-- dump date 20140619_231544 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 402881000001 SEQ_END SEQ_END NC_009719.1 3914745 3914745 DR NC_009719.1; contig end 3914745..3914745 Parvibaculum lavamentivorans DS-1 YP_001411281.1 CDS Plav_0001 NC_009719.1 179 442 D PFAM: ribosomal protein S20; KEGG: mes:Meso_4102 ribosomal protein S20; 30S ribosomal protein S20 179..442 Parvibaculum lavamentivorans DS-1 5456835 YP_001411282.1 CDS Plav_0002 NC_009719.1 1023 1472 D SMART: Rhodanese domain protein; KEGG: mag:amb2208 rhodanese-related sulfurtransferase; rhodanese domain-containing protein 1023..1472 Parvibaculum lavamentivorans DS-1 5453451 YP_001411283.1 CDS Plav_0003 NC_009719.1 1568 3127 D TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; KEGG: mag:amb0636 ATPase; chromosomal replication initiator protein DnaA 1568..3127 Parvibaculum lavamentivorans DS-1 5453797 YP_001411284.1 CDS Plav_0004 NC_009719.1 3525 4643 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3525..4643 Parvibaculum lavamentivorans DS-1 5456508 YP_001411285.1 CDS Plav_0005 NC_009719.1 4682 5920 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; SMART: AAA ATPase; KEGG: mes:Meso_0003 DNA replication and repair protein RecF; DNA replication and repair protein RecF 4682..5920 Parvibaculum lavamentivorans DS-1 5454418 YP_001411286.1 CDS Plav_0006 NC_009719.1 5920 6519 D PFAM: peptidase S14 ClpP; KEGG: hne:HNE_0542 putative ATP-dependent Clp protease, proteolytic subunit ClpP; endopeptidase Clp 5920..6519 Parvibaculum lavamentivorans DS-1 5455632 YP_001411287.1 CDS Plav_0007 NC_009719.1 6541 8985 D KEGG: mes:Meso_3603 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 6541..8985 Parvibaculum lavamentivorans DS-1 5455210 YP_001411288.1 CDS Plav_0008 NC_009719.1 9139 11466 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: bja:bll0910 penicillin-binding protein; 1A family penicillin-binding protein 9139..11466 Parvibaculum lavamentivorans DS-1 5455107 YP_001411289.1 CDS Plav_0009 NC_009719.1 11463 12647 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: maq:Maqu_3797 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(11463..12647) Parvibaculum lavamentivorans DS-1 5454408 YP_001411290.1 CDS Plav_0010 NC_009719.1 12644 13456 R PFAM: protein of unknown function DUF45; KEGG: rru:Rru_A3354 protein of unknown function DUF45; hypothetical protein complement(12644..13456) Parvibaculum lavamentivorans DS-1 5456300 YP_001411291.1 CDS Plav_0011 NC_009719.1 13550 13993 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_4906 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 13550..13993 Parvibaculum lavamentivorans DS-1 5456163 YP_001411292.1 CDS Plav_0012 NC_009719.1 13995 15233 R TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rpd:RPD_0126 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase complement(13995..15233) Parvibaculum lavamentivorans DS-1 5456184 YP_001411293.1 CDS Plav_0013 NC_009719.1 15461 17152 R TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: bxe:Bxe_A1435 yeast 2-isopropylmalate synthase; 2-isopropylmalate synthase complement(15461..17152) Parvibaculum lavamentivorans DS-1 5456646 YP_001411294.1 CDS Plav_0014 NC_009719.1 17438 18049 R PFAM: electron transport protein SCO1/SenC; KEGG: rru:Rru_A3360 electron transport protein SCO1/SenC; Classical-complement-pathway C3/C5 convertase complement(17438..18049) Parvibaculum lavamentivorans DS-1 5456205 YP_001411295.1 CDS Plav_0015 NC_009719.1 18219 18803 D PFAM: Ankyrin; KEGG: sru:SRU_2404 hypothetical protein; ankyrin 18219..18803 Parvibaculum lavamentivorans DS-1 5456714 YP_001411296.1 CDS Plav_0016 NC_009719.1 18899 19969 D KEGG: ftw:FTW_2008 hypothetical protein; hypothetical protein 18899..19969 Parvibaculum lavamentivorans DS-1 5453662 YP_001411297.1 CDS Plav_0017 NC_009719.1 20068 21474 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bmb:BruAb1_0130 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 20068..21474 Parvibaculum lavamentivorans DS-1 5455512 YP_001411298.1 CDS Plav_0018 NC_009719.1 21475 22101 D PFAM: response regulator receiver; KEGG: mes:Meso_4041 response regulator receiver protein; two component Fis family transcriptional regulator 21475..22101 Parvibaculum lavamentivorans DS-1 5456310 YP_001411299.1 CDS Plav_0019 NC_009719.1 22104 22400 R TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: gur:Gura_1216 plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein complement(22104..22400) Parvibaculum lavamentivorans DS-1 5456085 YP_001411300.1 CDS Plav_0020 NC_009719.1 22425 22703 R PFAM: plasmid maintenance system killer; KEGG: rpc:RPC_4140 plasmid maintenance system killer; plasmid maintenance system killer protein complement(22425..22703) Parvibaculum lavamentivorans DS-1 5453843 YP_001411301.1 CDS Plav_0021 NC_009719.1 22748 23236 R PFAM: protein of unknown function DUF1052; KEGG: hypothetical protein; hypothetical protein complement(22748..23236) Parvibaculum lavamentivorans DS-1 5453952 YP_001411302.1 CDS Plav_0022 NC_009719.1 23247 24209 R PFAM: aminoglycoside phosphotransferase; KEGG: mxa:MXAN_0104 aminoglycoside phosphotransferase family protein; aminoglycoside phosphotransferase complement(23247..24209) Parvibaculum lavamentivorans DS-1 5456781 YP_001411303.1 CDS Plav_0023 NC_009719.1 24241 25362 R KEGG: abo:ABO_1416 hypothetical protein; hypothetical protein complement(24241..25362) Parvibaculum lavamentivorans DS-1 5453916 YP_001411304.1 CDS Plav_0024 NC_009719.1 25618 26940 D KEGG: rru:Rru_A3761 hypothetical protein; hypothetical protein 25618..26940 Parvibaculum lavamentivorans DS-1 5453564 YP_001411305.1 CDS Plav_0025 NC_009719.1 27133 28401 D PFAM: cytochrome P450; KEGG: cytochrome P450 family protein; cytochrome P450 27133..28401 Parvibaculum lavamentivorans DS-1 5456616 YP_001411306.1 CDS Plav_0026 NC_009719.1 28472 29842 D KEGG: hypothetical protein; hypothetical protein 28472..29842 Parvibaculum lavamentivorans DS-1 5456287 YP_001411307.1 CDS Plav_0027 NC_009719.1 30314 32665 D KEGG: azo:azo2253 probable exporter of RND superfamily; RND superfamily exporter 30314..32665 Parvibaculum lavamentivorans DS-1 5455109 YP_001411308.1 CDS Plav_0028 NC_009719.1 32770 33618 D PFAM: Sterol desaturase; KEGG: atc:AGR_C_556 hypothetical protein; sterol desaturase 32770..33618 Parvibaculum lavamentivorans DS-1 5455733 YP_001411309.1 CDS Plav_0029 NC_009719.1 33622 34875 R PFAM: cytochrome P450; KEGG: aci:ACIAD1575 linalool 8-monooxygenase (cytochrome P450 111) (cytochrome P450lin); cytochrome P450 complement(33622..34875) Parvibaculum lavamentivorans DS-1 5456945 YP_001411310.1 CDS Plav_0030 NC_009719.1 34929 35570 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hydrolase, haloacid dehalogenase-like family; K07025 putative hydrolase of the HAD superfamily; HAD family phosphatase complement(34929..35570) Parvibaculum lavamentivorans DS-1 5453814 YP_001411311.1 CDS Plav_0031 NC_009719.1 35655 36659 R PFAM: Sporulation domain protein; KEGG: rpe:RPE_2692 sporulation domain protein; sporulation domain-containing protein complement(35655..36659) Parvibaculum lavamentivorans DS-1 5454469 YP_001411312.1 CDS Plav_0032 NC_009719.1 36659 37363 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nar:Saro_3065 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(36659..37363) Parvibaculum lavamentivorans DS-1 5455688 YP_001411313.1 CDS Plav_0033 NC_009719.1 37628 38929 R TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: gox:GOX0719 adenosylmethionine--8-amino-7-oxononanoate transaminase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(37628..38929) Parvibaculum lavamentivorans DS-1 5453654 YP_001411314.1 CDS Plav_0034 NC_009719.1 39183 39785 D KEGG: mxa:MXAN_0975 hypothetical protein; hypothetical protein 39183..39785 Parvibaculum lavamentivorans DS-1 5455020 YP_001411315.1 CDS Plav_0035 NC_009719.1 39782 40132 D KEGG: hypothetical protein; hypothetical protein 39782..40132 Parvibaculum lavamentivorans DS-1 5455068 YP_001411316.1 CDS Plav_0036 NC_009719.1 40109 41215 R KEGG: sde:Sde_3139 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(40109..41215) Parvibaculum lavamentivorans DS-1 5454827 YP_001411317.1 CDS Plav_0037 NC_009719.1 41259 41918 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: mmr:Mmar10_1675 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(41259..41918) Parvibaculum lavamentivorans DS-1 5455340 YP_001411318.1 CDS Plav_0038 NC_009719.1 42013 42885 D KEGG: mmr:Mmar10_1676 hypothetical protein; hypothetical protein 42013..42885 Parvibaculum lavamentivorans DS-1 5456811 YP_001411319.1 CDS Plav_0039 NC_009719.1 42959 44146 D TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; KEGG: acr:Acry_1868 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 42959..44146 Parvibaculum lavamentivorans DS-1 5455540 YP_001411320.1 CDS Plav_0040 NC_009719.1 44147 44794 D TIGRFAM: dethiobiotin synthase; KEGG: acr:Acry_1867 dethiobiotin synthase; dethiobiotin synthase 44147..44794 Parvibaculum lavamentivorans DS-1 5456055 YP_001411321.1 CDS Plav_0041 NC_009719.1 44796 45086 R KEGG: ftn:FTN_0314 hypothetical protein; hypothetical protein complement(44796..45086) Parvibaculum lavamentivorans DS-1 5456172 YP_001411322.1 CDS Plav_0042 NC_009719.1 45161 45340 R KEGG: rfr:Rfer_1454 hypothetical protein; hypothetical protein complement(45161..45340) Parvibaculum lavamentivorans DS-1 5456133 YP_001411323.1 CDS Plav_0043 NC_009719.1 45433 45948 R TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: mac:MA4322 methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(45433..45948) Parvibaculum lavamentivorans DS-1 5453718 YP_001411324.1 CDS Plav_0044 NC_009719.1 45950 47491 R PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: rru:Rru_A3357 transcriptional regulator, AraC family; Ada metal-binding domain-containing protein complement(45950..47491) Parvibaculum lavamentivorans DS-1 5455529 YP_001411325.1 CDS Plav_0045 NC_009719.1 47696 49030 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pat:Patl_3455 major facilitator superfamily MFS_1; major facilitator superfamily transporter 47696..49030 Parvibaculum lavamentivorans DS-1 5455890 YP_001411326.1 CDS Plav_0046 NC_009719.1 49183 50193 D TIGRFAM: Alcohol dehydrogenase zinc-binding type 2; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_0056 alcohol dehydrogenase GroES-like protein; alcohol dehydrogenase zinc-binding type 2 49183..50193 Parvibaculum lavamentivorans DS-1 5453749 YP_001411327.1 CDS Plav_0047 NC_009719.1 50270 51079 D KEGG: psa:PST_4027 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate ABC transporter substrate-binding protein 50270..51079 Parvibaculum lavamentivorans DS-1 5454868 YP_001411328.1 CDS Plav_0048 NC_009719.1 51324 52721 R PFAM: phosphate-selective porin O and P; KEGG: bja:blr5369 outer membrane porin; phosphate-selective porin O and P complement(51324..52721) Parvibaculum lavamentivorans DS-1 5455967 YP_001411329.1 CDS Plav_0049 NC_009719.1 53032 54252 R PFAM: OsmC family protein; KEGG: sme:SMa1898 putative redox protein; OsmC family protein complement(53032..54252) Parvibaculum lavamentivorans DS-1 5455950 YP_001411330.1 CDS Plav_0050 NC_009719.1 54466 55257 D PFAM: PRC-barrel domain protein; KEGG: hne:HNE_2890 hypothetical protein; PRC-barrel domain-containing protein 54466..55257 Parvibaculum lavamentivorans DS-1 5454371 YP_001411331.1 CDS Plav_0051 NC_009719.1 55568 57325 R PFAM: histidine kinase HAMP region domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: rsh:Rsph17029_2929 signal transduction histidine kinase; signal transduction histidine kinase complement(55568..57325) Parvibaculum lavamentivorans DS-1 5456339 YP_001411332.1 CDS Plav_0052 NC_009719.1 57786 58580 D in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator 57786..58580 Parvibaculum lavamentivorans DS-1 5453661 YP_001411333.1 CDS Plav_0053 NC_009719.1 58670 59275 R TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: swi:Swit_3924 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(58670..59275) Parvibaculum lavamentivorans DS-1 5455453 YP_001411334.1 CDS Plav_0054 NC_009719.1 59281 59502 R hypothetical protein complement(59281..59502) Parvibaculum lavamentivorans DS-1 5455594 YP_001411335.1 CDS Plav_0055 NC_009719.1 59742 59939 R PFAM: CsbD family protein; KEGG: mlo:msl9551 hypothetical protein; CsbD family protein complement(59742..59939) Parvibaculum lavamentivorans DS-1 5455966 YP_001411336.1 CDS Plav_0056 NC_009719.1 60108 60284 R PFAM: protein of unknown function DUF1328; KEGG: mes:Meso_3110 protein of unknown function DUF1328; hypothetical protein complement(60108..60284) Parvibaculum lavamentivorans DS-1 5453569 YP_001411337.1 CDS Plav_0057 NC_009719.1 60343 60558 R PFAM: Entericidin EcnAB; KEGG: hypothetical protein; entericidin EcnAB complement(60343..60558) Parvibaculum lavamentivorans DS-1 5454274 YP_001411338.1 CDS Plav_0058 NC_009719.1 60579 61100 R PFAM: MgtC/SapB transporter; KEGG: mes:Meso_3446 MgtC/SapB transporter; MgtC/SapB transporter complement(60579..61100) Parvibaculum lavamentivorans DS-1 5453969 YP_001411339.1 CDS Plav_0059 NC_009719.1 61164 61439 R hypothetical protein complement(61164..61439) Parvibaculum lavamentivorans DS-1 5455741 YP_001411340.1 CDS Plav_0060 NC_009719.1 61602 61832 D KEGG: azo:azo1749 conserved hypothetical membrane protein; hypothetical protein 61602..61832 Parvibaculum lavamentivorans DS-1 5454375 YP_001411341.1 CDS Plav_0061 NC_009719.1 61859 62464 R PFAM: MOSC domain containing protein; KEGG: rpe:RPE_1637 MOSC domain containing protein; MOSC domain-containing protein complement(61859..62464) Parvibaculum lavamentivorans DS-1 5456293 YP_001411342.1 CDS Plav_0062 NC_009719.1 62801 63292 D KEGG: rpb:RPB_0921 hypothetical protein; hypothetical protein 62801..63292 Parvibaculum lavamentivorans DS-1 5453934 YP_001411343.1 CDS Plav_0063 NC_009719.1 63308 63760 R hypothetical protein complement(63308..63760) Parvibaculum lavamentivorans DS-1 5455048 YP_001411344.1 CDS Plav_0064 NC_009719.1 63853 64227 R PFAM: response regulator receiver; KEGG: mgi:Mflv_1744 two component transcriptional regulator, winged helix family; response regulator receiver protein complement(63853..64227) Parvibaculum lavamentivorans DS-1 5455584 YP_001411345.1 CDS Plav_0065 NC_009719.1 64350 64739 R PFAM: response regulator receiver; KEGG: sbl:Sbal_2050 two component transcriptional regulator, winged helix family; response regulator receiver protein complement(64350..64739) Parvibaculum lavamentivorans DS-1 5456089 YP_001411346.1 CDS Plav_0066 NC_009719.1 64830 66530 R KEGG: nwi:Nwi_2535 hypothetical protein; hypothetical protein complement(64830..66530) Parvibaculum lavamentivorans DS-1 5453877 YP_001411347.1 CDS Plav_0067 NC_009719.1 66777 67808 D KEGG: bch:Bcen2424_6766 PE-PGRS family protein; PE-PGRS family protein 66777..67808 Parvibaculum lavamentivorans DS-1 5456415 YP_001411348.1 CDS Plav_0068 NC_009719.1 67908 69587 R PFAM: surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: bcn:Bcen_1034 polypeptide-transport-associated, ShlB-type; polypeptide-transport-associated domain-containing protein complement(67908..69587) Parvibaculum lavamentivorans DS-1 5454363 YP_001411349.1 CDS Plav_0069 NC_009719.1 70095 71048 D PFAM: SAF domain protein; KEGG: bcn:Bcen_1040 Flp pilus assembly CpaB; SAF domain-containing protein 70095..71048 Parvibaculum lavamentivorans DS-1 5456534 YP_001411350.1 CDS Plav_0070 NC_009719.1 71065 72450 D PFAM: type II and III secretion system protein; transport-associated; KEGG: swi:Swit_3514 type II and III secretion system protein; type II and III secretion system protein 71065..72450 Parvibaculum lavamentivorans DS-1 5455094 YP_001411351.1 CDS Plav_0071 NC_009719.1 72457 73650 D PFAM: response regulator receiver; KEGG: rme:Rmet_3655 response regulator receiver domain protein (CheY-like); response regulator receiver protein 72457..73650 Parvibaculum lavamentivorans DS-1 5455559 YP_001411352.1 CDS Plav_0072 NC_009719.1 73647 74873 D PFAM: type II secretion system protein E; KEGG: swi:Swit_3512 type II secretion system protein E; type II secretion system protein E 73647..74873 Parvibaculum lavamentivorans DS-1 5455261 YP_001411353.1 CDS Plav_0073 NC_009719.1 74940 75815 D PFAM: type II secretion system protein; KEGG: swi:Swit_3511 type II secretion system protein; type II secretion system protein 74940..75815 Parvibaculum lavamentivorans DS-1 5455664 YP_001411354.1 CDS Plav_0074 NC_009719.1 75821 76768 D PFAM: type II secretion system protein; KEGG: swi:Swit_3510 type II secretion system protein; type II secretion system protein 75821..76768 Parvibaculum lavamentivorans DS-1 5455868 YP_001411355.1 CDS Plav_0075 NC_009719.1 76765 77478 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bam:Bamb_1408 tetratricopeptide TPR_2 repeat protein; hypothetical protein 76765..77478 Parvibaculum lavamentivorans DS-1 5456374 YP_001411356.1 CDS Plav_0076 NC_009719.1 77478 77720 D hypothetical protein 77478..77720 Parvibaculum lavamentivorans DS-1 5455832 YP_001411357.1 CDS Plav_0077 NC_009719.1 77865 78155 D PFAM: Flp/Fap pilin component; KEGG: rpd:RPD_3517 Flp/Fap pilin component; Flp/Fap pilin component 77865..78155 Parvibaculum lavamentivorans DS-1 5455881 YP_001411358.1 CDS Plav_0078 NC_009719.1 78243 78665 D PFAM: TadE family protein; KEGG: nca:Noca_3251 TadE family protein; TadE family protein 78243..78665 Parvibaculum lavamentivorans DS-1 5456217 YP_001411359.1 CDS Plav_0079 NC_009719.1 78675 80807 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: psp:PSPPH_4416 sensory box histidine kinase; histidine kinase 78675..80807 Parvibaculum lavamentivorans DS-1 5456552 YP_001411360.1 CDS Plav_0080 NC_009719.1 80820 81593 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: gox:GOX1600 two component response regulator; two component transcriptional regulator complement(80820..81593) Parvibaculum lavamentivorans DS-1 5453868 YP_001411361.1 CDS Plav_0081 NC_009719.1 82194 82613 R hypothetical protein complement(82194..82613) Parvibaculum lavamentivorans DS-1 5456515 YP_001411362.1 CDS Plav_0082 NC_009719.1 82741 84153 R PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein; cytochrome P450 complement(82741..84153) Parvibaculum lavamentivorans DS-1 5454601 YP_001411363.1 CDS Plav_0083 NC_009719.1 84177 85025 R KEGG: pmy:Pmen_3653 metal-dependent hydrolase-like protein; metal-dependent hydrolase-like protein complement(84177..85025) Parvibaculum lavamentivorans DS-1 5454760 YP_001411364.1 CDS Plav_0084 NC_009719.1 85148 86212 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pau:PA14_53520 transcriptional regulator OruR; helix-turn-helix domain-containing protein 85148..86212 Parvibaculum lavamentivorans DS-1 5456933 YP_001411365.1 CDS Plav_0085 NC_009719.1 86257 87141 D KEGG: bxe:Bxe_A2804 putative membrane protein, glycine-rich; putative membrane protein, glycine-rich 86257..87141 Parvibaculum lavamentivorans DS-1 5454352 YP_001411366.1 CDS Plav_0086 NC_009719.1 87350 88216 D KEGG: bam:Bamb_1398 hypothetical protein; hypothetical protein 87350..88216 Parvibaculum lavamentivorans DS-1 5456978 YP_001411367.1 CDS Plav_0087 NC_009719.1 88270 90267 D PFAM: protein of unknown function DUF1302; KEGG: pau:PA14_13130 hypothetical protein; hypothetical protein 88270..90267 Parvibaculum lavamentivorans DS-1 5454796 YP_001411368.1 CDS Plav_0088 NC_009719.1 90359 91024 R PFAM: regulatory protein TetR; KEGG: hne:HNE_2401 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(90359..91024) Parvibaculum lavamentivorans DS-1 5456715 YP_001411369.1 CDS Plav_0089 NC_009719.1 91116 92222 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hne:HNE_2119 aryl-alcohol dehydrogenase; alcohol dehydrogenase 91116..92222 Parvibaculum lavamentivorans DS-1 5456207 YP_001411370.1 CDS Plav_0090 NC_009719.1 92262 93506 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 92262..93506 Parvibaculum lavamentivorans DS-1 5456737 YP_001411371.1 CDS Plav_0091 NC_009719.1 93572 93988 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: transcriptional regulator, putative; MerR family transcriptional regulator 93572..93988 Parvibaculum lavamentivorans DS-1 5454547 YP_001411372.1 CDS Plav_0092 NC_009719.1 94039 95442 D PFAM: aldehyde dehydrogenase; KEGG: bbt:BBta_3845 putative aldehyde dehydrogenase family protein; aldehyde dehydrogenase 94039..95442 Parvibaculum lavamentivorans DS-1 5456355 YP_001411373.1 CDS Plav_0093 NC_009719.1 95540 96799 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: pfl:PFL_2917 oxidoreductase, FAD-binding; ferric reductase domain-containing protein complement(95540..96799) Parvibaculum lavamentivorans DS-1 5453538 YP_001411374.1 CDS Plav_0094 NC_009719.1 96883 97236 R PFAM: protein of unknown function DUF454; KEGG: sal:Sala_1520 protein of unknown function DUF454; hypothetical protein complement(96883..97236) Parvibaculum lavamentivorans DS-1 5456689 YP_001411375.1 CDS Plav_0095 NC_009719.1 97370 98962 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(97370..98962) Parvibaculum lavamentivorans DS-1 5455864 YP_001411376.1 CDS Plav_0096 NC_009719.1 98980 100665 R TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: zmo:ZMO1681 aspartate:alanine antiporter; YidE/YbjL protein complement(98980..100665) Parvibaculum lavamentivorans DS-1 5454616 YP_001411377.1 CDS Plav_0097 NC_009719.1 104498 104803 R TIGRFAM: CRISPR-associated protein Cas2; KEGG: bfs:BF3950 hypothetical protein; CRISPR-associated Cas2 family protein complement(104498..104803) Parvibaculum lavamentivorans DS-1 5454020 YP_001411378.1 CDS Plav_0098 NC_009719.1 104851 105786 R TIGRFAM: CRISPR-associated protein Cas1; KEGG: bfs:BF3951 hypothetical protein; CRISPR-associated Cas1 family protein complement(104851..105786) Parvibaculum lavamentivorans DS-1 5453585 YP_001411379.1 CDS Plav_0099 NC_009719.1 105795 108908 R TIGRFAM: CRISPR-associated protein, Csn1 family; KEGG: vei:Veis_1230 CRISPR-associated protein, Csn1 family; CRISPR-associated endonuclease Csn1 family protein complement(105795..108908) Parvibaculum lavamentivorans DS-1 5454634 YP_001411380.1 CDS Plav_0100 NC_009719.1 109701 110807 D KEGG: deb:DehaBAV1_0084 hypothetical protein; hypothetical protein 109701..110807 Parvibaculum lavamentivorans DS-1 5453801 YP_001411381.1 CDS Plav_0101 NC_009719.1 110801 111049 D hypothetical protein 110801..111049 Parvibaculum lavamentivorans DS-1 5455079 YP_001411382.1 CDS Plav_0102 NC_009719.1 111209 112822 D PFAM: Resolvase domain; Recombinase; KEGG: nha:Nham_0568 recombinase; resolvase domain-containing protein 111209..112822 Parvibaculum lavamentivorans DS-1 5454218 YP_001411383.1 CDS Plav_0103 NC_009719.1 113053 113553 D PFAM: protein of unknown function DUF1457; KEGG: sme:SMc01000 hypothetical protein; hypothetical protein 113053..113553 Parvibaculum lavamentivorans DS-1 5453517 YP_001411384.1 CDS Plav_0104 NC_009719.1 113555 114556 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hne:HNE_1881 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(113555..114556) Parvibaculum lavamentivorans DS-1 5453367 YP_001411385.1 CDS Plav_0105 NC_009719.1 114688 117627 D KEGG: bme:BMEI1825 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I 114688..117627 Parvibaculum lavamentivorans DS-1 5454288 YP_001411386.1 CDS Plav_0106 NC_009719.1 117683 117991 D KEGG: mes:Meso_2799 hypothetical protein; hypothetical protein 117683..117991 Parvibaculum lavamentivorans DS-1 5453466 YP_001411387.1 CDS Plav_0107 NC_009719.1 118052 118792 R KEGG: pau:PA14_14140 hypothetical protein; hypothetical protein complement(118052..118792) Parvibaculum lavamentivorans DS-1 5455900 YP_001411388.1 CDS Plav_0108 NC_009719.1 118896 119618 D PFAM: Helix-turn-helix type 11 domain protein; KEGG: mlo:mlr3764 transcriptional regulator(repressor protein); helix-turn-helix domain-containing protein 118896..119618 Parvibaculum lavamentivorans DS-1 5454182 YP_001411389.1 CDS Plav_0109 NC_009719.1 119678 121291 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(119678..121291) Parvibaculum lavamentivorans DS-1 5454672 YP_001411390.1 CDS Plav_0110 NC_009719.1 121739 123388 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mxa:MXAN_2289 peptidase, M20E (Gly-X carboxypeptidase) subfamily; hypothetical protein complement(121739..123388) Parvibaculum lavamentivorans DS-1 5455051 YP_001411391.1 CDS Plav_0111 NC_009719.1 123573 124274 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mes:Meso_3571 two component transcriptional regulator, winged helix family; two component transcriptional regulator 123573..124274 Parvibaculum lavamentivorans DS-1 5455415 YP_001411392.1 CDS Plav_0112 NC_009719.1 124320 126167 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sme:SMc04446 histidine kinase sensory transmembrane protein; integral membrane sensor signal transduction histidine kinase 124320..126167 Parvibaculum lavamentivorans DS-1 5454332 YP_001411393.1 CDS Plav_0113 NC_009719.1 126173 126649 D KEGG: rru:Rru_A3449 HPr kinase; HPr kinase 126173..126649 Parvibaculum lavamentivorans DS-1 5456187 YP_001411394.1 CDS Plav_0114 NC_009719.1 126847 127254 D PFAM: PTS system fructose subfamily IIA component; KEGG: mag:amb4395 phosphotransferase system, mannose/fructose-specific component IIA; PTS system fructose subfamily transporter subunit IIA 126847..127254 Parvibaculum lavamentivorans DS-1 5455024 YP_001411395.1 CDS Plav_0115 NC_009719.1 127257 127562 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: bov:BOV_2014 phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 127257..127562 Parvibaculum lavamentivorans DS-1 5456353 YP_001411396.1 CDS Plav_0116 NC_009719.1 127564 128388 R KEGG: rme:Rmet_0145 hypothetical protein; hypothetical protein complement(127564..128388) Parvibaculum lavamentivorans DS-1 5453353 YP_001411397.1 CDS Plav_0117 NC_009719.1 128691 130109 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 128691..130109 Parvibaculum lavamentivorans DS-1 5454161 YP_001411398.1 CDS Plav_0118 NC_009719.1 130284 132869 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: nha:Nham_0053 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 130284..132869 Parvibaculum lavamentivorans DS-1 5453831 YP_001411399.1 CDS Plav_0119 NC_009719.1 133088 133387 R KEGG: rpc:RPC_0601 hypothetical protein; hypothetical protein complement(133088..133387) Parvibaculum lavamentivorans DS-1 5453744 YP_001411400.1 CDS Plav_0120 NC_009719.1 133384 133788 R hypothetical protein complement(133384..133788) Parvibaculum lavamentivorans DS-1 5453686 YP_001411401.1 CDS Plav_0121 NC_009719.1 133957 134691 D KEGG: pol:Bpro_3007 glutathione S-transferase-like; glutathione S-transferase-like protein 133957..134691 Parvibaculum lavamentivorans DS-1 5455083 YP_001411402.1 CDS Plav_0122 NC_009719.1 134821 135360 R PFAM: superoxide dismutase copper/zinc binding; KEGG: superoxide dismutase, Cu-Zn; copper/zinc binding superoxide dismutase complement(134821..135360) Parvibaculum lavamentivorans DS-1 5454607 YP_001411403.1 CDS Plav_0123 NC_009719.1 135657 136124 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rso:RSc1890 probable isoquinoline 1-oxidoreductase (alpha subunit) oxidoreductase protein; 2Fe-2S iron-sulfur cluster-binding domain-containing protein 135657..136124 Parvibaculum lavamentivorans DS-1 5456728 YP_001411404.1 CDS Plav_0124 NC_009719.1 136138 138402 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: eli:ELI_11225 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase 136138..138402 Parvibaculum lavamentivorans DS-1 5454510 YP_001411405.1 CDS Plav_0125 NC_009719.1 138461 138850 R hypothetical protein complement(138461..138850) Parvibaculum lavamentivorans DS-1 5455883 YP_001411406.1 CDS Plav_0126 NC_009719.1 138911 139231 R PFAM: ferredoxin; KEGG: ferredoxin, 2Fe-2S; K04755 ferredoxin, 2Fe-2S; ferredoxin complement(138911..139231) Parvibaculum lavamentivorans DS-1 5454144 YP_001411407.1 CDS Plav_0127 NC_009719.1 139296 140516 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_5300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(139296..140516) Parvibaculum lavamentivorans DS-1 5455517 YP_001411408.1 CDS Plav_0128 NC_009719.1 141576 142709 R KEGG: sit:TM1040_3368 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway)-like; 2-keto-4-pentenoate hydratase complement(141576..142709) Parvibaculum lavamentivorans DS-1 5455132 YP_001411409.1 CDS Plav_0129 NC_009719.1 142720 143169 R KEGG: mjl:Mjls_2634 hypothetical protein; hypothetical protein complement(142720..143169) Parvibaculum lavamentivorans DS-1 5454888 YP_001411410.1 CDS Plav_0130 NC_009719.1 143180 143959 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0589 putative short-chain dehydrogenase/reductase; short-chain dehydrogenase/reductase SDR complement(143180..143959) Parvibaculum lavamentivorans DS-1 5453531 YP_001411411.1 CDS Plav_0131 NC_009719.1 143979 145649 R PFAM: monooxygenase FAD-binding; KEGG: rha:RHA1_ro10313 probable 2,4-dichlorophenol 6-monooxygenase; 2,4-dichlorophenol 6-monooxygenase complement(143979..145649) Parvibaculum lavamentivorans DS-1 5454129 YP_001411412.1 CDS Plav_0132 NC_009719.1 145741 146355 D PFAM: regulatory protein TetR; KEGG: mlo:mll2397 probable transcriptional regulator; TetR family transcriptional regulator 145741..146355 Parvibaculum lavamentivorans DS-1 5453940 YP_001411413.1 CDS Plav_0133 NC_009719.1 146548 147027 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rpa:RPA1115 hypothetical protein; alkylhydroperoxidase 146548..147027 Parvibaculum lavamentivorans DS-1 5455369 YP_001411414.1 CDS Plav_0134 NC_009719.1 147089 147583 D PFAM: protein of unknown function UPF0079; KEGG: bmb:BruAb1_2075 conserved hypothetical protein TIGR00150; hypothetical protein 147089..147583 Parvibaculum lavamentivorans DS-1 5454364 YP_001411415.1 CDS Plav_0135 NC_009719.1 147580 148668 D PFAM: aminoglycoside phosphotransferase; KEGG: atc:AGR_C_43 unknown; aminoglycoside phosphotransferase 147580..148668 Parvibaculum lavamentivorans DS-1 5455709 YP_001411416.1 CDS Plav_0136 NC_009719.1 148665 149375 D PFAM: Nucleotidyl transferase; KEGG: bja:bll0754 nucleotidyltransferase family protein; nucleotidyl transferase 148665..149375 Parvibaculum lavamentivorans DS-1 5454667 YP_001411417.1 CDS Plav_0137 NC_009719.1 149401 152406 D TIGRFAM: Double-strand break repair protein AddB; KEGG: mag:amb0421 inactivated superfamily I helicase; double-strand break repair protein AddB 149401..152406 Parvibaculum lavamentivorans DS-1 5455859 YP_001411418.1 CDS Plav_0138 NC_009719.1 152403 155873 D TIGRFAM: Double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: mag:amb4162 ATP-dependent exoDNAse beta subunit; double-strand break repair helicase AddA 152403..155873 Parvibaculum lavamentivorans DS-1 5454433 YP_001411419.1 CDS Plav_0139 NC_009719.1 155990 156310 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mag:amb4286 thiol-disulfide isomerase and thioredoxins; thioredoxin 155990..156310 Parvibaculum lavamentivorans DS-1 5455630 YP_001411420.1 CDS Plav_0140 NC_009719.1 156365 157699 R TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rsh:Rsph17029_2589 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(156365..157699) Parvibaculum lavamentivorans DS-1 5454562 YP_001411421.1 CDS Plav_0141 NC_009719.1 157696 158610 R TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: rpb:RPB_0633 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(157696..158610) Parvibaculum lavamentivorans DS-1 5456022 YP_001411422.1 CDS Plav_0142 NC_009719.1 158621 159460 R TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; KEGG: rpe:RPE_0455 tryptophan synthase, alpha subunit; tryptophan synthase subunit alpha complement(158621..159460) Parvibaculum lavamentivorans DS-1 5455203 YP_001411423.1 CDS Plav_0143 NC_009719.1 159457 160674 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(159457..160674) Parvibaculum lavamentivorans DS-1 5455049 YP_001411424.1 CDS Plav_0144 NC_009719.1 160702 161349 R PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: rpa:RPA0068 putative N-(5'-phosphoribosyl)anthranilate isomerase; phosphoribosylanthranilate isomerase complement(160702..161349) Parvibaculum lavamentivorans DS-1 5454899 YP_001411425.1 CDS Plav_0145 NC_009719.1 161354 162055 R TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: rru:Rru_A3424 orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(161354..162055) Parvibaculum lavamentivorans DS-1 5456419 YP_001411426.1 CDS Plav_0146 NC_009719.1 162125 162412 R KEGG: bbt:BBta_0099 putative exported protein of unknown function; hypothetical protein complement(162125..162412) Parvibaculum lavamentivorans DS-1 5454758 YP_001411427.1 CDS Plav_0147 NC_009719.1 162448 162780 R TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: mag:amb4004 bacterial nucleoid DNA-binding protein; integration host factor subunit beta complement(162448..162780) Parvibaculum lavamentivorans DS-1 5454050 YP_001411428.1 CDS Plav_0148 NC_009719.1 162854 163798 R TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: rpc:RPC_0396 signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 36K type complement(162854..163798) Parvibaculum lavamentivorans DS-1 5454902 YP_001411429.1 CDS rpsA NC_009719.1 163938 165647 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(163938..165647) Parvibaculum lavamentivorans DS-1 5455959 YP_001411430.1 CDS Plav_0150 NC_009719.1 165844 166497 R TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: rpa:RPA0063 cytidylate monophosphate kinase; cytidylate kinase complement(165844..166497) Parvibaculum lavamentivorans DS-1 5454709 YP_001411431.1 CDS Plav_0151 NC_009719.1 166494 167849 R TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: rsh:Rsph17029_3277 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase complement(166494..167849) Parvibaculum lavamentivorans DS-1 5454019 YP_001411432.1 CDS Plav_0152 NC_009719.1 167971 168447 D KEGG: bov:BOV_0023 hypothetical protein; hypothetical protein 167971..168447 Parvibaculum lavamentivorans DS-1 5455114 YP_001411433.1 CDS Plav_0153 NC_009719.1 168681 169313 R PFAM: regulatory protein TetR; KEGG: pol:Bpro_3836 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(168681..169313) Parvibaculum lavamentivorans DS-1 5454219 YP_001411434.1 CDS Plav_0154 NC_009719.1 169440 171002 D PFAM: AMP-dependent synthetase and ligase; KEGG: msm:MSMEG_4065 feruloyl-CoA synthetase; AMP-dependent synthetase and ligase 169440..171002 Parvibaculum lavamentivorans DS-1 5455243 YP_001411435.1 CDS Plav_0155 NC_009719.1 171020 172207 D PFAM: Thiolase; KEGG: rme:Rmet_5826 thiolase; lipid-transfer protein 171020..172207 Parvibaculum lavamentivorans DS-1 5453829 YP_001411436.1 CDS Plav_0156 NC_009719.1 172213 172656 D KEGG: rpd:RPD_3813 hypothetical protein; hypothetical protein 172213..172656 Parvibaculum lavamentivorans DS-1 5454334 YP_001411437.1 CDS Plav_0157 NC_009719.1 172668 173081 D PFAM: MaoC domain protein dehydratase; KEGG: rpa:RPA3303 MaoC-like dehydratase; dehydratase 172668..173081 Parvibaculum lavamentivorans DS-1 5454584 YP_001411438.1 CDS Plav_0158 NC_009719.1 173099 173929 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpb:RPB_4075 3-oxoacyl-acyl carrier protein reductase; short-chain dehydrogenase/reductase SDR 173099..173929 Parvibaculum lavamentivorans DS-1 5454088 YP_001411439.1 CDS Plav_0159 NC_009719.1 173954 174976 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: rrs:RoseRS_0979 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(173954..174976) Parvibaculum lavamentivorans DS-1 5456503 YP_001411440.1 CDS Plav_0160 NC_009719.1 175057 175896 R PFAM: regulatory protein LuxR; KEGG: pfl:PFL_3468 transcriptional regulator, LuxR family; response regulator receiver protein complement(175057..175896) Parvibaculum lavamentivorans DS-1 5454177 YP_001411441.1 CDS Plav_0161 NC_009719.1 176064 177455 D PFAM: aminotransferase class-III; KEGG: cps:CPS_2054 hypothetical protein; hypothetical protein 176064..177455 Parvibaculum lavamentivorans DS-1 5454934 YP_001411442.1 CDS Plav_0162 NC_009719.1 177532 179292 D PFAM: protein of unknown function DUF1302; KEGG: azo:azo2254 conserved hypothetical secreted protein; hypothetical protein 177532..179292 Parvibaculum lavamentivorans DS-1 5454490 YP_001411443.1 CDS Plav_0163 NC_009719.1 179332 180687 D PFAM: protein of unknown function DUF1329; KEGG: reh:H16_A0834 hypothetical protein; hypothetical protein 179332..180687 Parvibaculum lavamentivorans DS-1 5454979 YP_001411444.1 CDS Plav_0164 NC_009719.1 180800 182044 D PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_4805 hypothetical protein; major facilitator superfamily transporter 180800..182044 Parvibaculum lavamentivorans DS-1 5453575 YP_001411445.1 CDS Plav_0165 NC_009719.1 182041 183489 R PFAM: Amidase; KEGG: rsp:RSP_3526 amidase; amidase complement(182041..183489) Parvibaculum lavamentivorans DS-1 5453477 YP_001411446.1 CDS Plav_0166 NC_009719.1 183572 184993 R PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr6969 aldehyde dehydrogenase; aldehyde dehydrogenase complement(183572..184993) Parvibaculum lavamentivorans DS-1 5455004 YP_001411447.1 CDS Plav_0167 NC_009719.1 185132 186412 D KEGG: nar:Saro_2604 major facilitator superfamily MFS_1; hypothetical protein 185132..186412 Parvibaculum lavamentivorans DS-1 5453410 YP_001411448.1 CDS Plav_0168 NC_009719.1 186423 187580 R PFAM: DSBA oxidoreductase; KEGG: sil:SPO1494 2-hydroxychromene-2-carboxylate isomerase, putative; DSBA oxidoreductase complement(186423..187580) Parvibaculum lavamentivorans DS-1 5453530 YP_001411449.1 CDS Plav_0169 NC_009719.1 187742 188599 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bam:Bamb_4305 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 187742..188599 Parvibaculum lavamentivorans DS-1 5453692 YP_001411450.1 CDS Plav_0170 NC_009719.1 188602 191808 R PFAM: acriflavin resistance protein; KEGG: mmr:Mmar10_2625 acriflavin resistance protein; acriflavin resistance protein complement(188602..191808) Parvibaculum lavamentivorans DS-1 5455122 YP_001411451.1 CDS Plav_0171 NC_009719.1 191805 192941 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mmr:Mmar10_2624 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(191805..192941) Parvibaculum lavamentivorans DS-1 5453495 YP_001411452.1 CDS Plav_0172 NC_009719.1 192934 193662 R PFAM: transcriptional regulator PadR family protein; KEGG: smu:SMU.1604c hypothetical protein; PadR-like family transcriptional regulator complement(192934..193662) Parvibaculum lavamentivorans DS-1 5454767 YP_001411453.1 CDS Plav_0173 NC_009719.1 193759 195579 R KEGG: nha:Nham_2663 hypothetical protein; hypothetical protein complement(193759..195579) Parvibaculum lavamentivorans DS-1 5453572 YP_001411454.1 CDS fadE NC_009719.1 195676 197946 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(195676..197946) Parvibaculum lavamentivorans DS-1 5453359 YP_001411455.1 CDS Plav_0175 NC_009719.1 197992 201132 R PFAM: acriflavin resistance protein; KEGG: saz:Sama_1905 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(197992..201132) Parvibaculum lavamentivorans DS-1 5453688 YP_001411456.1 CDS Plav_0176 NC_009719.1 201148 202209 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: csa:Csal_1440 secretion protein HlyD; RND family efflux transporter MFP subunit complement(201148..202209) Parvibaculum lavamentivorans DS-1 5453345 YP_001411457.1 CDS Plav_0177 NC_009719.1 202344 204005 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1198 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(202344..204005) Parvibaculum lavamentivorans DS-1 5455436 YP_001411458.1 CDS Plav_0178 NC_009719.1 204154 205194 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rru:Rru_A0767 ABC transporter component; ABC transporter-like protein 204154..205194 Parvibaculum lavamentivorans DS-1 5454848 YP_001411459.1 CDS Plav_0179 NC_009719.1 205288 206313 D PFAM: extracellular solute-binding protein family 1; KEGG: csa:Csal_0549 extracellular solute-binding protein, family 1; extracellular solute-binding protein 205288..206313 Parvibaculum lavamentivorans DS-1 5456636 YP_001411460.1 CDS Plav_0180 NC_009719.1 206432 207214 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gvi:gll0578 hemin ABC transporter ATP binding protein; ABC transporter-like protein complement(206432..207214) Parvibaculum lavamentivorans DS-1 5454589 YP_001411461.1 CDS Plav_0181 NC_009719.1 207211 208266 R PFAM: transport system permease protein; KEGG: jan:Jann_2135 transport system permease protein; transport system permease complement(207211..208266) Parvibaculum lavamentivorans DS-1 5455643 YP_001411462.1 CDS Plav_0182 NC_009719.1 208263 209153 R PFAM: periplasmic binding protein; KEGG: gvi:gll0580 hemin-binding periplasmic protein; periplasmic-binding protein complement(208263..209153) Parvibaculum lavamentivorans DS-1 5453632 YP_001411463.1 CDS Plav_0183 NC_009719.1 209150 210202 R PFAM: Haemin-degrading family protein; KEGG: mxa:MXAN_1318 hemin transport protein HemS; hemin-degrading family protein complement(209150..210202) Parvibaculum lavamentivorans DS-1 5456335 YP_001411464.1 CDS Plav_0184 NC_009719.1 210225 211028 R TIGRFAM: TonB family protein; KEGG: psb:Psyr_4480 TonB, C-terminal; TonB family protein complement(210225..211028) Parvibaculum lavamentivorans DS-1 5453869 YP_001411465.1 CDS Plav_0185 NC_009719.1 211043 213229 R TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ana:alr2153 outer membrane heme receptor; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor complement(211043..213229) Parvibaculum lavamentivorans DS-1 5455331 YP_001411466.1 CDS Plav_0186 NC_009719.1 213349 213591 R hypothetical protein complement(213349..213591) Parvibaculum lavamentivorans DS-1 5454301 YP_001411467.1 CDS Plav_0187 NC_009719.1 213717 214331 R PFAM: manganese and iron superoxide dismutase; KEGG: mmr:Mmar10_1895 superoxide dismutase; superoxide dismutase complement(213717..214331) Parvibaculum lavamentivorans DS-1 5456623 YP_001411468.1 CDS Plav_0188 NC_009719.1 214551 214997 D PFAM: heat shock protein Hsp20; KEGG: rpa:RPA0054 putative small heat shock protein; heat shock protein Hsp20 214551..214997 Parvibaculum lavamentivorans DS-1 5453625 YP_001411469.1 CDS Plav_0189 NC_009719.1 215062 215361 D PFAM: protein of unknown function DUF1150; KEGG: hypothetical protein; hypothetical protein 215062..215361 Parvibaculum lavamentivorans DS-1 5455071 YP_001411470.1 CDS Plav_0190 NC_009719.1 215436 215900 R TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: rru:Rru_A0009 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(215436..215900) Parvibaculum lavamentivorans DS-1 5454595 YP_001411471.1 CDS Plav_0191 NC_009719.1 216028 216609 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: hne:HNE_3290 hypothetical protein; sigma 54 modulation protein/ribosomal protein S30EA complement(216028..216609) Parvibaculum lavamentivorans DS-1 5453589 YP_001411472.1 CDS Plav_0192 NC_009719.1 216945 218492 R TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: bbt:BBta_0121 RNA polymerase sigma-54 factor; RNA polymerase sigma-54 subunit RpoN complement(216945..218492) Parvibaculum lavamentivorans DS-1 5455025 YP_001411473.1 CDS Plav_0193 NC_009719.1 218521 219324 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb3936 ABC-type (unclassified) transport system, ATPase component; ABC transporter-like protein complement(218521..219324) Parvibaculum lavamentivorans DS-1 5455756 YP_001411474.1 CDS Plav_0194 NC_009719.1 219416 220009 R TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA family protein; KEGG: rpa:RPA0048 hypothetical protein; cell envelope biogenesis YhbN complement(219416..220009) Parvibaculum lavamentivorans DS-1 5454299 YP_001411475.1 CDS Plav_0195 NC_009719.1 220006 220725 R PFAM: protein of unknown function DUF1239; KEGG: bja:blr0720 hypothetical protein; hypothetical protein complement(220006..220725) Parvibaculum lavamentivorans DS-1 5456161 YP_001411476.1 CDS Plav_0196 NC_009719.1 220820 221431 R PFAM: 3'-5' exonuclease; KEGG: rpb:RPB_0659 3'-5' exonuclease; 3'-5' exonuclease complement(220820..221431) Parvibaculum lavamentivorans DS-1 5454909 YP_001411477.1 CDS Plav_0197 NC_009719.1 221783 222748 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: rpe:RPE_0505 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 221783..222748 Parvibaculum lavamentivorans DS-1 5453834 YP_001411478.1 CDS Plav_0198 NC_009719.1 222759 223172 D TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bmb:BruAb1_0216 transcriptional regulator, MerR family; MerR family transcriptional regulator 222759..223172 Parvibaculum lavamentivorans DS-1 5454508 YP_001411479.1 CDS Plav_0199 NC_009719.1 223185 223865 D PFAM: Glutathione S-transferase domain; KEGG: mag:amb3942 glutathione S-transferase; glutathione S-transferase domain-containing protein 223185..223865 Parvibaculum lavamentivorans DS-1 5454894 YP_001411480.1 CDS Plav_0200 NC_009719.1 223846 224997 D PFAM: HEAT domain containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: mlo:mlr4636 iron-sulfur cluster binding protein; hypothetical protein 223846..224997 Parvibaculum lavamentivorans DS-1 5455133 YP_001411481.1 CDS Plav_0201 NC_009719.1 224982 225737 R SMART: Tetratricopeptide domain protein; KEGG: gbe:GbCGDNIH1_0706 tetratricopeptide repeat family protein; hypothetical protein complement(224982..225737) Parvibaculum lavamentivorans DS-1 5455604 YP_001411482.1 CDS Plav_0202 NC_009719.1 225795 226670 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: rsq:Rsph17025_2793 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 225795..226670 Parvibaculum lavamentivorans DS-1 5454115 YP_001411483.1 CDS Plav_0203 NC_009719.1 226742 227140 D KEGG: rpc:RPC_3825 hypothetical protein; hypothetical protein 226742..227140 Parvibaculum lavamentivorans DS-1 5456836 YP_001411484.1 CDS Plav_0204 NC_009719.1 227205 227999 R PFAM: alpha/beta hydrolase fold; KEGG: rpb:RPB_0067 hypothetical protein; alpha/beta hydrolase fold protein complement(227205..227999) Parvibaculum lavamentivorans DS-1 5456893 YP_001411485.1 CDS Plav_0205 NC_009719.1 228094 229233 D PFAM: glycosyl transferase group 1; KEGG: hne:HNE_0425 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 228094..229233 Parvibaculum lavamentivorans DS-1 5453854 YP_001411486.1 CDS Plav_0206 NC_009719.1 229230 229589 D hypothetical protein 229230..229589 Parvibaculum lavamentivorans DS-1 5453571 YP_001411487.1 CDS Plav_0207 NC_009719.1 229721 230242 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: translation initiation factor IF-3; K02520 translation initiation factor IF-3; translation initiation factor IF-3 229721..230242 Parvibaculum lavamentivorans DS-1 5456110 YP_001411488.1 CDS Plav_0208 NC_009719.1 230295 231251 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: acr:Acry_0560 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(230295..231251) Parvibaculum lavamentivorans DS-1 5455180 YP_001411489.1 CDS Plav_0209 NC_009719.1 231520 231786 D hypothetical protein 231520..231786 Parvibaculum lavamentivorans DS-1 5456463 YP_001411490.1 CDS Plav_0210 NC_009719.1 231981 233228 D PFAM: luciferase family protein; KEGG: bja:bll7033 LuxA-like protein; luciferase family protein 231981..233228 Parvibaculum lavamentivorans DS-1 5454736 YP_001411491.1 CDS Plav_0211 NC_009719.1 233311 233748 D PFAM: regulatory protein MarR; KEGG: ade:Adeh_2919 transcriptional regulator, MarR family; MarR family transcriptional regulator 233311..233748 Parvibaculum lavamentivorans DS-1 5454271 YP_001411492.1 CDS Plav_0212 NC_009719.1 233775 234722 D PFAM: Phytanoyl-CoA dioxygenase; KEGG: rpa:RPA0441 hypothetical protein; phytanoyl-CoA dioxygenase 233775..234722 Parvibaculum lavamentivorans DS-1 5454552 YP_001411493.1 CDS Plav_0213 NC_009719.1 234779 235216 D hypothetical protein 234779..235216 Parvibaculum lavamentivorans DS-1 5453592 YP_001411494.1 CDS Plav_0214 NC_009719.1 235266 235808 D KEGG: swi:Swit_4579 hypothetical protein; hypothetical protein 235266..235808 Parvibaculum lavamentivorans DS-1 5455142 YP_001411495.1 CDS Plav_0215 NC_009719.1 235830 236357 R KEGG: bja:bll2250 hypothetical protein; hypothetical protein complement(235830..236357) Parvibaculum lavamentivorans DS-1 5456135 YP_001411496.1 CDS Plav_0216 NC_009719.1 236368 236616 R KEGG: gur:Gura_1251 hypothetical protein; hypothetical protein complement(236368..236616) Parvibaculum lavamentivorans DS-1 5455056 YP_001411497.1 CDS Plav_0217 NC_009719.1 236697 236924 R PFAM: Post-segregation antitoxin CcdA; KEGG: gur:Gura_1252 post-segregation antitoxin CcdA; post-segregation antitoxin CcdA complement(236697..236924) Parvibaculum lavamentivorans DS-1 5455608 YP_001411498.1 CDS Plav_0218 NC_009719.1 237153 237353 D PFAM: ribosomal protein L35; KEGG: ret:RHE_CH00261 50S ribosomal protein L35; 50S ribosomal protein L35 237153..237353 Parvibaculum lavamentivorans DS-1 5454255 YP_001411499.1 CDS Plav_0219 NC_009719.1 237383 237739 D TIGRFAM: ribosomal protein L20; KEGG: mes:Meso_0674 ribosomal protein L20; 50S ribosomal protein L20 237383..237739 Parvibaculum lavamentivorans DS-1 5456127 YP_001411500.1 CDS Plav_0220 NC_009719.1 237954 239039 D TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: nwi:Nwi_0066 phenylalanyl-tRNA synthetase, alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 237954..239039 Parvibaculum lavamentivorans DS-1 5453456 YP_001411501.1 CDS Plav_0221 NC_009719.1 239036 241474 D TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: mes:Meso_0677 phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta 239036..241474 Parvibaculum lavamentivorans DS-1 5454117 YP_001411502.1 CDS Plav_0222 NC_009719.1 241504 242328 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_B1741 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 241504..242328 Parvibaculum lavamentivorans DS-1 5454455 YP_001411503.1 CDS Plav_0223 NC_009719.1 242368 244206 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 242368..244206 Parvibaculum lavamentivorans DS-1 5455311 YP_001411504.1 CDS Plav_0224 NC_009719.1 244284 244580 R KEGG: rpb:RPB_4710 hypothetical protein; hypothetical protein complement(244284..244580) Parvibaculum lavamentivorans DS-1 5454511 YP_001411505.1 CDS Plav_0225 NC_009719.1 245052 245615 R PFAM: TadE family protein; KEGG: hne:HNE_3020 Flp/Fap pilin component; TadE family protein complement(245052..245615) Parvibaculum lavamentivorans DS-1 5455100 YP_001411506.1 CDS Plav_0226 NC_009719.1 245627 246178 R PFAM: TadE family protein; KEGG: mmr:Mmar10_0414 TadE family protein; TadE family protein complement(245627..246178) Parvibaculum lavamentivorans DS-1 5453412 YP_001411507.1 CDS Plav_0227 NC_009719.1 246392 247702 D PFAM: von Willebrand factor type A; KEGG: rpa:RPA3149 hypothetical protein; von Willebrand factor type A 246392..247702 Parvibaculum lavamentivorans DS-1 5455977 YP_001411508.1 CDS Plav_0228 NC_009719.1 247769 248287 R KEGG: bja:blr1444 hypothetical protein; hypothetical protein complement(247769..248287) Parvibaculum lavamentivorans DS-1 5455043 YP_001411509.1 CDS Plav_0229 NC_009719.1 248459 249211 D PFAM: cyclic nucleotide-binding; KEGG: mag:amb3736 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; cyclic nucleotide-binding protein 248459..249211 Parvibaculum lavamentivorans DS-1 5456364 YP_001411510.1 CDS Plav_0230 NC_009719.1 249631 249795 D PFAM: Flp/Fap pilin component; KEGG: bja:bsl7141 components of type IV pilus pilin subunit; Flp/Fap pilin component 249631..249795 Parvibaculum lavamentivorans DS-1 5453847 YP_001411511.1 CDS Plav_0231 NC_009719.1 249995 250558 D PFAM: peptidase A24A prepilin type IV; KEGG: rpa:RPA3676 putative type IV prepilin peptidase, cpaA; peptidase A24A prepilin type IV 249995..250558 Parvibaculum lavamentivorans DS-1 5455295 YP_001411512.1 CDS Plav_0232 NC_009719.1 250575 251327 D PFAM: SAF domain protein; KEGG: rpd:RPD_3519 Flp pilus assembly CpaB; SAF domain-containing protein 250575..251327 Parvibaculum lavamentivorans DS-1 5453818 YP_001411513.1 CDS Plav_0233 NC_009719.1 251352 252827 D PFAM: type II and III secretion system protein; transport-associated; KEGG: mmr:Mmar10_0419 type II and III secretion system protein; type II and III secretion system protein 251352..252827 Parvibaculum lavamentivorans DS-1 5456118 YP_001411514.1 CDS Plav_0234 NC_009719.1 252838 253542 D TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: ret:RHE_CH00206 pilus assembly protein; pilus biogenesis lipoprotein CpaD 252838..253542 Parvibaculum lavamentivorans DS-1 5453602 YP_001411515.1 CDS Plav_0235 NC_009719.1 253542 254855 D KEGG: mmr:Mmar10_0421 response regulator receiver protein; response regulator receiver protein 253542..254855 Parvibaculum lavamentivorans DS-1 5454512 YP_001411516.1 CDS Plav_0236 NC_009719.1 254871 256319 D PFAM: type II secretion system protein E; KEGG: rpb:RPB_1781 type II secretion system protein E; type II secretion system protein E 254871..256319 Parvibaculum lavamentivorans DS-1 5454703 YP_001411517.1 CDS Plav_0237 NC_009719.1 256340 257326 D PFAM: type II secretion system protein; KEGG: rpc:RPC_3717 type II secretion system protein; type II secretion system protein 256340..257326 Parvibaculum lavamentivorans DS-1 5456393 YP_001411518.1 CDS Plav_0238 NC_009719.1 257341 258309 D PFAM: type II secretion system protein; KEGG: mmr:Mmar10_0424 type II secretion system protein; type II secretion system protein 257341..258309 Parvibaculum lavamentivorans DS-1 5454459 YP_001411519.1 CDS Plav_0239 NC_009719.1 258408 259388 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rle:RL0221 hypothetical protein atu0215 (agr_c_369p); hypothetical protein complement(258408..259388) Parvibaculum lavamentivorans DS-1 5455084 YP_001411520.1 CDS Plav_0240 NC_009719.1 259556 260686 D TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: mag:amb4102 TRAP-type uncharacterized transport system, periplasmic component; TRAP transporter solute receptor TAXI family protein 259556..260686 Parvibaculum lavamentivorans DS-1 5455212 YP_001411521.1 CDS Plav_0241 NC_009719.1 260683 261366 R KEGG: bte:BTH_I0235 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein complement(260683..261366) Parvibaculum lavamentivorans DS-1 5453702 YP_001411522.1 CDS Plav_0242 NC_009719.1 261472 262848 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: bov:BOV_2093 cytosol aminopeptidase family protein; leucyl aminopeptidase 261472..262848 Parvibaculum lavamentivorans DS-1 5454669 YP_001411523.1 CDS Plav_0243 NC_009719.1 262935 263306 D PFAM: regulatory protein MarR; KEGG: mag:amb4246 transcriptional regulator; MarR family transcriptional regulator 262935..263306 Parvibaculum lavamentivorans DS-1 5454688 YP_001411524.1 CDS Plav_0244 NC_009719.1 263303 264172 D PFAM: NLP/P60 protein; KEGG: rpd:RPD_3528 NLP/P60; NLP/P60 protein 263303..264172 Parvibaculum lavamentivorans DS-1 5454235 YP_001411525.1 CDS Plav_0245 NC_009719.1 264173 265801 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: mes:Meso_4080 ABC transporter related; ABC transporter-like protein complement(264173..265801) Parvibaculum lavamentivorans DS-1 5454567 YP_001411526.1 CDS Plav_0246 NC_009719.1 265798 266865 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_7052 putative oligopeptide transport protein (ABC superfamily, membrane); binding-protein-dependent transport system inner membrane protein complement(265798..266865) Parvibaculum lavamentivorans DS-1 5453553 YP_001411527.1 CDS Plav_0247 NC_009719.1 266869 267978 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nwi:Nwi_0290 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(266869..267978) Parvibaculum lavamentivorans DS-1 5456157 YP_001411528.1 CDS Plav_0248 NC_009719.1 267984 269864 R PFAM: extracellular solute-binding protein family 5; KEGG: rpe:RPE_3766 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(267984..269864) Parvibaculum lavamentivorans DS-1 5454630 YP_001411529.1 CDS Plav_0249 NC_009719.1 269861 271873 R PFAM: extracellular solute-binding protein family 5; KEGG: nwi:Nwi_0288 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(269861..271873) Parvibaculum lavamentivorans DS-1 5453730 YP_001411530.1 CDS Plav_0250 NC_009719.1 272074 272736 R PFAM: cytochrome c class I; KEGG: rpd:RPD_3536 cytochrome c, class I; cytochrome c class I complement(272074..272736) Parvibaculum lavamentivorans DS-1 5453360 YP_001411531.1 CDS Plav_0251 NC_009719.1 273044 273820 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 273044..273820 Parvibaculum lavamentivorans DS-1 5455077 YP_001411532.1 CDS Plav_0252 NC_009719.1 273820 274701 D PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: bbt:BBta_7058 chorismate mutase/prephenate dehydratase; prephenate dehydratase 273820..274701 Parvibaculum lavamentivorans DS-1 5453380 YP_001411533.1 CDS Plav_0253 NC_009719.1 274841 275527 D hypothetical protein 274841..275527 Parvibaculum lavamentivorans DS-1 5456953 YP_001411534.1 CDS Plav_0254 NC_009719.1 275537 276496 R PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: MutT/NUDIX family protein; NUDIX hydrolase complement(275537..276496) Parvibaculum lavamentivorans DS-1 5454007 YP_001411535.1 CDS Plav_0255 NC_009719.1 276779 278650 D KEGG: nha:Nham_0462 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 276779..278650 Parvibaculum lavamentivorans DS-1 5455242 YP_001411536.1 CDS Plav_0256 NC_009719.1 278656 278964 D PFAM: conserved hypothetical protein; KEGG: rpb:RPB_0667 hypothetical protein; hypothetical protein 278656..278964 Parvibaculum lavamentivorans DS-1 5453915 YP_001411537.1 CDS Plav_0257 NC_009719.1 278970 279917 D KEGG: pfo:Pfl_3049 hypothetical protein; hypothetical protein 278970..279917 Parvibaculum lavamentivorans DS-1 5455359 YP_001411538.1 CDS Plav_0258 NC_009719.1 279953 280552 D TIGRFAM: recombination protein RecR; PFAM: RecR protein; TOPRIM domain protein; KEGG: mlo:mlr5510 recombination protein recR; recombination protein RecR 279953..280552 Parvibaculum lavamentivorans DS-1 5453841 YP_001411539.1 CDS Plav_0259 NC_009719.1 280559 281899 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: maq:Maqu_0255 amino acid carrier protein; amino acid carrier protein complement(280559..281899) Parvibaculum lavamentivorans DS-1 5456603 YP_001411540.1 CDS Plav_0260 NC_009719.1 282024 283124 R PFAM: protein of unknown function DUF195; KEGG: rru:Rru_A3348 protein of unknown function DUF195; hypothetical protein complement(282024..283124) Parvibaculum lavamentivorans DS-1 5455040 YP_001411541.1 CDS Plav_0261 NC_009719.1 283265 283786 D TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; KEGG: hne:HNE_0512 peptide deformylase; peptide deformylase 283265..283786 Parvibaculum lavamentivorans DS-1 5454646 YP_001411542.1 CDS Plav_0262 NC_009719.1 283783 284715 D TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: bmb:BruAb2_0974 Fmt, methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 283783..284715 Parvibaculum lavamentivorans DS-1 5453839 YP_001411543.1 CDS Plav_0263 NC_009719.1 284715 285455 D TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; KEGG: nwi:Nwi_3066 tRNA pseudouridine synthase A; tRNA pseudouridine synthase A 284715..285455 Parvibaculum lavamentivorans DS-1 5454733 YP_001411544.1 CDS Plav_0264 NC_009719.1 285462 286292 R TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; KEGG: dde:Dde_2743 glutamate racemase; glutamate racemase complement(285462..286292) Parvibaculum lavamentivorans DS-1 5453683 YP_001411545.1 CDS Plav_0265 NC_009719.1 286289 286897 R KEGG: rru:Rru_A3481 hypothetical protein; hypothetical protein complement(286289..286897) Parvibaculum lavamentivorans DS-1 5455312 YP_001411546.1 CDS Plav_0266 NC_009719.1 286894 288081 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(286894..288081) Parvibaculum lavamentivorans DS-1 5454257 YP_001411547.1 CDS Plav_0267 NC_009719.1 288126 288971 R TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: atc:AGR_C_648 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase complement(288126..288971) Parvibaculum lavamentivorans DS-1 5456245 YP_001411548.1 CDS Plav_0268 NC_009719.1 289073 290365 R PFAM: EAL domain protein; KEGG: hypothetical protein; diguanylate phosphodiesterase complement(289073..290365) Parvibaculum lavamentivorans DS-1 5454275 YP_001411549.1 CDS Plav_0269 NC_009719.1 290477 291856 R PFAM: peptidase U34 dipeptidase; KEGG: nca:Noca_0390 peptidase U34, dipeptidase; peptidase U34 dipeptidase complement(290477..291856) Parvibaculum lavamentivorans DS-1 5455614 YP_001411550.1 CDS Plav_0270 NC_009719.1 291932 292408 D PFAM: glutathione peroxidase; KEGG: rru:Rru_A1863 glutathione peroxidase; glutathione peroxidase 291932..292408 Parvibaculum lavamentivorans DS-1 5454691 YP_001411551.1 CDS Plav_0271 NC_009719.1 292405 292905 D PFAM: DinB family protein; KEGG: acr:Acry_1562 DinB family protein; DinB family protein 292405..292905 Parvibaculum lavamentivorans DS-1 5454089 YP_001411552.1 CDS Plav_0272 NC_009719.1 292958 293632 R PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: mes:Meso_1262 OmpA/MotB; OmpA/MotB domain-containing protein complement(292958..293632) Parvibaculum lavamentivorans DS-1 5454602 YP_001411553.1 CDS Plav_0273 NC_009719.1 293858 294622 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpd:RPD_3206 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 293858..294622 Parvibaculum lavamentivorans DS-1 5456553 YP_001411554.1 CDS Plav_0274 NC_009719.1 294628 295077 D PFAM: GCN5-related N-acetyltransferase; KEGG: rru:Rru_A3458 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 294628..295077 Parvibaculum lavamentivorans DS-1 5454378 YP_001411555.1 CDS Plav_0275 NC_009719.1 295124 295975 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 295124..295975 Parvibaculum lavamentivorans DS-1 5454916 YP_001411556.1 CDS Plav_0276 NC_009719.1 296086 297411 D PFAM: beta-lactamase domain protein; KEGG: reu:Reut_C6079 beta-lactamase-like; beta-lactamase domain-containing protein 296086..297411 Parvibaculum lavamentivorans DS-1 5453796 YP_001411557.1 CDS Plav_0277 NC_009719.1 297620 298234 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: csa:Csal_2087 transcriptional regulator, XRE family with cupin sensor protein; XRE family transcriptional regulator complement(297620..298234) Parvibaculum lavamentivorans DS-1 5453759 YP_001411558.1 CDS Plav_0278 NC_009719.1 298339 299667 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 298339..299667 Parvibaculum lavamentivorans DS-1 5454694 YP_001411559.1 CDS Plav_0279 NC_009719.1 299996 301777 D hypothetical protein 299996..301777 Parvibaculum lavamentivorans DS-1 5456109 YP_001411560.1 CDS Plav_0280 NC_009719.1 302132 302659 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swi:Swit_1041 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(302132..302659) Parvibaculum lavamentivorans DS-1 5453445 YP_001411561.1 CDS Plav_0281 NC_009719.1 302663 303307 R PFAM: Carboxymuconolactone decarboxylase; KEGG: hypothetical protein; carboxymuconolactone decarboxylase complement(302663..303307) Parvibaculum lavamentivorans DS-1 5456285 YP_001411562.1 CDS Plav_0282 NC_009719.1 303378 303851 D PFAM: regulatory protein MarR; KEGG: sal:Sala_1768 transcriptional regulator, MarR family; MarR family transcriptional regulator 303378..303851 Parvibaculum lavamentivorans DS-1 5453366 YP_001411563.1 CDS Plav_0283 NC_009719.1 303848 304717 D KEGG: ava:Ava_4757 putative methylisocitrate lyase; putative methylisocitrate lyase 303848..304717 Parvibaculum lavamentivorans DS-1 5453752 YP_001411564.1 CDS Plav_0284 NC_009719.1 304729 305157 D PFAM: thioesterase superfamily protein; KEGG: hne:HNE_0832 thioesterase family protein; thioesterase superfamily protein 304729..305157 Parvibaculum lavamentivorans DS-1 5453669 YP_001411565.1 CDS Plav_0285 NC_009719.1 305237 305524 D PFAM: Excinuclease ABC C subunit domain protein; KEGG: rpe:RPE_2281 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C 305237..305524 Parvibaculum lavamentivorans DS-1 5455238 