414143) (148 aa) fasta scores: E(): 5.1e-40, 72.02% id in 143 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ygaw or b2670 or c3221 or z3970 or ecs3531 or sf2698 SWALL:YGAW_ECOLI (SWALL:P76626) (149 aa) fasta scores: E(): 9.4e-34, 61.53% id in 143 aa; hypothetical protein 4275465..4275902 Pectobacterium atrosepticum SCRI1043 2885771 YP_051915.1 CDS ECA3827 NC_004547.2 4275970 4276974 R binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR complement(4275970..4276974) Pectobacterium atrosepticum SCRI1043 2885772 YP_051916.1 CDS ilvH NC_004547.2 4277370 4277861 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(4277370..4277861) Pectobacterium atrosepticum SCRI1043 2882125 YP_051917.1 CDS ilvI NC_004547.2 4277864 4279582 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit complement(4277864..4279582) Pectobacterium atrosepticum SCRI1043 2882126 YP_051918.1 CDS ECA3830 NC_004547.2 4279945 4281750 R Similar to Yersinia pestis AMP-binding enzyme-family protein ypo0537 or y3641 SWALL:Q8ZIG5 (EMBL:AJ414143) (601 aa) fasta scores: E(): 1.8e-160, 66.61% id in 599 aa, and to Vibrio vulnificus long-chain acyl-coa synthetase vv10649 SWALL:AAO09161 (EMBL:AE016799) (601 aa) fasta scores: E(): 1.8e-133, 55.31% id in 593 aa; AMP-binding protein complement(4279945..4281750) Pectobacterium atrosepticum SCRI1043 2885773 YP_051919.1 CDS leuA NC_004547.2 4282166 4283764 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 4282166..4283764 Pectobacterium atrosepticum SCRI1043 2883504 YP_051920.1 CDS leuB NC_004547.2 4283764 4284855 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 4283764..4284855 Pectobacterium atrosepticum SCRI1043 2883505 YP_051921.1 CDS leuC NC_004547.2 4284858 4286258 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 4284858..4286258 Pectobacterium atrosepticum SCRI1043 2883432 YP_051922.1 CDS leuD NC_004547.2 4286272 4286874 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 4286272..4286874 Pectobacterium atrosepticum SCRI1043 2883433 YP_051923.1 CDS ECA3835 NC_004547.2 4286955 4287266 R Similar to Pseudomonas putida conserved hypothetical protein pp2384 SWALL:AAN67997 (EMBL:AE016783) (104 aa) fasta scores: E(): 8.6e-14, 40.77% id in 103 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2038 SWALL:Q9I277 (EMBL:AE004630) (104 aa) fasta scores: E(): 1.9e-13, 42.85% id in 98 aa; hypothetical protein complement(4286955..4287266) Pectobacterium atrosepticum SCRI1043 2885756 YP_051924.1 CDS ECA3836 NC_004547.2 4287263 4287997 R Similar to Pseudomonas putida branched-chain amino acid transport protein AzlC or pp2385 SWALL:AAN67998 (EMBL:AE016783) (230 aa) fasta scores: E(): 3e-36, 47.36% id in 209 aa, and to Vibrio cholerae AzlC family protein vca1002 SWALL:Q9KKU8 (EMBL:AE004427) (239 aa) fasta scores: E(): 1.2e-34, 44.79% id in 221 aa; hypothetical protein complement(4287263..4287997) Pectobacterium atrosepticum SCRI1043 2885757 YP_051925.1 CDS ECA3837 NC_004547.2 4288182 4289018 R Similar to Vibrio vulnificus AraC-type DNA-binding domain-containing protein vv20572 SWALL:AAO07518 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.1e-52, 48.36% id in 275 aa, and to Vibrio cholerae transcriptional regulator, AraC/XylS family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 3.6e-50, 50% id in 270 aa; AraC family transcriptional regulator complement(4288182..4289018) Pectobacterium atrosepticum SCRI1043 2885758 YP_051926.1 CDS ECA3838 NC_004547.2 4289237 4290856 R Similar to Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 3.7e-77, 49.51% id in 515 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor trg or stm1626 SWALL:Q8ZPA9 (EMBL:AE008771) (541 aa) fasta scores: E(): 4.2e-82, 52.97% id in 521 aa; methyl-accepting chemotaxis protein complement(4289237..4290856) Pectobacterium atrosepticum SCRI1043 2885676 YP_051927.1 CDS ECA3839 NC_004547.2 4290971 4291162 R Similar to Influenza A virus matrix protein 2 M SWALL:Q9Q0L9 (EMBL:AF144306) (97 aa) fasta scores: E(): 1.4, 45.45% id in 33 aa; matrix protein complement(4290971..4291162) Pectobacterium atrosepticum SCRI1043 2885677 YP_051928.1 CDS ECA3840 NC_004547.2 4291683 4292240 D Similar to Yersinia pestis hypothetical protein y5204 or y1108 or ypmt1.54 SWALL:O68768 (EMBL:AF053947) (187 aa) fasta scores: E(): 7.6e-34, 56.88% id in 167 aa; hypothetical protein 4291683..4292240 Pectobacterium atrosepticum SCRI1043 2885678 YP_051929.1 CDS ECA3841 NC_004547.2 4292628 4294286 D activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR 4292628..4294286 Pectobacterium atrosepticum SCRI1043 2885679 YP_051930.1 CDS ECA3842 NC_004547.2 4294345 4295274 R Similar to Cicer arietinum isoflavone reductase Ifr SWALL:IFR_CICAR (SWALL:Q00016) (318 aa) fasta scores: E(): 8.4e-10, 26.11% id in 291 aa, and to Salmonella typhi oxidoreductase sty1385 SWALL:Q8Z7A4 (EMBL:AL627270) (309 aa) fasta scores: E(): 3.6e-57, 54.88% id in 297 aa; isoflavone oxidoreductase complement(4294345..4295274) Pectobacterium atrosepticum SCRI1043 2885700 YP_051931.1 CDS ECA3843 NC_004547.2 4295557 4296462 D Similar to Burkholderia cepacia transcriptional regulator CeoR SWALL:Q8VL17 (EMBL:AY008288) (334 aa) fasta scores: E(): 1e-47, 45.27% id in 296 aa, and to Salmonella typhi transcriptional regulator sty1386 SWALL:Q8Z7A3 (EMBL:AL627270) (301 aa) fasta scores: E(): 1.3e-47, 45.36% id in 302 aa; LysR family transcriptional regulator 4295557..4296462 Pectobacterium atrosepticum SCRI1043 2885701 YP_051932.2 CDS tbpA NC_004547.2 4296786 4297769 D part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 4296786..4297769 Pectobacterium atrosepticum SCRI1043 2884312 YP_051933.1 CDS thiP NC_004547.2 4297745 4299352 D permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 4297745..4299352 Pectobacterium atrosepticum SCRI1043 2884289 YP_051934.2 CDS thiQ NC_004547.2 4299339 4300049 D with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit 4299339..4300049 Pectobacterium atrosepticum SCRI1043 2884290 YP_051935.1 CDS ECA3847 NC_004547.2 4300054 4301676 R Similar to Butyrivibrio fibrisolvens xylosidase/arabinosidase [includes: beta-xylosidase; alpha-L-arabinofuranosidase] xylB SWALL:XYLB_BUTFI (SWALL:P45982) (517 aa) fasta scores: E(): 4.4e-13, 25.19% id in 520 aa, and to Xanthomonas campestris xylosidase/arabinosidase xcc0149 SWALL:Q8PE34 (EMBL:AE012110) (526 aa) fasta scores: E(): 3.3e-128, 58.97% id in 507 aa; xylosidase/arabinosidase complement(4300054..4301676) Pectobacterium atrosepticum SCRI1043 2885702 YP_051936.1 CDS ilvB NC_004547.2 4302196 4303860 D catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase catalytic subunit 4302196..4303860 Pectobacterium atrosepticum SCRI1043 2882282 YP_051937.1 CDS ilvN NC_004547.2 4303866 4304159 D with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit 4303866..4304159 Pectobacterium atrosepticum SCRI1043 2881787 YP_051938.1 CDS ECA3850 NC_004547.2 4304195 4304965 R Similar to Yersinia pestis deda-family membrane protein ypo0519 or y3654 SWALL:Q8ZIH8 (EMBL:AJ414143) (255 aa) fasta scores: E(): 6.9e-66, 65.23% id in 256 aa, and to Escherichia coli O6 hypothetical protein yabi or c0081 SWALL:AAN78577 (EMBL:AE016755) (254 aa) fasta scores: E(): 5.8e-65, 66.53% id in 254 aa; hypothetical protein complement(4304195..4304965) Pectobacterium atrosepticum SCRI1043 2885278 YP_051939.1 CDS ECA3851 NC_004547.2 4305089 4306693 D Similar to Pseudomonas putida ggdef family protein pp2413 SWALL:AAN68025 (EMBL:AE016783) (544 aa) fasta scores: E(): 3.3e-96, 49.32% id in 515 aa, and to Ralstonia solanacearum probable transmembrane protein rsc1893 or rs03455 SWALL:Q8XY70 (EMBL:AL646067) (533 aa) fasta scores: E(): 8.9e-78, 44.14% id in 512 aa; hypothetical protein 4305089..4306693 Pectobacterium atrosepticum SCRI1043 2885279 YP_051940.1 CDS polB NC_004547.2 4306807 4309173 D Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 4306807..4309173 Pectobacterium atrosepticum SCRI1043 2883190 YP_051941.1 CDS hepA NC_004547.2 4309359 4312262 D transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 4309359..4312262 Pectobacterium atrosepticum SCRI1043 2882431 YP_051942.1 CDS rluA NC_004547.2 4312461 4313114 D Similar to Escherichia coli ribosomal large subunit pseudouridine synthase A RluA or b0058 SWALL:RLUA_ECOLI (SWALL:P39219) (218 aa) fasta scores: E(): 1.5e-68, 77.88% id in 217 aa; ribosomal large subunit pseudouridine synthase A 4312461..4313114 Pectobacterium atrosepticum SCRI1043 2885048 YP_051943.1 CDS djlA NC_004547.2 4313211 4314086 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(4313211..4314086) Pectobacterium atrosepticum SCRI1043 2883258 YP_051944.1 CDS imp NC_004547.2 4314274 4316637 D determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 4314274..4316637 Pectobacterium atrosepticum SCRI1043 2881756 YP_051945.1 CDS surA NC_004547.2 4316738 4318033 D Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA 4316738..4318033 Pectobacterium atrosepticum SCRI1043 2884327 YP_051946.1 CDS pdxA NC_004547.2 4318033 4319034 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 4318033..4319034 Pectobacterium atrosepticum SCRI1043 2882093 YP_051947.1 CDS ksgA NC_004547.2 4319027 4319845 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 4319027..4319845 Pectobacterium atrosepticum SCRI1043 2883738 YP_051948.1 CDS apaG NC_004547.2 4319858 4320235 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 4319858..4320235 Pectobacterium atrosepticum SCRI1043 2884174 YP_051949.1 CDS apaH NC_004547.2 4320238 4321083 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 4320238..4321083 Pectobacterium atrosepticum SCRI1043 2884175 YP_051950.1 CDS ECA3862 NC_004547.2 4321758 4322282 R Similar to Pseudomonas putida conserved hypothetical protein pp3609 SWALL:Q88GV8 (EMBL:AE016787) (176 aa) fasta scores: E(): 2.2e-29, 50.93% id in 161 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3320 SWALL:Q9HYS5 (EMBL:AE004754) (151 aa) fasta scores: E(): 1.7e-18, 46.37% id in 138 aa; hypothetical protein complement(4321758..4322282) Pectobacterium atrosepticum SCRI1043 2885280 YP_051951.1 CDS ECA3863 NC_004547.2 4322394 4323299 D Similar to Pseudomonas putida transcriptional regulator, LysR family pp3608 SWALL:AAN69208 (EMBL:AE016787) (309 aa) fasta scores: E(): 1.2e-68, 56.18% id in 299 aa, and to Pseudomonas glumae lys-r type regulatory protein toxR SWALL:Q8RS39 (EMBL:AB040403) (333 aa) fasta scores: E(): 9.1e-65, 55.1% id in 294 aa; LysR family transcriptional regulator 4322394..4323299 Pectobacterium atrosepticum SCRI1043 2885281 YP_051952.1 CDS folA NC_004547.2 4323391 4323873 R catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase complement(4323391..4323873) Pectobacterium atrosepticum SCRI1043 2885386 YP_051953.1 CDS ECA3865 NC_004547.2 4323972 4324442 R Similar to Yersinia pestis membrane protein ypo0485 SWALL:Q8ZIL1 (EMBL:AJ414143) (151 aa) fasta scores: E(): 1.8e-48, 85.06% id in 154 aa, and to Salmonella typhi membrane protein sty4898 SWALL:Q8Z0W0 (EMBL:AL627284) (157 aa) fasta scores: E(): 2.1e-43, 71.97% id in 157 aa; hypothetical protein complement(4323972..4324442) Pectobacterium atrosepticum SCRI1043 2885210 YP_051954.1 CDS ECA3866 NC_004547.2 4324433 4325254 R Similar to Yersinia pestis membrane protein ypo0484 or y3690 SWALL:Q8ZIL2 (EMBL:AJ414143) (266 aa) fasta scores: E(): 1.7e-82, 82.14% id in 252 aa, and to Salmonella typhi membrane protein sty4899 SWALL:Q8Z0V9 (EMBL:AL627284) (303 aa) fasta scores: E(): 1.1e-75, 70.49% id in 261 aa; hypothetical protein complement(4324433..4325254) Pectobacterium atrosepticum SCRI1043 2885211 YP_051955.1 CDS ECA3867 NC_004547.2 4325410 4326024 D Similar to Yersinia pestis lyse type translocator ypo0483 SWALL:Q8ZIL3 (EMBL:AJ414143) (204 aa) fasta scores: E(): 5.5e-66, 78.92% id in 204 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2710 pa2710 SWALL:Q9I0D2 (EMBL:AE004699) (204 aa) fasta scores: E(): 4.4e-59, 74.87% id in 203 aa; LysE-type translocator 4325410..4326024 Pectobacterium atrosepticum SCRI1043 2885212 YP_051956.1 CDS ECA3868 NC_004547.2 4326126 4326494 R Similar to Rhizobium loti hypothetical protein Mll3207 SWALL:Q98GR5 (EMBL:AP003001) (131 aa) fasta scores: E(): 5.1e-21, 47.1% id in 121 aa, and to Pantoea agglomerans EhpR SWALL:AAN40889 (EMBL:AF451953) (129 aa) fasta scores: E(): 1.2e-05, 32.2% id in 118 aa; hypothetical protein complement(4326126..4326494) Pectobacterium atrosepticum SCRI1043 2885195 YP_051957.1 CDS ECA3869 NC_004547.2 4326592 4327281 R Similar to Rhizobium meliloti transcription regulator protein r00227 or smc02902 SWALL:Q92SX3 (EMBL:AL591782) (230 aa) fasta scores: E(): 1.8e-52, 60.61% id in 226 aa, and to Xanthomonas axonopodis transcriptional regulator xac1298 SWALL:Q8PMX7 (EMBL:AE011760) (231 aa) fasta scores: E(): 3e-38, 50% id in 218 aa; transcriptional regulator complement(4326592..4327281) Pectobacterium atrosepticum SCRI1043 2885196 YP_051958.1 CDS carB NC_004547.2 4327460 4330684 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(4327460..4330684) Pectobacterium atrosepticum SCRI1043 2882113 YP_051959.1 CDS carA NC_004547.2 4330699 4331847 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(4330699..4331847) Pectobacterium atrosepticum SCRI1043 2882112 YP_051960.1 CDS ECA3872 NC_004547.2 4332293 4333114 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(4332293..4333114) Pectobacterium atrosepticum SCRI1043 2885197 YP_051961.1 CDS ispH NC_004547.2 4333452 4334402 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(4333452..4334402) Pectobacterium atrosepticum SCRI1043 2881577 YP_051962.1 CDS fkpB NC_004547.2 4334383 4334856 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri FkbP-type 16 kDa peptidyl-prolyl cis-trans isomerase FkpB or SlpA or b0028 or c0032 or z0033 or ecs0031 or sf0024 SWALL:FKBX_ECOLI (SWALL:P22563) (148 aa) fasta scores: E(): 2.7e-33, 61.8% id in 144 aa; FKBP-type peptidylprolyl isomerase complement(4334383..4334856) Pectobacterium atrosepticum SCRI1043 2882211 YP_051963.1 CDS lspA NC_004547.2 4334856 4335368 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(4334856..4335368) Pectobacterium atrosepticum SCRI1043 2882261 YP_051964.1 CDS ileS NC_004547.2 4335368 4338181 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(4335368..4338181) Pectobacterium atrosepticum SCRI1043 2882280 YP_051965.1 CDS ribF NC_004547.2 4338213 4339154 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(4338213..4339154) Pectobacterium atrosepticum SCRI1043 2884784 YP_051966.1 CDS rpsT NC_004547.2 4339580 4339843 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 4339580..4339843 Pectobacterium atrosepticum SCRI1043 2884458 YP_051967.1 CDS nhaR NC_004547.2 4339921 4340841 R Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR complement(4339921..4340841) Pectobacterium atrosepticum SCRI1043 2882408 YP_051968.1 CDS nhaA NC_004547.2 4340889 4342070 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(4340889..4342070) Pectobacterium atrosepticum SCRI1043 2882751 YP_051969.1 CDS dnaJ NC_004547.2 4342359 4343498 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(4342359..4343498) Pectobacterium atrosepticum SCRI1043 2882235 YP_051970.1 CDS dnaK NC_004547.2 4343607 4345514 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(4343607..4345514) Pectobacterium atrosepticum SCRI1043 2882236 YP_051971.1 CDS ECA3883 NC_004547.2 4345979 4346554 D Similar to Yersinia pestis membrane protein ypo0467 or y3707 SWALL:Q8ZIM8 (EMBL:AJ414142) (203 aa) fasta scores: E(): 7.3e-60, 84.86% id in 185 aa, and to Salmonella typhimurium, and Salmonella typhi regulator yaah or stm0009 or sty0009 SWALL:Q8XGB2 (EMBL:AE008693) (188 aa) fasta scores: E(): 2.7e-54, 78.91% id in 185 aa; hypothetical protein 4345979..4346554 Pectobacterium atrosepticum SCRI1043 2885801 YP_051972.1 CDS ECA3884 NC_004547.2 4346668 4348005 R Similar to Yersinia pestis transport protein ypo0465 or y3709 SWALL:Q8ZIN0 (EMBL:AJ414142) (462 aa) fasta scores: E(): 4e-123, 75.82% id in 426 aa, and to Pseudomonas putida major facilitator family transporter pp5330 SWALL:AAN70895 (EMBL:AE016794) (429 aa) fasta scores: E(): 2.5e-108, 67.95% id in 415 aa; transporter complement(4346668..4348005) Pectobacterium atrosepticum SCRI1043 2885802 YP_051973.1 CDS mogA NC_004547.2 4348133 4348720 R forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA complement(4348133..4348720) Pectobacterium atrosepticum SCRI1043 2881229 YP_051974.1 CDS ECA3886 NC_004547.2 4349112 4350200 D Similar to the C-terminal region of many including Pseudomonas aeruginosa hypothetical protein Pa2870 SWALL:Q9HZX6 (EMBL:AE004713) (525 aa) fasta scores: E(): 1.9e-17, 39.39% id in 165 aa, and to Shewanella oneidensis ggdef domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2.1e-17, 39.03% id in 187 aa; hypothetical protein 4349112..4350200 Pectobacterium atrosepticum SCRI1043 2885803 YP_051975.1 CDS talB NC_004547.2 4350276 4351229 R Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B complement(4350276..4351229) Pectobacterium atrosepticum SCRI1043 2884319 YP_051976.1 CDS ECA3888 NC_004547.2 4351702 4352475 D Similar to Yersinia pestis hypothetical protein Ypo0462 SWALL:Q8ZIN3 (EMBL:AJ414142) (258 aa) fasta scores: E(): 5.4e-78, 79.76% id in 257 aa, and to Escherichia coli O6 protein yaaa or c0010 SWALL:AAN78510 (EMBL:AE016755) (258 aa) fasta scores: E(): 1.7e-77, 80.15% id in 257 aa; hypothetical protein 4351702..4352475 Pectobacterium atrosepticum SCRI1043 2885804 YP_051977.1 CDS thrC NC_004547.2 4352538 4353827 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(4352538..4353827) Pectobacterium atrosepticum SCRI1043 2884282 YP_051978.1 CDS thrB NC_004547.2 4353831 4354760 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(4353831..4354760) Pectobacterium atrosepticum SCRI1043 2884287 YP_051979.1 CDS thrA NC_004547.2 4354763 4357222 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I complement(4354763..4357222) Pectobacterium atrosepticum SCRI1043 2884286 YP_051980.1 CDS ECA3892 NC_004547.2 4357649 4358335 R member of the SPOUT superfamily of methyltransferases; RNA methyltransferase complement(4357649..4358335) Pectobacterium atrosepticum SCRI1043 2884920 YP_051981.1 CDS arcA NC_004547.2 4359083 4359799 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri aerobic respiration control protein ArcA or Dye or FexA or SfrA or Seg or Msp or CpxC or b4401 or c5488 or z6004 or ecs5359 or sf4433 SWALL:ARCA_ECOLI (SWALL:P03026) (238 aa) fasta scores: E(): 6.2e-85, 94.11% id in 238 aa; two-component response regulator 4359083..4359799 Pectobacterium atrosepticum SCRI1043 2884151 YP_051982.1 CDS creA NC_004547.2 4359856 4360338 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri crea protein CreA or b4397 or c5484 or z6000 or ecs5355 or sf4429 SWALL:CREA_ECOLI (SWALL:P08367) (157 aa) fasta scores: E(): 3e-45, 78.8% id in 151 aa, and to Yersinia pestis exported protein ypo0457 or CreA or y3722 SWALL:Q8ZIN8 (EMBL:AJ414142) (155 aa) fasta scores: E(): 6.9e-47, 84.93% id in 146 aa; hypothetical protein complement(4359856..4360338) Pectobacterium atrosepticum SCRI1043 2884941 YP_051983.1 CDS ECA3895 NC_004547.2 4360397 4360570 D hypothetical protein 4360397..4360570 Pectobacterium atrosepticum SCRI1043 2884921 YP_051984.1 CDS rob NC_004547.2 4360545 4361432 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri right origin-binding protein Rob or b4396 or z5999 or ecs5354 or sf4428 SWALL:ROB_ECOLI (SWALL:P27292) (289 aa) fasta scores: E(): 5e-81, 67.01% id in 288 aa; right origin-binding protein 4360545..4361432 Pectobacterium atrosepticum SCRI1043 2885030 YP_051985.1 CDS gpmB NC_004547.2 4361421 4362071 R catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase complement(4361421..4362071) Pectobacterium atrosepticum SCRI1043 2885503 YP_051986.1 CDS ECA3898 NC_004547.2 4362122 4362661 D pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 4362122..4362661 Pectobacterium atrosepticum SCRI1043 2884922 YP_051987.1 CDS trpR NC_004547.2 4362680 4363012 R When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor complement(4362680..4363012) Pectobacterium atrosepticum SCRI1043 2884237 YP_051988.1 CDS slt NC_004547.2 4363085 4365019 R catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase complement(4363085..4365019) Pectobacterium atrosepticum SCRI1043 2884382 YP_051989.1 CDS ECA3901 NC_004547.2 4365488 4367155 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 4365488..4367155 Pectobacterium atrosepticum SCRI1043 2884792 YP_051990.1 CDS ECA3902 NC_004547.2 4367239 4368966 R Similar to Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 2.9e-86, 54.69% id in 543 aa; methyl-accepting chemotaxis protein complement(4367239..4368966) Pectobacterium atrosepticum SCRI1043 2884793 YP_051991.1 CDS ECA3903 NC_004547.2 4369195 4370100 R Similar to Pseudomonas aeruginosa probable transcriptional regulator pa3135 SWALL:Q9HZ90 (EMBL:AE004737) (306 aa) fasta scores: E(): 4.1e-37, 38.92% id in 298 aa, and to Vibrio vulnificus transcriptional regulator vv21654 SWALL:AAO08512 (EMBL:AE016813) (307 aa) fasta scores: E(): 6.3e-35, 39.31% id in 290 aa; LysR family transcriptional regulator complement(4369195..4370100) Pectobacterium atrosepticum SCRI1043 2884794 YP_051992.1 CDS ECA3904 NC_004547.2 4370220 4371221 D Similar to Rhizobium meliloti oxidoreductase transmembrane protein r01036 or smc02380 SWALL:Q92R74 (EMBL:AL591785) (337 aa) fasta scores: E(): 3.6e-52, 46.26% id in 335 aa, and to Xanthomonas axonopodis oxidoreductase xac1011 SWALL:Q8PNP3 (EMBL:AE011730) (340 aa) fasta scores: E(): 1.4e-50, 46.15% id in 338 aa; zinc-binding dehydrogenase 4370220..4371221 Pectobacterium atrosepticum SCRI1043 2884795 YP_051993.1 CDS serA NC_004547.2 4371418 4372650 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(4371418..4372650) Pectobacterium atrosepticum SCRI1043 2884402 YP_051994.1 CDS rpiA NC_004547.2 4372945 4373604 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(4372945..4373604) Pectobacterium atrosepticum SCRI1043 2885022 YP_051995.1 CDS iciA NC_004547.2 4373843 4374736 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 4373843..4374736 Pectobacterium atrosepticum SCRI1043 2882858 YP_051996.1 CDS ECA3908 NC_004547.2 4374828 4375568 R Similar to Yersinia pestis exported protein ypo0917 SWALL:Q8ZHH7 (EMBL:AJ414145) (259 aa) fasta scores: E(): 4.9e-63, 75.83% id in 240 aa, and to Edwardsiella ictaluri hypothetical protein YggE SWALL:YGGE_EDWIC (SWALL:O52400) (239 aa) fasta scores: E(): 3.8e-55, 67.78% id in 239 aa; hypothetical protein complement(4374828..4375568) Pectobacterium atrosepticum SCRI1043 2884730 YP_051997.1 CDS ECA3909 NC_004547.2 4375759 4376373 R Involved in the export of arginine; arginine exporter protein complement(4375759..4376373) Pectobacterium atrosepticum SCRI1043 2884731 YP_051998.1 CDS ECA3910 NC_004547.2 4376580 4377440 R Similar to Yersinia pestis membrane protein ypo0919 or y3306 SWALL:Q8ZHH5 (EMBL:AJ414145) (289 aa) fasta scores: E(): 4.8e-77, 74.04% id in 289 aa, and to Escherichia coli O6 hypothetical protein yggb yggb or c3502 SWALL:AAN81950 (EMBL:AE016766) (286 aa) fasta scores: E(): 5.8e-69, 69.03% id in 281 aa; mechanosensitive ion channel complement(4376580..4377440) Pectobacterium atrosepticum SCRI1043 2884732 YP_051999.1 CDS fbaA NC_004547.2 4377564 4378640 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(4377564..4378640) Pectobacterium atrosepticum SCRI1043 2883136 YP_052000.1 CDS pgk NC_004547.2 4378778 4379941 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(4378778..4379941) Pectobacterium atrosepticum SCRI1043 2884904 YP_052001.1 CDS epd NC_004547.2 4380014 4381030 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(4380014..4381030) Pectobacterium atrosepticum SCRI1043 2884534 YP_052002.1 CDS tktA2 NC_004547.2 4381343 4383337 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(4381343..4383337) Pectobacterium atrosepticum SCRI1043 2884276 YP_052003.1 CDS ECA3915 NC_004547.2 4383748 4384500 D Similar to Salmonella typhimurium, and Salmonella typhi zn-dependent proteases with possible chaperone function yggg or stm3077 or sty3237 SWALL:Q8XGA5 (EMBL:AE008841) (252 aa) fasta scores: E(): 2.5e-63, 71.88% id in 249 aa, and to Yersinia pestis lipoprotein ypo0927 SWALL:Q8ZHH0 (EMBL:AJ414145) (250 aa) fasta scores: E(): 1.3e-67, 76.4% id in 250 aa; peptidase 4383748..4384500 Pectobacterium atrosepticum SCRI1043 2885001 YP_052004.1 CDS ECA3917 NC_004547.2 4385059 4385724 D Similar to Escherichia coli genes, complete cds, strain:b171 SWALL:Q93RC7 (EMBL:AB052736) (143 aa) fasta scores: E(): 0.18, 27.04% id in 122 aa; LuxR family transcriptional regulator 4385059..4385724 Pectobacterium atrosepticum SCRI1043 2885002 YP_052005.1 CDS speA NC_004547.2 4385783 4387762 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(4385783..4387762) Pectobacterium atrosepticum SCRI1043 2884371 YP_052006.1 CDS ECA3919 NC_004547.2 4388040 4388357 D hypothetical protein 4388040..4388357 Pectobacterium atrosepticum SCRI1043 2885003 YP_052007.1 CDS metK NC_004547.2 4388480 4389631 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 4388480..4389631 Pectobacterium atrosepticum SCRI1043 2883539 YP_052008.1 CDS sprT NC_004547.2 4389952 4390464 D Similar to Escherichia coli protein SprT or b2944 SWALL:SPRT_ECOLI (SWALL:P39902) (165 aa) fasta scores: E(): 4.5e-43, 68.51% id in 162 aa; hypothetical protein 4389952..4390464 Pectobacterium atrosepticum SCRI1043 2884365 YP_052009.1 CDS nucM NC_004547.2 4390561 4391259 D Similar to Erwinia chrysanthemi nuclease NucM precursor NucM SWALL:NUCM_ERWCH (SWALL:P37994) (266 aa) fasta scores: E(): 7.3e-80, 78.69% id in 230 aa, and to Escherichia coli endonuclease I precursor enda or b2945 SWALL:END1_ECOLI (SWALL:P25736) (235 aa) fasta scores: E(): 6.3e-76, 74.02% id in 231 aa; endonuclease 4390561..4391259 Pectobacterium atrosepticum SCRI1043 2884892 YP_052010.1 CDS ECA3923 NC_004547.2 4391555 4392289 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 4391555..4392289 Pectobacterium atrosepticum SCRI1043 2885709 YP_052011.1 CDS gshB NC_004547.2 4392301 4393260 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 4392301..4393260 Pectobacterium atrosepticum SCRI1043 2883841 YP_052012.1 CDS ECA3925 NC_004547.2 4393344 4393907 D Similar to Salmonella typhi hypothetical protein Sty3249 SWALL:Q8Z3V2 (EMBL:AL627277) (187 aa) fasta scores: E(): 8.8e-53, 71.65% id in 187 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein yqge or b2948 or c3534 or sf2939 SWALL:YQGE_ECOLI (SWALL:P52049) (187 aa) fasta scores: E(): 1.6e-52, 69.51% id in 187 aa; hypothetical protein 4393344..4393907 Pectobacterium atrosepticum SCRI1043 2885710 YP_052013.1 CDS ECA3926 NC_004547.2 4393907 4394326 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 4393907..4394326 Pectobacterium atrosepticum SCRI1043 2885711 YP_052014.1 CDS fbp NC_004547.2 4394430 4395434 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(4394430..4395434) Pectobacterium atrosepticum SCRI1043 2883137 YP_052015.1 CDS mpl NC_004547.2 4395604 4396995 D Similar to Escherichia coli UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diamino pimelate ligase Mpl or b4233 SWALL:MPL_ECOLI (SWALL:P37773) (457 aa) fasta scores: E(): 9.9e-158, 82.05% id in 457 aa; udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me so-diaminopimelate ligase 4395604..4396995 Pectobacterium atrosepticum SCRI1043 2881695 YP_052016.1 CDS purA NC_004547.2 4397095 4398393 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(4397095..4398393) Pectobacterium atrosepticum SCRI1043 2881462 YP_052017.1 CDS ECA3930 NC_004547.2 4398493 4398693 R Similar to Yersinia pestis membrane protein ypo0377 SWALL:Q8ZIV8 (EMBL:AJ414142) (66 aa) fasta scores: E(): 4e-19, 78.46% id in 65 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjet or b4176 or z5783 or ecs5152 or sf4331 SWALL:AAN45748 (EMBL:U14003) (65 aa) fasta scores: E(): 1.8e-17, 70.76% id in 65 aa; hypothetical protein complement(4398493..4398693) Pectobacterium atrosepticum SCRI1043 2885712 YP_052018.1 CDS hflC NC_004547.2 4398820 4399815 R with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC complement(4398820..4399815) Pectobacterium atrosepticum SCRI1043 2885472 YP_052019.1 CDS hflK NC_004547.2 4399819 4401072 R with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK complement(4399819..4401072) Pectobacterium atrosepticum SCRI1043 2885473 YP_052020.1 CDS hflX NC_004547.2 4401165 4402445 R involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX complement(4401165..4402445) Pectobacterium atrosepticum SCRI1043 2885474 YP_052021.1 CDS hfq NC_004547.2 4402540 4402839 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(4402540..4402839) Pectobacterium atrosepticum SCRI1043 2885475 YP_052022.1 CDS miaA NC_004547.2 4402952 4403893 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(4402952..4403893) Pectobacterium atrosepticum SCRI1043 2883180 YP_052023.1 CDS mutL NC_004547.2 4403886 4405841 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(4403886..4405841) Pectobacterium atrosepticum SCRI1043 2882087 YP_052024.1 CDS amiB NC_004547.2 4405893 4407563 R Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa; N-acetylmuramoyl-L-alanine amidase complement(4405893..4407563) Pectobacterium atrosepticum SCRI1043 2884190 YP_052025.1 CDS ECA3938 NC_004547.2 4407560 4408042 R possibly involved in cell wall synthesis; ATPase complement(4407560..4408042) Pectobacterium atrosepticum SCRI1043 2885688 YP_052026.1 CDS ECA3939 NC_004547.2 4408062 4409618 R Similar to Yersinia pestis hypothetical protein ypo0368 ypo0368 or y0625 SWALL:Q8ZIW7 (EMBL:AJ414142) (504 aa) fasta scores: E(): 6e-120, 62.13% id in 507 aa, and to Salmonella typhimurium sugar kinase yjef or stm4356 SWALL:Q8ZKA7 (EMBL:AE008904) (515 aa) fasta scores: E(): 1.1e-118, 62.32% id in 507 aa; hypothetical protein complement(4408062..4409618) Pectobacterium atrosepticum SCRI1043 2885689 YP_052027.1 CDS ECA3940 NC_004547.2 4409761 4410900 D Similar to Escherichia coli O6 electron transport protein yjes or c5250 SWALL:AAN83672 (EMBL:AE016771) (394 aa) fasta scores: E(): 1.2e-129, 80.73% id in 379 aa, and to Salmonella typhimurium fe-s protein yjes or stm4355 SWALL:Q8ZKA8 (EMBL:AE008904) (384 aa) fasta scores: E(): 7.6e-129, 79.94% id in 379 aa; 4Fe-4S binding protein 4409761..4410900 Pectobacterium atrosepticum SCRI1043 2885690 YP_052028.1 CDS ahpF NC_004547.2 4411424 4413004 R Similar to Escherichia coli alkyl hydroperoxide reductase subunit F AhpF or b0606 SWALL:AHPF_ECOLI (SWALL:P35340) (521 aa) fasta scores: E(): 3.1e-149, 78.09% id in 525 aa; alkyl hydroperoxide reductase complement(4411424..4413004) Pectobacterium atrosepticum SCRI1043 2883202 YP_052029.1 CDS ahpC NC_004547.2 4413135 4413698 R with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase complement(4413135..4413698) Pectobacterium atrosepticum SCRI1043 2883201 YP_052030.1 CDS ECA3943 NC_004547.2 4413809 4415560 R Similar to Xanthomonas campestris hypothetical protein Xcc2749 SWALL:Q8P764 (EMBL:AE012388) (618 aa) fasta scores: E(): 1.9e-27, 29.05% id in 592 aa, and to Caulobacter crescentus hypothetical protein Cc3419 SWALL:Q9A2Y7 (EMBL:AE006002) (582 aa) fasta scores: E(): 2.8e-27, 28.7% id in 554 aa; hypothetical protein complement(4413809..4415560) Pectobacterium atrosepticum SCRI1043 2885739 YP_052031.1 CDS ECA3944 NC_004547.2 4415557 4415766 R Similar to Chilo iridescent virus 073r SWALL:Q91G35 (EMBL:AF303741) (67 aa) fasta scores: E(): 8.1, 26.98% id in 63 aa; phage-like protein complement(4415557..4415766) Pectobacterium atrosepticum SCRI1043 2885740 YP_052032.1 CDS ECA3945 NC_004547.2 4415814 4416323 D hypothetical protein 4415814..4416323 Pectobacterium atrosepticum SCRI1043 2885741 YP_052033.1 CDS ECA3946 NC_004547.2 4417003 4418481 R hypothetical protein complement(4417003..4418481) Pectobacterium atrosepticum SCRI1043 2885742 YP_052034.1 CDS ECA3947 NC_004547.2 4418704 4419630 R Similar to Pseudomonas putida D-isomer specific 2-hydroxyacid dehydrogenase family protein pp4589 SWALL:AAN70162 (EMBL:AE016791) (310 aa) fasta scores: E(): 4.3e-61, 56.63% id in 309 aa, and to Pseudomonas aeruginosa probable 2-hydroxyacid dehydrogenase pa1296 SWALL:Q9I448 (EMBL:AE004559) (310 aa) fasta scores: E(): 5.3e-54, 51.94% id in 308 aa; D-isomer specific 2-hydroxyacid dehydrogenase complement(4418704..4419630) Pectobacterium atrosepticum SCRI1043 2885729 YP_052035.1 CDS ECA3948 NC_004547.2 4419692 4420816 R hypothetical protein complement(4419692..4420816) Pectobacterium atrosepticum SCRI1043 2885730 YP_052036.1 CDS ECA3949 NC_004547.2 4420813 4421475 R hypothetical protein complement(4420813..4421475) Pectobacterium atrosepticum SCRI1043 2885731 YP_052037.1 CDS ECA3950 NC_004547.2 4421779 4422828 R Similar to Xylella fastidiosa alcohol dehydrogenase xf1746 SWALL:Q9PCN2 (EMBL:AE003997) (349 aa) fasta scores: E(): 3.1e-116, 84.81% id in 349 aa, and to Escherichia coli hypothetical zinc-type alcohol dehydrogenase-like protein yahk or b0325 SWALL:YAHK_ECOLI (SWALL:P75691) (349 aa) fasta scores: E(): 9.9e-111, 80.17% id in 348 aa; zinc-binding dehydrogenase complement(4421779..4422828) Pectobacterium atrosepticum SCRI1043 2884030 YP_052038.1 CDS ECA3951 NC_004547.2 4423296 4423913 R Similar to Pseudomonas putida transporter, LysE family pp0699 SWALL:AAN66324 (EMBL:AE016776) (204 aa) fasta scores: E(): 5.4e-51, 66.01% id in 203 aa, and to Rhizobium meliloti amino acid efflux transmembrane protein r03051 or smc02484 SWALL:Q92LJ7 (EMBL:AL591792) (214 aa) fasta scores: E(): 1.5e-25, 39.8% id in 206 aa; LysE-type translocator complement(4423296..4423913) Pectobacterium atrosepticum SCRI1043 2884031 YP_052039.1 CDS ECA3952 NC_004547.2 4424160 4425050 D Similar to Pseudomonas putida transcriptional regulator, LysR family pp0698 SWALL:AAN66323 (EMBL:AE016776) (305 aa) fasta scores: E(): 3.1e-76, 64.93% id in 288 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator gcva or b2808 or c3378 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 6.4e-26, 33.67% id in 297 aa; LysR family transcriptional regulator 4424160..4425050 Pectobacterium atrosepticum SCRI1043 2884032 YP_052040.1 CDS ECA3953 NC_004547.2 4425070 4426236 D Similar to Pseudomonas putida major facilitator family transporter pp0702 SWALL:AAN66327 (EMBL:AE016776) (385 aa) fasta scores: E(): 3.2e-42, 39.62% id in 371 aa, and to Rhizobium loti probable transporter mll1210 SWALL:Q98L25 (EMBL:AP002996) (393 aa) fasta scores: E(): 2.8e-21, 27.82% id in 381 aa; transporter 4425070..4426236 Pectobacterium atrosepticum SCRI1043 2883805 YP_052041.1 CDS ECA3954 NC_004547.2 4426301 4427116 R Similar to Escherichia coli taurine transport ATP-binding protein TauB or ssib or b0366 SWALL:TAUB_ECOLI (SWALL:Q47538) (255 aa) fasta scores: E(): 2.6e-24, 36.82% id in 258 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu0159 or agr_c_259 SWALL:Q8UIY2 (EMBL:AE008990) (266 aa) fasta scores: E(): 7.8e-26, 35.79% id in 257 aa; ABC transporter ATP-binding protein complement(4426301..4427116) Pectobacterium atrosepticum SCRI1043 2883806 YP_052042.1 CDS ECA3955 NC_004547.2 4427116 4427880 R Similar to Rhizobium meliloti transport system permease ABC transporter protein r02573 or smc02345 SWALL:Q92MP0 (EMBL:AL591791) (287 aa) fasta scores: E(): 1e-24, 33.46% id in 245 aa, and to Pseudomonas putida ABC-type transporter membrane permease component TauC SWALL:Q8KZR5 (EMBL:AB086390) (279 aa) fasta scores: E(): 2e-19, 29.41% id in 255 aa; ABC transporter protein, membrane protein complement(4427116..4427880) Pectobacterium atrosepticum SCRI1043 2883807 YP_052043.1 CDS ECA3956 NC_004547.2 4427896 4428915 R Similar to Bacillus subtilis aliphatic sulfonates binding protein precursor SsuA SWALL:SSUA_BACSU (SWALL:P40400) (332 aa) fasta scores: E(): 8.5e-06, 23.17% id in 302 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu4154 or agr_l_1399 SWALL:Q8U8D8 (EMBL:AE009345) (338 aa) fasta scores: E(): 1.3e-07, 29.91% id in 224 aa; ABC transporter substrate binding protein complement(4427896..4428915) Pectobacterium atrosepticum SCRI1043 2883808 YP_052044.1 CDS ECA3957 NC_004547.2 4429287 4429982 R Similar to Clostridium perfringens hypothetical protein Cpe0762 cpe0762 SWALL:Q8XMC7 (EMBL:AP003188) (230 aa) fasta scores: E(): 2.8e-26, 34.8% id in 227 aa, and to Bacillus subtilis YfnB yfnB SWALL:O06480 (EMBL:D86418) (235 aa) fasta scores: E(): 5e-24, 34.34% id in 230 aa; hydrolase complement(4429287..4429982) Pectobacterium atrosepticum SCRI1043 2883732 YP_052045.1 CDS ECA3958 NC_004547.2 4429979 4431211 R Similar to Pseudomonas aeruginosa probable MFS transporter pa2314 SWALL:Q9I1G1 (EMBL:AE004657) (417 aa) fasta scores: E(): 2.2e-54, 44.2% id in 371 aa, and to Streptomyces capreolus hypothetical protein SWALL:CAD62207 (EMBL:X84374) (436 aa) fasta scores: E(): 8.2e-57, 44.53% id in 375 aa; transporter complement(4429979..4431211) Pectobacterium atrosepticum SCRI1043 2883733 YP_052046.1 CDS ECA3959 NC_004547.2 4431399 4431722 R Similar to Lactococcus lactis transcription regulator yrfa or ll1694 SWALL:Q9CEY9 (EMBL:AE006400) (100 aa) fasta scores: E(): 2.1e-10, 39.78% id in 93 aa, and to Rhizobium loti hypothetical protein Mll3509 SWALL:Q98G33 (EMBL:AP003002) (100 aa) fasta scores: E(): 7.9e-11, 47.61% id in 84 aa; transcriptional regulator ArsR complement(4431399..4431722) Pectobacterium atrosepticum SCRI1043 2883734 YP_052047.1 CDS ECA3960 NC_004547.2 4431770 4432609 D Similar to Rhizobium loti hypothetical protein Mll5179 SWALL:Q98CE8 (EMBL:AP003005) (271 aa) fasta scores: E(): 1.5e-60, 55.72% id in 262 aa, and to Streptomyces coelicolor possible oxidoreductase sco0526 or scf11.06 SWALL:Q9RK83 (EMBL:AL939105) (277 aa) fasta scores: E(): 3.5e-44, 46.69% id in 257 aa; hydrolase 4431770..4432609 Pectobacterium atrosepticum SCRI1043 2883545 YP_052048.1 CDS ECA3961 NC_004547.2 4432620 4433255 D Similar to Rhizobium loti hypothetical protein Mll1199 SWALL:Q98L32 (EMBL:AP002996) (204 aa) fasta scores: E(): 3.2e-11, 29.01% id in 193 aa, and to Rhizobium meliloti transcriptional regulator protein rb1009 or smb21569 SWALL:Q92US9 (EMBL:AL603645) (199 aa) fasta scores: E(): 1.1e-06, 27.55% id in 196 aa; hypothetical protein 4432620..4433255 Pectobacterium atrosepticum SCRI1043 2883546 YP_052049.1 CDS ECA3962 NC_004547.2 4433307 4433852 R hypothetical protein complement(4433307..4433852) Pectobacterium atrosepticum SCRI1043 2883547 YP_052050.1 CDS ECA3963 NC_004547.2 4433915 4434142 R hypothetical protein complement(4433915..4434142) Pectobacterium atrosepticum SCRI1043 2883548 YP_052051.1 CDS orn NC_004547.2 4434803 4435345 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(4434803..4435345) Pectobacterium atrosepticum SCRI1043 2885561 YP_052052.1 CDS ECA3965 NC_004547.2 4435653 4436702 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4435653..4436702 Pectobacterium atrosepticum SCRI1043 2883514 YP_052053.1 CDS psd NC_004547.2 4436846 4437871 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4436846..4437871 Pectobacterium atrosepticum SCRI1043 2882499 YP_052054.1 CDS bspA NC_004547.2 4437926 4441249 D Similar to Erwinia chrysanthemi BspA protein precursor BspA SWALL:Q9EV03 (EMBL:AJ251781) (1106 aa) fasta scores: E(): 0, 77.97% id in 1108 aa, and to Yersinia pestis membrane transport protein ypo0363 or y0619 SWALL:AAM84207 (EMBL:AJ414142) (1119 aa) fasta scores: E(): 0, 71.54% id in 1114 aa; hypothetical protein 4437926..4441249 Pectobacterium atrosepticum SCRI1043 2885476 YP_052055.1 CDS poxA NC_004547.2 4441333 4442310 R lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase complement(4441333..4442310) Pectobacterium atrosepticum SCRI1043 2885667 YP_052056.1 CDS frdA NC_004547.2 4442783 4444579 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 4442783..4444579 Pectobacterium atrosepticum SCRI1043 2885172 YP_052057.1 CDS frdB NC_004547.2 4444572 4445309 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 4444572..4445309 Pectobacterium atrosepticum SCRI1043 2885173 YP_052058.1 CDS frdC NC_004547.2 4445320 4445718 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 4445320..4445718 Pectobacterium atrosepticum SCRI1043 2885063 YP_052059.1 CDS frdD NC_004547.2 4445733 4446089 D in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 4445733..4446089 Pectobacterium atrosepticum SCRI1043 2885064 YP_052060.1 CDS blc NC_004547.2 4446212 4446796 D lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 4446212..4446796 Pectobacterium atrosepticum SCRI1043 2882502 YP_052061.1 CDS ECA3974 NC_004547.2 4446837 4447190 R Similar to Shewanella oneidensis conserved hypothetical protein so1373 SWALL:AAN54438 (EMBL:AE015581) (116 aa) fasta scores: E(): 9.4e-33, 68.42% id in 114 aa, and to Vibrio cholerae hypothetical protein Vc1574 SWALL:Q9KRR2 (EMBL:AE004235) (127 aa) fasta scores: E(): 4.2e-32, 66.66% id in 114 aa; hypothetical protein complement(4446837..4447190) Pectobacterium atrosepticum SCRI1043 2883515 YP_052062.1 CDS ecnB NC_004547.2 4447304 4447435 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri entericidin B precursor EcnB or b4147.2 or c5235 or z5754 or ecs5128.2 or sf4305 SWALL:ECNB_ECOLI (SWALL:P56549) (48 aa) fasta scores: E(): 2.8e-06, 61.53% id in 39 aa; entericidin B complement(4447304..4447435) Pectobacterium atrosepticum SCRI1043 2881724 YP_052063.1 CDS efp NC_004547.2 4447619 4448185 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(4447619..4448185) Pectobacterium atrosepticum SCRI1043 2881722 YP_052064.1 CDS ECA3977 NC_004547.2 4448227 4449270 D Similar to Yersinia pestis hypothetical protein ypo0353 or y0611 SWALL:Q8ZIY1 (EMBL:AJ414142) (342 aa) fasta scores: E(): 1e-110, 80.11% id in 342 aa, and to Escherichia coli O6 hypothetical protein yjek or c5231 SWALL:AAN83653 (EMBL:AE016771) (342 aa) fasta scores: E(): 7.7e-107, 75.73% id in 342 aa; hypothetical protein 4448227..4449270 Pectobacterium atrosepticum SCRI1043 2883516 YP_052065.1 CDS ECA3978 NC_004547.2 4449335 4449679 R Similar to Yersinia pestis lipoprotein ypo0352 SWALL:Q8ZIY2 (EMBL:AJ414142) (128 aa) fasta scores: E(): 4.4e-29, 71.93% id in 114 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yjei precursor yjei or b4144 or c5228 or sf4298 SWALL:YJEI_ECOLI (SWALL:P39278) (117 aa) fasta scores: E(): 9.7e-24, 60.34% id in 116 aa; lipoprotein complement(4449335..4449679) Pectobacterium atrosepticum SCRI1043 2883477 YP_052066.1 CDS pgi NC_004547.2 4449723 4451372 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(4449723..4451372) Pectobacterium atrosepticum SCRI1043 2885797 YP_052067.1 CDS ECA3980 NC_004547.2 4451528 4451728 R hypothetical protein complement(4451528..4451728) Pectobacterium atrosepticum SCRI1043 2883478 YP_052068.1 CDS lysC NC_004547.2 4451863 4453239 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase 4451863..4453239 Pectobacterium atrosepticum SCRI1043 2882264 YP_052069.1 CDS ECA3982 NC_004547.2 4453357 4453578 D hypothetical protein 4453357..4453578 Pectobacterium atrosepticum SCRI1043 2883479 YP_052070.1 CDS ECA3983 NC_004547.2 4453595 4455241 R Similar to Escherichia coli O6 hypothetical protein yjbb or c4979 SWALL:AAN83405 (EMBL:AE016770) (543 aa) fasta scores: E(): 3.1e-138, 69.24% id in 543 aa, and to Salmonella typhimurium hypothetical protein yjbb or stm4189 SWALL:YJBB_SALTY (SWALL:P40730) (543 aa) fasta scores: E(): 4.1e-138, 69.98% id in 543 aa; sodium/phosphate cotransporter complement(4453595..4455241) Pectobacterium atrosepticum SCRI1043 2883373 YP_052071.1 CDS ECA3984 NC_004547.2 4455549 4457003 D Similar to Salmonella typhi possible membrane transport protein sty3340 SWALL:Q8Z3Q1 (EMBL:AL627277) (484 aa) fasta scores: E(): 4e-162, 82.02% id in 484 aa, and to Clostridium acetobutylicum 2-oxoglutarate/malate translocator cac1590 SWALL:Q97IQ0 (EMBL:AE007668) (476 aa) fasta scores: E(): 6.8e-87, 46.57% id in 481 aa; sodium:sulfate symporter 4455549..4457003 Pectobacterium atrosepticum SCRI1043 2883374 YP_052072.1 CDS foxA NC_004547.2 4457075 4459180 R Similar to Salmonella typhimurium ferrioxamine B receptor precursor fFoxA or stm0364 SWALL:FOXA_SALTY (SWALL:Q56145) (702 aa) fasta scores: E(): 1.8e-207, 74.35% id in 702 aa; ferrioxamine B receptor complement(4457075..4459180) Pectobacterium atrosepticum SCRI1043 2885080 YP_052073.1 CDS ECA3986 NC_004547.2 4459373 4460329 R Similar to Bordetella pertussis AlcR SWALL:O52066 (EMBL:AF018255) (324 aa) fasta scores: E(): 1.6e-31, 38.85% id in 314 aa, and to Salmonella typhi AraC-family transcriptional regulator sty0395 SWALL:Q8Z909 (EMBL:AL627266) (334 aa) fasta scores: E(): 2.3e-66, 57.72% id in 317 aa; AraC family transcriptional regulator complement(4459373..4460329) Pectobacterium atrosepticum SCRI1043 2883375 YP_052074.1 CDS metH NC_004547.2 4460847 4464530 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(4460847..4464530) Pectobacterium atrosepticum SCRI1043 2883939 YP_052075.1 CDS iclR NC_004547.2 4464724 4465554 D regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; IclR family transcriptional regulator 4464724..4465554 Pectobacterium atrosepticum SCRI1043 2882763 YP_052076.1 CDS aceK NC_004547.2 4465850 4467628 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein complement(4465850..4467628) Pectobacterium atrosepticum SCRI1043 2884796 YP_052077.1 CDS aceA NC_004547.2 4467675 4468982 R Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase complement(4467675..4468982) Pectobacterium atrosepticum SCRI1043 2885205 YP_052078.1 CDS aceB NC_004547.2 4469014 4470612 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(4469014..4470612) Pectobacterium atrosepticum SCRI1043 2884500 YP_052079.1 CDS metA NC_004547.2 4470898 4471827 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(4470898..4471827) Pectobacterium atrosepticum SCRI1043 2883957 YP_052080.1 CDS ECA3993 NC_004547.2 4477982 4478530 D Similar to Yersinia pestis transferase y4029 SWALL:AAM87573 (EMBL:AE014004) (193 aa) fasta scores: E(): 3.4e-50, 76.3% id in 173 aa, and to Salmonella typhi transferase yrda or sty4398 SWALL:Q8Z1W3 (EMBL:AL627282) (184 aa) fasta scores: E(): 6.7e-50, 74.43% id in 176 aa; transferase 4477982..4478530 Pectobacterium atrosepticum SCRI1043 2883376 YP_052081.1 CDS ECA3994 NC_004547.2 4478515 4478772 R Similar to Salmonella typhi hypothetical protein yrdb or sty4397 SWALL:Q8Z1W4 (EMBL:AL627282) (85 aa) fasta scores: E(): 1.2e-18, 58.82% id in 85 aa, and to Escherichia coli hypothetical protein yrdb or b3280 SWALL:YRDB_ECOLI (SWALL:P45795) (85 aa) fasta scores: E(): 1.7e-18, 58.02% id in 81 aa; hypothetical protein complement(4478515..4478772) Pectobacterium atrosepticum SCRI1043 2883331 YP_052082.1 CDS aroE NC_004547.2 4478769 4479596 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(4478769..4479596) Pectobacterium atrosepticum SCRI1043 2884134 YP_052083.1 CDS ECA3996 NC_004547.2 4479616 4480734 R Similar to Shigella flexneri DNA topoisomerase yrdd or sf3315 SWALL:AAN44778 (EMBL:AE015342) (180 aa) fasta scores: E(): 8.8e-54, 72.77% id in 180 aa, and to Salmonella typhi hypothetical protein yrdd or sty4394 SWALL:Q8Z1W7 (EMBL:AL627282) (180 aa) fasta scores: E(): 8.1e-53, 70% id in 180 aa; DNA topoisomerase complement(4479616..4480734) Pectobacterium atrosepticum SCRI1043 2883332 YP_052084.1 CDS smg NC_004547.2 4480755 4481228 R Similar to Escherichia coli, and Shigella flexneri protein Smg or b3284 or sf3316 SWALL:SMG_ECOLI (SWALL:P30853) (157 aa) fasta scores: E(): 6.6e-48, 76.43% id in 157 aa, and to Salmonella typhimurium, and Salmonella typhi Smg protein homolog Smg or stm3404 or sty4393 or t4100 SWALL:SMG_SALTY (SWALL:Q8XFK8) (157 aa) fasta scores: E(): 8.8e-49, 78.34% id in 157 aa; hypothetical protein complement(4480755..4481228) Pectobacterium atrosepticum SCRI1043 2884379 YP_052085.1 CDS smf NC_004547.2 4481200 4482321 R Similar to Escherichia coli Smf protein Smf or b3285/b3286 SWALL:SMF_ECOLI (SWALL:P30852) (374 aa) fasta scores: E(): 1.5e-79, 57.75% id in 374 aa, and to Yersinia pestis hypothetical protein ypo0243 ypo0243 or Smf1 or y4024 SWALL:Q8ZJ78 (EMBL:AJ414141) (373 aa) fasta scores: E(): 1.6e-82, 60.32% id in 373 aa; DNA protecting protein DprA complement(4481200..4482321) Pectobacterium atrosepticum SCRI1043 2884385 YP_052086.1 CDS def NC_004547.2 4482450 4482959 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 4482450..4482959 Pectobacterium atrosepticum SCRI1043 2881920 YP_052087.1 CDS fmt NC_004547.2 4482986 4483933 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 4482986..4483933 Pectobacterium atrosepticum SCRI1043 2882537 YP_052088.1 CDS sun NC_004547.2 4484001 4485290 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase GidB 4484001..4485290 Pectobacterium atrosepticum SCRI1043 2884326 YP_052089.1 CDS trkA NC_004547.2 4485347 4486723 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 4485347..4486723 Pectobacterium atrosepticum SCRI1043 2884247 YP_052090.1 CDS mscL NC_004547.2 4486815 4487225 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 4486815..4487225 Pectobacterium atrosepticum SCRI1043 2881208 YP_052091.1 CDS ECA4004 NC_004547.2 4487256 4487468 R Similar to Yersinia pestis hypothetical protein ypo0237 or y4018 SWALL:Q8ZJ84 (EMBL:AJ414141) (66 aa) fasta scores: E(): 3.9e-18, 74.24% id in 66 aa, and to Escherichia coli hypothetical protein yhdl or b3291.1 SWALL:YHDL_ECOLI (SWALL:P36675) (72 aa) fasta scores: E(): 4.3e-16, 60.87% id in 69 aa; hypothetical protein complement(4487256..4487468) Pectobacterium atrosepticum SCRI1043 2883333 YP_052092.1 CDS rplQ NC_004547.2 4487676 4488068 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(4487676..4488068) Pectobacterium atrosepticum SCRI1043 2883617 YP_052093.1 CDS rpoA NC_004547.2 4488109 4489098 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(4488109..4489098) Pectobacterium atrosepticum SCRI1043 2884488 YP_052094.1 CDS rpsD NC_004547.2 4489124 4489744 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(4489124..4489744) Pectobacterium atrosepticum SCRI1043 2884474 YP_052095.1 CDS rpsK NC_004547.2 4489775 4490164 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(4489775..4490164) Pectobacterium atrosepticum SCRI1043 2884469 YP_052096.1 CDS rpsM NC_004547.2 4490181 4490537 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(4490181..4490537) Pectobacterium atrosepticum SCRI1043 2884464 YP_052097.1 CDS rpmJ NC_004547.2 4490684 4490800 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(4490684..4490800) Pectobacterium atrosepticum SCRI1043 2884492 YP_052098.1 CDS secY NC_004547.2 4490834 4492165 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(4490834..4492165) Pectobacterium atrosepticum SCRI1043 2884406 YP_052099.1 CDS rplO NC_004547.2 4492173 4492607 R late assembly protein; 50S ribosomal protein L15 complement(4492173..4492607) Pectobacterium atrosepticum SCRI1043 2883748 YP_052100.1 CDS rpmD NC_004547.2 4492611 4492790 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(4492611..4492790) Pectobacterium atrosepticum SCRI1043 2883081 YP_052101.1 CDS rpsE NC_004547.2 4492797 4493297 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(4492797..4493297) Pectobacterium atrosepticum SCRI1043 2884475 YP_052102.1 CDS rplR NC_004547.2 4493312 4493665 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(4493312..4493665) Pectobacterium atrosepticum SCRI1043 2883618 YP_052103.1 CDS rplF NC_004547.2 4493675 4494208 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(4493675..4494208) Pectobacterium atrosepticum SCRI1043 2883966 YP_052104.1 CDS rpsH NC_004547.2 4494222 4494614 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(4494222..4494614) Pectobacterium atrosepticum SCRI1043 2884472 YP_052105.1 CDS rpsN NC_004547.2 4494648 4494953 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(4494648..4494953) Pectobacterium atrosepticum SCRI1043 2884465 YP_052106.1 CDS rplE NC_004547.2 4494967 4495506 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(4494967..4495506) Pectobacterium atrosepticum SCRI1043 2885021 YP_052107.1 CDS rplX NC_004547.2 4495521 4495835 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(4495521..4495835) Pectobacterium atrosepticum SCRI1043 2883130 YP_052108.1 CDS rplN NC_004547.2 4495846 4496217 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(4495846..4496217) Pectobacterium atrosepticum SCRI1043 2883747 YP_052109.1 CDS rpsQ NC_004547.2 4496381 4496635 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(4496381..4496635) Pectobacterium atrosepticum SCRI1043 2884461 YP_052110.1 CDS rpmC NC_004547.2 4496635 4496826 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 50S ribosomal protein L29 RpmC or b3312 or c4077 or z4683 or ecs4177 SWALL:RL29_ECOLI (SWALL:P02429) (63 aa) fasta scores: E(): 2.5e-18, 84.12% id in 63 aa; 50S ribosomal protein L29 complement(4496635..4496826) Pectobacterium atrosepticum SCRI1043 2883080 YP_052111.1 CDS rplP NC_004547.2 4496826 4497236 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(4496826..4497236) Pectobacterium atrosepticum SCRI1043 2883749 YP_052112.1 CDS rpsC NC_004547.2 4497249 4497950 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(4497249..4497950) Pectobacterium atrosepticum SCRI1043 2884479 YP_052113.1 CDS rplV NC_004547.2 4497968 4498300 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(4497968..4498300) Pectobacterium atrosepticum SCRI1043 2883229 YP_052114.1 CDS rpsS NC_004547.2 4498315 4498593 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(4498315..4498593) Pectobacterium atrosepticum SCRI1043 2884463 YP_052115.1 CDS rplB NC_004547.2 4498610 4499431 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(4498610..4499431) Pectobacterium atrosepticum SCRI1043 2885025 YP_052116.1 CDS rplW NC_004547.2 4499449 4499751 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(4499449..4499751) Pectobacterium atrosepticum SCRI1043 2883230 YP_052117.1 CDS rplD NC_004547.2 4499748 4500353 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(4499748..4500353) Pectobacterium atrosepticum SCRI1043 2885020 YP_052118.1 CDS rplC NC_004547.2 4500364 4500993 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(4500364..4500993) Pectobacterium atrosepticum SCRI1043 2885019 YP_052119.1 CDS rpsJ NC_004547.2 4501026 4501337 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(4501026..4501337) Pectobacterium atrosepticum SCRI1043 2884468 YP_052120.1 CDS bfr NC_004547.2 4501644 4502117 R iron storage protein; bacterioferritin complement(4501644..4502117) Pectobacterium atrosepticum SCRI1043 2882018 YP_052121.1 CDS bfd NC_004547.2 4502190 4502384 R Similar to Escherichia coli, and Escherichia coli O6 bacterioferritin-associated ferredoxin Bfd or b3337 or c4108 SWALL:BFD_ECOLI (SWALL:P13655) (64 aa) fasta scores: E(): 4.1e-13, 56.25% id in 64 aa; bacterioferritin-associated ferredoxin complement(4502190..4502384) Pectobacterium atrosepticum SCRI1043 2881645 YP_052122.1 CDS tuf NC_004547.2 4502588 4503772 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(4502588..4503772) Pectobacterium atrosepticum SCRI1043 2884227 YP_052123.1 CDS fusA NC_004547.2 4503842 4505956 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(4503842..4505956) Pectobacterium atrosepticum SCRI1043 2883271 YP_052124.1 CDS rpsG NC_004547.2 4506053 4506523 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(4506053..4506523) Pectobacterium atrosepticum SCRI1043 2884471 YP_052125.1 CDS rpsL NC_004547.2 4506620 4506994 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(4506620..4506994) Pectobacterium atrosepticum SCRI1043 2884470 YP_052126.1 CDS dsrH NC_004547.2 4507126 4507413 R Similar to Chromatium vinosum DsrH SWALL:O87898 (EMBL:U84760) (102 aa) fasta scores: E(): 3.5e-05, 32.32% id in 99 aa, and to Escherichia coli hypothetical protein yhel or b3343 SWALL:YHEL_ECOLI (SWALL:P45530) (95 aa) fasta scores: E(): 1.1e-14, 52.63% id in 95 aa; intracellular sulfur oxidation protein complement(4507126..4507413) Pectobacterium atrosepticum SCRI1043 2881854 YP_052127.1 CDS dsrF NC_004547.2 4507432 4507791 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC complement(4507432..4507791) Pectobacterium atrosepticum SCRI1043 2885431 YP_052128.1 CDS dsrE NC_004547.2 4507801 4508190 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD complement(4507801..4508190) Pectobacterium atrosepticum SCRI1043 2885430 YP_052129.1 CDS ECA4042 NC_004547.2 4508190 4508912 R Similar to Yersinia pestis DNA-binding protein ypo0196 or y3978 SWALL:Q8ZJB9 (EMBL:AJ414141) (244 aa) fasta scores: E(): 1.9e-82, 90.41% id in 240 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yheo or b3346 or c4120 or sf3364 SWALL:YHEO_ECOLI (SWALL:P45533) (240 aa) fasta scores: E(): 9.4e-80, 85.83% id in 240 aa; DNA-binding protein complement(4508190..4508912) Pectobacterium atrosepticum SCRI1043 2883305 YP_052130.1 CDS pmrC NC_004547.2 4509286 4510932 D with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; cell division protein 4509286..4510932 