YP_001411566.1 CDS Plav_0286 NC_009719.1 305607 306377 R PFAM: extracellular solute-binding protein family 3; KEGG: pau:PA14_19140 cyclohexadienyl dehydratase; prephenate dehydratase complement(305607..306377) Parvibaculum lavamentivorans DS-1 5453391 YP_001411567.1 CDS Plav_0287 NC_009719.1 306628 309525 D TIGRFAM: isoleucyl-tRNA synthetase; KEGG: pde:Pden_3612 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 306628..309525 Parvibaculum lavamentivorans DS-1 5453642 YP_001411568.1 CDS Plav_0288 NC_009719.1 309547 310101 D TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: rpb:RPB_4181 lipoprotein signal peptidase; lipoprotein signal peptidase 309547..310101 Parvibaculum lavamentivorans DS-1 5453840 YP_001411569.1 CDS Plav_0289 NC_009719.1 310149 310751 D KEGG: rru:Rru_A2968 hypothetical protein; hypothetical protein 310149..310751 Parvibaculum lavamentivorans DS-1 5454999 YP_001411570.1 CDS Plav_0290 NC_009719.1 310862 312232 D PFAM: peptidase M16 domain protein; KEGG: rru:Rru_A2972 peptidase M16-like; peptidase M16 domain-containing protein 310862..312232 Parvibaculum lavamentivorans DS-1 5455076 YP_001411571.1 CDS Plav_0291 NC_009719.1 312229 313623 D PFAM: peptidase M16 domain protein; KEGG: mag:amb0838 predicted Zn-dependent peptidase; peptidase M16 domain-containing protein 312229..313623 Parvibaculum lavamentivorans DS-1 5454309 YP_001411572.1 CDS Plav_0292 NC_009719.1 313732 315066 D PFAM: phosphoglucose isomerase (PGI); KEGG: rxy:Rxyl_2677 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 313732..315066 Parvibaculum lavamentivorans DS-1 5453832 YP_001411573.1 CDS mutL NC_009719.1 315074 316882 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 315074..316882 Parvibaculum lavamentivorans DS-1 5453660 YP_001411574.1 CDS Plav_0294 NC_009719.1 316865 317611 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nwi:Nwi_3070 pyrimidine 5-nucleotidase; pyrimidine 5'-nucleotidase complement(316865..317611) Parvibaculum lavamentivorans DS-1 5454394 YP_001411575.1 CDS Plav_0295 NC_009719.1 317700 319034 D KEGG: mag:amb3893 hypothetical protein; hypothetical protein 317700..319034 Parvibaculum lavamentivorans DS-1 5454272 YP_001411576.1 CDS Plav_0296 NC_009719.1 319031 320032 R PFAM: Peptidoglycan-binding domain 1 protein; protein of unknown function DUF1036; KEGG: bja:blr8102 hypothetical protein; hypothetical protein complement(319031..320032) Parvibaculum lavamentivorans DS-1 5454244 YP_001411577.1 CDS Plav_0297 NC_009719.1 320114 321028 R TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: mlo:mlr4826 acetylglutamate kinase; acetylglutamate kinase complement(320114..321028) Parvibaculum lavamentivorans DS-1 5455607 YP_001411578.1 CDS engB NC_009719.1 321069 321776 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(321069..321776) Parvibaculum lavamentivorans DS-1 5453385 YP_001411579.1 CDS Plav_0299 NC_009719.1 321781 323610 R PFAM: 60 kDa inner membrane insertion protein; KEGG: rpa:RPA0632 60 kDa inner membrane protein; 60 kDa inner membrane insertion protein complement(321781..323610) Parvibaculum lavamentivorans DS-1 5455074 YP_001411580.1 CDS Plav_0300 NC_009719.1 323603 324007 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: ribonuclease P protein component; ribonuclease P protein component complement(323603..324007) Parvibaculum lavamentivorans DS-1 5454611 YP_001411581.1 CDS Plav_0301 NC_009719.1 324058 324192 R PFAM: ribosomal protein L34; KEGG: acr:Acry_2138 ribosomal protein L34; 50S ribosomal protein L34 complement(324058..324192) Parvibaculum lavamentivorans DS-1 5456248 YP_001411582.1 CDS Plav_0302 NC_009719.1 324418 325347 D PFAM: protein of unknown function DUF547; KEGG: lpp:lpp2805 hypothetical protein; hypothetical protein 324418..325347 Parvibaculum lavamentivorans DS-1 5454576 YP_001411583.1 CDS Plav_0303 NC_009719.1 325344 326084 D PFAM: SNARE associated Golgi protein; KEGG: lpc:LPC_0984 mercuric reductase; hypothetical protein 325344..326084 Parvibaculum lavamentivorans DS-1 5454331 YP_001411584.1 CDS Plav_0304 NC_009719.1 326127 327551 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: jan:Jann_0645 pyridine nucleotide-disulphide oxidoreductase dimerisation protein; pyridine nucleotide-disulfide oxidoreductase dimerisation region 326127..327551 Parvibaculum lavamentivorans DS-1 5454871 YP_001411585.1 CDS Plav_0305 NC_009719.1 327592 329106 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpc:RPC_0820 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 327592..329106 Parvibaculum lavamentivorans DS-1 5456888 YP_001411586.1 CDS Plav_0306 NC_009719.1 329141 329902 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: bxe:Bxe_A1241 trehalose-phosphatase; HAD family hydrolase 329141..329902 Parvibaculum lavamentivorans DS-1 5454078 YP_001411587.1 CDS Plav_0307 NC_009719.1 329931 331742 D PFAM: glycoside hydrolase 15-related; KEGG: mes:Meso_1528 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 329931..331742 Parvibaculum lavamentivorans DS-1 5454040 YP_001411588.1 CDS Plav_0308 NC_009719.1 331739 333136 D PFAM: glycosyl transferase family 20; KEGG: bam:Bamb_3873 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Alpha,alpha-trehalose-phosphate synthase 331739..333136 Parvibaculum lavamentivorans DS-1 5455021 YP_001411589.1 CDS Plav_0309 NC_009719.1 333133 334137 D TIGRFAM: glucokinase; PFAM: Glucokinase; KEGG: nwi:Nwi_1025 glucokinase; glucokinase 333133..334137 Parvibaculum lavamentivorans DS-1 5454840 YP_001411590.1 CDS Plav_0310 NC_009719.1 334134 335867 R TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: vpa:VP3011 gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(334134..335867) Parvibaculum lavamentivorans DS-1 5454159 YP_001411591.1 CDS Plav_0311 NC_009719.1 336036 337073 D PFAM: peptidase S58 DmpA; KEGG: mmr:Mmar10_0463 peptidase S58, DmpA; peptidase S58 DmpA 336036..337073 Parvibaculum lavamentivorans DS-1 5456519 YP_001411592.1 CDS Plav_0312 NC_009719.1 337401 337976 R PFAM: filamentation induced by cAMP protein Fic; KEGG: rpe:RPE_0699 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(337401..337976) Parvibaculum lavamentivorans DS-1 5453480 YP_001411593.1 CDS Plav_0313 NC_009719.1 337988 338191 R KEGG: rpe:RPE_0700 hypothetical protein; hypothetical protein complement(337988..338191) Parvibaculum lavamentivorans DS-1 5456546 YP_001411594.1 CDS Plav_0314 NC_009719.1 338234 339511 R KEGG: hch:HCH_06379 hypothetical protein; hypothetical protein complement(338234..339511) Parvibaculum lavamentivorans DS-1 5453500 YP_001411595.1 CDS Plav_0315 NC_009719.1 339688 341598 D PFAM: ParB domain protein nuclease; KEGG: swi:Swit_3672 ParB domain protein nuclease; nuclease 339688..341598 Parvibaculum lavamentivorans DS-1 5456828 YP_001411596.1 CDS Plav_0316 NC_009719.1 341772 342257 D hypothetical protein 341772..342257 Parvibaculum lavamentivorans DS-1 5453529 YP_001411597.1 CDS Plav_0317 NC_009719.1 342301 342789 R KEGG: eba:ebA2442 hypothetical protein; hypothetical protein complement(342301..342789) Parvibaculum lavamentivorans DS-1 5454937 YP_001411598.1 CDS Plav_0318 NC_009719.1 342782 344524 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: gur:Gura_2212 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein complement(342782..344524) Parvibaculum lavamentivorans DS-1 5453740 YP_001411599.1 CDS Plav_0319 NC_009719.1 344540 345730 R KEGG: rme:Rmet_3041 hypothetical protein; hypothetical protein complement(344540..345730) Parvibaculum lavamentivorans DS-1 5454621 YP_001411600.1 CDS Plav_0320 NC_009719.1 346290 347885 R PFAM: Resolvase domain; Recombinase; KEGG: nwi:Nwi_1250 resolvase; resolvase domain-containing protein complement(346290..347885) Parvibaculum lavamentivorans DS-1 5453443 YP_001411601.1 CDS Plav_0321 NC_009719.1 348187 349521 D KEGG: hch:HCH_06391 hypothetical protein; hypothetical protein 348187..349521 Parvibaculum lavamentivorans DS-1 5454712 YP_001411602.1 CDS Plav_0322 NC_009719.1 349675 350025 D PFAM: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 349675..350025 Parvibaculum lavamentivorans DS-1 5456934 YP_001411603.1 CDS Plav_0323 NC_009719.1 350022 350552 D hypothetical protein 350022..350552 Parvibaculum lavamentivorans DS-1 5454411 YP_001411604.1 CDS Plav_0324 NC_009719.1 350632 350967 D KEGG: mag:amb3705 hypothetical protein; hypothetical protein 350632..350967 Parvibaculum lavamentivorans DS-1 5455403 YP_001411605.1 CDS Plav_0325 NC_009719.1 351016 351453 R hypothetical protein complement(351016..351453) Parvibaculum lavamentivorans DS-1 5455753 YP_001411606.1 CDS Plav_0326 NC_009719.1 351500 351760 R hypothetical protein complement(351500..351760) Parvibaculum lavamentivorans DS-1 5455665 YP_001411607.1 CDS Plav_0327 NC_009719.1 352118 353287 D PFAM: Phosphoglycerate mutase; KEGG: gbe:GbCGDNIH1_2315 phosphoglycerate mutase family protein; phosphoglycerate mutase 352118..353287 Parvibaculum lavamentivorans DS-1 5456991 YP_001411608.1 CDS Plav_0328 NC_009719.1 353321 354028 D KEGG: sco:SCO2312 secreted protein; hypothetical protein 353321..354028 Parvibaculum lavamentivorans DS-1 5456033 YP_001411609.1 CDS Plav_0329 NC_009719.1 354044 354661 D KEGG: pai:PAE3049 phosphoribosyl transferase; phosphoribosyltransferase-like protein 354044..354661 Parvibaculum lavamentivorans DS-1 5455865 YP_001411610.1 CDS Plav_0330 NC_009719.1 354671 355252 R PFAM: integrase family protein; KEGG: jan:Jann_1536 phage integrase; integrase family protein complement(354671..355252) Parvibaculum lavamentivorans DS-1 5455993 YP_001411611.1 CDS Plav_0331 NC_009719.1 355434 355778 R KEGG: rpe:RPE_1559 hypothetical protein; hypothetical protein complement(355434..355778) Parvibaculum lavamentivorans DS-1 5453783 YP_001411612.1 CDS Plav_0332 NC_009719.1 355784 356458 R PFAM: FRG domain protein; KEGG: rpe:RPE_1558 hypothetical protein; FRG domain-containing protein complement(355784..356458) Parvibaculum lavamentivorans DS-1 5455944 YP_001411613.1 CDS Plav_0333 NC_009719.1 356581 357744 R KEGG: mlo:mll6424 hypothetical protein; hypothetical protein complement(356581..357744) Parvibaculum lavamentivorans DS-1 5456076 YP_001411614.1 CDS Plav_0334 NC_009719.1 357747 358091 R hypothetical protein complement(357747..358091) Parvibaculum lavamentivorans DS-1 5455616 YP_001411615.1 CDS Plav_0335 NC_009719.1 358136 358729 R PFAM: ExsB family protein; KEGG: mlo:mll6423 hypothetical protein; ExsB family protein complement(358136..358729) Parvibaculum lavamentivorans DS-1 5455131 YP_001411616.1 CDS Plav_0336 NC_009719.1 358726 359910 R PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: mlo:mll6424 hypothetical protein; nucleoside 2-deoxyribosyltransferase complement(358726..359910) Parvibaculum lavamentivorans DS-1 5455863 YP_001411617.1 CDS Plav_0337 NC_009719.1 359907 360248 R hypothetical protein complement(359907..360248) Parvibaculum lavamentivorans DS-1 5455587 YP_001411618.1 CDS Plav_0338 NC_009719.1 360319 361041 R KEGG: mlo:mll6426 hypothetical protein; hypothetical protein complement(360319..361041) Parvibaculum lavamentivorans DS-1 5455755 YP_001411619.1 CDS Plav_0339 NC_009719.1 361056 361364 D XRE family transcriptional regulator 361056..361364 Parvibaculum lavamentivorans DS-1 5455746 YP_001411620.1 CDS Plav_0340 NC_009719.1 361502 361729 D PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 361502..361729 Parvibaculum lavamentivorans DS-1 5455685 YP_001411621.1 CDS Plav_0341 NC_009719.1 362064 362444 D KEGG: sil:SPO1229 hypothetical protein; hypothetical protein 362064..362444 Parvibaculum lavamentivorans DS-1 5455679 YP_001411622.1 CDS Plav_0342 NC_009719.1 362448 364676 D KEGG: sil:SPO1230 hypothetical protein; hypothetical protein 362448..364676 Parvibaculum lavamentivorans DS-1 5454783 YP_001411623.1 CDS Plav_0343 NC_009719.1 364876 365796 D KEGG: sil:SPO1231 hypothetical protein; hypothetical protein 364876..365796 Parvibaculum lavamentivorans DS-1 5454520 YP_001411624.1 CDS Plav_0344 NC_009719.1 365985 366428 R KEGG: swi:Swit_5040 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase complement(365985..366428) Parvibaculum lavamentivorans DS-1 5455506 YP_001411625.1 CDS Plav_0345 NC_009719.1 366725 367147 D hypothetical protein 366725..367147 Parvibaculum lavamentivorans DS-1 5453803 YP_001411626.1 CDS Plav_0346 NC_009719.1 367212 369011 D TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: maq:Maqu_0126 copper-resistance protein, CopA family; CopA family copper resistance protein 367212..369011 Parvibaculum lavamentivorans DS-1 5455555 YP_001411627.1 CDS Plav_0347 NC_009719.1 369011 369721 D PFAM: copper resistance B precursor; KEGG: ppf:Pput_0013 copper resistance B precursor; copper resistance B 369011..369721 Parvibaculum lavamentivorans DS-1 5453886 YP_001411628.1 CDS Plav_0348 NC_009719.1 369757 370326 D PFAM: blue (type 1) copper domain protein; KEGG: pfo:Pfl_3854 uncharacterized copper-binding protein; blue (type1) copper domain-containing protein 369757..370326 Parvibaculum lavamentivorans DS-1 5455389 YP_001411629.1 CDS Plav_0349 NC_009719.1 370488 370769 D KEGG: mmr:Mmar10_0207 hypothetical protein; hypothetical protein 370488..370769 Parvibaculum lavamentivorans DS-1 5455009 YP_001411630.1 CDS Plav_0350 NC_009719.1 370772 372868 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mes:Meso_3876 heavy metal translocating P-type ATPase; copper-translocating P-type ATPase 370772..372868 Parvibaculum lavamentivorans DS-1 5454431 YP_001411631.1 CDS Plav_0351 NC_009719.1 372865 374283 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mes:Meso_3879 beta-lactamase-like; beta-lactamase domain-containing protein 372865..374283 Parvibaculum lavamentivorans DS-1 5455318 YP_001411632.1 CDS Plav_0352 NC_009719.1 374295 374750 D KEGG: rfr:Rfer_0425 hypothetical protein; hypothetical protein 374295..374750 Parvibaculum lavamentivorans DS-1 5457029 YP_001411633.1 CDS Plav_0353 NC_009719.1 375029 375433 D hypothetical protein 375029..375433 Parvibaculum lavamentivorans DS-1 5455426 YP_001411634.1 CDS Plav_0354 NC_009719.1 375494 377050 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: psa:PST_3362 heavy metal RND efflux membrane fusion protein, CzcB family; RND family efflux transporter MFP subunit 375494..377050 Parvibaculum lavamentivorans DS-1 5456556 YP_001411635.1 CDS Plav_0355 NC_009719.1 377047 380181 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_4404 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 377047..380181 Parvibaculum lavamentivorans DS-1 5453706 YP_001411636.1 CDS Plav_0356 NC_009719.1 380279 380623 R PFAM: Rhodanese domain protein; KEGG: bmn:BMA10247_A0425 transcriptional regulator, ArsR family; rhodanese domain-containing protein complement(380279..380623) Parvibaculum lavamentivorans DS-1 5456443 YP_001411637.1 CDS Plav_0357 NC_009719.1 380705 381874 R PFAM: integrase family protein; KEGG: sil:SPO1219 site-specific recombinase, phage integrase family; integrase family protein complement(380705..381874) Parvibaculum lavamentivorans DS-1 5453656 YP_001411638.1 CDS Plav_0358 NC_009719.1 382262 384070 D TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sme:SMa0113 putative sensory transduction histidine kinase; signal transduction histidine kinase 382262..384070 Parvibaculum lavamentivorans DS-1 5456368 YP_001411639.1 CDS Plav_0359 NC_009719.1 384241 385491 D TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: sal:Sala_0110 acetyl-CoA C-acyltransferase; acetyl-CoA acetyltransferase 384241..385491 Parvibaculum lavamentivorans DS-1 5454656 YP_001411640.1 CDS Plav_0360 NC_009719.1 385504 387165 R PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein; Steryl-sulfatase complement(385504..387165) Parvibaculum lavamentivorans DS-1 5454189 YP_001411641.1 CDS Plav_0361 NC_009719.1 387238 387816 R KEGG: sal:Sala_0301 putative transcriptional regulator, TetR family; TetR family transcriptional regulator complement(387238..387816) Parvibaculum lavamentivorans DS-1 5453462 YP_001411642.1 CDS Plav_0362 NC_009719.1 387816 388283 R KEGG: hne:HNE_1664 hypothetical protein; hypothetical protein complement(387816..388283) Parvibaculum lavamentivorans DS-1 5456875 YP_001411643.1 CDS Plav_0363 NC_009719.1 388544 389521 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: bja:blr2606 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 388544..389521 Parvibaculum lavamentivorans DS-1 5454145 YP_001411644.1 CDS Plav_0364 NC_009719.1 389530 389742 D hypothetical protein 389530..389742 Parvibaculum lavamentivorans DS-1 5456912 YP_001411645.1 CDS Plav_0365 NC_009719.1 389831 390646 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A3284 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 389831..390646 Parvibaculum lavamentivorans DS-1 5453856 YP_001411646.1 CDS Plav_0366 NC_009719.1 390650 392104 R PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bur:Bcep18194_C7122 flavin-containing monooxygenase FMO; FAD dependent oxidoreductase complement(390650..392104) Parvibaculum lavamentivorans DS-1 5453604 YP_001411647.1 CDS Plav_0367 NC_009719.1 392122 393210 R PFAM: aminoglycoside phosphotransferase; protein of unknown function DUF227; KEGG: hne:HNE_1389 hypothetical protein; aminoglycoside phosphotransferase complement(392122..393210) Parvibaculum lavamentivorans DS-1 5455458 YP_001411648.1 CDS Plav_0368 NC_009719.1 393231 393602 R KEGG: hne:HNE_0989 hypothetical protein; hypothetical protein complement(393231..393602) Parvibaculum lavamentivorans DS-1 5455166 YP_001411649.1 CDS Plav_0369 NC_009719.1 393599 394855 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: hne:HNE_0988 monooxygenase; FAD-binding monooxygenase complement(393599..394855) Parvibaculum lavamentivorans DS-1 5456989 YP_001411650.1 CDS Plav_0370 NC_009719.1 395100 396137 D PFAM: aminoglycoside phosphotransferase; KEGG: hne:HNE_2794 phosphotransferase enzyme family protein; aminoglycoside phosphotransferase 395100..396137 Parvibaculum lavamentivorans DS-1 5454085 YP_001411651.1 CDS Plav_0371 NC_009719.1 396162 396899 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr1495 oxidoreductase; short-chain dehydrogenase/reductase SDR 396162..396899 Parvibaculum lavamentivorans DS-1 5455536 YP_001411652.1 CDS Plav_0372 NC_009719.1 396914 397960 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hne:HNE_2796 alcohol dehydrogenase, class III; alcohol dehydrogenase 396914..397960 Parvibaculum lavamentivorans DS-1 5455147 YP_001411653.1 CDS Plav_0373 NC_009719.1 397968 398720 R TIGRFAM: TonB family protein; KEGG: rpe:RPE_0962 TonB family protein; TonB family protein complement(397968..398720) Parvibaculum lavamentivorans DS-1 5454292 YP_001411654.1 CDS Plav_0374 NC_009719.1 398717 399142 R TIGRFAM: TonB system transport protein ExbD type-1; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpd:RPD_2358 biopolymer transport protein ExbD/TolR; TonB system transport protein ExbD type-1 complement(398717..399142) Parvibaculum lavamentivorans DS-1 5453960 YP_001411655.1 CDS Plav_0375 NC_009719.1 399146 400075 R TIGRFAM: TonB-system energizer ExbB type-1; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN5451 solvent/drug/ferric siderophore transport protein ExbB; TonB-system energizer ExbB type-1 complement(399146..400075) Parvibaculum lavamentivorans DS-1 5456121 YP_001411656.1 CDS Plav_0376 NC_009719.1 400410 402719 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pmy:Pmen_0802 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 400410..402719 Parvibaculum lavamentivorans DS-1 5455248 YP_001411657.1 CDS Plav_0377 NC_009719.1 402853 403533 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pmy:Pmen_0803 2OG-Fe(II) oxygenase; putative hydroxylase 402853..403533 Parvibaculum lavamentivorans DS-1 5456955 YP_001411658.1 CDS Plav_0378 NC_009719.1 403530 404645 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pmy:Pmen_0804 FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 403530..404645 Parvibaculum lavamentivorans DS-1 5454403 YP_001411659.1 CDS Plav_0379 NC_009719.1 404728 405246 D PFAM: protein of unknown function DUF1457; hypothetical protein 404728..405246 Parvibaculum lavamentivorans DS-1 5454344 YP_001411660.1 CDS Plav_0380 NC_009719.1 405347 407242 D PFAM: beta-lactamase domain protein; KEGG: reh:H16_A3671 alkyl sulfatase; beta-lactamase domain-containing protein 405347..407242 Parvibaculum lavamentivorans DS-1 5453770 YP_001411661.1 CDS Plav_0381 NC_009719.1 407261 408283 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_5531 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 407261..408283 Parvibaculum lavamentivorans DS-1 5455027 YP_001411662.1 CDS Plav_0382 NC_009719.1 408407 408772 D hypothetical protein 408407..408772 Parvibaculum lavamentivorans DS-1 5454056 YP_001411663.1 CDS Plav_0383 NC_009719.1 408779 412966 R PFAM: protein of unknown function DUF490; KEGG: rru:Rru_A2098 protein of unknown function DUF490; hypothetical protein complement(408779..412966) Parvibaculum lavamentivorans DS-1 5454513 YP_001411664.1 CDS Plav_0384 NC_009719.1 412966 414813 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rru:Rru_A2099 surface antigen; surface antigen (D15) complement(412966..414813) Parvibaculum lavamentivorans DS-1 5453815 YP_001411665.1 CDS Plav_0385 NC_009719.1 415033 417222 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_3434 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 415033..417222 Parvibaculum lavamentivorans DS-1 5456051 YP_001411666.1 CDS Plav_0386 NC_009719.1 417292 418560 D PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: shw:Sputw3181_2197 protein of unknown function DUF955; helix-turn-helix domain-containing protein 417292..418560 Parvibaculum lavamentivorans DS-1 5453978 YP_001411667.1 CDS Plav_0387 NC_009719.1 418572 419684 D KEGG: reh:H16_A0011 hypothetical protein; hypothetical protein 418572..419684 Parvibaculum lavamentivorans DS-1 5456844 YP_001411668.1 CDS Plav_0388 NC_009719.1 419684 420433 D PFAM: regulatory protein TetR; KEGG: reu:Reut_B3897 regulatory protein, TetR; TetR family transcriptional regulator 419684..420433 Parvibaculum lavamentivorans DS-1 5454826 YP_001411669.1 CDS Plav_0389 NC_009719.1 420808 421791 R PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_1337 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(420808..421791) Parvibaculum lavamentivorans DS-1 5456376 YP_001411670.1 CDS Plav_0390 NC_009719.1 421961 423025 R PFAM: Integral membrane protein TerC; KEGG: rpd:RPD_0056 integral membrane protein TerC; integral membrane protein TerC complement(421961..423025) Parvibaculum lavamentivorans DS-1 5454047 YP_001411671.1 CDS Plav_0391 NC_009719.1 423479 424318 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pmy:Pmen_1266 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(423479..424318) Parvibaculum lavamentivorans DS-1 5455081 YP_001411672.1 CDS Plav_0392 NC_009719.1 424479 425696 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mkm:Mkms_3808 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 424479..425696 Parvibaculum lavamentivorans DS-1 5453976 YP_001411673.1 CDS Plav_0393 NC_009719.1 425708 427045 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bbt:BBta_0757 two component sensor histidine kinase; multi-sensor signal transduction histidine kinase 425708..427045 Parvibaculum lavamentivorans DS-1 5455328 YP_001411674.1 CDS Plav_0394 NC_009719.1 427196 428275 D KEGG: rru:Rru_A0598 phosphate ABC transporter, periplasmic binding protein; phosphate ABC transporter substrate-binding protein 427196..428275 Parvibaculum lavamentivorans DS-1 5454558 YP_001411675.1 CDS Plav_0395 NC_009719.1 428351 429730 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1072 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 428351..429730 Parvibaculum lavamentivorans DS-1 5455406 YP_001411676.1 CDS Plav_0396 NC_009719.1 429723 431015 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A0600 phosphate transport system permease protein 2; phosphate ABC transporter permease 429723..431015 Parvibaculum lavamentivorans DS-1 5453507 YP_001411677.1 CDS Plav_0397 NC_009719.1 431017 431871 D TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_3118 phosphate ABC transporter, ATPase subunit; phosphate ABC transporter ATPase 431017..431871 Parvibaculum lavamentivorans DS-1 5454823 YP_001411678.1 CDS Plav_0398 NC_009719.1 431916 432632 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: phoU; phosphate transport regulon regulator PhoU; K02039 phosphate transport system protein; phosphate uptake regulator PhoU 431916..432632 Parvibaculum lavamentivorans DS-1 5454170 YP_001411679.1 CDS Plav_0399 NC_009719.1 432650 433468 D TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mmr:Mmar10_0483 two component transcriptional regulator, winged helix family; two component transcriptional regulator 432650..433468 Parvibaculum lavamentivorans DS-1 5454241 YP_001411680.1 CDS Plav_0400 NC_009719.1 433586 434101 R PFAM: GcrA cell cycle regulator; KEGG: mmr:Mmar10_0485 GcrA cell cycle regulator; GcrA cell cycle regulator complement(433586..434101) Parvibaculum lavamentivorans DS-1 5454211 YP_001411681.1 CDS Plav_0401 NC_009719.1 434362 435270 D PFAM: ABC-2 type transporter; KEGG: mmr:Mmar10_0486 ABC-2 type transporter; ABC transporter 434362..435270 Parvibaculum lavamentivorans DS-1 5456169 YP_001411682.1 CDS Plav_0402 NC_009719.1 435479 436819 D TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: ret:RHE_CH00516 diaminobutyrate--pyruvate aminotransferase protein; acetylornithine and succinylornithine aminotransferase 435479..436819 Parvibaculum lavamentivorans DS-1 5453522 YP_001411683.1 CDS Plav_0403 NC_009719.1 436816 437757 D TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: rpe:RPE_4883 ornithine carbamoyltransferase; ornithine carbamoyltransferase 436816..437757 Parvibaculum lavamentivorans DS-1 5453727 YP_001411684.1 CDS Plav_0404 NC_009719.1 437745 438740 D PFAM: Hsp33 protein; KEGG: bra:BRADO6776 heat shock protein HSP33; Hsp33 protein 437745..438740 Parvibaculum lavamentivorans DS-1 5454773 YP_001411685.1 CDS Plav_0405 NC_009719.1 438737 439360 D KEGG: mag:amb0319 hypothetical protein; hypothetical protein 438737..439360 Parvibaculum lavamentivorans DS-1 5453599 YP_001411686.1 CDS Plav_0406 NC_009719.1 439463 439924 D PFAM: BLUF domain protein; KEGG: hne:HNE_0975 BLUF domain protein; BLUF domain-containing protein 439463..439924 Parvibaculum lavamentivorans DS-1 5453354 YP_001411687.1 CDS Plav_0407 NC_009719.1 439907 441085 R TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mag:amb2375 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase and related deacylase; acetylornithine deacetylase ArgE complement(439907..441085) Parvibaculum lavamentivorans DS-1 5455873 YP_001411688.1 CDS apaG NC_009719.1 441196 441588 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(441196..441588) Parvibaculum lavamentivorans DS-1 5453512 YP_001411689.1 CDS Plav_0409 NC_009719.1 441782 442972 R TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rpd:RPD_0903 O-succinylhomoserine sulfhydrylase; O-succinylhomoserine sulfhydrylase complement(441782..442972) Parvibaculum lavamentivorans DS-1 5455700 YP_001411690.1 CDS Plav_0410 NC_009719.1 443231 444388 D Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase 443231..444388 Parvibaculum lavamentivorans DS-1 5454046 YP_001411691.1 CDS Plav_0411 NC_009719.1 444395 444772 D PFAM: LrgA family protein; KEGG: csa:Csal_1793 LrgA; LrgA family protein 444395..444772 Parvibaculum lavamentivorans DS-1 5454004 YP_001411692.1 CDS Plav_0412 NC_009719.1 444769 445494 D PFAM: LrgB family protein; KEGG: dar:Daro_3106 LrgB-like protein; LrgB family protein 444769..445494 Parvibaculum lavamentivorans DS-1 5455072 YP_001411693.1 CDS Plav_0413 NC_009719.1 445579 445995 R hypothetical protein complement(445579..445995) Parvibaculum lavamentivorans DS-1 5454246 YP_001411694.1 CDS Plav_0414 NC_009719.1 446153 447145 R PFAM: Radical SAM domain protein; KEGG: rde:RD1_2724 radical SAM domain protein; radical SAM domain-containing protein complement(446153..447145) Parvibaculum lavamentivorans DS-1 5454843 YP_001411695.1 CDS Plav_0415 NC_009719.1 447199 448218 D KEGG: tde:TDE1337 hypothetical protein; hypothetical protein 447199..448218 Parvibaculum lavamentivorans DS-1 5456107 YP_001411696.1 CDS Plav_0416 NC_009719.1 448510 449373 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mes:Meso_1525 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(448510..449373) Parvibaculum lavamentivorans DS-1 5456164 YP_001411697.1 CDS Plav_0417 NC_009719.1 449401 450018 R PFAM: NADPH-dependent FMN reductase; KEGG: ret:RHE_PE00021 hypothetical protein; NADPH-dependent FMN reductase complement(449401..450018) Parvibaculum lavamentivorans DS-1 5455375 YP_001411698.1 CDS Plav_0418 NC_009719.1 450156 450341 R KEGG: rsh:Rsph17029_2606 hypothetical protein; hypothetical protein complement(450156..450341) Parvibaculum lavamentivorans DS-1 5453521 YP_001411699.1 CDS Plav_0419 NC_009719.1 450492 451853 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: nha:Nham_1581 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 450492..451853 Parvibaculum lavamentivorans DS-1 5453981 YP_001411700.1 CDS Plav_0420 NC_009719.1 451873 452595 R KEGG: hne:HNE_1502 hypothetical protein; hypothetical protein complement(451873..452595) Parvibaculum lavamentivorans DS-1 5454333 YP_001411701.1 CDS Plav_0421 NC_009719.1 452686 454671 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: psa:PST_0499 probable choline transporter; choline/carnitine/betaine transporter 452686..454671 Parvibaculum lavamentivorans DS-1 5454269 YP_001411702.1 CDS Plav_0422 NC_009719.1 454680 456260 D catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 454680..456260 Parvibaculum lavamentivorans DS-1 5453822 YP_001411703.1 CDS Plav_0423 NC_009719.1 456270 456797 R PFAM: response regulator receiver; KEGG: mmr:Mmar10_0951 response regulator receiver protein; response regulator receiver protein complement(456270..456797) Parvibaculum lavamentivorans DS-1 5454881 YP_001411704.1 CDS Plav_0424 NC_009719.1 456871 458829 R PFAM: glycosyl transferase family 2; General secretory system II protein E domain protein; KEGG: xcb:XC_3555 hypothetical protein; glycosyl transferase family protein complement(456871..458829) Parvibaculum lavamentivorans DS-1 5453509 YP_001411705.1 CDS Plav_0425 NC_009719.1 459054 460013 D PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc00140 putative amino-acid binding periplasmic protein; extracellular solute-binding protein 459054..460013 Parvibaculum lavamentivorans DS-1 5455343 YP_001411706.1 CDS Plav_0426 NC_009719.1 460007 460564 R PFAM: Phosphoglycerate mutase; KEGG: swi:Swit_3559 putative phosphohistidine phosphatase, SixA; putative phosphohistidine phosphatase SixA complement(460007..460564) Parvibaculum lavamentivorans DS-1 5454942 YP_001411707.1 CDS Plav_0427 NC_009719.1 460561 461448 R KEGG: aeh:Mlg_0287 sterol desaturase-like protein; sterol desaturase-like protein complement(460561..461448) Parvibaculum lavamentivorans DS-1 5455029 YP_001411708.1 CDS Plav_0428 NC_009719.1 461587 462357 D KEGG: stm:STM0050 putative nitrite reductase; hypothetical protein 461587..462357 Parvibaculum lavamentivorans DS-1 5454988 YP_001411709.1 CDS Plav_0429 NC_009719.1 462362 462772 R KEGG: ret:RHE_CH00534 hypothetical protein; hypothetical protein complement(462362..462772) Parvibaculum lavamentivorans DS-1 5456897 YP_001411710.1 CDS Plav_0430 NC_009719.1 462803 465715 R SMART: helicase c2; KEGG: mag:amb3608 Rad3-related DNA helicase; helicase c2 complement(462803..465715) Parvibaculum lavamentivorans DS-1 5453894 YP_001411711.1 CDS Plav_0431 NC_009719.1 465755 467749 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcv:XCV0528 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase complement(465755..467749) Parvibaculum lavamentivorans DS-1 5453693 YP_001411712.1 CDS lysK NC_009719.1 467806 469425 D class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 467806..469425 Parvibaculum lavamentivorans DS-1 5453742 YP_001411713.1 CDS Plav_0433 NC_009719.1 469500 471011 D KEGG: ppr:PBPRA1525 hypothetical protein; hypothetical protein 469500..471011 Parvibaculum lavamentivorans DS-1 5454424 YP_001411714.1 CDS Plav_0434 NC_009719.1 471008 471832 D KEGG: mmr:Mmar10_0515 hypothetical protein; hypothetical protein 471008..471832 Parvibaculum lavamentivorans DS-1 5453893 YP_001411715.1 CDS Plav_0435 NC_009719.1 471835 472479 R PFAM: peptidase S24 S26A and S26B; KEGG: rpc:RPC_0757 putative phage repressor; putative phage repressor complement(471835..472479) Parvibaculum lavamentivorans DS-1 5453793 YP_001411716.1 CDS Plav_0436 NC_009719.1 472620 472976 D PFAM: protein of unknown function DUF952; KEGG: bmb:BruAb1_0338 hypothetical protein; hypothetical protein 472620..472976 Parvibaculum lavamentivorans DS-1 5455739 YP_001411717.1 CDS Plav_0437 NC_009719.1 472977 474023 D PFAM: dihydroorotate dehydrogenase; KEGG: mag:amb3890 dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 472977..474023 Parvibaculum lavamentivorans DS-1 5454449 YP_001411718.1 CDS Plav_0438 NC_009719.1 474032 474382 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: noc:Noc_0186 arsenate reductase; arsenate reductase 474032..474382 Parvibaculum lavamentivorans DS-1 5455907 YP_001411719.1 CDS Plav_0439 NC_009719.1 474386 475702 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rpc:RPC_0753 MATE efflux family protein; MATE efflux family protein complement(474386..475702) Parvibaculum lavamentivorans DS-1 5457040 YP_001411720.1 CDS Plav_0440 NC_009719.1 475699 476136 R PFAM: thioesterase superfamily protein; KEGG: rsp:RSP_2203 hypothetical protein; thioesterase superfamily protein complement(475699..476136) Parvibaculum lavamentivorans DS-1 5456680 YP_001411721.1 CDS Plav_0441 NC_009719.1 476133 476834 R PFAM: thioesterase superfamily protein; KEGG: rpb:RPB_1029 phenylacetic acid degradation-related protein; thioesterase superfamily protein complement(476133..476834) Parvibaculum lavamentivorans DS-1 5453763 YP_001411722.1 CDS Plav_0442 NC_009719.1 476882 477349 D PFAM: protein of unknown function DUF1457; hypothetical protein 476882..477349 Parvibaculum lavamentivorans DS-1 5456493 YP_001411723.1 CDS Plav_0443 NC_009719.1 477432 478859 D PFAM: flavin-containing monooxygenase FMO; KEGG: monooxygenase, flavin-binding family; K07222 putative flavoprotein involved in K+ transport; flavin-containing monooxygenase 477432..478859 Parvibaculum lavamentivorans DS-1 5455598 YP_001411724.1 CDS Plav_0444 NC_009719.1 479000 479662 D PFAM: regulatory protein TetR; KEGG: transcriptional regulator, TetR family; TetR family transcriptional regulator 479000..479662 Parvibaculum lavamentivorans DS-1 5455670 YP_001411725.1 CDS Plav_0445 NC_009719.1 479735 480790 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: esterase, putative; alpha/beta hydrolase domain-containing protein 479735..480790 Parvibaculum lavamentivorans DS-1 5453577 YP_001411726.1 CDS Plav_0446 NC_009719.1 480794 481144 D KEGG: rpc:RPC_1797 hypothetical protein; hypothetical protein 480794..481144 Parvibaculum lavamentivorans DS-1 5454676 YP_001411727.1 CDS Plav_0447 NC_009719.1 481402 481977 D PFAM: protein of unknown function UPF0016; KEGG: mag:amb2468 predicted membrane protein; hypothetical protein 481402..481977 Parvibaculum lavamentivorans DS-1 5455895 YP_001411728.1 CDS Plav_0448 NC_009719.1 481968 482846 R PFAM: alpha/beta hydrolase fold; KEGG: bsu:BG12888 similar to epoxide hydrolase; alpha/beta hydrolase fold protein complement(481968..482846) Parvibaculum lavamentivorans DS-1 5455968 YP_001411729.1 CDS Plav_0449 NC_009719.1 482966 483940 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hne:HNE_2975 oxidoreductase, zinc-binding dehydrogenase family; alcohol dehydrogenase 482966..483940 Parvibaculum lavamentivorans DS-1 5456821 YP_001411730.1 CDS Plav_0450 NC_009719.1 484210 485100 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_0595 oxidoreductase, short chain dehydrogenase/reductase family protein; short-chain dehydrogenase/reductase SDR complement(484210..485100) Parvibaculum lavamentivorans DS-1 5454710 YP_001411731.1 CDS Plav_0451 NC_009719.1 485387 485659 R KEGG: ret:RHE_CH00543 hypothetical protein; hypothetical protein complement(485387..485659) Parvibaculum lavamentivorans DS-1 5456843 YP_001411732.1 CDS Plav_0452 NC_009719.1 485705 486556 R PFAM: MscS Mechanosensitive ion channel; KEGG: mmr:Mmar10_0527 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(485705..486556) Parvibaculum lavamentivorans DS-1 5456204 YP_001411733.1 CDS Plav_0453 NC_009719.1 486776 489331 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: mes:Meso_0029 DEAD/H associated; DEAD/DEAH box helicase 486776..489331 Parvibaculum lavamentivorans DS-1 5455222 YP_001411734.1 CDS Plav_0454 NC_009719.1 489409 490125 D KEGG: bja:blr1149 putative ICC-like phosphoesterases; putative ICC-like phosphoesterase 489409..490125 Parvibaculum lavamentivorans DS-1 5453400 YP_001411735.1 CDS Plav_0455 NC_009719.1 490296 491075 R PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: rpb:RPB_4376 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein transmembrane subunit complement(490296..491075) Parvibaculum lavamentivorans DS-1 5455628 YP_001411736.1 CDS Plav_0456 NC_009719.1 491189 491986 R KEGG: mag:amb4405 hypothetical protein; hypothetical protein complement(491189..491986) Parvibaculum lavamentivorans DS-1 5456384 YP_001411737.1 CDS Plav_0457 NC_009719.1 491983 492906 R PFAM: protein of unknown function DUF81; KEGG: mlo:mll5620 hypothetical protein; hypothetical protein complement(491983..492906) Parvibaculum lavamentivorans DS-1 5455702 YP_001411738.1 CDS Plav_0458 NC_009719.1 493044 496082 R PFAM: Peptidoglycan-binding domain 1 protein; Sel1 domain protein repeat-containing protein; KEGG: rle:RL0588 putative peptidoglycan binding protein; peptidoglycan-binding domain-containing protein complement(493044..496082) Parvibaculum lavamentivorans DS-1 5456957 YP_001411739.1 CDS Plav_0459 NC_009719.1 496312 497394 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pmy:Pmen_4514 TRAP dicarboxylate transporter-DctP subunit; TRAP C4-dicarboxylate transport system permease subunit DctP complement(496312..497394) Parvibaculum lavamentivorans DS-1 5455694 YP_001411740.1 CDS Plav_0460 NC_009719.1 497453 498007 R PFAM: SCP-like extracellular; KEGG: hypothetical protein; hypothetical protein complement(497453..498007) Parvibaculum lavamentivorans DS-1 5456992 YP_001411741.1 CDS Plav_0461 NC_009719.1 498266 498790 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: transcriptional regulator, putative; MerR family transcriptional regulator 498266..498790 Parvibaculum lavamentivorans DS-1 5454095 YP_001411742.1 CDS Plav_0462 NC_009719.1 498850 500643 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bbt:BBta_0815 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 498850..500643 Parvibaculum lavamentivorans DS-1 5455202 YP_001411743.1 CDS Plav_0463 NC_009719.1 500668 501825 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_5152 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 500668..501825 Parvibaculum lavamentivorans DS-1 5454266 YP_001411744.1 CDS Plav_0464 NC_009719.1 501874 503079 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 501874..503079 Parvibaculum lavamentivorans DS-1 5456140 YP_001411745.1 CDS Plav_0465 NC_009719.1 503087 505339 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 503087..505339 Parvibaculum lavamentivorans DS-1 5456435 YP_001411746.1 CDS Plav_0466 NC_009719.1 505563 507392 R PFAM: protein of unknown function DUF1302; KEGG: cps:CPS_3432 hypothetical protein; hypothetical protein complement(505563..507392) Parvibaculum lavamentivorans DS-1 5456013 YP_001411747.1 CDS Plav_0467 NC_009719.1 508097 509950 R PFAM: protein of unknown function DUF1302; KEGG: pau:PA14_19810 hypothetical protein; hypothetical protein complement(508097..509950) Parvibaculum lavamentivorans DS-1 5455108 YP_001411748.1 CDS Plav_0468 NC_009719.1 510636 511709 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bcn:Bcen_2046 transcriptional regulator, AraC family; AraC family transcriptional regulator 510636..511709 Parvibaculum lavamentivorans DS-1 5454242 YP_001411749.1 CDS Plav_0469 NC_009719.1 511684 512364 D PFAM: ThiJ/PfpI domain protein; KEGG: sco:SCO6747 hypothetical protein; ThiJ/PfpI domain-containing protein 511684..512364 Parvibaculum lavamentivorans DS-1 5453687 YP_001411750.1 CDS Plav_0470 NC_009719.1 512376 513008 D PFAM: ThiJ/PfpI domain protein; KEGG: gur:Gura_3528 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 512376..513008 Parvibaculum lavamentivorans DS-1 5453647 YP_001411751.1 CDS Plav_0471 NC_009719.1 513046 514065 D KEGG: bbr:BB1197 hypothetical protein; hypothetical protein 513046..514065 Parvibaculum lavamentivorans DS-1 5455032 YP_001411752.1 CDS Plav_0472 NC_009719.1 514112 515080 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: fal:FRAAL0539 conserved hypothetical protein, putative esterase/lipase domain; alpha/beta hydrolase domain-containing protein 514112..515080 Parvibaculum lavamentivorans DS-1 5456259 YP_001411753.1 CDS Plav_0473 NC_009719.1 515077 515289 R KEGG: mes:Meso_0629 hypothetical protein; hypothetical protein complement(515077..515289) Parvibaculum lavamentivorans DS-1 5455499 YP_001411754.1 CDS Plav_0474 NC_009719.1 515428 516306 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 515428..516306 Parvibaculum lavamentivorans DS-1 5456818 YP_001411755.1 CDS Plav_0475 NC_009719.1 516306 516911 D PFAM: regulatory protein TetR; KEGG: mjl:Mjls_2665 putative transcriptional regulator, TetR family; TetR family transcriptional regulator 516306..516911 Parvibaculum lavamentivorans DS-1 5455249 YP_001411756.1 CDS Plav_0476 NC_009719.1 516963 517856 D KEGG: hypothetical protein; thioesterase-like protein 516963..517856 Parvibaculum lavamentivorans DS-1 5455828 YP_001411757.1 CDS Plav_0477 NC_009719.1 517899 518819 D KEGG: hypothetical protein; hypothetical protein 517899..518819 Parvibaculum lavamentivorans DS-1 5456563 YP_001411758.1 CDS Plav_0478 NC_009719.1 518841 520004 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pol:Bpro_2477 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 518841..520004 Parvibaculum lavamentivorans DS-1 5455764 YP_001411759.1 CDS Plav_0479 NC_009719.1 520001 520927 R PFAM: alpha/beta hydrolase fold; KEGG: hydrolase, putative; alpha/beta hydrolase fold protein complement(520001..520927) Parvibaculum lavamentivorans DS-1 5454663 YP_001411760.1 CDS Plav_0480 NC_009719.1 520933 522099 R KEGG: mgi:Mflv_4464 hypothetical protein; hypothetical protein complement(520933..522099) Parvibaculum lavamentivorans DS-1 5455226 YP_001411761.1 CDS Plav_0481 NC_009719.1 522104 522916 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro00366 probable enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(522104..522916) Parvibaculum lavamentivorans DS-1 5457035 YP_001411762.1 CDS Plav_0482 NC_009719.1 523011 523517 R KEGG: mpt:Mpe_A0856 hypothetical protein; hypothetical protein complement(523011..523517) Parvibaculum lavamentivorans DS-1 5453898 YP_001411763.1 CDS Plav_0483 NC_009719.1 523586 524374 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_2754 NAD dependent epimerase/dehydratase family protein; short-chain dehydrogenase/reductase SDR 523586..524374 Parvibaculum lavamentivorans DS-1 5456244 YP_001411764.1 CDS Plav_0484 NC_009719.1 524574 524855 R KEGG: har:HEAR1910 hypothetical protein; hypothetical protein complement(524574..524855) Parvibaculum lavamentivorans DS-1 5455116 YP_001411765.1 CDS Plav_0485 NC_009719.1 524969 526075 R KEGG: eli:ELI_11930 glutathione S-transferase; glutathione S-transferase complement(524969..526075) Parvibaculum lavamentivorans DS-1 5453405 YP_001411766.1 CDS Plav_0486 NC_009719.1 526142 527020 R KEGG: bbr:BB0818 hypothetical protein; hypothetical protein complement(526142..527020) Parvibaculum lavamentivorans DS-1 5455649 YP_001411767.1 CDS Plav_0487 NC_009719.1 527057 527437 R hypothetical protein complement(527057..527437) Parvibaculum lavamentivorans DS-1 5453463 YP_001411768.1 CDS Plav_0488 NC_009719.1 527684 527986 D hypothetical protein 527684..527986 Parvibaculum lavamentivorans DS-1 5453950 YP_001411769.1 CDS Plav_0489 NC_009719.1 528548 529891 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: mag:amb4019 predicted methyltransferase; type 12 methyltransferase complement(528548..529891) Parvibaculum lavamentivorans DS-1 5456949 YP_001411770.1 CDS Plav_0490 NC_009719.1 530096 530947 R PFAM: MaoC domain protein dehydratase; KEGG: rpe:RPE_3528 MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase complement(530096..530947) Parvibaculum lavamentivorans DS-1 5456776 YP_001411771.1 CDS Plav_0491 NC_009719.1 531066 531503 R PFAM: thioesterase superfamily protein; KEGG: pde:Pden_3220 thioesterase superfamily protein; thioesterase superfamily protein complement(531066..531503) Parvibaculum lavamentivorans DS-1 5456113 YP_001411772.1 CDS Plav_0492 NC_009719.1 531500 532039 R PFAM: thioesterase superfamily protein; KEGG: hne:HNE_0573 thioesterase family protein; thioesterase superfamily protein complement(531500..532039) Parvibaculum lavamentivorans DS-1 5454945 YP_001411773.1 CDS Plav_0493 NC_009719.1 532127 532612 R hypothetical protein complement(532127..532612) Parvibaculum lavamentivorans DS-1 5455306 YP_001411774.1 CDS Plav_0494 NC_009719.1 532959 534179 D TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: thiolase family protein; acetyl-CoA acetyltransferase 532959..534179 Parvibaculum lavamentivorans DS-1 5454877 YP_001411775.1 CDS Plav_0495 NC_009719.1 534364 534804 D PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_0946 MaoC-like dehydratase; dehydratase 534364..534804 Parvibaculum lavamentivorans DS-1 5456772 YP_001411776.1 CDS Plav_0496 NC_009719.1 534801 536003 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_1134 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein complement(534801..536003) Parvibaculum lavamentivorans DS-1 5455519 YP_001411777.1 CDS Plav_0497 NC_009719.1 536029 536946 R KEGG: nar:Saro_3777 hypothetical protein; hypothetical protein complement(536029..536946) Parvibaculum lavamentivorans DS-1 5454598 YP_001411778.1 CDS Plav_0498 NC_009719.1 537073 537699 D PFAM: regulatory protein TetR; KEGG: cvi:CV4310 probable transcription regulator, TetR family; TetR family transcriptional regulator 537073..537699 Parvibaculum lavamentivorans DS-1 5456826 YP_001411779.1 CDS Plav_0499 NC_009719.1 537704 539062 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_1134 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein complement(537704..539062) Parvibaculum lavamentivorans DS-1 5454670 YP_001411780.1 CDS Plav_0500 NC_009719.1 539263 541089 D PFAM: TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: aeh:Mlg_0921 sodium/hydrogen exchanger; sodium/hydrogen exchanger 539263..541089 Parvibaculum lavamentivorans DS-1 5455760 YP_001411781.1 CDS Plav_0501 NC_009719.1 541167 541937 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: hne:HNE_0217 NAD dependent epimerase/dehydratase family; short-chain dehydrogenase/reductase SDR 541167..541937 Parvibaculum lavamentivorans DS-1 5456063 YP_001411782.1 CDS Plav_0502 NC_009719.1 541972 542712 R PFAM: glutamine amidotransferase class-I; KEGG: azo:azo2531 conserved hypothetical protein; glutamine amidotransferase complement(541972..542712) Parvibaculum lavamentivorans DS-1 5456136 YP_001411783.1 CDS Plav_0503 NC_009719.1 542722 543702 R TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; KEGG: xcv:XCV0945 putative proline imino-peptidase; proline iminopeptidase complement(542722..543702) Parvibaculum lavamentivorans DS-1 5455588 YP_001411784.1 CDS Plav_0504 NC_009719.1 544034 546019 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 544034..546019 Parvibaculum lavamentivorans DS-1 5454915 YP_001411785.1 CDS nrdF NC_009719.1 546114 547073 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 546114..547073 Parvibaculum lavamentivorans DS-1 5454596 YP_001411786.1 CDS Plav_0506 NC_009719.1 547216 547557 D PFAM: histone family protein DNA-binding protein; KEGG: nwi:Nwi_1892 histone-like DNA-binding protein; histone family DNA-binding protein 547216..547557 Parvibaculum lavamentivorans DS-1 5454963 YP_001411787.1 CDS Plav_0507 NC_009719.1 547625 548641 D KEGG: cps:CPS_3721 putative glycosyl hydrolase; exo-beta-1 3-glucanase-like protein 547625..548641 Parvibaculum lavamentivorans DS-1 5453417 YP_001411788.1 CDS Plav_0508 NC_009719.1 548638 549279 R PFAM: Glutathione S-transferase domain; KEGG: rde:RD1_3296 glutathione S-transferase, putative; glutathione S-transferase domain-containing protein complement(548638..549279) Parvibaculum lavamentivorans DS-1 5454887 YP_001411789.1 CDS Plav_0509 NC_009719.1 549661 550569 D PFAM: periplasmic binding protein; KEGG: pde:Pden_1367 periplasmic binding protein; periplasmic-binding protein 549661..550569 Parvibaculum lavamentivorans DS-1 5454891 YP_001411790.1 CDS Plav_0510 NC_009719.1 550571 551572 D PFAM: transport system permease protein; KEGG: bms:BR1345 iron compound ABC transporter, permease protein; transport system permease 550571..551572 Parvibaculum lavamentivorans DS-1 5455282 YP_001411791.1 CDS Plav_0511 NC_009719.1 551572 552351 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swi:Swit_0257 ABC transporter related; ABC transporter-like protein 551572..552351 Parvibaculum lavamentivorans DS-1 5455804 YP_001411792.1 CDS Plav_0512 NC_009719.1 552465 553574 R KEGG: abo:ABO_1416 hypothetical protein; hypothetical protein complement(552465..553574) Parvibaculum lavamentivorans DS-1 5453947 YP_001411793.1 CDS Plav_0513 NC_009719.1 553710 555137 D PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: atc:AGR_C_2249 blue-light photoreceptor; deoxyribodipyrimidine photo-lyase 553710..555137 Parvibaculum lavamentivorans DS-1 5455547 YP_001411794.1 CDS Plav_0514 NC_009719.1 555143 555847 R KEGG: hne:HNE_1421 hypothetical protein; hypothetical protein complement(555143..555847) Parvibaculum lavamentivorans DS-1 5454856 YP_001411795.1 CDS Plav_0515 NC_009719.1 555922 556692 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: bba:Bd1632 23S rRNA methyltransferase; tRNA/rRNA methyltransferase SpoU complement(555922..556692) Parvibaculum lavamentivorans DS-1 5454200 YP_001411796.1 CDS Plav_0516 NC_009719.1 556859 557551 D PFAM: YhhN family protein; KEGG: mlo:mll3549 hypothetical protein; hypothetical protein 556859..557551 Parvibaculum lavamentivorans DS-1 5454874 YP_001411797.1 CDS Plav_0517 NC_009719.1 557887 558429 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rpa:RPA2110 probable transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 557887..558429 Parvibaculum lavamentivorans DS-1 5456814 YP_001411798.1 CDS Plav_0518 NC_009719.1 558659 558907 D hypothetical protein 558659..558907 Parvibaculum lavamentivorans DS-1 5456614 YP_001411799.1 CDS Plav_0519 NC_009719.1 559146 560420 D TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: mes:Meso_0192 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 559146..560420 Parvibaculum lavamentivorans DS-1 5454213 YP_001411800.1 CDS Plav_0520 NC_009719.1 560437 560877 D KEGG: mes:Meso_0191 hypothetical protein; hypothetical protein 560437..560877 Parvibaculum lavamentivorans DS-1 5454097 YP_001411801.1 CDS Plav_0521 NC_009719.1 561111 562406 D PFAM: histidinol dehydrogenase; KEGG: bja:blr1256 histidinol dehydrogenase; histidinol dehydrogenase 561111..562406 Parvibaculum lavamentivorans DS-1 5456569 YP_001411802.1 CDS Plav_0522 NC_009719.1 562650 563171 D PFAM: conserved hypothetical protein; KEGG: ret:RHE_CH00582 hypothetical protein; hypothetical protein 562650..563171 Parvibaculum lavamentivorans DS-1 5455767 YP_001411803.1 CDS Plav_0523 NC_009719.1 563174 563656 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rru:Rru_A2769 protein tyrosine phosphatase; protein tyrosine phosphatase 563174..563656 Parvibaculum lavamentivorans DS-1 5456738 YP_001411804.1 CDS Plav_0524 NC_009719.1 563754 564236 R PFAM: GCN5-related N-acetyltransferase; KEGG: sus:Acid_2411 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(563754..564236) Parvibaculum lavamentivorans DS-1 5455647 YP_001411805.1 CDS Plav_0525 NC_009719.1 564398 565123 D PFAM: protein of unknown function DUF541; KEGG: maq:Maqu_3473 protein of unknown function DUF541; hypothetical protein 564398..565123 Parvibaculum lavamentivorans DS-1 5454131 YP_001411806.1 CDS infA NC_009719.1 565244 565462 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 565244..565462 Parvibaculum lavamentivorans DS-1 5456341 YP_001411807.1 CDS Plav_0527 NC_009719.1 565470 566069 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: nar:Saro_1057 maf protein; maf protein 565470..566069 Parvibaculum lavamentivorans DS-1 5453494 YP_001411808.1 CDS Plav_0528 NC_009719.1 566193 567713 D TIGRFAM: ribonuclease, Rne/Rng family; KEGG: gsu:GSU3239 ribonuclease G; ribonuclease 566193..567713 Parvibaculum lavamentivorans DS-1 5454917 YP_001411809.1 CDS Plav_0529 NC_009719.1 567729 567956 D PFAM: protein of unknown function DUF329; KEGG: sme:SMc02312 zinc-binding protein; hypothetical protein 567729..567956 Parvibaculum lavamentivorans DS-1 5454232 YP_001411810.1 CDS Plav_0530 NC_009719.1 568515 569699 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rru:Rru_A2050 secretion protein HlyD; RND family efflux transporter MFP subunit 568515..569699 Parvibaculum lavamentivorans DS-1 5456802 YP_001411811.1 CDS Plav_0531 NC_009719.1 569749 572883 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rru:Rru_A2051 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family protein 569749..572883 Parvibaculum lavamentivorans DS-1 5456447 YP_001411812.1 CDS Plav_0532 NC_009719.1 572880 574307 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rru:Rru_A2052 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 572880..574307 Parvibaculum lavamentivorans DS-1 5454429 YP_001411813.1 CDS Plav_0533 NC_009719.1 574352 574978 D PFAM: regulatory protein TetR; KEGG: pat:Patl_0743 transcriptional regulator, TetR family; TetR family transcriptional regulator 574352..574978 Parvibaculum lavamentivorans DS-1 5453590 YP_001411814.1 CDS Plav_0534 NC_009719.1 574999 576075 R TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mes:Meso_4538 tartrate dehydrogenase; tartrate dehydrogenase complement(574999..576075) Parvibaculum lavamentivorans DS-1 5453971 YP_001411815.1 CDS Plav_0535 NC_009719.1 576215 576985 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: swi:Swit_4322 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(576215..576985) Parvibaculum lavamentivorans DS-1 5455848 YP_001411816.1 CDS Plav_0536 NC_009719.1 577130 578461 D TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pae:PA5468 probable citrate transporter; CitMHS family citrate/H+ symporter 577130..578461 Parvibaculum lavamentivorans DS-1 5453912 YP_001411817.1 CDS Plav_0537 NC_009719.1 578475 579476 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: hne:HNE_1475 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(578475..579476) Parvibaculum lavamentivorans DS-1 5456822 YP_001411818.1 CDS Plav_0538 NC_009719.1 579609 581003 D KEGG: hne:HNE_1471 hypothetical protein; hypothetical protein 579609..581003 Parvibaculum lavamentivorans DS-1 5453949 YP_001411819.1 CDS Plav_0539 NC_009719.1 581000 581311 D KEGG: hne:HNE_1472 hypothetical protein; hypothetical protein 581000..581311 Parvibaculum lavamentivorans DS-1 5455483 YP_001411820.1 CDS Plav_0540 NC_009719.1 581518 584631 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rso:RS05182 putative alpha-amylase-related protein; alpha amylase 581518..584631 Parvibaculum lavamentivorans DS-1 5455897 YP_001411821.1 CDS Plav_0541 NC_009719.1 584628 587813 D TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: reu:Reut_B4228 alpha amylase, catalytic subdomain; trehalose synthase 584628..587813 Parvibaculum lavamentivorans DS-1 5454146 YP_001411822.1 CDS Plav_0542 NC_009719.1 587813 590011 D TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; KEGG: rso:RSp0239 glycogen branching enzyme; 1,4-alpha-glucan branching protein 587813..590011 Parvibaculum lavamentivorans DS-1 5456744 YP_001411823.1 CDS Plav_0543 NC_009719.1 590008 592122 D TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bxe:Bxe_B2864 putative glycogen operon protein GlgX; glycogen debranching protein GlgX 590008..592122 Parvibaculum lavamentivorans DS-1 5454854 YP_001411824.1 CDS Plav_0544 NC_009719.1 592119 593837 D TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pfl:PFL_2886 malto-oligosyltrehalose trehalohydrolase; malto-oligosyltrehalose trehalohydrolase 592119..593837 Parvibaculum lavamentivorans DS-1 5454812 YP_001411825.1 CDS Plav_0545 NC_009719.1 593834 595843 D TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; KEGG: gbe:GbCGDNIH1_0748 4-alpha-glucanotransferase; 4-alpha-glucanotransferase 593834..595843 Parvibaculum lavamentivorans DS-1 5455417 YP_001411826.1 CDS Plav_0546 NC_009719.1 595840 598350 D TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gbe:GbCGDNIH1_0747 (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase; malto-oligosyltrehalose synthase 595840..598350 Parvibaculum lavamentivorans DS-1 5455244 YP_001411827.1 CDS Plav_0547 NC_009719.1 598433 598702 D hypothetical protein 598433..598702 Parvibaculum lavamentivorans DS-1 5455190 YP_001411828.1 CDS Plav_0548 NC_009719.1 598728 599513 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpd:RPD_3208 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(598728..599513) Parvibaculum lavamentivorans DS-1 5455908 YP_001411829.1 CDS Plav_0549 NC_009719.1 599588 599947 R hypothetical protein complement(599588..599947) Parvibaculum lavamentivorans DS-1 5456784 YP_001411830.1 CDS Plav_0550 NC_009719.1 600041 600292 R hypothetical protein complement(600041..600292) Parvibaculum lavamentivorans DS-1 5454594 YP_001411831.1 CDS Plav_0551 NC_009719.1 600390 600902 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: bur:Bcep18194_B2908 hypothetical protein; cupin 600390..600902 Parvibaculum lavamentivorans DS-1 5454151 YP_001411832.1 CDS Plav_0552 NC_009719.1 600906 602939 R PFAM: AsmA family protein; KEGG: mag:amb3407 uncharacterized protein involved in outer membrane biogenesis; AsmA family protein complement(600906..602939) Parvibaculum lavamentivorans DS-1 5455542 YP_001411833.1 CDS Plav_0553 NC_009719.1 603413 605209 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mlr5867 ABC transporter, ATP-binding protein exsA; ABC transporter-like protein 603413..605209 Parvibaculum lavamentivorans DS-1 5455391 YP_001411834.1 CDS Plav_0554 NC_009719.1 605273 607249 D TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: azo:azo2149 putative acetoacetyl-CoA synthase; acetoacetyl-CoA synthase 605273..607249 Parvibaculum lavamentivorans DS-1 5453579 YP_001411835.1 CDS Plav_0555 NC_009719.1 607246 608187 R PFAM: alpha/beta hydrolase fold; KEGG: acr:Acry_1024 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(607246..608187) Parvibaculum lavamentivorans DS-1 5453583 YP_001411836.1 CDS Plav_0556 NC_009719.1 608369 609742 D PFAM: sodium:neurotransmitter symporter; KEGG: csa:Csal_3274 sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 608369..609742 Parvibaculum lavamentivorans DS-1 5453993 YP_001411837.1 CDS Plav_0557 NC_009719.1 610115 610780 D PFAM: Glutathione S-transferase domain; KEGG: abo:ABO_0876 transferase; glutathione S-transferase domain-containing protein 610115..610780 Parvibaculum lavamentivorans DS-1 5456685 YP_001411838.1 CDS Plav_0558 NC_009719.1 610915 612669 D PFAM: AMP-dependent synthetase and ligase; KEGG: long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 610915..612669 Parvibaculum lavamentivorans DS-1 5456137 YP_001411839.1 CDS Plav_0559 NC_009719.1 612862 613635 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sal:Sala_1855 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 612862..613635 Parvibaculum lavamentivorans DS-1 5456176 YP_001411840.1 CDS Plav_0560 NC_009719.1 613783 616536 R PFAM: glycosyl transferase family 2; KEGG: ppu:PP_1526 beta-(1-3)-glucosyl transferase, putative; glycosyl transferase family protein complement(613783..616536) Parvibaculum lavamentivorans DS-1 5456473 YP_001411841.1 CDS Plav_0561 NC_009719.1 616716 618467 R PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: hne:HNE_3525 amidohydrolase family protein/D-aminoacylase domain protein; amidohydrolase 3 complement(616716..618467) Parvibaculum lavamentivorans DS-1 5454609 YP_001411842.1 CDS Plav_0562 NC_009719.1 618675 619181 D KEGG: nwi:Nwi_2312 hypothetical protein; hypothetical protein 618675..619181 Parvibaculum lavamentivorans DS-1 5454298 YP_001411843.1 CDS Plav_0563 NC_009719.1 619195 620379 D TIGRFAM: Cytochrome c oxidase subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: rpe:RPE_3865 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 619195..620379 Parvibaculum lavamentivorans DS-1 5455237 YP_001411844.1 CDS Plav_0564 NC_009719.1 620376 622898 D TIGRFAM: Cytochrome c oxidase subunit I type; PFAM: cytochrome c oxidase subunit I; KEGG: nwi:Nwi_2314 cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I type 620376..622898 Parvibaculum lavamentivorans DS-1 5456502 YP_001411845.1 CDS Plav_0565 NC_009719.1 622895 623239 D KEGG: rpc:RPC_3851 hypothetical protein; hypothetical protein 622895..623239 Parvibaculum lavamentivorans DS-1 5455985 YP_001411846.1 CDS Plav_0566 NC_009719.1 623244 624035 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(623244..624035) Parvibaculum lavamentivorans DS-1 5455782 YP_001411847.1 CDS Plav_0567 NC_009719.1 624293 625435 R PFAM: protein of unknown function DUF819; KEGG: swi:Swit_1697 protein of unknown function DUF819; hypothetical protein complement(624293..625435) Parvibaculum lavamentivorans DS-1 5457023 YP_001411848.1 CDS Plav_0568 NC_009719.1 625590 625829 D hypothetical protein 625590..625829 Parvibaculum lavamentivorans DS-1 5453372 YP_001411849.1 CDS Plav_0569 NC_009719.1 625833 626912 R KEGG: rru:Rru_A2001 hypothetical protein; hypothetical protein complement(625833..626912) Parvibaculum lavamentivorans DS-1 5455454 YP_001411850.1 CDS Plav_0570 NC_009719.1 627055 628632 D PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV1259 putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase; AMP-dependent synthetase and ligase 627055..628632 Parvibaculum lavamentivorans DS-1 5455255 YP_001411851.1 CDS Plav_0571 NC_009719.1 628736 629935 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0672 multidrug resistance transporter, Bcr/CflA family; Bcr/CflA subfamily drug resistance transporter 628736..629935 Parvibaculum lavamentivorans DS-1 5454448 YP_001411852.1 CDS Plav_0572 NC_009719.1 630029 630805 R PFAM: alpha/beta hydrolase fold; KEGG: swi:Swit_1445 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(630029..630805) Parvibaculum lavamentivorans DS-1 5453402 YP_001411853.1 CDS Plav_0573 NC_009719.1 630805 632070 R PFAM: luciferase family protein; KEGG: swi:Swit_1444 luciferase family protein; luciferase family protein complement(630805..632070) Parvibaculum lavamentivorans DS-1 5453712 YP_001411854.1 CDS Plav_0574 NC_009719.1 632281 632682 D KEGG: mag:amb1296 hypothetical protein; hypothetical protein 632281..632682 Parvibaculum lavamentivorans DS-1 5454154 YP_001411855.1 CDS Plav_0575 NC_009719.1 632878 634263 D KEGG: mmr:Mmar10_0269 major facilitator superfamily MFS_1; major facilitator superfamily transporter 632878..634263 Parvibaculum lavamentivorans DS-1 5456314 YP_001411856.1 CDS Plav_0576 NC_009719.1 634388 636124 D PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: hne:HNE_3525 amidohydrolase family protein/D-aminoacylase domain protein; amidohydrolase 3 634388..636124 Parvibaculum lavamentivorans DS-1 5455969 YP_001411857.1 CDS Plav_0577 NC_009719.1 636134 637153 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bbr:BB3554 hypothetical protein; taurine catabolism dioxygenase TauD/TfdA 636134..637153 Parvibaculum lavamentivorans DS-1 5454015 YP_001411858.1 CDS Plav_0578 NC_009719.1 637160 638044 R PFAM: alpha/beta hydrolase fold; KEGG: hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold protein complement(637160..638044) Parvibaculum lavamentivorans DS-1 5455291 YP_001411859.1 CDS Plav_0579 NC_009719.1 638278 638889 D KEGG: bpa:BPP3905 histone protein; hypothetical protein 638278..638889 Parvibaculum lavamentivorans DS-1 5454435 YP_001411860.1 CDS Plav_0580 NC_009719.1 639026 639964 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: hypothetical protein; 2-nitropropane dioxygenase 639026..639964 Parvibaculum lavamentivorans DS-1 5456253 YP_001411861.1 CDS Plav_0581 NC_009719.1 639969 640511 R hypothetical protein complement(639969..640511) Parvibaculum lavamentivorans DS-1 5453414 YP_001411862.1 CDS Plav_0582 NC_009719.1 641009 641524 D PFAM: S-adenosylmethionine decarboxylase related; KEGG: tcx:Tcr_0272 S-adenosylmethionine decarboxylase related; S-adenosylmethionine decarboxylase-like protein 641009..641524 Parvibaculum lavamentivorans DS-1 5453375 YP_001411863.1 CDS Plav_0583 NC_009719.1 641524 642396 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 641524..642396 Parvibaculum lavamentivorans DS-1 5455615 YP_001411864.1 CDS Plav_0584 NC_009719.1 642535 642738 D hypothetical protein 642535..642738 Parvibaculum lavamentivorans DS-1 5456674 YP_001411865.1 CDS Plav_0585 NC_009719.1 642761 643252 R TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; KEGG: reu:Reut_A1963 protein of unknown function 1935; ribonuclease activity A regulator complement(642761..643252) Parvibaculum lavamentivorans DS-1 5455951 YP_001411866.1 CDS Plav_0586 NC_009719.1 643447 644991 D KEGG: pau:PA14_37380 putative flavin-binding monooxygenase; putative flavin-binding monooxygenase 643447..644991 Parvibaculum lavamentivorans DS-1 5454671 YP_001411867.1 CDS Plav_0587 NC_009719.1 645207 645809 D KEGG: aba:Acid345_2195 hypothetical protein; hypothetical protein 645207..645809 Parvibaculum lavamentivorans DS-1 5455866 YP_001411868.1 CDS Plav_0588 NC_009719.1 645816 646610 R PFAM: helix-turn-helix domain protein; KEGG: pmy:Pmen_4350 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(645816..646610) Parvibaculum lavamentivorans DS-1 5455773 YP_001411869.1 CDS Plav_0589 NC_009719.1 646742 647134 D KEGG: pmy:Pmen_4349 hypothetical protein; hypothetical protein 646742..647134 Parvibaculum lavamentivorans DS-1 5454463 YP_001411870.1 CDS Plav_0590 NC_009719.1 647342 649369 R SMART: Parallel beta-helix repeat; KEGG: mlo:mll4444 hypothetical protein; parallel beta-helix repeat-containing protein complement(647342..649369) Parvibaculum lavamentivorans DS-1 5455722 YP_001411871.1 CDS Plav_0591 NC_009719.1 649514 651673 R KEGG: mlo:mll4444 hypothetical protein; hypothetical protein complement(649514..651673) Parvibaculum lavamentivorans DS-1 5453442 YP_001411872.1 CDS Plav_0592 NC_009719.1 651931 653229 R TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: nha:Nham_1097 isocitrate lyase; isocitrate lyase complement(651931..653229) Parvibaculum lavamentivorans DS-1 5454799 YP_001411873.1 CDS Plav_0593 NC_009719.1 653264 654889 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(653264..654889) Parvibaculum lavamentivorans DS-1 5454106 YP_001411874.1 CDS Plav_0594 NC_009719.1 655081 656526 D PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: bja:bll2454 probable transcriptional regulator; hypothetical protein 655081..656526 Parvibaculum lavamentivorans DS-1 5456318 YP_001411875.1 CDS Plav_0595 NC_009719.1 656656 657666 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: rde:RD1_0794 cytochrome oxidase, subunit II, putative; cytochrome d ubiquinol oxidase subunit II complement(656656..657666) Parvibaculum lavamentivorans DS-1 5455695 YP_001411876.1 CDS Plav_0596 NC_009719.1 657676 659067 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: pde:Pden_4010 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(657676..659067) Parvibaculum lavamentivorans DS-1 5455477 YP_001411877.1 CDS Plav_0597 NC_009719.1 659214 660743 R PFAM: histidine kinase A domain protein; KEGG: mag:amb0567 signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(659214..660743) Parvibaculum lavamentivorans DS-1 5453954 YP_001411878.1 CDS hisS NC_009719.1 661185 662705 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 661185..662705 Parvibaculum lavamentivorans DS-1 5456769 YP_001411879.1 CDS hisZ NC_009719.1 662798 663976 D May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 662798..663976 Parvibaculum lavamentivorans DS-1 5456420 YP_001411880.1 CDS hisG NC_009719.1 663973 664950 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 663973..664950 Parvibaculum lavamentivorans DS-1 5456633 YP_001411881.1 CDS Plav_0601 NC_009719.1 664955 665701 D KEGG: hne:HNE_2773 hypothetical protein; hypothetical protein 664955..665701 Parvibaculum lavamentivorans DS-1 5456317 YP_001411882.1 CDS Plav_0602 NC_009719.1 665684 666511 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psp:PSPPH_2776 3-oxoacyl-[acyl-carrier protein] reductase; short-chain dehydrogenase/reductase SDR complement(665684..666511) Parvibaculum lavamentivorans DS-1 5456988 YP_001411883.1 CDS Plav_0603 NC_009719.1 666508 667851 R PFAM: flavin-containing monooxygenase FMO; KEGG: xcv:XCV2088 FAD containing monooxygenase; flavin-containing monooxygenase complement(666508..667851) Parvibaculum lavamentivorans DS-1 5454655 YP_001411884.1 CDS Plav_0604 NC_009719.1 667946 668563 D PFAM: regulatory protein TetR; KEGG: mlo:mll3939 transcriptional regulator (TetR-family); TetR family transcriptional regulator 667946..668563 Parvibaculum lavamentivorans DS-1 5455704 YP_001411885.1 CDS Plav_0605 NC_009719.1 668959 669756 D PFAM: thioesterase superfamily protein; KEGG: rru:Rru_A1719 thioesterase superfamily; thioesterase superfamily protein 668959..669756 Parvibaculum lavamentivorans DS-1 5456878 YP_001411886.1 CDS Plav_0606 NC_009719.1 669815 672106 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 669815..672106 Parvibaculum lavamentivorans DS-1 5456182 YP_001411887.1 CDS Plav_0607 NC_009719.1 672201 672992 D PFAM: protein of unknown function DUF72; KEGG: pde:Pden_4949 protein of unknown function DUF72; hypothetical protein 672201..672992 Parvibaculum lavamentivorans DS-1 5455441 YP_001411888.1 CDS Plav_0608 NC_009719.1 672989 674251 R PFAM: glycine hydroxymethyltransferase; KEGG: bja:bll5912 serine hydroxymethyltransferase; glycine hydroxymethyltransferase complement(672989..674251) Parvibaculum lavamentivorans DS-1 5455307 YP_001411889.1 CDS Plav_0609 NC_009719.1 674449 675630 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_3225 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein complement(674449..675630) Parvibaculum lavamentivorans DS-1 5454286 YP_001411890.1 CDS Plav_0610 NC_009719.1 675793 677445 R TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: rpd:RPD_4127 chaperonin GroEL; chaperonin GroEL complement(675793..677445) Parvibaculum lavamentivorans DS-1 5454766 YP_001411891.1 CDS groES NC_009719.1 677538 677855 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(677538..677855) Parvibaculum lavamentivorans DS-1 5456061 YP_001411892.1 CDS Plav_0612 NC_009719.1 678028 678636 R PFAM: regulatory protein TetR; KEGG: stp:Strop_1714 regulatory protein, TetR; TetR family transcriptional regulator complement(678028..678636) Parvibaculum lavamentivorans DS-1 5455301 YP_001411893.1 CDS Plav_0613 NC_009719.1 678642 678893 R hypothetical protein complement(678642..678893) Parvibaculum lavamentivorans DS-1 5454971 YP_001411894.1 CDS Plav_0614 NC_009719.1 679035 680180 D PFAM: alanine racemase domain protein; KEGG: sal:Sala_3175 threonine aldolase family protein; alanine racemase domain-containing protein 679035..680180 Parvibaculum lavamentivorans DS-1 5456537 YP_001411895.1 CDS Plav_0615 NC_009719.1 680468 681640 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sme:SMb21148 putative oxidoreductase protein; oxidoreductase domain-containing protein complement(680468..681640) Parvibaculum lavamentivorans DS-1 5453791 YP_001411896.1 CDS Plav_0616 NC_009719.1 681834 682988 D PFAM: phosphofructokinase; KEGG: rrs:RoseRS_1831 6-phosphofructokinase; 6-phosphofructokinase 681834..682988 Parvibaculum lavamentivorans DS-1 5453825 YP_001411897.1 CDS Plav_0617 NC_009719.1 683201 683644 R PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2555 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(683201..683644) Parvibaculum lavamentivorans DS-1 5455438 YP_001411898.1 CDS Plav_0618 NC_009719.1 683674 684768 R PFAM: aminoglycoside phosphotransferase; KEGG: hypothetical protein; aminoglycoside phosphotransferase complement(683674..684768) Parvibaculum lavamentivorans DS-1 5455233 YP_001411899.1 CDS Plav_0619 NC_009719.1 685047 686330 R TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: rpe:RPE_4612 phosphoribosylamine--glycine ligase; phosphoribosylamine--glycine ligase complement(685047..686330) Parvibaculum lavamentivorans DS-1 5453689 YP_001411900.1 CDS Plav_0620 NC_009719.1 686459 687892 D TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: rpa:RPA1161 putative exonuclease VII, large subunit OB-fold nucleic acid binding domain; exodeoxyribonuclease VII large subunit 686459..687892 Parvibaculum lavamentivorans DS-1 5456560 YP_001411901.1 CDS Plav_0621 NC_009719.1 687938 688156 D KEGG: rpa:RPA1160 hypothetical protein; hypothetical protein 687938..688156 Parvibaculum lavamentivorans DS-1 5455597 YP_001411902.1 CDS Plav_0622 NC_009719.1 688153 688995 D PFAM: peptidase M23B; KEGG: sbl:Sbal_2531 peptidase M23B; peptidase M23B 688153..688995 Parvibaculum lavamentivorans DS-1 5456845 YP_001411903.1 CDS Plav_0623 NC_009719.1 688999 689958 R PFAM: lipid A biosynthesis acyltransferase; KEGG: gbe:GbCGDNIH1_2243 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis acyltransferase complement(688999..689958) Parvibaculum lavamentivorans DS-1 5456545 YP_001411904.1 CDS Plav_0624 NC_009719.1 690010 691038 R TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; KEGG: rsq:Rsph17025_0060 tetraacyldisaccharide 4'-kinase; tetraacyldisaccharide 4'-kinase complement(690010..691038) Parvibaculum lavamentivorans DS-1 5455748 YP_001411905.1 CDS Plav_0625 NC_009719.1 691031 692338 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: mag:amb4092 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase complement(691031..692338) Parvibaculum lavamentivorans DS-1 5454098 YP_001411906.1 CDS Plav_0626 NC_009719.1 692355 693107 R PFAM: protein of unknown function DUF374; KEGG: mag:amb4091 hypothetical protein; hypothetical protein complement(692355..693107) Parvibaculum lavamentivorans DS-1 5453587 YP_001411907.1 CDS Plav_0627 NC_009719.1 693114 694997 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter, HlyB/MsbA family; K06147 ATP-binding cassette, subfamily B, bacterial; ABC transporter-like protein complement(693114..694997) Parvibaculum lavamentivorans DS-1 5455692 YP_001411908.1 CDS Plav_0628 NC_009719.1 695132 695650 R PFAM: TspO/MBR family protein; KEGG: acr:Acry_0012 TspO and MBR like protein; TspO and MBR-like protein complement(695132..695650) Parvibaculum lavamentivorans DS-1 5456370 YP_001411909.1 CDS Plav_0629 NC_009719.1 695640 695879 R KEGG: bra:BRADO6098 hypothetical protein; hypothetical protein complement(695640..695879) Parvibaculum lavamentivorans DS-1 5456641 YP_001411910.1 CDS Plav_0630 NC_009719.1 695956 696762 R PFAM: inositol monophosphatase; KEGG: inositol monophosphatase family protein; inositol-phosphate phosphatase complement(695956..696762) Parvibaculum lavamentivorans DS-1 5453651 YP_001411911.1 CDS Plav_0631 NC_009719.1 696749 698155 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: nha:Nham_3182 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(696749..698155) Parvibaculum lavamentivorans DS-1 5455422 YP_001411912.1 CDS Plav_0632 NC_009719.1 698142 698546 R KEGG: hne:HNE_1363 hypothetical protein; hypothetical protein complement(698142..698546) Parvibaculum lavamentivorans DS-1 5454949 YP_001411913.1 CDS Plav_0633 NC_009719.1 698656 699174 D PFAM: Appr-1-p processing domain protein; KEGG: pde:Pden_3638 Appr-1-p processing domain protein; appr-1-p processing domain-containing protein 698656..699174 Parvibaculum lavamentivorans DS-1 5455599 YP_001411914.1 CDS Plav_0634 NC_009719.1 699177 699599 R PFAM: Class I peptide chain release factor; KEGG: rru:Rru_A0097 class I peptide chain release factor; class I peptide chain release factor complement(699177..699599) Parvibaculum lavamentivorans DS-1 5456126 YP_001411915.1 CDS Plav_0635 NC_009719.1 699721 700110 D KEGG: ava:Ava_4644 hypothetical protein; hypothetical protein 699721..700110 Parvibaculum lavamentivorans DS-1 5454239 YP_001411916.1 CDS Plav_0636 NC_009719.1 700110 700493 D KEGG: pen:PSEEN1046 transcriptional regulator; transcriptional regulator 700110..700493 Parvibaculum lavamentivorans DS-1 5455989 YP_001411917.1 CDS Plav_0637 NC_009719.1 700512 702038 R TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; UbiD family decarboxylase complement(700512..702038) Parvibaculum lavamentivorans DS-1 5453984 YP_001411918.1 CDS Plav_0638 NC_009719.1 702145 702840 D KEGG: ret:RHE_CH00896 hypothetical protein; hypothetical protein 702145..702840 Parvibaculum lavamentivorans DS-1 5455354 YP_001411919.1 CDS Plav_0639 NC_009719.1 702842 703630 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase complement(702842..703630) Parvibaculum lavamentivorans DS-1 5453935 YP_001411920.1 CDS Plav_0640 NC_009719.1 703767 704438 R KEGG: bmb:BruAb1_1869 hypothetical protein; hypothetical protein complement(703767..704438) Parvibaculum lavamentivorans DS-1 5454838 YP_001411921.1 CDS Plav_0641 NC_009719.1 704435 705373 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: mag:amb0832 FAD synthase; riboflavin biosynthesis protein RibF complement(704435..705373) Parvibaculum lavamentivorans DS-1 5454959 YP_001411922.1 CDS Plav_0642 NC_009719.1 705479 706351 R TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mlo:mlr8242 hypothetical protein; HAD family hydrolase complement(705479..706351) Parvibaculum lavamentivorans DS-1 5454017 YP_001411923.1 CDS Plav_0643 NC_009719.1 706635 707204 R TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein; KEGG: bra:BRADO6080 putative methyltransferase; putative methyltransferase complement(706635..707204) Parvibaculum lavamentivorans DS-1 5455407 YP_001411924.1 CDS Plav_0644 NC_009719.1 707179 708162 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rpb:RPB_1171 pseudouridine synthase, Rsu; RNA-binding S4 domain-containing protein complement(707179..708162) Parvibaculum lavamentivorans DS-1 5456906 YP_001411925.1 CDS Plav_0645 NC_009719.1 708212 708706 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mes:Meso_0427 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 708212..708706 Parvibaculum lavamentivorans DS-1 5456846 YP_001411926.1 CDS Plav_0646 NC_009719.1 708835 710073 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 708835..710073 Parvibaculum lavamentivorans DS-1 5453630 YP_001411927.1 CDS Plav_0647 NC_009719.1 710164 710856 D PFAM: Glutathione S-transferase domain; KEGG: bmb:BruAb1_0852 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 710164..710856 Parvibaculum lavamentivorans DS-1 5456193 YP_001411928.1 CDS Plav_0648 NC_009719.1 710860 712845 R KEGG: bbt:BBta_3094 putative two-component sensor histidine kinase with a ATP-binding domain (C-term); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(710860..712845) Parvibaculum lavamentivorans DS-1 5456720 YP_001411929.1 CDS Plav_0649 NC_009719.1 712996 714066 R PFAM: aminoglycoside phosphotransferase; KEGG: reh:H16_A1099 predicted aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(712996..714066) Parvibaculum lavamentivorans DS-1 5453859 YP_001411930.1 CDS Plav_0650 NC_009719.1 714157 715176 R PFAM: fatty acid desaturase; KEGG: bja:blr4081 hypothetical protein; fatty acid desaturase complement(714157..715176) Parvibaculum lavamentivorans DS-1 5456009 YP_001411931.1 CDS Plav_0651 NC_009719.1 715173 715829 R PFAM: regulatory protein TetR; KEGG: maq:Maqu_3581 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(715173..715829) Parvibaculum lavamentivorans DS-1 5456530 YP_001411932.1 CDS Plav_0652 NC_009719.1 716313 717584 D PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aba:Acid345_3460 major facilitator superfamily (MFS) transporter; major facilitator superfamily transporter 716313..717584 Parvibaculum lavamentivorans DS-1 5454264 YP_001411933.1 CDS Plav_0653 NC_009719.1 717581 718603 R TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: rru:Rru_A0572 4-hydroxybenzoate polyprenyl transferase; 4-hydroxybenzoate polyprenyltransferase complement(717581..718603) Parvibaculum lavamentivorans DS-1 5455747 YP_001411934.1 CDS Plav_0654 NC_009719.1 718674 719168 R PFAM: NUDIX hydrolase; KEGG: sco:SCO5600 hypothetical protein; NUDIX hydrolase complement(718674..719168) Parvibaculum lavamentivorans DS-1 5453508 YP_001411935.1 CDS Plav_0655 NC_009719.1 719351 719872 D hypothetical protein 719351..719872 Parvibaculum lavamentivorans DS-1 5453853 YP_001411936.1 CDS Plav_0656 NC_009719.1 720153 720947 D PFAM: protein of unknown function DUF558; KEGG: mlo:mll6903 hypothetical protein; hypothetical protein 720153..720947 Parvibaculum lavamentivorans DS-1 5455325 YP_001411937.1 CDS Plav_0657 NC_009719.1 721071 721661 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: mlo:mll1286 probable NAD(P)H dehydrogenase; NAD(P)H dehydrogenase (quinone) 721071..721661 Parvibaculum lavamentivorans DS-1 5454328 YP_001411938.1 CDS Plav_0658 NC_009719.1 722114 723484 D TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GCS2; KEGG: rru:Rru_A0570 glutamate--cysteine ligase; glutamate--cysteine ligase 722114..723484 Parvibaculum lavamentivorans DS-1 5456651 YP_001411939.1 CDS Plav_0659 NC_009719.1 723694 724077 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bte:BTH_II0667 glyoxalase family protein family; glyoxalase/bleomycin resistance protein/dioxygenase 723694..724077 Parvibaculum lavamentivorans DS-1 5456213 YP_001411940.1 CDS Plav_0660 NC_009719.1 724135 724377 D TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bcn:Bcen_4816 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 724135..724377 Parvibaculum lavamentivorans DS-1 5456344 YP_001411941.1 CDS Plav_0661 NC_009719.1 724374 724784 D KEGG: rpc:RPC_3693 PilT protein-like; Pil-like protein 724374..724784 Parvibaculum lavamentivorans DS-1 5454702 YP_001411942.1 CDS Plav_0662 NC_009719.1 724785 725288 D KEGG: fal:FRAAL4218 putative DNA topology modulation protein FlaR; putative DNA topology modulation protein FlaR 724785..725288 Parvibaculum lavamentivorans DS-1 5454143 YP_001411943.1 CDS Plav_0663 NC_009719.1 725292 725804 R PFAM: DinB family protein; KEGG: rfr:Rfer_0154 DinB; DinB family protein complement(725292..725804) Parvibaculum lavamentivorans DS-1 5456471 YP_001411944.1 CDS Plav_0664 NC_009719.1 725969 726388 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: sdn:Sden_2391 cupin 2, conserved barrel; cupin 725969..726388 Parvibaculum lavamentivorans DS-1 5455141 YP_001411945.1 CDS Plav_0665 NC_009719.1 726385 727197 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mxa:MXAN_6479 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein complement(726385..727197) Parvibaculum lavamentivorans DS-1 5456119 YP_001411946.1 CDS Plav_0666 NC_009719.1 727245 728678 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: mes:Meso_0739 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(727245..728678) Parvibaculum lavamentivorans DS-1 5456410 YP_001411947.1 CDS Plav_0667 NC_009719.1 728753 729148 R hypothetical protein complement(728753..729148) Parvibaculum lavamentivorans DS-1 5453943 YP_001411948.1 CDS Plav_0668 NC_009719.1 729224 729610 D hypothetical protein 729224..729610 Parvibaculum lavamentivorans DS-1 5453918 YP_001411949.1 CDS Plav_0669 NC_009719.1 729613 730452 D TIGRFAM: Cytochrome c oxidase subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; KEGG: nha:Nham_3463 cytochrome-c oxidase; cytochrome c oxidase subunit II 729613..730452 Parvibaculum lavamentivorans DS-1 5456762 YP_001411950.1 CDS Plav_0670 NC_009719.1 730509 732116 D TIGRFAM: Cytochrome c oxidase subunit I type; PFAM: cytochrome c oxidase subunit I; KEGG: rpb:RPB_4587 cytochrome-c oxidase; cytochrome c oxidase subunit I type 730509..732116 Parvibaculum lavamentivorans DS-1 5456777 YP_001411951.1 CDS Plav_0671 NC_009719.1 732192 733148 D TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: rle:RL1023 putative protoheme IX farnesyltransferase (heme o synthase); protoheme IX farnesyltransferase 732192..733148 Parvibaculum lavamentivorans DS-1 5456375 YP_001411952.1 CDS Plav_0672 NC_009719.1 733156 733338 D hypothetical protein 733156..733338 Parvibaculum lavamentivorans DS-1 5455606 YP_001411953.1 CDS Plav_0673 NC_009719.1 733462 734301 D PFAM: cytochrome c oxidase subunit III; KEGG: sme:SMc00013 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 733462..734301 Parvibaculum lavamentivorans DS-1 5455151 YP_001411954.1 CDS Plav_0674 NC_009719.1 734382 734768 D PFAM: protein of unknown function DUF983; KEGG: atc:AGR_C_1409 hypothetical protein; hypothetical protein 734382..734768 Parvibaculum lavamentivorans DS-1 5455373 YP_001411955.1 CDS Plav_0675 NC_009719.1 734765 735505 D PFAM: Surfeit locus 1 family protein; KEGG: bra:BRADO1723 putative SURF1 family protein; surfeit locus 1 family protein 734765..735505 Parvibaculum lavamentivorans DS-1 5453636 YP_001411956.1 CDS Plav_0676 NC_009719.1 735502 736995 D PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: rru:Rru_A3232 thermostable carboxypeptidase 1; carboxypeptidase Taq 735502..736995 Parvibaculum lavamentivorans DS-1 5454105 YP_001411957.1 CDS Plav_0677 NC_009719.1 737109 738512 D TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rsh:Rsph17029_0480 threonine synthase; threonine synthase 737109..738512 Parvibaculum lavamentivorans DS-1 5453878 YP_001411958.1 CDS Plav_0678 NC_009719.1 738577 739851 D PFAM: peptidase M16 domain protein; KEGG: sil:SPO3070 peptidase, M16 family; peptidase M16 domain-containing protein 738577..739851 Parvibaculum lavamentivorans DS-1 5455482 YP_001411959.1 CDS Plav_0679 NC_009719.1 739911 740498 D PFAM: GCN5-related N-acetyltransferase; KEGG: nwi:Nwi_0231 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 739911..740498 Parvibaculum lavamentivorans DS-1 5455423 YP_001411960.1 CDS Plav_0680 NC_009719.1 740518 743493 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: rpb:RPB_4495 diguanylate cyclase/phosphodiesterase; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 740518..743493 Parvibaculum lavamentivorans DS-1 5454693 YP_001411961.1 CDS Plav_0681 NC_009719.1 743496 744113 R PFAM: protein of unknown function DUF179; KEGG: bja:blr1492 putative transcriptional regulator; hypothetical protein complement(743496..744113) Parvibaculum lavamentivorans DS-1 5456766 YP_001411962.1 CDS Plav_0682 NC_009719.1 744252 745124 D KEGG: sil:SPO0295 hypothetical protein; hypothetical protein 744252..745124 Parvibaculum lavamentivorans DS-1 5454859 YP_001411963.1 CDS Plav_0683 NC_009719.1 745229 745717 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: AhpC/TSA family protein; redoxin domain-containing protein 745229..745717 Parvibaculum lavamentivorans DS-1 5455182 YP_001411964.1 CDS Plav_0684 NC_009719.1 745763 746215 R PFAM: ribonuclease H; KEGG: bra:BRADO6586 ribonuclease H (RNase H); ribonuclease H complement(745763..746215) Parvibaculum lavamentivorans DS-1 5455596 YP_001411965.1 CDS Plav_0685 NC_009719.1 746212 747177 R TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase; KEGG: sme:SMc00017 putative homoserine kinase protein; homoserine kinase complement(746212..747177) Parvibaculum lavamentivorans DS-1 5456985 YP_001411966.1 CDS Plav_0686 NC_009719.1 747189 748145 R TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; KEGG: mmr:Mmar10_2215 hydroxymethylbutenyl pyrophosphate reductase; hydroxymethylbutenyl pyrophosphate reductase complement(747189..748145) Parvibaculum lavamentivorans DS-1 5454136 YP_001411967.1 CDS Plav_0687 NC_009719.1 748445 749059 D KEGG: rru:Rru_A3052 hypothetical protein; hypothetical protein 748445..749059 Parvibaculum lavamentivorans DS-1 5455636 YP_001411968.1 CDS Plav_0688 NC_009719.1 749450 750592 D TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mag:amb0766 glycine cleavage system T protein; glycine cleavage system T protein 749450..750592 Parvibaculum lavamentivorans DS-1 5454814 YP_001411969.1 CDS Plav_0689 NC_009719.1 750626 751003 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 750626..751003 Parvibaculum lavamentivorans DS-1 5456430 YP_001411970.1 CDS Plav_0690 NC_009719.1 751029 752375 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 751029..752375 Parvibaculum lavamentivorans DS-1 5455940 YP_001411971.1 CDS Plav_0691 NC_009719.1 752376 753956 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 752376..753956 Parvibaculum lavamentivorans DS-1 5455714 YP_001411972.1 CDS Plav_0692 NC_009719.1 753958 754521 D PFAM: protein of unknown function DUF925; KEGG: bja:bll1166 hypothetical protein; hypothetical protein 753958..754521 Parvibaculum lavamentivorans DS-1 5455230 YP_001411973.1 CDS Plav_0693 NC_009719.1 754518 755300 R PFAM: dienelactone hydrolase; KEGG: mxa:MXAN_1666 hypothetical protein; dienelactone hydrolase complement(754518..755300) Parvibaculum lavamentivorans DS-1 5456091 YP_001411974.1 CDS Plav_0694 NC_009719.1 755420 755905 R PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mag:amb3996 ATP synthase B chain precursor; H+transporting two-sector ATPase subunit B/B' complement(755420..755905) Parvibaculum lavamentivorans DS-1 5455678 YP_001411975.1 CDS Plav_0695 NC_009719.1 755924 756487 R PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mes:Meso_0698 H+-transporting two-sector ATPase, B/B' subunit; H+transporting two-sector ATPase subunit B/B' complement(755924..756487) Parvibaculum lavamentivorans DS-1 5455189 YP_001411976.1 CDS Plav_0696 NC_009719.1 756561 756785 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(756561..756785) Parvibaculum lavamentivorans DS-1 5456431 YP_001411977.1 CDS Plav_0697 NC_009719.1 756881 757663 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(756881..757663) Parvibaculum lavamentivorans DS-1 5454593 YP_001411978.1 CDS Plav_0698 NC_009719.1 757679 758104 R KEGG: mag:amb3992 ATP synthase protein I; hypothetical protein complement(757679..758104) Parvibaculum lavamentivorans DS-1 5456819 YP_001411979.1 CDS Plav_0699 NC_009719.1 758363 761824 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: mes:Meso_0768 chromosome segregation protein SMC; chromosome segregation protein SMC complement(758363..761824) Parvibaculum lavamentivorans DS-1 5456003 YP_001411980.1 CDS Plav_0700 NC_009719.1 761898 762629 R PFAM: DSBA oxidoreductase; KEGG: bmb:BruAb1_0518 twin-arginine translocation signal domain protein; DSBA oxidoreductase complement(761898..762629) Parvibaculum lavamentivorans DS-1 5455784 YP_001411981.1 CDS Plav_0701 NC_009719.1 762662 764509 D TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: mag:amb3984 A/G-specific DNA glycosylase; A/G-specific adenine glycosylase 762662..764509 Parvibaculum lavamentivorans DS-1 5454570 YP_001411982.1 CDS Plav_0702 NC_009719.1 764710 765813 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: modification methylase CcrMI; DNA methylase N-4/N-6 domain-containing protein complement(764710..765813) Parvibaculum lavamentivorans DS-1 5454912 YP_001411983.1 CDS Plav_0703 NC_009719.1 765871 766680 R PFAM: ribonuclease HII/HIII; KEGG: swi:Swit_4574 ribonuclease H; ribonuclease H complement(765871..766680) Parvibaculum lavamentivorans DS-1 5455960 YP_001411984.1 CDS Plav_0704 NC_009719.1 766718 767548 R PFAM: alpha/beta hydrolase fold; KEGG: hne:HNE_3365 chloride peroxidase; alpha/beta hydrolase fold protein complement(766718..767548) Parvibaculum lavamentivorans DS-1 5455527 YP_001411985.1 CDS Plav_0705 NC_009719.1 767794 768264 D PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: hne:HNE_3364 transcriptional regulator, MarR family; MarR family transcriptional regulator 767794..768264 Parvibaculum lavamentivorans DS-1 5454700 YP_001411986.1 CDS Plav_0706 NC_009719.1 768342 768647 R PFAM: Excinuclease ABC C subunit domain protein; KEGG: eli:ELI_03135 hypothetical protein; excinuclease ABC subunit C complement(768342..768647) Parvibaculum lavamentivorans DS-1 5454572 YP_001411987.1 CDS Plav_0707 NC_009719.1 768698 769963 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: nha:Nham_3222 radical SAM; radical SAM domain-containing protein complement(768698..769963) Parvibaculum lavamentivorans DS-1 5453631 YP_001411988.1 CDS Plav_0708 NC_009719.1 770094 770801 D PFAM: glycosyl transferase family 2; KEGG: bbt:BBta_3382 putative glycosyl transferase, group 2 family protein; glycosyl transferase family protein 770094..770801 Parvibaculum lavamentivorans DS-1 5454075 YP_001411989.1 CDS Plav_0709 NC_009719.1 770807 771406 D KEGG: rde:RD1_0184 hypothetical protein; hypothetical protein 770807..771406 Parvibaculum lavamentivorans DS-1 5454254 YP_001411990.1 CDS Plav_0710 NC_009719.1 771481 771750 D TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: pde:Pden_3830 putative transcriptional regulators, CopG/Arc/MetJ family; CopG/Arc/MetJ family transcriptional regulator 771481..771750 Parvibaculum lavamentivorans DS-1 5453855 YP_001411991.1 CDS Plav_0711 NC_009719.1 771747 772049 D PFAM: plasmid stabilization system; KEGG: mbo:Mb1994c hypothetical protein; plasmid stabilization system protein 771747..772049 Parvibaculum lavamentivorans DS-1 5455385 YP_001411992.1 CDS mscL NC_009719.1 772078 772506 R homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(772078..772506) Parvibaculum lavamentivorans DS-1 5455553 YP_001411993.1 CDS Plav_0713 NC_009719.1 772587 773126 R TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: nwi:Nwi_2601 molybdopterin biosynthesis protein B; molybdenum cofactor biosynthesis protein B complement(772587..773126) Parvibaculum lavamentivorans DS-1 5453472 YP_001411994.1 CDS Plav_0714 NC_009719.1 773348 776557 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: mpt:Mpe_A0868 AcrB/AcrD/AcrF family protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(773348..776557) Parvibaculum lavamentivorans DS-1 5454188 YP_001411995.1 CDS Plav_0715 NC_009719.1 776708 777922 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_1362 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(776708..777922) Parvibaculum lavamentivorans DS-1 5454123 YP_001411996.1 CDS Plav_0716 NC_009719.1 778124 778711 D PFAM: regulatory protein TetR; KEGG: rpa:RPA3021 probable transcriptional regulator TetR family; TetR family transcriptional regulator 778124..778711 Parvibaculum lavamentivorans DS-1 5456093 YP_001411997.1 CDS Plav_0717 NC_009719.1 778715 780565 R PFAM: Lytic transglycosylase catalytic; KEGG: mag:amb4398 soluble lytic murein transglycosylase and related regulatory protein; lytic transglycosylase catalytic subunit complement(778715..780565) Parvibaculum lavamentivorans DS-1 5456416 YP_001411998.1 CDS Plav_0718 NC_009719.1 780642 781514 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mlo:mll7705 putative DNA polymerase bacteriophage-type; phage SPO1 DNA polymerase-like protein complement(780642..781514) Parvibaculum lavamentivorans DS-1 5456881 YP_001411999.1 CDS Plav_0719 NC_009719.1 781763 783436 D PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: electrotransfer ubiquinone oxidoreductase, putative; electron-transferring-flavoprotein dehydrogenase 781763..783436 Parvibaculum lavamentivorans DS-1 5453433 YP_001412000.1 CDS Plav_0720 NC_009719.1 783574 785361 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_4357 tetratricopeptide TPR_2; hypothetical protein 783574..785361 Parvibaculum lavamentivorans DS-1 5455852 YP_001412001.1 CDS Plav_0721 NC_009719.1 785366 786238 D TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: mag:amb4435 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 785366..786238 Parvibaculum lavamentivorans DS-1 5454644 YP_001412002.1 CDS Plav_0722 NC_009719.1 786235 787254 R PFAM: Polyprenyl synthetase; KEGG: rpb:RPB_1088 farnesyltranstransferase; polyprenyl synthetase complement(786235..787254) Parvibaculum lavamentivorans DS-1 5456608 YP_001412003.1 CDS Plav_0723 NC_009719.1 787479 787694 D KEGG: pde:Pden_2030 hypothetical protein; hypothetical protein 787479..787694 Parvibaculum lavamentivorans DS-1 5457046 YP_001412004.1 CDS Plav_0724 NC_009719.1 787691 788473 D KEGG: mag:amb2163 predicted O-methyltransferase; O-methyltransferase 787691..788473 Parvibaculum lavamentivorans DS-1 5456620 YP_001412005.1 CDS Plav_0725 NC_009719.1 788516 789418 D PFAM: peptidase S49; KEGG: rpa:RPA1043 possible protease SohB; peptidase S49 788516..789418 Parvibaculum lavamentivorans DS-1 5454014 YP_001412006.1 CDS Plav_0726 NC_009719.1 789466 789666 D hypothetical protein 789466..789666 Parvibaculum lavamentivorans DS-1 5456048 YP_001412007.1 CDS glyQ NC_009719.1 789831 790724 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 789831..790724 Parvibaculum lavamentivorans DS-1 5453782 YP_001412008.1 CDS Plav_0728 NC_009719.1 790721 792946 D TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: rpe:RPE_4409 glycine--tRNA ligase; glycyl-tRNA synthetase subunit beta 790721..792946 Parvibaculum lavamentivorans DS-1 5455239 YP_001412009.1 CDS Plav_0729 NC_009719.1 793012 795780 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 793012..795780 Parvibaculum lavamentivorans DS-1 5457011 YP_001412010.1 CDS Plav_0730 NC_009719.1 796241 796978 D PFAM: cell wall hydrolase SleB; KEGG: hne:HNE_0687 putative hydrolase domain protein; cell wall hydrolase SleB 796241..796978 Parvibaculum lavamentivorans DS-1 5456467 YP_001412011.1 CDS Plav_0731 NC_009719.1 797004 797828 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mav:MAV_2820 short chain dehydrogenase; short chain dehydrogenase complement(797004..797828) Parvibaculum lavamentivorans DS-1 5456241 YP_001412012.1 CDS Plav_0732 NC_009719.1 797900 798769 R TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; KEGG: gbe:GbCGDNIH1_0642 nicotinate-nucleotide pyrophosphorylase (carboxylating); nicotinate-nucleotide pyrophosphorylase complement(797900..798769) Parvibaculum lavamentivorans DS-1 5456155 YP_001412013.1 CDS Plav_0733 NC_009719.1 798766 800379 R TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rpc:RPC_4339 L-aspartate oxidase; L-aspartate oxidase complement(798766..800379) Parvibaculum lavamentivorans DS-1 5454026 YP_001412014.1 CDS Plav_0734 NC_009719.1 800407 801483 R TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: rpd:RPD_1229 quinolinate synthetase complex, A subunit; quinolinate synthetase complex subunit A complement(800407..801483) Parvibaculum lavamentivorans DS-1 5454481 YP_001412015.1 CDS Plav_0735 NC_009719.1 801671 802045 R hypothetical protein complement(801671..802045) Parvibaculum lavamentivorans DS-1 5455696 YP_001412016.1 CDS Plav_0736 NC_009719.1 802061 803116 R KEGG: rpe:RPE_4395 hypothetical protein; hypothetical protein complement(802061..803116) Parvibaculum lavamentivorans DS-1 5454734 YP_001412017.1 CDS Plav_0737 NC_009719.1 803124 803672 R KEGG: bbt:BBta_2370 hypothetical protein; hypothetical protein complement(803124..803672) Parvibaculum lavamentivorans DS-1 5454792 YP_001412018.1 CDS Plav_0738 NC_009719.1 803843 804655 D PFAM: dienelactone hydrolase; KEGG: mmr:Mmar10_2929 dienelactone hydrolase; dienelactone hydrolase 803843..804655 Parvibaculum lavamentivorans DS-1 5453958 YP_001412019.1 CDS Plav_0739 NC_009719.1 804659 805270 R KEGG: bov:BOV_0659 hypothetical protein; hypothetical protein complement(804659..805270) Parvibaculum lavamentivorans DS-1 5455642 YP_001412020.1 CDS Plav_0740 NC_009719.1 805429 807960 D PFAM: peptidase S16 lon domain protein; KEGG: rxy:Rxyl_1929 ATP-dependent protease, putative; peptidase S16 lon domain-containing protein 805429..807960 Parvibaculum lavamentivorans DS-1 5455206 YP_001412021.1 CDS Plav_0741 NC_009719.1 807960 808832 D KEGG: rxy:Rxyl_1928 hypothetical protein; hypothetical protein 807960..808832 Parvibaculum lavamentivorans DS-1 5456448 YP_001412022.1 CDS Plav_0742 NC_009719.1 808834 809694 D PFAM: UspA domain protein; KEGG: mag:amb1529 universal stress protein UspA and related nucleotide-binding protein; UspA domain-containing protein 808834..809694 Parvibaculum lavamentivorans DS-1 5454142 YP_001412023.1 CDS Plav_0743 NC_009719.1 809725 810096 D KEGG: mmr:Mmar10_0797 hypothetical protein; hypothetical protein 809725..810096 Parvibaculum lavamentivorans DS-1 5455143 YP_001412024.1 CDS Plav_0744 NC_009719.1 810127 811251 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(810127..811251) Parvibaculum lavamentivorans DS-1 5456653 YP_001412025.1 CDS Plav_0745 NC_009719.1 811415 812086 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sat:SYN_03000 pyridoxamine phosphate oxidase; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 811415..812086 Parvibaculum lavamentivorans DS-1 5455502 YP_001412026.1 CDS Plav_0746 NC_009719.1 812087 812758 R PFAM: protein of unknown function DUF583; KEGG: ajs:Ajs_0600 protein of unknown function DUF583; hypothetical protein complement(812087..812758) Parvibaculum lavamentivorans DS-1 5455275 YP_001412027.1 CDS Plav_0747 NC_009719.1 812895 813491 R TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; KEGG: rpc:RPC_4332 DNA-3-methyladenine glycosylase I; DNA-3-methyladenine glycosylase I complement(812895..813491) Parvibaculum lavamentivorans DS-1 5455335 YP_001412028.1 CDS Plav_0748 NC_009719.1 813481 814431 R PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: rpa:RPA1068 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) complement(813481..814431) Parvibaculum lavamentivorans DS-1 5455823 YP_001412029.1 CDS Plav_0749 NC_009719.1 814534 815529 D PFAM: glycosyl transferase family 9; KEGG: rru:Rru_A2230 glycosyl transferase, family 9; glycosyl transferase family protein 814534..815529 Parvibaculum lavamentivorans DS-1 5454228 YP_001412030.1 CDS Plav_0750 NC_009719.1 815526 816863 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 815526..816863 Parvibaculum lavamentivorans DS-1 5454489 YP_001412031.1 CDS Plav_0751 NC_009719.1 816967 817239 R PFAM: Usg family protein; KEGG: acr:Acry_2505 Usg family protein; Usg family protein complement(816967..817239) Parvibaculum lavamentivorans DS-1 5455691 YP_001412032.1 CDS Plav_0752 NC_009719.1 817520 818512 D TIGRFAM: Quinone oxidoreductase putative YhdH/YhfP; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_2364 putative dehydrogenase, NAD(P)-binding domain and GroES-like domain; quinone oxidoreductase putative YhdH/YhfP 817520..818512 Parvibaculum lavamentivorans DS-1 5455452 YP_001412033.1 CDS Plav_0753 NC_009719.1 818531 820387 D PFAM: AMP-dependent synthetase and ligase; KEGG: rpe:RPE_3824 AMP-dependent synthetase and ligase; acyl-CoA synthetase 818531..820387 Parvibaculum lavamentivorans DS-1 5455173 YP_001412034.1 CDS Plav_0754 NC_009719.1 820403 821044 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rrs:RoseRS_1054 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 820403..821044 Parvibaculum lavamentivorans DS-1 5454240 YP_001412035.1 CDS Plav_0755 NC_009719.1 821086 822630 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 821086..822630 Parvibaculum lavamentivorans DS-1 5454889 YP_001412036.1 CDS Plav_0756 NC_009719.1 822723 823019 R KEGG: bbt:BBta_2379 hypothetical protein; hypothetical protein complement(822723..823019) Parvibaculum lavamentivorans DS-1 5456162 YP_001412037.1 CDS Plav_0757 NC_009719.1 823211 823591 R KEGG: rpc:RPC_4328 hypothetical protein; hypothetical protein complement(823211..823591) Parvibaculum lavamentivorans DS-1 5455137 YP_001412038.1 CDS Plav_0758 NC_009719.1 823718 824713 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: hypothetical protein; 2-nitropropane dioxygenase complement(823718..824713) Parvibaculum lavamentivorans DS-1 5456269 YP_001412039.1 CDS Plav_0759 NC_009719.1 824802 825578 D KEGG: rru:Rru_A0255 hypothetical protein; hypothetical protein 824802..825578 Parvibaculum lavamentivorans DS-1 5456262 YP_001412040.1 CDS Plav_0760 NC_009719.1 825581 826744 D PFAM: glucose sorbosone dehydrogenase; KEGG: pfo:Pfl_2615 hypothetical protein; glucose sorbosone dehydrogenase 825581..826744 Parvibaculum lavamentivorans DS-1 5455126 YP_001412041.1 CDS Plav_0761 NC_009719.1 826977 827438 R KEGG: rle:RL3079 putative transmembrane protein; putative transmembrane protein complement(826977..827438) Parvibaculum lavamentivorans DS-1 5455218 YP_001412042.1 CDS Plav_0762 NC_009719.1 827484 828686 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: swi:Swit_4638 FMN-dependent alpha-hydroxy acid dehydrogenase; L-lactate dehydrogenase (cytochrome) complement(827484..828686) Parvibaculum lavamentivorans DS-1 5455718 YP_001412043.1 CDS Plav_0763 NC_009719.1 828766 829236 R PFAM: regulatory protein MarR; KEGG: mva:Mvan_6049 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(828766..829236) Parvibaculum lavamentivorans DS-1 5455815 YP_001412044.1 CDS Plav_0764 NC_009719.1 829247 830029 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: 2-deoxy-D-gluconate 3-dehydrogenase; short-chain dehydrogenase/reductase SDR complement(829247..830029) Parvibaculum lavamentivorans DS-1 5456170 YP_001412045.1 CDS Plav_0765 NC_009719.1 830112 830477 R hypothetical protein complement(830112..830477) Parvibaculum lavamentivorans DS-1 5455902 YP_001412046.1 CDS Plav_0766 NC_009719.1 830577 831059 R PFAM: ferric-uptake regulator; KEGG: maq:Maqu_3775 ferric uptake regulator, Fur family; ferric uptake regulator family protein complement(830577..831059) Parvibaculum lavamentivorans DS-1 5455383 YP_001412047.1 CDS Plav_0767 NC_009719.1 831144 831878 D PFAM: protein of unknown function DUF159; KEGG: rpe:RPE_4383 protein of unknown function DUF159; hypothetical protein 831144..831878 Parvibaculum lavamentivorans DS-1 5456592 YP_001412048.1 CDS Plav_0768 NC_009719.1 832040 832507 R PFAM: GCN5-related N-acetyltransferase; KEGG: bra:BRADO2056 putative acetyltransferase; N-acetyltransferase GCN5 complement(832040..832507) Parvibaculum lavamentivorans DS-1 5455602 YP_001412049.1 CDS Plav_0769 NC_009719.1 832627 833970 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ana:alr5216 probable hemolysin; hypothetical protein 832627..833970 Parvibaculum lavamentivorans DS-1 5456532 YP_001412050.1 CDS Plav_0770 NC_009719.1 834170 835585 R PFAM: FAD linked oxidase domain protein; KEGG: rru:Rru_A0442 FAD linked oxidase-like; FAD linked oxidase domain-containing protein complement(834170..835585) Parvibaculum lavamentivorans DS-1 5456922 YP_001412051.1 CDS Plav_0771 NC_009719.1 835661 835948 R PFAM: Excinuclease ABC C subunit domain protein; KEGG: mmr:Mmar10_2352 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C complement(835661..835948) Parvibaculum lavamentivorans DS-1 5454327 YP_001412052.1 CDS Plav_0772 NC_009719.1 836181 837476 R PFAM: beta-lactamase; KEGG: mtc:MT1771 penicillin-binding protein 4; beta-lactamase complement(836181..837476) Parvibaculum lavamentivorans DS-1 5456664 YP_001412053.1 CDS Plav_0773 NC_009719.1 837954 838823 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mul:MUL_2390 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 837954..838823 Parvibaculum lavamentivorans DS-1 5455316 YP_001412054.1 CDS Plav_0774 NC_009719.1 838820 839782 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: mag:amb3712 putative translation factor; Sua5/YciO/YrdC/YwlC family protein complement(838820..839782) Parvibaculum lavamentivorans DS-1 5454747 YP_001412055.1 CDS Plav_0775 NC_009719.1 839871 841631 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bms:BR0412 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 839871..841631 Parvibaculum lavamentivorans DS-1 5453762 YP_001412056.1 CDS Plav_0776 NC_009719.1 841631 843019 D PFAM: sodium/glutamate symporter; KEGG: hha:Hhal_2269 sodium/glutamate symporter; sodium/glutamate symporter 841631..843019 Parvibaculum lavamentivorans DS-1 5456531 YP_001412057.1 CDS Plav_0777 NC_009719.1 843125 844183 D PFAM: beta-lactamase domain protein; KEGG: metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 843125..844183 Parvibaculum lavamentivorans DS-1 5453581 YP_001412058.1 CDS Plav_0778 NC_009719.1 844229 845158 D PFAM: histone deacetylase superfamily; KEGG: mca:MCA2486 histone deacetylase/AcuC/AphA family protein; histone deacetylase superfamily protein 844229..845158 Parvibaculum lavamentivorans DS-1 5454175 YP_001412059.1 CDS Plav_0779 NC_009719.1 845196 845456 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: pde:Pden_0398 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 845196..845456 Parvibaculum lavamentivorans DS-1 5455635 YP_001412060.1 CDS Plav_0780 NC_009719.1 845473 846381 D PFAM: Polyprenyl synthetase; KEGG: mag:amb2903 geranylgeranyl pyrophosphate synthase; polyprenyl synthetase 845473..846381 Parvibaculum lavamentivorans DS-1 5453492 YP_001412061.1 CDS Plav_0781 NC_009719.1 846432 848384 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 846432..848384 Parvibaculum lavamentivorans DS-1 5453610 YP_001412062.1 CDS Plav_0782 NC_009719.1 848389 849132 D TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: acr:Acry_2652 hemolysin A; hemolysin A 848389..849132 Parvibaculum lavamentivorans DS-1 5455319 YP_001412063.1 CDS Plav_0783 NC_009719.1 849122 850369 D KEGG: sil:SPO0029 23S rRNA (uracil-5-)-methyltransferase RumA; 23S rRNA (uracil-5-)-methyltransferase RumA 849122..850369 Parvibaculum lavamentivorans DS-1 5453794 YP_001412064.1 CDS Plav_0784 NC_009719.1 850380 850889 R hypothetical protein complement(850380..850889) Parvibaculum lavamentivorans DS-1 5455577 YP_001412065.1 CDS Plav_0785 NC_009719.1 850882 851979 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(850882..851979) Parvibaculum lavamentivorans DS-1 5456810 YP_001412066.1 CDS Plav_0786 NC_009719.1 852044 852883 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpe:RPE_4591 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(852044..852883) Parvibaculum lavamentivorans DS-1 5455653 YP_001412067.1 CDS Plav_0787 NC_009719.1 853013 853891 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: bbt:BBta_7804 putative heat shock protein-DnaJ-like protein; chaperone DnaJ domain-containing protein complement(853013..853891) Parvibaculum lavamentivorans DS-1 5454420 YP_001412068.1 CDS Plav_0788 NC_009719.1 853960 854664 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat; Sel1 domain-containing protein complement(853960..854664) Parvibaculum lavamentivorans DS-1 5453758 YP_001412069.1 CDS Plav_0789 NC_009719.1 854694 855182 R PFAM: 17 kDa surface antigen; KEGG: rbe:RBE_1424 17 kD surface antigen precursor; 17 kDa surface antigen complement(854694..855182) Parvibaculum lavamentivorans DS-1 5455320 YP_001412070.1 CDS Plav_0790 NC_009719.1 855332 855958 D TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mmr:Mmar10_0857 pyridoxamine 5'-phosphate oxidase; pyridoxamine 5'-phosphate oxidase 855332..855958 Parvibaculum lavamentivorans DS-1 5453421 YP_001412071.1 CDS Plav_0791 NC_009719.1 856014 856952 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: noc:Noc_2871 cation efflux protein; cation diffusion facilitator family transporter 856014..856952 Parvibaculum lavamentivorans DS-1 5453764 YP_001412072.1 CDS Plav_0792 NC_009719.1 856965 858551 D KEGG: hypothetical protein; hypothetical protein 856965..858551 Parvibaculum lavamentivorans DS-1 5453761 YP_001412073.1 CDS Plav_0793 NC_009719.1 858635 858895 D KEGG: bam:Bamb_2020 hypothetical protein; hypothetical protein 858635..858895 Parvibaculum lavamentivorans DS-1 5455917 YP_001412074.1 CDS Plav_0794 NC_009719.1 858908 859432 D KEGG: rme:Rmet_1467 prophage CP4-57 regulatory; prophage CP4-57 regulatory 858908..859432 Parvibaculum lavamentivorans DS-1 5455905 YP_001412075.1 CDS Plav_0795 NC_009719.1 859483 860238 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bja:bll2623 short-chain alcohol dehydrogenase; short-chain dehydrogenase/reductase SDR 859483..860238 Parvibaculum lavamentivorans DS-1 5454059 YP_001412076.1 CDS Plav_0796 NC_009719.1 860405 860827 R KEGG: sus:Acid_2771 hypothetical protein; hypothetical protein complement(860405..860827) Parvibaculum lavamentivorans DS-1 5454900 YP_001412077.1 CDS Plav_0797 NC_009719.1 860827 862212 R PFAM: aminotransferase class-III; KEGG: ret:RHE_CH02145 probable adenosylmethionine--8-amino-7-oxononanoate aminotransferaseprotein; class III aminotransferase complement(860827..862212) Parvibaculum lavamentivorans DS-1 5453447 YP_001412078.1 CDS Plav_0798 NC_009719.1 862495 863952 R PFAM: Amidase; KEGG: bja:bll3874 putative amidase; amidase complement(862495..863952) Parvibaculum lavamentivorans DS-1 5455759 YP_001412079.1 CDS Plav_0799 NC_009719.1 864152 865792 D activates fatty acids by binding to coenzyme A; putative acyl-CoA synthetase 864152..865792 Parvibaculum lavamentivorans DS-1 5456313 YP_001412080.1 CDS Plav_0800 NC_009719.1 865865 866614 D KEGG: eba:ebA2569 hypothetical protein; hypothetical protein 865865..866614 Parvibaculum lavamentivorans DS-1 5455844 YP_001412081.1 CDS Plav_0801 NC_009719.1 866681 867586 R PFAM: beta-lactamase domain protein; KEGG: mmr:Mmar10_0859 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(866681..867586) Parvibaculum lavamentivorans DS-1 5456907 YP_001412082.1 CDS Plav_0802 NC_009719.1 867646 868128 R PFAM: regulatory protein MarR; KEGG: ret:RHE_CH03358 probable transcriptional regulator protein, MarR family; MarR family transcriptional regulator complement(867646..868128) Parvibaculum lavamentivorans DS-1 5455330 YP_001412083.1 CDS Plav_0803 NC_009719.1 868310 868627 R hypothetical protein complement(868310..868627) Parvibaculum lavamentivorans DS-1 5456894 YP_001412084.1 CDS Plav_0804 NC_009719.1 868765 870315 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(868765..870315) Parvibaculum lavamentivorans DS-1 5455450 YP_001412085.1 CDS Plav_0805 NC_009719.1 870570 870767 D hypothetical protein 870570..870767 Parvibaculum lavamentivorans DS-1 5455923 YP_001412086.1 CDS Plav_0806 NC_009719.1 870858 872093 R PFAM: aminotransferase class V; Pyridoxal-dependent decarboxylase; KEGG: eli:ELI_00260 putative sphingosine-1-phosphate lyase; pyridoxal-dependent decarboxylase complement(870858..872093) Parvibaculum lavamentivorans DS-1 5456759 YP_001412087.1 CDS Plav_0807 NC_009719.1 872148 872684 R PFAM: nuclear export factor GLE1; KEGG: atc:AGR_C_2707 hypothetical protein; nuclear export factor GLE1 complement(872148..872684) Parvibaculum lavamentivorans DS-1 5454813 YP_001412088.1 CDS Plav_0808 NC_009719.1 872696 874840 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rme:Rmet_4565 TonB-dependent receptor; TonB-dependent receptor complement(872696..874840) Parvibaculum lavamentivorans DS-1 5456336 YP_001412089.1 CDS Plav_0809 NC_009719.1 874924 875319 R hypothetical protein complement(874924..875319) Parvibaculum lavamentivorans DS-1 5456311 YP_001412090.1 CDS Plav_0810 NC_009719.1 875390 876199 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fal:FRAAL2628 putative enoyl-CoA hydratase/isomerase, involved in phenylacetic acid degradation; enoyl-CoA hydratase/isomerase complement(875390..876199) Parvibaculum lavamentivorans DS-1 5454122 YP_001412091.1 CDS Plav_0811 NC_009719.1 876313 877158 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA0416 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 876313..877158 Parvibaculum lavamentivorans DS-1 5456057 YP_001412092.1 CDS Plav_0812 NC_009719.1 877221 879200 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_0454 TonB-dependent receptor, putative; TonB-dependent receptor plug complement(877221..879200) Parvibaculum lavamentivorans DS-1 5456147 YP_001412093.1 CDS Plav_0813 NC_009719.1 880072 881703 D PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpd:RPD_1860 FAD dependent oxidoreductase; cyclohexanone monooxygenase 880072..881703 Parvibaculum lavamentivorans DS-1 5455732 YP_001412094.1 CDS Plav_0814 NC_009719.1 881706 882821 R PFAM: peptidase M20; peptidase M42 family protein; KEGG: mgm:Mmc1_0220 peptidase M42 family protein; peptidase M42 family protein complement(881706..882821) Parvibaculum lavamentivorans DS-1 5455666 YP_001412095.1 CDS Plav_0815 NC_009719.1 882845 884563 R PFAM: GCN5-related N-acetyltransferase; RimK domain protein ATP-grasp; KEGG: mes:Meso_2468 GCN5-related N-acetyltransferase; glutathione synthase complement(882845..884563) Parvibaculum lavamentivorans DS-1 5455765 YP_001412096.1 CDS Plav_0816 NC_009719.1 884598 886370 R TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: mes:Meso_2469 asparagine synthase (glutamine-hydrolyzing); asparagine synthase complement(884598..886370) Parvibaculum lavamentivorans DS-1 5456716 YP_001412097.1 CDS Plav_0817 NC_009719.1 886521 888410 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0835 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter-like protein complement(886521..888410) Parvibaculum lavamentivorans DS-1 5457021 YP_001412098.1 CDS Plav_0818 NC_009719.1 888407 890116 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_3848 ABC transporter related; ABC transporter-like protein complement(888407..890116) Parvibaculum lavamentivorans DS-1 5455498 YP_001412099.1 CDS Plav_0819 NC_009719.1 890484 891764 D KEGG: mes:Meso_2021 hypothetical protein; hypothetical protein 890484..891764 Parvibaculum lavamentivorans DS-1 5455386 YP_001412100.1 CDS Plav_0820 NC_009719.1 891769 892449 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mlo:mlr1575 hypothetical protein; type 11 methyltransferase 891769..892449 Parvibaculum lavamentivorans DS-1 5455380 YP_001412101.1 CDS Plav_0821 NC_009719.1 892434 893663 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: abo:ABO_0984 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(892434..893663) Parvibaculum lavamentivorans DS-1 5455367 YP_001412102.1 CDS Plav_0822 NC_009719.1 893738 894667 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_4581 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(893738..894667) Parvibaculum lavamentivorans DS-1 5455214 YP_001412103.1 CDS Plav_0823 NC_009719.1 894766 895788 D PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: rso:RSc3335 hypothetical protein; NAD-dependent epimerase/dehydratase 894766..895788 Parvibaculum lavamentivorans DS-1 5454133 YP_001412104.1 CDS Plav_0824 NC_009719.1 895954 896961 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: rso:RS05452 putative transmembrane protein; 2-nitropropane dioxygenase complement(895954..896961) Parvibaculum lavamentivorans DS-1 5454831 YP_001412105.1 CDS Plav_0825 NC_009719.1 897055 897966 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A1900 transcriptional regulator, LysR-family; LysR family transcriptional regulator complement(897055..897966) Parvibaculum lavamentivorans DS-1 5456500 YP_001412106.1 CDS Plav_0826 NC_009719.1 898189 899187 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: rpd:RPD_2021 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 898189..899187 Parvibaculum lavamentivorans DS-1 5455869 YP_001412107.1 CDS Plav_0827 NC_009719.1 899237 899941 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pmy:Pmen_4353 putative transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator complement(899237..899941) Parvibaculum lavamentivorans DS-1 5455543 YP_001412108.1 CDS Plav_0828 NC_009719.1 900042 900872 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: hne:HNE_0905 dioxygenase, TauD/TfdA family; taurine dioxygenase 900042..900872 Parvibaculum lavamentivorans DS-1 5455401 YP_001412109.1 CDS Plav_0829 NC_009719.1 900941 901810 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reh:H16_A0038 alpha-ketoglutarate-dependent taurine dioxygenase; taurine dioxygenase 900941..901810 Parvibaculum lavamentivorans DS-1 5455586 YP_001412110.1 CDS Plav_0830 NC_009719.1 902229 903134 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: atc:AGR_C_664 hypothetical protein; hypothetical protein complement(902229..903134) Parvibaculum lavamentivorans DS-1 5454112 YP_001412111.1 CDS Plav_0831 NC_009719.1 903156 904493 R PFAM: beta-lactamase; KEGG: sen:SACE_2212 beta-lactamase; beta-lactamase complement(903156..904493) Parvibaculum lavamentivorans DS-1 5455808 YP_001412112.1 CDS Plav_0832 NC_009719.1 904810 905946 R PFAM: beta-lactamase; KEGG: hne:HNE_1398 beta-lactamase; beta-lactamase complement(904810..905946) Parvibaculum lavamentivorans DS-1 5455674 YP_001412113.1 CDS Plav_0833 NC_009719.1 905988 907958 D KEGG: lic:LIC20191 hypothetical protein; hypothetical protein 905988..907958 Parvibaculum lavamentivorans DS-1 5455982 YP_001412114.1 CDS Plav_0834 NC_009719.1 907945 908739 R activator of 3-phenylpropionic acid catabolism; DNA-binding transcriptional activator MhpR complement(907945..908739) Parvibaculum lavamentivorans DS-1 5453871 YP_001412115.1 CDS Plav_0835 NC_009719.1 908805 909530 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1923 ABC transporter related; ABC transporter-like protein complement(908805..909530) Parvibaculum lavamentivorans DS-1 5453872 YP_001412116.1 CDS Plav_0836 NC_009719.1 909523 910191 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mfa:Mfla_1392 molybdate ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit complement(909523..910191) Parvibaculum lavamentivorans DS-1 5454778 YP_001412117.1 CDS Plav_0837 NC_009719.1 910219 911013 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: aeh:Mlg_1925 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(910219..911013) Parvibaculum lavamentivorans DS-1 5454022 YP_001412118.1 CDS Plav_0838 NC_009719.1 911200 912057 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: eli:ELI_04765 taurine dioxygenase; taurine dioxygenase 911200..912057 Parvibaculum lavamentivorans DS-1 5455095 YP_001412119.1 CDS Plav_0839 NC_009719.1 912084 912653 D PFAM: protein of unknown function DUF1214; KEGG: afu:AF2163 hypothetical protein; hypothetical protein 912084..912653 Parvibaculum lavamentivorans DS-1 5453427 YP_001412120.1 CDS Plav_0840 NC_009719.1 912650 913195 D KEGG: nar:Saro_2217 integral membrane protein-like; integral membrane protein 912650..913195 Parvibaculum lavamentivorans DS-1 5456105 YP_001412121.1 CDS Plav_0841 NC_009719.1 913218 913793 D PFAM: protein of unknown function DUF1214; KEGG: afu:AF2163 hypothetical protein; hypothetical protein 913218..913793 Parvibaculum lavamentivorans DS-1 5456001 YP_001412122.1 CDS Plav_0842 NC_009719.1 913790 914335 D PFAM: protein of unknown function DUF1254; KEGG: nar:Saro_2217 integral membrane protein-like; hypothetical protein 913790..914335 Parvibaculum lavamentivorans DS-1 5453883 YP_001412123.1 CDS Plav_0843 NC_009719.1 914325 915872 R KEGG: hne:HNE_2421 hypothetical protein; hypothetical protein complement(914325..915872) Parvibaculum lavamentivorans DS-1 5456698 YP_001412124.1 CDS Plav_0844 NC_009719.1 915941 918040 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: sme:SMc00114 probable protease II oligopeptidase B hydrolase serine protease protein; oligopeptidase B complement(915941..918040) Parvibaculum lavamentivorans DS-1 5456343 YP_001412125.1 CDS Plav_0845 NC_009719.1 918231 918650 R TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: sme:SMc00117 peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase complement(918231..918650) Parvibaculum lavamentivorans DS-1 5454951 YP_001412126.1 CDS Plav_0846 NC_009719.1 918799 919251 R PFAM: MaoC domain protein dehydratase; KEGG: MaoC family protein; dehydratase complement(918799..919251) Parvibaculum lavamentivorans DS-1 5454037 YP_001412127.1 CDS Plav_0847 NC_009719.1 919350 919823 R PFAM: OmpA/MotB domain protein; KEGG: pau:PA14_53500 hypothetical protein; OmpA/MotB domain-containing protein complement(919350..919823) Parvibaculum lavamentivorans DS-1 5456459 YP_001412128.1 CDS Plav_0848 NC_009719.1 920150 921703 R PFAM: AMP-dependent synthetase and ligase; KEGG: hne:HNE_2308 AMP-binding protein; AMP-dependent synthetase and ligase complement(920150..921703) Parvibaculum lavamentivorans DS-1 5454428 YP_001412129.1 CDS Plav_0849 NC_009719.1 921923 922828 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 921923..922828 Parvibaculum lavamentivorans DS-1 5455684 YP_001412130.1 CDS Plav_0850 NC_009719.1 923028 924881 R PFAM: sodium/hydrogen exchanger; KEGG: abo:ABO_1404 NhaP-type Na+/H+ and K+/H+ antiporters; sodium/hydrogen exchanger complement(923028..924881) Parvibaculum lavamentivorans DS-1 5456617 YP_001412131.1 CDS Plav_0851 NC_009719.1 924966 926273 R PFAM: major facilitator superfamily MFS_1; KEGG: mmr:Mmar10_0880 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(924966..926273) Parvibaculum lavamentivorans DS-1 5456031 YP_001412132.1 CDS Plav_0852 NC_009719.1 926270 927067 R PFAM: Phytanoyl-CoA dioxygenase; KEGG: ani:AN6818.2 hypothetical protein; phytanoyl-CoA dioxygenase complement(926270..927067) Parvibaculum lavamentivorans DS-1 5455998 YP_001412133.1 CDS Plav_0853 NC_009719.1 927200 928783 D KEGG: bja:bll5942 flavin-binding family monooxygenase; flavin-binding family monooxygenase 927200..928783 Parvibaculum lavamentivorans DS-1 5456782 YP_001412134.1 CDS Plav_0854 NC_009719.1 928808 930058 R PFAM: major facilitator superfamily MFS_1; KEGG: mmr:Mmar10_0880 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(928808..930058) Parvibaculum lavamentivorans DS-1 5455618 YP_001412135.1 CDS Plav_0855 NC_009719.1 930156 930830 R PFAM: Male sterility domain; KEGG: rpa:RPA2985 conserved unknownl protein; hypothetical protein complement(930156..930830) Parvibaculum lavamentivorans DS-1 5455304 YP_001412136.1 CDS Plav_0856 NC_009719.1 930877 932097 R PFAM: regulatory protein MerR; Citrate synthase; KEGG: rxy:Rxyl_2556 citrate synthase; citrate synthase complement(930877..932097) Parvibaculum lavamentivorans DS-1 5455857 YP_001412137.1 CDS Plav_0857 NC_009719.1 932269 933441 D PFAM: Citrate synthase; KEGG: atu:Atu5306 citrate synthase; citrate (Si)-synthase 932269..933441 Parvibaculum lavamentivorans DS-1 5455737 YP_001412138.1 CDS Plav_0858 NC_009719.1 933555 934676 D KEGG: sme:SMc03928 hypothetical protein; hypothetical protein 933555..934676 Parvibaculum lavamentivorans DS-1 5454548 YP_001412139.1 CDS Plav_0859 NC_009719.1 934653 935459 R hypothetical protein complement(934653..935459) Parvibaculum lavamentivorans DS-1 5454503 YP_001412140.1 CDS Plav_0860 NC_009719.1 935444 936064 R hypothetical protein complement(935444..936064) Parvibaculum lavamentivorans DS-1 5453438 YP_001412141.1 CDS Plav_0861 NC_009719.1 936061 936828 R PFAM: ABC-2 type transporter; KEGG: sde:Sde_2924 putative ABC transporter inner membrane subunit; ABC transporter complement(936061..936828) Parvibaculum lavamentivorans DS-1 5454391 YP_001412142.1 CDS Plav_0862 NC_009719.1 936825 937751 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psa:PST_3929 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(936825..937751) Parvibaculum lavamentivorans DS-1 5454162 YP_001412143.1 CDS Plav_0863 NC_009719.1 937843 938262 R hypothetical protein complement(937843..938262) Parvibaculum lavamentivorans DS-1 5454330 YP_001412144.1 CDS Plav_0864 NC_009719.1 938345 939487 D PFAM: Saccharopine dehydrogenase; KEGG: hal:VNG2166Cm hypothetical protein; saccharopine dehydrogenase 938345..939487 Parvibaculum lavamentivorans DS-1 5454312 YP_001412145.1 CDS Plav_0865 NC_009719.1 939484 939747 R hypothetical