Pectobacterium atrosepticum SCRI1043 2883274 YP_052131.1 CDS pmrA NC_004547.2 4510929 4511597 D response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR 4510929..4511597 Pectobacterium atrosepticum SCRI1043 2883303 YP_052132.1 CDS pmrB NC_004547.2 4511594 4512688 D Similar to Pectobacterium carotovorum subsp. carotovorum sensor kinase PmrB SWALL:CAE47080 (EMBL:AJ583007) (364 aa) fasta scores: E(): 1.5e-125, 94.78% id in 364 aa, and to Escherichia coli sensor protein BasS or PmrB or b4112 SWALL:BASS_ECOLI (SWALL:P30844) (363 aa) fasta scores: E(): 9.5e-69, 58.64% id in 353 aa; sensor protein BasS/PmrB 4511594..4512688 Pectobacterium atrosepticum SCRI1043 2883304 YP_052133.1 CDS glyA NC_004547.2 4512740 4514011 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(4512740..4514011) Pectobacterium atrosepticum SCRI1043 2883306 YP_052134.1 CDS ECA4047 NC_004547.2 4514044 4514856 R Similar to Xylella fastidiosa hypothetical protein Xf1717 SWALL:Q9PCR1 (EMBL:AE003995) (266 aa) fasta scores: E(): 5.6e-63, 71% id in 238 aa, and to Pseudomonas aeruginosa hypothetical upf0001 protein Pa0394 SWALL:Y394_PSEAE (SWALL:P24562) (230 aa) fasta scores: E(): 5.9e-29, 47.34% id in 226 aa; alanine racemase complement(4514044..4514856) Pectobacterium atrosepticum SCRI1043 2883307 YP_052135.1 CDS ECA4048 NC_004547.2 4514960 4516456 D Similar to Pseudomonas aeruginosa probable transcriptional regulator pa4165 SWALL:Q9HWL6 (EMBL:AE004833) (496 aa) fasta scores: E(): 9.5e-124, 66.59% id in 500 aa, and to Salmonella typhi gntr-family regulatory protein sty3762 SWALL:Q8Z301 (EMBL:AL627279) (493 aa) fasta scores: E(): 2.7e-66, 45.43% id in 493 aa; GntR family transcriptional regulator 4514960..4516456 Pectobacterium atrosepticum SCRI1043 2883308 YP_052136.1 CDS fkpA NC_004547.2 4516657 4517475 R rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase complement(4516657..4517475) Pectobacterium atrosepticum SCRI1043 2882210 YP_052137.1 CDS slyX NC_004547.2 4517758 4517976 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 SlyX protein slyx or b3348 or c4122 or z4706 or ecs4199 SWALL:SLYX_ECOLI (SWALL:P30857) (72 aa) fasta scores: E(): 5.2e-12, 59.72% id in 72 aa, and to Yersinia pestis host factor for lysis of phix174 infection SlyX or y3976 SWALL:AAM87520 (EMBL:AE014001) (72 aa) fasta scores: E(): 1.5e-13, 63.88% id in 72 aa; hypothetical protein 4517758..4517976 Pectobacterium atrosepticum SCRI1043 2884384 YP_052138.1 CDS ECA4051 NC_004547.2 4518081 4518446 R Similar to Xanthomonas campestris hypothetical protein Xcc0062 SWALL:Q8PEB9 (EMBL:AE012100) (116 aa) fasta scores: E(): 3.8e-29, 75.47% id in 106 aa, and to Rhizobium loti hypothetical protein Mll3985 SWALL:Q98F15 (EMBL:AP003003) (137 aa) fasta scores: E(): 3.7e-28, 76.47% id in 102 aa; transcriptional regulator complement(4518081..4518446) Pectobacterium atrosepticum SCRI1043 2883111 YP_052139.1 CDS ECA4052 NC_004547.2 4518538 4518864 D Similar to Rhizobium loti hypothetical protein Mlr3986 SWALL:Q98F14 (EMBL:AP003003) (109 aa) fasta scores: E(): 1.3e-15, 47.22% id in 108 aa, and to Agrobacterium tumefaciens hypothetical protein atu5209 or agr_pat_291 SWALL:Q8UKB4 (EMBL:AE008943) (109 aa) fasta scores: E(): 1.4e-12, 40.18% id in 107 aa; hypothetical protein 4518538..4518864 Pectobacterium atrosepticum SCRI1043 2883112 YP_052140.1 CDS ECA4053 NC_004547.2 4518864 4519643 D Similar to Agrobacterium tumefaciens dehydrogenase atu5210 or agr_pat_293 SWALL:Q8UKB3 (EMBL:AE008943) (259 aa) fasta scores: E(): 9.5e-62, 65.11% id in 258 aa, and to Rhizobium meliloti sma1629 protein ra0888 or sma1629 SWALL:Q92YJ2 (EMBL:AE007275) (259 aa) fasta scores: E(): 1.4e-64, 70.86% id in 254 aa; short chain dehydrogenase 4518864..4519643 Pectobacterium atrosepticum SCRI1043 2883113 YP_052141.1 CDS slyD NC_004547.2 4519847 4520431 R rotamase; FKBP-type peptidylprolyl isomerase complement(4519847..4520431) Pectobacterium atrosepticum SCRI1043 2884383 YP_052142.1 CDS ECA4055 NC_004547.2 4520552 4520758 R Similar to Yersinia pestis hypothetical protein ypo0192 or y3973 SWALL:Q8ZJC3 (EMBL:AJ414141) (73 aa) fasta scores: E(): 1.2e-12, 60% id in 65 aa, and to Shigella flexneri orf, conserved hypothetical protein yhev or sf3368 SWALL:AAN44831 (EMBL:AE015345) (66 aa) fasta scores: E(): 4.4e-11, 50% id in 64 aa; hypothetical protein complement(4520552..4520758) Pectobacterium atrosepticum SCRI1043 2883027 YP_052143.1 CDS kefB NC_004547.2 4520816 4522627 R involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB complement(4520816..4522627) Pectobacterium atrosepticum SCRI1043 2885696 YP_052144.1 CDS ECA4057 NC_004547.2 4522629 4523180 R required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG complement(4522629..4523180) Pectobacterium atrosepticum SCRI1043 2883028 YP_052145.1 CDS ECA4058 NC_004547.2 4523306 4525213 D Similar to Salmonella typhi probable ABC transporter ATP-binding protein yhes or sty4339 SWALL:Q8Z1Y8 (EMBL:AL627281) (635 aa) fasta scores: E(): 8.5e-168, 82.2% id in 635 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein yhes or b3352 or z4713 or ecs4203 SWALL:YHES_ECOLI (SWALL:P45535) (637 aa) fasta scores: E(): 1.9e-167, 82.91% id in 632 aa; ABC transporter ATP-binding protein 4523306..4525213 Pectobacterium atrosepticum SCRI1043 2883029 YP_052146.1 CDS ECA4059 NC_004547.2 4525292 4525894 R Similar to Yersinia pestis ABC-transport protein ypo0181 SWALL:Q8ZJD2 (EMBL:AJ414141) (200 aa) fasta scores: E(): 4.2e-65, 80.5% id in 200 aa, and to Shewanella oneidensis transporter, lyse family so1716 SWALL:AAN54770 (EMBL:AE015617) (197 aa) fasta scores: E(): 9e-24, 36.73% id in 196 aa; hypothetical protein complement(4525292..4525894) Pectobacterium atrosepticum SCRI1043 2885636 YP_052147.1 CDS ECA4060 NC_004547.2 4526001 4527020 D Similar to Yersinia pestis hypothetical protein ypo0180 or y3961 SWALL:AAM87505 (EMBL:AJ414141) (326 aa) fasta scores: E(): 1.3e-103, 73.31% id in 326 aa, and to Escherichia coli O157:H7 orf, hypothetical protein yhet or z4714 or ecs4204 SWALL:Q8X873 (EMBL:AE005558) (340 aa) fasta scores: E(): 3.5e-95, 69.27% id in 319 aa; hydrolase 4526001..4527020 Pectobacterium atrosepticum SCRI1043 2885637 YP_052148.1 CDS ECA4061 NC_004547.2 4527022 4527258 D Similar to Yersinia pestis hypothetical protein ypo0179 or y3960 SWALL:AAM87504 (EMBL:AJ414141) (78 aa) fasta scores: E(): 1.1e-19, 73.97% id in 73 aa, and to Salmonella typhi hypothetical protein yheu or sty4334 SWALL:Q8Z1Z0 (EMBL:AL627281) (72 aa) fasta scores: E(): 1.2e-19, 77.14% id in 70 aa; hypothetical protein 4527022..4527258 Pectobacterium atrosepticum SCRI1043 2885638 YP_052149.1 CDS prkB NC_004547.2 4527383 4528252 D Similar to Alcaligenes eutrophus phosphoribulokinase, plasmid CfxP SWALL:KPPP_ALCEU (SWALL:P19924) (291 aa) fasta scores: E(): 6.8e-62, 56.69% id in 284 aa, and to Escherichia coli, and Shigella flexneri probable phosphoribulokinase PrkB or b3355 or sf3374 SWALL:KPPR_ECOLI (SWALL:P37307) (289 aa) fasta scores: E(): 8.9e-100, 86.15% id in 289 aa; phosphoribulokinase 4527383..4528252 Pectobacterium atrosepticum SCRI1043 2882327 YP_052150.1 CDS ECA4063 NC_004547.2 4528356 4528763 R Similar to Yersinia pestis hypothetical protein ypo0176 or y3957 SWALL:AAM87501 (EMBL:AJ414141) (135 aa) fasta scores: E(): 1.9e-46, 89.39% id in 132 aa, and to Erwinia chrysanthemi orf2 protein SWALL:O07095 (EMBL:X89443) (135 aa) fasta scores: E(): 1.3e-45, 89.31% id in 131 aa; hypothetical protein complement(4528356..4528763) Pectobacterium atrosepticum SCRI1043 2885639 YP_052151.1 CDS crp NC_004547.2 4529138 4529770 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 4529138..4529770 Pectobacterium atrosepticum SCRI1043 2884943 YP_052152.1 CDS argD NC_004547.2 4529898 4531124 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(4529898..4531124) Pectobacterium atrosepticum SCRI1043 2884140 YP_052153.1 CDS ECA4066 NC_004547.2 4531245 4531820 R aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II complement(4531245..4531820) Pectobacterium atrosepticum SCRI1043 2885651 YP_052154.1 CDS pelA NC_004547.2 4532512 4533636 D Similar to Erwinia carotovora pectate lyase I precursor Pel1 or PelA SWALL:PEL1_ERWCA (SWALL:P11430) (374 aa) fasta scores: E(): 1.3e-143, 97.05% id in 374 aa, and to Erwinia carotovora pectate lyase II precursor pel2 or pelB SWALL:PEL2_ERWCA (SWALL:P11431) (374 aa) fasta scores: E(): 8.6e-136, 90.1% id in 374 aa. Also similar to ECA4068 (88.503% id. in 374 aa overlap), and to ECA4069 (83.110% id. in 373 aa overlap); pectate lyase I 4532512..4533636 Pectobacterium atrosepticum SCRI1043 2885350 YP_052155.1 CDS pelB NC_004547.2 4534304 4535428 D Similar to Erwinia carotovora pectate lyase II precursor Pel2 or PelB SWALL:PEL2_ERWCA (SWALL:P11431) (374 aa) fasta scores: E(): 3.8e-143, 94.11% id in 374 aa, and to Erwinia chrysanthemi pectate lyase B precursor PelB SWALL:PELB_ERWCH (SWALL:P04959) (375 aa) fasta scores: E(): 2.8e-112, 73.06% id in 375 aa. Also similar to ECA4067 (88.503% id. in 374 aa overlap), and to ECA4069 (82% id. in 373 aa overlap); pectate lyase II 4534304..4535428 Pectobacterium atrosepticum SCRI1043 2885351 YP_052156.1 CDS pelC NC_004547.2 4536014 4537138 D Similar to Erwinia carotovora pectate lyase III precursor Pel3 or PelC or PelcI SWALL:PEL3_ERWCA (SWALL:P29171) (374 aa) fasta scores: E(): 1.1e-143, 95.72% id in 374 aa. Also similar to ECA4067 (83.110% id. in 374 aa overlap), and to ECA4068 (82.038% id. in 373 aa overlap); pectate lyase III 4536014..4537138 Pectobacterium atrosepticum SCRI1043 2885604 YP_052157.1 CDS pelZ NC_004547.2 4537307 4538584 D Similar to Erwinia chrysanthemi pectate lyase precursor PelZ SWALL:P94773 (EMBL:X97119) (420 aa) fasta scores: E(): 5.1e-120, 72.53% id in 426 aa; pectate lyase 4537307..4538584 Pectobacterium atrosepticum SCRI1043 2884511 YP_052158.1 CDS ppiA NC_004547.2 4538833 4539402 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 peptidyl-prolyl cis-trans isomerase A precursor PpiA or RotA or Rot or b3363 or c4138 or z4724 or ecs4214 SWALL:PPIA_ECOLI (SWALL:P20752) (190 aa) fasta scores: E(): 2.1e-57, 79.47% id in 190 aa; peptidyl-prolyl cis-trans isomerase A complement(4538833..4539402) Pectobacterium atrosepticum SCRI1043 2882816 YP_052159.1 CDS ECA4072 NC_004547.2 4539705 4540514 R Similar to Rhizobium meliloti dipeptide transport ATP-binding ABC transporter protein dppf2 or r02409 or smc01529 SWALL:Q92N30 (EMBL:AL591790) (255 aa) fasta scores: E(): 4.6e-46, 53.93% id in 254 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3456 or agr_l_2744 SWALL:Q8UAB8 (EMBL:AE009276) (259 aa) fasta scores: E(): 4e-46, 53.06% id in 245 aa; ABC transporter ATP-binding protein complement(4539705..4540514) Pectobacterium atrosepticum SCRI1043 2885652 YP_052160.1 CDS ECA4073 NC_004547.2 4540526 4541350 R Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3457 or agr_l_2743 SWALL:Q8UAB7 (EMBL:AE009276) (278 aa) fasta scores: E(): 6.5e-62, 65.07% id in 272 aa, and to Rhizobium meliloti dipeptide transport ATP-binding ABC transporter protein dppd2 or r02410 or smc01528 SWALL:Q92N29 (EMBL:AL591790) (277 aa) fasta scores: E(): 3e-58, 61.99% id in 271 aa; ABC transporter ATP-binding protein complement(4540526..4541350) Pectobacterium atrosepticum SCRI1043 2885653 YP_052161.1 CDS ECA4074 NC_004547.2 4541385 4542308 R Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3458 or agr_l_2741 SWALL:Q8UAB6 (EMBL:AE009276) (295 aa) fasta scores: E(): 5.9e-75, 64.18% id in 282 aa, and to Rhizobium meliloti dipeptide transport system permease ABC transporter protein dppc2 or r02411 or smc01527 SWALL:Q92N28 (EMBL:AL591790) (310 aa) fasta scores: E(): 4.7e-66, 54.8% id in 312 aa; ABC transporter permease complement(4541385..4542308) Pectobacterium atrosepticum SCRI1043 2885672 YP_052162.1 CDS ECA4075 NC_004547.2 4542305 4543345 R Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3459 or agr_l_2740 SWALL:Q8UAB5 (EMBL:AE009276) (360 aa) fasta scores: E(): 2.4e-83, 63.15% id in 342 aa, and to Rhizobium meliloti dipeptide transport system permease ABC transporter protein dppb2 or r02412 or smc01526 SWALL:Q92N27 (EMBL:AL591790) (347 aa) fasta scores: E(): 1.7e-70, 56.4% id in 328 aa; ABC transporter permease complement(4542305..4543345) Pectobacterium atrosepticum SCRI1043 2885673 YP_052163.1 CDS ECA4076 NC_004547.2 4543476 4545089 R Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3455 or agr_l_2748 SWALL:Q8UAB9 (EMBL:AE009275) (549 aa) fasta scores: E(): 1.1e-105, 50.65% id in 535 aa, and to Rhizobium meliloti dipeptide binding periplasmic protein dppa2 or r02413 or smc01525 SWALL:Q92N26 (EMBL:AL591790) (546 aa) fasta scores: E(): 2.5e-43, 38.6% id in 531 aa; ABC transporter substrate binding protein complement(4543476..4545089) Pectobacterium atrosepticum SCRI1043 2885674 YP_052164.1 CDS ECA4077 NC_004547.2 4545169 4546323 R Similar to Agrobacterium tumefaciens isomerase/lactonizing enzyme atu3453 or agr_l_2751 SWALL:Q8UAC1 (EMBL:AE009275) (407 aa) fasta scores: E(): 1.1e-110, 65.17% id in 379 aa, and to Sulfolobus tokodaii dgoa protein st2366 SWALL:Q96Y01 (EMBL:AP000989) (396 aa) fasta scores: E(): 2.9e-21, 27.64% id in 369 aa; mandelate racemase/muconate lactonizing protein complement(4545169..4546323) Pectobacterium atrosepticum SCRI1043 2885675 YP_052165.1 CDS ECA4078 NC_004547.2 4546707 4546904 D hypothetical protein 4546707..4546904 Pectobacterium atrosepticum SCRI1043 2882615 YP_052166.1 CDS nirB NC_004547.2 4546959 4549529 D Similar to Escherichia coli nitrite reductase [NAD(P)H] large subunit NirB or b3365 SWALL:NIRB_ECOLI (SWALL:P08201) (847 aa) fasta scores: E(): 0, 80.45% id in 844 aa; nitrite reductase [NAD(P)H] large subunit 4546959..4549529 Pectobacterium atrosepticum SCRI1043 2881752 YP_052167.1 CDS nirD NC_004547.2 4549526 4549894 D involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 4549526..4549894 Pectobacterium atrosepticum SCRI1043 2881281 YP_052168.1 CDS cysG NC_004547.2 4549962 4551341 D multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; siroheme synthase 4549962..4551341 Pectobacterium atrosepticum SCRI1043 2882115 YP_052169.1 CDS occQ NC_004547.2 4551834 4552562 D Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine transport system permease protein OccQ SWALL:OCCQ_AGRTU (SWALL:P35119) (237 aa) fasta scores: E(): 3e-44, 51.94% id in 231 aa, and to Rhizobium meliloti octopine transport system permease protein OccQ SWALL:OCCQ_RHIME (SWALL:P72295) (237 aa) fasta scores: E(): 9.3e-43, 50.64% id in 233 aa; octopine transport system permease 4551834..4552562 Pectobacterium atrosepticum SCRI1043 2883613 YP_052170.1 CDS occM NC_004547.2 4552562 4553296 D Similar to Agrobacterium tumefaciens octopine transport system permease protein OccM SWALL:OCM2_AGRTU (SWALL:P35115) (245 aa) fasta scores: E(): 1e-50, 60.44% id in 225 aa, and to Rhizobium meliloti octopine transport system permease protein OccM occM SWALL:OCCM_RHIME (SWALL:P72296) (245 aa) fasta scores: E(): 1.2e-50, 60.81% id in 222 aa; octopine transport system permease 4552562..4553296 Pectobacterium atrosepticum SCRI1043 2883611 YP_052171.1 CDS occP NC_004547.2 4553293 4554057 D Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine permease ATP-binding protein P OccP SWALL:OCCP_AGRTU (SWALL:P35117) (262 aa) fasta scores: E(): 4.5e-56, 63.85% id in 249 aa; octopine permease ATP-binding protein P 4553293..4554057 Pectobacterium atrosepticum SCRI1043 2883612 YP_052172.1 CDS occJ NC_004547.2 4554284 4555153 D Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine-binding periplasmic protein precursor OccT or OccJ SWALL:OCCT_AGRTU (SWALL:P35121) (276 aa) fasta scores: E(): 1.3e-38, 46.01% id in 276 aa, and to Rhizobium meliloti octopine-binding periplasmic protein precursor OccT SWALL:OCCT_RHIME (SWALL:P72298) (294 aa) fasta scores: E(): 5.7e-33, 43.34% id in 293 aa; octopine-binding periplasmic protein 4554284..4555153 Pectobacterium atrosepticum SCRI1043 2883754 YP_052173.1 CDS abgB NC_004547.2 4555196 4556704 D Similar to Escherichia coli aminobenzoyl-glutamate utilization protein B AbgB or b1337 SWALL:ABGB_ECOLI (SWALL:P76052) (481 aa) fasta scores: E(): 3.5e-63, 47.23% id in 470 aa; aminobenzoyl-glutamate utilization protein B 4555196..4556704 Pectobacterium atrosepticum SCRI1043 2885152 YP_052174.1 CDS trpS NC_004547.2 4556779 4557783 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(4556779..4557783) Pectobacterium atrosepticum SCRI1043 2884232 YP_052175.1 CDS gph NC_004547.2 4557780 4558484 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(4557780..4558484) Pectobacterium atrosepticum SCRI1043 2885365 YP_052176.1 CDS rpe NC_004547.2 4558477 4559154 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribulose-phosphate 3-epimerase Rpe or Dod or b3386 or c4156 or z4739 or ecs4228 or sf3404 SWALL:RPE_ECOLI (SWALL:P32661) (225 aa) fasta scores: E(): 5.1e-71, 83.92% id in 224 aa; ribulose-phosphate 3-epimerase complement(4558477..4559154) Pectobacterium atrosepticum SCRI1043 2885026 YP_052177.1 CDS dam NC_004547.2 4559278 4560090 R Similar to Escherichia coli, and Escherichia coli O157:H7 DNA adenine methylase Dam or b3387 or z4740 or ecs4229 SWALL:DMA_ECOLI (SWALL:P00475) (278 aa) fasta scores: E(): 2.7e-78, 70% id in 270 aa; DNA adenine methylase complement(4559278..4560090) Pectobacterium atrosepticum SCRI1043 2882628 YP_052178.1 CDS damX NC_004547.2 4560170 4561186 R Similar to Escherichia coli DamX protein DamX or b3388 SWALL:DAMX_ECOLI (SWALL:P11557) (427 aa) fasta scores: E(): 4.4e-14, 40.15% id in 381 aa; hypothetical protein complement(4560170..4561186) Pectobacterium atrosepticum SCRI1043 2882629 YP_052179.1 CDS aroB NC_004547.2 4561336 4562421 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(4561336..4562421) Pectobacterium atrosepticum SCRI1043 2884132 YP_052180.1 CDS aroK NC_004547.2 4562473 4562994 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(4562473..4562994) Pectobacterium atrosepticum SCRI1043 2884126 YP_052181.2 CDS hofQ NC_004547.2 4563346 4564497 R outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; outer membrane porin HofQ complement(4563346..4564497) Pectobacterium atrosepticum SCRI1043 2882075 YP_052182.1 CDS ECA4095 NC_004547.2 4564710 4565087 R Similar to Yersinia pestis membrane protein ypo0149 SWALL:Q8ZJF9 (EMBL:AJ414141) (122 aa) fasta scores: E(): 0.013, 29.41% id in 85 aa; hypothetical protein complement(4564710..4565087) Pectobacterium atrosepticum SCRI1043 2882616 YP_052183.1 CDS ECA4096 NC_004547.2 4565084 4565671 R Similar to Yersinia pestis hypothetical y3928 SWALL:AAM87472 (EMBL:AE013997) (208 aa) fasta scores: E(): 5, 23.78% id in 185 aa; hypothetical protein complement(4565084..4565671) Pectobacterium atrosepticum SCRI1043 2882617 YP_052184.1 CDS ECA4097 NC_004547.2 4565664 4566233 R Similar to Yersinia pestis membrane protein ypo0147 SWALL:Q8ZJG1 (EMBL:AJ414141) (201 aa) fasta scores: E(): 7e-07, 25.77% id in 194 aa, and to Salmonella typhi membrane protein yrfc or sty4305 SWALL:Q8Z209 (EMBL:AL627281) (179 aa) fasta scores: E(): 6.7e-05, 29.25% id in 147 aa; hypothetical protein complement(4565664..4566233) Pectobacterium atrosepticum SCRI1043 2884048 YP_052185.1 CDS ECA4098 NC_004547.2 4566236 4567087 R Similar to Yersinia pestis hypothetical protein ypo0146 or y3925 SWALL:Q8ZJG2 (EMBL:AJ414141) (313 aa) fasta scores: E(): 7.5e-48, 45.54% id in 292 aa, and to Salmonella typhi hypothetical protein yrfd or t4014 SWALL:AAO71484 (EMBL:AE016847) (259 aa) fasta scores: E(): 8.5e-14, 29.74% id in 279 aa; hypothetical protein complement(4566236..4567087) Pectobacterium atrosepticum SCRI1043 2884049 YP_052186.1 CDS mrcA NC_004547.2 4567199 4569754 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 4567199..4569754 Pectobacterium atrosepticum SCRI1043 2881749 YP_052187.1 CDS nudE NC_004547.2 4569837 4570394 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(4569837..4570394) Pectobacterium atrosepticum SCRI1043 2884618 YP_052188.1 CDS ECA4101 NC_004547.2 4570411 4570593 R Similar to Yersinia pestis hypothetical protein Ypo0143 SWALL:Q8ZJG5 (EMBL:AJ414141) (64 aa) fasta scores: E(): 0.17, 36.17% id in 47 aa; hypothetical protein complement(4570411..4570593) Pectobacterium atrosepticum SCRI1043 2884050 YP_052189.1 CDS igaA NC_004547.2 4570831 4572978 D Similar to Salmonella typhimurium intracellular growth attenuator protein IgaA or stm3495 SWALL:IGAA_SALTY (SWALL:Q9ACP0) (710 aa) fasta scores: E(): 2.3e-132, 50.14% id in 716 aa, and to Proteus mirabilis flagellar operon control protein UmoB SWALL:UMOB_PROMI (SWALL:O86988) (702 aa) fasta scores: E(): 1.8e-100, 40.11% id in 698 aa; intracellular growth attenuator protein 4570831..4572978 Pectobacterium atrosepticum SCRI1043 2882328 YP_052190.1 CDS ECA4103 NC_004547.2 4573107 4573793 D Similar to Yersinia pestis hypothetical protein ypo0141 or y3921 SWALL:AAM87465 (EMBL:AJ414141) (226 aa) fasta scores: E(): 4.7e-69, 76.57% id in 222 aa, and to Salmonella typhi hydrolase yrfg or sty4300 SWALL:Q8Z212 (EMBL:AL627281) (236 aa) fasta scores: E(): 7.2e-59, 65.31% id in 222 aa; hydrolase 4573107..4573793 Pectobacterium atrosepticum SCRI1043 2884018 YP_052191.1 CDS hslR NC_004547.2 4573911 4574321 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 heat shock protein 15 HslR or b3400 or c4171 or z4754 or ecs4242 SWALL:HSLR_ECOLI (SWALL:P45802) (133 aa) fasta scores: E(): 2.3e-36, 77.59% id in 125 aa; heat shock protein 4573911..4574321 Pectobacterium atrosepticum SCRI1043 2884052 YP_052192.1 CDS hslO NC_004547.2 4574406 4575275 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 4574406..4575275 Pectobacterium atrosepticum SCRI1043 2884051 YP_052193.1 CDS pckA NC_004547.2 4575473 4577092 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 4575473..4577092 Pectobacterium atrosepticum SCRI1043 2881430 YP_052194.1 CDS envZ NC_004547.2 4577365 4578723 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(4577365..4578723) Pectobacterium atrosepticum SCRI1043 2884533 YP_052195.1 CDS ompR NC_004547.2 4578723 4579442 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(4578723..4579442) Pectobacterium atrosepticum SCRI1043 2883330 YP_052196.1 CDS ECA4109 NC_004547.2 4579774 4580184 R Similar to Rhizobium fredii Y4yB SWALL:Q9EUG6 (EMBL:AF229441) (142 aa) fasta scores: E(): 8.8e-12, 38.58% id in 127 aa, and to Ralstonia solanacearum hypothetical protein rsp0413 or rs00870 SWALL:Q8XSQ4 (EMBL:AL646078) (146 aa) fasta scores: E(): 3.2e-29, 55.97% id in 134 aa; hypothetical protein complement(4579774..4580184) Pectobacterium atrosepticum SCRI1043 2884019 YP_052197.1 CDS ECA4110 NC_004547.2 4580247 4581398 R Similar to Yersinia pestis periplasmic substrate-binding transport protein ypo1310 SWALL:Q8ZGI7 (EMBL:AJ414147) (381 aa) fasta scores: E(): 3.8e-43, 34.91% id in 358 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3391 or agr_l_2862 SWALL:Q8UAI2 (EMBL:AE009269) (377 aa) fasta scores: E(): 3.1e-81, 52.18% id in 366 aa; periplasmic substrate-binding protein complement(4580247..4581398) Pectobacterium atrosepticum SCRI1043 2884020 YP_052198.1 CDS ECA4111 NC_004547.2 4581391 4582641 R Similar to Rhizobium fredii Y4xM SWALL:Q8RQC1 (EMBL:AF229441) (404 aa) fasta scores: E(): 8.6e-66, 49.87% id in 389 aa, and to Rhizobium sp. hypothetical transport protein y4xM SWALL:Y4XM_RHISN (SWALL:P55705) (404 aa) fasta scores: E(): 1.9e-66, 49.74% id in 392 aa; transporter complement(4581391..4582641) Pectobacterium atrosepticum SCRI1043 2884021 YP_052199.1 CDS ECA4112 NC_004547.2 4582715 4583872 R Similar to Arthrobacter sp. opine dehydrogenase Odh SWALL:ODH_ARTSP (SWALL:Q44297) (359 aa) fasta scores: E(): 0.53, 26.42% id in 352 aa, and to Rhizobium fredii Y4xO SWALL:Q8RQB9 (EMBL:AF229441) (406 aa) fasta scores: E(): 2.7e-78, 54.83% id in 372 aa, and to Haliotis discus hannai tauropine dehydrogenase TadH SWALL:Q8N0N9 (EMBL:AB085184) (405 aa) fasta scores: E(): 6.1e-16, 24.33% id in 374 aa, and to Pecten maximus octopine dehydrogenase Odh1 SWALL:Q9BHM6 (EMBL:AJ237916) (399 aa) fasta scores: E(): 1.3e-12, 24.39% id in 369 aa; octopine/opine/tauropine dehydrogenase complement(4582715..4583872) Pectobacterium atrosepticum SCRI1043 2883960 YP_052200.1 CDS ECA4113 NC_004547.2 4583883 4584899 R Similar to Streptomyces venezuelae cystathionine beta-synthase cbssV SWALL:Q9EYM7 (EMBL:AF319543) (463 aa) fasta scores: E(): 1.5e-28, 36.81% id in 326 aa, and to Rhizobium fredii Y4xP SWALL:Q8RQB8 (EMBL:AF229441) (336 aa) fasta scores: E(): 1.6e-81, 69.06% id in 333 aa; cystathionine beta-synthase complement(4583883..4584899) Pectobacterium atrosepticum SCRI1043 2883961 YP_052201.1 CDS ECA4114 NC_004547.2 4584913 4586316 R Similar to Selenomonas ruminantium lysine/ornithine decarboxylase Ldc SWALL:DCLO_SELRU (SWALL:O50657) (393 aa) fasta scores: E(): 4.2e-06, 26.53% id in 245 aa, and to Rhizobium fredii Y4yA SWALL:Q9EUG5 (EMBL:AF229441) (450 aa) fasta scores: E(): 6.6e-73, 49.08% id in 438 aa; lysine/ornithine decarboxylase complement(4584913..4586316) Pectobacterium atrosepticum SCRI1043 2883962 YP_052202.1 CDS ECA4115 NC_004547.2 4586358 4588553 R Similar to Ralstonia solanacearum probable ferric siderophore receptor protein rsp0414 or rs00871 SWALL:Q8XSQ3 (EMBL:AL646078) (746 aa) fasta scores: E(): 2.3e-136, 51.09% id in 734 aa, and to Vibrio anguillarum ferric anguibactin receptor precursor fatA SWALL:FATA_VIBAN (SWALL:P11461) (726 aa) fasta scores: E(): 3.5e-79, 35.45% id in 722 aa; TonB-dependent siderophore receptor complement(4586358..4588553) Pectobacterium atrosepticum SCRI1043 2883880 YP_052203.1 CDS ECA4116 NC_004547.2 4588636 4590537 R Similar to Escherichia coli aerobactin siderophore biosynthesis protein IucC SWALL:IUCC_ECOLI (SWALL:Q47318) (580 aa) fasta scores: E(): 9.5e-19, 29.59% id in 321 aa, and to Legionella pneumophila FrgA SWALL:P94901 (EMBL:U76559) (575 aa) fasta scores: E(): 2.6e-18, 23.43% id in 542 aa; siderophore biosynthesis protein complement(4588636..4590537) Pectobacterium atrosepticum SCRI1043 2883881 YP_052204.1 CDS ECA4117 NC_004547.2 4590788 4591669 D Similar to Klebsiella pneumoniae citrate lyase beta chain CitE SWALL:CILB_KLEPN (SWALL:P17725) (289 aa) fasta scores: E(): 4.4e-11, 30.13% id in 302 aa, and to Brucella melitensis citrate lyase beta chain bmeii1074 SWALL:Q8YB27 (EMBL:AE009739) (274 aa) fasta scores: E(): 1.3e-22, 40.71% id in 280 aa; citrate lyase subunit beta 4590788..4591669 Pectobacterium atrosepticum SCRI1043 2883882 YP_052205.1 CDS greB NC_004547.2 4591738 4592217 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB complement(4591738..4592217) Pectobacterium atrosepticum SCRI1043 2885717 YP_052206.1 CDS ECA4119 NC_004547.2 4592392 4594107 D Similar to Shewanella oneidensis acyltransferase family protein so1238 SWALL:AAN54306 (EMBL:AE015568) (619 aa) fasta scores: E(): 3.1e-116, 48.86% id in 571 aa, and to Vibrio cholerae conserved hypothetical protein/hemolysin, vca0646 SWALL:Q9KLU5 (EMBL:AE004394) (605 aa) fasta scores: E(): 3.4e-53, 32.84% id in 551 aa; acyltransferase 4592392..4594107 Pectobacterium atrosepticum SCRI1043 2883883 YP_052207.1 CDS ECA4120 NC_004547.2 4594503 4596164 D Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 5.6e-48, 37.8% id in 574 aa, and to Rahnella aquatilis methyl-accepting chemotaxis protein i SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 5.9e-58, 39.64% id in 560 aa; methyl-accepting chemotaxis protein 4594503..4596164 Pectobacterium atrosepticum SCRI1043 2883834 YP_052208.1 CDS ECA4121 NC_004547.2 4596258 4597541 R Similar to Escherichia coli, and Escherichia coli O6 citrate synthase GltA or GluT or IcdB or b0720 or c0796 SWALL:CISY_ECOLI (SWALL:P00891) (427 aa) fasta scores: E(): 2e-119, 63.91% id in 424 aa; citrate synthase complement(4596258..4597541) Pectobacterium atrosepticum SCRI1043 2883835 YP_052209.1 CDS tex NC_004547.2 4597892 4600225 D Similar to Bordetella pertussis Tex protein WALL:TEX_BORPE (SWALL:Q45388) (791 aa) fasta scores: E(): 1.7e-165, 60.15% id in 783 aa, and to Salmonella typhi transcription accessory protein sty4292 SWALL:Q8Z218 (EMBL:AL627281) (776 aa) fasta scores: E(): 0, 83.67% id in 778 aa; RNA binding protein 4597892..4600225 Pectobacterium atrosepticum SCRI1043 2884306 YP_052210.1 CDS rexZ NC_004547.2 4600454 4601242 D Similar to Pectobacterium carotovorum subsp. carotovorum RexZ SWALL:Q9RB26 (EMBL:AF135394) (262 aa) fasta scores: E(): 9.6e-102, 96.56% id in 262 aa; regulator of exoenzyme 4600454..4601242 Pectobacterium atrosepticum SCRI1043 2885253 YP_052211.1 CDS kdgT NC_004547.2 4601730 4602686 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 4601730..4602686 Pectobacterium atrosepticum SCRI1043 2884867 YP_052212.1 CDS kduI2 NC_004547.2 4602698 4603534 D 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 4602698..4603534 Pectobacterium atrosepticum SCRI1043 2885695 YP_052213.1 CDS ansB2 NC_004547.2 4603858 4604907 D Similar to Escherichia coli L-asparaginase II precursor AnsB or b2957 SWALL:ASG2_ECOLI (SWALL:P00805) (348 aa) fasta scores: E(): 3.5e-42, 43.5% id in 354 aa, and to Erwinia chrysanthemi L-asparaginase precursor AnsB or Asn SWALL:ASPG_ERWCH (SWALL:P06608) (348 aa) fasta scores: E(): 9.6e-55, 54.26% id in 328 aa; L-asparaginase II 4603858..4604907 Pectobacterium atrosepticum SCRI1043 2884173 YP_052214.1 CDS ECA4127 NC_004547.2 4605050 4606333 R Similar to Pseudomonas putida ABC efflux transporter, permease protein, pp0506 SWALL:AAN66134 (EMBL:AE016775) (421 aa) fasta scores: E(): 3.1e-13, 30.02% id in 423 aa, and to Vibrio cholerae hypothetical protein Vc2554 SWALL:Q9KP25 (EMBL:AE004324) (421 aa) fasta scores: E(): 2.7e-10, 27.86% id in 427 aa; permease complement(4605050..4606333) Pectobacterium atrosepticum SCRI1043 2883836 YP_052215.1 CDS ECA4128 NC_004547.2 4606330 4607022 R Similar to Pseudomonas putida ABC transporter, ATP-binding protein, pp2317 SWALL:AAN67930 (EMBL:AE016782) (228 aa) fasta scores: E(): 5.5e-24, 42.85% id in 224 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical ABC transporter ATP-binding protein ybba or b0495 or z0648 or ecs0557 or sf0439 SWALL:AAN42094 (EMBL:AE000155) (228 aa) fasta scores: E(): 3.7e-24, 44.09% id in 220 aa; ABC transporter ATP-binding protein complement(4606330..4607022) Pectobacterium atrosepticum SCRI1043 2883694 YP_052216.1 CDS ECA4129 NC_004547.2 4607031 4607510 R Similar to Deinococcus radiodurans hypothetical protein Drb0048 SWALL:Q9RZR7 (EMBL:AE001826) (152 aa) fasta scores: E(): 9.8e-20, 48.36% id in 122 aa; hypothetical protein complement(4607031..4607510) Pectobacterium atrosepticum SCRI1043 2883695 YP_052217.1 CDS ECA4130 NC_004547.2 4607523 4609268 R Similar to Schizophyllum commune alkaline phosphatase Pho1 SWALL:Q9UR10 (EMBL:AF209194) (604 aa) fasta scores: E(): 5.3e-20, 32.91% id in 477 aa, and to Schizosaccharomyces pombe alkaline phosphatase spbc14f5.13C SWALL:PPB_SCHPO (SWALL:O60109) (532 aa) fasta scores: E(): 8.8e-15, 26.68% id in 491 aa; alkaline phosphatase complement(4607523..4609268) Pectobacterium atrosepticum SCRI1043 2883696 YP_052218.1 CDS acrD NC_004547.2 4609363 4612485 R Similar to Escherichia coli probable aminoglycoside efflux pump AcrD or b2470 SWALL:ACRD_ECOLI (SWALL:P24177) (1037 aa) fasta scores: E(): 0, 79.51% id in 1035 aa, and to Escherichia coli acriflavine resistance protein B AcrB or AcrE or b0462 SWALL:ACRB_ECOLI (SWALL:P31224) (1049 aa) fasta scores: E(): 0, 64.87% id in 1042 aa; aminoglycoside/multidrug efflux system complement(4609363..4612485) Pectobacterium atrosepticum SCRI1043 2884693 YP_052219.1 CDS bioH NC_004547.2 4612669 4613436 R Similar to Escherichia coli BioH protein BioH or BioB or b3412 SWALL:BIOH_ECOLI (SWALL:P13001) (256 aa) fasta scores: E(): 1.2e-69, 69.29% id in 254 aa, and to Serratia marcescens hydrolase BioH SWALL:BAC53660 (EMBL:AB089611) (255 aa) fasta scores: E(): 1.9e-71, 74.11% id in 255 aa; biotin biosynthesis protein complement(4612669..4613436) Pectobacterium atrosepticum SCRI1043 2882500 YP_052220.1 CDS ECA4133 NC_004547.2 4613483 4614184 D involved in high-affinity gluconate transport; gluconate periplasmic-binding protein 4613483..4614184 Pectobacterium atrosepticum SCRI1043 2883674 YP_052221.1 CDS ECA4134 NC_004547.2 4614245 4614820 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 4614245..4614820 Pectobacterium atrosepticum SCRI1043 2883675 YP_052222.1 CDS malQ NC_004547.2 4614891 4616966 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(4614891..4616966) Pectobacterium atrosepticum SCRI1043 2881335 YP_052223.1 CDS malP NC_004547.2 4616988 4619510 R Similar to Escherichia coli maltodextrin phosphorylase MalP or b3417 SWALL:PHSM_ECOLI (SWALL:P00490) (796 aa) fasta scores: E(): 2.1e-214, 66.91% id in 801 aa; maltodextrin phosphorylase complement(4616988..4619510) Pectobacterium atrosepticum SCRI1043 2881943 YP_052224.1 CDS glpR NC_004547.2 4619553 4620311 R represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR complement(4619553..4620311) Pectobacterium atrosepticum SCRI1043 2881895 YP_052225.1 CDS glpG NC_004547.2 4620336 4621169 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG complement(4620336..4621169) Pectobacterium atrosepticum SCRI1043 2881388 YP_052226.1 CDS glpE NC_004547.2 4621244 4621561 R Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri thiosulfate sulfurtransferase GlpE or b3425 or c4202 or sf3447 SWALL:GLPE_ECOLI (SWALL:P09390) (108 aa) fasta scores: E(): 8e-23, 61.16% id in 103 aa; thiosulfate sulfurtransferase complement(4621244..4621561) Pectobacterium atrosepticum SCRI1043 2881264 YP_052227.1 CDS ECA4140 NC_004547.2 4621743 4622156 D Similar to Xenorhabdus nematophilus glyoxalase GloA SWALL:Q8RLU7 (EMBL:AY077466) (132 aa) fasta scores: E(): 3.7e-36, 74.26% id in 136 aa, and to Clostridium acetobutylicum predicted aldoketomutase of glyoxalase i family cac2466 SWALL:Q97GA3 (EMBL:AE007746) (132 aa) fasta scores: E(): 5.2e-18, 46.66% id in 135 aa; glyoxalase 4621743..4622156 Pectobacterium atrosepticum SCRI1043 2883676 YP_052228.1 CDS glpD NC_004547.2 4622349 4623851 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 4622349..4623851 Pectobacterium atrosepticum SCRI1043 2881263 YP_052229.1 CDS ECA4142 NC_004547.2 4624416 4626443 D Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 1.5e-106, 47.15% id in 615 aa, and to Vibrio cholerae VgrG protein vc1416 SWALL:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 4.8e-124, 51.84% id in 652 aa; RHS accessory genetic element 4624416..4626443 Pectobacterium atrosepticum SCRI1043 2883677 YP_052230.1 CDS ECA4143 NC_004547.2 4626445 4627170 D Similar to Pseudomonas aeruginosa hypothetical protein Pa3293 SWALL:Q9HYV0 (EMBL:AE004751) (271 aa) fasta scores: E(): 1.8, 25.9% id in 220 aa; hypothetical protein 4626445..4627170 Pectobacterium atrosepticum SCRI1043 2883648 YP_052231.1 CDS ECA4144 NC_004547.2 4627167 4627685 D Similar to Pseudomonas resinovorans hypothetical protein SWALL:BAC41541 (EMBL:AB088420) (170 aa) fasta scores: E(): 3.6, 25.17% id in 143 aa, and to Pseudomonas sp. CA10 hypothetical 18.9 kDa protein SWALL:Q9AQM6 (EMBL:AB047548) (170 aa) fasta scores: E(): 3.6, 25.17% id in 143 aa; hypothetical protein 4627167..4627685 Pectobacterium atrosepticum SCRI1043 2883649 YP_052232.1 CDS ECA4145 NC_004547.2 4627807 4628325 D Similar to Pseudomonas sp. CA10 hypothetical 18.9 kDa protein SWALL:Q9AQM6 (EMBL:AB047548) (170 aa) fasta scores: E(): 5.5, 26.02% id in 146 aa; hypothetical protein 4627807..4628325 Pectobacterium atrosepticum SCRI1043 2883650 YP_052233.1 CDS ECA4146 NC_004547.2 4628325 4630040 D Similar to Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 0.0057, 25.85% id in 410 aa; hypothetical protein 4628325..4630040 Pectobacterium atrosepticum SCRI1043 2883578 YP_052234.1 CDS glgP NC_004547.2 4630295 4632742 R Similar to Escherichia coli, and Shigella flexneri glycogen phosphorylase GlgP or GlgY or b3428 or sf3451 SWALL:PHSG_ECOLI (SWALL:P13031) (815 aa) fasta scores: E(): 0, 77.91% id in 815 aa; glycogen phosphorylase complement(4630295..4632742) Pectobacterium atrosepticum SCRI1043 2881719 YP_052235.1 CDS glgA NC_004547.2 4632818 4634257 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(4632818..4634257) Pectobacterium atrosepticum SCRI1043 2882435 YP_052236.1 CDS glgC NC_004547.2 4634286 4635563 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(4634286..4635563) Pectobacterium atrosepticum SCRI1043 2881718 YP_052237.1 CDS glgX NC_004547.2 4635600 4637576 R catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching protein complement(4635600..4637576) Pectobacterium atrosepticum SCRI1043 2881720 YP_052238.1 CDS glgB NC_004547.2 4637577 4639754 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(4637577..4639754) Pectobacterium atrosepticum SCRI1043 2882436 YP_052239.1 CDS ECA4152 NC_004547.2 4640126 4641844 D Similar to Yersinia pestis membrane protein ypo3943 or y3885 SWALL:Q8ZA74 (EMBL:AJ414159) (565 aa) fasta scores: E(): 5.9e-173, 82.11% id in 559 aa, and to Shigella flexneri 2a str. 2457T 2-component sensor protein yehu or s2325 SWALL:AAP17542 (EMBL:AE016985) (561 aa) fasta scores: E(): 8e-149, 68.84% id in 552 aa; two-component system sensor kinase 4640126..4641844 Pectobacterium atrosepticum SCRI1043 2883579 YP_052240.1 CDS ECA4153 NC_004547.2 4641917 4643185 R Similar to Erwinia amylovora hypothetical 47.8 kDa protein SWALL:Q9F814 (EMBL:AF264948) (427 aa) fasta scores: E(): 1.7e-30, 36.53% id in 364 aa, and to Caulobacter crescentus hypothetical protein Cc2770 SWALL:Q9A4R0 (EMBL:AE005942) (435 aa) fasta scores: E(): 2.8e-12, 31.42% id in 366 aa; hypothetical protein complement(4641917..4643185) Pectobacterium atrosepticum SCRI1043 2883580 YP_052241.1 CDS ECA4154 NC_004547.2 4643175 4643495 R Similar to Salmonella typhimurium transcriptional regulator stm2195 SWALL:Q8ZNL4 (EMBL:AE008798) (129 aa) fasta scores: E(): 0.00035, 26.92% id in 104 aa, and to Vibrio vulnificus conserved hypothetical protein vv12191 SWALL:AAO10575 (EMBL:AE016804) (107 aa) fasta scores: E(): 0.023, 32.96% id in 91 aa; transcriptional regulator complement(4643175..4643495) Pectobacterium atrosepticum SCRI1043 2883581 YP_052242.1 CDS asd NC_004547.2 4643741 4644844 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(4643741..4644844) Pectobacterium atrosepticum SCRI1043 2884108 YP_052243.1 CDS ECA4156 NC_004547.2 4644942 4645145 D hypothetical protein 4644942..4645145 Pectobacterium atrosepticum SCRI1043 2883360 YP_052244.1 CDS ECA4157 NC_004547.2 4645142 4645735 D YhgN; Ec0197; hydrolyzes nucleoside triphosphates with an O6 atom-containing purine base to nucleoside monophosphate and pyrophosphate; seems to play a role in the elimination of aberrant purine-derived nucleotides containing the 6-keto group; shows preference for deoxyinosine triphosphate and xanthosine triphosphate over standard nucleoside triphosphates (dATP, dCTP, dGTP, and dTTP); dITP- and XTP- hydrolase 4645142..4645735 Pectobacterium atrosepticum SCRI1043 2883361 YP_052245.1 CDS gntP NC_004547.2 4646079 4647455 R Similar to Corynebacterium glutamicum gluconate permease GntP or cgl2908 SWALL:Q9AL75 (EMBL:AJ296014) (463 aa) fasta scores: E(): 4.9e-91, 57.01% id in 442 aa, and to Pasteurella multocida GntP GntP_1 or pm0793 SWALL:Q9CMM5 (EMBL:AE006118) (449 aa) fasta scores: E(): 7.8e-114, 69.7% id in 449 aa; gluconate permease complement(4646079..4647455) Pectobacterium atrosepticum SCRI1043 2881584 YP_052246.1 CDS ECA4159 NC_004547.2 <4647613 4647825 D Partial CDS. Similar to the N-terminal regions of Escherichia coli thermosensitive gluconokinase IdnK or GntV or b4268 SWALL:IDNK_ECOLI (SWALL:P39208) (187 aa) fasta scores: E(): 2.8e-13, 61.42% id in 70 aa, and to Yersinia pestis thermosensitive gluconokinase idnk or ypo2540 or gntv or y1646 SWALL:AAM85215 (EMBL:AJ414152) (178 aa) fasta scores: E(): 3.1e-17, 78.57% id in 70 aa; gluconokinase <4647613..4647825 Pectobacterium atrosepticum SCRI1043 2883362 YP_052247.1 CDS gntR NC_004547.2 4647816 >4648331 R Partial CDS. Similar to the C-terminal regions of Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 4.1e-47, 78.36% id in 171 aa, and to Yersinia pestis gluconate utilization system Gnt-I transcriptional repressor gntr or ypo3955 or y3873 SWALL:Q8ZA63 (EMBL:AJ414160) (331 aa) fasta scores: E(): 1.8e-47, 78.94% id in 171 aa; gluconate utilization system Gnt-I transcriptional repressor (partial) complement(4647816..>4648331) Pectobacterium atrosepticum SCRI1043 2881635 YP_052248.1 CDS ECA4161 NC_004547.2 4648692 4650488 D Similar to Alteromonas sp. beta-hexosaminidase A precursor Cht60 SWALL:HEXA_ALTSO (SWALL:P48823) (598 aa) fasta scores: E(): 1.2e-60, 37.11% id in 590 aa, and to Ralstonia solanacearum hydrolase glycosidase protein rsc0769 or rs05085 SWALL:Q8Y1C1 (EMBL:AL646060) (734 aa) fasta scores: E(): 3.2e-82, 45.02% id in 653 aa; beta-hexosaminidase 4648692..4650488 Pectobacterium atrosepticum SCRI1043 2883265 YP_052249.1 CDS ECA4162 NC_004547.2 4650551 4651246 R Similar to Yersinia pestis hypothetical protein ypo3956 or y3872 SWALL:Q8ZA62 (EMBL:AJ414160) (231 aa) fasta scores: E(): 2.2e-82, 82.25% id in 231 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yhhw or stm3544 or sty4267 SWALL:Q8XFI4 (EMBL:AE008863) (231 aa) fasta scores: E(): 4.1e-81, 80.95% id in 231 aa; hypothetical protein complement(4650551..4651246) Pectobacterium atrosepticum SCRI1043 2883266 YP_052250.1 CDS glpC NC_004547.2 4651655 4652866 R anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C complement(4651655..4652866) Pectobacterium atrosepticum SCRI1043 2881262 YP_052251.1 CDS glpB NC_004547.2 4652863 4654125 R sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B complement(4652863..4654125) Pectobacterium atrosepticum SCRI1043 2881324 YP_052252.1 CDS glpA NC_004547.2 4654115 4655785 R anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A complement(4654115..4655785) Pectobacterium atrosepticum SCRI1043 2881323 YP_052253.1 CDS glpT NC_004547.2 4656105 4657454 D catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 4656105..4657454 Pectobacterium atrosepticum SCRI1043 2881896 YP_052254.1 CDS glpQ NC_004547.2 4657530 4658615 D hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 4657530..4658615 Pectobacterium atrosepticum SCRI1043 2881894 YP_052255.1 CDS ECA4168 NC_004547.2 4658794 4659594 R purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; sugar phosphatase complement(4658794..4659594) Pectobacterium atrosepticum SCRI1043 2883267 YP_052256.1 CDS pldB NC_004547.2 4659695 4660732 R lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 complement(4659695..4660732) Pectobacterium atrosepticum SCRI1043 2883489 YP_052257.1 CDS rhtB NC_004547.2 4660865 4661485 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri homoserine/homoserine lactone efflux protein RhtB or b3824 or c4746 or z5345 or ecs4754 or sf3902 SWALL:RHTB_ECOLI (SWALL:P27847) (206 aa) fasta scores: E(): 1.1e-63, 77.18% id in 206 aa. Also similar to ECA0827 (RhtB) (36.019% id. in 211 aa overlap); homoserine/homoserine lactone efflux protein 4660865..4661485 Pectobacterium atrosepticum SCRI1043 2884799 YP_052258.1 CDS rhtC NC_004547.2 4661556 4662179 R Similar to Escherichia coli, and Escherichia coli O157:H7 threonine efflux protein RhtC or b3823 or z5344 or ecs4753 SWALL:RHTC_ECOLI (SWALL:P27846) (206 aa) fasta scores: E(): 3.3e-62, 73.43% id in 207 aa; threonine efflux system complement(4661556..4662179) Pectobacterium atrosepticum SCRI1043 2884800 YP_052259.1 CDS recQ NC_004547.2 4662224 4664050 R functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ complement(4662224..4664050) Pectobacterium atrosepticum SCRI1043 2885108 YP_052260.1 CDS pldA NC_004547.2 4664149 4665015 R catalyzes the hydrolysis of phosphatidylcholine; phospholipase A complement(4664149..4665015) Pectobacterium atrosepticum SCRI1043 2883488 YP_052261.1 CDS ECA4174 NC_004547.2 4665267 4665755 D Similar to Yersinia pestis hypothetical protein ypo3835 or y0395 SWALL:Q8ZAG7 (EMBL:AJ414159) (156 aa) fasta scores: E(): 1.4e-35, 63.39% id in 153 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yigi or b3820 or c4741 or sf3898 SWALL:YIGI_ECOLI (SWALL:P27845) (155 aa) fasta scores: E(): 1.6e-35, 64.9% id in 151 aa; hypothetical protein 4665267..4665755 Pectobacterium atrosepticum SCRI1043 2883217 YP_052262.1 CDS ECA4175 NC_004547.2 4665855 4666784 D Similar to Yersinia pestis membrane protein ypo3836 SWALL:Q8ZAG6 (EMBL:AJ414159) (296 aa) fasta scores: E(): 1.9e-90, 76.68% id in 296 aa, and to Escherichia coli protein RarD or b3819 SWALL:RARD_ECOLI (SWALL:P27844) (296 aa) fasta scores: E(): 5e-85, 70.94% id in 296 aa; hypothetical protein 4665855..4666784 Pectobacterium atrosepticum SCRI1043 2883218 YP_052263.1 CDS abrB NC_004547.2 4666750 4667808 R Similar to Escherichia coli AbrB protein AbrB or b0715 SWALL:ABRB_ECOLI (SWALL:P75747) (348 aa) fasta scores: E(): 4.8e-66, 51.91% id in 339 aa, and to Salmonella typhi membrane protein sty0772 SWALL:Q8Z8D1 (EMBL:AL627268) (348 aa) fasta scores: E(): 2.1e-67, 53.39% id in 339 aa; hypothetical protein complement(4666750..4667808) Pectobacterium atrosepticum SCRI1043 2885153 YP_052264.1 CDS corA NC_004547.2 4668036 4668986 R responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA complement(4668036..4668986) Pectobacterium atrosepticum SCRI1043 2884950 YP_052265.1 CDS ECA4178 NC_004547.2 4669394 4670140 R Similar to Staphylococcus epidermidis conserved hypothetical protein se2383 SWALL:AAO06026 (EMBL:AE016752) (247 aa) fasta scores: E(): 4.6e-48, 50.21% id in 237 aa, and to Pasteurella multocida hypothetical protein Pm0097 SWALL:Q9CPE7 (EMBL:AE006045) (247 aa) fasta scores: E(): 7.6e-57, 58.43% id in 243 aa; hypothetical protein complement(4669394..4670140) Pectobacterium atrosepticum SCRI1043 2883219 YP_052266.1 CDS uvrD NC_004547.2 4670269 4672431 R unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II complement(4670269..4672431) Pectobacterium atrosepticum SCRI1043 2882767 YP_052267.1 CDS ECA4180 NC_004547.2 4672514 4673230 R YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase complement(4672514..4673230) Pectobacterium atrosepticum SCRI1043 2883220 YP_052268.1 CDS xerC NC_004547.2 4673230 4674165 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(4673230..4674165) Pectobacterium atrosepticum SCRI1043 2882647 YP_052269.1 CDS ECA4182 NC_004547.2 4674162 4674866 R Similar to Yersinia pestis hypothetical protein ypo3844 or y0386 SWALL:Q8ZAF8 (EMBL:AJ414159) (234 aa) fasta scores: E(): 1.8e-68, 73.93% id in 234 aa, and to Salmonella typhi hypothetical protein Sty3611 SWALL:Q8Z3A7 (EMBL:AL627279) (235 aa) fasta scores: E(): 4.6e-60, 64.68% id in 235 aa; hypothetical protein complement(4674162..4674866) Pectobacterium atrosepticum SCRI1043 2883194 YP_052270.1 CDS dapF NC_004547.2 4674863 4675687 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(4674863..4675687) Pectobacterium atrosepticum SCRI1043 2885140 YP_052271.1 CDS ECA4184 NC_004547.2 4675765 4675950 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein yifl precursor yifl or b3808.1 or c4729 or z5325 or ecs4737.1 or sf3886 SWALL:AAN83162 (EMBL:M87049) (67 aa) fasta scores: E(): 0.00042, 45.09% id in 51 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical lipoprotein yifl precursor yifl or stm3946 or stmd1.100 or sty3613 or t3351 SWALL:YIFL_SALTY (SWALL:Q9L6P7) (67 aa) fasta scores: E(): 0.00042, 43.13% id in 51 aa; lipoprotein complement(4675765..4675950) Pectobacterium atrosepticum SCRI1043 2883195 YP_052272.1 CDS cyaY NC_004547.2 4676010 4676330 D defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 4676010..4676330 Pectobacterium atrosepticum SCRI1043 2883172 YP_052273.1 CDS ECA4186 NC_004547.2 4676383 4677558 R Similar to Bradyrhizobium japonicum mfs permease blr1017 SWALL:BAC46282 (EMBL:AP005938) (417 aa) fasta scores: E(): 8.2e-38, 34.6% id in 393 aa, and to Pseudomonas aeruginosa similar to metabolite transport protein SWALL:AAN62124 (EMBL:AF440523) (408 aa) fasta scores: E(): 1e-35, 34.2% id in 383 aa; hypothetical protein complement(4676383..4677558) Pectobacterium atrosepticum SCRI1043 2883196 YP_052274.1 CDS cyaA NC_004547.2 4677604 4680162 R catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase complement(4677604..4680162) Pectobacterium atrosepticum SCRI1043 2883326 YP_052275.1 CDS hemC NC_004547.2 4680620 4681561 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4680620..4681561 Pectobacterium atrosepticum SCRI1043 2885596 YP_052276.1 CDS hemD NC_004547.2 4681558 4682298 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 4681558..4682298 Pectobacterium atrosepticum SCRI1043 2885668 YP_052277.1 CDS hemX NC_004547.2 4682322 4683446 D Similar to Escherichia coli uroporphyrin-III C-methyltransferase HemX or b3803 SWALL:HEMX_ECOLI (SWALL:P09127) (393 aa) fasta scores: E(): 5.1e-71, 60.54% id in 370 aa; uroporphyrinogen III C-methyltransferase 4682322..4683446 Pectobacterium atrosepticum SCRI1043 2882233 YP_052278.1 CDS hemY NC_004547.2 4683449 4684642 D Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri HemY protein HemY or b3802 or c4721 or z5316 or ecs4732 or sf3874 SWALL:HEMY_ECOLI (SWALL:P09128) (398 aa) fasta scores: E(): 1.3e-109, 73.02% id in 393 aa, and to Salmonella typhi porphyrin biosynthetic protein sty3624 SWALL:Q8Z398 (EMBL:AL627279) (399 aa) fasta scores: E(): 7e-108, 71.24% id in 393 aa; protoheme IX biogenesis protein 4683449..4684642 Pectobacterium atrosepticum SCRI1043 2882234 YP_052279.1 CDS ECA4192 NC_004547.2 4685315 4686472 R Similar to Sulfolobus solfataricus thermostable carboxypeptidase 1 CpsA1 or CpsA-1 or CpsA or sso1355 SWALL:CBP1_SULSO (SWALL:P80092) (393 aa) fasta scores: E(): 6.5e-42, 36.93% id in 379 aa, and to Zymomonas mobilis amino acid amido hydrolase SWALL:Q9FDK6 (EMBL:AF212041) (380 aa) fasta scores: E(): 2.3e-67, 46.93% id in 375 aa; peptidase complement(4685315..4686472) Pectobacterium atrosepticum SCRI1043 2883126 YP_052280.1 CDS ECA4193 NC_004547.2 4686550 4687311 R Similar to Bacillus subtilis probable amino-acid ABC transporter ATP-binding protein YxeO or lp9G SWALL:YXEO_BACSU (SWALL:P54954) (249 aa) fasta scores: E(): 1.6e-51, 63.2% id in 250 aa, and to Clostridium acetobutylicum ABC-type polar amino acid transport system, ATPase component cac0879 SWALL:Q97KN8 (EMBL:AE007603) (243 aa) fasta scores: E(): 4.7e-45, 57.43% id in 242 aa; amino acid ABC transporter ATP-binding protein complement(4686550..4687311) Pectobacterium atrosepticum SCRI1043 2883127 YP_052281.1 CDS ECA4194 NC_004547.2 4687321 4687992 R Similar to Vibrio harveyi probable amino-acid ABC transporter permease protein PatM SWALL:PATM_VIBHA (SWALL:P52625) (223 aa) fasta scores: E(): 2.3e-36, 47.98% id in 223 aa, and to Bacillus subtilis probable amino-acid ABC transporter permease protein yxen or lp9F SWALL:YXEN_BACSU (SWALL:P54953) (224 aa) fasta scores: E(): 1.2e-45, 57.07% id in 219 aa; amino acid ABC transporter permease complement(4687321..4687992) Pectobacterium atrosepticum SCRI1043 2883128 YP_052282.1 CDS ECA4195 NC_004547.2 4688132 4688923 R Similar to Vibrio harveyi amino-acid ABC transporter binding protein PatH precursor PatH SWALL:PATH_VIBHA (SWALL:P52626) (248 aa) fasta scores: E(): 1.6e-27, 39.6% id in 255 aa, and to Bacillus subtilis probable amino-acid ABC transporter binding protein yxem precursor yxem or lp9E SWALL:YXEM_BACSU (SWALL:P54952) (264 aa) fasta scores: E(): 4.7e-48, 53.28% id in 259 aa; amino acid ABC transporter binding protein complement(4688132..4688923) Pectobacterium atrosepticum SCRI1043 2883129 YP_052283.1 CDS ECA4196 NC_004547.2 4688920 4689462 R Similar to Bacillus subtilis hypothetical protein yxel or lp9D SWALL:YXEL_BACSU (SWALL:P54951) (165 aa) fasta scores: E(): 1.2e-30, 49.69% id in 165 aa, and to Listeria innocua hypothetical protein Lin2444 lin2444 SWALL:Q928T8 (EMBL:AL596172) (178 aa) fasta scores: E(): 1.6e-20, 38.18% id in 165 aa; acetyltransferase complement(4688920..4689462) Pectobacterium atrosepticum SCRI1043 2882872 YP_052284.1 CDS ECA4197 NC_004547.2 4689472 4690836 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(4689472..4690836) Pectobacterium atrosepticum SCRI1043 2882873 YP_052285.1 CDS ECA4198 NC_004547.2 4691085 4692392 D Similar to Pseudomonas syringae phytase PhyM SWALL:AAN77879 (EMBL:AY156083) (428 aa) fasta scores: E(): 3.4e-77, 48.73% id in 433 aa, and to Escherichia coli glucose-1-phosphatase precursor Agp or b1002 SWALL:AGP_ECOLI (SWALL:P19926) (413 aa) fasta scores: E(): 1.5e-31, 31.08% id in 415 aa; exported phosphatase 4691085..4692392 Pectobacterium atrosepticum SCRI1043 2882874 YP_052286.1 CDS ECA4199 NC_004547.2 4693180 4694568 R uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transporter complement(4693180..4694568) Pectobacterium atrosepticum SCRI1043 2882780 YP_052287.1 CDS wecG NC_004547.2 4694897 4695646 R Similar to Escherichia coli probable UDP-N-acetyl-D-mannosaminuronic acid transferase WecG or RffM or b3794 SWALL:WECG_ECOLI (SWALL:P27836) (246 aa) fasta scores: E(): 9.8e-68, 72.76% id in 246 aa; UDP-N-acetyl-D-mannosaminuronic acid transferase complement(4694897..4695646) Pectobacterium atrosepticum SCRI1043 2882657 YP_052288.1 CDS wzyE NC_004547.2 4695643 4697034 R enterobacterial common antigen polymerase; common antigen polymerase complement(4695643..4697034) Pectobacterium atrosepticum SCRI1043 2882650 YP_052289.1 CDS wecF NC_004547.2 4697031 4698116 R catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase complement(4697031..4698116) Pectobacterium atrosepticum SCRI1043 2882656 YP_052290.1 CDS wzxE NC_004547.2 4698113 4699363 R Similar to Escherichia coli, and Shigella flexneri wzxe protein WzxE or Wzx or b3792 or sf3866 SWALL:WZXE_ECOLI (SWALL:P27834) (416 aa) fasta scores: E(): 6.6e-111, 72.11% id in 416 aa, and to Yersinia pestis lipopolysaccharide biosynthesis protein WzxE or ypo3858 or y0370 SWALL:Q8ZAE9 (EMBL:AJ414159) (418 aa) fasta scores: E(): 4e-119, 76.92% id in 416 aa; entero common antigen (ECA) biosynthesis protein complement(4698113..4699363) Pectobacterium atrosepticum SCRI1043 2882655 YP_052291.1 CDS rffA NC_004547.2 4699365 4700495 R catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase complement(4699365..4700495) Pectobacterium atrosepticum SCRI1043 2885071 YP_052292.1 CDS rffC NC_004547.2 4700500 4701231 R Similar to Escherichia coli lipopolysaccharide biosynthesis protein RffC or WecD or b3790 SWALL:RFFC_ECOLI (SWALL:P27832) (181 aa) fasta scores: E(): 1e-33, 55.78% id in 190 aa; TDP-fucosamine acetyltransferase complement(4700500..4701231) Pectobacterium atrosepticum SCRI1043 2885066 YP_052293.1 CDS rffG NC_004547.2 4701286 4702353 R Similar to Escherichia coli dTDP-glucose 4,6-dehydratase RffG or b3788 SWALL:RFFG_ECOLI (SWALL:P27830) (355 aa) fasta scores: E(): 6.4e-119, 83% id in 353 aa; dTDP-glucose 4,6-dehydratase complement(4701286..4702353) Pectobacterium atrosepticum SCRI1043 2885067 YP_052294.1 CDS wecC NC_004547.2 4702350 4703612 R catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase complement(4702350..4703612) Pectobacterium atrosepticum SCRI1043 2882660 YP_052295.1 CDS wecB NC_004547.2 4703738 4704862 R Similar to Escherichia coli UDP-N-acetylglucosamine 2-epimerase WecB or RffE or NfrC or b3786 SWALL:WECB_ECOLI (SWALL:P27828) (376 aa) fasta scores: E(): 8.5e-116, 77.21% id in 373 aa; UDP-N-acetylglucosamine 2-epimerase complement(4703738..4704862) Pectobacterium atrosepticum SCRI1043 2882659 YP_052296.1 CDS wzzE NC_004547.2 4704930 4705976 R Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE complement(4704930..4705976) Pectobacterium atrosepticum SCRI1043 2882651 YP_052297.1 CDS wecA NC_004547.2 4705998 4707095 R Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase WecA or Rfe or b3784 or c4704 or sf3858 SWALL:WECA_ECOLI (SWALL:P24235) (367 aa) fasta scores: E(): 7.4e-112, 75.97% id in 358 aa; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase complement(4705998..4707095) Pectobacterium atrosepticum SCRI1043 2882360 YP_052298.1 CDS rho NC_004547.2 4707399 4708658 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(4707399..4708658) Pectobacterium atrosepticum SCRI1043 2884683 YP_052299.1 CDS ECA4212 NC_004547.2 4709153 4709479 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri thioredoxin 1 SWALL:THIO_ECOLI (SWALL:P00274) (108 aa) fasta scores: E(): 1e-36, 88.78% id in 107 aa; thioredoxin complement(4709153..4709479) Pectobacterium atrosepticum SCRI1043 2882781 YP_052300.1 CDS rhlB NC_004547.2 4709598 4710890 D enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4709598..4710890 Pectobacterium atrosepticum SCRI1043 2884634 YP_052301.1 CDS gppA NC_004547.2 4710897 4712393 D catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase 4710897..4712393 Pectobacterium atrosepticum SCRI1043 2885504 YP_052302.1 CDS rep NC_004547.2 4712411 4714432 R single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep complement(4712411..4714432) Pectobacterium atrosepticum SCRI1043 