protein complement(939484..939747) Parvibaculum lavamentivorans DS-1 5454426 YP_001412146.1 CDS Plav_0866 NC_009719.1 939778 940083 R hypothetical protein complement(939778..940083) Parvibaculum lavamentivorans DS-1 5454748 YP_001412147.1 CDS Plav_0867 NC_009719.1 940245 941342 D KEGG: hne:HNE_0728 hypothetical protein; hypothetical protein 940245..941342 Parvibaculum lavamentivorans DS-1 5455530 YP_001412148.1 CDS Plav_0868 NC_009719.1 941345 942136 R PFAM: helix-turn-helix domain protein; KEGG: sme:SMc00089 hypothetical protein; XRE family transcriptional regulator complement(941345..942136) Parvibaculum lavamentivorans DS-1 5456771 YP_001412149.1 CDS Plav_0869 NC_009719.1 942133 942402 R hypothetical protein complement(942133..942402) Parvibaculum lavamentivorans DS-1 5455855 YP_001412150.1 CDS Plav_0870 NC_009719.1 942543 943475 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ppd:Ppro_3541 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 942543..943475 Parvibaculum lavamentivorans DS-1 5456882 YP_001412151.1 CDS Plav_0871 NC_009719.1 943766 944182 D PFAM: ROSMUCR transcriptional regulator; KEGG: transcriptional regulator; MucR family transcriptional regulator 943766..944182 Parvibaculum lavamentivorans DS-1 5454005 YP_001412152.1 CDS Plav_0872 NC_009719.1 944320 944829 D PFAM: protein of unknown function DUF1457; KEGG: hne:HNE_0740 hypothetical protein; hypothetical protein 944320..944829 Parvibaculum lavamentivorans DS-1 5453974 YP_001412153.1 CDS Plav_0873 NC_009719.1 944921 945388 D hypothetical protein 944921..945388 Parvibaculum lavamentivorans DS-1 5456082 YP_001412154.1 CDS Plav_0874 NC_009719.1 945363 945953 R PFAM: helix-turn-helix domain protein; KEGG: nar:Saro_2070 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(945363..945953) Parvibaculum lavamentivorans DS-1 5455461 YP_001412155.1 CDS Plav_0875 NC_009719.1 946037 946447 D PFAM: Chromosomal replication initiator DnaA domain; KEGG: mmr:Mmar10_0894 DnaA related protein; chromosomal replication initiator DnaA domain-containing protein 946037..946447 Parvibaculum lavamentivorans DS-1 5454719 YP_001412156.1 CDS Plav_0876 NC_009719.1 946444 947250 D KEGG: rpe:RPE_1869 hypothetical protein; hypothetical protein 946444..947250 Parvibaculum lavamentivorans DS-1 5455165 YP_001412157.1 CDS Plav_0877 NC_009719.1 947214 947639 R PFAM: Fe-S metabolism associated SufE; KEGG: nha:Nham_2625 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE complement(947214..947639) Parvibaculum lavamentivorans DS-1 5453358 YP_001412158.1 CDS Plav_0878 NC_009719.1 947765 948175 R hypothetical protein complement(947765..948175) Parvibaculum lavamentivorans DS-1 5455590 YP_001412159.1 CDS Plav_0879 NC_009719.1 948506 949600 R KEGG: mmr:Mmar10_0898 hypothetical protein; hypothetical protein complement(948506..949600) Parvibaculum lavamentivorans DS-1 5456073 YP_001412160.1 CDS Plav_0880 NC_009719.1 949796 950131 D PFAM: protein of unknown function DUF1491; KEGG: hypothetical protein; hypothetical protein 949796..950131 Parvibaculum lavamentivorans DS-1 5456299 YP_001412161.1 CDS Plav_0881 NC_009719.1 950156 950374 R KEGG: bja:bsl7372 hypothetical protein; hypothetical protein complement(950156..950374) Parvibaculum lavamentivorans DS-1 5453695 YP_001412162.1 CDS Plav_0882 NC_009719.1 950485 952161 D TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: swi:Swit_5127 peptide chain release factor 3; peptide chain release factor 3 950485..952161 Parvibaculum lavamentivorans DS-1 5456778 YP_001412163.1 CDS Plav_0883 NC_009719.1 952202 953344 D PFAM: MscS Mechanosensitive ion channel; KEGG: mmr:Mmar10_0910 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 952202..953344 Parvibaculum lavamentivorans DS-1 5454731 YP_001412164.1 CDS Plav_0884 NC_009719.1 953346 954554 R KEGG: mba:Mbar_A0316 hypothetical protein; hypothetical protein complement(953346..954554) Parvibaculum lavamentivorans DS-1 5455273 YP_001412165.1 CDS Plav_0885 NC_009719.1 954551 955213 R PFAM: regulatory protein TetR; KEGG: transcriptional regulator, TetR family; TetR family transcriptional regulator complement(954551..955213) Parvibaculum lavamentivorans DS-1 5453851 YP_001412166.1 CDS Plav_0886 NC_009719.1 955326 956645 D PFAM: FAD dependent oxidoreductase; KEGG: mag:amb2799 glycine/D-amino acid oxidase; FAD dependent oxidoreductase 955326..956645 Parvibaculum lavamentivorans DS-1 5453598 YP_001412167.1 CDS Plav_0887 NC_009719.1 956790 957182 D hypothetical protein 956790..957182 Parvibaculum lavamentivorans DS-1 5454101 YP_001412168.1 CDS Plav_0888 NC_009719.1 957294 957812 R PFAM: conserved hypothetical protein; KEGG: hypothetical protein; hypothetical protein complement(957294..957812) Parvibaculum lavamentivorans DS-1 5456024 YP_001412169.1 CDS Plav_0889 NC_009719.1 957799 959457 R PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bms:BR0181 sulfite reductase (NADPH) hemoprotein beta-component; sulfite reductase complement(957799..959457) Parvibaculum lavamentivorans DS-1 5453887 YP_001412170.1 CDS Plav_0890 NC_009719.1 959492 959827 R KEGG: mlo:msl3231 hypothetical protein; hypothetical protein complement(959492..959827) Parvibaculum lavamentivorans DS-1 5455526 YP_001412171.1 CDS Plav_0891 NC_009719.1 960035 960841 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C0801 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit; binding-protein-dependent transport system inner membrane protein complement(960035..960841) Parvibaculum lavamentivorans DS-1 5453895 YP_001412172.1 CDS Plav_0892 NC_009719.1 960838 961596 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll1293 ATP-binding protein of ABC transporter; ABC transporter-like protein complement(960838..961596) Parvibaculum lavamentivorans DS-1 5455805 YP_001412173.1 CDS Plav_0893 NC_009719.1 961593 962633 R PFAM: NMT1/THI5 like domain protein; KEGG: hypothetical protein; K02051 sulfonate/nitrate/taurine transport system substrate-binding protein; NMT1/THI5-like domain-containing protein complement(961593..962633) Parvibaculum lavamentivorans DS-1 5456774 YP_001412174.1 CDS Plav_0894 NC_009719.1 962722 963243 R KEGG: nar:Saro_2217 integral membrane protein-like; integral membrane protein complement(962722..963243) Parvibaculum lavamentivorans DS-1 5456628 YP_001412175.1 CDS Plav_0895 NC_009719.1 963240 963824 R PFAM: protein of unknown function DUF1214; KEGG: nar:Saro_2218 protein of unknown function DUF1214; hypothetical protein complement(963240..963824) Parvibaculum lavamentivorans DS-1 5456221 YP_001412176.1 CDS Plav_0896 NC_009719.1 963987 965786 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A1013 ABC transporter component; ABC transporter-like protein complement(963987..965786) Parvibaculum lavamentivorans DS-1 5454749 YP_001412177.1 CDS Plav_0897 NC_009719.1 965851 967926 R TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: mes:Meso_0883 penicillin-binding protein, 1A family; 1A family penicillin-binding protein complement(965851..967926) Parvibaculum lavamentivorans DS-1 5454697 YP_001412178.1 CDS Plav_0898 NC_009719.1 968132 968593 D PFAM: protein of unknown function UPF0153; KEGG: rpb:RPB_3505 uncharacterised conserved protein UCP006173; hypothetical protein 968132..968593 Parvibaculum lavamentivorans DS-1 5453505 YP_001412179.1 CDS Plav_0899 NC_009719.1 968624 969055 D KEGG: rle:RL1484 putative transmembrane protein; putative transmembrane protein 968624..969055 Parvibaculum lavamentivorans DS-1 5455554 YP_001412180.1 CDS Plav_0900 NC_009719.1 969166 970674 D PFAM: phosphate transporter; KEGG: hne:HNE_3040 phosphate transporter family protein; phosphate transporter 969166..970674 Parvibaculum lavamentivorans DS-1 5455534 YP_001412181.1 CDS Plav_0901 NC_009719.1 970892 971353 R PFAM: NUDIX hydrolase; KEGG: bra:BRADO4863 conserved hypothetical protein; putative hydrolase; NUDIX hydrolase complement(970892..971353) Parvibaculum lavamentivorans DS-1 5454353 YP_001412182.1 CDS Plav_0902 NC_009719.1 972153 973499 D PFAM: protein of unknown function DUF264; KEGG: bme:BMEI1350 phage DNA packaging protein; hypothetical protein 972153..973499 Parvibaculum lavamentivorans DS-1 5454901 YP_001412183.1 CDS Plav_0903 NC_009719.1 974469 975644 D TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: rpe:RPE_1895 phage portal protein, HK97 family; HK97 family phage portal protein 974469..975644 Parvibaculum lavamentivorans DS-1 5454730 YP_001412184.1 CDS Plav_0904 NC_009719.1 975616 976221 D KEGG: hypothetical protein; hypothetical protein 975616..976221 Parvibaculum lavamentivorans DS-1 5454356 YP_001412185.1 CDS Plav_0905 NC_009719.1 976418 977077 D TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: bov:BOV_0589 caudovirus prohead protease; HK97 family phage prohead protease 976418..977077 Parvibaculum lavamentivorans DS-1 5453808 YP_001412186.1 CDS Plav_0906 NC_009719.1 977106 978413 D TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: bms:BR0589 major capsid protein, HK97 family; HK97 family phage major capsid protein 977106..978413 Parvibaculum lavamentivorans DS-1 5454190 YP_001412187.1 CDS Plav_0907 NC_009719.1 978419 978847 D KEGG: mlo:mlr8526 hypothetical protein; hypothetical protein 978419..978847 Parvibaculum lavamentivorans DS-1 5453777 YP_001412188.1 CDS Plav_0908 NC_009719.1 978906 979469 D KEGG: rpc:RPC_1813 phage conserved hypothetical protein, phiE125 gp8; hypothetical protein 978906..979469 Parvibaculum lavamentivorans DS-1 5456037 YP_001412189.1 CDS Plav_0909 NC_009719.1 979466 979783 D TIGRFAM: phage head-tail adaptor, putative; PFAM: putative head-tail adaptor protein; KEGG: dvu:DVU1497 head-tail adaptor, putative; phage head-tail adaptor 979466..979783 Parvibaculum lavamentivorans DS-1 5456179 YP_001412190.1 CDS Plav_0910 NC_009719.1 979780 980181 D KEGG: rpe:RPE_1916 gene transfer agent (GTA) orfg8; hypothetical protein 979780..980181 Parvibaculum lavamentivorans DS-1 5456123 YP_001412191.1 CDS Plav_0911 NC_009719.1 980394 980807 D TIGRFAM: phage major tail protein, TP901-1 family; KEGG: rpe:RPE_1917 phage major tail protein, TP901-1 family; TP901-1 family phage major tail protein 980394..980807 Parvibaculum lavamentivorans DS-1 5455129 YP_001412192.1 CDS Plav_0912 NC_009719.1 980815 981729 R hypothetical protein complement(980815..981729) Parvibaculum lavamentivorans DS-1 5455886 YP_001412193.1 CDS Plav_0913 NC_009719.1 981844 982161 D KEGG: atc:AGR_C_1758 hypothetical protein; hypothetical protein 981844..982161 Parvibaculum lavamentivorans DS-1 5455196 YP_001412194.1 CDS Plav_0914 NC_009719.1 982158 982352 D KEGG: nwi:Nwi_1176 phage conserved hypothetical protein; hypothetical protein 982158..982352 Parvibaculum lavamentivorans DS-1 5455835 YP_001412195.1 CDS Plav_0915 NC_009719.1 982360 982977 D KEGG: pde:Pden_2891 phage-related minor tail protein-like; phage-like minor tail protein-like protein 982360..982977 Parvibaculum lavamentivorans DS-1 5456294 YP_001412196.1 CDS Plav_0916 NC_009719.1 982979 983611 D KEGG: pde:Pden_2890 hypothetical protein; hypothetical protein 982979..983611 Parvibaculum lavamentivorans DS-1 5455521 YP_001412197.1 CDS Plav_0917 NC_009719.1 983616 984482 D KEGG: nwi:Nwi_0795 hypothetical protein; hypothetical protein 983616..984482 Parvibaculum lavamentivorans DS-1 5455097 YP_001412198.1 CDS Plav_0918 NC_009719.1 984484 984927 D TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; KEGG: nha:Nham_1425 putative phage cell wall peptidase, NlpC/P60; NlpC/P60 family phage cell wall peptidase 984484..984927 Parvibaculum lavamentivorans DS-1 5455991 YP_001412199.1 CDS Plav_0919 NC_009719.1 984931 988791 D KEGG: nwi:Nwi_0792 gene transfer agent (GTA) like protein; gene transfer agent (GTA)-like protein 984931..988791 Parvibaculum lavamentivorans DS-1 5454627 YP_001412200.1 CDS Plav_0920 NC_009719.1 988784 989500 D KEGG: nwi:Nwi_0791 hypothetical protein; hypothetical protein 988784..989500 Parvibaculum lavamentivorans DS-1 5454285 YP_001412201.1 CDS Plav_0921 NC_009719.1 989608 989970 D hypothetical protein 989608..989970 Parvibaculum lavamentivorans DS-1 5456899 YP_001412202.1 CDS Plav_0922 NC_009719.1 990389 990598 D hypothetical protein 990389..990598 Parvibaculum lavamentivorans DS-1 5456909 YP_001412203.1 CDS Plav_0923 NC_009719.1 990722 991513 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mgi:Mflv_0296 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 990722..991513 Parvibaculum lavamentivorans DS-1 5453469 YP_001412204.1 CDS Plav_0924 NC_009719.1 991541 992692 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rme:Rmet_5357 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 991541..992692 Parvibaculum lavamentivorans DS-1 5454452 YP_001412205.1 CDS Plav_0925 NC_009719.1 992703 993722 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rme:Rmet_5358 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 992703..993722 Parvibaculum lavamentivorans DS-1 5455118 YP_001412206.1 CDS Plav_0926 NC_009719.1 993747 994418 D PFAM: nitroreductase; KEGG: reu:Reut_B3607 nitroreductase; nitroreductase 993747..994418 Parvibaculum lavamentivorans DS-1 5454918 YP_001412207.1 CDS Plav_0927 NC_009719.1 994491 994844 D PFAM: Propeptide PepSY amd peptidase M4; peptidase 994491..994844 Parvibaculum lavamentivorans DS-1 5455735 YP_001412208.1 CDS Plav_0928 NC_009719.1 994875 995546 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: atc:AGR_C_1778 PopP protein; two component transcriptional regulator 994875..995546 Parvibaculum lavamentivorans DS-1 5455810 YP_001412209.1 CDS Plav_0929 NC_009719.1 995536 996915 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: bra:BRADO2729 putative two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 995536..996915 Parvibaculum lavamentivorans DS-1 5455909 YP_001412210.1 CDS Plav_0930 NC_009719.1 997010 997507 D PFAM: 17 kDa surface antigen; KEGG: rbe:RBE_1424 17 kD surface antigen precursor; 17 kDa surface antigen 997010..997507 Parvibaculum lavamentivorans DS-1 5455742 YP_001412211.1 CDS Plav_0931 NC_009719.1 998098 999477 R TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: maq:Maqu_3053 putative ribonuclease BN; putative ribonuclease BN complement(998098..999477) Parvibaculum lavamentivorans DS-1 5456525 YP_001412212.1 CDS Plav_0932 NC_009719.1 999617 999823 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pde:Pden_0954 putative cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(999617..999823) Parvibaculum lavamentivorans DS-1 5456974 YP_001412213.1 CDS Plav_0933 NC_009719.1 1000115 1001536 D KEGG: rpc:RPC_1833 hypothetical protein; hypothetical protein 1000115..1001536 Parvibaculum lavamentivorans DS-1 5456820 YP_001412214.1 CDS Plav_0934 NC_009719.1 1001541 1002557 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bbr:BB4545 D-cysteine desulfhydrase; 1-aminocyclopropane-1-carboxylate deaminase complement(1001541..1002557) Parvibaculum lavamentivorans DS-1 5456706 YP_001412215.1 CDS Plav_0935 NC_009719.1 1002561 1003784 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:bll6906 putative isomerase; L-carnitine dehydratase/bile acid-inducible protein F complement(1002561..1003784) Parvibaculum lavamentivorans DS-1 5456088 YP_001412216.1 CDS Plav_0936 NC_009719.1 1003969 1005822 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: mag:amb0567 signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 1003969..1005822 Parvibaculum lavamentivorans DS-1 5457012 YP_001412217.1 CDS Plav_0937 NC_009719.1 1005825 1007999 R PFAM: peptidase S45 penicillin amidase; KEGG: penicillin amidase family protein; glutaryl-7-aminocephalosporanic-acid acylase complement(1005825..1007999) Parvibaculum lavamentivorans DS-1 5453699 YP_001412218.1 CDS Plav_0938 NC_009719.1 1008149 1009231 D SMART: Tetratricopeptide domain protein; KEGG: rpe:RPE_1932 tetratricopeptide TPR_2; hypothetical protein 1008149..1009231 Parvibaculum lavamentivorans DS-1 5456918 YP_001412219.1 CDS Plav_0939 NC_009719.1 1009288 1010220 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: dar:Daro_2852 hypothetical protein; peptidoglycan-binding domain-containing protein 1009288..1010220 Parvibaculum lavamentivorans DS-1 5453876 YP_001412220.1 CDS Plav_0940 NC_009719.1 1010334 1010816 D PFAM: CcmE/CycJ protein; KEGG: nha:Nham_1438 CcmE/CycJ protein; CcmE/CycJ protein 1010334..1010816 Parvibaculum lavamentivorans DS-1 5454202 YP_001412221.1 CDS Plav_0941 NC_009719.1 1010813 1012795 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: rpc:RPC_1836 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 1010813..1012795 Parvibaculum lavamentivorans DS-1 5453368 YP_001412222.1 CDS Plav_0942 NC_009719.1 1012800 1013273 D PFAM: cytochrome C biogenesis protein; KEGG: bja:blr3128 cytochrome C-type biogenesis protein; cytochrome C biogenesis protein 1012800..1013273 Parvibaculum lavamentivorans DS-1 5455971 YP_001412223.1 CDS Plav_0943 NC_009719.1 1013426 1014901 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bme:BMEI1330 protease do; protease Do 1013426..1014901 Parvibaculum lavamentivorans DS-1 5454152 YP_001412224.1 CDS Plav_0944 NC_009719.1 1014934 1015611 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mmr:Mmar10_0943 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1014934..1015611 Parvibaculum lavamentivorans DS-1 5453464 YP_001412225.1 CDS Plav_0945 NC_009719.1 1015598 1016998 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpa:RPA1932 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1015598..1016998 Parvibaculum lavamentivorans DS-1 5454803 YP_001412226.1 CDS Plav_0946 NC_009719.1 1017042 1019990 D PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: mag:amb2683 glutamine synthetase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 1017042..1019990 Parvibaculum lavamentivorans DS-1 5456243 YP_001412227.1 CDS Plav_0947 NC_009719.1 1020220 1021818 D PFAM: FAD dependent oxidoreductase; KEGG: mlo:mlr3674 phytoene dehydrogenase; FAD dependent oxidoreductase 1020220..1021818 Parvibaculum lavamentivorans DS-1 5453396 YP_001412228.1 CDS Plav_0948 NC_009719.1 1021822 1023432 D PFAM: amine oxidase; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mlo:mlr3676 phytoene dehydrogenase; FAD dependent oxidoreductase 1021822..1023432 Parvibaculum lavamentivorans DS-1 5453399 YP_001412229.1 CDS Plav_0949 NC_009719.1 1023429 1024730 D PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mlo:mlr3677 aminomethyltransferase; glycine cleavage T protein (aminomethyl transferase) 1023429..1024730 Parvibaculum lavamentivorans DS-1 5454438 YP_001412230.1 CDS Plav_0950 NC_009719.1 1024901 1025629 D PFAM: Calcium-binding EF-hand-containing protein; KEGG: hne:HNE_1317 EF hand domain protein; signal transduction protein 1024901..1025629 Parvibaculum lavamentivorans DS-1 5456387 YP_001412231.1 CDS Plav_0951 NC_009719.1 1025667 1026323 D TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: RNA polymerase sigma-70 factor, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1025667..1026323 Parvibaculum lavamentivorans DS-1 5456528 YP_001412232.1 CDS Plav_0952 NC_009719.1 1026349 1026858 D KEGG: mgm:Mmc1_3543 hypothetical protein; hypothetical protein 1026349..1026858 Parvibaculum lavamentivorans DS-1 5455754 YP_001412233.1 CDS Plav_0953 NC_009719.1 1026855 1027388 D KEGG: rsp:RSP_0414 hypothetical protein; hypothetical protein 1026855..1027388 Parvibaculum lavamentivorans DS-1 5455300 YP_001412234.1 CDS Plav_0954 NC_009719.1 1027406 1028743 D PFAM: FAD dependent oxidoreductase; KEGG: cya:CYA_1308 oxidoreductase, FAD-dependent; FAD dependent oxidoreductase 1027406..1028743 Parvibaculum lavamentivorans DS-1 5454794 YP_001412235.1 CDS Plav_0955 NC_009719.1 1028816 1030201 D PFAM: glutamine synthetase catalytic region; KEGG: pau:PA14_03860 putative glutamine synthetase; glutamine synthetase 1028816..1030201 Parvibaculum lavamentivorans DS-1 5456547 YP_001412236.1 CDS Plav_0956 NC_009719.1 1030252 1032054 R KEGG: rpe:RPE_1951 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(1030252..1032054) Parvibaculum lavamentivorans DS-1 5454665 YP_001412237.1 CDS pepN NC_009719.1 1032457 1035093 R TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: noc:Noc_1314 peptidase M, neutral zinc metallopeptidase, zinc-binding site; aminopeptidase N complement(1032457..1035093) Parvibaculum lavamentivorans DS-1 5453413 YP_001412238.1 CDS Plav_0958 NC_009719.1 1035275 1035901 D PFAM: GCN5-related N-acetyltransferase; KEGG: dge:Dgeo_1160 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1035275..1035901 Parvibaculum lavamentivorans DS-1 5456713 YP_001412239.1 CDS Plav_0959 NC_009719.1 1035882 1036418 R KEGG: mmr:Mmar10_0953 hypothetical protein; hypothetical protein complement(1035882..1036418) Parvibaculum lavamentivorans DS-1 5455566 YP_001412240.1 CDS Plav_0960 NC_009719.1 1036695 1039838 R PFAM: acriflavin resistance protein; KEGG: ade:Adeh_1476 acriflavin resistance protein; acriflavin resistance protein complement(1036695..1039838) Parvibaculum lavamentivorans DS-1 5455595 YP_001412241.1 CDS Plav_0961 NC_009719.1 1039859 1041028 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bpa:BPP3833 putative HlyD-like secretion protein; RND family efflux transporter MFP subunit complement(1039859..1041028) Parvibaculum lavamentivorans DS-1 5456214 YP_001412242.1 CDS Plav_0962 NC_009719.1 1041139 1041636 D PFAM: regulatory protein MarR; KEGG: mlo:mlr8230 transcriptional regulator; MarR family transcriptional regulator 1041139..1041636 Parvibaculum lavamentivorans DS-1 5456956 YP_001412243.1 CDS Plav_0963 NC_009719.1 1041668 1042939 D PFAM: beta-lactamase; KEGG: syn:sll1167 penicillin-binding protein 4; beta-lactamase 1041668..1042939 Parvibaculum lavamentivorans DS-1 5456292 YP_001412244.1 CDS Plav_0964 NC_009719.1 1043115 1044242 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpa:RPA1708 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1043115..1044242 Parvibaculum lavamentivorans DS-1 5454606 YP_001412245.1 CDS Plav_0965 NC_009719.1 1044356 1045585 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 1044356..1045585 Parvibaculum lavamentivorans DS-1 5454372 YP_001412246.1 CDS Plav_0966 NC_009719.1 1045716 1046375 R PFAM: Glutathione S-transferase domain; KEGG: mxa:MXAN_0089 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein complement(1045716..1046375) Parvibaculum lavamentivorans DS-1 5453588 YP_001412247.1 CDS Plav_0967 NC_009719.1 1046407 1047207 R PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: bbr:BB0213 hypothetical protein; hypothetical protein complement(1046407..1047207) Parvibaculum lavamentivorans DS-1 5455592 YP_001412248.1 CDS Plav_0968 NC_009719.1 1047300 1047737 D PFAM: regulatory protein MarR; KEGG: swi:Swit_4489 transcriptional regulator, MarR family; MarR family transcriptional regulator 1047300..1047737 Parvibaculum lavamentivorans DS-1 5454549 YP_001412249.1 CDS Plav_0969 NC_009719.1 1047982 1048680 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: swi:Swit_2164 methyltransferase type 12; type 12 methyltransferase complement(1047982..1048680) Parvibaculum lavamentivorans DS-1 5453434 YP_001412250.1 CDS Plav_0970 NC_009719.1 1048670 1049134 R PFAM: protein of unknown function UPF0074; KEGG: bja:blr7974 hypothetical protein; BadM/Rrf2 family transcriptional regulator complement(1048670..1049134) Parvibaculum lavamentivorans DS-1 5454236 YP_001412251.1 CDS Plav_0971 NC_009719.1 1049633 1050361 D KEGG: bbt:BBta_p0020 hypothetical protein; hypothetical protein 1049633..1050361 Parvibaculum lavamentivorans DS-1 5454564 YP_001412252.1 CDS Plav_0972 NC_009719.1 1050376 1050882 R KEGG: nwi:Nwi_0260 hypothetical protein; hypothetical protein complement(1050376..1050882) Parvibaculum lavamentivorans DS-1 5453858 YP_001412253.1 CDS Plav_0973 NC_009719.1 1050967 1051284 R KEGG: bja:blr4654 hypothetical protein; hypothetical protein complement(1050967..1051284) Parvibaculum lavamentivorans DS-1 5453910 YP_001412254.1 CDS Plav_0974 NC_009719.1 1051281 1052231 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: bja:blr4653 molecular chaperone DnaJ family; chaperone DnaJ domain-containing protein complement(1051281..1052231) Parvibaculum lavamentivorans DS-1 5456338 YP_001412255.1 CDS Plav_0975 NC_009719.1 1052595 1054043 D PFAM: Lytic transglycosylase catalytic; SMART: extracellular solute-binding protein family 3; KEGG: mmr:Mmar10_1005 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 1052595..1054043 Parvibaculum lavamentivorans DS-1 5456605 YP_001412256.1 CDS Plav_0976 NC_009719.1 1054191 1054823 D PFAM: OmpW family protein; KEGG: mmr:Mmar10_0595 OmpW family protein; OmpW family protein 1054191..1054823 Parvibaculum lavamentivorans DS-1 5457038 YP_001412257.1 CDS Plav_0977 NC_009719.1 1054974 1056473 D KEGG: pae:PA2097 probable flavin-binding monooxygenase; putative flavin-binding monooxygenase 1054974..1056473 Parvibaculum lavamentivorans DS-1 5457034 YP_001412258.1 CDS Plav_0978 NC_009719.1 1056575 1057066 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1056575..1057066 Parvibaculum lavamentivorans DS-1 5455511 YP_001412259.1 CDS Plav_0979 NC_009719.1 1057075 1058943 R PFAM: Alkaline phosphatase; KEGG: she:Shewmr4_3312 twin-arginine translocation pathway signal; alkaline phosphatase complement(1057075..1058943) Parvibaculum lavamentivorans DS-1 5455557 YP_001412260.1 CDS Plav_0980 NC_009719.1 1059130 1060032 D PFAM: PfkB domain protein; KEGG: gsu:GSU0692 carbohydrate kinase, PfkB family; ribokinase-like domain-containing protein 1059130..1060032 Parvibaculum lavamentivorans DS-1 5456422 YP_001412261.1 CDS Plav_0981 NC_009719.1 1060022 1062397 R PFAM: helix-turn-helix- domain containing protein AraC type; Acetamidase/Formamidase; KEGG: bxe:Bxe_B0602 transcriptional regulator, AraC family with acetamidase/formamidase activity; helix-turn-helix domain-containing protein complement(1060022..1062397) Parvibaculum lavamentivorans DS-1 5454404 YP_001412262.1 CDS Plav_0982 NC_009719.1 1062592 1063671 R PFAM: Acetamidase/Formamidase; KEGG: bxe:Bxe_B0603 predicted acetamidase/formamidase; acetamidase/formamidase complement(1062592..1063671) Parvibaculum lavamentivorans DS-1 5456729 YP_001412263.1 CDS Plav_0983 NC_009719.1 1063863 1064654 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ecv:APECO1_3372 hypothetical protein; extradiol ring-cleavage dioxygenase class III protein subunit B complement(1063863..1064654) Parvibaculum lavamentivorans DS-1 5456151 YP_001412264.1 CDS Plav_0984 NC_009719.1 1064681 1065865 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: sil:SPO3681 Rieske 2Fe-2S domain protein; Rieske (2Fe-2S) domain-containing protein complement(1064681..1065865) Parvibaculum lavamentivorans DS-1 5453788 YP_001412265.1 CDS Plav_0985 NC_009719.1 1066198 1066806 D PFAM: NADPH-dependent FMN reductase; KEGG: pmy:Pmen_1997 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1066198..1066806 Parvibaculum lavamentivorans DS-1 5454585 YP_001412266.1 CDS Plav_0986 NC_009719.1 1066930 1067745 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bja:blr0937 putative dioxygenase; taurine dioxygenase 1066930..1067745 Parvibaculum lavamentivorans DS-1 5456035 YP_001412267.1 CDS Plav_0987 NC_009719.1 1067761 1068606 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: mes:Meso_2942 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1067761..1068606) Parvibaculum lavamentivorans DS-1 5454763 YP_001412268.1 CDS Plav_0988 NC_009719.1 1068640 1069494 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: rme:Rmet_4136 taurine catabolism dioxygenase TauD/TfdA; taurine catabolism dioxygenase TauD/TfdA complement(1068640..1069494) Parvibaculum lavamentivorans DS-1 5454566 YP_001412269.1 CDS Plav_0989 NC_009719.1 1070065 1072539 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: TonB-dependent receptor; K02014 iron complex outermembrane recepter protein; TonB-dependent receptor plug 1070065..1072539 Parvibaculum lavamentivorans DS-1 5455730 YP_001412270.1 CDS Plav_0990 NC_009719.1 1072593 1073930 D PFAM: major facilitator superfamily MFS_1; KEGG: plu:plu3814 hypothetical protein; major facilitator superfamily transporter 1072593..1073930 Parvibaculum lavamentivorans DS-1 5454802 YP_001412271.1 CDS Plav_0991 NC_009719.1 1073980 1075047 D PFAM: luciferase family protein; KEGG: plu:plu3815 hypothetical protein; luciferase family protein 1073980..1075047 Parvibaculum lavamentivorans DS-1 5456054 YP_001412272.1 CDS Plav_0992 NC_009719.1 1075044 1075718 D PFAM: isochorismatase hydrolase; KEGG: hne:HNE_1257 isochorismatase family protein; isochorismatase hydrolase 1075044..1075718 Parvibaculum lavamentivorans DS-1 5454752 YP_001412273.1 CDS Plav_0993 NC_009719.1 1075711 1077081 D KEGG: hne:HNE_1256 hypothetical protein; hypothetical protein 1075711..1077081 Parvibaculum lavamentivorans DS-1 5454531 YP_001412274.1 CDS Plav_0994 NC_009719.1 1077112 1077633 D PFAM: flavin reductase domain protein FMN-binding; KEGG: mag:amb2577 actinorhodin polyketide dimerase; flavin reductase domain-containing protein 1077112..1077633 Parvibaculum lavamentivorans DS-1 5454374 YP_001412275.1 CDS Plav_0995 NC_009719.1 1077735 1078361 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: mag:amb3549 periplasmic protein TonB, links inner and outer membranes; TonB family protein 1077735..1078361 Parvibaculum lavamentivorans DS-1 5457003 YP_001412276.1 CDS Plav_0996 NC_009719.1 1078432 1079331 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A1755 biopolymer transport ExbB protein; MotA/TolQ/ExbB proton channel 1078432..1079331 Parvibaculum lavamentivorans DS-1 5456735 YP_001412277.1 CDS Plav_0997 NC_009719.1 1079360 1079785 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: azo:azo0233 putative biopolymer transport protein ExbD; biopolymer transport protein ExbD/TolR 1079360..1079785 Parvibaculum lavamentivorans DS-1 5456414 YP_001412278.1 CDS Plav_0998 NC_009719.1 1079798 1080223 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cvi:CV1986 biopolymer transport exbD transmembrane protein; biopolymer transport protein ExbD/TolR 1079798..1080223 Parvibaculum lavamentivorans DS-1 5455831 YP_001412279.1 CDS Plav_0999 NC_009719.1 1080333 1081280 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_2196 probable transcriptional regulator; LysR family transcriptional regulator complement(1080333..1081280) Parvibaculum lavamentivorans DS-1 5456677 YP_001412280.1 CDS Plav_1000 NC_009719.1 1081580 1082902 D PFAM: outer membrane efflux protein; KEGG: bam:Bamb_6370 type I secretion outer membrane protein, TolC family; outer membrane efflux protein 1081580..1082902 Parvibaculum lavamentivorans DS-1 5456359 YP_001412281.1 CDS Plav_1001 NC_009719.1 1082979 1092956 D PFAM: C-type lectin domain protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein; C-type lectin domain-containing protein 1082979..1092956 Parvibaculum lavamentivorans DS-1 5455818 YP_001412282.1 CDS Plav_1002 NC_009719.1 1092966 1095134 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_B0690 ABC-type RTX toxin transporter, ATPase and permease components: Prot1E family; ABC transporter-like protein 1092966..1095134 Parvibaculum lavamentivorans DS-1 5456389 YP_001412283.1 CDS Plav_1003 NC_009719.1 1095131 1096450 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_6372 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein 1095131..1096450 Parvibaculum lavamentivorans DS-1 5456439 YP_001412284.1 CDS Plav_1004 NC_009719.1 1097426 1099735 D KEGG: swi:Swit_5200 putative nitric-oxide reductase; putative nitric-oxide reductase 1097426..1099735 Parvibaculum lavamentivorans DS-1 5456366 YP_001412285.1 CDS Plav_1005 NC_009719.1 1099773 1100183 D KEGG: azo:azo3083 conserved hypothetical membrane protein; hypothetical protein 1099773..1100183 Parvibaculum lavamentivorans DS-1 5456740 YP_001412286.1 CDS Plav_1006 NC_009719.1 1100186 1101355 R PFAM: NnrS family protein; KEGG: rde:RD1_1694 NnrS protein, putative; NnrS family protein complement(1100186..1101355) Parvibaculum lavamentivorans DS-1 5456610 YP_001412287.1 CDS Plav_1007 NC_009719.1 1101424 1101900 D KEGG: hne:HNE_1549 hypothetical protein; hypothetical protein 1101424..1101900 Parvibaculum lavamentivorans DS-1 5456306 YP_001412288.1 CDS Plav_1008 NC_009719.1 1101910 1102362 R TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: mes:Meso_4276 pseudoazurin; pseudoazurin complement(1101910..1102362) Parvibaculum lavamentivorans DS-1 5457013 YP_001412289.1 CDS Plav_1009 NC_009719.1 1102440 1103492 R TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 2; KEGG: pna:Pnap_1326 nitrite reductase, copper-containing; nitrite reductase complement(1102440..1103492) Parvibaculum lavamentivorans DS-1 5457025 YP_001412290.1 CDS Plav_1010 NC_009719.1 1103552 1104325 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: rpa:RPA4143 putative nitric oxide responsive transcriptional regulator NnrR, Crp/Fnr family; CRP/FNR family transcriptional regulator 1103552..1104325 Parvibaculum lavamentivorans DS-1 5456452 YP_001412291.1 CDS Plav_1011 NC_009719.1 1104407 1104628 D KEGG: rsq:Rsph17025_0969 hypothetical protein; hypothetical protein 1104407..1104628 Parvibaculum lavamentivorans DS-1 5456576 YP_001412292.1 CDS Plav_1012 NC_009719.1 1105014 1105103 D TIGRFAM: K+-transporting ATPase, F subunit; K+-transporting ATPase subunit F 1105014..1105103 Parvibaculum lavamentivorans DS-1 5456497 YP_001412293.1 CDS Plav_1013 NC_009719.1 1105141 1107258 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rpc:RPC_4549 potassium-translocating P-type ATPase, B subunit; K+-transporting ATPase subunit B 1105141..1107258 Parvibaculum lavamentivorans DS-1 5455297 YP_001412294.1 CDS Plav_1014 NC_009719.1 1107384 1109066 D TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K transporting ATPase A subunit; KEGG: rsq:Rsph17025_3784 osmosensitive K+ channel histidine kinase-like protein; potassium-transporting ATPase subunit A 1107384..1109066 Parvibaculum lavamentivorans DS-1 5456307 YP_001412295.1 CDS Plav_1015 NC_009719.1 1109088 1109651 D PFAM: K transporting ATPase KdpC subunit; KEGG: rsq:Rsph17025_3785 osmosensitive K+ channel His kinase sensor; potassium-transporting ATPase 1109088..1109651 Parvibaculum lavamentivorans DS-1 5456396 YP_001412296.1 CDS Plav_1017 NC_009719.1 1112433 1113122 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bra:BRADO5826 response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family); two component transcriptional regulator 1112433..1113122 Parvibaculum lavamentivorans DS-1 5456816 YP_001412297.1 CDS Plav_1018 NC_009719.1 1113770 1114663 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_1612 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1113770..1114663 Parvibaculum lavamentivorans DS-1 5456591 YP_001412298.1 CDS Plav_1019 NC_009719.1 1114790 1116292 D PFAM: major facilitator superfamily MFS_1; KEGG: eli:ELI_00290 hypothetical protein; major facilitator superfamily transporter 1114790..1116292 Parvibaculum lavamentivorans DS-1 5455267 YP_001412299.1 CDS Plav_1020 NC_009719.1 1116417 1117238 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_0378 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1116417..1117238 Parvibaculum lavamentivorans DS-1 5456428 YP_001412300.1 CDS Plav_1021 NC_009719.1 1117268 1118089 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_0378 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1117268..1118089 Parvibaculum lavamentivorans DS-1 5456334 YP_001412301.1 CDS Plav_1022 NC_009719.1 1118135 1119871 R PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: hne:HNE_3525 amidohydrolase family protein/D-aminoacylase domain protein; amidohydrolase 3 complement(1118135..1119871) Parvibaculum lavamentivorans DS-1 5456965 YP_001412302.1 CDS Plav_1023 NC_009719.1 1120530 1122356 D PFAM: protein of unknown function DUF1302; KEGG: pau:PA14_19810 hypothetical protein; hypothetical protein 1120530..1122356 Parvibaculum lavamentivorans DS-1 5456962 YP_001412303.1 CDS Plav_1024 NC_009719.1 1122701 1124116 D PFAM: aldehyde dehydrogenase; KEGG: nar:Saro_2503 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase 1122701..1124116 Parvibaculum lavamentivorans DS-1 5454124 YP_001412304.1 CDS Plav_1025 NC_009719.1 1124119 1125615 D PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO6529 putative acyl-CoA ligase; AMP-dependent synthetase and ligase 1124119..1125615 Parvibaculum lavamentivorans DS-1 5456390 YP_001412305.1 CDS Plav_1026 NC_009719.1 1125620 1126810 D KEGG: bxe:Bxe_B2367 hypothetical protein; hypothetical protein 1125620..1126810 Parvibaculum lavamentivorans DS-1 5454882 YP_001412306.1 CDS Plav_1027 NC_009719.1 1126810 1127337 D PFAM: protein of unknown function DUF35; KEGG: bxe:Bxe_B2366 hypothetical protein; hypothetical protein 1126810..1127337 Parvibaculum lavamentivorans DS-1 5456411 YP_001412307.1 CDS Plav_1028 NC_009719.1 1127442 1128284 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_0341 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1127442..1128284) Parvibaculum lavamentivorans DS-1 5456555 YP_001412308.1 CDS Plav_1029 NC_009719.1 1128427 1129926 R PFAM: AMP-dependent synthetase and ligase; KEGG: swi:Swit_1600 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1128427..1129926) Parvibaculum lavamentivorans DS-1 5456566 YP_001412309.1 CDS Plav_1030 NC_009719.1 1130029 1130301 D hypothetical protein 1130029..1130301 Parvibaculum lavamentivorans DS-1 5456575 YP_001412310.1 CDS Plav_1031 NC_009719.1 1130337 1131452 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_2915 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 1130337..1131452 Parvibaculum lavamentivorans DS-1 5456453 YP_001412311.1 CDS Plav_1032 NC_009719.1 1131467 1132702 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 1131467..1132702 Parvibaculum lavamentivorans DS-1 5455751 YP_001412312.1 CDS Plav_1033 NC_009719.1 1132773 1133690 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eli:ELI_10750 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(1132773..1133690) Parvibaculum lavamentivorans DS-1 5456734 YP_001412313.1 CDS Plav_1034 NC_009719.1 1133787 1135274 R PFAM: AMP-dependent synthetase and ligase; KEGG: swi:Swit_1600 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1133787..1135274) Parvibaculum lavamentivorans DS-1 5456606 YP_001412314.1 CDS Plav_1035 NC_009719.1 1135523 1137352 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sil:SPO0190 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 1135523..1137352 Parvibaculum lavamentivorans DS-1 5456571 YP_001412315.1 CDS Plav_1036 NC_009719.1 1137367 1138851 D PFAM: aldehyde dehydrogenase; KEGG: aba:Acid345_1381 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase 1137367..1138851 Parvibaculum lavamentivorans DS-1 5456854 YP_001412316.1 CDS Plav_1037 NC_009719.1 1138862 1139353 D PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_B3559 hypothetical protein; dehydratase 1138862..1139353 Parvibaculum lavamentivorans DS-1 5455374 YP_001412317.1 CDS Plav_1038 NC_009719.1 1139359 1140543 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B3560 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1139359..1140543 Parvibaculum lavamentivorans DS-1 5456369 YP_001412318.1 CDS Plav_1039 NC_009719.1 1140997 1141956 D PFAM: RES domain protein; KEGG: nha:Nham_1974 hypothetical protein; RES domain-containing protein 1140997..1141956 Parvibaculum lavamentivorans DS-1 5456321 YP_001412319.1 CDS Plav_1040 NC_009719.1 1142481 1142711 D hypothetical protein 1142481..1142711 Parvibaculum lavamentivorans DS-1 5456659 YP_001412320.1 CDS Plav_1041 NC_009719.1 1142729 1143304 D hypothetical protein 1142729..1143304 Parvibaculum lavamentivorans DS-1 5456305 YP_001412321.1 CDS Plav_1042 NC_009719.1 1143309 1144595 D hypothetical protein 1143309..1144595 Parvibaculum lavamentivorans DS-1 5456850 YP_001412322.1 CDS Plav_1043 NC_009719.1 1144595 1145974 D KEGG: vvy:VVA0689 hypothetical protein; hypothetical protein 1144595..1145974 Parvibaculum lavamentivorans DS-1 5456647 YP_001412323.1 CDS Plav_1044 NC_009719.1 1145974 1147998 D KEGG: rsh:Rsph17029_3200 ATPase-like protein; ATPase-like protein 1145974..1147998 Parvibaculum lavamentivorans DS-1 5456328 YP_001412324.1 CDS Plav_1045 NC_009719.1 1148000 1149187 D hypothetical protein 1148000..1149187 Parvibaculum lavamentivorans DS-1 5456450 YP_001412325.1 CDS Plav_1046 NC_009719.1 1149284 1149526 D TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: nwi:Nwi_3093 helix-turn-helix protein, CopG; CopG/Arc/MetJ family transcriptional regulator 1149284..1149526 Parvibaculum lavamentivorans DS-1 5456360 YP_001412326.1 CDS Plav_1047 NC_009719.1 1149599 1149829 D PFAM: plasmid stabilization system; KEGG: mlo:msr1301 hypothetical protein; plasmid stabilization system protein 1149599..1149829 Parvibaculum lavamentivorans DS-1 5456474 YP_001412327.1 CDS Plav_1048 NC_009719.1 1150159 1153146 D PFAM: SMC domain protein; KEGG: neu:NE2310 ABC transporter; SMC domain-containing protein 1150159..1153146 Parvibaculum lavamentivorans DS-1 5456544 YP_001412328.1 CDS Plav_1049 NC_009719.1 1153403 1154545 R PFAM: integrase family protein; KEGG: hne:HNE_0292 site-specific recombinase, phage integrase family; integrase family protein complement(1153403..1154545) Parvibaculum lavamentivorans DS-1 5456705 YP_001412329.1 CDS Plav_1050 NC_009719.1 1154675 1155682 D TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: bja:blr3734 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A 1154675..1155682 Parvibaculum lavamentivorans DS-1 5456634 YP_001412330.1 CDS Plav_1051 NC_009719.1 1155736 1156569 D PFAM: protein of unknown function DUF81; KEGG: atc:AGR_C_3499 hypothetical protein; hypothetical protein 1155736..1156569 Parvibaculum lavamentivorans DS-1 5456941 YP_001412331.1 CDS Plav_1052 NC_009719.1 1156673 1157770 R PFAM: phospholipase/Carboxylesterase; KEGG: bja:bll1350 hypothetical protein; phospholipase/carboxylesterase complement(1156673..1157770) Parvibaculum lavamentivorans DS-1 5456494 YP_001412332.1 CDS Plav_1053 NC_009719.1 1157910 1159409 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bra:BRADO0757 putative phosphomannomutase/phosphoglucomutase (PMM / PGM); phosphoglucomutase/phosphomannomutase subunit alpha/beta complement(1157910..1159409) Parvibaculum lavamentivorans DS-1 5456496 YP_001412333.1 CDS Plav_1054 NC_009719.1 1159506 1160201 R KEGG: mlo:mlr0565 hypothetical protein; hypothetical protein complement(1159506..1160201) Parvibaculum lavamentivorans DS-1 5456278 YP_001412334.1 CDS Plav_1055 NC_009719.1 1160327 1161232 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bmb:BruAb1_1298 CobA, uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 1160327..1161232 Parvibaculum lavamentivorans DS-1 5456622 YP_001412335.1 CDS Plav_1056 NC_009719.1 1161794 1162009 D PFAM: PhnA protein; KEGG: plu:plu1533 unnamed protein product; similar to alkylphosphonate uptake protein PhnA; PhnA protein 1161794..1162009 Parvibaculum lavamentivorans DS-1 5456417 YP_001412336.1 CDS Plav_1057 NC_009719.1 1162016 1162255 R PFAM: protein of unknown function DUF1289; KEGG: hne:HNE_2096 hypothetical protein; hypothetical protein complement(1162016..1162255) Parvibaculum lavamentivorans DS-1 5456380 YP_001412337.1 CDS Plav_1058 NC_009719.1 1162499 1163476 D PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: ret:RHE_CH02443 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase protein; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1162499..1163476 Parvibaculum lavamentivorans DS-1 5456627 YP_001412338.1 CDS Plav_1059 NC_009719.1 1163480 1164034 R KEGG: bra:BRADO5009 putative intracellular septation protein; putative intracellular septation protein complement(1163480..1164034) Parvibaculum lavamentivorans DS-1 5456277 YP_001412339.1 CDS Plav_1060 NC_009719.1 1164392 1165585 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_2094 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 1164392..1165585 Parvibaculum lavamentivorans DS-1 5456433 YP_001412340.1 CDS Plav_1061 NC_009719.1 1165624 1166754 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_2093 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1165624..1166754 Parvibaculum lavamentivorans DS-1 5456505 YP_001412341.1 CDS Plav_1062 NC_009719.1 1166858 1168387 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sme:SMc04212 putative sensor histidine kinase transmembrane protein; integral membrane sensor signal transduction histidine kinase complement(1166858..1168387) Parvibaculum lavamentivorans DS-1 5456993 YP_001412342.1 CDS Plav_1063 NC_009719.1 1168620 1169420 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1168620..1169420 Parvibaculum lavamentivorans DS-1 5456658 YP_001412343.1 CDS Plav_1064 NC_009719.1 1169560 1169856 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: hne:HNE_2647 antibiotic biosynthesis monooxygenase domain protein; antibiotic biosynthesis monooxygenase 1169560..1169856 Parvibaculum lavamentivorans DS-1 5456096 YP_001412344.1 CDS Plav_1065 NC_009719.1 1169880 1171088 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 1169880..1171088 Parvibaculum lavamentivorans DS-1 5456222 YP_001412345.1 CDS Plav_1066 NC_009719.1 1171157 1173058 R PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pcr:Pcryo_1086 substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(1171157..1173058) Parvibaculum lavamentivorans DS-1 5456352 YP_001412346.1 CDS Plav_1067 NC_009719.1 1173135 1174040 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: 3-oxoacyl-(acyl-carrier-protein) reductase, putative; short-chain dehydrogenase/reductase SDR complement(1173135..1174040) Parvibaculum lavamentivorans DS-1 5456595 YP_001412347.1 CDS Plav_1068 NC_009719.1 1174264 1175532 D PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: bbt:BBta_5279 putative membrane protein of unknown function with nucleoside transporter domain; Na+ dependent nucleoside transporter 1174264..1175532 Parvibaculum lavamentivorans DS-1 5456464 YP_001412348.1 CDS Plav_1069 NC_009719.1 1175554 1176165 D PFAM: Glutathione S-transferase domain; KEGG: hne:HNE_2566 glutathione S-transferase; glutathione S-transferase domain-containing protein 1175554..1176165 Parvibaculum lavamentivorans DS-1 5456478 YP_001412349.1 CDS Plav_1070 NC_009719.1 1176412 1177827 D PFAM: major facilitator superfamily MFS_1; KEGG: mmr:Mmar10_0269 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1176412..1177827 Parvibaculum lavamentivorans DS-1 5456504 YP_001412350.1 CDS Plav_1071 NC_009719.1 1177834 1178262 D PFAM: regulatory protein ArsR; KEGG: bja:blr0846 transcriptional regulatory protein; regulatory protein ArsR 1177834..1178262 Parvibaculum lavamentivorans DS-1 5455957 YP_001412351.1 CDS Plav_1072 NC_009719.1 1178272 1178643 D PFAM: protein of unknown function DUF1428; KEGG: bba:Bd3653 alkaline phosphatase; hypothetical protein 1178272..1178643 Parvibaculum lavamentivorans DS-1 5456602 YP_001412352.1 CDS Plav_1073 NC_009719.1 1178654 1179379 D PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: pde:Pden_3150 protein of unknown function DUF899, thioredoxin family protein; hypothetical protein 1178654..1179379 Parvibaculum lavamentivorans DS-1 5456684 YP_001412353.1 CDS Plav_1074 NC_009719.1 1179632 1180669 R PFAM: luciferase family protein; KEGG: bat:BAS1874 bacterial luciferase family protein; luciferase family protein complement(1179632..1180669) Parvibaculum lavamentivorans DS-1 5457022 YP_001412354.1 CDS Plav_1075 NC_009719.1 1180725 1181168 R PFAM: thioesterase superfamily protein; KEGG: hypothetical protein; thioesterase superfamily protein complement(1180725..1181168) Parvibaculum lavamentivorans DS-1 5456753 YP_001412355.1 CDS Plav_1076 NC_009719.1 1181318 1181821 D PFAM: protein of unknown function DUF1457; hypothetical protein 1181318..1181821 Parvibaculum lavamentivorans DS-1 5455682 YP_001412356.1 CDS Plav_1077 NC_009719.1 1181925 1182461 D PFAM: protein of unknown function DUF1457; KEGG: sme:SMc01000 hypothetical protein; hypothetical protein 1181925..1182461 Parvibaculum lavamentivorans DS-1 5453513 YP_001412357.1 CDS Plav_1078 NC_009719.1 1182544 1183695 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mag:amb2599 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1182544..1183695 Parvibaculum lavamentivorans DS-1 5457000 YP_001412358.1 CDS Plav_1079 NC_009719.1 1183661 1184308 R PFAM: regulatory protein TetR; KEGG: dde:Dde_1892 putative transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1183661..1184308) Parvibaculum lavamentivorans DS-1 5453970 YP_001412359.1 CDS Plav_1080 NC_009719.1 1184427 1185158 D PFAM: Abortive infection protein; KEGG: ecs:ECs1085 hypothetical membrane protein; abortive infection protein 1184427..1185158 Parvibaculum lavamentivorans DS-1 5453458 YP_001412360.1 CDS Plav_1081 NC_009719.1 1185266 1185802 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: mlo:mll0558 hypothetical protein; uracil-DNA glycosylase superfamily protein 1185266..1185802 Parvibaculum lavamentivorans DS-1 5453968 YP_001412361.1 CDS Plav_1082 NC_009719.1 1185811 1186815 D PFAM: alpha/beta hydrolase fold; KEGG: mag:amb4214 lysophospholipase; alpha/beta hydrolase fold protein 1185811..1186815 Parvibaculum lavamentivorans DS-1 5455462 YP_001412362.1 CDS Plav_1083 NC_009719.1 1186826 1189282 R KEGG: pol:Bpro_2089 patatin; patatin complement(1186826..1189282) Parvibaculum lavamentivorans DS-1 5455092 YP_001412363.1 CDS Plav_1084 NC_009719.1 1189701 1191188 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: bja:blr0257 two-component sensor histidine kinase; multi-sensor signal transduction histidine kinase 1189701..1191188 Parvibaculum lavamentivorans DS-1 5455725 YP_001412364.1 CDS Plav_1086 NC_009719.1 1191666 1192037 D PFAM: response regulator receiver; KEGG: bja:blr0259 two-component response regulator; response regulator receiver protein 1191666..1192037 Parvibaculum lavamentivorans DS-1 5453953 YP_001412365.1 CDS Plav_1087 NC_009719.1 1192137 1193165 D PFAM: alpha/beta hydrolase fold; KEGG: atc:AGR_L_210 non-heme chloroperoxidase (chloride peroxidase) (CPO-P) (chloroperoxidase P); alpha/beta hydrolase fold protein 1192137..1193165 Parvibaculum lavamentivorans DS-1 5456950 YP_001412366.1 CDS Plav_1088 NC_009719.1 1193549 1194721 D KEGG: mpt:Mpe_A0156 hypothetical protein; hypothetical protein 1193549..1194721 Parvibaculum lavamentivorans DS-1 5454174 YP_001412367.1 CDS Plav_1089 NC_009719.1 1194718 1195401 R TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: swi:Swit_4555 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(1194718..1195401) Parvibaculum lavamentivorans DS-1 5453544 YP_001412368.1 CDS Plav_1090 NC_009719.1 1195446 1196039 R KEGG: mmr:Mmar10_0622 hypothetical protein; hypothetical protein complement(1195446..1196039) Parvibaculum lavamentivorans DS-1 5453982 YP_001412369.1 CDS Plav_1091 NC_009719.1 1196145 1196636 D PFAM: GCN5-related N-acetyltransferase; KEGG: acr:Acry_1192 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1196145..1196636 Parvibaculum lavamentivorans DS-1 5453933 YP_001412370.1 CDS Plav_1092 NC_009719.1 1196643 1197818 R KEGG: bpa:BPP0341 hypothetical protein; hypothetical protein complement(1196643..1197818) Parvibaculum lavamentivorans DS-1 5455721 YP_001412371.1 CDS Plav_1093 NC_009719.1 1197935 1199395 D TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: reh:H16_B1537 succinate-semialdehyde dehydrogenase (NADP+); succinate-semialdehyde dehydrogenase 1197935..1199395 Parvibaculum lavamentivorans DS-1 5455480 YP_001412372.1 CDS Plav_1094 NC_009719.1 1199399 1200094 D TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase; KEGG: bms:BR1010 ribose 5-phosphate isomerase A; ribose 5-phosphate isomerase 1199399..1200094 Parvibaculum lavamentivorans DS-1 5454793 YP_001412373.1 CDS Plav_1095 NC_009719.1 1200117 1201499 D TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: mmr:Mmar10_0973 glutathione-disulfide reductase; glutathione-disulfide reductase 1200117..1201499 Parvibaculum lavamentivorans DS-1 5456260 YP_001412374.1 CDS Plav_1096 NC_009719.1 1201654 1203048 D TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; KEGG: bja:blr3778 phospho-2-dehydro-3-deoxyheptonate aldolase; phospho-2-dehydro-3-deoxyheptonate aldolase 1201654..1203048 Parvibaculum lavamentivorans DS-1 5456690 YP_001412375.1 CDS Plav_1097 NC_009719.1 1203102 1204115 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: bra:BRADO3166 putative NADP-dependent oxidoreductase; alcohol dehydrogenase complement(1203102..1204115) Parvibaculum lavamentivorans DS-1 5454212 YP_001412376.1 CDS Plav_1098 NC_009719.1 1204191 1205216 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase complement(1204191..1205216) Parvibaculum lavamentivorans DS-1 5456618 YP_001412377.1 CDS Plav_1099 NC_009719.1 1205334 1206716 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rru:Rru_A3237 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein complement(1205334..1206716) Parvibaculum lavamentivorans DS-1 5454216 YP_001412378.1 CDS Plav_1100 NC_009719.1 1206725 1208686 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: rru:Rru_A3236 hypothetical protein; ABC transporter-like protein complement(1206725..1208686) Parvibaculum lavamentivorans DS-1 5456970 YP_001412379.1 CDS Plav_1101 NC_009719.1 1208697 1209941 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: maq:Maqu_1339 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1208697..1209941) Parvibaculum lavamentivorans DS-1 5456536 YP_001412380.1 CDS Plav_1102 NC_009719.1 1210008 1211006 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr0103 probable oxidoreductase; alcohol dehydrogenase complement(1210008..1211006) Parvibaculum lavamentivorans DS-1 5456270 YP_001412381.1 CDS Plav_1103 NC_009719.1 1211195 1212859 D TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; ExsB family protein; KEGG: bms:BR1015 NH(3)-dependent NAD+ synthetase; NAD+ synthetase 1211195..1212859 Parvibaculum lavamentivorans DS-1 5455956 YP_001412382.1 CDS Plav_1104 NC_009719.1 1212856 1214205 D TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: mmr:Mmar10_0986 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 1212856..1214205 Parvibaculum lavamentivorans DS-1 5455819 YP_001412383.1 CDS Plav_1105 NC_009719.1 1214387 1216072 D TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: bra:BRADO4696 putative isopropylmalate synthase (LeuA-like); putative alpha-isopropylmalate/homocitrate synthase family transferase 1214387..1216072 Parvibaculum lavamentivorans DS-1 5455204 YP_001412384.1 CDS Plav_1106 NC_009719.1 1216186 1216665 R KEGG: gvi:gll1194 hypothetical protein; hypothetical protein complement(1216186..1216665) Parvibaculum lavamentivorans DS-1 5456470 YP_001412385.1 CDS Plav_1107 NC_009719.1 1216725 1217666 R PFAM: homocysteine S-methyltransferase; KEGG: mes:Meso_0624 homocysteine S-methyltransferase; homocysteine S-methyltransferase complement(1216725..1217666) Parvibaculum lavamentivorans DS-1 5454597 YP_001412386.1 CDS Plav_1108 NC_009719.1 1217833 1218807 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reh:H16_B0937 transcriptional regulator, AraC-family; helix-turn-helix domain-containing protein 1217833..1218807 Parvibaculum lavamentivorans DS-1 5457010 YP_001412387.1 CDS Plav_1109 NC_009719.1 1218893 1219564 R KEGG: bra:BRADO6928 conserved hypothetical protein; putative signal peptide; hypothetical protein complement(1218893..1219564) Parvibaculum lavamentivorans DS-1 5456731 YP_001412388.1 CDS Plav_1110 NC_009719.1 1219970 1220911 D TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: mes:Meso_0970 RarD protein, DMT superfamily transporter; transporter DMT superfamily protein 1219970..1220911 Parvibaculum lavamentivorans DS-1 5457014 YP_001412389.1 CDS Plav_1111 NC_009719.1 1220967 1221515 R PFAM: conserved hypothetical protein; KEGG: rpe:RPE_2006 conserved hypothetical protein 730; hypothetical protein complement(1220967..1221515) Parvibaculum lavamentivorans DS-1 5455601 YP_001412390.1 CDS Plav_1112 NC_009719.1 1221648 1222616 D PFAM: Peptidoglycan-binding LysM; KEGG: mmr:Mmar10_0991 peptidoglycan-binding LysM; peptidoglycan-binding LysM 1221648..1222616 Parvibaculum lavamentivorans DS-1 5456517 YP_001412391.1 CDS Plav_1113 NC_009719.1 1222755 1224695 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bpe:BP0899 ABC transporter, ATP-binding protein; ABC transporter-like protein 1222755..1224695 Parvibaculum lavamentivorans DS-1 5455829 YP_001412392.1 CDS Plav_1114 NC_009719.1 1224767 1225444 D TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase-related; KEGG: rsh:Rsph17029_2374 phosphatidylserine decarboxylase related protein; phosphatidylserine decarboxylase 1224767..1225444 Parvibaculum lavamentivorans DS-1 5454662 YP_001412393.1 CDS Plav_1115 NC_009719.1 1225444 1226358 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rpb:RPB_3366 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 1225444..1226358 Parvibaculum lavamentivorans DS-1 5455920 YP_001412394.1 CDS Plav_1116 NC_009719.1 1226571 1227878 R KEGG: mlo:mll3672 methyl transferase-like protein; hypothetical protein complement(1226571..1227878) Parvibaculum lavamentivorans DS-1 5453927 YP_001412395.1 CDS Plav_1117 NC_009719.1 1228132 1230429 D KEGG: abo:ABO_1242 hypothetical protein; hypothetical protein 1228132..1230429 Parvibaculum lavamentivorans DS-1 5455663 YP_001412396.1 CDS Plav_1118 NC_009719.1 1230594 1232003 D KEGG: bba:Bd3071 regulatory protein; hypothetical protein 1230594..1232003 Parvibaculum lavamentivorans DS-1 5453346 YP_001412397.1 CDS Plav_1119 NC_009719.1 1232011 1233519 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mmr:Mmar10_0950 multi-sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1232011..1233519) Parvibaculum lavamentivorans DS-1 5455439 YP_001412398.1 CDS Plav_1120 NC_009719.1 1233666 1234472 R TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; KEGG: azo:azo0712 undecaprenol kinase; putative undecaprenol kinase complement(1233666..1234472) Parvibaculum lavamentivorans DS-1 5456072 YP_001412399.1 CDS Plav_1121 NC_009719.1 1234591 1235844 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: noc:Noc_2054 Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase complement(1234591..1235844) Parvibaculum lavamentivorans DS-1 5453392 YP_001412400.1 CDS Plav_1122 NC_009719.1 1236026 1237318 D PFAM: 17 kDa surface antigen; KEGG: rno:681865 hypothetical protein LOC681865; 17 kDa surface antigen 1236026..1237318 Parvibaculum lavamentivorans DS-1 5456092 YP_001412401.1 CDS Plav_1123 NC_009719.1 1237474 1238280 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpb:RPB_2703 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1237474..1238280 Parvibaculum lavamentivorans DS-1 5455065 YP_001412402.1 CDS Plav_1124 NC_009719.1 1238298 1240175 D PFAM: Amidohydrolase 3; KEGG: hne:HNE_3278 amidohydrolase family protein; amidohydrolase 3 1238298..1240175 Parvibaculum lavamentivorans DS-1 5453798 YP_001412403.1 CDS Plav_1125 NC_009719.1 1240223 1240825 D PFAM: regulatory protein TetR; KEGG: hypothetical protein; TetR family transcriptional regulator 1240223..1240825 Parvibaculum lavamentivorans DS-1 5455058 YP_001412404.1 CDS Plav_1126 NC_009719.1 1240832 1241863 R KEGG: eli:ELI_09820 hypothetical protein; hypothetical protein complement(1240832..1241863) Parvibaculum lavamentivorans DS-1 5453790 YP_001412405.1 CDS Plav_1127 NC_009719.1 1241895 1242968 R KEGG: pau:PA14_37170 hypothetical protein; hypothetical protein complement(1241895..1242968) Parvibaculum lavamentivorans DS-1 5455211 YP_001412406.1 CDS Plav_1128 NC_009719.1 1243196 1243612 D KEGG: hne:HNE_1664 hypothetical protein; hypothetical protein 1243196..1243612 Parvibaculum lavamentivorans DS-1 5453684 YP_001412407.1 CDS Plav_1129 NC_009719.1 1243784 1245475 D PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: hne:HNE_2024 PHA-synthase 2; poly-beta-hydroxybutyrate polymerase domain-containing protein 1243784..1245475 Parvibaculum lavamentivorans DS-1 5454265 YP_001412408.1 CDS Plav_1130 NC_009719.1 1245522 1246409 D TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: alpha/beta hydrolase fold; KEGG: eli:ELI_07295 poly(3-hydroxyalkanoate) depolymerase; poly(3-hydroxyalkanoate) depolymerase 1245522..1246409 Parvibaculum lavamentivorans DS-1 5453778 YP_001412409.1 CDS Plav_1131 NC_009719.1 1246514 1248169 D PFAM: sulfatase; KEGG: sulfatase family protein; sulfatase 1246514..1248169 Parvibaculum lavamentivorans DS-1 5455287 YP_001412410.1 CDS Plav_1132 NC_009719.1 1248180 1249136 D PFAM: protein of unknown function DUF323; KEGG: mav:MAV_4458 sulfatase-modifying factor 1; hypothetical protein 1248180..1249136 Parvibaculum lavamentivorans DS-1 5456491 YP_001412411.1 CDS Plav_1133 NC_009719.1 1249185 1250396 D PFAM: ATP-binding region ATPase domain protein; KEGG: rpa:RPA1490 bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB4; putative signal transduction histidine kinase 1249185..1250396 Parvibaculum lavamentivorans DS-1 5454538 YP_001412412.1 CDS Plav_1134 NC_009719.1 1250393 1251034 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: dra:DR0987 DNA-binding response regulator; two component LuxR family transcriptional regulator 1250393..1251034 Parvibaculum lavamentivorans DS-1 5454359 YP_001412413.1 CDS Plav_1135 NC_009719.1 1251156 1252499 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mva:Mvan_3995 conserved hypothetical protein; FAD dependent oxidoreductase 1251156..1252499 Parvibaculum lavamentivorans DS-1 5455251 YP_001412414.1 CDS Plav_1136 NC_009719.1 1252530 1254023 D PFAM: amidohydrolase 2; KEGG: swi:Swit_1765 amidohydrolase 2; amidohydrolase 2 1252530..1254023 Parvibaculum lavamentivorans DS-1 5455858 YP_001412415.1 CDS Plav_1137 NC_009719.1 1254023 1254784 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mva:Mvan_3997 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1254023..1254784 Parvibaculum lavamentivorans DS-1 5453996 YP_001412416.1 CDS Plav_1138 NC_009719.1 1254809 1255213 D PFAM: protein of unknown function DUF1486; Limonene-12-epoxide hydrolase; KEGG: nfa:nfa41920 hypothetical protein; limonene-12-epoxide hydrolase 1254809..1255213 Parvibaculum lavamentivorans DS-1 5454966 YP_001412417.1 CDS Plav_1139 NC_009719.1 1255299 1257473 D PFAM: phospholipase D/Transphosphatidylase; SNARE associated Golgi protein; KEGG: noc:Noc_1912 phospholipase D/transphosphatidylase; hypothetical protein 1255299..1257473 Parvibaculum lavamentivorans DS-1 5454559 YP_001412418.1 CDS Plav_1140 NC_009719.1 1257470 1258165 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mes:Meso_4026 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1257470..1258165 Parvibaculum lavamentivorans DS-1 5454165 YP_001412419.1 CDS Plav_1141 NC_009719.1 1258162 1259034 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: psa:PST_0061 probable hydratase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(1258162..1259034) Parvibaculum lavamentivorans DS-1 5455346 YP_001412420.1 CDS Plav_1142 NC_009719.1 1259249 1260259 D catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation; putrescine carbamoyltransferase 1259249..1260259 Parvibaculum lavamentivorans DS-1 5455156 YP_001412421.1 CDS Plav_1143 NC_009719.1 1260326 1261720 D PFAM: amino acid permease-associated region; KEGG: ppr:PBPRB1917 hypothetical amino acid permease; amino acid permease-associated protein 1260326..1261720 Parvibaculum lavamentivorans DS-1 5456283 YP_001412422.1 CDS Plav_1144 NC_009719.1 1261743 1262852 D PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: lmf:LMOf2365_0047 peptidyl-arginine deiminase-like protein; agmatine deiminase 1261743..1262852 Parvibaculum lavamentivorans DS-1 5455392 YP_001412423.1 CDS Plav_1145 NC_009719.1 1262857 1263759 D reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1262857..1263759 Parvibaculum lavamentivorans DS-1 5455355 YP_001412424.1 CDS Plav_1146 NC_009719.1 1263901 1264740 D TIGRFAM: TonB family protein; KEGG: bbt:BBta_2230 energy transducer; TonB