2885252 YP_052303.1 CDS ppiC NC_004547.2 4714592 4714873 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 peptidyl-prolyl cis-trans isomerase C PpiC or ParvA or b3775 or c4697 or z5286 or ecs4709 SWALL:PPIC_ECOLI (SWALL:P39159) (92 aa) fasta scores: E(): 2e-25, 71.73% id in 92 aa; peptidyl-prolyl cis-trans isomerase C 4714592..4714873 Pectobacterium atrosepticum SCRI1043 2882818 YP_052304.1 CDS putA NC_004547.2 4714953 4718921 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(4714953..4718921) Pectobacterium atrosepticum SCRI1043 2882674 YP_052305.1 CDS putP NC_004547.2 4719117 4720601 D Similar to Escherichia coli sodium/proline symporter PutP or b1015 SWALL:PUTP_ECOLI (SWALL:P07117) (502 aa) fasta scores: E(): 3.3e-158, 80.93% id in 493 aa; sodium/proline symporter 4719117..4720601 Pectobacterium atrosepticum SCRI1043 2882675 YP_052306.1 CDS ECA4219 NC_004547.2 4720644 4721531 R Similar to Rhizobium loti probable transcriptional regulator mlr0244 SWALL:Q98N89 (EMBL:AP002994) (308 aa) fasta scores: E(): 2.1e-52, 49.83% id in 295 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp1146 or rs05458 SWALL:Q8XQS3 (EMBL:AL646083) (298 aa) fasta scores: E(): 2e-47, 47.49% id in 299 aa; LysR family transcriptional regulator complement(4720644..4721531) Pectobacterium atrosepticum SCRI1043 2882782 YP_052307.1 CDS ECA4220 NC_004547.2 4721633 4722259 D Similar to Streptomyces coelicolor hypothetical protein sco0965 or scm11.20C SWALL:Q9RIU2 (EMBL:AL939107) (219 aa) fasta scores: E(): 1.8e-24, 45.21% id in 188 aa, and to Rhizobium loti hypothetical protein Mll0243 SWALL:Q98N90 (EMBL:AP002994) (231 aa) fasta scores: E(): 4.1e-19, 40% id in 195 aa; hypothetical protein 4721633..4722259 Pectobacterium atrosepticum SCRI1043 2882753 YP_052308.1 CDS ilvC NC_004547.2 4722380 4723858 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(4722380..4723858) Pectobacterium atrosepticum SCRI1043 2881794 YP_052309.1 CDS ilvY NC_004547.2 4724026 4724916 D participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4724026..4724916 Pectobacterium atrosepticum SCRI1043 2881788 YP_052310.1 CDS ECA4223 NC_004547.2 4724913 4725713 D Similar to Shewanella oneidensis conserved hypothetical protein so0112 SWALL:AAN53199 (EMBL:AE015462) (207 aa) fasta scores: E(): 2.1e-05, 28.85% id in 201 aa, and to Xanthomonas axonopodis hypothetical protein Xac3205 SWALL:Q8PHP4 (EMBL:AE011966) (389 aa) fasta scores: E(): 6.4e-05, 26.4% id in 231 aa; hypothetical protein 4724913..4725713 Pectobacterium atrosepticum SCRI1043 2882754 YP_052311.1 CDS ECA4224 NC_004547.2 4725732 4726475 R Similar to Xanthomonas campestris hypothetical protein Xcc1550 SWALL:Q8PAD5 (EMBL:AE012256) (228 aa) fasta scores: E(): 2.8e-11, 27.6% id in 221 aa, and to Shewanella oneidensis conserved hypothetical protein so1579 SWALL:AAN54636 (EMBL:AE015603) (235 aa) fasta scores: E(): 3.3e-10, 24.65% id in 215 aa; hypothetical protein complement(4725732..4726475) Pectobacterium atrosepticum SCRI1043 2882755 YP_052312.1 CDS ilvA NC_004547.2 4726569 4728119 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(4726569..4728119) Pectobacterium atrosepticum SCRI1043 2882281 YP_052313.1 CDS ilvD NC_004547.2 4728119 4729969 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(4728119..4729969) Pectobacterium atrosepticum SCRI1043 2881795 YP_052314.1 CDS ilvE NC_004547.2 4730043 4730969 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(4730043..4730969) Pectobacterium atrosepticum SCRI1043 2881796 YP_052315.1 CDS ilvM NC_004547.2 4730994 4731254 R Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri acetolactate synthase isozyme II small subunit IlvM or b3769 or c4691 or sf3844 SWALL:ILVM_ECOLI (SWALL:P13048) (86 aa) fasta scores: E(): 1.8e-18, 63.52% id in 85 aa; acetolactate synthase 2 regulatory subunit complement(4730994..4731254) Pectobacterium atrosepticum SCRI1043 2881786 YP_052316.1 CDS ilvG NC_004547.2 4731332 4732978 R catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit complement(4731332..4732978) Pectobacterium atrosepticum SCRI1043 2882124 YP_052317.1 CDS ECA4230 NC_004547.2 4733613 4735139 D Similar to Haemophilus influenzae competence protein ComM or hi1117 SWALL:COMM_HAEIN (SWALL:P45049) (509 aa) fasta scores: E(): 2.2e-110, 64.22% id in 506 aa, and to Yersinia pestis magnesium chelatase family protein ypo3902 SWALL:Q8ZAA9 (EMBL:AJ414159) (507 aa) fasta scores: E(): 5e-130, 73.96% id in 507 aa; magnesium-chelatase 4733613..4735139 Pectobacterium atrosepticum SCRI1043 2882756 YP_052318.1 CDS ECA4231 NC_004547.2 4735197 4735535 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri protein yife or b3764 or c4686 or z5276 or ecs4699 or sf3840 SWALL:AAN45278 (EMBL:M87049) (112 aa) fasta scores: E(): 2.1e-36, 79.46% id in 112 aa, and to Yersinia pestis hypothetical protein Ypo3903 SWALL:Q8ZAA8 (EMBL:AJ414159) (112 aa) fasta scores: E(): 7.3e-36, 81.25% id in 112 aa; hypothetical protein complement(4735197..4735535) Pectobacterium atrosepticum SCRI1043 2882274 YP_052319.1 CDS hdfR NC_004547.2 4735656 4736483 D Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR 4735656..4736483 Pectobacterium atrosepticum SCRI1043 2883110 YP_052320.1 CDS ECA4233 NC_004547.2 4736505 4737467 R membrane component of a sugar ABC transporter system; inner membrane ABC transporter permease YjfF complement(4736505..4737467) Pectobacterium atrosepticum SCRI1043 2882275 YP_052321.1 CDS ECA4234 NC_004547.2 4737467 4738477 R Similar to Yersinia pestis sugar transport system permease ypo3906 or y0330 SWALL:AAM83921 (EMBL:AJ414159) (339 aa) fasta scores: E(): 1.4e-95, 83.89% id in 329 aa, and to Escherichia coli hypothetical ABC transporter permease protein ytft or b4230 SWALL:YTFT_ECOLI (SWALL:P39328) (341 aa) fasta scores: E(): 9.1e-79, 71.11% id in 322 aa; ABC transporter permease complement(4737467..4738477) Pectobacterium atrosepticum SCRI1043 2882276 YP_052322.1 CDS ECA4235 NC_004547.2 4738464 4739990 R Similar to Yersinia pestis sugar transport system ATP-binding protein ypo3907 or y0329 SWALL:Q8ZAA4 (EMBL:AJ414159) (496 aa) fasta scores: E(): 1.2e-141, 79.51% id in 493 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein ytfr or b4228/b4429 or z5839 or ecs5206 SWALL:YTFR_ECOLI (SWALL:P39326) (500 aa) fasta scores: E(): 1.1e-118, 67.82% id in 491 aa; ABC transporter ATP-binding protein complement(4738464..4739990) Pectobacterium atrosepticum SCRI1043 2882367 YP_052323.1 CDS ECA4236 NC_004547.2 4740175 4741131 R Similar to Escherichia coli ABC transporter periplasmic binding protein ytfq precursor ytfq or b4227 SWALL:YTFQ_ECOLI (SWALL:P39325) (318 aa) fasta scores: E(): 9.2e-84, 75.78% id in 318 aa, and to Yersinia pestis periplasmic protein ypo3908 or y0328 SWALL:AAM83919 (EMBL:AJ414159) (318 aa) fasta scores: E(): 9.3e-98, 88.36% id in 318 aa; ABC transporter periplasmic-binding protein complement(4740175..4741131) Pectobacterium atrosepticum SCRI1043 2882368 YP_052324.1 CDS murI NC_004547.2 4747351 4748208 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(4747351..4748208) Pectobacterium atrosepticum SCRI1043 2882085 YP_052325.1 CDS btuB NC_004547.2 4748153 4750000 R involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter complement(4748153..4750000) Pectobacterium atrosepticum SCRI1043 2885477 YP_052326.1 CDS trmA NC_004547.2 4750499 4751602 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4750499..4751602 Pectobacterium atrosepticum SCRI1043 2884249 YP_052327.1 CDS ECA4240 NC_004547.2 4751643 4752029 R Similar to Yersinia pestis membrane protein ypo3912 or y0323 SWALL:AAM83914 (EMBL:AJ414159) (135 aa) fasta scores: E(): 3e-29, 63.86% id in 119 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yijd or b3964 or c4927 or z5525 or ecs4895 SWALL:YIJD_ECOLI (SWALL:P27308) (119 aa) fasta scores: E(): 4.3e-29, 65.48% id in 113 aa; hypothetical protein complement(4751643..4752029) Pectobacterium atrosepticum SCRI1043 2882369 YP_052328.1 CDS ECA4241 NC_004547.2 4752062 4752703 R negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR complement(4752062..4752703) Pectobacterium atrosepticum SCRI1043 2882370 YP_052329.1 CDS sthA NC_004547.2 4752903 4754309 D catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4752903..4754309 Pectobacterium atrosepticum SCRI1043 2884342 YP_052330.1 CDS oxyR NC_004547.2 4754301 4755209 R Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR complement(4754301..4755209) Pectobacterium atrosepticum SCRI1043 2885410 YP_052331.1 CDS metF NC_004547.2 4755816 4756712 R MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase complement(4755816..4756712) Pectobacterium atrosepticum SCRI1043 2883948 YP_052332.1 CDS pdeA NC_004547.2 4757242 4758003 R Similar to Comamonas acidovorans phosphodiesterase PdeA SWALL:Q8GMW5 (EMBL:AF548455) (263 aa) fasta scores: E(): 2.1e-33, 40.15% id in 254 aa, and to Rhizobium loti 3',5'-cyclic-nucleotide phosphodiesterase, cpda mll3631 SWALL:Q98FT1 (EMBL:AP003002) (305 aa) fasta scores: E(): 3.1e-48, 52.19% id in 251 aa; phosphodiesterase complement(4757242..4758003) Pectobacterium atrosepticum SCRI1043 2882091 YP_052333.1 CDS ECA4246 NC_004547.2 4758051 4759055 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribose operon repressor RbsR or b3753 or c4681 or z5254 or ecs4695 or sf3836 SWALL:RBSR_ECOLI (SWALL:P25551) (329 aa) fasta scores: E(): 1.9e-18, 30.63% id in 333 aa, and to Rhizobium meliloti transcriptional regulator protein rb0352 or smb20366 SWALL:Q92WI7 (EMBL:AL603643) (334 aa) fasta scores: E(): 8.1e-42, 43.84% id in 317 aa; sugar binding transcriptional regulator complement(4758051..4759055) Pectobacterium atrosepticum SCRI1043 2882217 YP_052334.1 CDS ECA4247 NC_004547.2 4759052 4759858 R Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4571 or agr_l_601 SWALL:Q8U783 (EMBL:AE009385) (288 aa) fasta scores: E(): 3.3e-27, 34.36% id in 259 aa, and to Yersinia pestis binding-protein-dependent transport system membrane protein ypo2030 or y2280 SWALL:AAM85839 (EMBL:AJ414151) (278 aa) fasta scores: E(): 4.1e-24, 30.62% id in 271 aa; ABC transporter permease complement(4759052..4759858) Pectobacterium atrosepticum SCRI1043 2882218 YP_052335.1 CDS ECA4248 NC_004547.2 4759855 4760694 R Similar to Bradyrhizobium japonicum ABC transporter permease protein blr3545 SWALL:BAC48810 (EMBL:AP005948) (293 aa) fasta scores: E(): 1.5e-10, 26.61% id in 278 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4570 or agr_l_602 SWALL:Q8U784 (EMBL:AE009385) (285 aa) fasta scores: E(): 2e-10, 24.72% id in 275 aa; ABC transporter permease complement(4759855..4760694) Pectobacterium atrosepticum SCRI1043 2882219 YP_052336.1 CDS ECA4249 NC_004547.2 4760764 4761897 R Similar to Escherichia coli, and Escherichia coli O157:H7 maltose-binding periplasmic protein precursor MalE or b4034 or z5632 or ecs5017 SWALL:MALE_ECOLI (SWALL:P02928) (396 aa) fasta scores: E(): 0.00014, 26.87% id in 387 aa, and to Yersinia pestis ABC transporter periplasmic binding protein y2281 SWALL:AAM85840 (EMBL:AE013831) (360 aa) fasta scores: E(): 6.8e-13, 26.11% id in 337 aa; ABC transporter periplasmic-binding protein complement(4760764..4761897) Pectobacterium atrosepticum SCRI1043 2882271 YP_052337.1 CDS ECA4250 NC_004547.2 4761920 4763086 R Similar to Escherichia coli putrescine transport ATP-binding protein PotG or b0855 SWALL:POTG_ECOLI (SWALL:P31134) (377 aa) fasta scores: E(): 1.2e-43, 41.97% id in 355 aa, and to Bradyrhizobium japonicum ABC transporter ATP-binding protein bll7196 SWALL:BAC52461 (EMBL:AP005961) (365 aa) fasta scores: E(): 1e-45, 44.02% id in 318 aa, and to Rhizobium meliloti ABC transporter, ATP-binding protein ra1191 or sma2207 SWALL:Q92XQ3 (EMBL:AE007304) (361 aa) fasta scores: E(): 1.5e-45, 43.42% id in 350 aa; ABC transporter ATP-binding protein complement(4761920..4763086) Pectobacterium atrosepticum SCRI1043 2882272 YP_052338.1 CDS metL NC_004547.2 4763293 4765728 R multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II complement(4763293..4765728) Pectobacterium atrosepticum SCRI1043 2883540 YP_052339.1 CDS metB NC_004547.2 4765731 4766891 R catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase complement(4765731..4766891) Pectobacterium atrosepticum SCRI1043 2883958 YP_052340.1 CDS metJ NC_004547.2 4767078 4767395 D when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4767078..4767395 Pectobacterium atrosepticum SCRI1043 2883941 YP_052341.1 CDS ECA4254 NC_004547.2 4767603 4768400 D Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 1.2e-25, 37.5% id in 256 aa, and to Brucella melitensis iron(III) dicitrate transport ATP-binding protein bmeii0537 SWALL:Q8YCJ1 (EMBL:AE009689) (264 aa) fasta scores: E(): 6e-28, 42.21% id in 244 aa; iron(III) ABC transporter ATP-binding protein 4767603..4768400 Pectobacterium atrosepticum SCRI1043 2882273 YP_052342.1 CDS ECA4255 NC_004547.2 4768410 4769372 D Similar to Rhizobium loti iron(III) ABC transporter, periplasmic-binding protein mlr8228 SWALL:Q983Q2 (EMBL:AP003013) (315 aa) fasta scores: E(): 8e-77, 62.38% id in 319 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2913 pa2913 SWALL:Q9HZT4 (EMBL:AE004717) (323 aa) fasta scores: E(): 1.3e-50, 45.57% id in 316 aa; iron(III) ABC transporter periplasmic-binding protein 4768410..4769372 Pectobacterium atrosepticum SCRI1043 2882445 YP_052343.1 CDS ECA4256 NC_004547.2 4769378 4770382 D Similar to Bordetella avium BhuU bhuU SWALL:Q8L1U4 (EMBL:AY095952) (334 aa) fasta scores: E(): 1.1e-33, 38.8% id in 317 aa, and to Rhizobium loti ABC transporter, permease protein mlr8229 SWALL:Q983Q1 (EMBL:AP003013) (349 aa) fasta scores: E(): 1.3e-61, 54.4% id in 329 aa; iron(III) ABC transporter permease 4769378..4770382 Pectobacterium atrosepticum SCRI1043 2882446 YP_052344.1 CDS rpmE NC_004547.2 4770469 4770684 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(4770469..4770684) Pectobacterium atrosepticum SCRI1043 2884494 YP_052345.1 CDS priA NC_004547.2 4770998 4773196 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 4770998..4773196 Pectobacterium atrosepticum SCRI1043 2882310 YP_052346.1 CDS cytR NC_004547.2 4773468 4774511 D negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR 4773468..4774511 Pectobacterium atrosepticum SCRI1043 2882626 YP_052347.1 CDS ftsN NC_004547.2 4774820 4775677 D Similar to Escherichia coli cell division protein FtsN or MsgA or b3933 SWALL:FTSN_ECOLI (SWALL:P29131) (319 aa) fasta scores: E(): 9.1e-25, 50.63% id in 314 aa; cell division protein FtsN 4774820..4775677 Pectobacterium atrosepticum SCRI1043 2883715 YP_052348.1 CDS hslV NC_004547.2 4775884 4776414 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4775884..4776414 Pectobacterium atrosepticum SCRI1043 2883837 YP_052349.1 CDS hslU NC_004547.2 4776424 4777755 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4776424..4777755 Pectobacterium atrosepticum SCRI1043 2884053 YP_052350.1 CDS menA NC_004547.2 4777900 4778817 D catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4777900..4778817 Pectobacterium atrosepticum SCRI1043 2884910 YP_052351.1 CDS menG NC_004547.2 4778952 4779437 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4778952..4779437 Pectobacterium atrosepticum SCRI1043 2885720 YP_052352.1 CDS ECA4265 NC_004547.2 4779555 4779794 R Similar to Yersinia pestis hypothetical protein ypo0093 or y0045 SWALL:AAM83640 (EMBL:AJ414141) (79 aa) fasta scores: E(): 1.4e-20, 88.6% id in 79 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yiiu or b3928 or c4880 or z5473 or ecs4853 or sf4006 SWALL:YIIU_ECOLI (SWALL:P32164) (81 aa) fasta scores: E(): 4.8e-17, 78.48% id in 79 aa; hypothetical protein complement(4779555..4779794) Pectobacterium atrosepticum SCRI1043 2882447 YP_052353.1 CDS glpF NC_004547.2 4780345 4781184 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycerol uptake facilitator protein GlpF or b3927 or c4879 or z5472 or ecs4852 SWALL:GLPF_ECOLI (SWALL:P11244) (281 aa) fasta scores: E(): 4.4e-90, 80.71% id in 280 aa; glycerol uptake facilitator protein 4780345..4781184 Pectobacterium atrosepticum SCRI1043 2881387 YP_052354.1 CDS glpK NC_004547.2 4781238 4782749 D Similar to Escherichia coli, and Escherichia coli O157:H7 glycerol kinase GlpK or b3926 or z5471 or ecs4851 SWALL:GLPK_ECOLI (SWALL:P08859) (501 aa) fasta scores: E(): 6.5e-179, 85.97% id in 499 aa; glycerol kinase 4781238..4782749 Pectobacterium atrosepticum SCRI1043 2881389 YP_052355.1 CDS glpX NC_004547.2 4782875 4783885 D type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 4782875..4783885 Pectobacterium atrosepticum SCRI1043 2881963 YP_052356.1 CDS fpr NC_004547.2 4784192 4784938 D Similar to Escherichia coli ferredoxin--NADP reductase Fpr or MvrA or b3924 SWALL:FENR_ECOLI (SWALL:P28861) (247 aa) fasta scores: E(): 1e-75, 76.11% id in 247 aa; ferredoxin-NADP reductase 4784192..4784938 Pectobacterium atrosepticum SCRI1043 2885171 YP_052357.1 CDS ECA4270 NC_004547.2 4784957 4785379 R Similar to Yersinia pestis conserved membrane protein ypo0087 SWALL:Q8ZJK7 (EMBL:AJ414141) (144 aa) fasta scores: E(): 5.8e-43, 66.66% id in 138 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein yiir or stm4083 or sty3787 SWALL:Q8XFX4 (EMBL:AE008890) (142 aa) fasta scores: E(): 8.1e-38, 60.43% id in 139 aa; hypothetical protein complement(4784957..4785379) Pectobacterium atrosepticum SCRI1043 2882448 YP_052358.1 CDS ECA4271 NC_004547.2 4785577 4786176 D Similar to Yersinia pestis exported protein ypo0086 SWALL:Q8ZJK8 (EMBL:AJ414141) (211 aa) fasta scores: E(): 5.1e-34, 59.39% id in 197 aa, and to Escherichia coli hypothetical protein yiiq precursor yiiq or b3920 SWALL:YIIQ_ECOLI (SWALL:P32160) (199 aa) fasta scores: E(): 1e-33, 56.84% id in 190 aa; hypothetical protein 4785577..4786176 Pectobacterium atrosepticum SCRI1043 2882389 YP_052359.1 CDS tpiA NC_004547.2 4786326 4787093 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 4786326..4787093 Pectobacterium atrosepticum SCRI1043 2884259 YP_052360.1 CDS ECA4273 NC_004547.2 4787304 4788410 R catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase complement(4787304..4788410) Pectobacterium atrosepticum SCRI1043 2882390 YP_052361.1 CDS ECA4274 NC_004547.2 4788411 4789295 R Similar to Yersinia pestis carbon-nitrogen hydrolase ypo0938 or y3324 SWALL:Q8ZHG1 (EMBL:AJ414145) (294 aa) fasta scores: E(): 2.8e-116, 93.87% id in 294 aa, and to Pseudomonas aeruginosa probable hydratase pa0293 SWALL:Q9I6J8 (EMBL:AE004467) (292 aa) fasta scores: E(): 4.5e-79, 65.05% id in 289 aa; carbon-nitrogen hydrolase complement(4788411..4789295) Pectobacterium atrosepticum SCRI1043 2882391 YP_052362.1 CDS ECA4275 NC_004547.2 4790053 4790571 D Similar to Vibrio cholerae hcp=28 kDa secreted hydrophilic protein (HcpA or vca0017) and (hcp or vc1415) SWALL:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 4.3e-56, 78.48% id in 172 aa, and to Yersinia pestis hypothetical protein ypo3708 ypo3708 or y0036 SWALL:AAM83631 (EMBL:AJ414158) (172 aa) fasta scores: E(): 9.6e-60, 81.39% id in 172 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA3428 (99.419% identity in 172aa overlap) and ECA2866 (94.767% identity in 172aa overlap).; hypothetical protein 4790053..4790571 Pectobacterium atrosepticum SCRI1043 2882510 YP_052363.1 CDS ECA4276 NC_004547.2 4790693 4792522 D Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 3.4e-130, 53.79% id in 606 aa, and to Yersinia pestis rhs accessory genetic element ypo3606 or y0268 SWALL:AAM83862 (EMBL:AJ414158) (800 aa) fasta scores: E(): 2.2e-123, 51.03% id in 629 aa; Rhs-family protein 4790693..4792522 Pectobacterium atrosepticum SCRI1043 2882511 YP_052364.1 CDS ECA4277 NC_004547.2 4792551 4792997 D Similar to Photorhabdus luminescens Orf5 orf5 SWALL:AAN64197 (EMBL:AY144117) (139 aa) fasta scores: E(): 5.6e-26, 53.33% id in 135 aa, and to Escherichia coli O157:H7 hypothetical protein z0706 z0706 or ecs0606 SWALL:Q8XBY6 (EMBL:AE005236) (153 aa) fasta scores: E(): 1.6e-15, 41.54% id in 142 aa; hypothetical protein 4792551..4792997 Pectobacterium atrosepticum SCRI1043 2882512 YP_052365.1 CDS ECA4278 NC_004547.2 4792990 4797273 D Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.6e-127, 42.61% id in 1361 aa, and to Escherichia coli O157:H7 rhs core protein with extension ecs0605 SWALL:Q8X2J4 (EMBL:AP002552) (1616 aa) fasta scores: E(): 3.9e-80, 37.61% id in 1361 aa; Rhs-family protein 4792990..4797273 Pectobacterium atrosepticum SCRI1043 2882513 YP_052366.1 CDS ECA4279 NC_004547.2 4797274 4797585 D hypothetical protein 4797274..4797585 Pectobacterium atrosepticum SCRI1043 2881935 YP_052367.1 CDS ECA4280 NC_004547.2 4797653 4797877 R Similar to Yersinia pestis hypothetical y0261 SWALL:AAM83855 (EMBL:AE013626) (74 aa) fasta scores: E(): 1.4e-15, 60.81% id in 74 aa, and to Photorhabdus luminescens Orf8 orf8 SWALL:AAN64200 (EMBL:AY144117) (106 aa) fasta scores: E(): 1e-08, 52.17% id in 69 aa; hypothetical protein complement(4797653..4797877) Pectobacterium atrosepticum SCRI1043 2881936 YP_052368.1 CDS ECA4281 NC_004547.2 4797948 4798346 R Similar to Vibrio phage CTX RstR SWALL:Q8LTJ3 (EMBL:AF511000) (112 aa) fasta scores: E(): 2.7e-06, 33.63% id in 110 aa, and to Photorhabdus luminescens Orf9 SWALL:AAN64201 (EMBL:AY144117) (130 aa) fasta scores: E(): 1.5e-10, 34.42% id in 122 aa; phage regulatory protein complement(4797948..4798346) Pectobacterium atrosepticum SCRI1043 2881937 YP_052369.1 CDS ECA4282 NC_004547.2 4798448 4801366 D Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 1e-213, 73.54% id in 926 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 1.8e-13, 27.62% id in 438 aa. Also similar to ECA3390, (79.939% id), ECA3400 (84.394% id), ECA3407 (87.010% id), ECA3416 (87.010% id), and to ECA4291 (100.000% id).; DnaG primase-like protein 4798448..4801366 Pectobacterium atrosepticum SCRI1043 2881640 YP_052370.1 CDS xerC NC_004547.2 4801426 4802478 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4801426..4802478 Pectobacterium atrosepticum SCRI1043 2881641 YP_052371.1 CDS ECA4284 NC_004547.2 4802505 4802723 D hypothetical protein 4802505..4802723 Pectobacterium atrosepticum SCRI1043 2881642 YP_052372.1 CDS ECA4285 NC_004547.2 4802781 4803176 D hypothetical protein 4802781..4803176 Pectobacterium atrosepticum SCRI1043 2882024 YP_052373.1 CDS ECA4286 NC_004547.2 4803225 4803392 D hypothetical protein 4803225..4803392 Pectobacterium atrosepticum SCRI1043 2882025 YP_052374.1 CDS ECA4287 NC_004547.2 4803540 4803905 D hypothetical protein 4803540..4803905 Pectobacterium atrosepticum SCRI1043 2882026 YP_052375.1 CDS ECA4288 NC_004547.2 4803906 4804217 D hypothetical protein 4803906..4804217 Pectobacterium atrosepticum SCRI1043 2882027 YP_052376.1 CDS ECA4289 NC_004547.2 4804285 4804509 R Similar to Yersinia pestis hypothetical y0261 SWALL:AAM83855 (EMBL:AE013626) (74 aa) fasta scores: E(): 1.4e-15, 60.81% id in 74 aa, and to Photorhabdus luminescens Orf8 SWALL:AAN64200 (EMBL:AY144117) (106 aa) fasta scores: E(): 1e-08, 52.17% id in 69 aa; hypothetical protein complement(4804285..4804509) Pectobacterium atrosepticum SCRI1043 2881628 YP_052377.1 CDS ECA4290 NC_004547.2 4804580 4804978 R Similar to Vibrio phage CTX RstR SWALL:Q8LTJ3 (EMBL:AF511000) (112 aa) fasta scores: E(): 2.7e-06, 33.63% id in 110 aa, and to Photorhabdus luminescens Orf9 SWALL:AAN64201 (EMBL:AY144117) (130 aa) fasta scores: E(): 1.5e-10, 34.42% id in 122 aa; phage regulatory protein complement(4804580..4804978) Pectobacterium atrosepticum SCRI1043 2881629 YP_052378.1 CDS ECA4291 NC_004547.2 4805080 4807998 D Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 1e-213, 73.54% id in 926 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 1.8e-13, 27.62% id in 438 aa. Also similar to ECA3390, (79.939% id), ECA3400 (84.394% id), ECA3407 (87.010% id), ECA3416 (87.010% id), and to ECA4282 (100.000% id).; DnaG primase-like protein 4805080..4807998 Pectobacterium atrosepticum SCRI1043 2881630 YP_052379.1 CDS xerC NC_004547.2 4808058 4809110 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4808058..4809110 Pectobacterium atrosepticum SCRI1043 2881502 YP_052380.1 CDS ECA4293 NC_004547.2 4810142 4810594 D Similar to the C-terminal region of Bacillus halodurans hypothetical protein Bh2341 SWALL:Q9KAE6 (EMBL:AP001515) (271 aa) fasta scores: E(): 4.2e-21, 51.66% id in 120 aa; hypothetical protein 4810142..4810594 Pectobacterium atrosepticum SCRI1043 2881503 YP_052381.1 CDS ECA4294 NC_004547.2 4810594 4811115 D Similar to Clostridium acetobutylicum hypothetical cf-21 family protein Cac0348 SWALL:Q97M52 (EMBL:AE007549) (164 aa) fasta scores: E(): 0.37, 24.24% id in 165 aa; hypothetical protein 4810594..4811115 Pectobacterium atrosepticum SCRI1043 2881504 YP_052382.1 CDS ECA4295 NC_004547.2 4811200 4811412 R Similar to Yersinia pestis hypothetical y0261 SWALL:Q8CLT6 (EMBL:AE013626) (74 aa) fasta scores: E(): 1.4e-10, 60.34% id in 58 aa, and to Photorhabdus luminescens Orf8 SWALL:Q8GDM5 (EMBL:AY144117) (106 aa) fasta scores: E(): 0.0069, 49.05% id in 53 aa; hypothetical protein complement(4811200..4811412) Pectobacterium atrosepticum SCRI1043 2881505 YP_052383.1 CDS atsC NC_004547.2 4811680 4812444 R Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 (EMBL:AF126201) (287 aa) fasta scores: E(): 3.8e-47, 57.02% id in 242 aa, and to Bacillus subtilis aliphatic sulfonates transport ATP-binding protein SsuB SWALL:SSUB_BACSU (SWALL:P97027) (274 aa) fasta scores: E(): 1.1e-35, 45.88% id in 231 aa; sulfate ester ABC transporter ATP-binding protein complement(4811680..4812444) Pectobacterium atrosepticum SCRI1043 2881976 YP_052384.1 CDS astB NC_004547.2 4812441 4814072 R Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 2e-89, 51.46% id in 513 aa, and to Bacillus subtilis aliphatic sulfonates transport permease protein SsuC ssuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 2.1e-26, 36.82% id in 239 aa; sulfate ester ABC transporter permease complement(4812441..4814072) Pectobacterium atrosepticum SCRI1043 2882890 YP_052385.1 CDS ECA4298 NC_004547.2 4814072 4814473 R Similar to Neisseria meningitidis biopolymer transport ExbD protein ExbD or nma1983 or nmb1728 SWALL:EXBD_NEIMA (SWALL:P95376) (144 aa) fasta scores: E(): 3.9e-13, 38.57% id in 140 aa, and to Pseudomonas aeruginosa ExbD or ExbD1 or pa0199 SWALL:Q9RMT1 (EMBL:AF190125) (133 aa) fasta scores: E(): 1.8e-24, 55.63% id in 133 aa; biopolymer transport protein complement(4814072..4814473) Pectobacterium atrosepticum SCRI1043 2884833 YP_052386.1 CDS ECA4299 NC_004547.2 4814475 4815197 R Similar to Neisseria meningitidis biopolymer transport ExbB protein ExbB or nma1984 or nmb1729 SWALL:EXBB_NEIMA (SWALL:P57027) (220 aa) fasta scores: E(): 4.3e-20, 40.3% id in 196 aa, and to Pseudomonas aeruginosa ExbB or ExbB1 or pa0198 SWALL:Q9RMT2 (EMBL:AF190125) (239 aa) fasta scores: E(): 2.1e-44, 58.57% id in 239 aa; biopolymer transport protein complement(4814475..4815197) Pectobacterium atrosepticum SCRI1043 2884834 YP_052387.1 CDS tonB NC_004547.2 4815202 4816065 R Similar to Pseudomonas aeruginosa TonB2 protein TonB2 or pa0197 SWALL:Q9RMT3 (EMBL:AF190125) (270 aa) fasta scores: E(): 6.3e-17, 43.79% id in 290 aa, and to Bordetella bronchiseptica TonB SWALL:Q9ZG18 (EMBL:AF087669) (268 aa) fasta scores: E(): 5.5e-09, 33.2% id in 265 aa; TonB protein complement(4815202..4816065) Pectobacterium atrosepticum SCRI1043 2884260 YP_052388.1 CDS atsR NC_004547.2 4816504 4817511 D Similar to Pseudomonas aeruginosa sulfate ester binding protein AstR or pa0186 SWALL:O33416 (EMBL:Z48540) (353 aa) fasta scores: E(): 2.4e-58, 51.18% id in 338 aa, and to Pseudomonas putida AtsR WALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 9.8e-56, 49.85% id in 337 aa; sulfate ester binding protein 4816504..4817511 Pectobacterium atrosepticum SCRI1043 2882169 YP_052389.1 CDS sftP NC_004547.2 4817598 4819883 D Similar to Pseudomonas putida SftP SWALL:Q9R9W7 (EMBL:AF126201) (778 aa) fasta scores: E(): 5e-33, 37.71% id in 753 aa, and to Xanthomonas axonopodis TonB-dependent receptor FyuA or xac1143 SWALL:Q8PND0 (EMBL:AE011742) (804 aa) fasta scores: E(): 1.7e-22, 23.65% id in 782 aa; TonB-dependent receptor 4817598..4819883 Pectobacterium atrosepticum SCRI1043 2884396 YP_052390.1 CDS ECA4303 NC_004547.2 4819888 4822662 D Similar to Streptomyces coelicolor hypothetical protein sco1536 or scl2.26C SWALL:Q9L273 (EMBL:AL939109) (822 aa) fasta scores: E(): 4e-150, 48.64% id in 847 aa, and to Bacillus subtilis YetA protein SWALL:O31530 (EMBL:Z99107) (857 aa) fasta scores: E(): 