family protein 1263901..1264740 Parvibaculum lavamentivorans DS-1 5455987 YP_001412425.1 CDS Plav_1147 NC_009719.1 1264872 1265966 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: hne:HNE_1415 NADP-dependent oxidoreductase, L4BD family; alcohol dehydrogenase 1264872..1265966 Parvibaculum lavamentivorans DS-1 5455310 YP_001412426.1 CDS Plav_1148 NC_009719.1 1266054 1268819 D PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mpt:Mpe_A0892 ATP-dependent transcriptional regulator-like protein protein; regulatory protein LuxR 1266054..1268819 Parvibaculum lavamentivorans DS-1 5455429 YP_001412427.1 CDS Plav_1149 NC_009719.1 1268936 1270819 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bur:Bcep18194_B1204 hydantoinase/oxoprolinase; hydantoinase/oxoprolinase 1268936..1270819 Parvibaculum lavamentivorans DS-1 5453998 YP_001412428.1 CDS Plav_1150 NC_009719.1 1270831 1271232 D PFAM: Acetone carboxylase gamma subunit; KEGG: bur:Bcep18194_B1205 acetone carboxylase gamma subunit-like; acetone carboxylase subunit gamma 1270831..1271232 Parvibaculum lavamentivorans DS-1 5454388 YP_001412429.1 CDS Plav_1151 NC_009719.1 1271253 1273385 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pna:Pnap_1163 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase 1271253..1273385 Parvibaculum lavamentivorans DS-1 5455280 YP_001412430.1 CDS Plav_1152 NC_009719.1 1273659 1275902 D PFAM: Hydantoinase B/oxoprolinase; KEGG: pna:Pnap_1162 hydantoinase B/oxoprolinase; hydantoinase B/oxoprolinase 1273659..1275902 Parvibaculum lavamentivorans DS-1 5455638 YP_001412431.1 CDS Plav_1153 NC_009719.1 1275907 1276671 D KEGG: bur:Bcep18194_B1208 hypothetical protein; hypothetical protein 1275907..1276671 Parvibaculum lavamentivorans DS-1 5455360 YP_001412432.1 CDS Plav_1154 NC_009719.1 1277249 1279249 R AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase complement(1277249..1279249) Parvibaculum lavamentivorans DS-1 5455001 YP_001412433.1 CDS Plav_1155 NC_009719.1 1279719 1282211 D KEGG: mpt:Mpe_A0397 exporters of the RND superfamily; RND efflux transporter 1279719..1282211 Parvibaculum lavamentivorans DS-1 5453760 YP_001412434.1 CDS Plav_1156 NC_009719.1 1282250 1283629 D KEGG: mpt:Mpe_A0398 hypothetical protein; hypothetical protein 1282250..1283629 Parvibaculum lavamentivorans DS-1 5453628 YP_001412435.1 CDS Plav_1157 NC_009719.1 1283690 1284634 D KEGG: mpt:Mpe_B0584 hypothetical protein; hypothetical protein 1283690..1284634 Parvibaculum lavamentivorans DS-1 5455254 YP_001412436.1 CDS Plav_1158 NC_009719.1 1284696 1286474 D KEGG: mpt:Mpe_A0888 hypothetical protein; hypothetical protein 1284696..1286474 Parvibaculum lavamentivorans DS-1 5455087 YP_001412437.1 CDS Plav_1159 NC_009719.1 1286630 1288006 D KEGG: mpt:Mpe_A0889 hypothetical protein; hypothetical protein 1286630..1288006 Parvibaculum lavamentivorans DS-1 5455054 YP_001412438.1 CDS Plav_1160 NC_009719.1 1288007 1289140 R PFAM: glucose sorbosone dehydrogenase; KEGG: pmy:Pmen_0465 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase complement(1288007..1289140) Parvibaculum lavamentivorans DS-1 5456865 YP_001412439.1 CDS Plav_1161 NC_009719.1 1289221 1289652 D KEGG: pha:PSHAa1706 hypothetical protein ; membrane protein; hypothetical protein 1289221..1289652 Parvibaculum lavamentivorans DS-1 5455279 YP_001412440.1 CDS Plav_1162 NC_009719.1 1289978 1290421 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pmy:Pmen_0673 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1289978..1290421 Parvibaculum lavamentivorans DS-1 5455007 YP_001412441.1 CDS Plav_1163 NC_009719.1 1290418 1291743 D PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pmy:Pmen_0674 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM 1290418..1291743 Parvibaculum lavamentivorans DS-1 5453817 YP_001412442.1 CDS Plav_1164 NC_009719.1 1291855 1292916 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pmy:Pmen_0675 TRAP dicarboxylate transporter-DctP subunit; TRAP C4-dicarboxylate transport system permease subunit DctP 1291855..1292916 Parvibaculum lavamentivorans DS-1 5456621 YP_001412443.1 CDS Plav_1165 NC_009719.1 1293160 1294974 D KEGG: hne:HNE_1286 cyclododecanone monooxygenase; cyclohexanone monooxygenase 1293160..1294974 Parvibaculum lavamentivorans DS-1 5453917 YP_001412444.1 CDS Plav_1166 NC_009719.1 1295411 1296751 D PFAM: Ppx/GppA phosphatase; KEGG: mes:Meso_0471 Ppx/GppA phosphatase; Ppx/GppA phosphatase 1295411..1296751 Parvibaculum lavamentivorans DS-1 5453394 YP_001412445.1 CDS Plav_1167 NC_009719.1 1296763 1297527 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pde:Pden_3990 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 1296763..1297527 Parvibaculum lavamentivorans DS-1 5454527 YP_001412446.1 CDS Plav_1168 NC_009719.1 1297640 1299100 D TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; KEGG: bra:BRADO3165 inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (ImpD); inosine-5'-monophosphate dehydrogenase 1297640..1299100 Parvibaculum lavamentivorans DS-1 5454883 YP_001412447.1 CDS Plav_1169 NC_009719.1 1299129 1300430 D PFAM: Fmu (Sun) domain protein; KEGG: rpd:RPD_2268 Fmu (Sun); Fmu (Sun) domain-containing protein 1299129..1300430 Parvibaculum lavamentivorans DS-1 5456886 YP_001412448.1 CDS Plav_1170 NC_009719.1 1300427 1301014 D KEGG: zmo:ZMO1319 hypothetical protein; hypothetical protein 1300427..1301014 Parvibaculum lavamentivorans DS-1 5453709 YP_001412449.1 CDS guaA NC_009719.1 1300992 1302572 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1300992..1302572 Parvibaculum lavamentivorans DS-1 5455035 YP_001412450.1 CDS Plav_1172 NC_009719.1 1302889 1304145 D PFAM: integrase family protein; KEGG: rpa:RPA2204 integrase; integrase family protein 1302889..1304145 Parvibaculum lavamentivorans DS-1 5453429 YP_001412451.1 CDS Plav_1173 NC_009719.1 1304123 1304407 R PFAM: Prophage CP4-57 regulatory; KEGG: rpa:RPA2205 hypothetical protein; phage transcriptional regulator AlpA complement(1304123..1304407) Parvibaculum lavamentivorans DS-1 5454483 YP_001412452.1 CDS Plav_1174 NC_009719.1 1304571 1305293 R KEGG: dno:DNO_0175 conserved hypothetical protein VrlQ; hypothetical protein complement(1304571..1305293) Parvibaculum lavamentivorans DS-1 5454534 YP_001412453.1 CDS Plav_1175 NC_009719.1 1305301 1307337 R PFAM: PglZ domain protein; KEGG: dno:DNO_0176 conserved hypothetical protein VrlP; alkaline phosphatase domain-containing protein complement(1305301..1307337) Parvibaculum lavamentivorans DS-1 5456920 YP_001412454.1 CDS Plav_1176 NC_009719.1 1307334 1310159 R PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: ace:Acel_0816 helicase domain protein; helicase domain-containing protein complement(1307334..1310159) Parvibaculum lavamentivorans DS-1 5453816 YP_001412455.1 CDS Plav_1177 NC_009719.1 1310163 1312925 R KEGG: ace:Acel_0814 hypothetical protein; hypothetical protein complement(1310163..1312925) Parvibaculum lavamentivorans DS-1 5454810 YP_001412456.1 CDS Plav_1178 NC_009719.1 1312943 1314832 R KEGG: chu:CHU_1497 conserved hypothetical protein; possible histidine kinase; hypothetical protein complement(1312943..1314832) Parvibaculum lavamentivorans DS-1 5454399 YP_001412457.1 CDS Plav_1179 NC_009719.1 1314822 1316684 R PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0482 divergent AAA ATP; putative transcriptional regulator complement(1314822..1316684) Parvibaculum lavamentivorans DS-1 5454873 YP_001412458.1 CDS Plav_1180 NC_009719.1 1316689 1320429 R KEGG: ace:Acel_0812 hypothetical protein; hypothetical protein complement(1316689..1320429) Parvibaculum lavamentivorans DS-1 5454529 YP_001412459.1 CDS Plav_1181 NC_009719.1 1320451 1320948 R KEGG: dno:DNO_0182 conserved hypothetical protein VrlJ; hypothetical protein complement(1320451..1320948) Parvibaculum lavamentivorans DS-1 5455176 YP_001412460.1 CDS Plav_1182 NC_009719.1 1320945 1321163 R TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: vei:Veis_2614 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA complement(1320945..1321163) Parvibaculum lavamentivorans DS-1 5453926 YP_001412461.1 CDS Plav_1183 NC_009719.1 1321422 1322315 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3205 transcriptional regulator, LysR family; LysR family transcriptional regulator 1321422..1322315 Parvibaculum lavamentivorans DS-1 5453928 YP_001412462.1 CDS Plav_1184 NC_009719.1 1322310 1322549 R KEGG: gbe:GbCGDNIH1_1065 hypothetical protein; hypothetical protein complement(1322310..1322549) Parvibaculum lavamentivorans DS-1 5454870 YP_001412463.1 CDS Plav_1185 NC_009719.1 1322551 1323735 R PFAM: conjugation TrbI family protein; KEGG: mes:Meso_0500 conjugation TrbI-like protein; conjugation TrbI family protein complement(1322551..1323735) Parvibaculum lavamentivorans DS-1 5454038 YP_001412464.1 CDS Plav_1186 NC_009719.1 1323732 1324712 R TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mes:Meso_0501 conjugal transfer protein TrbG/VirB9/CagX; P-type conjugative transfer protein TrbG complement(1323732..1324712) Parvibaculum lavamentivorans DS-1 5453388 YP_001412465.1 CDS Plav_1187 NC_009719.1 1324709 1325398 R PFAM: Conjugal transfer protein; KEGG: mes:Meso_0502 conjugal transfer protein; conjugal transfer protein TrbF complement(1324709..1325398) Parvibaculum lavamentivorans DS-1 5454853 YP_001412466.1 CDS Plav_1188 NC_009719.1 1325395 1326756 R type IV secretion VirB6 family; conjugal transfer protein TrbL complement(1325395..1326756) Parvibaculum lavamentivorans DS-1 5453600 YP_001412467.1 CDS Plav_1189 NC_009719.1 1326760 1327044 R KEGG: mes:Meso_2319 hypothetical protein; hypothetical protein complement(1326760..1327044) Parvibaculum lavamentivorans DS-1 5453644 YP_001412468.1 CDS Plav_1190 NC_009719.1 1327055 1327834 R TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pde:Pden_1480 conjugal transfer protein TrbJ; conjugal transfer protein TrbJ complement(1327055..1327834) Parvibaculum lavamentivorans DS-1 5455393 YP_001412469.1 CDS Plav_1191 NC_009719.1 1327840 1330290 R type IV secretion system VirB4 family; conjugal transfer ATPase TrbE complement(1327840..1330290) Parvibaculum lavamentivorans DS-1 5454074 YP_001412470.1 CDS Plav_1192 NC_009719.1 1330305 1330586 R KEGG: mlo:mll9611 conjugal transfer protein trbB; conjugal transfer protein TrbB complement(1330305..1330586) Parvibaculum lavamentivorans DS-1 5454221 YP_001412471.1 CDS Plav_1193 NC_009719.1 1330586 1330918 R PFAM: Conjugal transfer protein TrbC; KEGG: pde:Pden_1483 conjugal transfer protein TrbC; conjugal transfer protein TrbC complement(1330586..1330918) Parvibaculum lavamentivorans DS-1 5455518 YP_001412472.1 CDS Plav_1194 NC_009719.1 1330915 1331898 R TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: mes:Meso_2324 type II secretion system protein E; P-type conjugative transfer ATPase TrbB complement(1330915..1331898) Parvibaculum lavamentivorans DS-1 5456227 YP_001412473.1 CDS Plav_1195 NC_009719.1 1332067 1332516 R KEGG: bja:bll0042 hypothetical protein; hypothetical protein complement(1332067..1332516) Parvibaculum lavamentivorans DS-1 5453501 YP_001412474.1 CDS Plav_1196 NC_009719.1 1332521 1334512 R type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG complement(1332521..1334512) Parvibaculum lavamentivorans DS-1 5454310 YP_001412475.1 CDS Plav_1197 NC_009719.1 1334539 1336278 R KEGG: pde:Pden_1507 hypothetical protein; hypothetical protein complement(1334539..1336278) Parvibaculum lavamentivorans DS-1 5454253 YP_001412476.1 CDS Plav_1198 NC_009719.1 1336522 1337301 R PFAM: Lytic transglycosylase catalytic; KEGG: pde:Pden_3185 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit complement(1336522..1337301) Parvibaculum lavamentivorans DS-1 5453988 YP_001412477.1 CDS Plav_1199 NC_009719.1 1337305 1337724 R PFAM: protein of unknown function DUF736; KEGG: bbt:BBta_7736 hypothetical protein; hypothetical protein complement(1337305..1337724) Parvibaculum lavamentivorans DS-1 5453999 YP_001412478.1 CDS Plav_1200 NC_009719.1 1337721 1338266 R KEGG: mes:Meso_2333 conjugal transfer protein precursor; conjugal transfer protein complement(1337721..1338266) Parvibaculum lavamentivorans DS-1 5454757 YP_001412479.1 CDS Plav_1201 NC_009719.1 1338263 1338784 R KEGG: bbt:BBta_7734 hypothetical protein; hypothetical protein complement(1338263..1338784) Parvibaculum lavamentivorans DS-1 5454048 YP_001412480.1 CDS Plav_1202 NC_009719.1 1338781 1339032 R KEGG: bja:bsl0049 hypothetical protein; hypothetical protein complement(1338781..1339032) Parvibaculum lavamentivorans DS-1 5454140 YP_001412481.1 CDS Plav_1203 NC_009719.1 1339029 1339682 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mes:Meso_2336 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(1339029..1339682) Parvibaculum lavamentivorans DS-1 5455421 YP_001412482.1 CDS Plav_1204 NC_009719.1 1339679 1340839 R KEGG: pde:Pden_1512 replication protein A; replication protein A complement(1339679..1340839) Parvibaculum lavamentivorans DS-1 5454410 YP_001412483.1 CDS Plav_1205 NC_009719.1 1340858 1341139 R KEGG: mes:Meso_3841 putative transcriptional regulator; putative transcriptional regulator complement(1340858..1341139) Parvibaculum lavamentivorans DS-1 5456304 YP_001412484.1 CDS Plav_1206 NC_009719.1 1341276 1341806 R KEGG: pde:Pden_3174 hypothetical protein; hypothetical protein complement(1341276..1341806) Parvibaculum lavamentivorans DS-1 5453767 YP_001412485.1 CDS Plav_1208 NC_009719.1 1342168 1342428 R KEGG: mes:Meso_0527 hypothetical protein; hypothetical protein complement(1342168..1342428) Parvibaculum lavamentivorans DS-1 5454892 YP_001412486.1 CDS Plav_1209 NC_009719.1 1342525 1342791 R KEGG: mes:Meso_0528 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1342525..1342791) Parvibaculum lavamentivorans DS-1 5455088 YP_001412487.1 CDS Plav_1210 NC_009719.1 1342852 1343091 D hypothetical protein 1342852..1343091 Parvibaculum lavamentivorans DS-1 5455513 YP_001412488.1 CDS Plav_1211 NC_009719.1 1343099 1343461 R PFAM: protein of unknown function DUF736; KEGG: mlo:mlr9738 hypothetical protein; hypothetical protein complement(1343099..1343461) Parvibaculum lavamentivorans DS-1 5454034 YP_001412489.1 CDS Plav_1212 NC_009719.1 1343998 1344438 R KEGG: nwi:Nwi_2132 hypothetical protein; hypothetical protein complement(1343998..1344438) Parvibaculum lavamentivorans DS-1 5453546 YP_001412490.1 CDS Plav_1213 NC_009719.1 1344573 1344740 R KEGG: mlo:msr9708 hypothetical protein; hypothetical protein complement(1344573..1344740) Parvibaculum lavamentivorans DS-1 5456891 YP_001412491.1 CDS Plav_1214 NC_009719.1 1345022 1345444 R PFAM: PilT protein domain protein; KEGG: rle:pRL120076 putative plasmid stability protein StbB; PilT domain-containing protein complement(1345022..1345444) Parvibaculum lavamentivorans DS-1 5453710 YP_001412492.1 CDS Plav_1215 NC_009719.1 1345441 1345695 R KEGG: rle:pRL120075 putative plasmid stability protein StbC; putative plasmid stability protein StbC complement(1345441..1345695) Parvibaculum lavamentivorans DS-1 5454437 YP_001412493.1 CDS Plav_1216 NC_009719.1 1345782 1346708 R KEGG: pde:Pden_1531 hypothetical protein; hypothetical protein complement(1345782..1346708) Parvibaculum lavamentivorans DS-1 5455744 YP_001412494.1 CDS Plav_1217 NC_009719.1 1347060 1348094 R KEGG: bbt:BBta_7718 hypothetical protein; hypothetical protein complement(1347060..1348094) Parvibaculum lavamentivorans DS-1 5453838 YP_001412495.1 CDS Plav_1218 NC_009719.1 1348094 1352413 R KEGG: pde:Pden_1533 probable methylase/helicase; putative methylase/helicase complement(1348094..1352413) Parvibaculum lavamentivorans DS-1 5456967 YP_001412496.1 CDS Plav_1219 NC_009719.1 1352572 1352868 R KEGG: pde:Pden_1539 hypothetical protein; hypothetical protein complement(1352572..1352868) Parvibaculum lavamentivorans DS-1 5454698 YP_001412497.1 CDS Plav_1220 NC_009719.1 1352865 1353131 R KEGG: mes:Meso_3821 hypothetical protein; hypothetical protein complement(1352865..1353131) Parvibaculum lavamentivorans DS-1 5456029 YP_001412498.1 CDS Plav_1221 NC_009719.1 1353128 1353544 R KEGG: pde:Pden_1536 hypothetical protein; hypothetical protein complement(1353128..1353544) Parvibaculum lavamentivorans DS-1 5454553 YP_001412499.1 CDS Plav_1222 NC_009719.1 1353675 1355795 R PFAM: ParB domain protein nuclease; KEGG: pde:Pden_1541 ParB-like partition proteins; nuclease complement(1353675..1355795) Parvibaculum lavamentivorans DS-1 5453860 YP_001412500.1 CDS Plav_1223 NC_009719.1 1355957 1356919 R PFAM: domain of unknown function DUF1738; KEGG: bbt:BBta_7394 putative ArdC antirestriction protein; hypothetical protein complement(1355957..1356919) Parvibaculum lavamentivorans DS-1 5457043 YP_001412501.1 CDS Plav_1224 NC_009719.1 1357160 1357753 D KEGG: mlo:mll5901 hypothetical protein; hypothetical protein 1357160..1357753 Parvibaculum lavamentivorans DS-1 5453844 YP_001412502.1 CDS Plav_1225 NC_009719.1 1357746 1358762 D PFAM: Domain of unknown function DUF1814; KEGG: gbe:GbCGDNIH1_1177 hypothetical protein; hypothetical protein 1357746..1358762 Parvibaculum lavamentivorans DS-1 5454924 YP_001412503.1 CDS Plav_1226 NC_009719.1 1358846 1361620 D KEGG: cps:CPS_2955 hypothetical protein; exonuclease V subunit alpha 1358846..1361620 Parvibaculum lavamentivorans DS-1 5454614 YP_001412504.1 CDS Plav_1227 NC_009719.1 1361617 1363533 D hypothetical protein 1361617..1363533 Parvibaculum lavamentivorans DS-1 5454533 YP_001412505.1 CDS Plav_1228 NC_009719.1 1363780 1364793 D PFAM: PfkB domain protein; KEGG: mag:amb4184 sugar kinase; ribokinase-like domain-containing protein 1363780..1364793 Parvibaculum lavamentivorans DS-1 5455090 YP_001412506.1 CDS Plav_1229 NC_009719.1 1364794 1365774 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(1364794..1365774) Parvibaculum lavamentivorans DS-1 5454750 YP_001412507.1 CDS Plav_1230 NC_009719.1 1365774 1366103 R PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: swi:Swit_2565 phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase complement(1365774..1366103) Parvibaculum lavamentivorans DS-1 5455010 YP_001412508.1 CDS Plav_1231 NC_009719.1 1366218 1367309 R PFAM: pentapeptide repeat protein; KEGG: pentapeptide repeat family protein; pentapeptide repeat-containing protein complement(1366218..1367309) Parvibaculum lavamentivorans DS-1 5454612 YP_001412509.1 CDS Plav_1232 NC_009719.1 1367472 1368998 R PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: bra:BRADO2821 conserved hypothetical protein; putative adenylate cyclase with a CHAD domain; CHAD domain-containing protein complement(1367472..1368998) Parvibaculum lavamentivorans DS-1 5453493 YP_001412510.1 CDS Plav_1233 NC_009719.1 1369171 1369932 R TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: bov:BOV_2005 imidazoleglycerol phosphate synthase, cyclase subunit; Imidazole glycerol phosphate synthase cyclase subunit complement(1369171..1369932) Parvibaculum lavamentivorans DS-1 5454523 YP_001412511.1 CDS Plav_1234 NC_009719.1 1369929 1370660 R TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: sme:SMc02570 probable phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase complement(1369929..1370660) Parvibaculum lavamentivorans DS-1 5454832 YP_001412512.1 CDS Plav_1235 NC_009719.1 1370671 1371321 R TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; KEGG: atc:AGR_C_64 amidotransferase HisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit complement(1370671..1371321) Parvibaculum lavamentivorans DS-1 5453498 YP_001412513.1 CDS Plav_1236 NC_009719.1 1371326 1371814 R KEGG: rpc:RPC_0305 hypothetical protein; hypothetical protein complement(1371326..1371814) Parvibaculum lavamentivorans DS-1 5454039 YP_001412514.1 CDS Plav_1237 NC_009719.1 1371917 1372528 R PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: rru:Rru_A3597 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase complement(1371917..1372528) Parvibaculum lavamentivorans DS-1 5453707 YP_001412515.1 CDS Plav_1238 NC_009719.1 1372816 1373430 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mlo:mlr4322 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(1372816..1373430) Parvibaculum lavamentivorans DS-1 5453352 YP_001412516.1 CDS Plav_1239 NC_009719.1 1373564 1374112 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1373564..1374112 Parvibaculum lavamentivorans DS-1 5455091 YP_001412517.1 CDS hslU NC_009719.1 1374160 1375467 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1374160..1375467 Parvibaculum lavamentivorans DS-1 5455278 YP_001412518.1 CDS Plav_1241 NC_009719.1 1375508 1376590 R KEGG: ret:RHE_PE00123 putative ABC transporter, substrate-binding protein; putative ABC transporter substrate-binding protein complement(1375508..1376590) Parvibaculum lavamentivorans DS-1 5455964 YP_001412519.1 CDS Plav_1242 NC_009719.1 1376663 1377721 R PFAM: 2OG-Fe(II) oxygenase; KEGG: bxe:Bxe_B1380 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase complement(1376663..1377721) Parvibaculum lavamentivorans DS-1 5454560 YP_001412520.1 CDS Plav_1243 NC_009719.1 1377718 1378551 R KEGG: psa:PST_1996 hypothetical protein; hypothetical protein complement(1377718..1378551) Parvibaculum lavamentivorans DS-1 5454756 YP_001412521.1 CDS Plav_1244 NC_009719.1 1378640 1379590 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nar:Saro_0599 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1378640..1379590) Parvibaculum lavamentivorans DS-1 5454524 YP_001412522.1 CDS Plav_1245 NC_009719.1 1379785 1380168 R PFAM: helix-turn-helix domain protein; KEGG: bmb:BruAb1_2052 hypothetical protein; XRE family transcriptional regulator complement(1379785..1380168) Parvibaculum lavamentivorans DS-1 5454302 YP_001412523.1 CDS Plav_1246 NC_009719.1 1380165 1380806 R PFAM: Smr protein/MutS2; KEGG: bja:blr0644 hypothetical protein; Smr protein/MutS2 complement(1380165..1380806) Parvibaculum lavamentivorans DS-1 5455061 YP_001412524.1 CDS Plav_1247 NC_009719.1 1380838 1381902 R PFAM: MltA domain protein; 3D domain protein; KEGG: rsp:RSP_1240 putative membrane-bound lytic murein transglycosylase A transmembrane protein; MltA domain-containing protein complement(1380838..1381902) Parvibaculum lavamentivorans DS-1 5455750 YP_001412525.1 CDS Plav_1248 NC_009719.1 1381990 1382733 R PFAM: import inner membrane translocase subunit Tim44; KEGG: nha:Nham_0117 import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 complement(1381990..1382733) Parvibaculum lavamentivorans DS-1 5455163 YP_001412526.1 CDS Plav_1249 NC_009719.1 1382928 1383518 D PFAM: FxsA cytoplasmic membrane protein; KEGG: rru:Rru_A3609 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 1382928..1383518 Parvibaculum lavamentivorans DS-1 5456040 YP_001412527.1 CDS Plav_1250 NC_009719.1 1383608 1384114 D TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: rpa:RPA0302 putative protein-export protein SecB; protein-export protein SecB 1383608..1384114 Parvibaculum lavamentivorans DS-1 5454759 YP_001412528.1 CDS Plav_1251 NC_009719.1 1384119 1384805 R KEGG: rsq:Rsph17025_2673 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(1384119..1384805) Parvibaculum lavamentivorans DS-1 5453745 YP_001412529.1 CDS Plav_1252 NC_009719.1 1384822 1385250 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mva:Mvan_2052 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1384822..1385250) Parvibaculum lavamentivorans DS-1 5456018 YP_001412530.1 CDS Plav_1253 NC_009719.1 1385268 1385894 R TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; KEGG: dephospho-CoA kinase; dephospho-CoA kinase complement(1385268..1385894) Parvibaculum lavamentivorans DS-1 5456518 YP_001412531.1 CDS Plav_1254 NC_009719.1 1385906 1386742 R TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: mag:amb4547 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(1385906..1386742) Parvibaculum lavamentivorans DS-1 5455188 YP_001412532.1 CDS Plav_1255 NC_009719.1 1386739 1387377 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sme:SMc02792 conserved hypothetical protein; maf protein complement(1386739..1387377) Parvibaculum lavamentivorans DS-1 5456461 YP_001412533.1 CDS Plav_1256 NC_009719.1 1387355 1388179 R PFAM: protein of unknown function DUF299; KEGG: hypothetical protein; K09773 hypothetical protein; hypothetical protein complement(1387355..1388179) Parvibaculum lavamentivorans DS-1 5455706 YP_001412534.1 CDS Plav_1257 NC_009719.1 1388750 1389817 D TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: rru:Rru_A3616 uroporphyrinogen decarboxylase HemE; uroporphyrinogen decarboxylase 1388750..1389817 Parvibaculum lavamentivorans DS-1 5455775 YP_001412535.1 CDS Plav_1258 NC_009719.1 1389805 1390851 D PFAM: ferrochelatase; KEGG: mag:amb4551 protoheme ferro-lyase; ferrochelatase 1389805..1390851 Parvibaculum lavamentivorans DS-1 5453461 YP_001412536.1 CDS Plav_1259 NC_009719.1 1390870 1391316 D PFAM: conserved hypothetical protein; KEGG: bja:bll0636 hypothetical protein; hypothetical protein 1390870..1391316 Parvibaculum lavamentivorans DS-1 5454586 YP_001412537.1 CDS rho NC_009719.1 1391664 1392932 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1391664..1392932 Parvibaculum lavamentivorans DS-1 5454245 YP_001412538.1 CDS Plav_1261 NC_009719.1 1393032 1393703 D PFAM: protein of unknown function DUF1457; hypothetical protein 1393032..1393703 Parvibaculum lavamentivorans DS-1 5454675 YP_001412539.1 CDS Plav_1262 NC_009719.1 1393778 1394737 R PFAM: alpha/beta hydrolase fold; KEGG: psa:PST_2434 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein complement(1393778..1394737) Parvibaculum lavamentivorans DS-1 5456148 YP_001412540.1 CDS Plav_1263 NC_009719.1 1394734 1395150 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: hch:HCH_04332 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(1394734..1395150) Parvibaculum lavamentivorans DS-1 5453452 YP_001412541.1 CDS Plav_1264 NC_009719.1 1395147 1396130 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll6137 quinone oxidoreductase; alcohol dehydrogenase complement(1395147..1396130) Parvibaculum lavamentivorans DS-1 5455171 YP_001412542.1 CDS Plav_1265 NC_009719.1 1396149 1396775 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rpa:RPA1283 homoserine/homoserine lactone/threonine efflux protein; lysine exporter protein LysE/YggA complement(1396149..1396775) Parvibaculum lavamentivorans DS-1 5456834 YP_001412543.1 CDS Plav_1266 NC_009719.1 1396989 1397684 R PFAM: dienelactone hydrolase; KEGG: carboxymethylenebutenolidase; carboxymethylenebutenolidase complement(1396989..1397684) Parvibaculum lavamentivorans DS-1 5454027 YP_001412544.1 CDS Plav_1267 NC_009719.1 1397823 1397993 R hypothetical protein complement(1397823..1397993) Parvibaculum lavamentivorans DS-1 5454666 YP_001412545.1 CDS Plav_1268 NC_009719.1 1398181 1399134 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bte:BTH_I0383 glycine cleavage system transcriptional activator; LysR family transcriptional regulator 1398181..1399134 Parvibaculum lavamentivorans DS-1 5455860 YP_001412546.1 CDS Plav_1269 NC_009719.1 1399171 1399764 D PFAM: GCN5-related N-acetyltransferase; KEGG: mpa:MAP0089 phosphinothricin N-acetyltransferase; N-acetyltransferase GCN5 1399171..1399764 Parvibaculum lavamentivorans DS-1 5456833 YP_001412547.1 CDS Plav_1270 NC_009719.1 1399771 1401801 R PFAM: protein of unknown function DUF255; KEGG: nwi:Nwi_0099 protein of unknown function DUF255; hypothetical protein complement(1399771..1401801) Parvibaculum lavamentivorans DS-1 5456726 YP_001412548.1 CDS Plav_1271 NC_009719.1 1401902 1402186 D KEGG: mag:amb4558 hypothetical protein; hypothetical protein 1401902..1402186 Parvibaculum lavamentivorans DS-1 5454788 YP_001412549.1 CDS trmE NC_009719.1 1402213 1403529 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1402213..1403529 Parvibaculum lavamentivorans DS-1 5454475 YP_001412550.1 CDS Plav_1273 NC_009719.1 1403654 1404682 R KEGG: pna:Pnap_2858 insertion element protein; insertion element protein complement(1403654..1404682) Parvibaculum lavamentivorans DS-1 5456332 YP_001412551.1 CDS Plav_1274 NC_009719.1 1404879 1406735 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1404879..1406735 Parvibaculum lavamentivorans DS-1 5455465 YP_001412552.1 CDS Plav_1275 NC_009719.1 1406751 1407431 D TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: mag:amb0003 predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; methyltransferase GidB 1406751..1407431 Parvibaculum lavamentivorans DS-1 5455861 YP_001412553.1 CDS Plav_1276 NC_009719.1 1407409 1408362 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nha:Nham_0103 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 1407409..1408362 Parvibaculum lavamentivorans DS-1 5456580 YP_001412554.1 CDS Plav_1277 NC_009719.1 1408598 1409509 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sil:SPO0004 chromosome partitioning protein ParB; parB-like partition protein 1408598..1409509 Parvibaculum lavamentivorans DS-1 5456273 YP_001412555.1 CDS holA NC_009719.1 1409971 1411014 R required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1409971..1411014) Parvibaculum lavamentivorans DS-1 5456579 YP_001412556.1 CDS Plav_1279 NC_009719.1 1411025 1411561 R KEGG: sal:Sala_3019 hypothetical protein; hypothetical protein complement(1411025..1411561) Parvibaculum lavamentivorans DS-1 5456817 YP_001412557.1 CDS Plav_1280 NC_009719.1 1411554 1414166 R TIGRFAM: leucyl-tRNA synthetase; KEGG: mlo:mll4077 leucyl-tRNA synthetase; leucyl-tRNA synthetase complement(1411554..1414166) Parvibaculum lavamentivorans DS-1 5456455 YP_001412558.1 CDS Plav_1281 NC_009719.1 1414265 1414831 R KEGG: rru:Rru_A3632 hypothetical protein; hypothetical protein complement(1414265..1414831) Parvibaculum lavamentivorans DS-1 5456265 YP_001412559.1 CDS Plav_1282 NC_009719.1 1415430 1416563 D KEGG: rru:Rru_A2211 porin, gram-negative type; porin 1415430..1416563 Parvibaculum lavamentivorans DS-1 5456903 YP_001412560.1 CDS Plav_1283 NC_009719.1 1416697 1417578 D PFAM: sulfotransferase; KEGG: sfr:Sfri_0789 sulfotransferase; sulfotransferase 1416697..1417578 Parvibaculum lavamentivorans DS-1 5454816 YP_001412561.1 CDS Plav_1284 NC_009719.1 1417559 1418167 R PFAM: thiamine monophosphate synthase; KEGG: hypothetical protein; thiamine monophosphate synthase complement(1417559..1418167) Parvibaculum lavamentivorans DS-1 5454786 YP_001412562.1 CDS Plav_1285 NC_009719.1 1418249 1418941 D PFAM: alanine racemase domain protein; KEGG: rpa:RPA0285 protein of unknown function UPF0001; alanine racemase domain-containing protein 1418249..1418941 Parvibaculum lavamentivorans DS-1 5455970 YP_001412563.1 CDS Plav_1286 NC_009719.1 1418938 1419498 R KEGG: mmr:Mmar10_2951 hypothetical protein; hypothetical protein complement(1418938..1419498) Parvibaculum lavamentivorans DS-1 5453842 YP_001412564.1 CDS Plav_1287 NC_009719.1 1419545 1420450 R KEGG: mag:amb0021 hypothetical protein; hypothetical protein complement(1419545..1420450) Parvibaculum lavamentivorans DS-1 5455112 YP_001412565.1 CDS Plav_1288 NC_009719.1 1420508 1422418 D PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: swi:Swit_3141 sulfotransferase; sulfotransferase 1420508..1422418 Parvibaculum lavamentivorans DS-1 5453955 YP_001412566.1 CDS Plav_1289 NC_009719.1 1422390 1423112 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mlo:mlr4237 two-component response regulator; two component transcriptional regulator 1422390..1423112 Parvibaculum lavamentivorans DS-1 5453556 YP_001412567.1 CDS Plav_1290 NC_009719.1 1423113 1423583 R KEGG: pmy:Pmen_2729 thioesterase superfamily protein; thioesterase superfamily protein complement(1423113..1423583) Parvibaculum lavamentivorans DS-1 5454116 YP_001412568.1 CDS Plav_1291 NC_009719.1 1423692 1424186 D PFAM: cyclic nucleotide-binding; KEGG: mlo:mlr3256 hypothetical protein; cyclic nucleotide-binding protein 1423692..1424186 Parvibaculum lavamentivorans DS-1 5455474 YP_001412569.1 CDS Plav_1292 NC_009719.1 1424179 1424658 D PFAM: thioesterase superfamily protein; KEGG: sen:SACE_1886 phenylacetic acid degradation-related protein; thioesterase superfamily protein 1424179..1424658 Parvibaculum lavamentivorans DS-1 5454499 YP_001412570.1 CDS Plav_1293 NC_009719.1 1424649 1425290 R PFAM: regulatory protein TetR; KEGG: cvi:CV2384 probable transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1424649..1425290) Parvibaculum lavamentivorans DS-1 5455183 YP_001412571.1 CDS Plav_1294 NC_009719.1 1425526 1426332 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bmb:BruAb1_1979 Xth-2, exodeoxyribonuclease III; exodeoxyribonuclease III Xth complement(1425526..1426332) Parvibaculum lavamentivorans DS-1 5454849 YP_001412572.1 CDS Plav_1295 NC_009719.1 1426374 1427012 R KEGG: mmr:Mmar10_2947 hypothetical protein; hypothetical protein complement(1426374..1427012) Parvibaculum lavamentivorans DS-1 5453738 YP_001412573.1 CDS Plav_1296 NC_009719.1 1427424 1428806 R PFAM: aminotransferase class-III; KEGG: pfl:PFL_5927 hypothetical protein; putative aminotransferase complement(1427424..1428806) Parvibaculum lavamentivorans DS-1 5454619 YP_001412574.1 CDS Plav_1297 NC_009719.1 1429017 1430408 R PFAM: glutamine synthetase catalytic region; KEGG: rru:Rru_A2079 glutamate--ammonia ligase; glutamate--putrescine ligase complement(1429017..1430408) Parvibaculum lavamentivorans DS-1 5455433 YP_001412575.1 CDS Plav_1298 NC_009719.1 1430335 1431228 R PFAM: peptidase C26; KEGG: bte:BTH_II1945 glutamine amidotransferase, class I; peptidase C26 complement(1430335..1431228) Parvibaculum lavamentivorans DS-1 5454178 YP_001412576.1 CDS Plav_1299 NC_009719.1 1431349 1432080 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rde:RD1_0032 outer membrane lipoprotein carrier protein, putative; outer membrane lipoprotein carrier protein LolA complement(1431349..1432080) Parvibaculum lavamentivorans DS-1 5455990 YP_001412577.1 CDS Plav_1300 NC_009719.1 1432166 1434727 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: atc:AGR_C_5003 cell division protein ftsK homolog; cell division protein FtsK complement(1432166..1434727) Parvibaculum lavamentivorans DS-1 5453668 YP_001412578.1 CDS Plav_1301 NC_009719.1 1434853 1436094 R PFAM: aminotransferase class I and II; KEGG: mag:amb0015 aspartate/tyrosine/aromatic aminotransferase; class I/II aminotransferase complement(1434853..1436094) Parvibaculum lavamentivorans DS-1 5456365 YP_001412579.1 CDS Plav_1302 NC_009719.1 1436323 1437576 R PFAM: Rh family protein/ammonium transporter; KEGG: pmy:Pmen_2999 Rh family protein/ammonium transporter; Rh family protein/ammonium transporter complement(1436323..1437576) Parvibaculum lavamentivorans DS-1 5456101 YP_001412580.1 CDS Plav_1303 NC_009719.1 1438018 1439361 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: jan:Jann_4057 ammonium transporter; ammonium transporter complement(1438018..1439361) Parvibaculum lavamentivorans DS-1 5455791 YP_001412581.1 CDS Plav_1304 NC_009719.1 1439426 1439764 R PFAM: nitrogen regulatory protein P-II; KEGG: sme:SMc03806 probable nitrogen regulatory protein PII 2; nitrogen regulatory protein P-II complement(1439426..1439764) Parvibaculum lavamentivorans DS-1 5455113 YP_001412582.1 CDS Plav_1305 NC_009719.1 1440138 1441472 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: nha:Nham_0084 ammonium transporter; ammonium transporter complement(1440138..1441472) Parvibaculum lavamentivorans DS-1 5454400 YP_001412583.1 CDS Plav_1306 NC_009719.1 1441861 1444077 D PFAM: Pyrrolo-quinoline quinone; KEGG: eli:ELI_14570 alcohol dehydrogenase large subunit; Pyrrolo-quinoline quinone 1441861..1444077 Parvibaculum lavamentivorans DS-1 5454995 YP_001412584.1 CDS Plav_1307 NC_009719.1 1444132 1445487 R PFAM: Amidase; KEGG: rsq:Rsph17025_2898 amidase; amidase complement(1444132..1445487) Parvibaculum lavamentivorans DS-1 5455460 YP_001412585.1 CDS Plav_1308 NC_009719.1 1445583 1446812 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: rde:RD1_0036 2-octaprenyl-6-methoxyphenol hydroxylase; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 1445583..1446812 Parvibaculum lavamentivorans DS-1 5455740 YP_001412586.1 CDS Plav_1309 NC_009719.1 1446809 1447177 R PFAM: protein of unknown function DUF971; KEGG: acr:Acry_2126 protein of unknown function DUF971; hypothetical protein complement(1446809..1447177) Parvibaculum lavamentivorans DS-1 5455850 YP_001412587.1 CDS Plav_1310 NC_009719.1 1447170 1447382 R PFAM: protein of unknown function DUF343; KEGG: mmr:Mmar10_2939 protein of unknown function DUF343; hypothetical protein complement(1447170..1447382) Parvibaculum lavamentivorans DS-1 5456090 YP_001412588.1 CDS Plav_1311 NC_009719.1 1447397 1448080 R PFAM: peptidase S16 lon domain protein; KEGG: nwi:Nwi_0074 peptidase S16; peptidase S16 lon domain-containing protein complement(1447397..1448080) Parvibaculum lavamentivorans DS-1 5454976 YP_001412589.1 CDS Plav_1312 NC_009719.1 1448094 1449002 R TIGRFAM: thioredoxin; PFAM: Tetratricopeptide TPR_2 repeat protein; Thioredoxin domain; SMART: Tetratricopeptide domain protein; KEGG: bja:blr0594 thioredoxin; thioredoxin complement(1448094..1449002) Parvibaculum lavamentivorans DS-1 5453983 YP_001412590.1 CDS Plav_1313 NC_009719.1 1449118 1449597 D hypothetical protein 1449118..1449597 Parvibaculum lavamentivorans DS-1 5456043 YP_001412591.1 CDS Plav_1314 NC_009719.1 1449594 1450142 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: mmr:Mmar10_2937 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein complement(1449594..1450142) Parvibaculum lavamentivorans DS-1 5456924 YP_001412592.1 CDS Plav_1315 NC_009719.1 1450438 1450935 D PFAM: SEC-C motif domain protein; KEGG: mag:amb0006 hypothetical protein; SecC motif-containing protein 1450438..1450935 Parvibaculum lavamentivorans DS-1 5455119 YP_001412593.1 CDS Plav_1316 NC_009719.1 1451028 1452506 D PFAM: major facilitator superfamily MFS_1; KEGG: hypothetical protein; K06902 MFS transporter, UMF1 family; major facilitator superfamily transporter 1451028..1452506 Parvibaculum lavamentivorans DS-1 5456215 YP_001412594.1 CDS Plav_1317 NC_009719.1 1452503 1453927 D PFAM: major facilitator superfamily MFS_1; KEGG: nwi:Nwi_0160 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1452503..1453927 Parvibaculum lavamentivorans DS-1 5455997 YP_001412595.1 CDS Plav_1318 NC_009719.1 1454000 1454683 D KEGG: hne:HNE_3487 hypothetical protein; hypothetical protein 1454000..1454683 Parvibaculum lavamentivorans DS-1 5455216 YP_001412596.1 CDS Plav_1319 NC_009719.1 1454690 1456303 R TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; KEGG: bms:BR1816 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1454690..1456303) Parvibaculum lavamentivorans DS-1 5456027 YP_001412597.1 CDS Plav_1320 NC_009719.1 1456489 1456884 D PFAM: thioesterase superfamily protein; KEGG: rpe:RPE_2404 uncharacterized domain 1; thioesterase superfamily protein 1456489..1456884 Parvibaculum lavamentivorans DS-1 5456472 YP_001412598.1 CDS Plav_1321 NC_009719.1 1456888 1458777 R PFAM: Heparinase II/III family protein; KEGG: bja:blr0580 hypothetical protein; heparinase II/III family protein complement(1456888..1458777) Parvibaculum lavamentivorans DS-1 5454114 YP_001412599.1 CDS Plav_1322 NC_009719.1 1458817 1459479 R PFAM: ribulose-phosphate 3-epimerase; KEGG: nar:Saro_0104 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(1458817..1459479) Parvibaculum lavamentivorans DS-1 5456030 YP_001412600.1 CDS Plav_1323 NC_009719.1 1459619 1460392 D TIGRFAM: methyltransferase FkbM family; KEGG: nmu:Nmul_A0295 methyltransferase FkbM; FkbM family methyltransferase 1459619..1460392 Parvibaculum lavamentivorans DS-1 5454392 YP_001412601.1 CDS Plav_1324 NC_009719.1 1460399 1461145 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: lbl:LBL_1095 methylase/methyltransferase; type 11 methyltransferase complement(1460399..1461145) Parvibaculum lavamentivorans DS-1 5456673 YP_001412602.1 CDS Plav_1325 NC_009719.1 1461382 1462104 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_7491 glycosyl transferase, family 2; type 12 methyltransferase complement(1461382..1462104) Parvibaculum lavamentivorans DS-1 5456687 YP_001412603.1 CDS Plav_1326 NC_009719.1 1462182 1463504 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: rpc:RPC_0025 Fmu (Sun); sun protein complement(1462182..1463504) Parvibaculum lavamentivorans DS-1 5456840 YP_001412604.1 CDS Plav_1327 NC_009719.1 1463553 1464416 R PFAM: peptidase M48 Ste24p; KEGG: rpb:RPB_4635 peptidase M48, Ste24p; peptidase M48 Ste24p complement(1463553..1464416) Parvibaculum lavamentivorans DS-1 5455269 YP_001412605.1 CDS Plav_1328 NC_009719.1 1464527 1464739 D PFAM: protein of unknown function DUF1674; KEGG: mlo:msl4095 hypothetical protein; hypothetical protein 1464527..1464739 Parvibaculum lavamentivorans DS-1 5455625 YP_001412606.1 CDS Plav_1329 NC_009719.1 1464775 1465509 D PFAM: Extensin family protein; KEGG: pst:PSPTO_1513 hypothetical protein; extensin family protein 1464775..1465509 Parvibaculum lavamentivorans DS-1 5455854 YP_001412607.1 CDS Plav_1330 NC_009719.1 1465615 1466094 D PFAM: nuclease (SNase domain protein); KEGG: rpe:RPE_0032 nuclease (SNase domain protein); nuclease 1465615..1466094 Parvibaculum lavamentivorans DS-1 5456479 YP_001412608.1 CDS Plav_1331 NC_009719.1 1466246 1468189 R TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA0211 acetyl-CoA synthetase; acetate--CoA ligase complement(1466246..1468189) Parvibaculum lavamentivorans DS-1 5454434 YP_001412609.1 CDS Plav_1332 NC_009719.1 1468355 1469197 D KEGG: sil:SPOA0441 hypothetical protein; hypothetical protein 1468355..1469197 Parvibaculum lavamentivorans DS-1 5456034 YP_001412610.1 CDS Plav_1333 NC_009719.1 1469254 1469613 R KEGG: rru:Rru_A3032 hypothetical protein; hypothetical protein complement(1469254..1469613) Parvibaculum lavamentivorans DS-1 5453408 YP_001412611.1 CDS Plav_1334 NC_009719.1 1469903 1471168 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hne:HNE_0162 CaiB/BaiF CoA-transferase, family III; L-carnitine dehydratase/bile acid-inducible protein F complement(1469903..1471168) Parvibaculum lavamentivorans DS-1 5456111 YP_001412612.1 CDS Plav_1335 NC_009719.1 1471203 1471646 R PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO1988 hypothetical protein; N-acetyltransferase GCN5 complement(1471203..1471646) Parvibaculum lavamentivorans DS-1 5454462 YP_001412613.1 CDS Plav_1336 NC_009719.1 1471918 1472208 R PFAM: protein of unknown function DUF1330; KEGG: bja:blr0490 hypothetical protein; hypothetical protein complement(1471918..1472208) Parvibaculum lavamentivorans DS-1 5455284 YP_001412614.1 CDS Plav_1337 NC_009719.1 1472310 1473119 D PFAM: Creatininase; KEGG: mmr:Mmar10_0033 creatininase; creatininase 1472310..1473119 Parvibaculum lavamentivorans DS-1 5454777 YP_001412615.1 CDS Plav_1338 NC_009719.1 1473429 1473803 D TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: pnu:Pnuc_0348 death-on-curing family protein; death-on-curing family protein 1473429..1473803 Parvibaculum lavamentivorans DS-1 5455179 YP_001412616.1 CDS Plav_1339 NC_009719.1 1473800 1474105 R PFAM: MazG nucleotide pyrophosphohydrolase; MazG nucleotide pyrophosphohydrolase complement(1473800..1474105) Parvibaculum lavamentivorans DS-1 5456084 YP_001412617.1 CDS Plav_1340 NC_009719.1 1474567 1474917 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: ferredoxin, Rieske 2Fe-2S family; Rieske (2Fe-2S) domain-containing protein complement(1474567..1474917) Parvibaculum lavamentivorans DS-1 5455105 YP_001412618.1 CDS Plav_1341 NC_009719.1 1474914 1475339 R PFAM: protein of unknown function DUF55; KEGG: mes:Meso_3206 protein of unknown function DUF55; hypothetical protein complement(1474914..1475339) Parvibaculum lavamentivorans DS-1 5454044 YP_001412619.1 CDS Plav_1342 NC_009719.1 1475345 1475629 R PFAM: YCII-related; KEGG: bov:BOV_1818 hypothetical protein; hypothetical protein complement(1475345..1475629) Parvibaculum lavamentivorans DS-1 5455838 YP_001412620.1 CDS Plav_1343 NC_009719.1 1475650 1476651 R PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Ketopantoate reductase ApbA/PanE domain protein; KEGG: mmr:Mmar10_0038 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); glycerol-3-phosphate dehydrogenase (NAD(P)(+)) complement(1475650..1476651) Parvibaculum lavamentivorans DS-1 5456637 YP_001412621.1 CDS Plav_1344 NC_009719.1 1476741 1477367 D PFAM: regulatory protein TetR; KEGG: hne:HNE_0134 transcriptional regulator, TetR family; TetR family transcriptional regulator 1476741..1477367 Parvibaculum lavamentivorans DS-1 5454471 YP_001412622.1 CDS Plav_1345 NC_009719.1 1477544 1477735 D hypothetical protein 1477544..1477735 Parvibaculum lavamentivorans DS-1 5455262 YP_001412623.1 CDS Plav_1346 NC_009719.1 1477798 1477923 D hypothetical protein 1477798..1477923 Parvibaculum lavamentivorans DS-1 5456402 YP_001412624.1 CDS Plav_1347 NC_009719.1 1478072 1478971 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: gbe:GbCGDNIH1_2223 caprolactone hydrolase; alpha/beta hydrolase domain-containing protein complement(1478072..1478971) Parvibaculum lavamentivorans DS-1 5454809 YP_001412625.1 CDS Plav_1348 NC_009719.1 1478982 1480073 R TIGRFAM: putative metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; KEGG: mmr:Mmar10_0039 putative metalloendopeptidase, glycoprotease family; metalloendopeptidase glycoprotease family complement(1478982..1480073) Parvibaculum lavamentivorans DS-1 5456543 YP_001412626.1 CDS Plav_1349 NC_009719.1 1480192 1481118 D TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; KEGG: pde:Pden_3630 porphobilinogen deaminase; porphobilinogen deaminase 1480192..1481118 Parvibaculum lavamentivorans DS-1 5454296 YP_001412627.1 CDS Plav_1350 NC_009719.1 1481124 1481837 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: mag:amb4421 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 1481124..1481837 Parvibaculum lavamentivorans DS-1 5454336 YP_001412628.1 CDS Plav_1351 NC_009719.1 1481924 1483219 D KEGG: ret:RHE_CH03906 hypothetical protein; hypothetical protein 1481924..1483219 Parvibaculum lavamentivorans DS-1 5456337 YP_001412629.1 CDS Plav_1352 NC_009719.1 1483227 1484765 D PFAM: HemY domain protein; KEGG: mes:Meso_3199 HemY-like; HemY domain-containing protein 1483227..1484765 Parvibaculum lavamentivorans DS-1 5454468 YP_001412630.1 CDS Plav_1353 NC_009719.1 1484759 1485778 D PFAM: alpha/beta hydrolase fold; KEGG: eli:ELI_02370 hydrolase, alpha/beta hydrolase fold family protein; alpha/beta hydrolase fold protein 1484759..1485778 Parvibaculum lavamentivorans DS-1 5455110 YP_001412631.1 CDS Plav_1354 NC_009719.1 1486057 1487484 D PFAM: homospermidine synthase; KEGG: mag:amb2266 homospermidine synthase; homospermidine synthase 1486057..1487484 Parvibaculum lavamentivorans DS-1 5456361 YP_001412632.1 CDS Plav_1355 NC_009719.1 1487609 1487785 R hypothetical protein complement(1487609..1487785) Parvibaculum lavamentivorans DS-1 5456429 YP_001412633.1 CDS Plav_1356 NC_009719.1 1488138 1488479 D PFAM: nitrogen regulatory protein P-II; KEGG: bcn:Bcen_2252 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1488138..1488479 Parvibaculum lavamentivorans DS-1 5455430 YP_001412634.1 CDS Plav_1357 NC_009719.1 1488486 1489169 R KEGG: rpa:RPA1579 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(1488486..1489169) Parvibaculum lavamentivorans DS-1 5453750 YP_001412635.1 CDS Plav_1358 NC_009719.1 1489424 1490290 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mag:amb0567 signal transduction histidine kinase; histidine kinase 1489424..1490290 Parvibaculum lavamentivorans DS-1 5456391 YP_001412636.1 CDS Plav_1359 NC_009719.1 1490287 1491999 D KEGG: rpa:RPA2027 ATPase:protein of unknown function DUF87; hypothetical protein 1490287..1491999 Parvibaculum lavamentivorans DS-1 5456511 YP_001412637.1 CDS Plav_1360 NC_009719.1 1492110 1492565 D PFAM: protein of unknown function DUF461; KEGG: har:HEAR2923 Conserved hypothetical protein. putative conserved domain; hypothetical protein 1492110..1492565 Parvibaculum lavamentivorans DS-1 5454940 YP_001412638.1 CDS Plav_1361 NC_009719.1 1492871 1494868 D PFAM: protein of unknown function DUF1302; KEGG: cps:CPS_3432 hypothetical protein; hypothetical protein 1492871..1494868 Parvibaculum lavamentivorans DS-1 5454506 YP_001412639.1 CDS Plav_1362 NC_009719.1 1494996 1495319 D PFAM: Excinuclease ABC C subunit domain protein; KEGG: rpe:RPE_1646 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C 1494996..1495319 Parvibaculum lavamentivorans DS-1 5456014 YP_001412640.1 CDS Plav_1363 NC_009719.1 1495912 1497267 D PFAM: protein of unknown function DUF1329; KEGG: cps:CPS_2805 hypothetical protein; hypothetical protein 1495912..1497267 Parvibaculum lavamentivorans DS-1 5455264 YP_001412641.1 CDS Plav_1364 NC_009719.1 1497541 1498620 D KEGG: pfl:PFL_3279 BNR/Asp-box repeat protein; BNR/Asp-box repeat-containing protein 1497541..1498620 Parvibaculum lavamentivorans DS-1 5454454 YP_001412642.1 CDS Plav_1365 NC_009719.1 1498802 1499605 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_1014 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1498802..1499605 Parvibaculum lavamentivorans DS-1 5455317 YP_001412643.1 CDS Plav_1366 NC_009719.1 1499611 1500798 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: swi:Swit_1013 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1499611..1500798 Parvibaculum lavamentivorans DS-1 5456330 YP_001412644.1 CDS Plav_1367 NC_009719.1 1500813 1502006 D PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RS05205 probable transmembrane protein; acyl-CoA dehydrogenase type 2 1500813..1502006 Parvibaculum lavamentivorans DS-1 5455896 YP_001412645.1 CDS Plav_1368 NC_009719.1 1502044 1502829 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; short chain dehydrogenase 1502044..1502829 Parvibaculum lavamentivorans DS-1 5456652 YP_001412646.1 CDS Plav_1369 NC_009719.1 1502838 1503623 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 1502838..1503623 Parvibaculum lavamentivorans DS-1 5455933 YP_001412647.1 CDS Plav_1370 NC_009719.1 1503933 1504235 D PFAM: protein of unknown function YGGT; KEGG: rru:Rru_A3527 protein of unknown function YGGT; hypothetical protein 1503933..1504235 Parvibaculum lavamentivorans DS-1 5455378 YP_001412648.1 CDS Plav_1371 NC_009719.1 1504244 1504570 D PFAM: protein of unknown function DUF167; KEGG: bbt:BBta_0270 hypothetical protein; hypothetical protein 1504244..1504570 Parvibaculum lavamentivorans DS-1 5455948 YP_001412649.1 CDS Plav_1372 NC_009719.1 1504722 1505618 D PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: rpb:RPB_0108 methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase 1504722..1505618 Parvibaculum lavamentivorans DS-1 5454337 YP_001412650.1 CDS Plav_1373 NC_009719.1 1505625 1506641 D PFAM: aldo/keto reductase; KEGG: ath:AT4G33670 aldo-keto reductase/ oxidoreductase; aldo/keto reductase 1505625..1506641 Parvibaculum lavamentivorans DS-1 5456823 YP_001412651.1 CDS Plav_1374 NC_009719.1 1506663 1506920 R KEGG: hypothetical protein; K09982 hypothetical protein; hypothetical protein complement(1506663..1506920) Parvibaculum lavamentivorans DS-1 5453649 YP_001412652.1 CDS Plav_1375 NC_009719.1 1507120 1508595 D PFAM: beta-lactamase; KEGG: bcz:BCZK2932 penicillin-binding protein; beta-lactamase 1507120..1508595 Parvibaculum lavamentivorans DS-1 5456749 YP_001412653.1 CDS Plav_1376 NC_009719.1 1508603 1509133 R PFAM: Inorganic pyrophosphatase; KEGG: atu:Atu2661 inorganic pyrophosphatase; inorganic diphosphatase complement(1508603..1509133) Parvibaculum lavamentivorans DS-1 5456488 YP_001412654.1 CDS Plav_1377 NC_009719.1 1509134 1510366 R PFAM: argininosuccinate synthase; KEGG: rde:RD1_0417 argininosuccinate synthase; argininosuccinate synthase complement(1509134..1510366) Parvibaculum lavamentivorans DS-1 5455880 YP_001412655.1 CDS Plav_1378 NC_009719.1 1510548 1511135 D PFAM: DSBA oxidoreductase; KEGG: eba:ebA2541 2-hydroxychromene-2-carboxylate isomerase family protein; DSBA oxidoreductase 1510548..1511135 Parvibaculum lavamentivorans DS-1 5456322 YP_001412656.1 CDS Plav_1379 NC_009719.1 1511137 1511463 R KEGG: swi:Swit_3983 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(1511137..1511463) Parvibaculum lavamentivorans DS-1 5455672 YP_001412657.1 CDS Plav_1380 NC_009719.1 1511501 1512700 R TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rpe:RPE_0038 radical SAM enzyme, Cfr family; radical SAM protein complement(1511501..1512700) Parvibaculum lavamentivorans DS-1 5454857 YP_001412658.1 CDS Plav_1381 NC_009719.1 1512844 1513416 R KEGG: bov:BOV_0077 hypothetical protein; hypothetical protein complement(1512844..1513416) Parvibaculum lavamentivorans DS-1 5456775 YP_001412659.1 CDS Plav_1382 NC_009719.1 1513695 1514699 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_A2099 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 1513695..1514699 Parvibaculum lavamentivorans DS-1 5456070 YP_001412660.1 CDS Plav_1383 NC_009719.1 1514870 1515592 D KEGG: xac:XAC0836 hypothetical protein; hypothetical protein 1514870..1515592 Parvibaculum lavamentivorans DS-1 5455296 YP_001412661.1 CDS Plav_1384 NC_009719.1 1515673 1516899 D PFAM: beta-lactamase; KEGG: hne:HNE_1031 putative esterase; beta-lactamase 1515673..1516899 Parvibaculum lavamentivorans DS-1 5453716 YP_001412662.1 CDS Plav_1385 NC_009719.1 1516863 1517474 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bja:bll7835 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(1516863..1517474) Parvibaculum lavamentivorans DS-1 5455845 YP_001412663.1 CDS Plav_1386 NC_009719.1 1517499 1517918 R PFAM: protein of unknown function DUF1232; KEGG: hne:HNE_3130 hypothetical protein; hypothetical protein complement(1517499..1517918) Parvibaculum lavamentivorans DS-1 5456838 YP_001412664.1 CDS Plav_1387 NC_009719.1 1518179 1518961 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hne:HNE_3131 oxidoreductase, short chain dehydrogenase/reductase family protein; short-chain dehydrogenase/reductase SDR 1518179..1518961 Parvibaculum lavamentivorans DS-1 5455892 YP_001412665.1 CDS Plav_1388 NC_009719.1 1519038 1519352 R PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rpb:RPB_0099 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase complement(1519038..1519352) Parvibaculum lavamentivorans DS-1 5456773 YP_001412666.1 CDS Plav_1389 NC_009719.1 1519424 1519831 D PFAM: protein of unknown function DUF1025; KEGG: rpd:RPD_0499 protein of unknown function DUF1025; hypothetical protein 1519424..1519831 Parvibaculum lavamentivorans DS-1 5456236 YP_001412667.1 CDS Plav_1390 NC_009719.1 1520049 1520600 R TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: mes:Meso_3349 2'-5' RNA ligase; 2'-5' RNA ligase complement(1520049..1520600) Parvibaculum lavamentivorans DS-1 5456086 YP_001412668.1 CDS Plav_1391 NC_009719.1 1520848 1521888 R PFAM: aldo/keto reductase; KEGG: oxidoreductase, aldo/keto reductase family; aldo/keto reductase complement(1520848..1521888) Parvibaculum lavamentivorans DS-1 5456760 YP_001412669.1 CDS Plav_1392 NC_009719.1 1522101 1522781 R PFAM: lipolytic protein G-D-S-L family; KEGG: rru:Rru_A3650 lipolytic enzyme, G-D-S-L; GDSL family lipase complement(1522101..1522781) Parvibaculum lavamentivorans DS-1 5453929 YP_001412670.1 CDS Plav_1393 NC_009719.1 1522833 1523525 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A3651 ABC transporter component; ABC transporter-like protein 1522833..1523525 Parvibaculum lavamentivorans DS-1 5456347 YP_001412671.1 CDS Plav_1394 NC_009719.1 1523764 1526340 D PFAM: protein of unknown function DUF214; KEGG: rpa:RPA0197 possible ABC transporter permeases; hypothetical protein 1523764..1526340 Parvibaculum lavamentivorans DS-1 5456791 YP_001412672.1 CDS Plav_1395 NC_009719.1 1526512 1527270 D PFAM: protein of unknown function UPF0005; KEGG: mes:Meso_3353 protein of unknown function UPF0005; hypothetical protein 1526512..1527270 Parvibaculum lavamentivorans DS-1 5456857 YP_001412673.1 CDS Plav_1396 NC_009719.1 1527328 1527741 R KEGG: rle:RL4534 hypothetical protein; hypothetical protein complement(1527328..1527741) Parvibaculum lavamentivorans DS-1 5456320 YP_001412674.1 CDS Plav_1397 NC_009719.1 1528308 1529279 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psa:PST_2697 probable ATP-binding component of ABC transporter; ABC transporter-like protein 1528308..1529279 Parvibaculum lavamentivorans DS-1 5456704 YP_001412675.1 CDS Plav_1398 NC_009719.1 1529276 1530010 D PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: psa:PST_2695 ABC transporter, permease protein; cytochrome c-type biogenesis protein CcmB 1529276..1530010 Parvibaculum lavamentivorans DS-1 5456052 YP_001412676.1 CDS Plav_1399 NC_009719.1 1530014 1531954 D KEGG: pmy:Pmen_3071 ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like protein; gliding motility ABC transporter auxiliary protein 1530014..1531954 Parvibaculum lavamentivorans DS-1 5454311 YP_001412677.1 CDS Plav_1400 NC_009719.1 1531958 1533076 D KEGG: mca:MCA1564 hypothetical protein; hypothetical protein 1531958..1533076 Parvibaculum lavamentivorans DS-1 5455921 YP_001412678.1 CDS Plav_1401 NC_009719.1 1533080 1533829 R PFAM: protein of unknown function DUF1223; KEGG: mlo:mlr4337 hypothetical protein; hypothetical protein complement(1533080..1533829) Parvibaculum lavamentivorans DS-1 5455548 YP_001412679.1 CDS Plav_1402 NC_009719.1 1533967 1536771 R TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: sme:SMc03846 probable aconitate hydratase protein; aconitate hydratase 1 complement(1533967..1536771) Parvibaculum lavamentivorans DS-1 5456250 YP_001412680.1 CDS Plav_1403 NC_009719.1 1537499 1538302 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1537499..1538302 Parvibaculum lavamentivorans DS-1 5455942 YP_001412681.1 CDS Plav_1404 NC_009719.1 1538289 1538930 D TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0205 heme exporter protein CcmA; heme exporter protein CcmA 1538289..1538930 Parvibaculum lavamentivorans DS-1 5456130 YP_001412682.1 CDS Plav_1405 NC_009719.1 1538927 1539604 D TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: pde:Pden_1412 heme exporter protein CcmB; heme exporter protein CcmB 1538927..1539604 Parvibaculum lavamentivorans DS-1 5455800 YP_001412683.1 CDS Plav_1406 NC_009719.1 1539688 1540455 D TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: bra:BRADO0390 heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis); heme exporter protein CcmC 1539688..1540455 Parvibaculum lavamentivorans DS-1 5455973 YP_001412684.1 CDS Plav_1407 NC_009719.1 1540457 1540660 D PFAM: Heme exporter protein D (CcmD); Heme exporter protein CcmD 1540457..1540660 Parvibaculum lavamentivorans DS-1 5454261 YP_001412685.1 CDS Plav_1408 NC_009719.1 1540657 1541214 D TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mes:Meso_3362 periplasmic protein thiol--disulphide oxidoreductase DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 1540657..1541214 Parvibaculum lavamentivorans DS-1 5456458 YP_001412686.1 CDS Plav_1409 NC_009719.1 1541236 1541790 R PFAM: regulatory protein MarR; KEGG: mmr:Mmar10_2856 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1541236..1541790) Parvibaculum lavamentivorans DS-1 5454318 YP_001412687.1 CDS Plav_1410 NC_009719.1 1542136 1542774 D PFAM: NUDIX hydrolase; KEGG: hne:HNE_3521 hydrolase, NUDIX family, NudH subfamily; NUDIX hydrolase 1542136..1542774 Parvibaculum lavamentivorans DS-1 5456946 YP_001412688.1 CDS Plav_1411 NC_009719.1 1542843 1544492 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bbr:BB2073 putative sugar transport protein; general substrate transporter 1542843..1544492 Parvibaculum lavamentivorans DS-1 5453715 YP_001412689.1 CDS Plav_1412 NC_009719.1 1544496 1545131 R TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; KEGG: bov:BOV_1862 intracellular septation protein A; intracellular septation protein A complement(1544496..1545131) Parvibaculum lavamentivorans DS-1 5453948 YP_001412690.1 CDS Plav_1413 NC_009719.1 1545196 1546146 R TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; KEGG: mlo:mlr4320 similar to cell division protein FtsY; signal recognition particle-docking protein FtsY complement(1545196..1546146) Parvibaculum lavamentivorans DS-1 5454906 YP_001412691.1 CDS Plav_1414 NC_009719.1 1546143 1547405 R KEGG: mlo:mlr4319 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein complement(1546143..1547405) Parvibaculum lavamentivorans DS-1 5455326 YP_001412692.1 CDS Plav_1415 NC_009719.1 1547402 1548283 R PFAM: diaminopimelate epimerase; KEGG: rpe:RPE_0321 diaminopimelate epimerase; diaminopimelate epimerase complement(1547402..1548283) Parvibaculum lavamentivorans DS-1 5457008 YP_001412693.1 CDS Plav_1416 NC_009719.1 1548358 1549188 D PFAM: LmbE family protein; KEGG: mbo:Mb0331c hypothetical protein; LmbE family protein 1548358..1549188 Parvibaculum lavamentivorans DS-1 5454668 YP_001412694.1 CDS Plav_1417 NC_009719.1 1549176 1549655 D PFAM: CinA domain protein; KEGG: hypothetical protein; CinA domain-containing protein 1549176..1549655 Parvibaculum lavamentivorans DS-1 5455816 YP_001412695.1 CDS Plav_1418 NC_009719.1 1549804 1551318 D TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; KEGG: mes:Meso_3341 signal recognition particle protein; signal recognition particle protein 1549804..1551318 Parvibaculum lavamentivorans DS-1 5456995 YP_001412696.1 CDS Plav_1419 NC_009719.1 1551399 1551824 D PFAM: ribosomal protein S16; KEGG: sal:Sala_2727 ribosomal protein S16; 30S ribosomal protein S16 1551399..1551824 Parvibaculum lavamentivorans DS-1 5456779 YP_001412697.1 CDS rimM NC_009719.1 1551846 1552412 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1551846..1552412 Parvibaculum lavamentivorans DS-1 5456399 YP_001412698.1 CDS Plav_1421 NC_009719.1 1552409 1553116 D TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; KEGG: mlo:mll4287 tRNA (guanine-N1)-methyltransferase; tRNA (guanine-N1)-methyltransferase 1552409..1553116 Parvibaculum lavamentivorans DS-1 5456541 YP_001412699.1 CDS Plav_1422 NC_009719.1 1553218 1553610 D PFAM: ribosomal protein L19; KEGG: rpd:RPD_0506 ribosomal protein L19; 50S ribosomal protein L19 1553218..1553610 Parvibaculum lavamentivorans DS-1 5454537 YP_001412700.1 CDS Plav_1423 NC_009719.1 1553783 1555204 D TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: bra:BRADO0374 3-isopropylmalate dehydratase large subunit 2 (isopropylmalate isomerase 2) (alpha-IPM isomerase 2) (IpmI 2); 3-isopropylmalate dehydratase large subunit 1553783..1555204 Parvibaculum lavamentivorans DS-1 5454674 YP_001412701.1 CDS Plav_1424 NC_009719.1 1555215 1555820 D TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: jan:Jann_0123 3-isopropylmalate dehydratase, small subunit; 3-isopropylmalate dehydratase small subunit 1555215..1555820 Parvibaculum lavamentivorans DS-1 5453416 YP_001412702.1 CDS Plav_1425 NC_009719.1 1555843 1556949 D TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sme:SMc04405 probable 3-isopropylmalate dehydrogenase protein; 3-isopropylmalate dehydrogenase 1555843..1556949 Parvibaculum lavamentivorans DS-1 5454507 YP_001412703.1 CDS Plav_1426 NC_009719.1 1557088 1558167 D TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: bov:BOV_A0831 aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 1557088..1558167 Parvibaculum lavamentivorans DS-1 5456199 YP_001412704.1 CDS Plav_1427 NC_009719.1 1558442 1560595 D TIGRFAM: ammonium transporter; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Rh family protein/ammonium transporter; KEGG: pin:Ping_2650 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); integral membrane sensor signal transduction histidine kinase 1558442..1560595 Parvibaculum lavamentivorans DS-1 5455174 YP_001412705.1 CDS Plav_1428 NC_009719.1 1560682 1561578 D PFAM: HpcH/HpaI aldolase; KEGG: hne:HNE_3534 citrate lyase, beta subunit; citryl-CoA lyase 1560682..1561578 Parvibaculum lavamentivorans DS-1 5456736 YP_001412706.1 CDS Plav_1429 NC_009719.1 1561594 1561761 D