4.1e-50, 34.15% id in 887 aa; hypothetical protein 4819888..4822662 Pectobacterium atrosepticum SCRI1043 2884835 YP_052391.1 CDS ECA4304 NC_004547.2 4822698 4823390 D hypothetical protein 4822698..4823390 Pectobacterium atrosepticum SCRI1043 2884625 YP_052392.1 CDS sftR NC_004547.2 4823377 4824306 R Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 6.9e-58, 50.82% id in 303 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein SdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 2.3e-29, 37.58% id in 314 aa; LysR family transcriptional regulator complement(4823377..4824306) Pectobacterium atrosepticum SCRI1043 2884398 YP_052393.1 CDS ECA4306 NC_004547.2 4824558 4824764 R hypothetical protein complement(4824558..4824764) Pectobacterium atrosepticum SCRI1043 2884626 YP_052394.1 CDS pfkA NC_004547.2 4824827 4825789 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(4824827..4825789) Pectobacterium atrosepticum SCRI1043 2885133 YP_052395.1 CDS fieF NC_004547.2 4825997 4826899 R member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F complement(4825997..4826899) Pectobacterium atrosepticum SCRI1043 2881441 YP_052396.1 CDS sotB NC_004547.2 4826943 4828130 R Similar to Erwinia chrysanthemi sugar efflux transporter B SotB SWALL:SOTB_ERWCH (SWALL:Q9S3J9) (395 aa) fasta scores: E(): 4.8e-85, 61.85% id in 388 aa, and to Escherichia coli sugar efflux transporter SotB or b1528 SWALL:SOTB_ECOLI (SWALL:P31122) (396 aa) fasta scores: E(): 1e-82, 61.55% id in 385 aa; sugar efflux transporter complement(4826943..4828130) Pectobacterium atrosepticum SCRI1043 2884370 YP_052397.1 CDS cpxP NC_004547.2 4828523 4829047 R Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri periplasmic protein cpxp precursor CpxP or b3913/b3914 or c4865 or sf3992 SWALL:CPXP_ECOLI (SWALL:P32158) (166 aa) fasta scores: E(): 6.2e-20, 50% id in 140 aa; stress resistance protein complement(4828523..4829047) Pectobacterium atrosepticum SCRI1043 2884944 YP_052398.1 CDS cpxR NC_004547.2 4829201 4829899 D response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR 4829201..4829899 Pectobacterium atrosepticum SCRI1043 2884945 YP_052399.1 CDS cpxA NC_004547.2 4829896 4831266 D part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 4829896..4831266 Pectobacterium atrosepticum SCRI1043 2884948 YP_052400.1 CDS ECA4313 NC_004547.2 4831431 4833599 D Similar to Pseudomonas aeruginosa hypothetical protein Pa5441 SWALL:Q9HTC5 (EMBL:AE004957) (733 aa) fasta scores: E(): 4.1e-70, 35.82% id in 748 aa, and to Yersinia pestis hypothetical protein ypo0870 or y3254 SWALL:Q8ZHM1 (EMBL:AJ414145) (774 aa) fasta scores: E(): 2.3e-94, 41.84% id in 736 aa; hypothetical protein 4831431..4833599 Pectobacterium atrosepticum SCRI1043 2884627 YP_052401.1 CDS ECA4314 NC_004547.2 4833608 4834378 D Similar to Yersinia pestis hypothetical y3253 SWALL:Q8CKN3 (EMBL:AE013927) (255 aa) fasta scores: E(): 2.6e-44, 48.56% id in 243 aa; hypothetical protein 4833608..4834378 Pectobacterium atrosepticum SCRI1043 2884585 YP_052402.1 CDS ECA4315 NC_004547.2 4834403 4834867 R Similar to Shewanella oneidensis RNA methyltransferase, TrmH family, group 2 so4529 SWALL:AAN57492 (EMBL:AE015885) (154 aa) fasta scores: E(): 1.6e-40, 73.33% id in 150 aa, and to Vibrio vulnificus predicted rRNA methylase vv11251 SWALL:AAO09707 (EMBL:AE016801) (157 aa) fasta scores: E(): 4.8e-36, 67.97% id in 153 aa; RNA-methyltransferase complement(4834403..4834867) Pectobacterium atrosepticum SCRI1043 2884586 YP_052403.1 CDS ECA4316 NC_004547.2 4835189 4835485 D hypothetical protein 4835189..4835485 Pectobacterium atrosepticum SCRI1043 2884587 YP_052404.1 CDS ECA4317 NC_004547.2 4835498 4836454 R Similar to Yersinia pestis membrane protein ypo3791 SWALL:Q8ZAL0 (EMBL:AJ414159) (308 aa) fasta scores: E(): 3.3e-84, 74.49% id in 298 aa, and to Bradyrhizobium japonicum Blr7387 protein blr7387 SWALL:BAC52652 (EMBL:AP005962) (314 aa) fasta scores: E(): 2.2e-23, 31.73% id in 312 aa; transporter complement(4835498..4836454) Pectobacterium atrosepticum SCRI1043 2884588 YP_052405.1 CDS ugpQ NC_004547.2 4836659 4837408 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase complement(4836659..4837408) Pectobacterium atrosepticum SCRI1043 2884205 YP_052406.1 CDS ugpC NC_004547.2 4837408 4838481 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(4837408..4838481) Pectobacterium atrosepticum SCRI1043 2884203 YP_052407.1 CDS ugpE NC_004547.2 4838507 4839358 R with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein complement(4838507..4839358) Pectobacterium atrosepticum SCRI1043 2884204 YP_052408.1 CDS ugpA NC_004547.2 4839379 4840266 R with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease complement(4839379..4840266) Pectobacterium atrosepticum SCRI1043 2884208 YP_052409.1 CDS ugpB NC_004547.2 4840339 4841673 R with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic-binding protein complement(4840339..4841673) Pectobacterium atrosepticum SCRI1043 2884209 YP_052410.1 CDS ECA4323 NC_004547.2 4841929 4842345 R Similar to Yersinia pestis hypothetical protein ypo1620 or y1780 SWALL:Q8ZFR8 (EMBL:AJ414149) (137 aa) fasta scores: E(): 5.7e-33, 60.58% id in 137 aa; hypothetical protein complement(4841929..4842345) Pectobacterium atrosepticum SCRI1043 2884788 YP_052411.1 CDS ECA4324 NC_004547.2 4842347 4843042 R Similar to Yersinia pestis hypothetical protein ypo1619 or y1779 SWALL:AAM85347 (EMBL:AJ414149) (189 aa) fasta scores: E(): 8.4e-51, 70.21% id in 188 aa, and to Escherichia coli O6 hypothetical protein c0078 SWALL:AAN78574 (EMBL:AE016755) (78 aa) fasta scores: E(): 0.00011, 43.42% id in 76 aa; hypothetical protein complement(4842347..4843042) Pectobacterium atrosepticum SCRI1043 2884789 YP_052412.1 CDS ECA4325 NC_004547.2 4843159 4843920 R Similar to Yersinia pestis orf40 ypo1938 or y2373 SWALL:Q9ZC48 (EMBL:AL031866) (256 aa) fasta scores: E(): 1.7e-68, 72.22% id in 252 aa, and to Escherichia coli hypothetical transcriptional regulator ygbi or b2735 SWALL:YGBI_ECOLI (SWALL:P52598) (265 aa) fasta scores: E(): 4.4e-58, 62.3% id in 252 aa; DeoR family transcriptional regulator complement(4843159..4843920) Pectobacterium atrosepticum SCRI1043 2884790 YP_052413.1 CDS ECA4326 NC_004547.2 4843917 4844132 R hypothetical protein complement(4843917..4844132) Pectobacterium atrosepticum SCRI1043 2884743 YP_052414.1 CDS ECA4327 NC_004547.2 4844257 4845171 D Similar to Escherichia coli hypothetical oxidoreductase ygbj or b2736 SWALL:YGBJ_ECOLI (SWALL:Q46888) (302 aa) fasta scores: E(): 1.3e-71, 73.75% id in 301 aa, and to Pasteurella multocida hypothetical protein Pm1366 SWALL:Q9CL76 (EMBL:AE006174) (301 aa) fasta scores: E(): 3.3e-75, 78.85% id in 298 aa; oxidoreductase 4844257..4845171 Pectobacterium atrosepticum SCRI1043 2884744 YP_052415.1 CDS ECA4328 NC_004547.2 4845168 4846442 D Similar to Escherichia coli O6 hypothetical protein ygbk or c3298 SWALL:AAN81747 (EMBL:AE016765) (420 aa) fasta scores: E(): 2.1e-101, 64.92% id in 422 aa, and to Brucella melitensis hypothetical protein Bmeii1091 SWALL:Q8YB10 (EMBL:AE009741) (436 aa) fasta scores: E(): 8.2e-93, 60.95% id in 420 aa; hypothetical protein 4845168..4846442 Pectobacterium atrosepticum SCRI1043 2884745 YP_052416.1 CDS ECA4329 NC_004547.2 4846439 4847095 D Similar to Escherichia coli hypothetical aldolase class II protein ygbl or b2738 SWALL:YGBL_ECOLI (SWALL:Q46890) (212 aa) fasta scores: E(): 3.3e-60, 74.38% id in 203 aa, and to Salmonella typhimurium, and Salmonella typhi fuculose phosphate aldolase ygbl or stm2916 or sty3041 SWALL:Q8XER3 (EMBL:AE008833) (212 aa) fasta scores: E(): 3.9e-60, 73.43% id in 207 aa; aldolase 4846439..4847095 Pectobacterium atrosepticum SCRI1043 2884746 YP_052417.1 CDS ECA4330 NC_004547.2 4847113 4847901 D Similar to Escherichia coli hydroxypyruvate isomerase Hyi or Gip or b0508 SWALL:HYI_ECOLI (SWALL:P30147) (258 aa) fasta scores: E(): 9.4e-35, 39.29% id in 257 aa, and to Escherichia coli O6 hypothetical protein ygbm or c3300 SWALL:Q8FEK7 (EMBL:AE016765) (258 aa) fasta scores: E(): 2.3e-66, 63.03% id in 257 aa; isomerase 4847113..4847901 Pectobacterium atrosepticum SCRI1043 2881609 YP_052418.1 CDS gntP NC_004547.2 4848093 4849451 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; inner membrane permease YgbN 4848093..4849451 Pectobacterium atrosepticum SCRI1043 2881585 YP_052419.1 CDS ECA4332 NC_004547.2 4849738 4851417 D Similar to Ralstonia solanacearum methyl-accepting chemotaxis I CheD4 or rsc3412 or rs01721 SWALL:Q8XTY3 (EMBL:AL646075) (515 aa) fasta scores: E(): 1.5e-52, 43.48% id in 522 aa, and to Rahnella aquatilis methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 1.2e-51, 37.39% id in 567 aa; methyl-accepting chemotaxis protein 4849738..4851417 Pectobacterium atrosepticum SCRI1043 2881610 YP_052420.1 CDS ECA4333 NC_004547.2 4851698 4853368 D Similar to Rahnella aquatilis methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 7.1e-54, 38.01% id in 555 aa, and to Ralstonia solanacearum methyl-accepting chemotaxis I CheD4 or rsc3412 or rs01721 SWALL:Q8XTY3 (EMBL:AL646075) (515 aa) fasta scores: E(): 1.8e-50, 42.05% id in 516 aa; methyl-accepting chemotaxis protein 4851698..4853368 Pectobacterium atrosepticum SCRI1043 2881611 YP_052421.1 CDS ECA4334 NC_004547.2 4854078 4855748 D Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 8e-53, 40.14% id in 558 aa, and to Rahnella aquatilis methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 2.9e-56, 38.35% id in 558 aa; methyl-accepting chemotaxis protein 4854078..4855748 Pectobacterium atrosepticum SCRI1043 2882205 YP_052422.1 CDS ECA4335 NC_004547.2 4856341 4857987 D Similar to Rahnella aquatilis methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 1.1e-57, 39.06% id in 558 aa, and to Ralstonia solanacearum probable methyl-accepting chemotaxis transducer transmembrane protein rsp1363 or rs04782 SWALL:Q8XQC3 (EMBL:AL646084) (543 aa) fasta scores: E(): 1.4e-55, 39.45% id in 550 aa; methyl-accepting chemotaxis protein 4856341..4857987 Pectobacterium atrosepticum SCRI1043 2882206 YP_052423.1 CDS ECA4336 NC_004547.2 4858077 4859267 R Similar to Pyrococcus abyssi aminotransferase pyrab01920 or pab2227 SWALL:Q9V282 (EMBL:AJ248283) (410 aa) fasta scores: E(): 1.7e-51, 40% id in 395 aa, and to Myxococcus xanthus aminotransferase protein SWALL:Q8KM38 (EMBL:AJ505751) (406 aa) fasta scores: E(): 5.6e-50, 39.94% id in 388 aa; aminotransferase complement(4858077..4859267) Pectobacterium atrosepticum SCRI1043 2882207 YP_052424.1 CDS livF NC_004547.2 4859297 4859998 R with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(4859297..4859998) Pectobacterium atrosepticum SCRI1043 2883065 YP_052425.1 CDS livG NC_004547.2 4860004 4860774 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(4860004..4860774) Pectobacterium atrosepticum SCRI1043 2883066 YP_052426.1 CDS livM NC_004547.2 4860771 4862045 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(4860771..4862045) Pectobacterium atrosepticum SCRI1043 2883039 YP_052427.1 CDS livH NC_004547.2 4862042 4862968 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH complement(4862042..4862968) Pectobacterium atrosepticum SCRI1043 2883067 YP_052428.1 CDS livK NC_004547.2 4863125 4864237 R Similar to Escherichia coli leucine-specific binding protein precursor LivK or b3458 SWALL:LIVK_ECOLI (SWALL:P04816) (369 aa) fasta scores: E(): 9e-104, 75.27% id in 364 aa; leucine-specific binding protein complement(4863125..4864237) Pectobacterium atrosepticum SCRI1043 2883068 YP_052429.1 CDS ECA4342 NC_004547.2 4864642 4865088 D Similar to Yersinia pestis acetyltransferase ypo3809 SWALL:Q8ZAJ2 (EMBL:AJ414159) (130 aa) fasta scores: E(): 4.7e-22, 53.48% id in 129 aa, and to Salmonella typhimurium, and Salmonella typhi acetyltransferase yhhk or stm3565 or sty4247 SWALL:Q8XFZ9 (EMBL:AE008864) (127 aa) fasta scores: E(): 1.8e-17, 48.43% id in 128 aa; acetyltransferase 4864642..4865088 Pectobacterium atrosepticum SCRI1043 2884069 YP_052430.1 CDS rpoH NC_004547.2 4865178 4866035 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(4865178..4866035) Pectobacterium atrosepticum SCRI1043 2884484 YP_052431.1 CDS ftsX NC_004547.2 4866367 4867335 R ABC transporter, membrane protein; cell division protein FtsX complement(4866367..4867335) Pectobacterium atrosepticum SCRI1043 2883560 YP_052432.1 CDS ftsE NC_004547.2 4867325 4867996 R ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division protein FtsE complement(4867325..4867996) Pectobacterium atrosepticum SCRI1043 2884012 YP_052433.1 CDS ftsY NC_004547.2 4868002 4869411 R signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY complement(4868002..4869411) Pectobacterium atrosepticum SCRI1043 2883480 YP_052434.1 CDS rsmD NC_004547.2 4869761 4870336 D catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 4869761..4870336 Pectobacterium atrosepticum SCRI1043 2884070 YP_052435.1 CDS ECA4348 NC_004547.2 4870363 4870641 D Similar to Yersinia pestis membrane protein ypo3816a or y0414 SWALL:Q8ZAI5 (EMBL:AJ414159) (90 aa) fasta scores: E(): 1.2e-22, 71.59% id in 88 aa, and to Shigella flexneri orf, conserved hypothetical protein yhhl or sf3484 SWALL:AAN44943 (EMBL:AE015356) (90 aa) fasta scores: E(): 5.6e-22, 69.41% id in 85 aa; hypothetical protein 4870363..4870641 Pectobacterium atrosepticum SCRI1043 2884071 YP_052436.1 CDS ECA4349 NC_004547.2 4870645 4871004 R Similar to Escherichia coli O6 hypothetical protein yhhm or c4260 SWALL:AAN82696 (EMBL:AE016768) (119 aa) fasta scores: E(): 2.6e-12, 38.65% id in 119 aa, and to Salmonella typhimurium inner membrane protein yhhm or stm3574 SWALL:Q8ZLE6 (EMBL:AE008864) (123 aa) fasta scores: E(): 3.2e-12, 39.65% id in 116 aa; hypothetical protein complement(4870645..4871004) Pectobacterium atrosepticum SCRI1043 2884072 YP_052437.1 CDS ECA4350 NC_004547.2 4871004 4871324 R Similar to Yersinia pestis hypothetical protein ypo3818 or y0412 SWALL:Q8ZAI3 (EMBL:AJ414159) (106 aa) fasta scores: E(): 2.2e-32, 82.07% id in 106 aa, and to Pseudomonas putida conserved hypothetical protein pp4786 SWALL:AAN70355 (EMBL:AE016792) (108 aa) fasta scores: E(): 3.6e-16, 46.15% id in 104 aa; hypothetical protein complement(4871004..4871324) Pectobacterium atrosepticum SCRI1043 2884589 YP_052438.1 CDS ECA4351 NC_004547.2 4871506 4872135 D Similar to Yersinia pestis membrane protein ypo3819 or y0411 SWALL:Q8ZAI2 (EMBL:AJ414159) (208 aa) fasta scores: E(): 7e-55, 66.98% id in 209 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane protein yhhn or stm3575 or sty4236 SWALL:Q8XH18 (EMBL:AE008864) (208 aa) fasta scores: E(): 5.2e-51, 63.63% id in 209 aa; hypothetical protein 4871506..4872135 Pectobacterium atrosepticum SCRI1043 2884590 YP_052439.1 CDS zntA NC_004547.2 4872230 4874593 D P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 4872230..4874593 Pectobacterium atrosepticum SCRI1043 2882471 YP_052440.1 CDS sirA NC_004547.2 4874828 4875073 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(4874828..4875073) Pectobacterium atrosepticum SCRI1043 2884391 YP_052441.1 CDS ECA4354 NC_004547.2 4875290 4875967 D Similar to Yersinia pestis membrane protein ypo3822 SWALL:Q8ZAH9 (EMBL:AJ414159) (222 aa) fasta scores: E(): 4.1e-68, 77.56% id in 214 aa, and to Shigella flexneri orf, conserved hypothetical protein yhhq or sf3489 SWALL:AAN44948 (EMBL:AE015357) (221 aa) fasta scores: E(): 1.2e-65, 75.47% id in 212 aa; hypothetical protein 4875290..4875967 Pectobacterium atrosepticum SCRI1043 2884591 YP_052442.1 CDS dcrB NC_004547.2 4876119 4876685 D Similar to Escherichia coli, and Shigella flexneri dcrb protein precursor DcrB or b3472 or sf3490 SWALL:DCRB_ECOLI (SWALL:P37620) (185 aa) fasta scores: E(): 2.8e-37, 61.9% id in 189 aa, and to Salmonella typhimurium, and Salmonella typhi inner membrane lipoprotein stm3580 or sty4231 SWALL:Q8XFQ6 (EMBL:AE008865) (185 aa) fasta scores: E(): 7.2e-38, 63.83% id in 188 aa; hypothetical protein 4876119..4876685 Pectobacterium atrosepticum SCRI1043 2884885 YP_052443.1 CDS ECA4356 NC_004547.2 4877184 4879178 D No significant database matches. Strongly similar to ECA2106 (88.084% id) and ECA4431 (87.783% id) and; hypothetical protein 4877184..4879178 Pectobacterium atrosepticum SCRI1043 2885767 YP_052444.1 CDS ECA4357 NC_004547.2 4879178 4879885 D Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 8.6e-29, 41.35% id in 237 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 3.6e-27, 42.92% id in 226 aa. Also similar to ECA2107 (77.637% id), ECA2108 (75.949% id), ECA2109 (87.234% id) and ECA4430 (75.527% id).; lipoprotein 4879178..4879885 Pectobacterium atrosepticum SCRI1043 2885768 YP_052445.1 CDS ECA4358 NC_004547.2 4880005 4881213 R Similar to Escherichia coli hypothetical protein yhhs or b3473 SWALL:YHHS_ECOLI (SWALL:P37621) (419 aa) fasta scores: E(): 3.3e-102, 70.88% id in 395 aa, and to Pseudomonas putida membrane protein, pp4492 SWALL:AAN70067 (EMBL:AE016790) (400 aa) fasta scores: E(): 1.4e-70, 52.68% id in 391 aa; major facilitator superfamily transporter complement(4880005..4881213) Pectobacterium atrosepticum SCRI1043 2885769 YP_052446.1 CDS ECA4359 NC_004547.2 4881331 4882347 D Similar to Yersinia pestis membrane protein ypo3985 or y3844 SWALL:Q8ZA35 (EMBL:AJ414160) (360 aa) fasta scores: E(): 1.1e-91, 72.37% id in 333 aa, and to Erwinia chrysanthemi hypothetical 36.0 kDa protein in kdgk 5'region SWALL:YHJD_ERWCH (SWALL:P45417) (328 aa) fasta scores: E(): 2.8e-88, 70.65% id in 334 aa; hypothetical protein 4881331..4882347 Pectobacterium atrosepticum SCRI1043 2885770 YP_052447.1 CDS kdgK NC_004547.2 4882515 4883447 D Similar to Erwinia chrysanthemi 2-dehydro-3-deoxygluconokinase KdgK SWALL:KDGK_ERWCH (SWALL:P45416) (310 aa) fasta scores: E(): 1.4e-100, 82.25% id in 310 aa; 2-dehydro-3-deoxygluconokinase 4882515..4883447 Pectobacterium atrosepticum SCRI1043 2885181 YP_052448.1 CDS ECA4361 NC_004547.2 4883526 4885022 R Similar to Yersinia pestis insulinase family protease ypo3991 or y3837 SWALL:AAM87382 (EMBL:AJ414160) (499 aa) fasta scores: E(): 1.5e-117, 63.56% id in 494 aa, and to Escherichia coli protein yhjj precursor yhjj or b3527 SWALL:YHJJ_ECOLI (SWALL:P37648) (498 aa) fasta scores: E(): 1.7e-106, 55.51% id in 499 aa; peptidase complement(4883526..4885022) Pectobacterium atrosepticum SCRI1043 2884888 YP_052449.1 CDS dctA NC_004547.2 4885383 4886675 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(4885383..4886675) Pectobacterium atrosepticum SCRI1043 2884886 YP_052450.1 CDS ECA4363 NC_004547.2 4886993 4888174 R Similar to Yersinia pestis membrane protein ypo3996 SWALL:Q8ZA24 (EMBL:AJ414160) (671 aa) fasta scores: E(): 4.1e-57, 47.29% id in 406 aa, and to Escherichia coli O6 protein yhjk yhjk or c4341 SWALL:AAN82777 (EMBL:AE016768) (662 aa) fasta scores: E(): 3.8e-47, 41.35% id in 399 aa; hypothetical protein complement(4886993..4888174) Pectobacterium atrosepticum SCRI1043 2884889 YP_052451.1 CDS ECA4364 NC_004547.2 4888643 4890289 R Similar to Salmonella typhimurium, and Salmonella typhi inner membrane protein yhju or stm3624 or sty4176 or bcsG SWALL:Q8XFY5 (EMBL:AE008867) (559 aa) fasta scores: E(): 5.6e-96, 62.61% id in 559 aa, and to Escherichia coli O6 hypothetical protein yhju or c4350 SWALL:AAN82786 (EMBL:AE016768) (559 aa) fasta scores: E(): 1.3e-92, 61.41% id in 552 aa; hypothetical protein complement(4888643..4890289) Pectobacterium atrosepticum SCRI1043 2884890 YP_052452.1 CDS ECA4365 NC_004547.2 4890291 4890512 R Similar to Salmonella typhimurium, and Salmonella typhi inner membrane protein yhjt or stm3623 or sty4177 or bcsF SWALL:Q8XGR3 (EMBL:AE008867) (63 aa) fasta scores: E(): 0.0021, 40% id in 60 aa, and to Shigella flexneri orf, conserved hypothetical protein yhjt or sf3569 SWALL:AAN45020 (EMBL:AE015365) (63 aa) fasta scores: E(): 0.0065, 34.42% id in 61 aa; hypothetical protein complement(4890291..4890512) Pectobacterium atrosepticum SCRI1043 2884891 YP_052453.1 CDS ECA4366 NC_004547.2 4890509 4891822 R Similar to Salmonella typhi hypothetical protein Sty4178 SWALL:Q8Z293 (EMBL:AL627281) (523 aa) fasta scores: E(): 3.7e-67, 44.09% id in 381 aa, and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 1.6e-66, 44.97% id in 378 aa; hypothetical protein complement(4890509..4891822) Pectobacterium atrosepticum SCRI1043 2884545 YP_052454.1 CDS ECA4367 NC_004547.2 4891859 4892083 R Similar to the N-terminal regions of Salmonella typhimurium cytoplasmic protein yhjs or stm3622 or bcsE SWALL:Q8ZLB5 (EMBL:AE008867) (523 aa) fasta scores: E(): 2.4e-06, 53.84% id in 52 aa, and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 9.7e-05, 47.05% id in 51 aa; hypothetical protein complement(4891859..4892083) Pectobacterium atrosepticum SCRI1043 2884546 YP_052455.1 CDS ECA4368 NC_004547.2 4892409 4892618 D Similar to Salmonella typhimurium, and Salmonella typhi yhjr protein yhjr or stm3621 or sty4179 SWALL:Q93IN4 (EMBL:AJ315770) (67 aa) fasta scores: E(): 4.9e-06, 43.86% id in 57 aa, and to Escherichia coli hypothetical protein yhjr or b3535 SWALL:YHJR_ECOLI (SWALL:P37656) (62 aa) fasta scores: E(): 0.00042, 46.34% id in 41 aa; hypothetical protein 4892409..4892618 Pectobacterium atrosepticum SCRI1043 2884547 YP_052456.1 CDS ECA4369 NC_004547.2 4892621 4893358 D Similar to Salmonella typhi hypothetical protein yhjq or sty4180 SWALL:Q8Z292 (EMBL:AL627281) (250 aa) fasta scores: E(): 7.1e-50, 51.22% id in 246 aa, and to Escherichia coli O6 hypothetical protein yhjq or c4346 SWALL:AAN82782 (EMBL:AE016768) (250 aa) fasta scores: E(): 4.3e-49, 51.04% id in 239 aa; hypothetical protein 4892621..4893358 Pectobacterium atrosepticum SCRI1043 2885425 YP_052457.1 CDS bcsB NC_004547.2 4896128 4898422 D binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 4896128..4898422 Pectobacterium atrosepticum SCRI1043 2882021 YP_052458.1 CDS bcsZ NC_004547.2 4898429 4899544 D catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 4898429..4899544 Pectobacterium atrosepticum SCRI1043 2882023 YP_052459.2 CDS bcsC NC_004547.2 4900537 4904106 D cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 4900537..4904106 Pectobacterium atrosepticum SCRI1043 2882022 YP_052460.1 CDS ECA4375 NC_004547.2 4904113 4905171 R Similar to Pseudomonas putida transcriptional regulator, AraC family pp4508 SWALL:AAN70082 (EMBL:AE016790) (353 aa) fasta scores: E(): 2e-22, 29.16% id in 336 aa, and to Pseudomonas alcaligenes virulence regulating homolog SWALL:Q9ZFW7 (EMBL:AF092918) (346 aa) fasta scores: E(): 1.1e-21, 28.24% id in 347 aa; AraC family transcriptional regulator complement(4904113..4905171) Pectobacterium atrosepticum SCRI1043 2885426 YP_052461.1 CDS ECA4376 NC_004547.2 4905344 4906351 R Similar to Rhizobium loti hypothetical protein Mlr6716 SWALL:Q988J5 (EMBL:AP003009) (335 aa) fasta scores: E(): 1.8e-46, 40.72% id in 329 aa, and to Agrobacterium tumefaciens hypothetical protein atu5252 or agr_pat_360 SWALL:Q8UK71 (EMBL:AE008947) (355 aa) fasta scores: E(): 9.2e-44, 41.52% id in 301 aa; hypothetical protein complement(4905344..4906351) Pectobacterium atrosepticum SCRI1043 2885427 YP_052462.1 CDS ECA4377 NC_004547.2 4906610 4907971 D Similar to Xanthomonas campestris ethanolamin permease EutP or xcc2259 SWALL:Q8P8I2 (EMBL:AE012333) (454 aa) fasta scores: E(): 8.6e-135, 76.99% id in 439 aa, and to Burkholderia pseudomallei permease lpw119 SWALL:Q93TX8 (EMBL:AF312940) (469 aa) fasta scores: E(): 9.3e-122, 71.81% id in 440 aa; ethanolamin permease 4906610..4907971 Pectobacterium atrosepticum SCRI1043 2885428 YP_052463.1 CDS ECA4378 NC_004547.2 4908005 4909348 D Similar to Rhizobium meliloti aminotransferase ra0973 or sma1761 SWALL:Q92YB1 (EMBL:AE007283) (438 aa) fasta scores: E(): 1.2e-86, 51.61% id in 434 aa, and to Agrobacterium tumefaciens pyridoxal phosphate aminotransferase atu5251 or agr_pat_358 SWALL:Q8UK72 (EMBL:AE008947) (464 aa) fasta scores: E(): 6.4e-78, 47.85% id in 443 aa; aminotransferase 4908005..4909348 Pectobacterium atrosepticum SCRI1043 2885495 YP_052464.1 CDS ggt NC_004547.2 4909444 4911222 R Similar to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt or b3447 SWALL:GGT_ECOLI (SWALL:P18956) (580 aa) fasta scores: E(): 2.3e-93, 46.93% id in 571 aa, and to Pseudomonas sp. gamma-glutamyltranspeptidase precursor Ggt SWALL:GGT_PSESP (SWALL:P36267) (575 aa) fasta scores: E(): 1.2e-114, 56.17% id in 591 aa; gamma-glutamyltranspeptidase complement(4909444..4911222) Pectobacterium atrosepticum SCRI1043 2882455 YP_052465.1 CDS ECA4380 NC_004547.2 4911487 4912836 R Similar to Escherichia coli hypothetical transport protein yjjl or b4356 SWALL:YJJL_ECOLI (SWALL:P39398) (453 aa) fasta scores: E(): 4.2e-172, 91.17% id in 453 aa, and to Bacillus subtilis hexuronate transporter ExuT SWALL:EXUT_BACSU (SWALL:O34456) (422 aa) fasta scores: E(): 1e-42, 30.56% id in 409 aa; sugar transporter complement(4911487..4912836) Pectobacterium atrosepticum SCRI1043 2885496 YP_052466.1 CDS ECA4381 NC_004547.2 4913050 4913964 R Similar to Shigella flexneri yjjm gene product yjjm or sf4388 SWALL:AAN45804 (EMBL:AE015445) (304 aa) fasta scores: E(): 2.8e-109, 88.81% id in 304 aa, and to Escherichia coli hypothetical protein yjjm or b4357 SWALL:YJJM_ECOLI (SWALL:P39399) (268 aa) fasta scores: E(): 6.2e-95, 88.06% id in 268 aa; DNA-binding protein complement(4913050..4913964) Pectobacterium atrosepticum SCRI1043 2885497 YP_052467.1 CDS ECA4382 NC_004547.2 4914105 4915127 D Similar to Escherichia coli hypothetical zinc-type alcohol dehydrogenase-like protein yjjn or b4358 SWALL:YJJN_ECOLI (SWALL:P39400) (337 aa) fasta scores: E(): 2.4e-105, 85.16% id in 337 aa, and to Salmonella typhimurium zinc-binding dehydrogenase stm3082 SWALL:Q8ZM59 (EMBL:AE008841) (338 aa) fasta scores: E(): 6.5e-63, 53.84% id in 338 aa; zinc-binding dehydrogenase 4914105..4915127 Pectobacterium atrosepticum SCRI1043 2883892 YP_052468.1 CDS uxaB2 NC_004547.2 4915141 4916586 D catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase 4915141..4916586 Pectobacterium atrosepticum SCRI1043 2882733 YP_052469.1 CDS eamA NC_004547.2 4916662 4917573 R Similar to Escherichia coli probable amino acid metabolite efflux pump EamA or b1533 SWALL:EAMA_ECOLI (SWALL:P31125) (299 aa) fasta scores: E(): 9.6e-64, 60.66% id in 300 aa, and to Salmonella typhimurium probable amino acid metabolite efflux pump EamA or stm1517 SWALL:EAMA_SALTY (SWALL:Q56072) (299 aa) fasta scores: E(): 1.6e-65, 63.69% id in 303 aa; amino acid metabolite efflux pump complement(4916662..4917573) Pectobacterium atrosepticum SCRI1043 2882100 YP_052470.1 CDS ECA4385 NC_004547.2 4917730 4918947 R Similar to Escherichia coli O6 hypothetical protein c4013 SWALL:AAN82453 (EMBL:AE016767) (348 aa) fasta scores: E(): 4.5e-22, 30.65% id in 323 aa; hypothetical protein complement(4917730..4918947) Pectobacterium atrosepticum SCRI1043 2883893 YP_052471.1 CDS avtA NC_004547.2 4919331 4920581 D transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 4919331..4920581 Pectobacterium atrosepticum SCRI1043 2882170 YP_052472.1 CDS bglH NC_004547.2 4920702 4922174 R Similar to Erwinia chrysanthemi 6-phospho-beta-glucosidase ArbB SWALL:ARBB_ERWCH (SWALL:P26206) (465 aa) fasta scores: E(): 1.1e-93, 53.94% id in 482 aa, and to Bacillus subtilis beta-glucosidase BglH or n17D SWALL:BGL1_BACSU (SWALL:P40740) (469 aa) fasta scores: E(): 5e-106, 57.88% id in 482 aa. Also similar to ECA1871 (ArbB) (54.149% id), ECA0662 (51.837% id), ECA4432 (49.899% id), ECA2166 (49.689% id), ECA4407 (31.440% id), ECA0859 (38.277% id), ECA1451 (40.600% id) and to ECA3646 (28.630% id); beta-glucosidase complement(4920702..4922174) Pectobacterium atrosepticum SCRI1043 2882020 YP_052473.1 CDS ECA4388 NC_004547.2 4922195 4924099 R Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 6.6e-81, 37.57% id in 636 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 9.4e-80, 38.6% id in 632 aa; PTS system transporter subunit IIABC complement(4922195..4924099) Pectobacterium atrosepticum SCRI1043 2883894 YP_052474.1 CDS ECA4389 NC_004547.2 4924231 4925058 R Similar to Erwinia chrysanthemi beta-glucoside operon antiterminator ArbG SWALL:ARBG_ERWCH (SWALL:P26211) (283 aa) fasta scores: E(): 2.8e-45, 45.98% id in 274 aa, and to Bacillus subtilis transcription antiterminator LicT or n15A SWALL:LICT_BACSU (SWALL:P39805) (277 aa) fasta scores: E(): 2e-48, 46.54% id in 275 aa, and to Escherichia coli cryptic beta-glucoside bgl operon antiterminator BglG or BglC or b3723 SWALL:BGLG_ECOLI (SWALL:P11989) (278 aa) fasta scores: E(): 1.7e-39, 39.63% id in 275 aa; beta-glucoside operon antiterminator complement(4924231..4925058) Pectobacterium atrosepticum SCRI1043 2883895 YP_052475.1 CDS dppF NC_004547.2 4925484 4926494 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(4925484..4926494) Pectobacterium atrosepticum SCRI1043 2882215 YP_052476.1 CDS dppD NC_004547.2 4926491 4927471 R DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit complement(4926491..4927471) Pectobacterium atrosepticum SCRI1043 2882214 YP_052477.1 CDS dppC NC_004547.2 4927485 4928387 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 6e-98, 86.33% id in 300 aa; dipeptide transporter complement(4927485..4928387) Pectobacterium atrosepticum SCRI1043 2882404 YP_052478.1 CDS dppB NC_004547.2 4928401 4929420 R transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB complement(4928401..4929420) Pectobacterium atrosepticum SCRI1043 2882403 YP_052479.1 CDS dppA NC_004547.2 4929655 4931262 R Similar to Escherichia coli periplasmic dipeptide transport protein precursor DppA or b3544 SWALL:DPPA_ECOLI (SWALL:P23847) (535 aa) fasta scores: E(): 6.9e-186, 81.68% id in 535 aa; periplasmic dipeptide transport protein complement(4929655..4931262) Pectobacterium atrosepticum SCRI1043 2882402 YP_052480.1 CDS maeN NC_004547.2 4932696 4934039 D Similar to Bacillus subtilis Na(+)-malate symporter MaeN SWALL:MAEN_BACSU (SWALL:O05256) (448 aa) fasta scores: E(): 2.5e-95, 58.93% id in 414 aa; Na(+)-malate symporter 4932696..4934039 Pectobacterium atrosepticum SCRI1043 2881496 YP_052481.1 CDS ECA4396 NC_004547.2 4934120 4934395 R hypothetical protein complement(4934120..4934395) Pectobacterium atrosepticum SCRI1043 2883818 YP_052482.1 CDS ECA4397 NC_004547.2 4934379 4935272 R hypothetical protein complement(4934379..4935272) Pectobacterium atrosepticum SCRI1043 2883819 YP_052483.1 CDS dcuR NC_004547.2 4935389 4936111 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR complement(4935389..4936111) Pectobacterium atrosepticum SCRI1043 2884845 YP_052484.1 CDS dcuS NC_004547.2 4936104 4937762 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS complement(4936104..4937762) Pectobacterium atrosepticum SCRI1043 2884753 YP_052485.1 CDS ECA4400 NC_004547.2 4937906 4939318 R Similar to Spinacia oleracea 2-oxoglutarate/malate translocator, chloroplast precursor SodiT1 SWALL:SOT1_SPIOL (SWALL:Q41364) (569 aa) fasta scores: E(): 3e-87, 45.7% id in 466 aa, and to Vibrio vulnificus di-and tricarboxylate transporter vv20102 SWALL:AAO07076 (EMBL:AE016808) (467 aa) fasta scores: E(): 6e-127, 65.23% id in 466 aa; sodium:sulfate symporter complement(4937906..4939318) Pectobacterium atrosepticum SCRI1043 2883820 YP_052486.1 CDS ECA4401 NC_004547.2 4939844 4941502 R Similar to Yersinia pestis hypothetical membrane protein ypo4083 or y4100 SWALL:Y4I3_YERPE (SWALL:Q8Z9V7) (552 aa) fasta scores: E(): 2.4e-166, 80.07% id in 552 aa, and to Salmonella typhimurium hypothetical membrane protein yide or stm3807 SWALL:YIDE_SALTY (SWALL:Q8ZL04) (553 aa) fasta scores: E(): 5.2e-158, 76.5% id in 549 aa; hypothetical protein complement(4939844..4941502) Pectobacterium atrosepticum SCRI1043 2883766 YP_052487.1 CDS ibpB NC_004547.2 4941693 4942145 R 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock chaperone IbpB complement(4941693..4942145) Pectobacterium atrosepticum SCRI1043 2882903 YP_052488.1 CDS ibpA NC_004547.2 4942274 4942687 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA complement(4942274..4942687) Pectobacterium atrosepticum SCRI1043 2882902 YP_052489.1 CDS ECA4404 NC_004547.2 4943076 4943450 D Similar to Yersinia pestis lipoprotein ypo4086 or y4103 SWALL:Q8Z9V4 (EMBL:AJ414160) (112 aa) fasta scores: E(): 2.8e-19, 55.35% id in 112 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yidq precursor yidq or b3688 or sf3775 SWALL:YIDQ_ECOLI (SWALL:P31454) (110 aa) fasta scores: E(): 1.2e-15, 46.55% id in 116 aa; hypothetical protein 4943076..4943450 Pectobacterium atrosepticum SCRI1043 2883767 YP_052490.1 CDS ECA4405 NC_004547.2 4943487 4944773 R Similar to Salmonella typhi ATP/GTP-binding protein sty3967 SWALL:Q8Z2M0 (EMBL:AL627280) (408 aa) fasta scores: E(): 1.1e-44, 61.39% id in 417 aa, and to Escherichia coli hypothetical protein yidr or b3689 SWALL:YIDR_ECOLI (SWALL:P31455) (416 aa) fasta scores: E(): 7.8e-40, 61.08% id in 406 aa; hypothetical protein complement(4943487..4944773) Pectobacterium atrosepticum SCRI1043 2883768 YP_052491.1 CDS ECA4406 NC_004547.2 4945009 4945266 D Similar to Yersinia pestis exported protein ypo2521 or y1667 SWALL:Q8ZDN9 (EMBL:AJ414152) (86 aa) fasta scores: E(): 6.2e-12, 55.29% id in 85 aa, and to Salmonella typhimurium, and Salmonella typhi periplasmic protein ybij or stm0823 or sty0860 SWALL:Q8XFN7 (EMBL:AE008734) (86 aa) fasta scores: E(): 1.7e-11, 56.47% id in 85 aa; hypothetical protein 4945009..4945266 Pectobacterium atrosepticum SCRI1043 2883769 YP_052492.1 CDS ECA4407 NC_004547.2 4945446 4946843 R Similar to Salmonella typhimurium glycosyl hydrolase family stm3775 SWALL:Q8ZL24 (EMBL:AE008876) (460 aa) fasta scores: E(): 1.6e-161, 78.99% id in 457 aa, and to Bacillus subtilis hypothetical protein YdhP SWALL:O05508 (EMBL:D88802) (465 aa) fasta scores: E(): 8.1e-132, 64.05% id in 459 aa; glycosyl hydrolase complement(4945446..4946843) Pectobacterium atrosepticum SCRI1043 2883741 YP_052493.1 CDS ECA4408 NC_004547.2 4946869 4948191 R Similar to Lactobacillus casei PTS system, lactose-specific IIbc component LacE SWALL:PTLB_LACCA (SWALL:P24400) (577 aa) fasta scores: E(): 1.4e-42, 31.78% id in 431 aa, and to Vibrio vulnificus phosphotransferase system cellobiose-specific component IIc vv11483 SWALL:AAO09922 (EMBL:AE016801) (443 aa) fasta scores: E(): 5.4e-96, 49.88% id in 437 aa; PTS system transporter subunit EIIC complement(4946869..4948191) Pectobacterium atrosepticum SCRI1043 2883742 YP_052494.1 CDS ECA4409 NC_004547.2 4948188 4948499 R Similar to Bacillus stearothermophilus PTS system, cellobiose-specific IIb component celA SWALL:PTCB_BACST (SWALL:Q45399) (100 aa) fasta scores: E(): 9.2e-14, 50.52% id in 95 aa; PTS system cellobiose-specific transporter subunit IIB complement(4948188..4948499) Pectobacterium atrosepticum SCRI1043 2883743 YP_052495.1 CDS ssuA NC_004547.2 4948910 4949932 D part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic subunit SsuB the ATP-binding subunit and SsuC the permease; alkanesulfonate transporter substrate-binding subunit 4948910..4949932 Pectobacterium atrosepticum SCRI1043 2884345 YP_052496.1 CDS ssuD NC_004547.2 4949991 4951133 D catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 4949991..4951133 Pectobacterium atrosepticum SCRI1043 2884341 YP_052497.1 CDS ssuC NC_004547.2 4951144 4951938 D Similar to Escherichia coli aliphatic sulfonates transport permease protein SsuC or b0934 SWALL:SSUC_ECOLI (SWALL:P75851) (263 aa) fasta scores: E(): 2.5e-77, 78.59% id in 257 aa; aliphatic sulfonates transport permease 4951144..4951938 Pectobacterium atrosepticum SCRI1043 2884347 YP_052498.1 CDS ssuB NC_004547.2 4951935 4952735 D part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonates transporter ATP-binding subunit 4951935..4952735 Pectobacterium atrosepticum SCRI1043 2884346 YP_052499.1 CDS ECA4414 NC_004547.2 4952908 4953165 D Similar to Yersinia pestis exported protein ypo2521 or y1667 SWALL:Q8ZDN9 (EMBL:AJ414152) (86 aa) fasta scores: E(): 3.5e-15, 66.27% id in 86 aa, and to Salmonella typhimurium, and Salmonella typhi periplasmic protein ybij or stm0823 or sty0860 SWALL:Q8XFN7 (EMBL:AE008734) (86 aa) fasta scores: E(): 8.1e-14, 59.3% id in 86 aa; hypothetical protein 4952908..4953165 Pectobacterium atrosepticum SCRI1043 2883624 YP_052500.1 CDS dgoT NC_004547.2 4953274 4954563 R Similar to Escherichia coli, and Escherichia coli O6 D-galactonate transporter DgoT or b3691 or c4612 SWALL:DGOT_ECOLI (SWALL:P31457) (430 aa) fasta scores: E(): 2.1e-144, 83.72% id in 430 aa, and to Escherichia coli probable glucarate transporter GudP or b2789 SWALL:GUDP_ECOLI (SWALL:Q46916) (450 aa) fasta scores: E(): 1.5e-68, 41.62% id in 430 aa; D-galactonate transporter complement(4953274..4954563) Pectobacterium atrosepticum SCRI1043 2883363 YP_052501.1 CDS dgoA1 NC_004547.2 4955039 4956187 R Similar to the C-terminal region of Escherichia coli DgoA protein [includes: 2-dehydro-3-deoxyphosphogalactonate aldolase; galactonate dehydratase] DgoA or DgoD or b3692 SWALL:DGOA_ECOLI (SWALL:P31458) (587 aa) fasta scores: E(): 1.2e-130, 85.34% id in 382 aa, and similar, over the entire length, to Salmonella typhimurium galactonate dehydratase in bifunctional: 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase DgoA or stm3828 SWALL:Q8ZKZ1 (EMBL:AE008878) (382 aa) fasta scores: E(): 2.2e-130, 85.07% id in 382 aa; galactonate dehydratase complement(4955039..4956187) Pectobacterium atrosepticum SCRI1043 2883563 YP_052502.1 CDS dgoA2 NC_004547.2 4956184 4956801 R catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase complement(4956184..4956801) Pectobacterium atrosepticum SCRI1043 2883393 YP_052503.1 CDS dgoK NC_004547.2 4956785 4957681 R Similar to Escherichia coli 2-dehydro-3-deoxygalactonokinase DgoK or b3693 SWALL:DGOK_ECOLI (SWALL:P31459) (292 aa) fasta scores: E(): 3.5e-61, 54.76% id in 294 aa; 2-dehydro-3-deoxygalactonokinase complement(4956785..4957681) Pectobacterium atrosepticum SCRI1043 2883394 YP_052504.1 CDS dgoR NC_004547.2 4957678 4958376 R Similar to Escherichia coli galactonate operon transcriptional repressor DgoR or b3694/b3695 SWALL:DGOR_ECOLI (SWALL:P31460) (229 aa) fasta scores: E(): 6.9e-70, 80.61% id in 227 aa; GntR-family transcriptional regulator complement(4957678..4958376) Pectobacterium atrosepticum SCRI1043 2883395 YP_052505.1 CDS ECA4420 NC_004547.2 4958773 4960608 R Similar to Rhizobium loti ABC transporter ATP-binding protein mlr6287 SWALL:Q989T5 (EMBL:AP003008) (616 aa) fasta scores: E(): 1e-141, 65.67% id in 603 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein MoaD or atu4723 or agr_l_318 SWALL:Q8U6T3 (EMBL:AE009400) (642 aa) fasta scores: E(): 9.6e-143, 64.59% id in 610 aa; ABC transporter ATP-binding protein complement(4958773..4960608) Pectobacterium atrosepticum SCRI1043 2883625 YP_052506.1 CDS ECA4421 NC_004547.2 4960612 4961520 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 2.7e-36, 40.14% id in 274 aa, and to Ralstonia solanacearum probable dipeptide transmembrane ABC transporter protein DppC2 or rsc1883 or rs03443 SWALL:Q8XY80 (EMBL:AL646067) (311 aa) fasta scores: E(): 4.2e-68, 61.75% id in 285 aa; ABC transporter permease complement(4960612..4961520) Pectobacterium atrosepticum SCRI1043 2883626 YP_052507.1 CDS ECA4422 NC_004547.2 4961517 4962494 R Similar to Bacillus subtilis oligopeptide transport system permease protein AppB SWALL:APPB_BACSU (SWALL:P42062) (317 aa) fasta scores: E(): 2.2e-41, 37.46% id in 323 aa, and to Ralstonia solanacearum probable dipeptide transmembrane ABC transporter protein DppB2 or rsc1882 or rs03442 SWALL:Q8XY81 (EMBL:AL646067) (328 aa) fasta scores: E(): 4.7e-78, 61.12% id in 319 aa; ABC transporter permease complement(4961517..4962494) Pectobacterium atrosepticum SCRI1043 2883627 YP_052508.1 CDS ECA4423 NC_004547.2 4962494 4963465 R Similar to Rhizobium meliloti nucleoside hydrolase protein r00415 or smc01105 SWALL:Q92SI0 (EMBL:AL591783) (314 aa) fasta scores: E(): 1.3e-49, 47.74% id in 310 aa, and to Agrobacterium tumefaciens inosine-uridine preferring nucleoside hydrolase IunH or atu0374 or agr_c_654 SWALL:Q8UIC3 (EMBL:AE009008) (333 aa) fasta scores: E(): 2.5e-48, 44.37% id in 311 aa; nucleoside hydrolase complement(4962494..4963465) Pectobacterium atrosepticum SCRI1043 2883443 YP_052509.1 CDS ECA4424 NC_004547.2 4963467 4964420 R Similar to Rhizobium meliloti nucleoside hydrolase protein r00415 or smc01105 SWALL:Q92SI0 (EMBL:AL591783) (314 aa) fasta scores: E(): 6.6e-47, 46.32% id in 313 aa, and to Agrobacterium tumefaciens inosine-uridine preferring nucleoside hydrolase iunh or atu0374 or agr_c_654 SWALL:Q8UIC3 (EMBL:AE009008) (333 aa) fasta scores: E(): 4.3e-50, 49.83% id in 309 aa; nucleoside hydrolase protein complement(4963467..4964420) Pectobacterium atrosepticum SCRI1043 2883444 YP_052510.1 CDS ECA4425 NC_004547.2 4964540 4965424 R Similar to Bradyrhizobium japonicum Bll7272 protein bll7272 SWALL:BAC52537 (EMBL:AP005961) (291 aa) fasta scores: E(): 3.2e-70, 65.97% id in 288 aa, and to Pseudomonas aeruginosa probable dihydrodipicolinate synthetase pa0223 SWALL:Q9I6R5 (EMBL:AE004460) (293 aa) fasta scores: E(): 8.8e-24, 32.29% id in 288 aa; dihydrodipicolinate synthetase complement(4964540..4965424) Pectobacterium atrosepticum SCRI1043 2883445 YP_052511.1 CDS ECA4426 NC_004547.2 4965493 4967043 R Similar to Ralstonia solanacearum probable substrate-binding periplasmic rsc0044 or rs01867 SWALL:Q8Y3D6 (EMBL:AL646057) (530 aa) fasta scores: E(): 8.5e-82, 45.54% id in 516 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu5253 or agr_pat_361 SWALL:Q8UK70 (EMBL:AE008948) (545 aa) fasta scores: E(): 2.8e-65, 39.53% id in 516 aa; extracellular solute-binding protein complement(4965493..4967043) Pectobacterium atrosepticum SCRI1043 2883386 YP_052512.1 CDS ECA4427 NC_004547.2 4967186 4968082 D Similar to Agrobacterium tumefaciens regulatory protein NocR or atu6029 or agr_pti_70 SWALL:NOCR_AGRT5 (SWALL:Q00678) (300 aa) fasta scores: E(): 1.4e-28, 35.29% id in 289 aa, and to Rhizobium meliloti octopine catabolism/uptake operon regulatory protein OccR SWALL:OCCR_RHIME (SWALL:P72294) (297 aa) fasta scores: E(): 5.8e-23, 36.58% id in 287 aa; LysR family transcriptional regulator 4967186..4968082 Pectobacterium atrosepticum SCRI1043 2883387 YP_052513.1 CDS ECA4428 NC_004547.2 4968228 4969043 R YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase complement(4968228..4969043) Pectobacterium atrosepticum SCRI1043 2883388 YP_052514.1 CDS ECA4429 NC_004547.2 4969443 4969667 R Similar to the C-terminal region of Shewanella oneidensis issod4, transposase SWALL:AAN53461 (EMBL:AE015911) (400 aa) fasta scores: E(): 2.2e-14, 66.12% id in 62 aa, and to Yersinia pestis transposase SWALL:O68702 (EMBL:AF053946) (99 aa) fasta scores: E(): 4.9e-17, 77.41% id in 62 aa; transposase complement(4969443..4969667) Pectobacterium atrosepticum SCRI1043 2883389 YP_052515.1 CDS ECA4430 NC_004547.2 4969669 4970379 R Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 1.5e-30, 42.01% id in 238 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 7e-28, 42.22% id in 225 aa; lipoprotein complement(4969669..4970379) Pectobacterium atrosepticum SCRI1043 2883105 YP_052516.1 CDS ECA4431 NC_004547.2 4970379 4972373 R No significant database matches. Strongly similar to ECA2106 (87.651% id) and ECA4356 (87.783% id) and; hypothetical protein complement(4970379..4972373) Pectobacterium atrosepticum SCRI1043 2883106 YP_052517.1 CDS bglA NC_004547.2 4972974 4974416 R Similar to Escherichia coli 6-phospho-beta-glucosidase BglA or b2901 SWALL:BGLA_ECOLI (SWALL:Q46829) (479 aa) fasta scores: E(): 2.5e-159, 76.21% id in 475 aa, and to Bacillus subtilis 6-phospho-beta-glucosidase BglA SWALL:BGLA_BACSU (SWALL:P42973) (479 aa) fasta scores: E(): 3.2e-128, 62.18% id in 476 aa. Also similar to ECA1871 (ArbB) (53.669% id), ECA0662 (51.875% id), ECA4407 (32.500% id), ECA2166 (50.103% id), ECA4387 (49.899% id), ECA0859 (40.733% id), ECA1451 (39.754% id) and to ECA3646 (429.878% id); 6-phospho-beta-glucosidase complement(4972974..4974416) Pectobacterium atrosepticum SCRI1043 2882019 YP_052518.1 CDS ECA4433 NC_004547.2 4974429 4974776 R Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component celc or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 8e-14, 47.47% id in 99 aa; PTS system cellobiose-specific transporter subunit IIA complement(4974429..4974776) Pectobacterium atrosepticum SCRI1043 2883107 YP_052519.1 CDS ECA4434 NC_004547.2 4974766 4976079 R Similar to Streptococcus mutans PTS system, lactose-specific IIbc component lace or smu.1491 SWALL:PTLB_STRMU (SWALL:P50976) (568 aa) fasta scores: E(): 5.9e-45, 35.37% id in 441 aa, and to Vibrio cholerae PTS system, cellobiose-specific iic component vc1282 SWALL:Q9KSH4 (EMBL:AE004207) (446 aa) fasta scores: E(): 3.7e-98, 54.37% id in 423 aa; PTS system transporter subunit IIBC complement(4974766..4976079) Pectobacterium atrosepticum SCRI1043 2883006 YP_052520.1 CDS ECA4435 NC_004547.2 4976096 4976401 R Similar to Bacillus subtilis PTS system, lichenan-specific IIb component LicB or CelA SWALL:PTCB_BACSU (SWALL:P46318) (102 aa) fasta scores: E(): 1.5e-11, 48.95% id in 96 aa, and to Vibrio cholerae PTS system, cellobiose-specific iib component vc1281 SWALL:Q9KSH5 (EMBL:AE004207) (101 aa) fasta scores: E(): 4.4e-17, 53.46% id in 101 aa; PTS system transporter subunit IIB complement(4976096..4976401) Pectobacterium atrosepticum SCRI1043 2883007 YP_052521.1 CDS ECA4436 NC_004547.2 4976615 4977652 D Similar to Escherichia coli cryptic asc operon repressor AscG or b2714 SWALL:ASCG_ECOLI (SWALL:P24242) (336 aa) fasta scores: E(): 3.8e-74, 58.61% id in 331 aa, and to Salmonella typhimurium transcriptional regulator stm3012 SWALL:Q8ZMA3 (EMBL:AE008838) (340 aa) fasta scores: E(): 3.5e-60, 49.85% id in 335 aa; LacI family transcriptional regulator 4976615..4977652 Pectobacterium atrosepticum SCRI1043 2883008 YP_052522.1 CDS ECA4437 NC_004547.2 4977725 4978915 D Similar to Pseudomonas putida hypothetical protein pp2034 SWALL:AAN67648 (EMBL:AE016781) (419 aa) fasta scores: E(): 1.6e-73, 54.35% id in 390 aa, and to Bradyrhizobium japonicum Bll1005 protein bll1005 SWALL:BAC46270 (EMBL:AP005938) (402 aa) fasta scores: E(): 4.5e-66, 51.26% id in 394 aa; MFS efflux transporter 4977725..4978915 Pectobacterium atrosepticum SCRI1043 2883009 YP_052523.1 CDS gyrB NC_004547.2 4979023 4981440 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(4979023..4981440) Pectobacterium atrosepticum SCRI1043 2883510 YP_052524.1 CDS recF NC_004547.2 4981459 4982544 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(4981459..4982544) Pectobacterium atrosepticum SCRI1043 2885292 YP_052525.1 CDS dnaN NC_004547.2 4982594 4983694 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(4982594..4983694) Pectobacterium atrosepticum SCRI1043 2882237 YP_052526.1 CDS dnaA NC_004547.2 4983699 4985096 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(4983699..4985096) Pectobacterium atrosepticum SCRI1043 2882799 YP_052527.1 CDS ECA4442 NC_004547.2 4985355 4985720 R hypothetical protein complement(4985355..4985720) Pectobacterium atrosepticum SCRI1043 2883003 YP_052528.1 CDS rpmH NC_004547.2 4985770 4985910 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4985770..4985910 Pectobacterium atrosepticum SCRI1043 2883004 YP_052529.1 CDS rnpA NC_004547.2 4985929 4986288 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4985929..4986288 Pectobacterium atrosepticum SCRI1043 2885033 YP_052530.1 CDS ECA4445 NC_004547.2 4986512 4988146 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 4986512..4988146 Pectobacterium atrosepticum SCRI1043 2883005 YP_052531.1 CDS trmE NC_004547.2 4988276 4989640 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4988276..4989640 Pectobacterium atrosepticum SCRI1043 2884245 YP_052532.1 CDS ECA4447 NC_004547.2 4989709 4990275 D hypothetical protein 4989709..4990275 Pectobacterium atrosepticum SCRI1043 2882986 YP_052533.1 CDS ECA4448 NC_004547.2 4990460 4991356 D Similar to Vibrio metschnikovii Orfc273-5 orfc273-5 SWALL:AAN33038 (EMBL:AF530480) (278 aa) fasta scores: E(): 3e-23, 57.03% id in 128 aa, and to Zymomonas mobilis hypothetical 36.8 kDa protein SWALL:Q9Z668 (EMBL:AF102543) (318 aa) fasta scores: E(): 6.5e-13, 37.95% id in 137 aa; hypothetical protein 4990460..4991356 Pectobacterium atrosepticum SCRI1043 2882987 YP_052534.1 CDS ECA4449 NC_004547.2 4991421 4992272 R Similar to Escherichia coli hypothetical protein ytfg or b4211 SWALL:YTFG_ECOLI (SWALL:P39315) (286 aa) fasta scores: E(): 6e-61, 66.54% id in 278 aa, and to Yersinia pestis hypothetical protein ypo1645 or y1806 SWALL:Q8ZFP8 (EMBL:AJ414149) (285 aa) fasta scores: E(): 3.2e-65, 68.79% id in 282 aa; hypothetical protein complement(4991421..4992272) Pectobacterium atrosepticum SCRI1043 2882988 YP_052535.1 CDS ECA4450 NC_004547.2 4992373 4992792 D Similar to Escherichia coli, and Shigella flexneri hypothetical protein ytfh or b4212 or sf4275 SWALL:YTFH_ECOLI (SWALL:P39316) (126 aa) fasta scores: E(): 6.5e-28, 66.95% id in 115 aa, and to Salmonella typhimurium, and Salmonella typhi transcriptional regulator ytfh or stm4402 or sty4760 SWALL:Q8XGE7 (EMBL:AE008906) (128 aa) fasta scores: E(): 3.1e-27, 65.48% id in 113 aa; hypothetical protein 4992373..4992792 Pectobacterium atrosepticum SCRI1043 2882989 YP_052536.1 CDS hmsS NC_004547.2 4992909 4993331 R Similar to Yersinia pestis HmsS or ypo1954 or y2356 SWALL:P74989 (EMBL:U22837) (155 aa) fasta scores: E(): 8.8e-07, 28.77% id in 139 aa; hemin storage protein complement(4992909..4993331) Pectobacterium atrosepticum SCRI1043 2881884 YP_052537.1 CDS hmsR NC_004547.2 4993335 4994663 R predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase complement(4993335..4994663) Pectobacterium atrosepticum SCRI1043 2881306 YP_052538.1 CDS pgaB NC_004547.2 4994660 4996675 R in Yersinia this protein is involved in biofilm formation and hemin adsorption; related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1,6-N-acetyl-D-glucosamine (PGA) export; outer membrane N-deacetylase complement(4994660..4996675) Pectobacterium atrosepticum SCRI1043 2881304 YP_052539.1 CDS pgaA NC_004547.2 4996687 4999149 R outer membrane protein essential for the synthesis of poly-beta-1,6-N-acetyl-D-glucosamine (PGA); adhesin required for biofilm formation; PgaA (HmsH) seems to translocate and/or dock PGA to the cell surface; member of the hmsHFRS (ycdSRQP or pgaABCD in Escherichia coli) operon in Yersinia; outer membrane protein PgaA complement(4996687..4999149) Pectobacterium atrosepticum SCRI1043 2881305 YP_052540.1 CDS ECA4455 NC_004547.2 4999353 5000237 D Similar to Xanthomonas axonopodis hypothetical protein Xac3950 SWALL:Q8PFN0 (EMBL:AE012044) (293 aa) fasta scores: E(): 9.4e-41, 37.94% id in 282 aa, and to Vibrio cholerae hypothetical protein Vc1772 SWALL:Q9KR71 (EMBL:AE004254) (286 aa) fasta scores: E(): 3e-24, 33.21% id in 283 aa; hypothetical protein 4999353..5000237 Pectobacterium atrosepticum SCRI1043 2882926 YP_052541.1 CDS smvA NC_004547.2 5001994 5003496 D Similar to Salmonella typhimurium methyl viologen resistance protein SmvA or stm1574 SWALL:SMVA_SALTY (SWALL:P37594) (495 aa) fasta scores: E(): 5.1e-64, 41.33% id in 496 aa; methyl viologen resistance protein 5001994..5003496 Pectobacterium atrosepticum SCRI1043 2884378 YP_052542.1 CDS ECA4458 NC_004547.2 5003604 5004263 R Similar to Yersinia pestis lipoprotein ypo2970 or y1514 SWALL:Q8ZCL3 (EMBL:AJ414154) (218 aa) fasta scores: E(): 2.1e-56, 69.58% id in 217 aa, and to Ralstonia solanacearum probable lipoprotein rsp0675 or rs01774 SWALL:Q8XS06 (EMBL:AL646080) (223 aa) fasta scores: E(): 5.9e-47, 59.09% id in 220 aa; lipoprotein complement(5003604..5004263) Pectobacterium atrosepticum SCRI1043 2882928 YP_052543.1 CDS ECA4459 NC_004547.2 5004260 5004619 R Similar to Yersinia pestis lipoprotein ypo2971 SWALL:Q8ZCL2 (EMBL:AJ414154) (118 aa) fasta scores: E(): 1.6e-25, 65.21% id in 115 aa, and to Ralstonia solanacearum probable lipoprotein rsp0674 or rs01775 SWALL:Q8XS07 (EMBL:AL646080) (125 aa) fasta scores: E(): 3.4e-17, 46.15% id in 117 aa; lipoprotein complement(5004260..5004619) Pectobacterium atrosepticum SCRI1043 2882913 YP_052544.1 CDS ECA4460 NC_004547.2 5004638 5005309 R Similar to Yersinia pestis lipoprotein ypo2972 SWALL:Q8ZCL1 (EMBL:AJ414154) (223 aa) fasta scores: E(): 2.5e-65, 78.82% id in 222 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0045 SWALL:Q9I787 (EMBL:AE004444) (228 aa) fasta scores: E(): 6.8e-58, 73.68% id in 209 aa; lipoprotein complement(5004638..5005309) Pectobacterium atrosepticum SCRI1043 2882914 YP_052545.1 CDS aegA NC_004547.2 5005738 5007762 D unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); oxidoreductase Fe-S binding subunit 5005738..5007762 Pectobacterium atrosepticum SCRI1043 2883814 YP_052546.1 CDS ECA4462 NC_004547.2 5007759 5008280 D Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 electron transport protein HydN or b2713 or c3269 or z4021 or ecs3569 SWALL:HYDN_ECOLI (SWALL:P30132) (175 aa) fasta scores: E(): 4e-33, 49.71% id in 173 aa; electron transport protein 5007759..5008280 Pectobacterium atrosepticum SCRI1043 2882915 YP_052547.1 CDS ECA4463 NC_004547.2 5008470 5009213 D Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein yiee or b3712 or c4635 SWALL:YIEE_ECOLI (SWALL:P31464) (253 aa) fasta scores: E(): 1.6e-25, 34.81% id in 247 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yiee or stm3849 or sty3934 SWALL:Q8XF90 (EMBL:AE008879) (251 aa) fasta scores: E(): 6.4e-24, 33.33% id in 237 aa; hypothetical protein 5008470..5009213 Pectobacterium atrosepticum SCRI1043 2882916 YP_052548.1 CDS ECA4464 NC_004547.2 5009268 5010680 R Similar to Yersinia pestis membrane/transport protein, symporter y4121 SWALL:AAM87663 (EMBL:AE014013) (461 aa) fasta scores: E(): 3e-144, 89.13% id in 460 aa, and to Salmonella typhimurium xanthine/uracil permeases family yieg or stm3851 SWALL:Q8ZKX8 (EMBL:AE008879) (487 aa) fasta scores: E(): 2e-135, 83.59% id in 451 aa; permease complement(5009268..5010680) Pectobacterium atrosepticum SCRI1043 2882265 YP_052549.1 CDS ECA4465 NC_004547.2 5010677 5010967 R Similar to Salmonella typhimurium, and Salmonella typhi phage shock protein PspD or stm1687 or sty1374 SWALL:Q8XEN8 (EMBL:AE008775) (72 aa) fasta scores: E(): 2.4, 31.08% id in 74 aa, and to Salmonella typhi phage shock protein D PspD or t1592 SWALL:AAO69223 (EMBL:AE016839) (72 aa) fasta scores: E(): 2.4, 31.08% id in 74 aa; hypothetical protein complement(5010677..5010967) Pectobacterium atrosepticum SCRI1043 2882266 YP_052550.1 CDS ECA4466 NC_004547.2 5011178 5011843 D YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; 6-phosphogluconate phosphatase 5011178..5011843 Pectobacterium atrosepticum SCRI1043 2882267 YP_052551.1 CDS ECA4467 NC_004547.2 5011923 5012651 R Similar to Yersinia pestis amino acid transport system permease ypo4109 SWALL:Q8Z9T6 (EMBL:AJ414160) (251 aa) fasta scores: E(): 6.5e-74, 82.44% id in 245 aa, and to Pseudomonas aeruginosa probable amino acid permease pa2202 SWALL:Q9I1R5 (EMBL:AE004646) (225 aa) fasta scores: E(): 1e-52, 66.66% id in 216 aa; binding-protein-dependent transport system inner membrane protein complement(5011923..5012651) Pectobacterium atrosepticum SCRI1043 2881543 YP_052552.1 CDS ECA4468 NC_004547.2 5012653 5013396 R Similar to Yersinia pestis ABC transporter permease ypo4110 or gltj or y4124 SWALL:AAM87666 (EMBL:AJ414160) (245 aa) fasta scores: E(): 4.7e-70, 75.72% id in 243 aa, and to Pseudomonas aeruginosa probable amino acid permease pa2203 SWALL:Q9I1R4 (EMBL:AE004646) (238 aa) fasta scores: E(): 5.6e-47, 62.88% id in 229 aa; binding-protein-dependent transport system inner membrane protein complement(5012653..5013396) Pectobacterium atrosepticum SCRI1043 2881544 YP_052553.1 CDS ECA4470 NC_004547.2 5013698 5014534 R Similar to Yersinia pestis periplasmic solute-binding protein ypo4111 or y4125 SWALL:Q8Z9T4 (EMBL:AJ414160) (284 aa) fasta scores: E(): 2e-86, 83.81% id in 278 aa, and to Pseudomonas aeruginosa probable binding protein component of ABC transporter pa2204 SWALL:Q9I1R3 (EMBL:AE004647) (268 aa) fasta scores: E(): 1.6e-55, 58.77% id in 262 aa; extracellular solute-binding protein complement(5013698..5014534) Pectobacterium atrosepticum SCRI1043 2881545 YP_052554.1 CDS benE NC_004547.2 5014662 5015861 R Similar to Acinetobacter calcoaceticus benzoate membrane transport protein BenE SWALL:BENE_ACICA (SWALL:P07775) (394 aa) fasta scores: E(): 2.2e-55, 41.2% id in 381 aa, and to Salmonella typhi benzoate membrane transport protein sty1458 SWALL:Q8Z753 (EMBL:AL627270) (412 aa) fasta scores: E(): 2.9e-80, 57.03% id in 391 aa; benzoate transport protein complement(5014662..5015861) Pectobacterium atrosepticum SCRI1043 2882564 YP_052555.1 CDS ECA4472 NC_004547.2 5015940 5016497 D Similar to Escherichia coli hypothetical protein ydcn or b1434 SWALL:YDCN_ECOLI (SWALL:P77626) (178 aa) fasta scores: E(): 2.1e-36, 54.64% id in 183 aa, and to Salmonella typhi DNA-binding protein t1514 