hypothetical protein 1561594..1561761 Parvibaculum lavamentivorans DS-1 5456237 YP_001412707.1 CDS Plav_1430 NC_009719.1 1561758 1562807 D PFAM: MaoC domain protein dehydratase; KEGG: rru:Rru_A1201 MaoC-like dehydratase; dehydratase 1561758..1562807 Parvibaculum lavamentivorans DS-1 5454278 YP_001412708.1 CDS Plav_1431 NC_009719.1 1562872 1563456 D hypothetical protein 1562872..1563456 Parvibaculum lavamentivorans DS-1 5456211 YP_001412709.1 CDS Plav_1432 NC_009719.1 1563460 1564101 R PFAM: thioesterase superfamily protein; KEGG: reh:H16_A1529 phenylacetic acid degradation protein PaaI; thioesterase superfamily protein complement(1563460..1564101) Parvibaculum lavamentivorans DS-1 5454033 YP_001412710.1 CDS Plav_1433 NC_009719.1 1564227 1564634 D TIGRFAM: Succinate dehydrogenase cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rpe:RPE_0510 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase cytochrome b556 subunit 1564227..1564634 Parvibaculum lavamentivorans DS-1 5453612 YP_001412711.1 CDS Plav_1434 NC_009719.1 1564634 1565059 D TIGRFAM: Succinate dehydrogenase hydrophobic membrane anchor; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: mlo:mll4265 succinate dehydrogenase cytochrome b small subunit; succinate dehydrogenase hydrophobic membrane anchor 1564634..1565059 Parvibaculum lavamentivorans DS-1 5456721 YP_001412712.1 CDS sdhA NC_009719.1 1565088 1566881 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1565088..1566881 Parvibaculum lavamentivorans DS-1 5454992 YP_001412713.1 CDS Plav_1436 NC_009719.1 1566904 1567683 D TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: mlo:mll4260 succinate dehydrogenase iron-sulfur protein subunit; succinate dehydrogenase and fumarate reductase iron-sulfur protein 1566904..1567683 Parvibaculum lavamentivorans DS-1 5456097 YP_001412714.1 CDS Plav_1437 NC_009719.1 1567958 1568494 R hypothetical protein complement(1567958..1568494) Parvibaculum lavamentivorans DS-1 5456357 YP_001412715.1 CDS Plav_1438 NC_009719.1 1568581 1568847 D hypothetical protein 1568581..1568847 Parvibaculum lavamentivorans DS-1 5455535 YP_001412716.1 CDS Plav_1439 NC_009719.1 1569087 1569383 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: syn:sll1783 hypothetical protein; antibiotic biosynthesis monooxygenase complement(1569087..1569383) Parvibaculum lavamentivorans DS-1 5456554 YP_001412717.1 CDS Plav_1440 NC_009719.1 1569380 1569757 R KEGG: bja:bll2395 hypothetical protein; hypothetical protein complement(1569380..1569757) Parvibaculum lavamentivorans DS-1 5454262 YP_001412718.1 CDS Plav_1441 NC_009719.1 1570243 1570680 D PFAM: regulatory protein ArsR; KEGG: mmr:Mmar10_1348 putative transcriptional regulator, ArsR family; regulatory protein ArsR 1570243..1570680 Parvibaculum lavamentivorans DS-1 5456451 YP_001412719.1 CDS Plav_1442 NC_009719.1 1570680 1571102 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmr:Mmar10_1349 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1570680..1571102 Parvibaculum lavamentivorans DS-1 5455336 YP_001412720.1 CDS Plav_1443 NC_009719.1 1571130 1571645 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mag:amb1828 protein-tyrosine-phosphatase; protein tyrosine phosphatase 1571130..1571645 Parvibaculum lavamentivorans DS-1 5454569 YP_001412721.1 CDS Plav_1444 NC_009719.1 1571645 1572718 D TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: pde:Pden_0214 arsenical-resistance protein; arsenical-resistance protein 1571645..1572718 Parvibaculum lavamentivorans DS-1 5456700 YP_001412722.1 CDS Plav_1445 NC_009719.1 1572792 1573100 R KEGG: pde:Pden_4052 mucin-associated surface protein; hypothetical protein complement(1572792..1573100) Parvibaculum lavamentivorans DS-1 5454615 YP_001412723.1 CDS Plav_1446 NC_009719.1 1573410 1574933 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: methylmalonate-semialdehyde dehydrogenase, putative; methylmalonate-semialdehyde dehydrogenase 1573410..1574933 Parvibaculum lavamentivorans DS-1 5455701 YP_001412724.1 CDS Plav_1447 NC_009719.1 1575025 1575861 D PFAM: N-acetyltransferase; KEGG: mlo:mlr4870 arylamine N-acetyltransferase; arylamine N-acetyltransferase 1575025..1575861 Parvibaculum lavamentivorans DS-1 5453384 YP_001412725.1 CDS Plav_1448 NC_009719.1 1575943 1577064 D PFAM: AFG1-family ATPase; KEGG: mmr:Mmar10_2833 AFG1-family ATPase; AFG1 family ATPase 1575943..1577064 Parvibaculum lavamentivorans DS-1 5454608 YP_001412726.1 CDS Plav_1449 NC_009719.1 1577061 1577711 R hypothetical protein complement(1577061..1577711) Parvibaculum lavamentivorans DS-1 5454907 YP_001412727.1 CDS Plav_1450 NC_009719.1 1578008 1579009 D TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: sme:SMc02479 probable malate dehydrogenase protein; NAD-dependent malate dehydrogenase 1578008..1579009 Parvibaculum lavamentivorans DS-1 5454276 YP_001412728.1 CDS Plav_1451 NC_009719.1 1579191 1580336 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1579191..1580336 Parvibaculum lavamentivorans DS-1 5456959 YP_001412729.1 CDS Plav_1452 NC_009719.1 1580553 1581722 D TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: mag:amb3958 succinyl-CoA synthetase; succinyl-CoA synthetase subunit beta 1580553..1581722 Parvibaculum lavamentivorans DS-1 5455669 YP_001412730.1 CDS Plav_1453 NC_009719.1 1581722 1582597 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1581722..1582597 Parvibaculum lavamentivorans DS-1 5456021 YP_001412731.1 CDS sucA NC_009719.1 1582787 1586038 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1582787..1586038 Parvibaculum lavamentivorans DS-1 5456938 YP_001412732.1 CDS Plav_1455 NC_009719.1 1586079 1587320 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rpa:RPA0188 dihydrolipoamide acetyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 1586079..1587320 Parvibaculum lavamentivorans DS-1 5455593 YP_001412733.1 CDS Plav_1456 NC_009719.1 1587329 1588720 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: bja:bll0449 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 1587329..1588720 Parvibaculum lavamentivorans DS-1 5456904 YP_001412734.1 CDS Plav_1457 NC_009719.1 1588778 1589758 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mag:amb4250 integrase; integrase family protein complement(1588778..1589758) Parvibaculum lavamentivorans DS-1 5454941 YP_001412735.1 CDS Plav_1458 NC_009719.1 1589731 1590471 R PFAM: protein of unknown function DUF484; KEGG: mag:amb4252 hypothetical protein; hypothetical protein complement(1589731..1590471) Parvibaculum lavamentivorans DS-1 5454373 YP_001412736.1 CDS Plav_1459 NC_009719.1 1590539 1591195 R TIGRFAM: putative transaldolase; PFAM: Transaldolase; KEGG: mes:Meso_3212 putative transaldolase; putative transaldolase complement(1590539..1591195) Parvibaculum lavamentivorans DS-1 5453896 YP_001412737.1 CDS Plav_1460 NC_009719.1 1591395 1593590 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1591395..1593590 Parvibaculum lavamentivorans DS-1 5453986 YP_001412738.1 CDS Plav_1461 NC_009719.1 1593618 1594535 D hypothetical protein 1593618..1594535 Parvibaculum lavamentivorans DS-1 5454263 YP_001412739.1 CDS Plav_1462 NC_009719.1 1594786 1595370 D TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: rpd:RPD_0556 ATP synthase F1, delta subunit; ATP synthase F1 subunit delta 1594786..1595370 Parvibaculum lavamentivorans DS-1 5454401 YP_001412740.1 CDS Plav_1463 NC_009719.1 1595370 1596899 D TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: mes:Meso_3216 ATP synthase F1, alpha subunit; ATP synthase F1 subunit alpha 1595370..1596899 Parvibaculum lavamentivorans DS-1 5454975 YP_001412741.1 CDS Plav_1464 NC_009719.1 1596932 1597816 D TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: rle:RL4408 putative ATP synthase gamma chain; ATP synthase F1 subunit gamma 1596932..1597816 Parvibaculum lavamentivorans DS-1 5453812 YP_001412742.1 CDS Plav_1465 NC_009719.1 1597849 1599285 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1597849..1599285 Parvibaculum lavamentivorans DS-1 5454494 YP_001412743.1 CDS Plav_1466 NC_009719.1 1599322 1599720 D TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: mmr:Mmar10_2800 ATP synthase F1, epsilon subunit; ATP synthase F1 subunit epsilon 1599322..1599720 Parvibaculum lavamentivorans DS-1 5455023 YP_001412744.1 CDS Plav_1467 NC_009719.1 1600042 1600866 D KEGG: gbe:GbCGDNIH1_2053 hypothetical protein; hypothetical protein 1600042..1600866 Parvibaculum lavamentivorans DS-1 5455039 YP_001412745.1 CDS Plav_1468 NC_009719.1 1600885 1601832 R KEGG: bov:BOV_1771 hypothetical protein; hypothetical protein complement(1600885..1601832) Parvibaculum lavamentivorans DS-1 5454156 YP_001412746.1 CDS Plav_1469 NC_009719.1 1602004 1603059 D KEGG: bra:BRADO6993 methyl-accepting chemotaxis protein (MCP); hypothetical protein 1602004..1603059 Parvibaculum lavamentivorans DS-1 5456869 YP_001412747.1 CDS Plav_1470 NC_009719.1 1603272 1603799 R PFAM: NUDIX hydrolase; KEGG: mlo:mll3998 probable (di)nucleoside polyphosphate hydrolase; NUDIX hydrolase complement(1603272..1603799) Parvibaculum lavamentivorans DS-1 5453643 YP_001412748.1 CDS Plav_1471 NC_009719.1 1603820 1605100 R PFAM: protein of unknown function DUF610 YibQ; KEGG: nha:Nham_0526 protein of unknown function DUF610, YibQ; hypothetical protein complement(1603820..1605100) Parvibaculum lavamentivorans DS-1 5454249 YP_001412749.1 CDS Plav_1472 NC_009719.1 1605135 1606469 R TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: rpd:RPD_0566 carboxyl-terminal protease; carboxyl-terminal protease complement(1605135..1606469) Parvibaculum lavamentivorans DS-1 5454955 YP_001412750.1 CDS Plav_1473 NC_009719.1 1606470 1607810 R PFAM: peptidase M23B; KEGG: bja:blr0433 hypothetical protein; peptidase M23B complement(1606470..1607810) Parvibaculum lavamentivorans DS-1 5453679 YP_001412751.1 CDS Plav_1474 NC_009719.1 1607803 1609425 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(1607803..1609425) Parvibaculum lavamentivorans DS-1 5454638 YP_001412752.1 CDS Plav_1475 NC_009719.1 1609501 1609983 R PFAM: protein of unknown function DUF163; KEGG: sit:TM1040_2505 protein of unknown function DUF163; hypothetical protein complement(1609501..1609983) Parvibaculum lavamentivorans DS-1 5453914 YP_001412753.1 CDS Plav_1476 NC_009719.1 1610061 1610567 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: mmr:Mmar10_2793 iojap-like protein; iojap family protein complement(1610061..1610567) Parvibaculum lavamentivorans DS-1 5454650 YP_001412754.1 CDS Plav_1477 NC_009719.1 1610646 1611251 R TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: sil:SPO0449 nicotinic acid mononucleotide adenyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(1610646..1611251) Parvibaculum lavamentivorans DS-1 5453821 YP_001412755.1 CDS Plav_1478 NC_009719.1 1611262 1612536 R TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: rpb:RPB_0253 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase complement(1611262..1612536) Parvibaculum lavamentivorans DS-1 5453747 YP_001412756.1 CDS Plav_1479 NC_009719.1 1612622 1613779 R TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: bra:BRADO0431 gamma-glutamate kinase; glutamate 5-kinase complement(1612622..1613779) Parvibaculum lavamentivorans DS-1 5454587 YP_001412757.1 CDS Plav_1480 NC_009719.1 1613776 1614822 R TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: mes:Meso_3458 small GTP-binding protein; GTP-binding protein Obg/CgtA complement(1613776..1614822) Parvibaculum lavamentivorans DS-1 5455257 YP_001412758.1 CDS Plav_1481 NC_009719.1 1614824 1615348 R PFAM: GCN5-related N-acetyltransferase; KEGG: acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(1614824..1615348) Parvibaculum lavamentivorans DS-1 5453467 YP_001412759.1 CDS rpmA NC_009719.1 1615447 1615728 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1615447..1615728) Parvibaculum lavamentivorans DS-1 5456349 YP_001412760.1 CDS Plav_1483 NC_009719.1 1615750 1616061 R PFAM: ribosomal protein L21; KEGG: mes:Meso_3461 ribosomal protein L21; 50S ribosomal protein L21 complement(1615750..1616061) Parvibaculum lavamentivorans DS-1 5456877 YP_001412761.1 CDS Plav_1484 NC_009719.1 1616203 1616967 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pae:PA3857 phosphatidylcholine synthase; phosphatidylcholine synthase complement(1616203..1616967) Parvibaculum lavamentivorans DS-1 5454267 YP_001412762.1 CDS Plav_1485 NC_009719.1 1617277 1617741 D KEGG: dps:DP1390 similar to excinuclease ATPase; excinuclease ATPase-like protein 1617277..1617741 Parvibaculum lavamentivorans DS-1 5453586 YP_001412763.1 CDS Plav_1486 NC_009719.1 1617810 1618571 D KEGG: vpa:VP0897 hypothetical protein; hypothetical protein 1617810..1618571 Parvibaculum lavamentivorans DS-1 5454631 YP_001412764.1 CDS Plav_1487 NC_009719.1 1618558 1619361 D PFAM: phospholipid/glycerol acyltransferase; KEGG: rme:Rmet_4377 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1618558..1619361 Parvibaculum lavamentivorans DS-1 5454077 YP_001412765.1 CDS Plav_1488 NC_009719.1 1619321 1619599 D KEGG: pen:PSEEN0362 acyl carrier protein; acyl carrier protein 1619321..1619599 Parvibaculum lavamentivorans DS-1 5456562 YP_001412766.1 CDS Plav_1489 NC_009719.1 1619586 1619837 D PFAM: phosphopantetheine-binding; KEGG: vvy:VV1079 acyl carrier protein; phosphopantetheine-binding protein 1619586..1619837 Parvibaculum lavamentivorans DS-1 5456724 YP_001412767.1 CDS Plav_1490 NC_009719.1 1619812 1620393 D KEGG: pha:PSHAb0395 hypothetical protein; hypothetical protein 1619812..1620393 Parvibaculum lavamentivorans DS-1 5456963 YP_001412768.1 CDS Plav_1491 NC_009719.1 1620390 1622045 D PFAM: AMP-dependent synthetase and ligase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bvi:Bcep1808_5958 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1620390..1622045 Parvibaculum lavamentivorans DS-1 5456573 YP_001412769.1 CDS Plav_1493 NC_009719.1 1623748 1625334 D PFAM: phenylalanine/histidine ammonia-lyase; KEGG: pen:PSEEN0356 phenylalanine/histidine ammonia-lyase; histidine ammonia-lyase 1623748..1625334 Parvibaculum lavamentivorans DS-1 5455934 YP_001412770.1 CDS Plav_1494 NC_009719.1 1625331 1625750 D PFAM: thioesterase superfamily protein; KEGG: rme:Rmet_4384 thioesterase superfamily; thioesterase superfamily protein 1625331..1625750 Parvibaculum lavamentivorans DS-1 5455633 YP_001412771.1 CDS Plav_1495 NC_009719.1 1625747 1626313 D KEGG: vvy:VV1072 hypothetical protein; hypothetical protein 1625747..1626313 Parvibaculum lavamentivorans DS-1 5456025 YP_001412772.1 CDS Plav_1496 NC_009719.1 1626310 1628532 D KEGG: bam:Bamb_3607 putative lipoprotein transmembrane; putative lipoprotein transmembrane 1626310..1628532 Parvibaculum lavamentivorans DS-1 5454764 YP_001412773.1 CDS Plav_1497 NC_009719.1 1628522 1629742 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: reh:H16_B2509 dehydrogenase (flavoprotein); tryptophan halogenase 1628522..1629742 Parvibaculum lavamentivorans DS-1 5454754 YP_001412774.1 CDS Plav_1498 NC_009719.1 1629733 1630305 D KEGG: eca:ECA4495 putative lipoprotein; hypothetical protein 1629733..1630305 Parvibaculum lavamentivorans DS-1 5455045 YP_001412775.1 CDS Plav_1499 NC_009719.1 1630302 1631474 D PFAM: Beta-ketoacyl synthase; KEGG: bvi:Bcep1808_5964 beta-ketoacyl synthase; beta-ketoacyl synthase 1630302..1631474 Parvibaculum lavamentivorans DS-1 5453540 YP_001412776.1 CDS Plav_1500 NC_009719.1 1631474 1631932 D PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rme:Rmet_4390 hypothetical protein; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 1631474..1631932 Parvibaculum lavamentivorans DS-1 5454028 YP_001412777.1 CDS Plav_1501 NC_009719.1 1631929 1632666 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase, putative; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: vfi:VF0859 3-ketoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 1631929..1632666 Parvibaculum lavamentivorans DS-1 5455976 YP_001412778.1 CDS Plav_1502 NC_009719.1 1632666 1633892 D PFAM: Beta-ketoacyl synthase; KEGG: saz:Sama_3394 3-oxoacyl-(acyl-carrier-protein) synthase II; beta-ketoacyl synthase 1632666..1633892 Parvibaculum lavamentivorans DS-1 5457027 YP_001412779.1 CDS Plav_1503 NC_009719.1 1634049 1635122 D PFAM: secretion protein HlyD family protein; KEGG: abo:ABO_1849 HlyD family secretion protein, putative; secretion protein HlyD family protein 1634049..1635122 Parvibaculum lavamentivorans DS-1 5454243 YP_001412780.1 CDS Plav_1504 NC_009719.1 1635119 1637863 D PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: gsu:GSU2686 ABC transporter, ATP-binding protein; ABC transporter-like protein 1635119..1637863 Parvibaculum lavamentivorans DS-1 5454509 YP_001412781.1 CDS Plav_1505 NC_009719.1 1637867 1638988 D PFAM: ABC-2 type transporter; KEGG: abo:ABO_1847 ABC transporter, ATP-binding protein, permease, putative; ABC transporter 1637867..1638988 Parvibaculum lavamentivorans DS-1 5454051 YP_001412782.1 CDS Plav_1506 NC_009719.1 1638939 1640033 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: mxa:MXAN_5850 NAD dependent epimerase/dehydratase family protein; 3-beta hydroxysteroid dehydrogenase/isomerase complement(1638939..1640033) Parvibaculum lavamentivorans DS-1 5454972 YP_001412783.1 CDS Plav_1507 NC_009719.1 1640098 1640772 D PFAM: regulatory protein TetR; KEGG: gvi:gll0188 TetR family transcriptional regulatory protein; TetR family transcriptional regulator 1640098..1640772 Parvibaculum lavamentivorans DS-1 5454041 YP_001412784.1 CDS Plav_1508 NC_009719.1 1640873 1643038 R TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: aeh:Mlg_1522 catalase/peroxidase HPI; catalase/peroxidase HPI complement(1640873..1643038) Parvibaculum lavamentivorans DS-1 5453652 YP_001412785.1 CDS Plav_1509 NC_009719.1 1643207 1643887 R KEGG: sil:SPO1996 hypothetical protein; hypothetical protein complement(1643207..1643887) Parvibaculum lavamentivorans DS-1 5453826 YP_001412786.1 CDS Plav_1510 NC_009719.1 1644080 1645243 D KEGG: noc:Noc_2091 hypothetical protein; hypothetical protein 1644080..1645243 Parvibaculum lavamentivorans DS-1 5455181 YP_001412787.1 CDS Plav_1511 NC_009719.1 1645527 1651187 D TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: eci:UTI89_C1627 EntS/YbdA MFS transporter; outer membrane autotransporter 1645527..1651187 Parvibaculum lavamentivorans DS-1 5455466 YP_001412788.1 CDS Plav_1512 NC_009719.1 1651295 1651564 R hypothetical protein complement(1651295..1651564) Parvibaculum lavamentivorans DS-1 5455974 YP_001412789.1 CDS Plav_1513 NC_009719.1 1651561 1652100 R hypothetical protein complement(1651561..1652100) Parvibaculum lavamentivorans DS-1 5454927 YP_001412790.1 CDS Plav_1514 NC_009719.1 1652251 1653072 R PFAM: band 7 protein; KEGG: mlo:mll1932 probable stomatin; hypothetical protein complement(1652251..1653072) Parvibaculum lavamentivorans DS-1 5456267 YP_001412791.1 CDS Plav_1515 NC_009719.1 1653084 1654544 R PFAM: protein of unknown function DUF107; KEGG: bja:bll4952 NfeD protein homolog; hypothetical protein complement(1653084..1654544) Parvibaculum lavamentivorans DS-1 5454660 YP_001412792.1 CDS Plav_1516 NC_009719.1 1654840 1655046 D PFAM: protein of unknown function DUF1458; KEGG: hha:Hhal_0546 protein of unknown function DUF1458; hypothetical protein 1654840..1655046 Parvibaculum lavamentivorans DS-1 5453833 YP_001412793.1 CDS Plav_1517 NC_009719.1 1655601 1655789 D KEGG: gur:Gura_2403 hypothetical protein; hypothetical protein 1655601..1655789 Parvibaculum lavamentivorans DS-1 5454102 YP_001412794.1 CDS Plav_1518 NC_009719.1 1655813 1656250 R KEGG: pfo:Pfl_2133 metal dependent phosphohydrolase, HD region; metal dependent phosphohydrolase, HD region complement(1655813..1656250) Parvibaculum lavamentivorans DS-1 5455144 YP_001412795.1 CDS Plav_1519 NC_009719.1 1656382 1657161 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hne:HNE_2812 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 1656382..1657161 Parvibaculum lavamentivorans DS-1 5454294 YP_001412796.1 CDS Plav_1520 NC_009719.1 1657493 1658728 R PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rle:RL4264 hypothetical protein; hypothetical protein complement(1657493..1658728) Parvibaculum lavamentivorans DS-1 5454858 YP_001412797.1 CDS Plav_1521 NC_009719.1 1658779 1659237 D PFAM: protein of unknown function DUF188; KEGG: rru:Rru_A0086 protein of unknown function DUF188; hypothetical protein 1658779..1659237 Parvibaculum lavamentivorans DS-1 5453415 YP_001412798.1 CDS Plav_1522 NC_009719.1 1659215 1659718 R TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: mes:Meso_0379 methionine-R-sulfoxide reductase; methionine-R-sulfoxide reductase complement(1659215..1659718) Parvibaculum lavamentivorans DS-1 5455229 YP_001412799.1 CDS Plav_1523 NC_009719.1 1659722 1660360 R TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: noc:Noc_1776 protein-methionine-S-oxide reductase; peptide methionine sulfoxide reductase complement(1659722..1660360) Parvibaculum lavamentivorans DS-1 5454313 YP_001412800.1 CDS Plav_1524 NC_009719.1 1660544 1661332 D KEGG: swi:Swit_1797 integral membrane-like protein; hypothetical protein 1660544..1661332 Parvibaculum lavamentivorans DS-1 5454603 YP_001412801.1 CDS Plav_1525 NC_009719.1 1661329 1661496 R TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rpc:RPC_0008 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein complement(1661329..1661496) Parvibaculum lavamentivorans DS-1 5453905 YP_001412802.1 CDS Plav_1526 NC_009719.1 1661493 1663709 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mag:amb4368 cation transport ATPase; heavy metal translocating P-type ATPase complement(1661493..1663709) Parvibaculum lavamentivorans DS-1 5456219 YP_001412803.1 CDS Plav_1527 NC_009719.1 1663718 1664233 R PFAM: FixH family protein; KEGG: mag:amb4367 predicted integral membrane protein linked to a cation pump; FixH family protein complement(1663718..1664233) Parvibaculum lavamentivorans DS-1 5456165 YP_001412804.1 CDS Plav_1528 NC_009719.1 1664230 1665771 R TIGRFAM: Cytochrome c oxidase cbb3 type accessory protein FixG; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mmr:Mmar10_1153 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase cbb3 type accessory protein FixG complement(1664230..1665771) Parvibaculum lavamentivorans DS-1 5455826 YP_001412805.1 CDS Plav_1529 NC_009719.1 1665808 1666698 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: rpa:RPA0016 cytochrome-c oxidase fixP chain; cytochrome c oxidase, cbb3-type subunit III complement(1665808..1666698) Parvibaculum lavamentivorans DS-1 5453862 YP_001412806.1 CDS Plav_1530 NC_009719.1 1666695 1666919 R PFAM: Cbb3-type cytochrome oxidase component; KEGG: mmr:Mmar10_1151 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit complement(1666695..1666919) Parvibaculum lavamentivorans DS-1 5453956 YP_001412807.1 CDS Plav_1531 NC_009719.1 1666929 1667660 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: sme:SMa1216 FixO1 c-type cytochrome; cytochrome c oxidase, cbb3-type subunit II complement(1666929..1667660) Parvibaculum lavamentivorans DS-1 5453535 YP_001412808.1 CDS Plav_1532 NC_009719.1 1667673 1669364 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: bja:blr2763 cytochrome-c oxidase; cytochrome c oxidase, cbb3-type subunit I complement(1667673..1669364) Parvibaculum lavamentivorans DS-1 5454544 YP_001412809.1 CDS Plav_1533 NC_009719.1 1669794 1670231 D hypothetical protein 1669794..1670231 Parvibaculum lavamentivorans DS-1 5456046 YP_001412810.1 CDS Plav_1534 NC_009719.1 1670398 1672761 D KEGG: azo:azo2253 probable exporter of RND superfamily; RND superfamily exporter 1670398..1672761 Parvibaculum lavamentivorans DS-1 5454983 YP_001412811.1 CDS Plav_1535 NC_009719.1 1672877 1675969 R PFAM: acriflavin resistance protein; KEGG: AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(1672877..1675969) Parvibaculum lavamentivorans DS-1 5454465 YP_001412812.1 CDS Plav_1536 NC_009719.1 1675966 1677069 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: efflux system protein, putative; RND family efflux transporter MFP subunit complement(1675966..1677069) Parvibaculum lavamentivorans DS-1 5454080 YP_001412813.1 CDS Plav_1537 NC_009719.1 1677156 1677929 D PFAM: regulatory protein TetR; KEGG: aba:Acid345_4024 transcriptional regulator, TetR family; TetR family transcriptional regulator 1677156..1677929 Parvibaculum lavamentivorans DS-1 5454343 YP_001412814.1 CDS Plav_1538 NC_009719.1 1678052 1678720 D PFAM: regulatory protein TetR; KEGG: swi:Swit_2297 transcriptional regulator, TetR family; TetR family transcriptional regulator 1678052..1678720 Parvibaculum lavamentivorans DS-1 5453701 YP_001412815.1 CDS Plav_1539 NC_009719.1 1678737 1679657 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bch:Bcen2424_5775 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1678737..1679657 Parvibaculum lavamentivorans DS-1 5454008 YP_001412816.1 CDS Plav_1540 NC_009719.1 1679681 1680556 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bxe:Bxe_C1055 putative fumarylacetoacetate (FAA) hydrolase; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 1679681..1680556 Parvibaculum lavamentivorans DS-1 5453979 YP_001412817.1 CDS Plav_1541 NC_009719.1 1680587 1682080 D PFAM: monooxygenase FAD-binding; KEGG: nar:Saro_3413 monooxygenase, FAD-binding; FAD-binding monooxygenase 1680587..1682080 Parvibaculum lavamentivorans DS-1 5454517 YP_001412818.1 CDS Plav_1542 NC_009719.1 1682263 1683771 D KEGG: rpa:RPA1496 possible monooxygenase; putative monooxygenase 1682263..1683771 Parvibaculum lavamentivorans DS-1 5455327 YP_001412819.1 CDS Plav_1543 NC_009719.1 1683959 1684666 D KEGG: rpe:RPE_0691 hypothetical protein; hypothetical protein 1683959..1684666 Parvibaculum lavamentivorans DS-1 5454624 YP_001412820.1 CDS Plav_1544 NC_009719.1 1684831 1686087 R PFAM: cytochrome P450; KEGG: cytochrome P450 family protein; cytochrome P450 complement(1684831..1686087) Parvibaculum lavamentivorans DS-1 5454961 YP_001412821.1 CDS Plav_1545 NC_009719.1 1686430 1687602 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1686430..1687602 Parvibaculum lavamentivorans DS-1 5455125 YP_001412822.1 CDS Plav_1546 NC_009719.1 1687725 1688258 D KEGG: acb:A1S_0088 hypothetical protein; hypothetical protein 1687725..1688258 Parvibaculum lavamentivorans DS-1 5455996 YP_001412823.1 CDS Plav_1547 NC_009719.1 1688500 1689228 D PFAM: regulatory protein MerR; KEGG: nar:Saro_1479 transcriptional regulator, MerR family; MerR family transcriptional regulator 1688500..1689228 Parvibaculum lavamentivorans DS-1 5454588 YP_001412824.1 CDS Plav_1548 NC_009719.1 1689236 1690321 R TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: spermidine/putrescine ABC transporter, ATP-binding protein; K02052 spermidine/putrescine transport system ATP-binding protein; spermidine/putrescine ABC transporter ATPase complement(1689236..1690321) Parvibaculum lavamentivorans DS-1 5453641 YP_001412825.1 CDS Plav_1549 NC_009719.1 1690375 1691229 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spermidine/putrescine ABC transporter, permease protein; K02053 spermidine/putrescine transport system permease protein; ornithine carbamoyltransferase complement(1690375..1691229) Parvibaculum lavamentivorans DS-1 5453342 YP_001412826.1 CDS Plav_1550 NC_009719.1 1691226 1692143 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spermidine/putrescine ABC transporter, permease protein; K02054 spermidine/putrescine transport system permease protein; binding-protein-dependent transport system inner membrane protein complement(1691226..1692143) Parvibaculum lavamentivorans DS-1 5454032 YP_001412827.1 CDS Plav_1551 NC_009719.1 1692344 1693435 R PFAM: extracellular solute-binding protein family 1; KEGG: spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein; K02055 spermidine/putrescine transport system substrate-binding protein; extracellular solute-binding protein complement(1692344..1693435) Parvibaculum lavamentivorans DS-1 5454836 YP_001412828.1 CDS Plav_1552 NC_009719.1 1693763 1694509 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential; methionine aminopeptidase 1693763..1694509 Parvibaculum lavamentivorans DS-1 5454128 YP_001412829.1 CDS Plav_1553 NC_009719.1 1694612 1694965 D PFAM: protein of unknown function DUF559; KEGG: nwi:Nwi_2534 protein of unknown function DUF559; hypothetical protein 1694612..1694965 Parvibaculum lavamentivorans DS-1 5456589 YP_001412830.1 CDS Plav_1554 NC_009719.1 1695187 1695381 R KEGG: gsu:GSU2438 prevent-host-death family protein; prevent-host-death family protein complement(1695187..1695381) Parvibaculum lavamentivorans DS-1 5453890 YP_001412831.1 CDS Plav_1555 NC_009719.1 1695624 1695902 D KEGG: vvy:VV2913 predicted membrane protein; membrane protein 1695624..1695902 Parvibaculum lavamentivorans DS-1 5455589 YP_001412832.1 CDS Plav_1556 NC_009719.1 1695906 1696526 R PFAM: NUDIX hydrolase; KEGG: rpb:RPB_4339 NUDIX hydrolase; NUDIX hydrolase complement(1695906..1696526) Parvibaculum lavamentivorans DS-1 5456998 YP_001412833.1 CDS Plav_1557 NC_009719.1 1696803 1697921 D TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: lpp:lpp0986 alanine dehydrogenase; alanine dehydrogenase 1696803..1697921 Parvibaculum lavamentivorans DS-1 5454495 YP_001412834.1 CDS Plav_1558 NC_009719.1 1698063 1698656 D PFAM: Sporulation domain protein; KEGG: gbe:GbCGDNIH1_1259 hypothetical protein; sporulation domain-containing protein 1698063..1698656 Parvibaculum lavamentivorans DS-1 5456144 YP_001412835.1 CDS Plav_1559 NC_009719.1 1698846 1699028 D TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: mmr:Mmar10_1411 ribosomal protein L32; 50S ribosomal protein L32 1698846..1699028 Parvibaculum lavamentivorans DS-1 5453724 YP_001412836.1 CDS Plav_1560 NC_009719.1 1699092 1700183 R KEGG: ajs:Ajs_0454 hypothetical protein; hypothetical protein complement(1699092..1700183) Parvibaculum lavamentivorans DS-1 5456158 YP_001412837.1 CDS Plav_1561 NC_009719.1 1700275 1700667 D KEGG: mmr:Mmar10_2387 hypothetical protein; hypothetical protein 1700275..1700667 Parvibaculum lavamentivorans DS-1 5453938 YP_001412838.1 CDS Plav_1562 NC_009719.1 1700671 1701519 R PFAM: aminotransferase class IV; KEGG: rxy:Rxyl_0760 aminotransferase, class IV; class IV aminotransferase complement(1700671..1701519) Parvibaculum lavamentivorans DS-1 5455870 YP_001412839.1 CDS Plav_1563 NC_009719.1 1701516 1702115 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: gbe:GbCGDNIH1_0821 anthranilate synthase component II; glutamine amidotransferase of anthranilate synthase complement(1701516..1702115) Parvibaculum lavamentivorans DS-1 5456348 YP_001412840.1 CDS Plav_1564 NC_009719.1 1702112 1703521 R TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: rxy:Rxyl_0761 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I complement(1702112..1703521) Parvibaculum lavamentivorans DS-1 5453446 YP_001412841.1 CDS Plav_1565 NC_009719.1 1703564 1704655 R PFAM: alpha/beta hydrolase fold; KEGG: sus:Acid_2544 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1703564..1704655) Parvibaculum lavamentivorans DS-1 5453963 YP_001412842.1 CDS Plav_1566 NC_009719.1 1704882 1705685 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_A3281 short chain dehydrogenase; short chain dehydrogenase 1704882..1705685 Parvibaculum lavamentivorans DS-1 5454223 YP_001412843.1 CDS Plav_1567 NC_009719.1 1705715 1706536 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02669 possible enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1705715..1706536 Parvibaculum lavamentivorans DS-1 5455298 YP_001412844.1 CDS Plav_1568 NC_009719.1 1706546 1706902 D KEGG: hypothetical protein; hypothetical protein 1706546..1706902 Parvibaculum lavamentivorans DS-1 5456006 YP_001412845.1 CDS Plav_1569 NC_009719.1 1706910 1708499 D TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: mlo:mll6984 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1706910..1708499 Parvibaculum lavamentivorans DS-1 5456972 YP_001412846.1 CDS Plav_1570 NC_009719.1 1708511 1708849 R hypothetical protein complement(1708511..1708849) Parvibaculum lavamentivorans DS-1 5456220 YP_001412847.1 CDS Plav_1571 NC_009719.1 1709140 1710891 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; KEGG: bja:blr0951 hypothetical protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1709140..1710891 Parvibaculum lavamentivorans DS-1 5455348 YP_001412848.1 CDS Plav_1572 NC_009719.1 1710899 1711519 R TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: hypothetical protein; polyhydroxyalkonate synthesis repressor PhaR complement(1710899..1711519) Parvibaculum lavamentivorans DS-1 5454970 YP_001412849.1 CDS Plav_1573 NC_009719.1 1711773 1712963 D TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: bra:BRADO0562 acetyl-CoA acetyltransferase with thiolase domain (acetoacetyl-CoA thiolase); acetyl-CoA acetyltransferase 1711773..1712963 Parvibaculum lavamentivorans DS-1 5456342 YP_001412850.1 CDS Plav_1574 NC_009719.1 1713047 1713772 D TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rsh:Rsph17029_2402 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase 1713047..1713772 Parvibaculum lavamentivorans DS-1 5453994 YP_001412851.1 CDS Plav_1575 NC_009719.1 1713845 1714405 R PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rru:Rru_A2514 twin-arginine translocation pathway signal; hypothetical protein complement(1713845..1714405) Parvibaculum lavamentivorans DS-1 5455457 YP_001412852.1 CDS Plav_1576 NC_009719.1 1714493 1715416 R PFAM: polysaccharide deacetylase; KEGG: rpd:RPD_2943 polysaccharide deacetylase; polysaccharide deacetylase complement(1714493..1715416) Parvibaculum lavamentivorans DS-1 5454686 YP_001412853.1 CDS Plav_1577 NC_009719.1 1715504 1715938 R PFAM: protein of unknown function DUF985; KEGG: mag:amb0788 hypothetical protein; hypothetical protein complement(1715504..1715938) Parvibaculum lavamentivorans DS-1 5455245 YP_001412854.1 CDS Plav_1578 NC_009719.1 1715940 1716710 R PFAM: beta-lactamase domain protein; KEGG: sme:SMc00708 putative hydroxyacylglutathione hydrolase (glyoxalase II) (GLX II) protein; hydroxyacylglutathione hydrolase complement(1715940..1716710) Parvibaculum lavamentivorans DS-1 5454441 YP_001412855.1 CDS Plav_1579 NC_009719.1 1716859 1717617 D PFAM: Methyltransferase type 11; KEGG: mag:amb4193 SAM-dependent methyltransferase; type 11 methyltransferase 1716859..1717617 Parvibaculum lavamentivorans DS-1 5456156 YP_001412856.1 CDS Plav_1580 NC_009719.1 1717625 1718251 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: bra:BRADO6460 putative methionine biosynthesis protein (MetW); methionine biosynthesis protein MetW complement(1717625..1718251) Parvibaculum lavamentivorans DS-1 5456524 YP_001412857.1 CDS Plav_1581 NC_009719.1 1718248 1719453 R TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; KEGG: mlo:mlr3538 homoserine O-acetyltransferase; homoserine O-acetyltransferase complement(1718248..1719453) Parvibaculum lavamentivorans DS-1 5454695 YP_001412858.1 CDS Plav_1582 NC_009719.1 1719659 1720558 D TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: rru:Rru_A3265 chorismate mutase; chorismate mutase 1719659..1720558 Parvibaculum lavamentivorans DS-1 5454790 YP_001412859.1 CDS Plav_1583 NC_009719.1 1720548 1721669 D TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: bra:BRADO6463 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 1720548..1721669 Parvibaculum lavamentivorans DS-1 5453504 YP_001412860.1 CDS Plav_1584 NC_009719.1 1721666 1722619 D PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mlo:mll3535 cyclohexadienyl dehydrogenase / prephenate dehydrogenase; prephenate dehydrogenase 1721666..1722619 Parvibaculum lavamentivorans DS-1 5455184 YP_001412861.1 CDS Plav_1585 NC_009719.1 1722613 1723713 R KEGG: mmr:Mmar10_2378 hypothetical protein; hypothetical protein complement(1722613..1723713) Parvibaculum lavamentivorans DS-1 5454875 YP_001412862.1 CDS Plav_1586 NC_009719.1 1723800 1724348 D PFAM: ChaC family protein; KEGG: bra:BRADO6466 putative cation transport protein ChaC-related; ChaC family protein 1723800..1724348 Parvibaculum lavamentivorans DS-1 5453779 YP_001412863.1 CDS Plav_1587 NC_009719.1 1724290 1725498 R PFAM: protein of unknown function DUF1006; KEGG: rsq:Rsph17025_0040 protein of unknown function DUF1006; hypothetical protein complement(1724290..1725498) Parvibaculum lavamentivorans DS-1 5455776 YP_001412864.1 CDS Plav_1588 NC_009719.1 1725532 1725945 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpe:RPE_2873 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1725532..1725945) Parvibaculum lavamentivorans DS-1 5453786 YP_001412865.1 CDS Plav_1589 NC_009719.1 1725961 1726425 R hypothetical protein complement(1725961..1726425) Parvibaculum lavamentivorans DS-1 5453810 YP_001412866.1 CDS Plav_1590 NC_009719.1 1726422 1727327 R PFAM: diacylglycerol kinase catalytic region; KEGG: bra:BRADO2824 conserved hypothetical protein; putative diacylglycerol kinase related protein; diacylglycerol kinase catalytic subunit complement(1726422..1727327) Parvibaculum lavamentivorans DS-1 5453524 YP_001412867.1 CDS Plav_1591 NC_009719.1 1727404 1729719 R TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; KEGG: mag:amb4446 ribonucleotide reductase, alpha subunit; ribonucleoside-diphosphate reductase complement(1727404..1729719) Parvibaculum lavamentivorans DS-1 5453435 YP_001412868.1 CDS Plav_1592 NC_009719.1 1729840 1730613 R PFAM: phospholipid/glycerol acyltransferase; KEGG: mag:amb4445 1-acyl-sn-glycerol-3-phosphate acyltransferase; phospholipid/glycerol acyltransferase complement(1729840..1730613) Parvibaculum lavamentivorans DS-1 5454536 YP_001412869.1 CDS Plav_1593 NC_009719.1 1730610 1731236 R PFAM: protein of unknown function DUF218; KEGG: rle:RL4332 putative transmembrane protein; hypothetical protein complement(1730610..1731236) Parvibaculum lavamentivorans DS-1 5456303 YP_001412870.1 CDS Plav_1594 NC_009719.1 1731349 1732332 R PFAM: protein of unknown function DUF214; KEGG: rpb:RPB_0835 protein of unknown function DUF214; hypothetical protein complement(1731349..1732332) Parvibaculum lavamentivorans DS-1 5455225 YP_001412871.1 CDS Plav_1595 NC_009719.1 1732325 1732984 R TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bov:BOV_1923 cell division ATP-binding protein FtsE; cell division ATP-binding protein FtsE complement(1732325..1732984) Parvibaculum lavamentivorans DS-1 5453800 YP_001412872.1 CDS Plav_1596 NC_009719.1 1733207 1734163 D TIGRFAM: MJ0042 family finger-like protein; KEGG: bbt:BBta_1175 hypothetical protein; Zinc finger-domain-containing protein 1733207..1734163 Parvibaculum lavamentivorans DS-1 5454457 YP_001412873.1 CDS Plav_1597 NC_009719.1 1734168 1734713 D TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: sme:SMc00719 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 1734168..1734713 Parvibaculum lavamentivorans DS-1 5453594 YP_001412874.1 CDS Plav_1598 NC_009719.1 1734719 1735102 D PFAM: response regulator receiver; KEGG: rpa:RPA4738 response regulator receiver (CheY-like protein); response regulator receiver protein 1734719..1735102 Parvibaculum lavamentivorans DS-1 5453475 YP_001412875.1 CDS Plav_1599 NC_009719.1 1735099 1737597 R KEGG: mes:Meso_3097 hypothetical protein; hypothetical protein complement(1735099..1737597) Parvibaculum lavamentivorans DS-1 5455008 YP_001412876.1 CDS Plav_1600 NC_009719.1 1737648 1738916 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mlo:mlr3508 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1737648..1738916) Parvibaculum lavamentivorans DS-1 5456741 YP_001412877.1 CDS Plav_1601 NC_009719.1 1738968 1739201 R hypothetical protein complement(1738968..1739201) Parvibaculum lavamentivorans DS-1 5455437 YP_001412878.1 CDS Plav_1602 NC_009719.1 1739215 1740597 R TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: nha:Nham_3477 argininosuccinate lyase; argininosuccinate lyase complement(1739215..1740597) Parvibaculum lavamentivorans DS-1 5455324 YP_001412879.1 CDS Plav_1603 NC_009719.1 1740652 1741263 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpc:RPC_4876 thioredoxin-like; alkyl hydroperoxide reductase 1740652..1741263 Parvibaculum lavamentivorans DS-1 5454723 YP_001412880.1 CDS Plav_1604 NC_009719.1 1741257 1742087 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nfa:nfa22790 hypothetical protein; type 12 methyltransferase complement(1741257..1742087) Parvibaculum lavamentivorans DS-1 5455042 YP_001412881.1 CDS Plav_1605 NC_009719.1 1742157 1742681 R PFAM: protein of unknown function DUF1457; hypothetical protein complement(1742157..1742681) Parvibaculum lavamentivorans DS-1 5454439 YP_001412882.1 CDS Plav_1606 NC_009719.1 1742747 1743652 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bja:blr1379 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase complement(1742747..1743652) Parvibaculum lavamentivorans DS-1 5454185 YP_001412883.1 CDS Plav_1607 NC_009719.1 1743821 1744762 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: bja:blr1378 electron transfer flavoprotein large subunit; electron transfer flavoprotein subunit alpha complement(1743821..1744762) Parvibaculum lavamentivorans DS-1 5454599 YP_001412884.1 CDS Plav_1608 NC_009719.1 1744759 1745508 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: bbt:BBta_1140 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta complement(1744759..1745508) Parvibaculum lavamentivorans DS-1 5453390 YP_001412885.1 CDS Plav_1609 NC_009719.1 1745745 1746335 R TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: atc:AGR_L_2467 hypothetical protein; ATP--cobalamin adenosyltransferase complement(1745745..1746335) Parvibaculum lavamentivorans DS-1 5455134 YP_001412886.1 CDS Plav_1610 NC_009719.1 1746344 1746874 R PFAM: cytochrome B561; KEGG: lpc:LPC_1005 cytochrome b-561 transmembrane protein; cytochrome B561 complement(1746344..1746874) Parvibaculum lavamentivorans DS-1 5453476 YP_001412887.1 CDS Plav_1611 NC_009719.1 1746929 1747834 R catalyzes the cleavage of carbon-halogen bonds in aliphatic compounds forming a primary alcohol and a halide; haloalkane dehalogenase complement(1746929..1747834) Parvibaculum lavamentivorans DS-1 5454514 YP_001412888.1 CDS Plav_1612 NC_009719.1 1747939 1748130 R PFAM: Hypoxia induced protein conserved region; KEGG: rpc:RPC_4882 hypothetical protein; hypoxia induced protein complement(1747939..1748130) Parvibaculum lavamentivorans DS-1 5455637 YP_001412889.1 CDS Plav_1613 NC_009719.1 1748130 1749836 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rsq:Rsph17025_2567 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(1748130..1749836) Parvibaculum lavamentivorans DS-1 5455219 YP_001412890.1 CDS Plav_1614 NC_009719.1 1750043 1751515 D PFAM: cation transporter; KEGG: pmy:Pmen_1826 potassium uptake protein, TrkH family; cation transporter 1750043..1751515 Parvibaculum lavamentivorans DS-1 5455707 YP_001412891.1 CDS Plav_1615 NC_009719.1 1751522 1752094 R KEGG: bmb:BruAb1_1468 hypothetical protein; hypothetical protein complement(1751522..1752094) Parvibaculum lavamentivorans DS-1 5454110 YP_001412892.1 CDS Plav_1616 NC_009719.1 1752237 1752464 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: xfa:XF1696 hypothetical protein; CopG/DNA-binding domain-containing protein 1752237..1752464 Parvibaculum lavamentivorans DS-1 5455366 YP_001412893.1 CDS Plav_1617 NC_009719.1 1752448 1752726 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: xft:PD1184 toxin-like protein; addiction module antitoxin 1752448..1752726 Parvibaculum lavamentivorans DS-1 5453440 YP_001412894.1 CDS Plav_1618 NC_009719.1 1752733 1753623 R PFAM: beta-lactamase domain protein; KEGG: rpa:RPA0365 beta-lactamase-like; beta-lactamase domain-containing protein complement(1752733..1753623) Parvibaculum lavamentivorans DS-1 5456196 YP_001412895.1 CDS Plav_1619 NC_009719.1 1753746 1754057 D PFAM: regulatory protein ArsR; KEGG: rme:Rmet_2370 transcriptional regulator, ArsR family; regulatory protein ArsR 1753746..1754057 Parvibaculum lavamentivorans DS-1 5454815 YP_001412896.1 CDS Plav_1620 NC_009719.1 1754092 1754613 D PFAM: Rhodanese domain protein; KEGG: rme:Rmet_2371 rhodanese-like protein; rhodanese domain-containing protein 1754092..1754613 Parvibaculum lavamentivorans DS-1 5456629 YP_001412897.1 CDS Plav_1621 NC_009719.1 1754624 1755889 R TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsh:Rsph17029_2620 crotonyl-CoA reductase; crotonyl-CoA reductase complement(1754624..1755889) Parvibaculum lavamentivorans DS-1 5456507 YP_001412898.1 CDS Plav_1622 NC_009719.1 1756080 1757180 D KEGG: mmr:Mmar10_1630 hypothetical protein; hypothetical protein 1756080..1757180 Parvibaculum lavamentivorans DS-1 5454522 YP_001412899.1 CDS Plav_1623 NC_009719.1 1757264 1759084 R KEGG: hne:HNE_1286 cyclododecanone monooxygenase; cyclohexanone monooxygenase complement(1757264..1759084) Parvibaculum lavamentivorans DS-1 5456301 YP_001412900.1 CDS Plav_1624 NC_009719.1 1759261 1760508 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rpd:RPD_1248 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(1759261..1760508) Parvibaculum lavamentivorans DS-1 5454525 YP_001412901.1 CDS Plav_1625 NC_009719.1 1760695 1762698 D TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; KEGG: rru:Rru_A3062 methylmalonyl-CoA mutase-like; methylmalonyl-CoA mutase large subunit 1760695..1762698 Parvibaculum lavamentivorans DS-1 5456327 YP_001412902.1 CDS Plav_1626 NC_009719.1 1762901 1763194 D hypothetical protein 1762901..1763194 Parvibaculum lavamentivorans DS-1 5454578 YP_001412903.1 CDS Plav_1627 NC_009719.1 1763191 1764318 D hypothetical protein 1763191..1764318 Parvibaculum lavamentivorans DS-1 5455285 YP_001412904.1 CDS Plav_1628 NC_009719.1 1764327 1764998 D hypothetical protein 1764327..1764998 Parvibaculum lavamentivorans DS-1 5455925 YP_001412905.1 CDS Plav_1629 NC_009719.1 1765067 1766014 D PFAM: Auxin Efflux Carrier; KEGG: rsh:Rsph17029_2331 auxin efflux carrier; auxin efflux carrier 1765067..1766014 Parvibaculum lavamentivorans DS-1 5453436 YP_001412906.1 CDS Plav_1630 NC_009719.1 1766017 1767069 R PFAM: acyltransferase 3; KEGG: nha:Nham_0454 acyltransferase 3; acyltransferase 3 complement(1766017..1767069) Parvibaculum lavamentivorans DS-1 5456297 YP_001412907.1 CDS Plav_1631 NC_009719.1 1767181 1768083 R PFAM: glutamyl-tRNA synthetase class Ic; KEGG: sme:SMc00735 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase complement(1767181..1768083) Parvibaculum lavamentivorans DS-1 5454166 YP_001412908.1 CDS Plav_1632 NC_009719.1 1768156 1768830 D PFAM: phospholipase/Carboxylesterase; KEGG: acr:Acry_1326 phospholipase/carboxylesterase; phospholipase/carboxylesterase 1768156..1768830 Parvibaculum lavamentivorans DS-1 5456670 YP_001412909.1 CDS Plav_1633 NC_009719.1 1768939 1769499 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mlo:mll3477 hypothetical protein; HNH endonuclease 1768939..1769499 Parvibaculum lavamentivorans DS-1 5456785 YP_001412910.1 CDS Plav_1634 NC_009719.1 1769506 1770087 R PFAM: Ubiquinone biosynthesis protein COQ7; KEGG: mmr:Mmar10_2348 ubiquinone biosynthesis protein COQ7; ubiquinone biosynthesis protein COQ7 complement(1769506..1770087) Parvibaculum lavamentivorans DS-1 5456323 YP_001412911.1 CDS Plav_1635 NC_009719.1 1770087 1770617 R PFAM: Disulphide bond formation protein DsbB; KEGG: rpc:RPC_0627 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB complement(1770087..1770617) Parvibaculum lavamentivorans DS-1 5454805 YP_001412912.1 CDS Plav_1636 NC_009719.1 1771204 1771848 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: bpe:BP2156 hypothetical protein; NADPH-dependent FMN reductase 1771204..1771848 Parvibaculum lavamentivorans DS-1 5453670 YP_001412913.1 CDS Plav_1637 NC_009719.1 1771871 1773247 D PFAM: glutamine synthetase catalytic region; KEGG: psa:PST_1993 glutamate--ammonia ligase; glutamine synthetase 1771871..1773247 Parvibaculum lavamentivorans DS-1 5456884 YP_001412914.1 CDS Plav_1638 NC_009719.1 1773273 1774031 D PFAM: Creatininase; KEGG: mva:Mvan_1602 creatininase; creatininase 1773273..1774031 Parvibaculum lavamentivorans DS-1 5453811 YP_001412915.1 CDS Plav_1639 NC_009719.1 1774065 1774712 D PFAM: regulatory protein TetR; KEGG: mfa:Mfla_2564 transcriptional regulator, TetR family; TetR family transcriptional regulator 1774065..1774712 Parvibaculum lavamentivorans DS-1 5453754 YP_001412916.1 CDS Plav_1640 NC_009719.1 1774720 1775400 R PFAM: regulatory protein TetR; KEGG: transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1774720..1775400) Parvibaculum lavamentivorans DS-1 5454708 YP_001412917.1 CDS Plav_1641 NC_009719.1 1775508 1776302 D KEGG: hne:HNE_2082 hypothetical protein; hypothetical protein 1775508..1776302 Parvibaculum lavamentivorans DS-1 5456961 YP_001412918.1 CDS Plav_1642 NC_009719.1 1776396 1776755 D PFAM: arsenate reductase and related; KEGG: rpe:RPE_3058 hypothetical protein; arsenate reductase-like protein 1776396..1776755 Parvibaculum lavamentivorans DS-1 5454444 YP_001412919.1 CDS Plav_1643 NC_009719.1 1776752 1777348 D PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC1441 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1776752..1777348 Parvibaculum lavamentivorans DS-1 5456572 YP_001412920.1 CDS Plav_1644 NC_009719.1 1777339 1777641 R PFAM: SirA family protein; KEGG: rsh:Rsph17029_0807 SirA family protein; SirA family protein complement(1777339..1777641) Parvibaculum lavamentivorans DS-1 5453623 YP_001412921.1 CDS Plav_1645 NC_009719.1 1777848 1779650 D activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase 1777848..1779650 Parvibaculum lavamentivorans DS-1 5454932 YP_001412922.1 CDS Plav_1646 NC_009719.1 1779717 1780934 R PFAM: luciferase family protein; KEGG: mes:Meso_3721 luciferase-like; luciferase family protein complement(1779717..1780934) Parvibaculum lavamentivorans DS-1 5456258 YP_001412923.1 CDS Plav_1647 NC_009719.1 1780998 1781645 R PFAM: regulatory protein TetR; KEGG: bpd:BURPS668_A2057 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1780998..1781645) Parvibaculum lavamentivorans DS-1 5454397 YP_001412924.1 CDS Plav_1648 NC_009719.1 1781812 1782621 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_1957 putative 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX; short-chain dehydrogenase/reductase SDR 1781812..1782621 Parvibaculum lavamentivorans DS-1 5455916 YP_001412925.1 CDS Plav_1649 NC_009719.1 1782626 1783693 R PFAM: Hyaluronidase; KEGG: maq:Maqu_3474 hyaluronidase; hyaluronidase complement(1782626..1783693) Parvibaculum lavamentivorans DS-1 5455807 YP_001412926.1 CDS Plav_1650 NC_009719.1 1783695 1784627 R KEGG: hne:HNE_3384 hypothetical protein; hypothetical protein complement(1783695..1784627) Parvibaculum lavamentivorans DS-1 5454338 YP_001412927.1 CDS Plav_1651 NC_009719.1 1784636 1785421 R PFAM: Glutathione S-transferase domain; KEGG: hne:HNE_2391 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(1784636..1785421) Parvibaculum lavamentivorans DS-1 5453516 YP_001412928.1 CDS Plav_1652 NC_009719.1 1785527 1786507 R PFAM: beta-lactamase domain protein; KEGG: hne:HNE_3461 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(1785527..1786507) Parvibaculum lavamentivorans DS-1 5454214 YP_001412929.1 CDS Plav_1653 NC_009719.1 1786759 1788078 D KEGG: sru:SRU_1321 hypothetical protein; hypothetical protein 1786759..1788078 Parvibaculum lavamentivorans DS-1 5453419 YP_001412930.1 CDS Plav_1654 NC_009719.1 1788075 1788383 D hypothetical protein 1788075..1788383 Parvibaculum lavamentivorans DS-1 5455293 YP_001412931.1 CDS Plav_1655 NC_009719.1 1788399 1789103 D hypothetical protein 1788399..1789103 Parvibaculum lavamentivorans DS-1 5454369 YP_001412932.1 CDS Plav_1656 NC_009719.1 1789100 1790236 D KEGG: sru:SRU_0279 hypothetical protein; hypothetical protein 1789100..1790236 Parvibaculum lavamentivorans DS-1 5456723 YP_001412933.1 CDS Plav_1657 NC_009719.1 1790240 1791079 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr2256 hypothetical oxidoreductase; short-chain dehydrogenase/reductase SDR complement(1790240..1791079) Parvibaculum lavamentivorans DS-1 5454851 YP_001412934.1 CDS Plav_1658 NC_009719.1 1791076 1791639 R PFAM: Carboxymuconolactone decarboxylase; KEGG: vei:Veis_0111 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(1791076..1791639) Parvibaculum lavamentivorans DS-1 5453902 YP_001412935.1 CDS Plav_1659 NC_009719.1 1791643 1792194 R PFAM: Carboxymuconolactone decarboxylase; KEGG: vei:Veis_0111 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(1791643..1792194) Parvibaculum lavamentivorans DS-1 5455089 YP_001412936.1 CDS Plav_1660 NC_009719.1 1792416 1793987 D PFAM: AMP-dependent synthetase and ligase; KEGG: hne:HNE_3427 feruloyl-CoA synthetase; AMP-dependent synthetase and ligase 1792416..1793987 Parvibaculum lavamentivorans DS-1 5456527 YP_001412937.1 CDS Plav_1661 NC_009719.1 1794077 1795933 D PFAM: AMP-dependent synthetase and ligase; KEGG: feruloyl-CoA synthase; acyl-CoA synthetase 1794077..1795933 Parvibaculum lavamentivorans DS-1 5455333 YP_001412938.1 CDS Plav_1662 NC_009719.1 1795936 1796484 D PFAM: protein of unknown function DUF924; KEGG: xcb:XC_0794 hypothetical protein; hypothetical protein 1795936..1796484 Parvibaculum lavamentivorans DS-1 5454204 YP_001412939.1 CDS Plav_1663 NC_009719.1 1796556 1797284 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7157 putative glucose 1-dehydrogenase; short-chain dehydrogenase/reductase SDR 1796556..1797284 Parvibaculum lavamentivorans DS-1 5455749 YP_001412940.1 CDS Plav_1664 NC_009719.1 1797468 1797674 D KEGG: mmr:Mmar10_2307 hypothetical protein; hypothetical protein 1797468..1797674 Parvibaculum lavamentivorans DS-1 5455738 YP_001412941.1 CDS Plav_1665 NC_009719.1 1797760 1798701 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: reu:Reut_B5462 esterase/lipase/thioesterase; alpha/beta hydrolase domain-containing protein 1797760..1798701 Parvibaculum lavamentivorans DS-1 5454820 YP_001412942.1 CDS Plav_1666 NC_009719.1 1798698 1799477 R TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aeh:Mlg_2555 HAD-superfamily subfamily IIA hydrolase like protein; HAD family hydrolase complement(1798698..1799477) Parvibaculum lavamentivorans DS-1 5455011 YP_001412943.1 CDS Plav_1667 NC_009719.1 1799601 1801187 D PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA4829 putative crotonobetaine/carnitine-CoA ligase; AMP-dependent synthetase and ligase 1799601..1801187 Parvibaculum lavamentivorans DS-1 5456291 YP_001412944.1 CDS Plav_1668 NC_009719.1 1801247 1802899 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mag:amb3695 sulfate permease and related transporters; sulfate transporter 1801247..1802899 Parvibaculum lavamentivorans DS-1 5454528 YP_001412945.1 CDS Plav_1669 NC_009719.1 1802904 1804574 R PFAM: FAD linked oxidase domain protein; KEGG: lic:LIC11674 alkylglycerone-phosphate synthase; alkylglycerone-phosphate synthase complement(1802904..1804574) Parvibaculum lavamentivorans DS-1 5454284 YP_001412946.1 CDS Plav_1670 NC_009719.1 1804600 1805550 R PFAM: diacylglycerol kinase catalytic region; KEGG: mxa:MXAN_4683 conserved hypothetical protein TIGR00147; diacylglycerol kinase catalytic subunit complement(1804600..1805550) Parvibaculum lavamentivorans DS-1 5454910 YP_001412947.1 CDS Plav_1671 NC_009719.1 1805547 1807277 R PFAM: FAD dependent oxidoreductase; KEGG: lic:LIC11675 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase complement(1805547..1807277) Parvibaculum lavamentivorans DS-1 5454568 YP_001412948.1 CDS Plav_1672 NC_009719.1 1807427 1808239 D PFAM: regulatory protein LuxR; KEGG: swi:Swit_1997 regulatory protein, LuxR; regulatory protein LuxR 1807427..1808239 Parvibaculum lavamentivorans DS-1 5454345 YP_001412949.1 CDS Plav_1673 NC_009719.1 1808236 1808883 R PFAM: DSBA oxidoreductase; KEGG: rpa:RPA1011 DsbA oxidoreductase; DSBA oxidoreductase complement(1808236..1808883) Parvibaculum lavamentivorans DS-1 5454721 YP_001412950.1 CDS Plav_1674 NC_009719.1 1809034 1809942 D PFAM: alpha/beta hydrolase fold; KEGG: eli:ELI_11645 probable hydrolase; alpha/beta hydrolase fold protein 1809034..1809942 Parvibaculum lavamentivorans DS-1 5454855 YP_001412951.1 CDS Plav_1675 NC_009719.1 1809947 1810852 D PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_2222 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1809947..1810852 Parvibaculum lavamentivorans DS-1 5454718 YP_001412952.1 CDS Plav_1676 NC_009719.1 1811058 1811774 D PFAM: ThiJ/PfpI domain protein; KEGG: reh:H16_B2498 intracellular protease/amidase; ThiJ/PfpI domain-containing protein 1811058..1811774 Parvibaculum lavamentivorans DS-1 5454592 YP_001412953.1 CDS Plav_1677 NC_009719.1 1812053 1813123 D PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_2222 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1812053..1813123 Parvibaculum lavamentivorans DS-1 5456257 YP_001412954.1 CDS Plav_1678 NC_009719.1 1813289 1814056 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_1599 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1813289..1814056) Parvibaculum lavamentivorans DS-1 5453557 YP_001412955.1 CDS Plav_1679 NC_009719.1 1814357 1816207 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:blr1158 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(1814357..1816207) Parvibaculum lavamentivorans DS-1 5454740 YP_001412956.1 CDS Plav_1680 NC_009719.1 1816651 1818966 D KEGG: nmu:Nmul_A0143 ATP-dependent endonuclease of the OLD family-like; hypothetical protein 1816651..1818966 Parvibaculum lavamentivorans DS-1 5454658 YP_001412957.1 CDS Plav_1681 NC_009719.1 1819086 1819646 D PFAM: protein of unknown function DUF1457; KEGG: sme:SMc01000 hypothetical protein; hypothetical protein 1819086..1819646 Parvibaculum lavamentivorans DS-1 5455002 YP_001412958.1 CDS Plav_1682 NC_009719.1 1819665 1820159 R hypothetical protein complement(1819665..1820159) Parvibaculum lavamentivorans DS-1 5453799 YP_001412959.1 CDS Plav_1683 NC_009719.1 1820510 1820974 D PFAM: thioesterase superfamily protein; KEGG: eli:ELI_05475 hypothetical protein; thioesterase superfamily protein 1820510..1820974 Parvibaculum lavamentivorans DS-1 5456296 YP_001412960.1 CDS Plav_1684 NC_009719.1 1821237 1821791 D PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: sfr:Sfri_0734 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein 1821237..1821791 Parvibaculum lavamentivorans DS-1 5455050 YP_001412961.1 CDS Plav_1685 NC_009719.1 1821908 1822717 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpb:RPB_1685 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1821908..1822717) Parvibaculum lavamentivorans DS-1 5456593 YP_001412962.1 CDS Plav_1686 NC_009719.1 1822791 1823129 R hypothetical protein complement(1822791..1823129) Parvibaculum lavamentivorans DS-1 5453607 YP_001412963.1 CDS Plav_1687 NC_009719.1 1823278 1823688 D KEGG: mmr:Mmar10_0815 hypothetical protein; hypothetical protein 1823278..1823688 Parvibaculum lavamentivorans DS-1 5454768 YP_001412964.1 CDS Plav_1688 NC_009719.1 1823670 1824626 R PFAM: glycosyl transferase family 9; KEGG: pub:SAR11_1206 heptosyltransferase family protein; glycosyl transferase family protein complement(1823670..1824626) Parvibaculum lavamentivorans DS-1 5456206 YP_001412965.1 CDS Plav_1689 NC_009719.1 1824641 1825360 R PFAM: peptidase S24 S26A and S26B; SMART: helix-turn-helix domain protein; KEGG: ppd:Ppro_0272 putative phage repressor; putative phage repressor complement(1824641..1825360) Parvibaculum lavamentivorans DS-1 5455862 YP_001412966.1 CDS Plav_1690 NC_009719.1 1826026 1826673 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: mag:amb3889 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; two component LuxR family transcriptional regulator 1826026..1826673 Parvibaculum lavamentivorans DS-1 5455400 YP_001412967.1 CDS Plav_1691 NC_009719.1 1826727 1827545 D PFAM: nuclease (SNase domain protein); KEGG: mmr:Mmar10_2298 nuclease (SNase domain protein); nuclease 1826727..1827545 Parvibaculum lavamentivorans DS-1 5455033 YP_001412968.1 CDS Plav_1692 NC_009719.1 1827524 1829038 D PFAM: peptidase M48 Ste24p; KEGG: mag:amb0300 putative Zn-dependent protease; peptidase M48 Ste24p 1827524..1829038 Parvibaculum lavamentivorans DS-1 5453432 YP_001412969.1 CDS Plav_1693 NC_009719.1 1829044 1829940 R TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: hne:HNE_3450 putative alternative sigma factor RpoH; RNA polymerase sigma-32 subunit RpoH complement(1829044..1829940) Parvibaculum lavamentivorans DS-1 5454148 YP_001412970.1 CDS Plav_1694 NC_009719.1 1830149 1831201 R PFAM: transcription factor CarD; KEGG: rpd:RPD_0278 transcription factor CarD; CarD family transcriptional regulator complement(1830149..1831201) Parvibaculum lavamentivorans DS-1 5454346 YP_001412971.1 CDS Plav_1695 NC_009719.1 1831646 1831984 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mlo:mlr3855 ferredoxin II; 4Fe-4S ferredoxin complement(1831646..1831984) Parvibaculum lavamentivorans DS-1 5453465 YP_001412972.1 CDS Plav_1696 NC_009719.1 1832048 1832512 R PFAM: protein of unknown function DUF1332; KEGG: rru:Rru_A0076 protein of unknown function DUF1332; hypothetical protein complement(1832048..1832512) Parvibaculum lavamentivorans DS-1 5455888 YP_001412973.1 CDS Plav_1697 NC_009719.1 1832569 1832964 R PFAM: RNA-binding S4 domain protein; KEGG: rde:RD1_1823 heat shock protein, putative; RNA-binding S4 domain-containing protein complement(1832569..1832964) Parvibaculum lavamentivorans DS-1 5455980 YP_001412974.1 CDS Plav_1698 NC_009719.1 1832970 1835963 R PFAM: helicase domain protein; KEGG: rpa:RPA0491 possible MgpS, ATP-dependent helicase; helicase domain-containing protein complement(1832970..1835963) Parvibaculum lavamentivorans DS-1 5456469 YP_001412975.1 CDS Plav_1699 NC_009719.1 1836318 1837613 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: hne:HNE_0809 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 1836318..1837613 Parvibaculum lavamentivorans DS-1 5453431 YP_001412976.1 CDS Plav_1700 NC_009719.1 1837643 1840039 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rru:Rru_A3213 PAS/PAC sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase complement(1837643..1840039) Parvibaculum lavamentivorans DS-1 5454366 YP_001412977.1 CDS Plav_1701 NC_009719.1 1840194 1840886 R hypothetical protein complement(1840194..1840886) Parvibaculum lavamentivorans DS-1 5456423 YP_001412978.1 CDS Plav_1702 NC_009719.1 1841160 1843316 D MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 1841160..1843316 Parvibaculum lavamentivorans DS-1 5454542 YP_001412979.1 CDS Plav_1703 NC_009719.1 1843365 1843844 D hypothetical protein 1843365..1843844 Parvibaculum lavamentivorans DS-1 5454169 YP_001412980.1 CDS Plav_1704 NC_009719.1 1843848 1844741 R KEGG: rpe:RPE_0128 hypothetical protein; hypothetical protein complement(1843848..1844741) Parvibaculum lavamentivorans DS-1 5456533 YP_001412981.1 CDS Plav_1705 NC_009719.1 1844871 1845911 D functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 1844871..1845911 Parvibaculum lavamentivorans DS-1 5456642 YP_001412982.1 CDS Plav_1706 NC_009719.1 1846023 1846313 D PFAM: ribosomal protein L28; KEGG: ret:RHE_CH03816 50S ribosomal protein L28; 50S ribosomal protein L28 1846023..1846313 Parvibaculum lavamentivorans DS-1 5454355 YP_001412983.1 CDS Plav_1707 NC_009719.1 1846469 1847149 D KEGG: bov:BOV_1938 hypothetical protein; hypothetical protein 1846469..1847149 Parvibaculum lavamentivorans DS-1 5455390 YP_001412984.1 CDS Plav_1708 NC_009719.1 1847067 1848224 R KEGG: rpc:RPC_0541 hypothetical protein; hypothetical protein complement(1847067..1848224) Parvibaculum lavamentivorans DS-1 5454251 YP_001412985.1 CDS Plav_1709 NC_009719.1 1848347 1849759 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mlo:mll4906 multidrug efflux protein (NorM); MATE efflux family protein complement(1848347..1849759) Parvibaculum lavamentivorans