SWALL:AAO69149 (EMBL:AE016839) (178 aa) fasta scores: E(): 1.6e-35, 54.09% id in 183 aa; DNA-binding protein 5015940..5016497 Pectobacterium atrosepticum SCRI1043 2881546 YP_052556.1 CDS phoU NC_004547.2 5016804 5017538 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(5016804..5017538) Pectobacterium atrosepticum SCRI1043 2883718 YP_052557.1 CDS pstB NC_004547.2 5017552 5018328 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(5017552..5018328) Pectobacterium atrosepticum SCRI1043 2882476 YP_052558.1 CDS pstA NC_004547.2 5018414 5019301 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA complement(5018414..5019301) Pectobacterium atrosepticum SCRI1043 2882474 YP_052559.1 CDS pstC NC_004547.2 5019301 5020260 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC complement(5019301..5020260) Pectobacterium atrosepticum SCRI1043 2882462 YP_052560.1 CDS pstS NC_004547.2 5020423 5021463 R Similar to Escherichia coli, and Shigella flexneri phosphate-binding periplasmic protein precursor PstS or PhoS or b3728 or sf3727 SWALL:PSTS_ECOLI (SWALL:P06128) (346 aa) fasta scores: E(): 4.6e-109, 82.65% id in 346 aa; phosphate ABC transporter periplasmic substrate-binding protein PstS complement(5020423..5021463) Pectobacterium atrosepticum SCRI1043 2882463 YP_052561.1 CDS ECA4478 NC_004547.2 5021802 5022536 R Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 5.3e-49, 61.66% id in 240 aa; amino acid ABC transporter ATP-binding protein complement(5021802..5022536) Pectobacterium atrosepticum SCRI1043 2881214 YP_052562.1 CDS ECA4479 NC_004547.2 5022533 5023303 R Similar to Ralstonia solanacearum probable amino acid transmembrane ABC transporter protein rsp0933 or rs05400 SWALL:Q8XRC5 (EMBL:AL646081) (248 aa) fasta scores: E(): 2.3e-55, 60.26% id in 229 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4282 or agr_l_1163 SWALL:Q8U817 (EMBL:AE009356) (252 aa) fasta scores: E(): 1.1e-50, 56.38% id in 227 aa; amino acid ABC transporter permease complement(5022533..5023303) Pectobacterium atrosepticum SCRI1043 2881215 YP_052563.1 CDS ECA4480 NC_004547.2 5023309 5024004 R Similar to Escherichia coli, and Escherichia coli O6 glutamate/aspartate transport system permease protein GltJ or b0654 or c0738 SWALL:GLTJ_ECOLI (SWALL:P41074) (246 aa) fasta scores: E(): 2.8e-19, 30.94% id in 223 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4281 or agr_l_1164 SWALL:Q8U818 (EMBL:AE009356) (235 aa) fasta scores: E(): 9.3e-48, 57.01% id in 221 aa; amino acid ABC transporter permease complement(5023309..5024004) Pectobacterium atrosepticum SCRI1043 2881216 YP_052564.1 CDS ECA4481 NC_004547.2 5024025 5024777 R Similar to Agrobacterium tumefaciens short-chain dehydrogenase atu4280 or agr_l_1165 SWALL:Q8U819 (EMBL:AE009356) (259 aa) fasta scores: E(): 9.9e-61, 66.12% id in 245 aa, and to Ralstonia solanacearum probable oxidoreductase protein rsp0935 or rs05398 SWALL:Q8XRC3 (EMBL:AL646081) (250 aa) fasta scores: E(): 4.9e-67, 70.56% id in 248 aa; short-chain dehydrogenase complement(5024025..5024777) Pectobacterium atrosepticum SCRI1043 2881506 YP_052565.1 CDS ECA4482 NC_004547.2 5024880 5025287 R Similar to Bradyrhizobium japonicum Bll3635 protein bll3635 SWALL:Q89P48 (EMBL:AP005948) (141 aa) fasta scores: E(): 2.8e-07, 32.84% id in 137 aa, and to Pseudomonas syringae conserved hypothetical protein pspto2918 SWALL:Q881H5 (EMBL:AE016866) (135 aa) fasta scores: E(): 0.00068, 26.31% id in 133 aa; hypothetical protein complement(5024880..5025287) Pectobacterium atrosepticum SCRI1043 2881507 YP_052566.1 CDS nac NC_004547.2 5025430 5026353 R Transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation; nitrogen assimilation transcriptional regulator complement(5025430..5026353) Pectobacterium atrosepticum SCRI1043 2885164 YP_052567.1 CDS ECA4484 NC_004547.2 5026476 5026682 D hypothetical protein 5026476..5026682 Pectobacterium atrosepticum SCRI1043 2881508 YP_052568.1 CDS aatA NC_004547.2 5026700 5027902 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 5026700..5027902 Pectobacterium atrosepticum SCRI1043 2885151 YP_052569.1 CDS ECA4486 NC_004547.2 5027972 5028745 R Similar to Agrobacterium tumefaciens hypothetical protein atu4277 or agr_l_1172 SWALL:Q8U822 (EMBL:AE009356) (263 aa) fasta scores: E(): 3.3e-64, 66.27% id in 252 aa, and to Bradyrhizobium japonicum Blr3634 protein blr3634 SWALL:BAC48899 (EMBL:AP005948) (255 aa) fasta scores: E(): 1.6e-57, 63.2% id in 250 aa; LamB/YcsF family protein complement(5027972..5028745) Pectobacterium atrosepticum SCRI1043 2881509 YP_052570.1 CDS ECA4487 NC_004547.2 5028745 5029737 R Similar to Agrobacterium tumefaciens hypothetical protein atu4276 or agr_l_1174 SWALL:Q8U823 (EMBL:AE009356) (331 aa) fasta scores: E(): 1.5e-66, 57.41% id in 317 aa, and to Bradyrhizobium japonicum Blr3633 protein blr3633 SWALL:BAC48898 (EMBL:AP005948) (325 aa) fasta scores: E(): 6.3e-57, 50% id in 320 aa; allophanate hydrolase subunit 2 complement(5028745..5029737) Pectobacterium atrosepticum SCRI1043 2881625 YP_052571.1 CDS ECA4488 NC_004547.2 5029734 5030435 R Similar to Agrobacterium tumefaciens hypothetical protein atu4275 or agr_l_1175 SWALL:Q8U824 (EMBL:AE009356) (235 aa) fasta scores: E(): 2.3e-49, 57.45% id in 228 aa, and to Bradyrhizobium japonicum Blr3632 protein blr3632 SWALL:BAC48897 (EMBL:AP005948) (239 aa) fasta scores: E(): 4.8e-39, 51.64% id in 213 aa; allophanate hydrolase subunit 1 complement(5029734..5030435) Pectobacterium atrosepticum SCRI1043 2881626 YP_052572.1 CDS ECA4489 NC_004547.2 5030439 5031278 R Similar to Ralstonia solanacearum probable amino-acid-binding periplasmic ABC transporter protein rsp0931 or rs05402 SWALL:Q8XRC7 (EMBL:AL646081) (280 aa) fasta scores: E(): 1.3e-54, 53.4% id in 279 aa, and to Ralstonia solanacearum probable amino-acid-binding periplasmic ABC transporter protein rsc2257 or rs01302 SWALL:Q8XX59 (EMBL:AL646069) (284 aa) fasta scores: E(): 1e-25, 33.33% id in 255 aa; extracellular solute-binding protein complement(5030439..5031278) Pectobacterium atrosepticum SCRI1043 2881627 YP_052573.1 CDS ECA4490 NC_004547.2 5031540 5032457 D Similar to Rhizobium meliloti hypothetical transmembrane protein smc02371 r01027 or smc02371 SWALL:Q92R83 (EMBL:AL591785) (312 aa) fasta scores: E(): 5.7e-37, 41.27% id in 298 aa, and to Brucella melitensis transporter, dme family bmei1323 SWALL:Q8YG39 (EMBL:AE009570) (319 aa) fasta scores: E(): 1.6e-36, 39.51% id in 291 aa; hypothetical protein 5031540..5032457 Pectobacterium atrosepticum SCRI1043 2881573 YP_052574.1 CDS ECA4491 NC_004547.2 5032592 5033818 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(5032592..5033818) Pectobacterium atrosepticum SCRI1043 2881574 YP_052575.1 CDS fabG NC_004547.2 5033818 5034549 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(5033818..5034549) Pectobacterium atrosepticum SCRI1043 2881575 YP_052576.1 CDS ECA4493 NC_004547.2 5034588 5035070 R Similar to Streptococcus pyogenes, and Streptococcus pyogenes FabZ or spy1746 or spym18_1818 SWALL:FABZ_STRPY (SWALL:P58175) (139 aa) fasta scores: E(): 8e-05, 32.84% id in 137 aa, and to Escherichia coli O157:H7 beta-hydroxydecanoyl-ACP dehydrase z4864 or ecs4339 SWALL:Q8X6K7 (EMBL:AE005571) (154 aa) fasta scores: E(): 2.8e-29, 51.59% id in 157 aa; beta-hydroxydecanoyl-ACP dehydrase complement(5034588..5035070) Pectobacterium atrosepticum SCRI1043 2881576 YP_052577.1 CDS ECA4494 NC_004547.2 5035063 5036220 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(5035063..5036220) Pectobacterium atrosepticum SCRI1043 2881972 YP_052578.1 CDS ECA4495 NC_004547.2 5036222 5036797 R Similar to Escherichia coli O157:H7 z4862 protein z4862 or ecs4337 SWALL:Q8X6L1 (EMBL:AE005571) (194 aa) fasta scores: E(): 2.6e-49, 65.4% id in 185 aa, and to Vibrio vulnificus conserved hypothetical protein vv10057 SWALL:AAO08599 (EMBL:AE016797) (183 aa) fasta scores: E(): 2.9e-09, 35.22% id in 159 aa; lipoprotein complement(5036222..5036797) Pectobacterium atrosepticum SCRI1043 2881973 YP_052579.1 CDS ECA4496 NC_004547.2 5036794 5039115 R Similar to Escherichia coli O6 conserved hypothetical protein c1191 SWALL:AAN79653 (EMBL:AE016758) (772 aa) fasta scores: E(): 8.3e-184, 64.43% id in 762 aa, and to Vibrio vulnificus predicted exporter vv10056 SWALL:AAO08598 (EMBL:AE016797) (756 aa) fasta scores: E(): 5.4e-85, 36.17% id in 763 aa; hypothetical protein complement(5036794..5039115) Pectobacterium atrosepticum SCRI1043 2881974 YP_052580.1 CDS ECA4497 NC_004547.2 5039087 5039692 R Similar to Escherichia coli O6 conserved hypothetical protein c1192 SWALL:AAN79654 (EMBL:AE016758) (201 aa) fasta scores: E(): 5.5e-45, 60% id in 190 aa, and to Vibrio vulnificus conserved hypothetical protein vv10055 SWALL:AAO08597 (EMBL:AE016797) (208 aa) fasta scores: E(): 1.7e-24, 37.87% id in 198 aa; hypothetical protein complement(5039087..5039692) Pectobacterium atrosepticum SCRI1043 2882489 YP_052581.1 CDS ECA4498 NC_004547.2 5039689 5040111 R Similar to Escherichia coli O6 hypothetical protein c1193 SWALL:AAN79655 (EMBL:AE016758) (140 aa) fasta scores: E(): 5.7e-45, 76.42% id in 140 aa, and to Vibrio vulnificus predicted thioesterase vv10054 SWALL:AAO08596 (EMBL:AE016797) (148 aa) fasta scores: E(): 4.2e-27, 52.3% id in 130 aa; thioesterase complement(5039689..5040111) Pectobacterium atrosepticum SCRI1043 2882490 YP_052582.1 CDS ECA4499 NC_004547.2 5040111 5041826 R Similar to Escherichia coli O6 enzyme c1194 SWALL:AAN79656 (EMBL:AE016758) (540 aa) fasta scores: E(): 2.2e-148, 66.17% id in 541 aa, and to Vibrio vulnificus predicted acyltransferase vv10052 SWALL:AAO08594 (EMBL:AE016797) (569 aa) fasta scores: E(): 1.5e-122, 54% id in 574 aa; glycosyl transferase family protein complement(5040111..5041826) Pectobacterium atrosepticum SCRI1043 2882491 YP_052583.1 CDS ECA4500 NC_004547.2 5041817 5042206 R Similar to Escherichia coli O6 conserved hypothetical protein c1196 SWALL:AAN79658 (EMBL:AE016758) (125 aa) fasta scores: E(): 3.4e-24, 54.78% id in 115 aa, and to Vibrio vulnificus 3-hydroxymyristoyl/3-hydroxydecanoyl- vv10051 SWALL:AAO08593 (EMBL:AE016797) (123 aa) fasta scores: E(): 2.4e-14, 49.12% id in 114 aa; hypothetical protein complement(5041817..5042206) Pectobacterium atrosepticum SCRI1043 2882492 YP_052584.1 CDS ECA4501 NC_004547.2 5042193 5043548 R Similar to Escherichia coli O157:H7 enzyme z4856 or ecs4331 SWALL:Q8X6M3 (EMBL:AE005571) (453 aa) fasta scores: E(): 3.5e-72, 46.3% id in 447 aa, and to Vibrio vulnificus acyl-coenzyme A synthetase vv10050 SWALL:Q8DG01 (EMBL:AE016797) (455 aa) fasta scores: E(): 9.7e-48, 37.86% id in 441 aa; AMP-binding protein complement(5042193..5043548) Pectobacterium atrosepticum SCRI1043 2881472 YP_052585.1 CDS ECA4502 NC_004547.2 5043545 5044123 R Similar to Escherichia coli O6 conserved hypothetical protein c1198 SWALL:AAN79660 (EMBL:AE016758) (194 aa) fasta scores: E(): 2.3e-36, 52.4% id in 187 aa, and to Vibrio vulnificus predicted membrane protein vv10049 SWALL:AAO08591 (EMBL:AE016797) (185 aa) fasta scores: E(): 6.6e-27, 42.32% id in 189 aa; hypothetical protein complement(5043545..5044123) Pectobacterium atrosepticum SCRI1043 2881473 YP_052586.1 CDS ECA4503 NC_004547.2 5044136 5044387 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(5044136..5044387) Pectobacterium atrosepticum SCRI1043 2881474 YP_052587.1 CDS ECA4504 NC_004547.2 5044405 5044671 R Similar to Escherichia coli O6 acyl carrier protein c1200 SWALL:AAN79662 (EMBL:AE016758) (85 aa) fasta scores: E(): 4.9e-22, 72.94% id in 85 aa, and to Vibrio vulnificus acyl carrier protein vv10047 SWALL:AAO08589 (EMBL:AE016797) (86 aa) fasta scores: E(): 1.5e-18, 65.06% id in 83 aa; acyl carrier protein complement(5044405..5044671) Pectobacterium atrosepticum SCRI1043 2885352 YP_052588.1 CDS ECA4505 NC_004547.2 5044691 5045479 R Similar to Escherichia coli O6 phospholipid biosynthesis acyltransferase c1201 SWALL:Q8FJ00 (EMBL:AE016758) (279 aa) fasta scores: E(): 6.5e-63, 61.56% id in 268 aa, and to Vibrio vulnificus 1-acyl-sn-glycerol-3-phosphate acyltransferase vv10046 SWALL:Q8DG05 (EMBL:AE016797) (252 aa) fasta scores: E(): 6.7e-40, 44% id in 250 aa; acyltransferase complement(5044691..5045479) Pectobacterium atrosepticum SCRI1043 2885353 YP_052589.1 CDS ECA4506 NC_004547.2 5045472 5046200 R Similar to Escherichia coli O157:H7 hypothetical protein z4851 or ecs4326 SWALL:Q8X6N8 (EMBL:AE005571) (240 aa) fasta scores: E(): 1.2e-50, 55.69% id in 237 aa, and to Pseudomonas syringae conserved hypothetical protein pspto5091 SWALL:Q87V50 (EMBL:AE016874) (239 aa) fasta scores: E(): 5.8e-21, 35.98% id in 239 aa; hypothetical protein complement(5045472..5046200) Pectobacterium atrosepticum SCRI1043 2885354 YP_052590.1 CDS ECA4507 NC_004547.2 5046558 5046950 R Similar to Escherichia coli O6 conserved hypothetical protein c1204 SWALL:Q8FIZ7 (EMBL:AE016758) (129 aa) fasta scores: E(): 1.2e-18, 46.4% id in 125 aa, and to Vibrio vulnificus conserved hypothetical protein vv10044 SWALL:Q8DG07 (EMBL:AE016797) (118 aa) fasta scores: E(): 8e-12, 41.07% id in 112 aa; lipoprotein complement(5046558..5046950) Pectobacterium atrosepticum SCRI1043 2885355 YP_052591.1 CDS glmS NC_004547.2 5047222 5049054 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(5047222..5049054) Pectobacterium atrosepticum SCRI1043 2881759 YP_052592.1 CDS glmU NC_004547.2 5049240 5050610 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(5049240..5050610) Pectobacterium atrosepticum SCRI1043 2881760 YP_052593.1 CDS pelX NC_004547.2 5050936 5053170 D Similar to Erwinia chrysanthemi exopolygalacturonate lyase PelX SWALL:Q9Z5P8 (EMBL:Y16797) (734 aa) fasta scores: E(): 1.9e-206, 73.8% id in 733 aa, and to Erwinia chrysanthemi pectate disaccharide-lyase precursor PelX SWALL:PELX_ERWCH (SWALL:P22751) (749 aa) fasta scores: E(): 2.8e-195, 74.16% id in 689 aa; exopolygalacturonate lyase 5050936..5053170 Pectobacterium atrosepticum SCRI1043 2884510 YP_052594.1 CDS atpC NC_004547.2 5053527 5053946 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon complement(5053527..5053946) Pectobacterium atrosepticum SCRI1043 2881666 YP_052595.1 CDS atpD NC_004547.2 5053966 5055348 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(5053966..5055348) Pectobacterium atrosepticum SCRI1043 2881667 YP_052596.1 CDS atpG NC_004547.2 5055396 5056259 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(5055396..5056259) Pectobacterium atrosepticum SCRI1043 2881684 YP_052597.1 CDS atpA NC_004547.2 5056312 5057853 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(5056312..5057853) Pectobacterium atrosepticum SCRI1043 2881654 YP_052598.1 CDS atpH NC_004547.2 5057866 5058399 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(5057866..5058399) Pectobacterium atrosepticum SCRI1043 2881685 YP_052599.1 CDS atpF NC_004547.2 5058414 5058884 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B complement(5058414..5058884) Pectobacterium atrosepticum SCRI1043 2881679 YP_052600.1 CDS atpE NC_004547.2 5058948 5059187 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(5058948..5059187) Pectobacterium atrosepticum SCRI1043 2881678 YP_052601.1 CDS atpB NC_004547.2 5059237 5060037 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(5059237..5060037) Pectobacterium atrosepticum SCRI1043 2881655 YP_052602.1 CDS atpI NC_004547.2 5060059 5060442 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(5060059..5060442) Pectobacterium atrosepticum SCRI1043 2881686 YP_052603.1 CDS gidB NC_004547.2 5061066 5061686 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(5061066..5061686) Pectobacterium atrosepticum SCRI1043 2882457 YP_052604.1 CDS gidA NC_004547.2 5061770 5063659 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(5061770..5063659) Pectobacterium atrosepticum SCRI1043 2882456 ECAt001 tRNA ECAt001 NC_004547.2 18580 18655 D tRNA-Glu 18580..18655 Pectobacterium atrosepticum SCRI1043 2881590 ECAt002 tRNA ECAt002 NC_004547.2 55285 55361 D tRNA-Pro 55285..55361 Pectobacterium atrosepticum SCRI1043 2882703 ECAt003 tRNA ECAt003 NC_004547.2 242245 242321 D tRNA-Ile 242245..242321 Pectobacterium atrosepticum SCRI1043 2883483 ECAt004 tRNA ECAt004 NC_004547.2 242364 242439 D tRNA-Ala 242364..242439 Pectobacterium atrosepticum SCRI1043 2883457 ECAt005 tRNA ECAt005 NC_004547.2 249788 249863 D tRNA-Thr 249788..249863 Pectobacterium atrosepticum SCRI1043 2882440 ECAt006 tRNA ECAt006 NC_004547.2 249879 249963 D tRNA-Tyr 249879..249963 Pectobacterium atrosepticum SCRI1043 2882973 ECAt007 tRNA ECAt007 NC_004547.2 250093 250167 D tRNA-Gly 250093..250167 Pectobacterium atrosepticum SCRI1043 2881553 ECAt008 tRNA ECAt008 NC_004547.2 250174 250249 D tRNA-Thr 250174..250249 Pectobacterium atrosepticum SCRI1043 2882808 ECAt009 tRNA ECAt009 NC_004547.2 284073 284149 D tRNA-Ile 284073..284149 Pectobacterium atrosepticum SCRI1043 2885661 ECAt010 tRNA ECAt010 NC_004547.2 284192 284267 D tRNA-Ala 284192..284267 Pectobacterium atrosepticum SCRI1043 2885487 ECAt011 tRNA ECAt011 NC_004547.2 465940 466024 D tRNA-Leu 465940..466024 Pectobacterium atrosepticum SCRI1043 2885563 ECAt012 tRNA ECAt012 NC_004547.2 688584 688659 R tRNA-Phe complement(688584..688659) Pectobacterium atrosepticum SCRI1043 2884781 ECAt013 tRNA ECAt013 NC_004547.2 750486 750561 R tRNA-Met complement(750486..750561) Pectobacterium atrosepticum SCRI1043 2882084 ECAt014 tRNA ECAt014 NC_004547.2 773027 773113 D tRNA-Leu 773027..773113 Pectobacterium atrosepticum SCRI1043 2882194 ECAt015 tRNA ECAt015 NC_004547.2 776983 777059 D tRNA-Met 776983..777059 Pectobacterium atrosepticum SCRI1043 2882623 ECAt016 tRNA ECAt016 NC_004547.2 806751 806837 D tRNA-Leu 806751..806837 Pectobacterium atrosepticum SCRI1043 2884726 ECAt017 tRNA ECAt017 NC_004547.2 806915 807001 D tRNA-Leu 806915..807001 Pectobacterium atrosepticum SCRI1043 2884884 ECAt018 tRNA ECAt018 NC_004547.2 807076 807162 D tRNA-Leu 807076..807162 Pectobacterium atrosepticum SCRI1043 2885435 ECAt019 tRNA ECAt019 NC_004547.2 847939 848012 D tRNA-Gly 847939..848012 Pectobacterium atrosepticum SCRI1043 2883900 ECAt020 tRNA ECAt020 NC_004547.2 1075223 1075298 R tRNA-Phe complement(1075223..1075298) Pectobacterium atrosepticum SCRI1043 2884548 ECAt021 tRNA ECAt021 NC_004547.2 1121082 1121158 R tRNA-Met complement(1121082..1121158) Pectobacterium atrosepticum SCRI1043 2883923 ECAt022 tRNA ECAt022 NC_004547.2 1121207 1121283 R tRNA-Met complement(1121207..1121283) Pectobacterium atrosepticum SCRI1043 2883891 ECAt023 tRNA ECAt023 NC_004547.2 1121332 1121408 R tRNA-Met complement(1121332..1121408) Pectobacterium atrosepticum SCRI1043 2884014 ECAt024 tRNA ECAt024 NC_004547.2 1496589 1496662 R tRNA-Gln complement(1496589..1496662) Pectobacterium atrosepticum SCRI1043 2883526 ECAt025 tRNA ECAt025 NC_004547.2 1496669 1496745 R tRNA-Met complement(1496669..1496745) Pectobacterium atrosepticum SCRI1043 2883353 ECAt026 tRNA ECAt026 NC_004547.2 1496800 1496874 R tRNA-Gln complement(1496800..1496874) Pectobacterium atrosepticum SCRI1043 2883013 ECAt027 tRNA ECAt027 NC_004547.2 1496910 1496984 R tRNA-Gln complement(1496910..1496984) Pectobacterium atrosepticum SCRI1043 2885671 ECAt028 tRNA ECAt028 NC_004547.2 1497041 1497125 R tRNA-Leu complement(1497041..1497125) Pectobacterium atrosepticum SCRI1043 2885660 ECAt029 tRNA ECAt029 NC_004547.2 1497133 1497209 R tRNA-Met complement(1497133..1497209) Pectobacterium atrosepticum SCRI1043 2885555 ECAt030 tRNA ECAt030 NC_004547.2 1556667 1556742 D tRNA-Lys 1556667..1556742 Pectobacterium atrosepticum SCRI1043 2883069 ECAt031 tRNA ECAt031 NC_004547.2 1556938 1557013 D tRNA-Lys 1556938..1557013 Pectobacterium atrosepticum SCRI1043 2882838 ECAt032 tRNA ECAt032 NC_004547.2 1586840 1586927 D tRNA-Ser 1586840..1586927 Pectobacterium atrosepticum SCRI1043 2882901 ECAt033 tRNA ECAt033 NC_004547.2 1727911 1727986 R tRNA-Asn complement(1727911..1727986) Pectobacterium atrosepticum SCRI1043 2884592 ECAt034 tRNA ECAt034 NC_004547.2 1927139 1927214 R tRNA-Asn complement(1927139..1927214) Pectobacterium atrosepticum SCRI1043 2881764 ECAt035 tRNA ECAt035 NC_004547.2 1989132 1989221 R tRNA-Ser complement(1989132..1989221) Pectobacterium atrosepticum SCRI1043 2882551 ECAt036 tRNA ECAt036 NC_004547.2 2012343 2012430 D tRNA-Ser 2012343..2012430 Pectobacterium atrosepticum SCRI1043 2884769 ECAt037 tRNA ECAt037 NC_004547.2 2159593 2159669 R tRNA-Val complement(2159593..2159669) Pectobacterium atrosepticum SCRI1043 2881238 ECAt038 tRNA ECAt038 NC_004547.2 2179660 2179736 R tRNA-Val complement(2179660..2179736) Pectobacterium atrosepticum SCRI1043 2882509 ECAt039 tRNA ECAt039 NC_004547.2 2643735 2643819 D tRNA-Tyr 2643735..2643819 Pectobacterium atrosepticum SCRI1043 2885501 ECAt040 tRNA ECAt040 NC_004547.2 2846049 2846138 D tRNA-Ser 2846049..2846138 Pectobacterium atrosepticum SCRI1043 2884198 ECAt041 tRNA ECAt041 NC_004547.2 3091867 3091943 D tRNA-Pro 3091867..3091943 Pectobacterium atrosepticum SCRI1043 2882548 ECAt042 tRNA ECAt042 NC_004547.2 3227600 3227686 R tRNA-Leu complement(3227600..3227686) Pectobacterium atrosepticum SCRI1043 2884809 ECAt043 tRNA ECAt043 NC_004547.2 3227695 3227768 R tRNA-Cys complement(3227695..3227768) Pectobacterium atrosepticum SCRI1043 2884963 ECAt044 tRNA ECAt044 NC_004547.2 3227820 3227895 R tRNA-Gly complement(3227820..3227895) Pectobacterium atrosepticum SCRI1043 2883985 ECAt045 tRNA ECAt045 NC_004547.2 3232835 3232910 R tRNA-Lys complement(3232835..3232910) Pectobacterium atrosepticum SCRI1043 2882444 ECAt046 tRNA ECAt046 NC_004547.2 3236126 3236201 D tRNA-Asn 3236126..3236201 Pectobacterium atrosepticum SCRI1043 2881893 ECAt047 tRNA ECAt047 NC_004547.2 3446540 3446614 D tRNA-Arg 3446540..3446614 Pectobacterium atrosepticum SCRI1043 2884791 ECAt048 tRNA ECAt048 NC_004547.2 3483053 3483129 D tRNA-Arg 3483053..3483129 Pectobacterium atrosepticum SCRI1043 2885018 ECAt049 tRNA ECAt049 NC_004547.2 3695406 3695481 R tRNA-Ala complement(3695406..3695481) Pectobacterium atrosepticum SCRI1043 2884572 ECAt050 tRNA ECAt050 NC_004547.2 3695529 3695604 R tRNA-Ala complement(3695529..3695604) Pectobacterium atrosepticum SCRI1043 2883095 ECAt051 tRNA ECAt051 NC_004547.2 3698520 3698595 D tRNA-Val 3698520..3698595 Pectobacterium atrosepticum SCRI1043 2884166 ECAt052 tRNA ECAt052 NC_004547.2 3698654 3698729 D tRNA-Val 3698654..3698729 Pectobacterium atrosepticum SCRI1043 2884156 ECAt053 tRNA ECAt053 NC_004547.2 3698797 3698872 D tRNA-Val 3698797..3698872 Pectobacterium atrosepticum SCRI1043 2884152 ECAt054 tRNA ECAt054 NC_004547.2 3698880 3698955 D tRNA-Lys 3698880..3698955 Pectobacterium atrosepticum SCRI1043 2884148 ECAt055 tRNA ECAt055 NC_004547.2 3748710 3748786 R tRNA-Asp complement(3748710..3748786) Pectobacterium atrosepticum SCRI1043 2882070 ECAt056 tRNA ECAt056 NC_004547.2 3754266 3754342 R tRNA-Asp complement(3754266..3754342) Pectobacterium atrosepticum SCRI1043 2885778 ECAt057 tRNA ECAt057 NC_004547.2 3757776 3757851 R tRNA-Glu complement(3757776..3757851) Pectobacterium atrosepticum SCRI1043 2885686 ECAt058 tRNA ECAt058 NC_004547.2 3781091 3781167 R tRNA-Arg complement(3781091..3781167) Pectobacterium atrosepticum SCRI1043 2881268 ECAt059 tRNA ECAt059 NC_004547.2 3781221 3781297 R tRNA-Arg complement(3781221..3781297) Pectobacterium atrosepticum SCRI1043 2882069 ECAt060 tRNA ECAt060 NC_004547.2 3781369 3781445 R tRNA-Arg complement(3781369..3781445) Pectobacterium atrosepticum SCRI1043 2881341 ECAt061 tRNA ECAt061 NC_004547.2 3781454 3781546 R tRNA-Ser complement(3781454..3781546) Pectobacterium atrosepticum SCRI1043 2881342 ECAt062 tRNA ECAt062 NC_004547.2 3880169 3880244 R tRNA-Thr complement(3880169..3880244) Pectobacterium atrosepticum SCRI1043 2885766 ECAt063 tRNA ECAt063 NC_004547.2 3946001 3946076 R tRNA-Thr complement(3946001..3946076) Pectobacterium atrosepticum SCRI1043 2881310 ECAt064 tRNA ECAt064 NC_004547.2 3949476 3949551 R tRNA-Glu complement(3949476..3949551) Pectobacterium atrosepticum SCRI1043 2881421 ECAt065 tRNA ECAt065 NC_004547.2 4416625 4416700 R tRNA-Gly complement(4416625..4416700) Pectobacterium atrosepticum SCRI1043 2881444 ECAt066 tRNA ECAt066 NC_004547.2 4434381 4434456 R tRNA-Gly complement(4434381..4434456) Pectobacterium atrosepticum SCRI1043 2884666 ECAt067 tRNA ECAt067 NC_004547.2 4434533 4434608 R tRNA-Gly complement(4434533..4434608) Pectobacterium atrosepticum SCRI1043 2884648 ECAt068 tRNA ECAt068 NC_004547.2 4475679 4475754 R tRNA-Ala complement(4475679..4475754) Pectobacterium atrosepticum SCRI1043 2881694 ECAt069 tRNA ECAt069 NC_004547.2 4475797 4475873 R tRNA-Ile complement(4475797..4475873) Pectobacterium atrosepticum SCRI1043 2881557 ECAt070 tRNA ECAt070 NC_004547.2 4692513 4692589 R tRNA-Pro complement(4692513..4692589) Pectobacterium atrosepticum SCRI1043 2885735 ECAt071 tRNA ECAt071 NC_004547.2 4692633 4692719 R tRNA-Leu complement(4692633..4692719) Pectobacterium atrosepticum SCRI1043 2885746 ECAt072 tRNA ECAt072 NC_004547.2 4692769 4692844 R tRNA-His complement(4692769..4692844) Pectobacterium atrosepticum SCRI1043 2883993 ECAt073 tRNA ECAt073 NC_004547.2 4692961 4693037 R tRNA-Arg complement(4692961..4693037) Pectobacterium atrosepticum SCRI1043 2883994 ECAt074 tRNA ECAt074 NC_004547.2 4741571 4741646 R tRNA-Trp complement(4741571..4741646) Pectobacterium atrosepticum SCRI1043 2881586 ECAt075 tRNA ECAt075 NC_004547.2 4741701 4741777 R tRNA-Asp complement(4741701..4741777) Pectobacterium atrosepticum SCRI1043 2881608 ECAt076 tRNA ECAt076 NC_004547.2 4745211 4745286 R tRNA-Glu complement(4745211..4745286) Pectobacterium atrosepticum SCRI1043 2881465 ECAr001 rRNA ECAr001 NC_004547.2 16895 18438 D 16S ribosomal RNA 16895..18438 Pectobacterium atrosepticum SCRI1043 2884199 ECAr002 rRNA ECAr002 NC_004547.2 18884 21791 D 23S ribosomal RNA 18884..21791 Pectobacterium atrosepticum SCRI1043 2881254 ECAr003 rRNA ECAr003 NC_004547.2 21919 22038 D 5S ribosomal RNA 21919..22038 Pectobacterium atrosepticum SCRI1043 2881808 ECAr004 rRNA ECAr004 NC_004547.2 240628 242170 D 16S ribosomal RNA 240628..242170 Pectobacterium atrosepticum SCRI1043 2883438 ECAr005 rRNA ECAr005 NC_004547.2 242656 245563 D 23S ribosomal RNA 242656..245563 Pectobacterium atrosepticum SCRI1043 2883855 ECAr006 rRNA ECAr006 NC_004547.2 245691 245810 D 5S ribosomal RNA 245691..245810 Pectobacterium atrosepticum SCRI1043 2883693 ECAr007 rRNA ECAr007 NC_004547.2 282456 283998 D 16S ribosomal RNA 282456..283998 Pectobacterium atrosepticum SCRI1043 2885298 ECAr008 rRNA ECAr008 NC_004547.2 284484 287391 D 23S ribosomal RNA 284484..287391 Pectobacterium atrosepticum SCRI1043 2881253 ECAr009 rRNA ECAr009 NC_004547.2 287519 287638 D 5S ribosomal RNA 287519..287638 Pectobacterium atrosepticum SCRI1043 2881485 ECAr010 rRNA ECAr010 NC_004547.2 3754393 3754512 R 5S ribosomal RNA complement(3754393..3754512) Pectobacterium atrosepticum SCRI1043 2884900 ECAr011 rRNA ECAr011 NC_004547.2 3754640 3757547 R 23S ribosomal RNA complement(3754640..3757547) Pectobacterium atrosepticum SCRI1043 2884832 ECAr012 rRNA ECAr012 NC_004547.2 3757993 3759535 R 16S ribosomal RNA complement(3757993..3759535) Pectobacterium atrosepticum SCRI1043 2885687 ECAr013 rRNA ECAr013 NC_004547.2 3945847 3945967 R 5S ribosomal RNA complement(3945847..3945967) Pectobacterium atrosepticum SCRI1043 2882622 ECAr014 rRNA ECAr014 NC_004547.2 3946093 3946212 R 5S ribosomal RNA complement(3946093..3946212) Pectobacterium atrosepticum SCRI1043 2882636 ECAr015 rRNA ECAr015 NC_004547.2 3946340 3949247 R 23S ribosomal RNA complement(3946340..3949247) Pectobacterium atrosepticum SCRI1043 2881420 ECAr016 rRNA ECAr016 NC_004547.2 3949693 3951235 R 16S ribosomal RNA complement(3949693..3951235) Pectobacterium atrosepticum SCRI1043 2882104 ECAr017 rRNA ECAr017 NC_004547.2 4472319 4472438 R 5S ribosomal RNA complement(4472319..4472438) Pectobacterium atrosepticum SCRI1043 2881535 ECAr018 rRNA ECAr018 NC_004547.2 4472566 4475473 R 23S ribosomal RNA complement(4472566..4475473) Pectobacterium atrosepticum SCRI1043 2881536 ECAr019 rRNA ECAr019 NC_004547.2 4475948 4477490 R 16S ribosomal RNA complement(4475948..4477490) Pectobacterium atrosepticum SCRI1043 2881988 ECAr020 rRNA ECAr020 NC_004547.2 4741828 4741947 R 5S ribosomal RNA complement(4741828..4741947) Pectobacterium atrosepticum SCRI1043 2881302 ECAr021 rRNA ECAr021 NC_004547.2 4742075 4744982 R 23S ribosomal RNA complement(4742075..4744982) Pectobacterium atrosepticum SCRI1043 2881303 ECAr022 rRNA ECAr022 NC_004547.2 4745428 4746970 R 16S ribosomal RNA complement(4745428..4746970) Pectobacterium atrosepticum SCRI1043 2882071