DS-1 5455073 YP_001412986.1 CDS Plav_1710 NC_009719.1 1849833 1851014 R PFAM: major facilitator superfamily MFS_1; KEGG: rle:RL2426 putative transmembrane protein; major facilitator superfamily transporter complement(1849833..1851014) Parvibaculum lavamentivorans DS-1 5453404 YP_001412987.1 CDS Plav_1711 NC_009719.1 1851167 1851799 D PFAM: Helix-turn-helix type 11 domain protein; KEGG: aha:AHA_3605 hypothetical protein; putative transcriptional regulator 1851167..1851799 Parvibaculum lavamentivorans DS-1 5454825 YP_001412988.1 CDS Plav_1712 NC_009719.1 1851796 1853712 R KEGG: bbt:BBta_7564 aerobic cobaltochelatase CobT subunit (cobalamin biosynthesis); TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A; cobalt chelatase large subunit complement(1851796..1853712) Parvibaculum lavamentivorans DS-1 5454727 YP_001412989.1 CDS Plav_1713 NC_009719.1 1853750 1854745 R TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities AAA_5; KEGG: mes:Meso_3069 cobalt chelatase, pCobS small subunit; cobalt chelatase small subunit complement(1853750..1854745) Parvibaculum lavamentivorans DS-1 5456008 YP_001412990.1 CDS Plav_1714 NC_009719.1 1854886 1855479 R PFAM: heat shock protein DnaJ domain protein; KEGG: bov:BOV_1947 DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(1854886..1855479) Parvibaculum lavamentivorans DS-1 5456188 YP_001412991.1 CDS Plav_1715 NC_009719.1 1855650 1855928 D PFAM: BolA family protein; KEGG: rpc:RPC_0535 BolA-like protein; BolA family protein 1855650..1855928 Parvibaculum lavamentivorans DS-1 5455560 YP_001412992.1 CDS Plav_1716 NC_009719.1 1855931 1857220 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: bov:BOV_1949 CBS domain protein; hypothetical protein complement(1855931..1857220) Parvibaculum lavamentivorans DS-1 5454065 YP_001412993.1 CDS Plav_1717 NC_009719.1 1857222 1858340 R PFAM: 3-dehydroquinate synthase; KEGG: sil:SPO1635 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(1857222..1858340) Parvibaculum lavamentivorans DS-1 5453973 YP_001412994.1 CDS Plav_1718 NC_009719.1 1858333 1858959 R PFAM: shikimate kinase; KEGG: rpe:RPE_0143 shikimate kinase; shikimate kinase complement(1858333..1858959) Parvibaculum lavamentivorans DS-1 5455314 YP_001412995.1 CDS Plav_1719 NC_009719.1 1859326 1861281 D KEGG: mag:amb3928 antifreeze glycopeptide polyprotein precursor; hypothetical protein 1859326..1861281 Parvibaculum lavamentivorans DS-1 5456004 YP_001412996.1 CDS Plav_1720 NC_009719.1 1861299 1862258 D TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sme:SMc00691 probable integrase/recombinase DNA recombination protein; tyrosine recombinase XerD 1861299..1862258 Parvibaculum lavamentivorans DS-1 5455675 YP_001412997.1 CDS Plav_1721 NC_009719.1 1862255 1863154 R TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-70 ECF type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bte:BTH_I0997 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 factor complement(1862255..1863154) Parvibaculum lavamentivorans DS-1 5454000 YP_001412998.1 CDS Plav_1722 NC_009719.1 1863151 1863705 R KEGG: sus:Acid_3604 hypothetical protein; hypothetical protein complement(1863151..1863705) Parvibaculum lavamentivorans DS-1 5456302 YP_001412999.1 CDS Plav_1723 NC_009719.1 1863724 1864149 R KEGG: hypothetical protein; hypothetical protein complement(1863724..1864149) Parvibaculum lavamentivorans DS-1 5456565 YP_001413000.1 CDS Plav_1724 NC_009719.1 1864388 1865347 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: rpb:RPB_0532 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 1864388..1865347 Parvibaculum lavamentivorans DS-1 5456538 YP_001413001.1 CDS Plav_1725 NC_009719.1 1865436 1865969 D PFAM: protein of unknown function DUF1457; hypothetical protein 1865436..1865969 Parvibaculum lavamentivorans DS-1 5453977 YP_001413002.1 CDS Plav_1726 NC_009719.1 1865966 1867732 R PFAM: Citrate transporter; TrkA-C domain protein; KEGG: mhu:Mhun_0633 TrkA-C; citrate transporter complement(1865966..1867732) Parvibaculum lavamentivorans DS-1 5455958 YP_001413003.1 CDS Plav_1727 NC_009719.1 1867729 1868952 R PFAM: alpha/beta hydrolase fold; Epoxide hydrolase domain protein; KEGG: bcl:ABC1387 epoxide hydrolase 1; epocide hydrolase domain-containing protein complement(1867729..1868952) Parvibaculum lavamentivorans DS-1 5456412 YP_001413004.1 CDS Plav_1728 NC_009719.1 1868961 1870151 R PFAM: Epoxide hydrolase domain protein; KEGG: hne:HNE_2052 epoxide hydrolase; epocide hydrolase domain-containing protein complement(1868961..1870151) Parvibaculum lavamentivorans DS-1 5453904 YP_001413005.1 CDS Plav_1729 NC_009719.1 1870294 1871655 D PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_3455 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1870294..1871655 Parvibaculum lavamentivorans DS-1 5453852 YP_001413006.1 CDS Plav_1730 NC_009719.1 1871726 1874533 R TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: bra:BRADO0590 preprotein translocase SecA subunit; preprotein translocase subunit SecA complement(1871726..1874533) Parvibaculum lavamentivorans DS-1 5453608 YP_001413007.1 CDS Plav_1731 NC_009719.1 1874685 1875548 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rpa:RPA0511 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1874685..1875548 Parvibaculum lavamentivorans DS-1 5455626 YP_001413008.1 CDS Plav_1732 NC_009719.1 1875584 1877029 D TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; KEGG: rru:Rru_A0394 amino-acid N-acetyltransferase; arginine biosynthesis bifunctional protein ArgJ 1875584..1877029 Parvibaculum lavamentivorans DS-1 5454935 YP_001413009.1 CDS Plav_1733 NC_009719.1 1877116 1877550 D TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: rle:RL4294 putative NTP pyrophosphohydrolase; mutator MutT protein 1877116..1877550 Parvibaculum lavamentivorans DS-1 5456378 YP_001413010.1 CDS Plav_1734 NC_009719.1 1877579 1877740 D PFAM: Flp/Fap pilin component; Flp/Fap pilin component 1877579..1877740 Parvibaculum lavamentivorans DS-1 5453719 YP_001413011.1 CDS Plav_1735 NC_009719.1 1877737 1878699 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hypothetical protein; type 11 methyltransferase complement(1877737..1878699) Parvibaculum lavamentivorans DS-1 5455272 YP_001413012.1 CDS Plav_1736 NC_009719.1 1878748 1879524 D PFAM: phosphoribosyltransferase; KEGG: bbt:BBta_7594 putative competence protein F (ComF); phosphoribosyltransferase 1878748..1879524 Parvibaculum lavamentivorans DS-1 5455621 YP_001413013.1 CDS Plav_1737 NC_009719.1 1879582 1879839 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: jan:Jann_0296 glutaredoxin, GrxC; glutaredoxin 3 1879582..1879839 Parvibaculum lavamentivorans DS-1 5456939 YP_001413014.1 CDS Plav_1738 NC_009719.1 1879844 1880695 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hne:HNE_0584 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1879844..1880695 Parvibaculum lavamentivorans DS-1 5453424 YP_001413015.1 CDS Plav_1739 NC_009719.1 1880692 1881129 D PFAM: protein of unknown function DUF1178; KEGG: bra:BRADO0580 hypothetical protein; hypothetical protein 1880692..1881129 Parvibaculum lavamentivorans DS-1 5453897 YP_001413016.1 CDS Plav_1740 NC_009719.1 1881142 1882524 R TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; D-arabinono-14-lactone oxidase; KEGG: cvi:CV1040 probable FAD-dependent oxidoreductase; FAD-linked oxidoreductase complement(1881142..1882524) Parvibaculum lavamentivorans DS-1 5455729 YP_001413017.1 CDS Plav_1741 NC_009719.1 1882521 1882892 R KEGG: pen:PSEEN3317 cytochrome c; cytochrome c complement(1882521..1882892) Parvibaculum lavamentivorans DS-1 5455937 YP_001413018.1 CDS Plav_1742 NC_009719.1 1882904 1883665 R TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mes:Meso_3002 ubiquinone biosynthesis O-methyltransferase; ubiquinone biosynthesis O-methyltransferase complement(1882904..1883665) Parvibaculum lavamentivorans DS-1 5453734 YP_001413019.1 CDS Plav_1743 NC_009719.1 1883872 1885131 D TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: mlo:mll3437 aspartokinase, alpha and beta subunits; aspartate kinase 1883872..1885131 Parvibaculum lavamentivorans DS-1 5454111 YP_001413020.1 CDS Plav_1744 NC_009719.1 1885188 1887455 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: rpd:RPD_0098 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase PtsP 1885188..1887455 Parvibaculum lavamentivorans DS-1 5456195 YP_001413021.1 CDS Plav_1745 NC_009719.1 1887699 1888823 D KEGG: mag:amb1615 hypothetical protein; hypothetical protein 1887699..1888823 Parvibaculum lavamentivorans DS-1 5453430 YP_001413022.1 CDS ispG NC_009719.1 1888993 1890144 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1888993..1890144 Parvibaculum lavamentivorans DS-1 5454872 YP_001413023.1 CDS Plav_1747 NC_009719.1 1890205 1891272 D TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sal:Sala_2714 peptide chain release factor 1; peptide chain release factor 1 1890205..1891272 Parvibaculum lavamentivorans DS-1 5455995 YP_001413024.1 CDS Plav_1748 NC_009719.1 1891272 1892123 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: mag:amb1619 methylase of polypeptide chain release factor; HemK family modification methylase 1891272..1892123 Parvibaculum lavamentivorans DS-1 5456983 YP_001413025.1 CDS Plav_1749 NC_009719.1 1892570 1893316 D KEGG: bja:blr0220 hypothetical protein; hypothetical protein 1892570..1893316 Parvibaculum lavamentivorans DS-1 5456143 YP_001413026.1 CDS Plav_1750 NC_009719.1 1893325 1894092 R PFAM: MOSC domain containing protein; KEGG: rpb:RPB_4248 MOSC; MOSC domain-containing protein complement(1893325..1894092) Parvibaculum lavamentivorans DS-1 5454079 YP_001413027.1 CDS Plav_1751 NC_009719.1 1894299 1896941 D PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rpd:RPD_4095 ATPase AAA-2; ATPase 1894299..1896941 Parvibaculum lavamentivorans DS-1 5456587 YP_001413028.1 CDS Plav_1752 NC_009719.1 1897118 1897882 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aha:AHA_1994 glucose 1-dehydrogenase; short chain dehydrogenase 1897118..1897882 Parvibaculum lavamentivorans DS-1 5455170 YP_001413029.1 CDS Plav_1753 NC_009719.1 1897921 1898205 D hypothetical protein 1897921..1898205 Parvibaculum lavamentivorans DS-1 5456441 YP_001413030.1 CDS Plav_1754 NC_009719.1 1898625 1900334 R PFAM: peptidase M23B; KEGG: rru:Rru_A0770 peptidase M23B; peptidase M23B complement(1898625..1900334) Parvibaculum lavamentivorans DS-1 5455894 YP_001413031.1 CDS Plav_1755 NC_009719.1 1906652 1908301 R PFAM: Resolvase domain; Recombinase; KEGG: pde:Pden_0106 recombinase; resolvase domain-containing protein complement(1906652..1908301) Parvibaculum lavamentivorans DS-1 5453907 YP_001413032.1 CDS Plav_1756 NC_009719.1 1908382 1908756 D hypothetical protein 1908382..1908756 Parvibaculum lavamentivorans DS-1 5455802 YP_001413033.1 CDS Plav_1757 NC_009719.1 1909331 1910506 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1909331..1910506 Parvibaculum lavamentivorans DS-1 5455246 YP_001413034.1 CDS Plav_1758 NC_009719.1 1910503 1910895 D PFAM: protein of unknown function DUF35; KEGG: reh:H16_A1296 hypothetical protein containing DUF35 domain; hypothetical protein 1910503..1910895 Parvibaculum lavamentivorans DS-1 5455787 YP_001413035.1 CDS Plav_1759 NC_009719.1 1911048 1912658 D activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; acyl-CoA synthetase 1911048..1912658 Parvibaculum lavamentivorans DS-1 5455123 YP_001413036.1 CDS Plav_1760 NC_009719.1 1912715 1913467 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2100 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1912715..1913467 Parvibaculum lavamentivorans DS-1 5454485 YP_001413037.1 CDS Plav_1761 NC_009719.1 1913585 1914997 D PFAM: ring hydroxylating dioxygenase alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: nar:Saro_3864 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 1913585..1914997 Parvibaculum lavamentivorans DS-1 5455622 YP_001413038.1 CDS Plav_1762 NC_009719.1 1914994 1915488 D PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: nar:Saro_3863 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 1914994..1915488 Parvibaculum lavamentivorans DS-1 5456160 YP_001413039.1 CDS Plav_1763 NC_009719.1 1915501 1916490 D PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: nar:Saro_3862 pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 1915501..1916490 Parvibaculum lavamentivorans DS-1 5454936 YP_001413040.1 CDS Plav_1764 NC_009719.1 1916508 1916975 R KEGG: bbr:BB0659 hypothetical protein; hypothetical protein complement(1916508..1916975) Parvibaculum lavamentivorans DS-1 5455874 YP_001413041.1 CDS Plav_1765 NC_009719.1 1917064 1918329 R PFAM: cytochrome P450; KEGG: cytochrome P450 family protein; cytochrome P450 complement(1917064..1918329) Parvibaculum lavamentivorans DS-1 5456326 YP_001413042.1 CDS Plav_1766 NC_009719.1 1918539 1920179 R AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate; cyclohexanecarboxylate-CoA ligase complement(1918539..1920179) Parvibaculum lavamentivorans DS-1 5453857 YP_001413043.1 CDS Plav_1767 NC_009719.1 1920220 1921080 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_5297 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1920220..1921080) Parvibaculum lavamentivorans DS-1 5455564 YP_001413044.1 CDS Plav_1768 NC_009719.1 1921106 1921741 R PFAM: regulatory protein TetR; KEGG: pol:Bpro_5293 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1921106..1921741) Parvibaculum lavamentivorans DS-1 5457041 YP_001413045.1 CDS Plav_1769 NC_009719.1 1921911 1922672 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: eba:ebA1956 putative 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; short-chain dehydrogenase/reductase SDR 1921911..1922672 Parvibaculum lavamentivorans DS-1 5456694 YP_001413046.1 CDS Plav_1770 NC_009719.1 1922684 1923475 D TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_B3916 naphthoate synthase; naphthoate synthase 1922684..1923475 Parvibaculum lavamentivorans DS-1 5456362 YP_001413047.1 CDS Plav_1771 NC_009719.1 1923484 1924641 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: eba:ebA1959 cyclohexanecarboxyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1923484..1924641 Parvibaculum lavamentivorans DS-1 5455464 YP_001413048.1 CDS Plav_1772 NC_009719.1 1924634 1925440 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_5272 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1924634..1925440 Parvibaculum lavamentivorans DS-1 5456513 YP_001413049.1 CDS Plav_1773 NC_009719.1 1925478 1926629 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_6236 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 1925478..1926629 Parvibaculum lavamentivorans DS-1 5454289 YP_001413050.1 CDS Plav_1774 NC_009719.1 1926658 1927773 D PFAM: luciferase family protein; KEGG: bxe:Bxe_C0953 putative luciferase-like monooxygenase; alkanal monooxygenase 1926658..1927773 Parvibaculum lavamentivorans DS-1 5453690 YP_001413051.1 CDS Plav_1776 NC_009719.1 1929157 1929897 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: hne:HNE_0937 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase complement(1929157..1929897) Parvibaculum lavamentivorans DS-1 5454087 YP_001413052.1 CDS Plav_1777 NC_009719.1 1929990 1930865 R PFAM: alpha/beta hydrolase fold; KEGG: mav:MAV_1846 hydrolase, alpha/beta fold family protein; alpha/beta hydrolase fold protein complement(1929990..1930865) Parvibaculum lavamentivorans DS-1 5456242 YP_001413053.1 CDS Plav_1778 NC_009719.1 1931036 1931839 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: eli:ELI_14950 regulatory protein GntR, HTH; GntR family transcriptional regulator 1931036..1931839 Parvibaculum lavamentivorans DS-1 5457020 YP_001413054.1 CDS Plav_1779 NC_009719.1 1931955 1933088 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: eli:ELI_14955 oxidoreductase, 2-nitropropane dioxygenase family protein; 2-nitropropane dioxygenase 1931955..1933088 Parvibaculum lavamentivorans DS-1 5454280 YP_001413055.1 CDS Plav_1780 NC_009719.1 1933137 1933583 D PFAM: thioesterase superfamily protein; KEGG: mjl:Mjls_3233 uncharacterized domain 1; thioesterase superfamily protein 1933137..1933583 Parvibaculum lavamentivorans DS-1 5455719 YP_001413056.1 CDS Plav_1781 NC_009719.1 1933709 1935343 D KEGG: rha:RHA1_ro06698 cyclohexanone monooxygenase; cyclohexanone monooxygenase 1933709..1935343 Parvibaculum lavamentivorans DS-1 5454066 YP_001413057.1 CDS Plav_1782 NC_009719.1 1935500 1936753 D PFAM: cytochrome P450; KEGG: eli:ELI_14945 cytochrome P450 family protein; cytochrome P450 1935500..1936753 Parvibaculum lavamentivorans DS-1 5454641 YP_001413058.1 CDS Plav_1783 NC_009719.1 1936860 1937186 D PFAM: ferredoxin; KEGG: eli:ELI_14940 ferredoxin, 2Fe-2S; ferredoxin 1936860..1937186 Parvibaculum lavamentivorans DS-1 5456197 YP_001413059.1 CDS Plav_1784 NC_009719.1 1937416 1938144 R PFAM: regulatory protein TetR; KEGG: bch:Bcen2424_0178 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1937416..1938144) Parvibaculum lavamentivorans DS-1 5454132 YP_001413060.1 CDS Plav_1785 NC_009719.1 1938415 1939896 D PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: gtn:GTNG_3160 putative aromatic compound hydroxylase; 4-hydroxyphenylacetate 3-hydroxylase 1938415..1939896 Parvibaculum lavamentivorans DS-1 5453908 YP_001413061.1 CDS Plav_1786 NC_009719.1 1939896 1941356 D PFAM: aldehyde dehydrogenase; KEGG: ace:Acel_1100 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase 1939896..1941356 Parvibaculum lavamentivorans DS-1 5454196 YP_001413062.1 CDS Plav_1787 NC_009719.1 1941369 1942271 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nar:Saro_3865 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1941369..1942271 Parvibaculum lavamentivorans DS-1 5454546 YP_001413063.1 CDS Plav_1788 NC_009719.1 1942319 1943152 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: nar:Saro_2598 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1942319..1943152 Parvibaculum lavamentivorans DS-1 5455546 YP_001413064.1 CDS Plav_1789 NC_009719.1 1943164 1943946 D PFAM: HpcH/HpaI aldolase; KEGG: sen:SACE_0699 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; HpcH/HpaI aldolase 1943164..1943946 Parvibaculum lavamentivorans DS-1 5453565 YP_001413065.1 CDS Plav_1790 NC_009719.1 1943936 1944727 D PFAM: Hydratase/decarboxylase; KEGG: aau:AAur_3913 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; 4-oxalocrotonate decarboxylase 1943936..1944727 Parvibaculum lavamentivorans DS-1 5457002 YP_001413066.1 CDS Plav_1791 NC_009719.1 1944823 1945278 D KEGG: rha:RHA1_ro10221 hypothetical protein; hypothetical protein 1944823..1945278 Parvibaculum lavamentivorans DS-1 5456672 YP_001413067.1 CDS Plav_1792 NC_009719.1 1945392 1947083 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mtf:TBFG_13570 hypothetical dehydrogenase; 3-oxosteroid 1-dehydrogenase 1945392..1947083 Parvibaculum lavamentivorans DS-1 5455821 YP_001413068.1 CDS Plav_1793 NC_009719.1 1947473 1948561 R PFAM: luciferase family protein; KEGG: swi:Swit_4156 alkanal monooxygenase (FMN-linked); alkanal monooxygenase complement(1947473..1948561) Parvibaculum lavamentivorans DS-1 5454181 YP_001413069.1 CDS Plav_1794 NC_009719.1 1948601 1949413 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro04688 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(1948601..1949413) Parvibaculum lavamentivorans DS-1 5454683 YP_001413070.1 CDS Plav_1795 NC_009719.1 1949570 1950673 D PFAM: amidohydrolase 2; KEGG: swi:Swit_1767 amidohydrolase 2; amidohydrolase 2 1949570..1950673 Parvibaculum lavamentivorans DS-1 5455169 YP_001413071.1 CDS Plav_1796 NC_009719.1 1950732 1952414 D PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: swi:Swit_2091 amidohydrolase 3; D-aminoacylase domain-containing protein 1950732..1952414 Parvibaculum lavamentivorans DS-1 5456837 YP_001413072.1 CDS Plav_1797 NC_009719.1 1952429 1953322 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: acr:Acry_0629 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 1952429..1953322 Parvibaculum lavamentivorans DS-1 5453879 YP_001413073.1 CDS Plav_1798 NC_009719.1 1953323 1954162 R PFAM: regulatory protein IclR; KEGG: bpe:BP0674 probable transcriptional regulator; regulatory protein IclR complement(1953323..1954162) Parvibaculum lavamentivorans DS-1 5455842 YP_001413074.1 CDS Plav_1799 NC_009719.1 1954217 1956262 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: eba:ebA5836 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase complement(1954217..1956262) Parvibaculum lavamentivorans DS-1 5454094 YP_001413075.1 CDS Plav_1800 NC_009719.1 1956282 1957130 R PFAM: MaoC domain protein dehydratase; KEGG: ptr:462019 hydroxysteroid (17-beta) dehydrogenase 4; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase complement(1956282..1957130) Parvibaculum lavamentivorans DS-1 5456937 YP_001413076.1 CDS Plav_1801 NC_009719.1 1957185 1957754 R PFAM: Carboxymuconolactone decarboxylase; KEGG: mgi:Mflv_4627 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(1957185..1957754) Parvibaculum lavamentivorans DS-1 5454304 YP_001413077.1 CDS Plav_1802 NC_009719.1 1957904 1958998 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbr:BB0552 putative zinc-binding dehydrogenase; alcohol dehydrogenase 1957904..1958998 Parvibaculum lavamentivorans DS-1 5453343 YP_001413078.1 CDS Plav_1803 NC_009719.1 1959086 1960255 D KEGG: eli:ELI_14965 putative nonspecific lipid-transfer protein; putative nonspecific lipid-transfer protein 1959086..1960255 Parvibaculum lavamentivorans DS-1 5455130 YP_001413079.1 CDS Plav_1804 NC_009719.1 1960258 1960680 D PFAM: protein of unknown function DUF35; KEGG: eli:ELI_14970 hypothetical protein; hypothetical protein 1960258..1960680 Parvibaculum lavamentivorans DS-1 5453921 YP_001413080.1 CDS Plav_1805 NC_009719.1 1960720 1961913 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: eli:ELI_14975 putative acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 1960720..1961913 Parvibaculum lavamentivorans DS-1 5454540 YP_001413081.1 CDS Plav_1806 NC_009719.1 1961925 1963010 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: eli:ELI_14980 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1961925..1963010 Parvibaculum lavamentivorans DS-1 5455686 YP_001413082.1 CDS Plav_1807 NC_009719.1 1963244 1964443 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sal:Sala_1104 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 1963244..1964443 Parvibaculum lavamentivorans DS-1 5455416 YP_001413083.1 CDS Plav_1809 NC_009719.1 1964851 1965213 D KEGG: bvi:Bcep1808_4948 biopolymer transport protein ExbD/TolR; biopolymer transport protein-like protein 1964851..1965213 Parvibaculum lavamentivorans DS-1 5454067 YP_001413084.1 CDS Plav_1810 NC_009719.1 1965252 1966037 D KEGG: mlo:mlr6104 hypothetical protein; hypothetical protein 1965252..1966037 Parvibaculum lavamentivorans DS-1 5453967 YP_001413085.1 CDS Plav_1811 NC_009719.1 1966044 1966319 R KEGG: bbt:BBta_7428 hypothetical protein; hypothetical protein complement(1966044..1966319) Parvibaculum lavamentivorans DS-1 5457039 YP_001413086.1 CDS Plav_1812 NC_009719.1 1966406 1966624 D PFAM: helix-turn-helix domain protein; KEGG: rpe:RPE_4037 transcriptional regulator, XRE family; XRE family transcriptional regulator 1966406..1966624 Parvibaculum lavamentivorans DS-1 5454052 YP_001413087.1 CDS Plav_1813 NC_009719.1 1966772 1967014 D PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_3550 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 1966772..1967014 Parvibaculum lavamentivorans DS-1 5453490 YP_001413088.1 CDS Plav_1814 NC_009719.1 1967251 1968186 D PFAM: domain of unknown function DUF1738; KEGG: mlo:mlr6154 antirestriction protein; hypothetical protein 1967251..1968186 Parvibaculum lavamentivorans DS-1 5455936 YP_001413089.1 CDS Plav_1815 NC_009719.1 1968393 1968911 D hypothetical protein 1968393..1968911 Parvibaculum lavamentivorans DS-1 5454989 YP_001413090.1 CDS Plav_1816 NC_009719.1 1968883 1970613 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: mlo:mlr6157 similar to partitioning protein; parB-like partition protein 1968883..1970613 Parvibaculum lavamentivorans DS-1 5455322 YP_001413091.1 CDS Plav_1817 NC_009719.1 1971254 1971577 D PFAM: protein of unknown function DUF736; KEGG: mlo:mlr6185 hypothetical protein; hypothetical protein 1971254..1971577 Parvibaculum lavamentivorans DS-1 5454290 YP_001413092.1 CDS Plav_1818 NC_009719.1 1971702 1971986 D KEGG: mlo:msr6186 hypothetical protein; hypothetical protein 1971702..1971986 Parvibaculum lavamentivorans DS-1 5455059 YP_001413093.1 CDS Plav_1819 NC_009719.1 1971979 1972557 D KEGG: mlo:mlr6188 plasmid transfer protein TraF; plasmid transfer protein TraF 1971979..1972557 Parvibaculum lavamentivorans DS-1 5456864 YP_001413094.1 CDS Plav_1820 NC_009719.1 1972545 1973300 D PFAM: Lytic transglycosylase catalytic; KEGG: mlo:mlr6189 similar to transglycosylase; lytic transglycosylase catalytic subunit 1972545..1973300 Parvibaculum lavamentivorans DS-1 5456794 YP_001413095.1 CDS Plav_1821 NC_009719.1 1973557 1975542 D KEGG: mlo:mlr6191 hypothetical protein; hypothetical protein 1973557..1975542 Parvibaculum lavamentivorans DS-1 5456708 YP_001413096.1 CDS Plav_1822 NC_009719.1 1975746 1977152 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: rpe:RPE_2473 exodeoxyribonuclease I; exodeoxyribonuclease I complement(1975746..1977152) Parvibaculum lavamentivorans DS-1 5457007 YP_001413097.1 CDS Plav_1823 NC_009719.1 1977168 1977689 R PFAM: protein of unknown function DUF955; KEGG: rpe:RPE_2472 protein of unknown function DUF955; hypothetical protein complement(1977168..1977689) Parvibaculum lavamentivorans DS-1 5457045 YP_001413098.1 CDS Plav_1824 NC_009719.1 1977686 1978039 R PFAM: helix-turn-helix domain protein; KEGG: rpe:RPE_2471 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1977686..1978039) Parvibaculum lavamentivorans DS-1 5455687 YP_001413099.1 CDS Plav_1825 NC_009719.1 1978202 1978423 D KEGG: rpe:RPE_2470 hypothetical protein; hypothetical protein 1978202..1978423 Parvibaculum lavamentivorans DS-1 5454880 YP_001413100.1 CDS Plav_1826 NC_009719.1 1978510 1979433 D PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rpe:RPE_2469 AAA ATPase, central domain protein; ATPase central domain-containing protein 1978510..1979433 Parvibaculum lavamentivorans DS-1 5455537 YP_001413101.1 CDS Plav_1827 NC_009719.1 1979430 1979906 D KEGG: rpe:RPE_2468 hypothetical protein; hypothetical protein 1979430..1979906 Parvibaculum lavamentivorans DS-1 5454785 YP_001413102.1 CDS Plav_1828 NC_009719.1 1979903 1980403 D KEGG: rpe:RPE_2467 hypothetical protein; hypothetical protein 1979903..1980403 Parvibaculum lavamentivorans DS-1 5455503 YP_001413103.1 CDS Plav_1829 NC_009719.1 1980403 1981299 D KEGG: rpe:RPE_2466 hypothetical protein; hypothetical protein 1980403..1981299 Parvibaculum lavamentivorans DS-1 5455445 YP_001413104.1 CDS Plav_1830 NC_009719.1 1981331 1982056 D KEGG: ajs:Ajs_1271 hypothetical protein; hypothetical protein 1981331..1982056 Parvibaculum lavamentivorans DS-1 5455161 YP_001413105.1 CDS Plav_1831 NC_009719.1 1982131 1983429 D KEGG: bbt:BBta_7549 hypothetical protein; hypothetical protein 1982131..1983429 Parvibaculum lavamentivorans DS-1 5454795 YP_001413106.1 CDS Plav_1832 NC_009719.1 1983532 1983978 R KEGG: bbt:BBta_7418 putative membrane protein of unknown function; hypothetical protein complement(1983532..1983978) Parvibaculum lavamentivorans DS-1 5454685 YP_001413107.1 CDS Plav_1833 NC_009719.1 1984249 1986312 D type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG 1984249..1986312 Parvibaculum lavamentivorans DS-1 5453561 YP_001413108.1 CDS Plav_1834 NC_009719.1 1986324 1986743 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: rme:Rmet_1549 CopG-like DNA-binding; CopG/DNA-binding domain-containing protein 1986324..1986743 Parvibaculum lavamentivorans DS-1 5455153 YP_001413109.1 CDS Plav_1835 NC_009719.1 1986740 1987717 D TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: mlo:mlr6397 conjugal transfer protein traB; P-type conjugative transfer ATPase TrbB 1986740..1987717 Parvibaculum lavamentivorans DS-1 5453499 YP_001413110.1 CDS Plav_1836 NC_009719.1 1987735 1988058 D PFAM: Conjugal transfer protein TrbC; KEGG: pde:Pden_3195 conjugal transfer protein TrbC; conjugal transfer protein TrbC 1987735..1988058 Parvibaculum lavamentivorans DS-1 5454193 YP_001413111.1 CDS Plav_1837 NC_009719.1 1988055 1988318 D KEGG: aav:Aave_0728 putative conjugal transfer TrbD transmembrane protein; putative conjugal transfer TrbD transmembrane protein 1988055..1988318 Parvibaculum lavamentivorans DS-1 5454319 YP_001413112.1 CDS Plav_1838 NC_009719.1 1988312 1990738 D type IV secretion system VirB4 family; conjugal transfer ATPase TrbE 1988312..1990738 Parvibaculum lavamentivorans DS-1 5455305 YP_001413113.1 CDS Plav_1839 NC_009719.1 1990753 1991478 D TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: mlo:mlr6401 conjugal transfer protein TrbJ; conjugal transfer protein TrbJ 1990753..1991478 Parvibaculum lavamentivorans DS-1 5456078 YP_001413114.1 CDS Plav_1840 NC_009719.1 1991511 1992674 D type IV secretion VirB6 family; conjugal transfer protein TrbL 1991511..1992674 Parvibaculum lavamentivorans DS-1 5453622 YP_001413115.1 CDS Plav_1841 NC_009719.1 1992674 1993372 D PFAM: Conjugal transfer protein; KEGG: mlo:mlr6403 conjugal transfer protein trbF; conjugal transfer protein TrbF 1992674..1993372 Parvibaculum lavamentivorans DS-1 5454841 YP_001413116.1 CDS Plav_1842 NC_009719.1 1993387 1994406 D TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mlo:mlr6404 conjugal transfer protein trbG; P-type conjugative transfer protein TrbG 1993387..1994406 Parvibaculum lavamentivorans DS-1 5454808 YP_001413117.1 CDS Plav_1843 NC_009719.1 1994416 1995711 D PFAM: Ubiquitin interacting domain protein; conjugation TrbI family protein; KEGG: mlo:mlr6405 conjugal transfer protein trbI; conjugation TrbI family protein 1994416..1995711 Parvibaculum lavamentivorans DS-1 5454361 YP_001413118.1 CDS Plav_1844 NC_009719.1 1995717 1996025 D KEGG: mlo:msr6406 hypothetical protein; hypothetical protein 1995717..1996025 Parvibaculum lavamentivorans DS-1 5455882 YP_001413119.1 CDS Plav_1845 NC_009719.1 1996027 1996338 D PFAM: protein of unknown function DUF736; KEGG: hypothetical protein; hypothetical protein 1996027..1996338 Parvibaculum lavamentivorans DS-1 5453989 YP_001413120.1 CDS Plav_1846 NC_009719.1 1996883 1997536 D KEGG: nha:Nham_4291 hypothetical protein; hypothetical protein 1996883..1997536 Parvibaculum lavamentivorans DS-1 5455413 YP_001413121.1 CDS Plav_1847 NC_009719.1 1997533 1998618 D PFAM: Domain of unknown function DUF1814; KEGG: nha:Nham_4292 hypothetical protein; hypothetical protein 1997533..1998618 Parvibaculum lavamentivorans DS-1 5455365 YP_001413122.1 CDS Plav_1848 NC_009719.1 1998611 2002549 D hypothetical protein 1998611..2002549 Parvibaculum lavamentivorans DS-1 5454714 YP_001413123.1 CDS Plav_1849 NC_009719.1 2002536 2006915 D KEGG: pfl:PFL_2817 hypothetical protein; hypothetical protein 2002536..2006915 Parvibaculum lavamentivorans DS-1 5454488 YP_001413124.1 CDS Plav_1850 NC_009719.1 2007271 2010111 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; Hpt domain protein; KEGG: mag:amb3438 sensor protein GacS; multi-sensor hybrid histidine kinase 2007271..2010111 Parvibaculum lavamentivorans DS-1 5455710 YP_001413125.1 CDS Plav_1851 NC_009719.1 2010483 2011535 R PFAM: regulatory protein MarR; KEGG: sal:Sala_2099 hypothetical protein; MarR family transcriptional regulator complement(2010483..2011535) Parvibaculum lavamentivorans DS-1 5454413 YP_001413126.1 CDS Plav_1852 NC_009719.1 2011792 2012415 D PFAM: class II aldolase/adducin family protein; KEGG: xcb:XC_2369 putative L-fuculose-phosphate aldolase; class II aldolase/adducin family protein 2011792..2012415 Parvibaculum lavamentivorans DS-1 5453633 YP_001413127.1 CDS Plav_1853 NC_009719.1 2012412 2012966 D PFAM: Acireductone dioxygenase ARD; KEGG: xcv:XCV1885 acireductone dioxygenase family protein; acireductone dioxygenase ARD 2012412..2012966 Parvibaculum lavamentivorans DS-1 5456069 YP_001413128.1 CDS Plav_1854 NC_009719.1 2012963 2013670 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mca:MCA0797 hydrolase, haloacid dehalogenase-like family; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 2012963..2013670 Parvibaculum lavamentivorans DS-1 5455932 YP_001413129.1 CDS Plav_1855 NC_009719.1 2013727 2013957 R KEGG: acr:Acry_0749 hypothetical protein; hypothetical protein complement(2013727..2013957) Parvibaculum lavamentivorans DS-1 5453728 YP_001413130.1 CDS Plav_1856 NC_009719.1 2014109 2014840 D TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: rru:Rru_A0027 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase 2014109..2014840 Parvibaculum lavamentivorans DS-1 5455472 YP_001413131.1 CDS Plav_1857 NC_009719.1 2015119 2015421 D hypothetical protein 2015119..2015421 Parvibaculum lavamentivorans DS-1 5454194 YP_001413132.1 CDS Plav_1858 NC_009719.1 2015643 2017184 R PFAM: FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: swi:Swit_2390 GMC oxidoreductase; FAD dependent oxidoreductase complement(2015643..2017184) Parvibaculum lavamentivorans DS-1 5456100 YP_001413133.1 CDS Plav_1859 NC_009719.1 2017483 2018910 D PFAM: aldehyde dehydrogenase; KEGG: hne:HNE_3109 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 2017483..2018910 Parvibaculum lavamentivorans DS-1 5454990 YP_001413134.1 CDS Plav_1860 NC_009719.1 2019071 2020381 D KEGG: rle:RL1940 hypothetical protein; hypothetical protein 2019071..2020381 Parvibaculum lavamentivorans DS-1 5453922 YP_001413135.1 CDS Plav_1861 NC_009719.1 2020735 2021031 D hypothetical protein 2020735..2021031 Parvibaculum lavamentivorans DS-1 5455876 YP_001413136.1 CDS Plav_1862 NC_009719.1 2021269 2022591 R PFAM: major facilitator superfamily MFS_1; KEGG: vei:Veis_4967 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2021269..2022591) Parvibaculum lavamentivorans DS-1 5455469 YP_001413137.1 CDS Plav_1863 NC_009719.1 2022724 2023563 R PFAM: protein of unknown function DUF519; KEGG: mag:amb0584 protein involved in catabolism of external DNA; hypothetical protein complement(2022724..2023563) Parvibaculum lavamentivorans DS-1 5453350 YP_001413138.1 CDS Plav_1864 NC_009719.1 2023571 2024362 R PFAM: protein of unknown function DUF344; KEGG: bvi:Bcep1808_7286 protein of unknown function DUF344; hypothetical protein complement(2023571..2024362) Parvibaculum lavamentivorans DS-1 5455402 YP_001413139.1 CDS Plav_1865 NC_009719.1 2024507 2026624 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nwi:Nwi_3051 TonB-dependent receptor; TonB-dependent receptor 2024507..2026624 Parvibaculum lavamentivorans DS-1 5455734 YP_001413140.1 CDS Plav_1867 NC_009719.1 2027415 2028095 R TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: rpd:RPD_0339 anti-sigma factor ChrR , putative; anti-ECF sigma factor ChrR complement(2027415..2028095) Parvibaculum lavamentivorans DS-1 5453626 YP_001413141.1 CDS Plav_1868 NC_009719.1 2028092 2028760 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(2028092..2028760) Parvibaculum lavamentivorans DS-1 5453534 YP_001413142.1 CDS Plav_1869 NC_009719.1 2028935 2030323 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rle:pRL120576 putative amine oxidase; amine oxidase 2028935..2030323 Parvibaculum lavamentivorans DS-1 5453703 YP_001413143.1 CDS Plav_1870 NC_009719.1 2030320 2031126 D PFAM: protein of unknown function DUF1365; KEGG: rru:Rru_A0724 protein of unknown function DUF1365; hypothetical protein 2030320..2031126 Parvibaculum lavamentivorans DS-1 5455984 YP_001413144.1 CDS Plav_1871 NC_009719.1 2031275 2033440 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: mag:amb1214 predicted signal transduction protein; diguanylate cyclase/phosphodiesterase 2031275..2033440 Parvibaculum lavamentivorans DS-1 5454147 YP_001413145.1 CDS Plav_1872 NC_009719.1 2033594 2034787 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: eli:ELI_14975 putative acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 2033594..2034787 Parvibaculum lavamentivorans DS-1 5455662 YP_001413146.1 CDS Plav_1873 NC_009719.1 2034799 2035893 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: eli:ELI_14980 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2034799..2035893 Parvibaculum lavamentivorans DS-1 5454316 YP_001413147.1 CDS Plav_1874 NC_009719.1 2036049 2036306 D TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: swi:Swit_5118 addiction module antitoxin, RelB/DinJ family; addiction module antitoxin 2036049..2036306 Parvibaculum lavamentivorans DS-1 5453678 YP_001413148.1 CDS Plav_1876 NC_009719.1 2036614 2036934 D PFAM: MtN3 and saliva related transmembrane protein; KEGG: sde:Sde_3602 glutathione synthetase; MtN3 and saliva related transmembrane protein 2036614..2036934 Parvibaculum lavamentivorans DS-1 5454248 YP_001413149.1 CDS Plav_1877 NC_009719.1 2037024 2038118 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr2812 hypothetical zinc-type alcohol dehydrogenase-like protein; alcohol dehydrogenase 2037024..2038118 Parvibaculum lavamentivorans DS-1 5455031 YP_001413150.1 CDS Plav_1878 NC_009719.1 2038209 2038811 R PFAM: Glutathione S-transferase domain; KEGG: mgm:Mmc1_3681 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(2038209..2038811) Parvibaculum lavamentivorans DS-1 5454390 YP_001413151.1 CDS Plav_1879 NC_009719.1 2038837 2039328 R KEGG: noc:Noc_2584 Rickettsia 17 kDa surface antigen; hypothetical protein complement(2038837..2039328) Parvibaculum lavamentivorans DS-1 5454535 YP_001413152.1 CDS Plav_1880 NC_009719.1 2039331 2039840 R hypothetical protein complement(2039331..2039840) Parvibaculum lavamentivorans DS-1 5455337 YP_001413153.1 CDS Plav_1881 NC_009719.1 2039850 2040185 R hypothetical protein complement(2039850..2040185) Parvibaculum lavamentivorans DS-1 5455641 YP_001413154.1 CDS Plav_1882 NC_009719.1 2040228 2041676 R PFAM: phospholipase D/Transphosphatidylase; KEGG: mxa:MXAN_0537 putative cardiolipin synthase; phospholipase D/transphosphatidylase complement(2040228..2041676) Parvibaculum lavamentivorans DS-1 5455965 YP_001413155.1 CDS Plav_1883 NC_009719.1 2041728 2043836 R PFAM: TonB-dependent receptor; KEGG: mmr:Mmar10_1609 TonB-dependent receptor; TonB-dependent receptor complement(2041728..2043836) Parvibaculum lavamentivorans DS-1 5453491 YP_001413156.1 CDS Plav_1884 NC_009719.1 2044054 2044704 D PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: bms:BR0471 cytochrome c oxidase assembly protein Ctag; cytochrome c oxidase assembly protein CtaG/Cox11 2044054..2044704 Parvibaculum lavamentivorans DS-1 5456681 YP_001413157.1 CDS Plav_1885 NC_009719.1 2044783 2045523 D PFAM: Rhomboid family protein; KEGG: rru:Rru_A3565 rhomboid-like protein; rhomboid family protein 2044783..2045523 Parvibaculum lavamentivorans DS-1 5454500 YP_001413158.1 CDS Plav_1886 NC_009719.1 2045520 2046668 R PFAM: Aldose 1-epimerase; KEGG: bur:Bcep18194_A3707 aldose 1-epimerase; aldose 1-epimerase complement(2045520..2046668) Parvibaculum lavamentivorans DS-1 5456615 YP_001413159.1 CDS Plav_1887 NC_009719.1 2046784 2047863 D KEGG: rle:pRL90288 putative transport protein; putative transport protein 2046784..2047863 Parvibaculum lavamentivorans DS-1 5455101 YP_001413160.1 CDS Plav_1888 NC_009719.1 2047894 2048715 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_2184 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2047894..2048715 Parvibaculum lavamentivorans DS-1 5454076 YP_001413161.1 CDS Plav_1889 NC_009719.1 2048712 2049485 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbe:GbCGDNIH1_1748 ABC transporter ATP-binding protein; ABC transporter-like protein 2048712..2049485 Parvibaculum lavamentivorans DS-1 5454811 YP_001413162.1 CDS Plav_1890 NC_009719.1 2049580 2050416 D KEGG: rpe:RPE_1217 hypothetical protein; hypothetical protein 2049580..2050416 Parvibaculum lavamentivorans DS-1 5454635 YP_001413163.1 CDS Plav_1891 NC_009719.1 2050416 2051051 D KEGG: rle:pRL90292 hypothetical protein; hypothetical protein 2050416..2051051 Parvibaculum lavamentivorans DS-1 5453379 YP_001413164.1 CDS Plav_1892 NC_009719.1 2051085 2054702 D TIGRFAM: urea amidolyase related protein; Urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: gbe:GbCGDNIH1_1745 UreA carboxylase; Urea carboxylase 2051085..2054702 Parvibaculum lavamentivorans DS-1 5454387 YP_001413165.1 CDS Plav_1893 NC_009719.1 2054699 2056489 D TIGRFAM: Allophanate hydrolase; PFAM: Amidase; KEGG: nmu:Nmul_A0944 amidase; allophanate hydrolase 2054699..2056489 Parvibaculum lavamentivorans DS-1 5455412 YP_001413166.1 CDS Plav_1894 NC_009719.1 2056486 2057121 R TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pmf:P9303_00971 possible phosphatase; histidinol-phosphate phosphatase family protein complement(2056486..2057121) Parvibaculum lavamentivorans DS-1 5457032 YP_001413167.1 CDS Plav_1895 NC_009719.1 2057222 2058688 D TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: mag:amb0778 ADP-heptose synthase; bifunctional protein RfaE 2057222..2058688 Parvibaculum lavamentivorans DS-1 5456166 YP_001413168.1 CDS Plav_1896 NC_009719.1 2058697 2059479 D PFAM: Abortive infection protein; KEGG: btl:BALH_4146 CAAX amino terminal protease family; abortive infection protein 2058697..2059479 Parvibaculum lavamentivorans DS-1 5456626 YP_001413169.1 CDS Plav_1897 NC_009719.1 2059470 2060048 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(2059470..2060048) Parvibaculum lavamentivorans DS-1 5456559 YP_001413170.1 CDS Plav_1898 NC_009719.1 2060304 2061680 D PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: swi:Swit_1382 hypothetical protein; hypothetical protein 2060304..2061680 Parvibaculum lavamentivorans DS-1 5454322 YP_001413171.1 CDS Plav_1899 NC_009719.1 2061699 2064785 D KEGG: swi:Swit_1381 hypothetical protein; hypothetical protein 2061699..2064785 Parvibaculum lavamentivorans DS-1 5454149 YP_001413172.1 CDS Plav_1900 NC_009719.1 2065070 2066038 R TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: mes:Meso_0318 putative ribonuclease BN; putative ribonuclease BN complement(2065070..2066038) Parvibaculum lavamentivorans DS-1 5454456 YP_001413173.1 CDS Plav_1901 NC_009719.1 2066258 2067247 R TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KEGG: rpe:RPE_0696 KpsF/GutQ family protein; KpsF/GutQ family protein complement(2066258..2067247) Parvibaculum lavamentivorans DS-1 5453828 YP_001413174.1 CDS Plav_1902 NC_009719.1 2067465 2068271 D PFAM: metallophosphoesterase; KEGG: rru:Rru_A3111 metallophosphoesterase; metallophosphoesterase 2067465..2068271 Parvibaculum lavamentivorans DS-1 5457028 YP_001413175.1 CDS Plav_1903 NC_009719.1 2068464 2069129 D PFAM: polysaccharide export protein; KEGG: hne:HNE_2650 polysaccharide biosynthesis/export protein; polysaccharide export protein 2068464..2069129 Parvibaculum lavamentivorans DS-1 5456522 YP_001413176.1 CDS Plav_1904 NC_009719.1 2069483 2070010 D hypothetical protein 2069483..2070010 Parvibaculum lavamentivorans DS-1 5454938 YP_001413177.1 CDS Plav_1905 NC_009719.1 2070109 2071380 D KEGG: hypothetical protein; hypothetical protein 2070109..2071380 Parvibaculum lavamentivorans DS-1 5453488 YP_001413178.1 CDS Plav_1906 NC_009719.1 2071538 2073808 D PFAM: lipopolysaccharide biosynthesis protein; KEGG: hypothetical protein; non-specific protein-tyrosine kinase 2071538..2073808 Parvibaculum lavamentivorans DS-1 5453487 YP_001413179.1 CDS Plav_1907 NC_009719.1 2073798 2074526 D KEGG: rru:Rru_A1491 hypothetical protein; hypothetical protein 2073798..2074526 Parvibaculum lavamentivorans DS-1 5457024 YP_001413180.1 CDS Plav_1908 NC_009719.1 2074523 2075941 R PFAM: O-antigen polymerase; KEGG: rru:Rru_A1492 hypothetical protein; O-antigen polymerase complement(2074523..2075941) Parvibaculum lavamentivorans DS-1 5456999 YP_001413181.1 CDS Plav_1909 NC_009719.1 2075938 2077965 R PFAM: acyltransferase 3; KEGG: swi:Swit_4615 acyltransferase 3; acyltransferase 3 complement(2075938..2077965) Parvibaculum lavamentivorans DS-1 5457009 YP_001413182.1 CDS Plav_1910 NC_009719.1 2078119 2079681 D PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: bfr:BF2001 putative flippase; polysaccharide biosynthesis protein 2078119..2079681 Parvibaculum lavamentivorans DS-1 5454969 YP_001413183.1 CDS Plav_1911 NC_009719.1 2079721 2081145 D hypothetical protein 2079721..2081145 Parvibaculum lavamentivorans DS-1 5456701 YP_001413184.1 CDS Plav_1912 NC_009719.1 2081252 2082211 D PFAM: sulfotransferase; KEGG: aeh:Mlg_2328 sulfotransferase; sulfotransferase 2081252..2082211 Parvibaculum lavamentivorans DS-1 5455489 YP_001413185.1 CDS Plav_1913 NC_009719.1 2082560 2083696 D PFAM: glycosyl transferase group 1; KEGG: rxy:Rxyl_0689 glycosyl transferase, group 1; group 1 glycosyl transferase 2082560..2083696 Parvibaculum lavamentivorans DS-1 5455028 YP_001413186.1 CDS Plav_1914 NC_009719.1 2083693 2084727 D PFAM: glycosyl transferase group 1; KEGG: aau:AAur_4121 putative glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 2083693..2084727 Parvibaculum lavamentivorans DS-1 5455067 YP_001413187.1 CDS Plav_1915 NC_009719.1 2084720 2085787 D PFAM: polysaccharide pyruvyl transferase; KEGG: bld:BLi03680 YvfF; polysaccharide pyruvyl transferase 2084720..2085787 Parvibaculum lavamentivorans DS-1 5455078 YP_001413188.1 CDS Plav_1916 NC_009719.1 2085789 2086925 R PFAM: glycosyl transferase group 1; KEGG: sru:SRU_0281 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(2085789..2086925) Parvibaculum lavamentivorans DS-1 5455806 YP_001413189.1 CDS Plav_1917 NC_009719.1 2086942 2087895 R PFAM: glycosyl transferase family 2; KEGG: ava:Ava_0844 glycosyl transferase, family 2; glycosyl transferase family protein complement(2086942..2087895) Parvibaculum lavamentivorans DS-1 5456669 YP_001413190.1 CDS Plav_1918 NC_009719.1 2087929 2089191 R PFAM: O-antigen polymerase; KEGG: vpa:VPA1409 hypothetical protein; O-antigen polymerase complement(2087929..2089191) Parvibaculum lavamentivorans DS-1 5454968 YP_001413191.1 CDS Plav_1919 NC_009719.1 2089185 2090408 R PFAM: glycosyl transferase group 1; KEGG: rba:RB8313 putative glycosyl transferase (WbnE); group 1 glycosyl transferase complement(2089185..2090408) Parvibaculum lavamentivorans DS-1 5455893 YP_001413192.1 CDS Plav_1920 NC_009719.1 2090630 2091160 D PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 2090630..2091160 Parvibaculum lavamentivorans DS-1 5455927 YP_001413193.1 CDS Plav_1921 NC_009719.1 2091304 2092608 R PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: rpe:RPE_4206 UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase complement(2091304..2092608) Parvibaculum lavamentivorans DS-1 5457018 YP_001413194.1 CDS Plav_1922 NC_009719.1 2092758 2093729 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ade:Adeh_0221 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2092758..2093729 Parvibaculum lavamentivorans DS-1 5455060 YP_001413195.1 CDS Plav_1923 NC_009719.1 2093816 2094895 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rle:pRL90133 putative GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 2093816..2094895 Parvibaculum lavamentivorans DS-1 5453526 YP_001413196.1 CDS Plav_1924 NC_009719.1 2095008 2096102 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mba:Mbar_A0034 GDP-mannose 4,6 dehydratase; NAD-dependent epimerase/dehydratase 2095008..2096102 Parvibaculum lavamentivorans DS-1 5454521 YP_001413197.1 CDS Plav_1925 NC_009719.1 2096392 2097912 D PFAM: sugar transferase; KEGG: mes:Meso_1154 sugar transferase; sugar transferase 2096392..2097912 Parvibaculum lavamentivorans DS-1 5453638 YP_001413198.1 CDS Plav_1926 NC_009719.1 2097937 2098824 R TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: ret:RHE_CH03561 UTP-glucose-1-phosphate uridylyltransferase protein; UTP-glucose-1-phosphate uridylyltransferase complement(2097937..2098824) Parvibaculum lavamentivorans DS-1 5454109 YP_001413199.1 CDS Plav_1927 NC_009719.1 2099052 2100485 D TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin domain protein; Cupin 2 conserved barrel domain protein; KEGG: tbd:Tbd_1239 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2099052..2100485 Parvibaculum lavamentivorans DS-1 5454944 YP_001413200.1 CDS Plav_1928 NC_009719.1 2100670 2101332 D KEGG: gbe:GbCGDNIH1_0402 hypothetical protein; hypothetical protein 2100670..2101332 Parvibaculum lavamentivorans DS-1 5454453 YP_001413201.1 CDS Plav_1929 NC_009719.1 2101459 2102226 D PFAM: beta-lactamase domain protein; KEGG: mlo:mll0231 hypothetical protein; beta-lactamase domain-containing protein 2101459..2102226 Parvibaculum lavamentivorans DS-1 5454950 YP_001413202.1 CDS Plav_1930 NC_009719.1 2102215 2103096 R KEGG: pmy:Pmen_3653 metal-dependent hydrolase-like protein; metal-dependent hydrolase-like protein complement(2102215..2103096) Parvibaculum lavamentivorans DS-1 5455576 YP_001413203.1 CDS Plav_1931 NC_009719.1 2103269 2103562 D hypothetical protein 2103269..2103562 Parvibaculum lavamentivorans DS-1 5455941 YP_001413204.1 CDS Plav_1932 NC_009719.1 2103569 2105125 R PFAM: sugar transferase; KEGG: eca:ECA1420 undecaprenyl-phosphate galactosephosphotransferase; undecaprenyl-phosphate galactose phosphotransferase complement(2103569..2105125) Parvibaculum lavamentivorans DS-1 5455514 YP_001413205.1 CDS Plav_1933 NC_009719.1 2105290 2106321 D TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; KEGG: ttj:TTHB114 galactose-1-phosphate uridylyltransferase; galactose-1-phosphate uridylyltransferase 2105290..2106321 Parvibaculum lavamentivorans DS-1 5455884 YP_001413206.1 CDS Plav_1934 NC_009719.1 2106318 2107367 D TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: ttj:TTHA0595 galactokinase; galactokinase 2106318..2107367 Parvibaculum lavamentivorans DS-1 5453658 YP_001413207.1 CDS Plav_1935 NC_009719.1 2107369 2108940 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; KEGG: mag:amb2546 signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2107369..2108940) Parvibaculum lavamentivorans DS-1 5454024 YP_001413208.1 CDS Plav_1936 NC_009719.1 2109000 2110697 R PFAM: protein of unknown function DUF368; KEGG: pin:Ping_0693 inner membrane protein DUF368; hypothetical protein complement(2109000..2110697) Parvibaculum lavamentivorans DS-1 5455026 YP_001413209.1 CDS Plav_1937 NC_009719.1 2110780 2112093 R PFAM: glycoside hydrolase family 4; KEGG: rrs:RoseRS_2891 glycoside hydrolase, family 4; glycoside hydrolase complement(2110780..2112093) Parvibaculum lavamentivorans DS-1 5455200 YP_001413210.1 CDS Plav_1938 NC_009719.1 2112189 2114183 D PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: eli:ELI_03710 beta-galactosidase; beta-galactosidase 2112189..2114183 Parvibaculum lavamentivorans DS-1 5454753 YP_001413211.1 CDS Plav_1939 NC_009719.1 2114284 2115567 D TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: ppu:PP_4798 membrane-bound lytic murein transglycosylase, putative; lytic murein transglycosylase 2114284..2115567 Parvibaculum lavamentivorans DS-1 5453751 YP_001413212.1 CDS Plav_1940 NC_009719.1 2115741 2117159 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpd:RPD_2240 protein of unknown function DUF404; hypothetical protein 2115741..2117159 Parvibaculum lavamentivorans DS-1 5455017 YP_001413213.1 CDS Plav_1941 NC_009719.1 2117164 2118105 D PFAM: protein of unknown function DUF403; KEGG: rpe:RPE_2296 protein of unknown function DUF403; hypothetical protein 2117164..2118105 Parvibaculum lavamentivorans DS-1 5453776 YP_001413214.1 CDS Plav_1942 NC_009719.1 2118118 2118939 D PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bbt:BBta_5275 hypothetical protein; transglutaminase domain-containing protein 2118118..2118939 Parvibaculum lavamentivorans DS-1 5454957 YP_001413215.1 CDS Plav_1943 NC_009719.1 2119000 2119743 D PFAM: 20S proteasome A and B subunits; KEGG: bbt:BBta_5276 hypothetical protein; 20S proteasome subunits A/B 2119000..2119743 Parvibaculum lavamentivorans DS-1 5454386 YP_001413216.1 CDS Plav_1944 NC_009719.1 2119814 2121070 D hypothetical protein 2119814..2121070 Parvibaculum lavamentivorans DS-1 5455988 YP_001413217.1 CDS Plav_1945 NC_009719.1 2121070 2121357 D hypothetical protein 2121070..2121357 Parvibaculum lavamentivorans DS-1 5453554 YP_001413218.1 CDS Plav_1946 NC_009719.1 2121492 2123390 D PFAM: acyltransferase 3; KEGG: swi:Swit_4615 acyltransferase 3; acyltransferase 3 2121492..2123390 Parvibaculum lavamentivorans DS-1 5456853 YP_001413219.1 CDS Plav_1947 NC_009719.1 2123432 2125360 D PFAM: acyltransferase 3; KEGG: cch:Cag_1265 putative membrane-located cell surface saccharide saccharide acetylase protein; acyltransferase 3 2123432..2125360 Parvibaculum lavamentivorans DS-1 5454926 YP_001413220.1 CDS Plav_1948 NC_009719.1 2125366 2126064 R PFAM: Glutathione S-transferase domain; KEGG: nar:Saro_2405 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(2125366..2126064) Parvibaculum lavamentivorans DS-1 5454297 YP_001413221.1 CDS Plav_1949 NC_009719.1 2126147 2128225 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: fatty oxidation complex, alpha subunit; NAD-binding 3-hydroxyacyl-CoA dehydrogenase complement(2126147..2128225) Parvibaculum lavamentivorans DS-1 5454931 YP_001413222.1 CDS Plav_1950 NC_009719.1 2128351 2129097 D PFAM: regulatory protein TetR; KEGG: sma:SAV6701 TetR-family transcriptional regulator; TetR family transcriptional regulator 2128351..2129097 Parvibaculum lavamentivorans DS-1 5456668 YP_001413223.1 CDS Plav_1951 NC_009719.1 2129237 2130550 D PFAM: cytochrome P450; KEGG: eli:ELI_14945 cytochrome P450 family protein; cytochrome P450 2129237..2130550 Parvibaculum lavamentivorans DS-1 5457005 YP_001413224.1 CDS Plav_1952 NC_009719.1 2130859 2131989 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: swi:Swit_4150 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 2130859..2131989 Parvibaculum lavamentivorans DS-1 5456350 YP_001413225.1 CDS Plav_1953 NC_009719.1 2131990 2132298 R SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A3065 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein complement(2131990..2132298) Parvibaculum lavamentivorans DS-1 5456793 YP_001413226.1 CDS Plav_1954 NC_009719.1 2132315 2132653 R KEGG: pde:Pden_0484 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system; RelE-like cytotoxic translational repressor of toxin-antitoxin stability system complement(2132315..2132653) Parvibaculum lavamentivorans DS-1 5456406 YP_001413227.1 CDS Plav_1955 NC_009719.1 2132894 2133841 D PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pat:Patl_0102 ATPase associated with various cellular activities, AAA_5; ATPase 2132894..2133841 Parvibaculum lavamentivorans DS-1 5454991 YP_001413228.1 CDS Plav_1956 NC_009719.1 2133853 2135298 D PFAM: VWA containing CoxE family protein; KEGG: rpa:RPA0742 hypothetical protein; VWA containing CoxE family protein 2133853..2135298 Parvibaculum lavamentivorans DS-1 5454993 YP_001413229.1 CDS Plav_1957 NC_009719.1 2135563 2136558 D PFAM: protein of unknown function DUF459; KEGG: swi:Swit_3458 lipolytic enzyme, G-D-S-L family; hypothetical protein 2135563..2136558 Parvibaculum lavamentivorans DS-1 5456707 YP_001413230.1 CDS Plav_1958 NC_009719.1 2136542 2137780 D KEGG: mxa:MXAN_6502 hypothetical protein; hypothetical protein 2136542..2137780 Parvibaculum lavamentivorans DS-1 5456548 YP_001413231.1 CDS Plav_1959 NC_009719.1 2137895 2139346 D PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: swi:Swit_3460 membrane bound O-acyl transferase, MBOAT family protein; membrane bound O-acyl transferase MBOAT family protein 2137895..2139346 Parvibaculum lavamentivorans DS-1 5456665 YP_001413232.1 CDS Plav_1960 NC_009719.1 2139354 2139767 D hypothetical protein 2139354..2139767 Parvibaculum lavamentivorans DS-1 5456582 YP_001413233.1 CDS Plav_1961 NC_009719.1 2139773 2140102 R PFAM: branched-chain amino acid transport; KEGG: reh:H16_A0508 predicted membrane protein; branched-chain amino acid transport complement(2139773..2140102) Parvibaculum lavamentivorans DS-1 5453835 YP_001413234.1 CDS Plav_1962 NC_009719.1 2140099 2140821 R PFAM: AzlC family protein; KEGG: hma:rrnAC1920 branched-chain amino acid transport protein AzlC; AzlC family protein complement(2140099..2140821) Parvibaculum lavamentivorans DS-1 5454138 YP_001413235.1 CDS gltD NC_009719.1 2140898 2142319 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(2140898..2142319) Parvibaculum lavamentivorans DS-1 5456466 YP_001413236.1 CDS Plav_1964 NC_009719.1 2142320 2147062 R PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bra:BRADO6238 glutamate synthase [NADPH] large chain (NADPH-GOGAT); glutamate synthase complement(2142320..2147062) Parvibaculum lavamentivorans DS-1 5456577 YP_001413237.1 CDS Plav_1965 NC_009719.1 2147591 2148457 D hypothetical protein 2147591..2148457 Parvibaculum lavamentivorans DS-1 5455232 YP_001413238.1 CDS Plav_1966 NC_009719.1 2148505 2149542 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cyb:CYB_0540 putative low specificity L-threonine aldolase; threonine aldolase 2148505..2149542 Parvibaculum lavamentivorans DS-1 5454741 YP_001413239.1 CDS Plav_1967 NC_009719.1 2149618 2150049 D PFAM: Hpt domain protein; KEGG: rru:Rru_A2652 hypothetical protein; Hpt domain-containing protein 2149618..2150049 Parvibaculum lavamentivorans DS-1 5456102 YP_001413240.1 CDS Plav_1968 NC_009719.1 2150054 2152594 R KEGG: mag:amb1110 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase complement(2150054..2152594) Parvibaculum lavamentivorans DS-1 5456975 YP_001413241.1 CDS Plav_1969 NC_009719.1 2152824 2155505 D PFAM: CoA-binding domain protein; KEGG: csa:Csal_1092 GCN5-related N-acetyltransferase; CoA-binding domain-containing protein 2152824..2155505 Parvibaculum lavamentivorans DS-1 5456679 YP_001413242.1 CDS Plav_1971 NC_009719.1 2155558 2156022 R PFAM: heat shock protein Hsp20; KEGG: sme:SMc04040 probable heat shock protein; heat shock protein Hsp20 complement(2155558..2156022) Parvibaculum lavamentivorans DS-1 5455556 YP_001413243.1 CDS Plav_1972 NC_009719.1 2156213 2157424 D PFAM: Extracellular ligand-binding receptor; KEGG: pub:SAR11_1361 Leu/Ile/Val-binding protein precursor; extracellular ligand-binding receptor 2156213..2157424 Parvibaculum lavamentivorans DS-1 5453382 YP_001413244.1 CDS Plav_1973 NC_009719.1 2157444 2158346 D PFAM: inner-membrane translocator; KEGG: pub:SAR11_1360 probable high-affinity branched-chain amino acid transport permease protein; inner-membrane translocator 2157444..2158346 Parvibaculum lavamentivorans DS-1 5454930 YP_001413245.1 CDS Plav_1974 NC_009719.1 2158343 2159296 D PFAM: inner-membrane translocator; KEGG: pub:SAR11_1359 probable high-affinity branched-chain amino acid transport permease protein; inner-membrane translocator 2158343..2159296 Parvibaculum lavamentivorans DS-1 5456363 YP_001413246.1 CDS Plav_1975 NC_009719.1 2159293 2160036 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pub:SAR11_1358 ATP-binding protein of ABC transporter NatA; ABC transporter-like protein 2159293..2160036 Parvibaculum lavamentivorans DS-1 5454315 YP_001413247.1 CDS Plav_1976 NC_009719.1 2160036 2160896 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pub:SAR11_1357 ATP-binding protein of branched-chain amino acid ABC transporter; ABC transporter-like protein 2160036..2160896 Parvibaculum lavamentivorans DS-1 5455227 YP_001413248.1 CDS Plav_1977 NC_009719.1 2161008 2161787 D hypothetical protein 2161008..2161787 Parvibaculum lavamentivorans DS-1 5455357 YP_001413249.1 CDS Plav_1978 NC_009719.1 2161964 2162440 D KEGG: dme:Dmel_CG13482 CG13482; hypothetical protein 2161964..2162440 Parvibaculum lavamentivorans DS-1 5455185 YP_001413250.1 CDS Plav_1979 NC_009719.1 2162501 2164057 R PFAM: carboxyl transferase; KEGG: bja:blr3940 putative propionyl-CoA carboxylase beta chain; propionyl-CoA carboxylase complement(2162501..2164057) Parvibaculum lavamentivorans DS-1 5456476 YP_001413251.1 CDS Plav_1980 NC_009719.1 2164153 2164566 D hypothetical protein 2164153..2164566 Parvibaculum lavamentivorans DS-1 5455414 YP_001413252.1 CDS Plav_1981 NC_009719.1 2164599 2165510 D PFAM: alpha/beta hydrolase fold; KEGG: rpa:RPA0888 putative lysophospholipase L2; alpha/beta hydrolase fold protein 2164599..2165510 Parvibaculum lavamentivorans DS-1 5455309 YP_001413253.1 CDS Plav_1982 NC_009719.1 2165559 2166365 R TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: pen:PSEEN3013 inositol monophosphatase; histidinol-phosphate phosphatase complement(2165559..2166365) Parvibaculum lavamentivorans DS-1 5456499 YP_001413254.1 CDS Plav_1983 NC_009719.1 2166482 2167489 R PFAM: amidohydrolase 2; KEGG: hne:HNE_1399 amidohydrolase family protein; amidohydrolase 2 complement(2166482..2167489) Parvibaculum lavamentivorans DS-1 5455801 YP_001413255.1 CDS Plav_1984 NC_009719.1 2167654 2169501 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: sal:Sala_2303 GTP-binding protein TypA; GTP-binding protein TypA complement(2167654..2169501) Parvibaculum lavamentivorans DS-1 5456261 YP_001413256.1 CDS Plav_1985 NC_009719.1 2169654 2170061 R KEGG: bbt:BBta_0772 hypothetical protein; hypothetical protein complement(2169654..2170061) Parvibaculum lavamentivorans DS-1 5455431 YP_001413257.1 CDS Plav_1986 NC_009719.1 2170073 2170429 R KEGG: bbt:BBta_0773 hypothetical protein; hypothetical protein complement(2170073..2170429) Parvibaculum lavamentivorans DS-1 5455727 YP_001413258.1 CDS Plav_1987 NC_009719.1 2170469 2171320 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rpb:RPB_0799 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein complement(2170469..2171320) Parvibaculum lavamentivorans DS-1 5454896 YP_001413259.1 CDS Plav_1988 NC_009719.1 2171413 2172003 R PFAM: YceI family protein; KEGG: rde:RD1_3042 hypothetical protein; hypothetical protein complement(2171413..2172003) Parvibaculum lavamentivorans DS-1 5455490 YP_001413260.1 CDS Plav_1989 NC_009719.1 2172222 2173478 D PFAM: major facilitator superfamily MFS_1; KEGG: rsh:Rsph17029_0041 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2172222..2173478 Parvibaculum lavamentivorans DS-1 5456108 YP_001413261.1 CDS Plav_1990 NC_009719.1 2173490 2174038 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: tbd:Tbd_0524 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 2173490..2174038 Parvibaculum lavamentivorans DS-1 5456401 YP_001413262.1 CDS Plav_1991 NC_009719.1 2174035 2174733 D KEGG: mmr:Mmar10_1174 hypothetical protein; hypothetical protein 2174035..2174733 Parvibaculum lavamentivorans DS-1 5456609 YP_001413263.1 CDS Plav_1992 NC_009719.1 2175063 2176169 R PFAM: glycosyl transferase group 1; KEGG: mag:amb0265 glycosyltransferase; group 1 glycosyl transferase complement(2175063..2176169) Parvibaculum lavamentivorans DS-1 5456676 YP_001413264.1 CDS Plav_1993 NC_009719.1 2176261 2177229 R PFAM: metallophosphoesterase; KEGG: mag:amb0266 hypothetical protein; metallophosphoesterase complement(2176261..2177229) Parvibaculum lavamentivorans DS-1 5455561 YP_001413265.1 CDS Plav_1994 NC_009719.1 2177558 2178466 D PFAM: diacylglycerol kinase catalytic region; KEGG: mag:amb0267 Sphingosine kinase and enzyme related to eukaryotic diacylglycerol kinase; diacylglycerol kinase catalytic subunit 2177558..2178466 Parvibaculum lavamentivorans DS-1 5453945 YP_001413266.1 CDS Plav_1995 NC_009719.1 2178463 2180055 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: hch:HCH_00332 glutamate synthase domain 2; ferredoxin-dependent glutamate synthase complement(2178463..2180055) Parvibaculum lavamentivorans DS-1 5455774 YP_001413267.1 CDS Plav_1996 NC_009719.1 2180080 2181012 R PFAM: Lytic transglycosylase catalytic; KEGG: gox:GOX2386 hypothetical protein; lytic transglycosylase catalytic subunit complement(2180080..2181012) Parvibaculum lavamentivorans DS-1 5453713 YP_001413268.1 CDS Plav_1997 NC_009719.1 2181397 2182419 R PFAM: N-formylglutamate amidohydrolase; KEGG: mag:amb2177 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase complement(2181397..2182419) Parvibaculum lavamentivorans DS-1 5455724 YP_001413269.1 CDS Plav_1998 NC_009719.1 2182658 2183020 D PFAM: response regulator receiver; KEGG: mes:Meso_2750 response regulator receiver protein; response regulator receiver protein 2182658..2183020 Parvibaculum lavamentivorans DS-1 5455292 YP_001413270.1 CDS Plav_1999 NC_009719.1 2183360 2184532 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA7103 putative HlyD-like secretion protein; RND family efflux transporter MFP subunit 2183360..2184532 Parvibaculum lavamentivorans DS-1 5454282 YP_001413271.1 CDS Plav_2000 NC_009719.1 2184556 2187630 D PFAM: acriflavin resistance protein; KEGG: azo:azo3134 RND efflux transporter, permease protein; acriflavin resistance protein 2184556..2187630 Parvibaculum lavamentivorans DS-1 5454430 YP_001413272.1 CDS Plav_2001 NC_009719.1 2187643 2188866 R KEGG: mgm:Mmc1_0538 hypothetical protein; hypothetical protein complement(2187643..2188866) Parvibaculum lavamentivorans DS-1 5455839 YP_001413273.1 CDS Plav_2002 NC_009719.1 2188943 2189776 R KEGG: abo:ABO_1014 hypothetical protein; hypothetical protein complement(2188943..2189776) Parvibaculum lavamentivorans DS-1 5456612 YP_001413274.1 CDS Plav_2003 NC_009719.1 2189851 2190909 R hypothetical protein complement(2189851..2190909) Parvibaculum lavamentivorans DS-1 5455699 YP_001413275.1 CDS Plav_2004 NC_009719.1 2190988 2191824 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reh:H16_A0037 alpha-ketoglutarate-dependent taurine dioxygenase; taurine dioxygenase complement(2190988..2191824) Parvibaculum lavamentivorans DS-1 5456754 YP_001413276.1 CDS Plav_2005 NC_009719.1 2191844 2192452 R PFAM: Glutathione S-transferase domain; KEGG: bja:bll5700 hypothetical glutathione S-transferase like protein; glutathione S-transferase domain-containing protein complement(2191844..2192452) Parvibaculum lavamentivorans DS-1 5453663 YP_001413277.1 CDS Plav_2006 NC_009719.1 2192506 2194890 R KEGG: azo:azo2253 probable exporter of RND superfamily; RND superfamily exporter complement(2192506..2194890) Parvibaculum lavamentivorans DS-1 5453351 YP_001413278.1 CDS Plav_2007 NC_009719.1 2194988 2196373 D PFAM: protein of unknown function DUF1329; KEGG: shw:Sputw3181_1811 protein of unknown function DUF1329; hypothetical protein 2194988..2196373 Parvibaculum lavamentivorans DS-1 5456807 YP_001413279.1 CDS Plav_2008 NC_009719.1 2196414 2197100 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A0980 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(2196414..2197100) Parvibaculum lavamentivorans DS-1 5454238 YP_001413280.1 CDS Plav_2009 NC_009719.1 2197118 2198260 R KEGG: bbt:BBta_2931 hypothetical protein; hypothetical protein complement(2197118..2198260) Parvibaculum lavamentivorans DS-1 5453717 YP_001413281.1 CDS Plav_2010 NC_009719.1 2198265 2198678 R PFAM: protein of unknown function DUF35; KEGG: rpb:RPB_3587 protein of unknown function DUF35; hypothetical protein complement(2198265..2198678) Parvibaculum lavamentivorans DS-1 5454220 YP_001413282.1 CDS Plav_2011 NC_009719.1 2198837 2199196 D hypothetical protein 2198837..2199196 Parvibaculum lavamentivorans DS-1 5455201 YP_001413283.1 CDS Plav_2012 NC_009719.1 2199200 2199871 R PFAM: nitroreductase; KEGG: bam:Bamb_6027 nitroreductase; nitroreductase complement(2199200..2199871) Parvibaculum lavamentivorans DS-1 5453805 YP_001413284.1 CDS Plav_2013 NC_009719.1 2199995 2201077 D KEGG: hne:HNE_1437 hypothetical protein; hypothetical protein 2199995..2201077 Parvibaculum lavamentivorans DS-1 5455410 YP_001413285.1 CDS Plav_2014 NC_009719.1 2201083 2202873 D PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein; sulfatase 2201083..2202873 Parvibaculum lavamentivorans DS-1 5455871 YP_001413286.1 CDS Plav_2015 NC_009719.1 2202879 2203271 R PFAM: regulatory protein LuxR; KEGG: rpe:RPE_1121 transcriptional regulator, LuxR family; response regulator receiver protein complement(2202879..2203271) Parvibaculum lavamentivorans DS-1 5455323 YP_001413287.1 CDS Plav_2016 NC_009719.1 2203264 2204289 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bte:BTH_I2358 lipase/esterase; alpha/beta hydrolase domain-containing protein complement(2203264..2204289) Parvibaculum lavamentivorans DS-1 5455571 YP_001413288.1 CDS Plav_2017 NC_009719.1 2204461 2205903 D hypothetical protein 2204461..2205903 Parvibaculum lavamentivorans DS-1 5456982 YP_001413289.1 CDS Plav_2018 NC_009719.1 2205900 2207135 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nfa:nfa54220 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2205900..2207135) Parvibaculum lavamentivorans DS-1 5454573 YP_001413290.1 CDS Plav_2019 NC_009719.1 2207300 2208088 D KEGG: maq:Maqu_3542 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2207300..2208088 Parvibaculum lavamentivorans DS-1 5455582 YP_001413291.1 CDS Plav_2020 NC_009719.1 2208186 2209535 D PFAM: major facilitator superfamily MFS_1; KEGG: mmr:Mmar10_2520 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2208186..2209535 Parvibaculum lavamentivorans DS-1 5457047 YP_001413292.1 CDS Plav_2021 NC_009719.1 2209545 2209769 R hypothetical protein complement(2209545..2209769) Parvibaculum lavamentivorans DS-1 5455523 YP_001413293.1 CDS Plav_2022 NC_009719.1 2209742 2210707 R PFAM: alpha/beta hydrolase fold; KEGG: hne:HNE_3153 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein complement(2209742..2210707) Parvibaculum lavamentivorans DS-1 5455488 YP_001413294.1 CDS Plav_2023 NC_009719.1 2210768 2211247 R PFAM: response regulator receiver; KEGG: response regulator/sensor histidine kinase; response regulator receiver protein complement(2210768..2211247) Parvibaculum lavamentivorans DS-1 5453503 YP_001413295.1 CDS Plav_2024 NC_009719.1 2211244 2212737 R PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: bms:BR1659 sensor histidine kinase; signal transduction histidine kinase complement(2211244..2212737) Parvibaculum lavamentivorans DS-1 5456808 YP_001413296.1 CDS Plav_2025 NC_009719.1 2213047 2213172 D KEGG: nwi:Nwi_0983 ribosomal protein L36; 50S ribosomal protein L36 2213047..2213172 Parvibaculum lavamentivorans DS-1 5455220 YP_001413297.1 CDS Plav_2026 NC_009719.1 2213262 2213873 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hydrolase, haloacid dehalogenase-like family; K07025 putative hydrolase of the HAD superfamily; HAD family hydrolase 2213262..2213873 Parvibaculum lavamentivorans DS-1 5454692 YP_001413298.1 CDS Plav_2027 NC_009719.1 2213980 2215035 D PFAM: Saccharopine dehydrogenase; KEGG: ilo:IL1477 hypothetical protein; saccharopine dehydrogenase 2213980..2215035 Parvibaculum lavamentivorans DS-1 5456232 YP_001413299.1 CDS Plav_2028 NC_009719.1 2215037 2215654 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_0984 TPR repeat protein; hypothetical protein 2215037..2215654 Parvibaculum lavamentivorans DS-1 5455228 YP_001413300.1 CDS Plav_2029 NC_009719.1 2215702 2216733 D PFAM: alpha/beta hydrolase fold; KEGG: nha:Nham_1217 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2215702..2216733 Parvibaculum lavamentivorans DS-1 5454479 YP_001413301.1 CDS Plav_2030 NC_009719.1 2216768 2218198 R TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; KEGG: nha:Nham_1218 pyruvate kinase; pyruvate kinase complement(2216768..2218198) Parvibaculum lavamentivorans DS-1 5456180 YP_001413302.1 CDS Plav_2031 NC_009719.1 2218182 2219525 R PFAM: MOFRL domain protein; KEGG: bbt:BBta_7083 putative hydroxypyruvate reductase; hydroxypyruvate reductase complement(2218182..2219525) Parvibaculum lavamentivorans DS-1 5455409 YP_001413303.1 CDS Plav_2032 NC_009719.1 2219546 2220385 D PFAM: N-formylglutamate amidohydrolase; KEGG: atc:AGR_L_2148 hypothetical protein; N-formylglutamate amidohydrolase 2219546..2220385 Parvibaculum lavamentivorans DS-1 5455955 YP_001413304.1 CDS Plav_2033 NC_009719.1 2220382 2220708 D PFAM: protein of unknown function DUF1244; KEGG: xcb:XC_1932 hypothetical protein; hypothetical protein 2220382..2220708 Parvibaculum lavamentivorans DS-1 5454229 YP_001413305.1 CDS Plav_2034 NC_009719.1 2220825 2221082 D KEGG: bbt:BBta_6866 hypothetical protein; hypothetical protein 2220825..2221082 Parvibaculum lavamentivorans DS-1 5455698 YP_001413306.1 CDS Plav_2035 NC_009719.1 2221154 2222914 D PFAM: alpha/beta hydrolase fold; regulatory protein LuxR; KEGG: rha:RHA1_ro04883 probable hydrolase; alpha/beta hydrolase fold protein 2221154..2222914 Parvibaculum lavamentivorans DS-1 5453951 YP_001413307.1 CDS Plav_2036 NC_009719.1 2223058 2224824 D PFAM: alpha/beta hydrolase fold; regulatory protein LuxR; KEGG: mxa:MXAN_6875 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein 2223058..2224824 Parvibaculum lavamentivorans DS-1 5454308 YP_001413308.1 CDS Plav_2037 NC_009719.1 2224940 2225536 D KEGG: rci:RRC32 hypothetical protein; hypothetical protein 2224940..2225536 Parvibaculum lavamentivorans DS-1 5455752 YP_001413309.1 CDS Plav_2038 NC_009719.1 2225698 2226333 D PFAM: GCN5-related N-acetyltransferase; KEGG: hne:HNE_1605 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2225698..2226333 Parvibaculum lavamentivorans DS-1 5453457 YP_001413310.1 CDS Plav_2039 NC_009719.1 2226354 2227082 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bra:BRADO2432 nitrogen fixation regulation protein FixK, Crp/Fnr family; CRP/FNR family transcriptional regulator complement(2226354..2227082) Parvibaculum lavamentivorans DS-1 5455398 YP_001413311.1 CDS Plav_2040 NC_009719.1 2227205 2227609 R PFAM: response regulator receiver; KEGG: dar:Daro_3108 regulatory protein, LuxR:response regulator receiver; response regulator receiver protein complement(2227205..2227609) Parvibaculum lavamentivorans DS-1 5455824 YP_001413312.1 CDS Plav_2041 NC_009719.1 2227682 2228326 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: swi:Swit_5293 response regulator receiver protein; response regulator receiver protein complement(2227682..2228326) Parvibaculum lavamentivorans DS-1 5453470 YP_001413313.1 CDS Plav_2042 NC_009719.1 2228323 2229462 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: mlo:mll6607 two-component, nitrogen fixation sensor protein FixL; PAS/PAC sensor signal transduction histidine kinase complement(2228323..2229462) Parvibaculum lavamentivorans DS-1 5453765 YP_001413314.1 CDS Plav_2043 NC_009719.1 2229551 2229868 R hypothetical protein complement(2229551..2229868) Parvibaculum lavamentivorans DS-1 5454291 YP_001413315.1 CDS Plav_2044 NC_009719.1 2229960 2230838 D PFAM: Ion transport protein; KEGG: jan:Jann_0087 ion transport protein; Ion transport protein 2229960..2230838 Parvibaculum lavamentivorans DS-1 5454897 YP_001413316.1 CDS Plav_2045 NC_009719.1 2231419 2231736 D KEGG: gme:Gmet_2969 hypothetical protein; hypothetical protein 2231419..2231736 Parvibaculum lavamentivorans DS-1 5454348 YP_001413317.1 CDS Plav_2046 NC_009719.1 2231733 2232089 D KEGG: sme:SMc01416 hypothetical protein; hypothetical protein 2231733..2232089 Parvibaculum lavamentivorans DS-1 5455619 YP_001413318.1 CDS Plav_2047 NC_009719.1 2232411 2233607 D KEGG: rpe:RPE_2464 hypothetical protein; hypothetical protein 2232411..2233607 Parvibaculum lavamentivorans DS-1 5454921 YP_001413319.1 CDS Plav_2048 NC_009719.1 2233580 2234113 D hypothetical protein 2233580..2234113 Parvibaculum lavamentivorans DS-1 5456309 YP_001413320.1 CDS Plav_2049 NC_009719.1 2234110 2236005 D KEGG: rru:Rru_A0809 hypothetical protein; hypothetical protein 2234110..2236005 Parvibaculum lavamentivorans DS-1 5455451 YP_001413321.1 CDS Plav_2050 NC_009719.1 2236458 2237993 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mlo:mll3001 response regulatory protein; two component sigma-54 specific Fis family transcriptional regulator complement(2236458..2237993) Parvibaculum lavamentivorans DS-1 5455332 YP_001413322.1 CDS Plav_2051 NC_009719.1 2238359 2239192 D PFAM: OmpA/MotB domain protein; KEGG: rru:Rru_A3328 OmpA/MotB; OmpA/MotB domain-containing protein 2238359..2239192 Parvibaculum lavamentivorans DS-1 5455667 YP_001413323.1 CDS Plav_2052 NC_009719.1 2239316 2241160 D TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: bov:BOV_A0076 oligoendopeptidase F; pepF/M3 family oligoendopeptidase 2239316..2241160 Parvibaculum lavamentivorans DS-1 5455356 YP_001413324.1 CDS Plav_2053 NC_009719.1 2241157 2242542 D PFAM: ABC-1 domain protein; KEGG: hne:HNE_0567 ABC1 family protein; hypothetical protein 2241157..2242542 Parvibaculum lavamentivorans DS-1 5455486 YP_001413325.1 CDS Plav_2054 NC_009719.1 2242591 2243034 D PFAM: thioesterase superfamily protein; KEGG: hypothetical protein; thioesterase superfamily protein 2242591..2243034 Parvibaculum lavamentivorans DS-1 5454150 YP_001413326.1 CDS Plav_2055 NC_009719.1 2243031 2243999 D PFAM: alpha/beta hydrolase fold; KEGG: hne:HNE_3153 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein 2243031..2243999 Parvibaculum lavamentivorans DS-1 5454191 YP_001413327.1 CDS Plav_2056 NC_009719.1 2244080 2245606 D PFAM: amidohydrolase 2; KEGG: swi:Swit_1765 amidohydrolase 2; amidohydrolase 2 2244080..2245606 Parvibaculum lavamentivorans DS-1 5454617 YP_001413328.1 CDS Plav_2057 NC_009719.1 2245758 2245901 D PFAM: aa3 type cytochrome c oxidase subunit IV; aa3 type cytochrome c oxidase subunit IV 2245758..2245901 Parvibaculum lavamentivorans DS-1 5454443 YP_001413329.1 CDS Plav_2058 NC_009719.1 2246029 2247162 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: nwi:Nwi_0995 alanine dehydrogenase/PNT; NAD(P)(+) transhydrogenase 2246029..2247162 Parvibaculum lavamentivorans DS-1 5455221 YP_001413330.1 CDS Plav_2059 NC_009719.1 2247162 2247479 D KEGG: rpc:RPC_3967 NAD(P) transhydrogenase subunit alpha part; NAD(P) transhydrogenase subunit alpha 2247162..2247479 Parvibaculum lavamentivorans DS-1 5453646 YP_001413331.1 CDS Plav_2060 NC_009719.1 2247493 2248899 D PFAM: NAD(P) transhydrogenase beta subunit; KEGG: bov:BOV_A0911 NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 2247493..2248899 Parvibaculum lavamentivorans DS-1 5455505 YP_001413332.1 CDS Plav_2061 NC_009719.1 2249002 2249379 D KEGG: sal:Sala_2029 hypothetical protein; hypothetical protein 2249002..2249379 Parvibaculum lavamentivorans DS-1 5456722 YP_001413333.1 CDS Plav_2062 NC_009719.1 2249384 2249734 D KEGG: sil:SPO2052 hypothetical protein; hypothetical protein 2249384..2249734 Parvibaculum lavamentivorans DS-1 5456333 YP_001413334.1 CDS Plav_2063 NC_009719.1 2249736 2250212 D PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV3622 hypothetical protein; N-acetyltransferase GCN5 2249736..2250212 Parvibaculum lavamentivorans DS-1 5454649 YP_001413335.1 CDS Plav_2064 NC_009719.1 2250386 2252590 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pst:PSPTO_3462 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2250386..2252590 Parvibaculum lavamentivorans DS-1 5456770 YP_001413336.1 CDS Plav_2065 NC_009719.1 2252613 2253773 D PFAM: PepSY-associated TM helix domain protein; KEGG: hne:HNE_2173 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 2252613..2253773 Parvibaculum lavamentivorans DS-1 5454305 YP_001413337.1 CDS Plav_2066 NC_009719.1 2253770 2253955 D KEGG: hypothetical protein; hypothetical protein 2253770..2253955 Parvibaculum lavamentivorans DS-1 5454860 YP_001413338.1 CDS Plav_2067 NC_009719.1 2254020 2254241 R PFAM: ribosomal protein S21; KEGG: rle:RL4130 putative 30S ribosomal protein S21; 30S ribosomal protein S21 complement(2254020..2254241) Parvibaculum lavamentivorans DS-1 5456398 YP_001413339.1 CDS Plav_2068 NC_009719.1 2254427 2255050 D TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; KEGG: gbe:GbCGDNIH1_0482 peptide deformylase; peptide deformylase 2254427..2255050 Parvibaculum lavamentivorans DS-1 5456358 YP_001413340.1 CDS Plav_2069 NC_009719.1 2255043 2255738 D TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein; KEGG: jan:Jann_3890 RpsU-divergently transcribed; rpsU-divergently transcribed protein 2255043..2255738 Parvibaculum lavamentivorans DS-1 5454574 YP_001413341.1 CDS Plav_2070 NC_009719.1 2255735 2256370 R PFAM: protein of unknown function DUF1457; KEGG: rpb:RPB_2151 hypothetical protein; hypothetical protein complement(2255735..2256370) Parvibaculum lavamentivorans DS-1 5454819 YP_001413342.1 CDS Plav_2071 NC_009719.1 2256428 2257537 R TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: sil:SPO0892 phosphoribosylaminoimidazole carboxylase, ATPase subunit; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(2256428..2257537) Parvibaculum lavamentivorans DS-1 5456868 YP_001413343.1 CDS Plav_2072 NC_009719.1 2257537 2258076 R TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: swi:Swit_3132 phosphoribosylaminoimidazole carboxylase, catalytic subunit; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(2257537..2258076) Parvibaculum lavamentivorans DS-1 5455644 YP_001413344.1 CDS Plav_2073 NC_009719.1 2258249 2259373 R TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1349 sulfate ABC transporter, ATP-binding protein; sulfate ABC transporter ATPase complement(2258249..2259373) Parvibaculum lavamentivorans DS-1 5453772 YP_001413345.1 CDS Plav_2074 NC_009719.1 2259351 2260184 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0109 sulfate ABC transporter, permease protein; sulfate ABC transporter permease complement(2259351..2260184) Parvibaculum lavamentivorans DS-1 5456862 YP_001413346.1 CDS Plav_2075 NC_009719.1 2260194 2261042 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb21132 putative sulfate uptake ABC transporter permease protein; sulfate ABC transporter permease complement(2260194..2261042) Parvibaculum lavamentivorans DS-1 5454217 YP_001413347.1 CDS Plav_2076 NC_009719.1 2261067 2262479 R PFAM: phosphate-selective porin O and P; KEGG: nmu:Nmul_A0898 phosphate-selective porin O and P; phosphate-selective porin O and P complement(2261067..2262479) Parvibaculum lavamentivorans DS-1 5455572 YP_001413348.1 CDS Plav_2077 NC_009719.1 2262530 2263555 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PE00259 probable sulfate uptake ABC transporter, substrate-binding protein; sulfate ABC transporter substrate-binding protein complement(2262530..2263555) Parvibaculum lavamentivorans DS-1 5455213 YP_001413349.1 CDS Plav_2078 NC_009719.1 2263618 2264064 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ret:RHE_CH01133 putative transcriptional regulator protein; BadM/Rrf2 family transcriptional regulator complement(2263618..2264064) Parvibaculum lavamentivorans DS-1 5456240 YP_001413350.1 CDS Plav_2079 NC_009719.1 2264308 2265039 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mmr:Mmar10_2568 diguanylate cyclase; diguanylate cyclase 2264308..2265039 Parvibaculum lavamentivorans DS-1 5454879 YP_001413351.1 CDS Plav_2080 NC_009719.1 2265045 2265251 R PFAM: protein of unknown function DUF465; KEGG: rpc:RPC_3958 protein of unknown function DUF465; hypothetical protein complement(2265045..2265251) Parvibaculum lavamentivorans DS-1 5456483 YP_001413352.1 CDS Plav_2081 NC_009719.1 2265248 2265880 R TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: mmr:Mmar10_2570 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2265248..2265880) Parvibaculum lavamentivorans DS-1 5454273 YP_001413353.1 CDS Plav_2082 NC_009719.1 2266016 2266195 D PFAM: protein of unknown function DUF465; KEGG: nwi:Nwi_1004 protein of unknown function DUF465; hypothetical protein 2266016..2266195 Parvibaculum lavamentivorans DS-1 5456815 YP_001413354.1 CDS Plav_2083 NC_009719.1 2266279 2267907 R PFAM: AMP-dependent synthetase and ligase; KEGG: mag:amb2501 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; AMP-dependent synthetase and ligase complement(2266279..2267907) Parvibaculum lavamentivorans DS-1 5454407 YP_001413355.1 CDS Plav_2084 NC_009719.1 2268041 2269939 D PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mll5286 acetyl-CoA synthetase; AMP-dependent synthetase and ligase 2268041..2269939 Parvibaculum lavamentivorans DS-1 5456289 YP_001413356.1 CDS Plav_2085 NC_009719.1 2270078 2271100 R PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV7169 putative zinc-containing dehydrogenase; alcohol dehydrogenase complement(2270078..2271100) Parvibaculum lavamentivorans DS-1 5456457 YP_001413357.1 CDS Plav_2086 NC_009719.1 2271156 2271623 R PFAM: regulatory protein MarR; KEGG: bja:bll7366 transcriptional regulatory protein; MarR family transcriptional regulator complement(2271156..2271623) Parvibaculum lavamentivorans DS-1 5453455 YP_001413358.1 CDS Plav_2087 NC_009719.1 2271689 2272123 D hypothetical protein 2271689..2272123 Parvibaculum lavamentivorans DS-1 5454801 YP_001413359.1 CDS Plav_2088 NC_009719.1 2272120 2272566 D PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_1696 phenylacetic acid degradation-related protein; thioesterase superfamily protein 2272120..2272566 Parvibaculum lavamentivorans DS-1 5456557 YP_001413360.1 CDS Plav_2089 NC_009719.1 2272763 2273593 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mes:Meso_3434 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2272763..2273593 Parvibaculum lavamentivorans DS-1 5456506 YP_001413361.1 CDS Plav_2090 NC_009719.1 2273874 2274602 R PFAM: protein of unknown function DUF1013; KEGG: bra:BRADO6589 hypothetical protein; hypothetical protein complement(2273874..2274602) Parvibaculum lavamentivorans DS-1 5456880 YP_001413362.1 CDS Plav_2091 NC_009719.1 2274790 2275350 R KEGG: dar:Daro_2057 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal complement(2274790..2275350) Parvibaculum lavamentivorans DS-1 5453383 YP_001413363.1 CDS Plav_2092 NC_009719.1 2275455 2276453 R TIGRFAM: Quinone oxidoreductase putative PIG3; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mes:Meso_3406 alcohol dehydrogenase, zinc-binding; quinone oxidoreductase putative PIG3 complement(2275455..2276453) Parvibaculum lavamentivorans DS-1 5454187 YP_001413364.1 CDS Plav_2093 NC_009719.1 2276551 2276751 D PFAM: protein of unknown function DUF1192; KEGG: mag:amb2678 hypothetical protein; hypothetical protein 2276551..2276751 Parvibaculum lavamentivorans DS-1 5456477 YP_001413365.1 CDS Plav_2094 NC_009719.1 2277111 2277701 D PFAM: protein of unknown function DUF1465; KEGG: hypothetical protein; hypothetical protein 2277111..2277701 Parvibaculum lavamentivorans DS-1 5453454 YP_001413366.1 CDS Plav_2095 NC_009719.1 2277773 2277994 R PFAM: ribosomal protein L31; KEGG: 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31; 50S ribosomal protein L31 complement(2277773..2277994) Parvibaculum lavamentivorans DS-1 5455159 YP_001413367.1 CDS Plav_2096 NC_009719.1 2278311 2280161 D TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_4490 ABC transporter, ATP-binding/permease protein; lipid ABC transporter ATPase/inner membrane protein 2278311..2280161 Parvibaculum lavamentivorans DS-1 5455368 YP_001413368.1 CDS Plav_2097 NC_009719.1 2280181 2281272 D PFAM: Arylesterase; KEGG: lic:LIC10347 paraoxonase; arylesterase 2280181..2281272 Parvibaculum lavamentivorans DS-1 5455652 YP_001413369.1 CDS Plav_2098 NC_009719.1 2281274 2282290 R PFAM: OmpA/MotB domain protein; KEGG: bmb:BruAb1_1699 OmpA family protein; OmpA/MotB domain-containing protein complement(2281274..2282290) Parvibaculum lavamentivorans DS-1 5454385 YP_001413370.1 CDS Plav_2099 NC_009719.1 2282297 2283259 R KEGG: nha:Nham_3541 hypothetical protein; hypothetical protein complement(2282297..2283259) Parvibaculum lavamentivorans DS-1 5454011 YP_001413371.1 CDS Plav_2100 NC_009719.1 2283291 2283770 R KEGG: mag:amb1287 lysophospholipase; hypothetical protein complement(2283291..2283770) Parvibaculum lavamentivorans DS-1 5455013 YP_001413372.1 CDS Plav_2101 NC_009719.1 2283863 2284666 R PFAM: inositol monophosphatase; KEGG: bbt:BBta_6932 inositol monophosphatase; inositol-phosphate phosphatase complement(2283863..2284666) Parvibaculum lavamentivorans DS-1 5453428 YP_001413373.1 CDS Plav_2102 NC_009719.1 2284677 2285240 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2284677..2285240) Parvibaculum lavamentivorans DS-1 5456829 YP_001413374.1 CDS Plav_2103 NC_009719.1 2285368 2286441 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(2285368..2286441) Parvibaculum lavamentivorans DS-1 5455796 YP_001413375.1 CDS Plav_2104 NC_009719.1 2286438 2287109 R TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; KEGG: rru:Rru_A1080 thiamine-phosphate diphosphorylase; thiamine-phosphate pyrophosphorylase complement(2286438..2287109) Parvibaculum lavamentivorans DS-1 5454203 YP_001413376.1 CDS Plav_2105 NC_009719.1 2287196 2288215 R PFAM: fructose-bisphosphate aldolase class-I; KEGG: mes:Meso_3436 fructose-bisphosphate aldolase, class-I; fructose-bisphosphate aldolase complement(2287196..2288215) Parvibaculum lavamentivorans DS-1 5454713 YP_001413377.1 CDS Plav_2106 NC_009719.1 2288249 2289457 R PFAM: phosphoglycerate kinase; KEGG: mes:Meso_3437 phosphoglycerate kinase; phosphoglycerate kinase complement(2288249..2289457) Parvibaculum lavamentivorans DS-1 5455341 YP_001413378.1 CDS Plav_2107 NC_009719.1 2289476 2290483 R TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: bra:BRADO1124 glyceraldehyde-3-phosphate dehydrogenase (GAPDH); glyceraldehyde-3-phosphate dehydrogenase complement(2289476..2290483) Parvibaculum lavamentivorans DS-1 5454279 YP_001413379.1 CDS Plav_2108 NC_009719.1 2290507 2292561 R TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: sme:SMc03978 transketolase; transketolase complement(2290507..2292561) Parvibaculum lavamentivorans DS-1 5456611 YP_001413380.1 CDS Plav_2109 NC_009719.1 2292882 2293148 D KEGG: hne:HNE_3456 hypothetical protein; hypothetical protein 2292882..2293148 Parvibaculum lavamentivorans DS-1 5456526 YP_001413381.1 CDS Plav_2110 NC_009719.1 2293174 2293533 D PFAM: protein of unknown function DUF710; KEGG: bra:BRADO1128 hypothetical protein; hypothetical protein 2293174..2293533 Parvibaculum lavamentivorans DS-1 5455651 YP_001413382.1 CDS Plav_2111 NC_009719.1 2293784 2294383 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: nha:Nham_3528 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 2293784..2294383 Parvibaculum lavamentivorans DS-1 5456936 YP_001413383.1 CDS Plav_2112 NC_009719.1 2294380 2295192 D PFAM: metallophosphoesterase; KEGG: bra:BRADO1139 metallo-phosphoesterase; metallophosphoesterase 2294380..2295192 Parvibaculum lavamentivorans DS-1 5455195 YP_001413384.1 CDS Plav_2113 NC_009719.1 2295199 2296224 D KEGG: aci:ACIAD0599 hypothetical protein; hypothetical protein 2295199..2296224 Parvibaculum lavamentivorans DS-1 5453627 YP_001413385.1 CDS Plav_2114 NC_009719.1 2296581 2297327 D PFAM: protein of unknown function DUF28; KEGG: rpa:RPA1097 hypothetical protein; hypothetical protein 2296581..2297327 Parvibaculum lavamentivorans DS-1 5456185 YP_001413386.1 CDS Plav_2115 NC_009719.1 2297431 2297958 D TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: atc:AGR_L_2221 crossover junction endodeoxyribonuclease RuvC (holliday junction nuclease RuvC); crossover junction endodeoxyribonuclease RuvC 2297431..2297958 Parvibaculum lavamentivorans DS-1 5454487 YP_001413387.1 CDS Plav_2116 NC_009719.1 2297955 2298572 D TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA domain I; KEGG: nha:Nham_3522 Holliday junction DNA helicase RuvA; Holliday junction DNA helicase RuvA 2297955..2298572 Parvibaculum lavamentivorans DS-1 5453578 YP_001413388.1 CDS ruvB NC_009719.1 2298569 2299627 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2298569..2299627 Parvibaculum lavamentivorans DS-1 5454486 YP_001413389.1 CDS Plav_2118 NC_009719.1 2299624 2300100 D TIGRFAM: Pol-Pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: hypothetical protein; Pol-Pal system-associated acyl-CoA thioesterase 2299624..2300100 Parvibaculum lavamentivorans DS-1 5454234 YP_001413390.1 CDS Plav_2119 NC_009719.1 2300340 2301065 D TIGRFAM: Tol-Pal system TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: mag:amb3214 biopolymer transport protein; Tol-Pal system protein TolQ 2300340..2301065 Parvibaculum lavamentivorans DS-1 5455364 YP_001413391.1 CDS Plav_2120 NC_009719.1 2301070 2301528 D TIGRFAM: Biopolymer transport TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bov:BOV_1641 protein TolR; biopolymer transport TolR 2301070..2301528 Parvibaculum lavamentivorans DS-1 5455846 YP_001413392.1 CDS Plav_2121 NC_009719.1 2301538 2302371 D KEGG: bms:BR1698 TolA protein; hypothetical protein 2301538..2302371 Parvibaculum lavamentivorans DS-1 5453601 YP_001413393.1 CDS Plav_2122 NC_009719.1 2302396 2303736 D TIGRFAM: Tol-Pal system beta propeller repeat TolB; PFAM: TolB domain protein; WD40 domain protein beta Propeller; KEGG: atc:AGR_L_2244 TolB protein precursor; beta-propeller repeat-containing to-pal system protein TolB 2302396..2303736 Parvibaculum lavamentivorans DS-1 5455208 YP_001413394.1 CDS Plav_2123 NC_009719.1 2304081 2304581 D TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: rpa:RPA1123 omp16 protein; peptidoglycan-associated lipoprotein 2304081..2304581 Parvibaculum lavamentivorans DS-1 5456739 YP_001413395.1 CDS Plav_2124 NC_009719.1 2304741 2305646 D TIGRFAM: Tol-Pal system YbgF; KEGG: rru:Rru_A1096 hypothetical protein; Tol-Pal system protein YbgF 2304741..2305646 Parvibaculum lavamentivorans DS-1 5456758 YP_001413396.1 CDS Plav_2125 NC_009719.1 2305681 2307012 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: ExsB family protein; PP-loop domain protein; KEGG: mag:amb3207 predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine synthetase 2305681..2307012 Parvibaculum lavamentivorans DS-1 5455847 YP_001413397.1 CDS Plav_2126 NC_009719.1 2307190 2309115 D KEGG: rpa:RPA1126 metalloprotease (cell division protein) FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 2307190..2309115 Parvibaculum lavamentivorans DS-1 5456813 YP_001413398.1 CDS Plav_2127 NC_009719.1 2309200 2309523 R PFAM: ferredoxin; KEGG: mmr:Mmar10_0081 ferredoxin; ferredoxin complement(2309200..2309523) Parvibaculum lavamentivorans DS-1 5455841 YP_001413399.1 CDS Plav_2128 NC_009719.1 2309535 2310806 R PFAM: cytochrome P450; KEGG: pol:Bpro_5301 cytochrome P450; cytochrome P450 complement(2309535..2310806) Parvibaculum lavamentivorans DS-1 5455334 YP_001413400.1 CDS Plav_2129 NC_009719.1 2310986 2311618 D PFAM: regulatory protein TetR; KEGG: aha:AHA_3547 LitR, transcriptional regulator; TetR family transcriptional regulator 2310986..2311618 Parvibaculum lavamentivorans DS-1 5455736 YP_001413401.1 CDS Plav_2130 NC_009719.1 2311663 2312484 D TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; KEGG: sty:HCM1.222 dihydropteroate synthase; dihydropteroate synthase 2311663..2312484 Parvibaculum lavamentivorans DS-1 5455266 YP_001413402.1 CDS Plav_2131 NC_009719.1 2312650 2313996 D TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bja:bll7408 phosphoglucomutase/phosphomannomutase; phosphoglucosamine mutase 2312650..2313996 Parvibaculum lavamentivorans DS-1 5453618 YP_001413403.1 CDS Plav_2132 NC_009719.1 2314027 2314875 D TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: mmr:Mmar10_0552 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 2314027..2314875 Parvibaculum lavamentivorans DS-1 5453364 YP_001413404.1 CDS Plav_2133 NC_009719.1 2314864 2316294 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: mlo:mll0059 transcriptional regulator; GntR family transcriptional regulator complement(2314864..2316294) Parvibaculum lavamentivorans DS-1 5455349 YP_001413405.1 CDS Plav_2134 NC_009719.1 2316423 2317214 D TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: mag:amb3196 predicted epimerase, PhzC/PhzF homolog; PhzF family phenazine biosynthesis protein 2316423..2317214 Parvibaculum lavamentivorans DS-1 5454180 YP_001413406.1 CDS Plav_2135 NC_009719.1 2317242 2317835 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rle:RL3242 putative transmembrane transporter protein; lysine exporter protein LysE/YggA 2317242..2317835 Parvibaculum lavamentivorans DS-1 5455140 YP_001413407.1 CDS Plav_2136 NC_009719.1 2317832 2318725 R PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: mmr:Mmar10_0553 protein of unknown function DUF6, transmembrane; hypothetical protein complement(2317832..2318725) Parvibaculum lavamentivorans DS-1 5453613 YP_001413408.1 CDS Plav_2137 NC_009719.1 2318930 2320102 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 2318930..2320102 Parvibaculum lavamentivorans DS-1 5455528 YP_001413409.1 CDS Plav_2138 NC_009719.1 2320176 2321753 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2320176..2321753 Parvibaculum lavamentivorans DS-1 5456827 YP_001413410.1 CDS Plav_2139 NC_009719.1 2321883 2322371 D hypothetical protein 2321883..2322371 Parvibaculum lavamentivorans DS-1 5455918 YP_001413411.1 CDS Plav_2140 NC_009719.1 2322462 2322959 D PFAM: protein of unknown function DUF1457; hypothetical protein 2322462..2322959 Parvibaculum lavamentivorans DS-1 5456567 YP_001413412.1 CDS Plav_2141 NC_009719.1 2322961 2323629 R PFAM: pentapeptide repeat protein; KEGG: pentapeptide repeat family protein; pentapeptide repeat-containing protein complement(2322961..2323629) Parvibaculum lavamentivorans DS-1 5456757 YP_001413413.1 CDS Plav_2142 NC_009719.1 2323635 2324024 R PFAM: OsmC family protein; KEGG: bur:Bcep18194_B2297 OsmC-like protein; OsmC family protein complement(2323635..2324024) Parvibaculum lavamentivorans DS-1 5456550 YP_001413414.1 CDS Plav_2143 NC_009719.1 2324035 2324952 R PFAM: Pirin domain protein; KEGG: nha:Nham_0009 pirin-like; pirin domain-containing protein complement(2324035..2324952) Parvibaculum lavamentivorans DS-1 5454423 YP_001413415.1 CDS Plav_2144 NC_009719.1 2325200 2326492 D PFAM: adenylosuccinate synthetase; KEGG: mes:Meso_3159 adenylosuccinate synthetase; adenylosuccinate synthase 2325200..2326492 Parvibaculum lavamentivorans DS-1 5456238 YP_001413416.1 CDS Plav_2145 NC_009719.1 2326566 2326967 R KEGG: rde:RD1_1607 inner membrane protein; inner membrane protein complement(2326566..2326967) Parvibaculum lavamentivorans DS-1 5454227 YP_001413417.1 CDS Plav_2146 NC_009719.1 2327103 2327519 R KEGG: xcb:XC_1469 inner membrane protein; inner membrane protein complement(2327103..2327519) Parvibaculum lavamentivorans DS-1 5453615 YP_001413418.1 CDS Plav_2147 NC_009719.1 2327544 2328608 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: mes:Meso_3082 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(2327544..2328608) Parvibaculum lavamentivorans DS-1 5455623 YP_001413419.1 CDS Plav_2148 NC_009719.1 2328838 2329212 D KEGG: eli:ELI_11775 hypothetical protein; hypothetical protein 2328838..2329212 Parvibaculum lavamentivorans DS-1 5455962 YP_001413420.1 CDS Plav_2149 NC_009719.1 2329216 2331087 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2329216..2331087 Parvibaculum lavamentivorans DS-1 5454905 YP_001413421.1 CDS Plav_2150 NC_009719.1 2331416 2331790 D KEGG: ret:RHE_CH03261 putative bleomycin resistance protein; putative bleomycin resistance protein 2331416..2331790 Parvibaculum lavamentivorans DS-1 5454647 YP_001413422.1 CDS Plav_2151 NC_009719.1 2331790 2332320 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: bbt:BBta_6231 putative G/U mismatch-specific DNA glycosylase; uracil-DNA glycosylase superfamily protein 2331790..2332320 Parvibaculum lavamentivorans DS-1 5456761 YP_001413423.1 CDS Plav_2152 NC_009719.1 2332461 2334206 R PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: reu:Reut_B5252 hypothetical protein; amidohydrolase 3 complement(2332461..2334206) Parvibaculum lavamentivorans DS-1 5455012 YP_001413424.1 CDS Plav_2153 NC_009719.1 2334365 2335537 D hypothetical protein 2334365..2335537 Parvibaculum lavamentivorans DS-1 5456695 YP_001413425.1 CDS Plav_2154 NC_009719.1 2335613 2337169 D PFAM: phospholipase D/Transphosphatidylase; KEGG: bxe:Bxe_A2154 putative phospholipase D precursor; phospholipase D/transphosphatidylase 2335613..2337169 Parvibaculum lavamentivorans DS-1 5454847 YP_001413426.1 CDS Plav_2155 NC_009719.1 2337259 2337675 D KEGG: rha:RHA1_ro10139 possible ketosteroid isomerase-related protein; putative ketosteroid isomerase-like protein 2337259..2337675 Parvibaculum lavamentivorans DS-1 5453453 YP_001413427.1 CDS Plav_2156 NC_009719.1 2337761 2338417 D TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: bja:blr0834 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase 2337761..2338417 Parvibaculum lavamentivorans DS-1 5453395 YP_001413428.1 CDS Plav_2157 NC_009719.1 2338414 2338761 R hypothetical protein complement(2338414..2338761) Parvibaculum lavamentivorans DS-1 5456356 YP_001413429.1 CDS Plav_2158 NC_009719.1 2338837 2340000 R PFAM: protein of unknown function UPF0118; KEGG: mlo:mlr4869 hypothetical protein; hypothetical protein complement(2338837..2340000) Parvibaculum lavamentivorans DS-1 5455650 YP_001413430.1 CDS Plav_2159 NC_009719.1 2340055 2341077 R TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: rru:Rru_A1110 sigma 32 (RpoH); RNA polymerase sigma-32 subunit RpoH complement(2340055..2341077) Parvibaculum lavamentivorans DS-1 5456223 YP_001413431.1 CDS Plav_2160 NC_009719.1 2341247 2342596 R PFAM: HipA domain protein; KEGG: hypothetical protein; HipA domain-containing protein complement(2341247..2342596) Parvibaculum lavamentivorans DS-1 5454755 YP_001413432.1 CDS Plav_2161 NC_009719.1 2342593 2342973 R PFAM: helix-turn-helix domain protein; KEGG: transcriptional regulator, Cro/CI family; helix-turn-helix domain-containing protein complement(2342593..2342973) Parvibaculum lavamentivorans DS-1 5454817 YP_001413433.1 CDS Plav_2162 NC_009719.1 2343067 2343390 R KEGG: pna:Pnap_0085 putative transcriptional regulator; putative transcriptional regulator complement(2343067..2343390) Parvibaculum lavamentivorans DS-1 5455879 YP_001413434.1 CDS Plav_2163 NC_009719.1 2343572 2343871 R hypothetical protein complement(2343572..2343871) Parvibaculum lavamentivorans DS-1 5454591 YP_001413435.1 CDS Plav_2164 NC_009719.1 2343868 2345316 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: sme:SMc00647 putative ribosomal large subunit pseudouridine synthase protein; RluA family pseudouridine synthase complement(2343868..2345316) Parvibaculum lavamentivorans DS-1 5454579 YP_001413436.1 CDS Plav_2165 NC_009719.1 2346199 2346927 R TIGRFAM: methyltransferase FkbM family; KEGG: acr:Acry_1688 methyltransferase FkbM family; FkbM family methyltransferase complement(2346199..2346927) Parvibaculum lavamentivorans DS-1 5456790 YP_001413437.1 CDS Plav_2166 NC_009719.1 2346947 2347357 R PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); KEGG: gvi:glr3057 probable glutathione S-transferase; eicosanoid and glutathione metabolism membrane protein complement(2346947..2347357) Parvibaculum lavamentivorans DS-1 5453980 YP_001413438.1 CDS Plav_2167 NC_009719.1 2347438 2348181 R KEGG: rpa:RPA1622 hypothetical protein; hypothetical protein complement(2347438..2348181) Parvibaculum lavamentivorans DS-1 5454977 YP_001413439.1 CDS Plav_2168 NC_009719.1 2348308 2348964 R PFAM: conserved hypothetical protein; KEGG: azo:azo0042 conserved hypothetical secreted protein; hypothetical protein complement(2348308..2348964) Parvibaculum lavamentivorans DS-1 5455339 YP_001413440.1 CDS Plav_2169 NC_009719.1 2349138 2351240 D KEGG: mgm:Mmc1_0209 hypothetical protein; hypothetical protein 2349138..2351240 Parvibaculum lavamentivorans DS-1 5456386 YP_001413441.1 CDS Plav_2170 NC_009719.1 2351243 2351464 D KEGG: cch:Cag_1043 hypothetical protein; hypothetical protein 2351243..2351464 Parvibaculum lavamentivorans DS-1 5455449 YP_001413442.1 CDS Plav_2171 NC_009719.1 2351473 2351823 D PFAM: conserved hypothetical protein; KEGG: pat:Patl_2138 uncharacterised conserved protein UCP025560; hypothetical protein 2351473..2351823 Parvibaculum lavamentivorans DS-1 5455676 YP_001413443.1 CDS Plav_2172 NC_009719.1 2352147 2352956 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: hne:HNE_0169 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase complement(2352147..2352956) Parvibaculum lavamentivorans DS-1 5455712 YP_001413444.1 CDS Plav_2173 NC_009719.1 2353116 2353784 D KEGG: bbt:BBta_6560 hypothetical protein; hypothetical protein 2353116..2353784 Parvibaculum lavamentivorans DS-1 5453514 YP_001413445.1 CDS Plav_2174 NC_009719.1 2353864 2354571 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mlo:mll2816 two-component transcriptional regulator; two component transcriptional regulator complement(2353864..2354571) Parvibaculum lavamentivorans DS-1 5454580 YP_001413446.1 CDS fliI NC_009719.1 2354939 2356276 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2354939..2356276 Parvibaculum lavamentivorans DS-1 5453875 YP_001413447.1 CDS Plav_2176 NC_009719.1 2356276 2356686 D TIGRFAM: flagellar export protein FliJ; KEGG: rpc:RPC_4231 flagellar export FliJ; flagellar export protein FliJ 2356276..2356686 Parvibaculum lavamentivorans DS-1 5454648 YP_001413448.1 CDS Plav_2177 NC_009719.1 2356772 2357257 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 2356772..2357257 Parvibaculum lavamentivorans DS-1 5453802 YP_001413449.1 CDS Plav_2178 NC_009719.1 2357254 2357577 R KEGG: mmr:Mmar10_1731 hypothetical protein; hypothetical protein complement(2357254..2357577) Parvibaculum lavamentivorans DS-1 5455446 YP_001413450.1 CDS flhA NC_009719.1 2357906 2360041 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2357906..2360041) Parvibaculum lavamentivorans DS-1 5453867 YP_001413451.1 CDS Plav_2180 NC_009719.1 2360071 2361438 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: transcriptional regulator FlbD; two component sigma-54 specific Fis family transcriptional regulator complement(2360071..2361438) Parvibaculum lavamentivorans DS-1 5456682 YP_001413452.1 CDS Plav_2181 NC_009719.1 2361498 2361851 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rpb:RPB_1275 flagellar motor switch FliN; flagellar motor switch protein FliN complement(2361498..2361851) Parvibaculum lavamentivorans DS-1 5456693 YP_001413453.1 CDS fliH NC_009719.1 2361875 2362594 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(2361875..2362594) Parvibaculum lavamentivorans DS-1 5456409 YP_001413454.1 CDS fliG NC_009719.1 2362601 2363629 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(2362601..2363629) Parvibaculum lavamentivorans DS-1 5453962 YP_001413455.1 CDS Plav_2184 NC_009719.1 2363641 2365299 R TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: rpc:RPC_0941 flagellar M-ring protein FliF; flagellar M-ring protein FliF complement(2363641..2365299) Parvibaculum lavamentivorans DS-1 5455992 YP_001413456.1 CDS Plav_2185 NC_009719.1 2365594 2365869 R PFAM: protein of unknown function DUF1153; KEGG: rle:RL3754 hypothetical protein; hypothetical protein complement(2365594..2365869) Parvibaculum lavamentivorans DS-1 5455321 YP_001413457.1 CDS Plav_2186 NC_009719.1 2366002 2366682 R PFAM: flagellar hook capping protein; KEGG: bra:BRADO5897 putative flagellar basal-body rod modification protein FlgD; flagellar hook capping protein complement(2366002..2366682) Parvibaculum lavamentivorans DS-1 5455117 YP_001413458.1 CDS Plav_2187 NC_009719.1 2366701 2368188 R PFAM: flagellar hook-length control protein; KEGG: rpe:RPE_1040 flagellar hook-length control protein; flagellar hook-length control protein complement(2366701..2368188) Parvibaculum lavamentivorans DS-1 5453418 YP_001413459.1 CDS Plav_2188 NC_009719.1 2368317 2369705 D PFAM: ExsB family protein; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: mes:Meso_2217 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 2368317..2369705 Parvibaculum lavamentivorans DS-1 5455037 YP_001413460.1 CDS Plav_2189 NC_009719.1 2369802 2370491 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gbe:GbCGDNIH1_2260 phosphatidyl-N-methylethanolamine N-methyltransferase; phosphatidylethanolamine N-methyltransferase 2369802..2370491 Parvibaculum lavamentivorans DS-1 5455150 YP_001413461.1 CDS Plav_2190 NC_009719.1 2370838 2371455 D KEGG: shw:Sputw3181_3583 hypothetical protein; hypothetical protein 2370838..2371455 Parvibaculum lavamentivorans DS-1 5456870 YP_001413462.1 CDS Plav_2191 NC_009719.1 2371576 2371830 D hypothetical protein 2371576..2371830 Parvibaculum lavamentivorans DS-1 5454728 YP_001413463.1 CDS Plav_2192 NC_009719.1 2371827 2372507 R PFAM: pseudouridine synthase; KEGG: mmr:Mmar10_0793 pseudouridine synthase; pseudouridine synthase complement(2371827..2372507) Parvibaculum lavamentivorans DS-1 5456831 YP_001413464.1 CDS Plav_2193 NC_009719.1 2372514 2372735 R PFAM: SlyX family protein; KEGG: rpc:RPC_1351 SlyX; SlyX family protein complement(2372514..2372735) Parvibaculum lavamentivorans DS-1 5456598 YP_001413465.1 CDS Plav_2194 NC_009719.1 2372732 2373022 R PFAM: Excinuclease ABC C subunit domain protein; KEGG: dar:Daro_2472 excinuclease ABC, C subunit, N-terminal; excinuclease ABC subunit C complement(2372732..2373022) Parvibaculum lavamentivorans DS-1 5456194 YP_001413466.1 CDS Plav_2195 NC_009719.1 2373298 2373906 D PFAM: Exopolysaccharide synthesis ExoD; KEGG: mes:Meso_1827 exopolysaccharide synthesis, ExoD; exopolysaccharide synthesis ExoD 2373298..2373906 Parvibaculum lavamentivorans DS-1 5455768 YP_001413467.1 CDS Plav_2196 NC_009719.1 2373912 2374538 R PFAM: Glutathione S-transferase domain; KEGG: psb:Psyr_1175 glutathione S-transferase, N-terminal:glutathione S-transferase, C-terminal; glutathione S-transferase domain-containing protein complement(2373912..2374538) Parvibaculum lavamentivorans DS-1 5455352 YP_001413468.1 CDS Plav_2197 NC_009719.1 2374853 2375833 R KEGG: noc:Noc_2028 hypothetical protein; hypothetical protein complement(2374853..2375833) Parvibaculum lavamentivorans DS-1 5456407 YP_001413469.1 CDS Plav_2198 NC_009719.1 2375830 2377122 R PFAM: protein of unknown function DUF323; KEGG: nca:Noca_1640 protein of unknown function DUF323; hypothetical protein complement(2375830..2377122) Parvibaculum lavamentivorans DS-1 5454620 YP_001413470.1 CDS Plav_2199 NC_009719.1 2377310 2377513 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: nha:Nham_2034 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(2377310..2377513) Parvibaculum lavamentivorans DS-1 5453696 YP_001413471.1 CDS Plav_2200 NC_009719.1 2377751 2378200 R hypothetical protein complement(2377751..2378200) Parvibaculum lavamentivorans DS-1 5454458 YP_001413472.1 CDS Plav_2201 NC_009719.1 2378225 2378485 R hypothetical protein complement(2378225..2378485) Parvibaculum lavamentivorans DS-1 5453397 YP_001413473.1 CDS Plav_2202 NC_009719.1 2378567 2379538 R PFAM: high-affinity nickel-transporter; KEGG: sme:SMc02986 hypothetical protein; high-affinity nickel-transporter complement(2378567..2379538) Parvibaculum lavamentivorans DS-1 5453374 YP_001413474.1 CDS Plav_2203 NC_009719.1 2379565 2380239 R PFAM: protein of unknown function DUF1007; KEGG: rpb:RPB_4544 protein of unknown function DUF1007; hypothetical protein complement(2379565..2380239) Parvibaculum lavamentivorans DS-1 5453888 YP_001413475.1 CDS Plav_2204 NC_009719.1 2380255 2381394 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rpb:RPB_4674 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(2380255..2381394) Parvibaculum lavamentivorans DS-1 5454201 YP_001413476.1 CDS Plav_2205 NC_009719.1 2381479 2382672 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_3080 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein complement(2381479..2382672) Parvibaculum lavamentivorans DS-1 5455096 YP_001413477.1 CDS Plav_2206 NC_009719.1 2382880 2384490 R activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; acyl-CoA synthetase complement(2382880..2384490) Parvibaculum lavamentivorans DS-1 5455036 YP_001413478.1 CDS Plav_2207 NC_009719.1 2384623 2385507 R hypothetical protein complement(2384623..2385507) Parvibaculum lavamentivorans DS-1 5454406 YP_001413479.1 CDS Plav_2208 NC_009719.1 2385592 2386200 R KEGG: nar:Saro_2258 protein of unknown function UPF0191; hypothetical protein complement(2385592..2386200) Parvibaculum lavamentivorans DS-1 5455911 YP_001413480.1 CDS Plav_2209 NC_009719.1 2386349 2386966 D PFAM: regulatory protein TetR; KEGG: rxy:Rxyl_1811 transcriptional regulator, TetR family; TetR family transcriptional regulator 2386349..2386966 Parvibaculum lavamentivorans DS-1 5456454 YP_001413481.1 CDS Plav_2210 NC_009719.1 2386996 2388231 D KEGG: hypothetical protein; hypothetical protein 2386996..2388231 Parvibaculum lavamentivorans DS-1 5453837 YP_001413482.1 CDS Plav_2211 NC_009719.1 2388331 2389143 D PFAM: alpha/beta hydrolase fold; KEGG: plu:plu2437 hypothetical protein; alpha/beta hydrolase fold protein 2388331..2389143 Parvibaculum lavamentivorans DS-1 5454306 YP_001413483.1 CDS Plav_2212 NC_009719.1 2389146 2389658 R PFAM: response regulator receiver; KEGG: rpc:RPC_3108 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(2389146..2389658) Parvibaculum lavamentivorans DS-1 5454035 YP_001413484.1 CDS Plav_2213 NC_009719.1 2389655 2390200 R KEGG: nwi:Nwi_1333 Hpt protein; hypothetical protein complement(2389655..2390200) Parvibaculum lavamentivorans DS-1 5453483 YP_001413485.1 CDS Plav_2214 NC_009719.1 2390213 2390710 R PFAM: response regulator receiver; KEGG: nha:Nham_1662 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(2390213..2390710) Parvibaculum lavamentivorans DS-1 5454839 YP_001413486.1 CDS Plav_2215 NC_009719.1 2390859 2391725 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bra:BRADO4190 putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase; type 11 methyltransferase complement(2390859..2391725) Parvibaculum lavamentivorans DS-1 5455550 YP_001413487.1 CDS Plav_2216 NC_009719.1 2391916 2392704 R KEGG: rru:Rru_A3292 hypothetical protein; hypothetical protein complement(2391916..2392704) Parvibaculum lavamentivorans DS-1 5455160 YP_001413488.1 CDS Plav_2217 NC_009719.1 2392813 2393289 D PFAM: NUDIX hydrolase; KEGG: nha:Nham_3259 NUDIX hydrolase; NUDIX hydrolase 2392813..2393289 Parvibaculum lavamentivorans DS-1 5456492 YP_001413489.1 CDS Plav_2218 NC_009719.1 2393368 2393733 D hypothetical protein 2393368..2393733 Parvibaculum lavamentivorans DS-1 5455972 YP_001413490.1 CDS Plav_2219 NC_009719.1 2393769 2394041 D KEGG: bov:BOV_1568 hypothetical protein; hypothetical protein 2393769..2394041 Parvibaculum lavamentivorans DS-1 5453527 YP_001413491.1 CDS Plav_2220 NC_009719.1 2394042 2395043 R KEGG: sme:SMc02708 putative glutathione S-transferase; putative glutathione S-transferase complement(2394042..2395043) Parvibaculum lavamentivorans DS-1 5454651 YP_001413492.1 CDS Plav_2221 NC_009719.1 2395067 2395777 R PFAM: Pirin domain protein; KEGG: conserved hypothetical protein; pirin domain-containing protein complement(2395067..2395777) Parvibaculum lavamentivorans DS-1 5455834 YP_001413493.1 CDS Plav_2222 NC_009719.1 2395901 2396512 R TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: acr:Acry_2002 flavoprotein WrbA; flavoprotein WrbA complement(2395901..2396512) Parvibaculum lavamentivorans DS-1 5454895 YP_001413494.1 CDS Plav_2223 NC_009719.1 2396631 2397563 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rru:Rru_A2257 transcriptional regulator, LysR family; LysR family transcriptional regulator 2396631..2397563 Parvibaculum lavamentivorans DS-1 5454104 YP_001413495.1 CDS Plav_2224 NC_009719.1 2397576 2398880 R hypothetical protein complement(2397576..2398880) Parvibaculum lavamentivorans DS-1 5456767 YP_001413496.1 CDS Plav_2225 NC_009719.1 2398999 2399913 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_3099 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(2398999..2399913) Parvibaculum lavamentivorans DS-1 5453720 YP_001413497.1 CDS Plav_2226 NC_009719.1 2400279 2400806 D KEGG: rpc:RPC_1384 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2400279..2400806 Parvibaculum lavamentivorans DS-1 5456675 YP_001413498.1 CDS Plav_2227 NC_009719.1 2400839 2401822 R PFAM: periplasmic solute binding protein; KEGG: bbr:BB0185 putative periplasmic solute binding protein; periplasmic solute-binding protein complement(2400839..2401822) Parvibaculum lavamentivorans DS-1 5455387 YP_001413499.1 CDS Plav_2228 NC_009719.1 2401835 2402704 R PFAM: ABC-3 protein; KEGG: pst:PSPTO_2634 cation ABC transporter, permease protein; ABC-3 protein complement(2401835..2402704) Parvibaculum lavamentivorans DS-1 5457031 YP_001413500.1 CDS Plav_2229 NC_009719.1 2402701 2403438 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_2501 cation ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2402701..2403438) Parvibaculum lavamentivorans DS-1 5455198 YP_001413501.1 CDS Plav_2230 NC_009719.1 2403646 2403966 R PFAM: protein of unknown function UPF0060; KEGG: nwi:Nwi_1459 hypothetical protein; hypothetical protein complement(2403646..2403966) Parvibaculum lavamentivorans DS-1 5456597 YP_001413502.1 CDS Plav_2231 NC_009719.1 2403998 2406073 R KEGG: rpd:RPD_1292 hypothetical protein; hypothetical protein complement(2403998..2406073) Parvibaculum lavamentivorans DS-1 5456910 YP_001413503.1 CDS Plav_2232 NC_009719.1 2406085 2408904 R TIGRFAM: conserved hypothetical membrane protein; KEGG: rpc:RPC_0914 double-transmembrane region-like; hypothetical protein complement(2406085..2408904) Parvibaculum lavamentivorans DS-1 5454231 YP_001413504.1 CDS Plav_2233 NC_009719.1 2408908 2409870 R PFAM: protein of unknown function DUF58; KEGG: mag:amb3863 hypothetical protein; hypothetical protein complement(2408908..2409870) Parvibaculum lavamentivorans DS-1 5456264 YP_001413505.1 CDS Plav_2234 NC_009719.1 2409884 2410933 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: mag:amb4161 MoxR-like ATPase; ATPase complement(2409884..2410933) Parvibaculum lavamentivorans DS-1 5454354 YP_001413506.1 CDS Plav_2235 NC_009719.1 2411046 2411696 D PFAM: protein of unknown function DUF1285; KEGG: psb:Psyr_1659 protein of unknown function DUF1285; hypothetical protein 2411046..2411696 Parvibaculum lavamentivorans DS-1 5454210 YP_001413507.1 CDS Plav_2236 NC_009719.1 2411693 2412343 D PFAM: NUDIX hydrolase; KEGG: mmr:Mmar10_0727 NUDIX hydrolase; NUDIX hydrolase 2411693..2412343 Parvibaculum lavamentivorans DS-1 5453357 YP_001413508.1 CDS Plav_2237 NC_009719.1 2412432 2413685 D PFAM: Polynucleotide adenylyltransferase region; KEGG: tRNA nucleotidyltransferase (CCA-adding enzyme); polynucleotide adenylyltransferase 2412432..2413685 Parvibaculum lavamentivorans DS-1 5454237 YP_001413509.1 CDS Plav_2238 NC_009719.1 2413758 2414306 D hypothetical protein 2413758..2414306 Parvibaculum lavamentivorans DS-1 5454837 YP_001413510.1 CDS Plav_2239 NC_009719.1 2414306 2414851 D KEGG: yen:YE1502 putative lipoprotein; hypothetical protein 2414306..2414851 Parvibaculum lavamentivorans DS-1 5455363 YP_001413511.1 CDS Plav_2240 NC_009719.1 2414975 2415889 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(2414975..2415889) Parvibaculum lavamentivorans DS-1 5454791 YP_001413512.1 CDS Plav_2241 NC_009719.1 2415925 2416452 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: spoU rRNA methylase family protein; tRNA/rRNA methyltransferase SpoU complement(2415925..2416452) Parvibaculum lavamentivorans DS-1 5454582 YP_001413513.1 CDS Plav_2242 NC_009719.1 2416708 2417247 D TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: bbt:BBta_p0097 ubiquinol-cytochrome c reductase iron-sulfur subunit; ubiquinol-cytochrome c reductase, iron-sulfur subunit 2416708..2417247 Parvibaculum lavamentivorans DS-1 5456948 YP_001413514.1 CDS Plav_2243 NC_009719.1 2417262 2418539 D PFAM: Cytochrome b/b6 domain; KEGG: ubiquinol-cytochrome c reductase cytochrome b subunit; cytochrome b/b6 domain-containing protein 2417262..2418539 Parvibaculum lavamentivorans DS-1 5455683 YP_001413515.1 CDS Plav_2244 NC_009719.1 2418564 2419352 D PFAM: cytochrome c1; KEGG: bja:blr2486 cytochrome b/c1 precursor; cytochrome c1 2418564..2419352 Parvibaculum lavamentivorans DS-1 5456038 YP_001413516.1 CDS Plav_2245 NC_009719.1 2419462 2420355 D TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase family 2; KEGG: gbe:GbCGDNIH1_1721 5'-methylthioadenosine phosphorylase; methylthioadenosine phosphorylase 2419462..2420355 Parvibaculum lavamentivorans DS-1 5456919 YP_001413517.1 CDS Plav_2246 NC_009719.1 2420365 2420892 D TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: bbt:BBta_2310 adenine phosphoribosyltransferase; adenine phosphoribosyltransferase 2420365..2420892 Parvibaculum lavamentivorans DS-1 5456212 YP_001413518.1 CDS Plav_2247 NC_009719.1 2420915 2422009 D TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; KEGG: mag:amb4123 methylthioribose-1-phosphate isomerase; eIF-2B alpha/beta/delta-like protein 2420915..2422009 Parvibaculum lavamentivorans DS-1 5455843 YP_001413519.1 CDS Plav_2248 NC_009719.1 2422006 2422656 D PFAM: class II aldolase/adducin family protein; KEGG: rru:Rru_A0359 class II aldolase/adducin-like; class II aldolase/adducin family protein 2422006..2422656 Parvibaculum lavamentivorans DS-1 5454943 YP_001413520.1 CDS Plav_2249 NC_009719.1 2422833 2423321 R PFAM: glutathione peroxidase; KEGG: mag:amb3627 phospholipid hydroperoxide glutathione peroxidase; glutathione peroxidase complement(2422833..2423321) Parvibaculum lavamentivorans DS-1 5454565 YP_001413521.1 CDS Plav_2250 NC_009719.1 2423348 2423770 R PFAM: OsmC family protein; KEGG: bja:bll0735 organic hydroperoxide resistance protein; OsmC family protein complement(2423348..2423770) Parvibaculum lavamentivorans DS-1 5454984 YP_001413522.1 CDS Plav_2251 NC_009719.1 2423981 2424418 R PFAM: regulatory protein MarR; KEGG: rfr:Rfer_0573 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2423981..2424418) Parvibaculum lavamentivorans DS-1 5454473 YP_001413523.1 CDS Plav_2252 NC_009719.1 2424659 2425348 R PFAM: dienelactone hydrolase; KEGG: sal:Sala_2285 carboxymethylenebutenolidase; dienelactone hydrolase complement(2424659..2425348) Parvibaculum lavamentivorans DS-1 5453873 YP_001413524.1 CDS Plav_2253 NC_009719.1 2425395 2425877 R PFAM: MaoC domain protein dehydratase; KEGG: nwi:Nwi_2507 MaoC-like dehydratase; dehydratase complement(2425395..2425877) Parvibaculum lavamentivorans DS-1 5456354 YP_001413525.1 CDS Plav_2254 NC_009719.1 2425877 2426353 R PFAM: MaoC domain protein dehydratase; KEGG: mpt:Mpe_A3698 MaoC-related protein; dehydratase complement(2425877..2426353) Parvibaculum lavamentivorans DS-1 5456872 YP_001413526.1 CDS Plav_2255 NC_009719.1 2426586 2427695 R TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: bja:bll7439 GTP-binding protein; GTP-binding protein YchF complement(2426586..2427695) Parvibaculum lavamentivorans DS-1 5453349 YP_001413527.1 CDS Plav_2256 NC_009719.1 2427699 2428316 R PFAM: peptidyl-tRNA hydrolase; KEGG: bja:bll7440 peptidyl-tRNA hydrolase; aminoacyl-tRNA hydrolase complement(2427699..2428316) Parvibaculum lavamentivorans DS-1 5457004 YP_001413528.1 CDS Plav_2257 NC_009719.1 2428343 2428993 R TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: mes:Meso_2157 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; ribosomal 5S rRNA E-loop-binding protein Ctc/L25/TL5 complement(2428343..2428993) Parvibaculum lavamentivorans DS-1 5455286 YP_001413529.1 CDS Plav_2258 NC_009719.1 2429144 2430079 R TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; KEGG: mes:Meso_2155 ribose-phosphate pyrophosphokinase; ribose-phosphate pyrophosphokinase complement(2429144..2430079) Parvibaculum lavamentivorans DS-1 5456523 YP_001413530.1 CDS Plav_2259 NC_009719.1 2430226 2431248 R KEGG: mag:amb0592 hypothetical protein; hypothetical protein complement(2430226..2431248) Parvibaculum lavamentivorans DS-1 5456686 YP_001413531.1 CDS Plav_2260 NC_009719.1 2431331 2432098 R PFAM: protein of unknown function DUF152; KEGG: mes:Meso_2152 protein of unknown function DUF152; hypothetical protein complement(2431331..2432098) Parvibaculum lavamentivorans DS-1 5455569 YP_001413532.1 CDS Plav_2261 NC_009719.1 2432110 2433180 R PFAM: protein of unknown function DUF185; KEGG: mag:amb0594 hypothetical protein; hypothetical protein complement(2432110..2433180) Parvibaculum lavamentivorans DS-1 5455484 YP_001413533.1 CDS Plav_2262 NC_009719.1 2433177 2434007 R PFAM: prolipoprotein diacylglyceryl transferase; KEGG: mes:Meso_2150 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase complement(2433177..2434007) Parvibaculum lavamentivorans DS-1 5454043 YP_001413534.1 CDS Plav_2263 NC_009719.1 2434160 2434489 D PFAM: protein of unknown function DUF526; KEGG: rpb:RPB_4162 protein of unknown function DUF526; hypothetical protein 2434160..2434489 Parvibaculum lavamentivorans DS-1 5455162 YP_001413535.1 CDS Plav_2264 NC_009719.1 2434668 2435171 D PFAM: Protein of unknown function DUF1790; KEGG: rpc:RPC_1407 hypothetical protein; hypothetical protein 2434668..2435171 Parvibaculum lavamentivorans DS-1 5455922 YP_001413536.1 CDS Plav_2265 NC_009719.1 2435162 2436043 D TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rsh:Rsph17029_3009 pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 2435162..2436043 Parvibaculum lavamentivorans DS-1 5456177 YP_001413537.1 CDS Plav_2266 NC_009719.1 2436102 2436716 D PFAM: regulatory protein TetR; KEGG: rru:Rru_A3282 hypothetical protein; regulatory protein TetR 2436102..2436716 Parvibaculum lavamentivorans DS-1 5456281 YP_001413538.1 CDS Plav_2267 NC_009719.1 2436720 2437091 R KEGG: mxa:MXAN_2409 hypothetical protein; hypothetical protein complement(2436720..2437091) Parvibaculum lavamentivorans DS-1 5453482 YP_001413539.1 CDS Plav_2268 NC_009719.1 2437177 2438583 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpc:RPC_1385 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2437177..2438583) Parvibaculum lavamentivorans DS-1 5454368 YP_001413540.1 CDS Plav_2269 NC_009719.1 2438594 2439325 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpa:RPA4368 two-component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2438594..2439325) Parvibaculum lavamentivorans DS-1 5455624 YP_001413541.1 CDS Plav_2270 NC_009719.1 2439355 2439873 R PFAM: regulatory protein MarR; KEGG: mag:amb0550 transcriptional regulator; MarR family transcriptional regulator complement(2439355..2439873) Parvibaculum lavamentivorans DS-1 5455427 YP_001413542.1 CDS Plav_2271 NC_009719.1 2440104 2441003 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2440104..2441003 Parvibaculum lavamentivorans DS-1 5455493 YP_001413543.1 CDS Plav_2272 NC_009719.1 2441059 2441484 R PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_1883 phenylacetic acid degradation-related protein; thioesterase superfamily protein complement(2441059..2441484) Parvibaculum lavamentivorans DS-1 5456871 YP_001413544.1 CDS Plav_2273 NC_009719.1 2441621 2442061 R PFAM: molybdopterin biosynthesis MoaE protein; KEGG: mlo:mlr7915 molybdopterin converting factor, subunit 2; molybdopterin biosynthesis protein MoaE complement(2441621..2442061) Parvibaculum lavamentivorans DS-1 5456129 YP_001413545.1 CDS Plav_2274 NC_009719.1 2442066 2442317 R TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: bbt:BBta_1725 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 complement(2442066..2442317) Parvibaculum lavamentivorans DS-1 5454575 YP_001413546.1 CDS Plav_2275 NC_009719.1 2442314 2442937 R TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sme:SMc00601 probable CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase transmembrane protein; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2442314..2442937) Parvibaculum lavamentivorans DS-1 5454422 YP_001413547.1 CDS Plav_2276 NC_009719.1 2443012 2444946 R TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC C subunit domain protein; helix-hairpin-helix motif; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: mes:Meso_1975 excinuclease ABC, C subunit; excinuclease ABC subunit C complement(2443012..2444946) Parvibaculum lavamentivorans DS-1 5456345 YP_001413548.1 CDS Plav_2277 NC_009719.1 2445321 2445728 R TIGRFAM: dihydroneopterin aldolase; KEGG: rru:Rru_A2219 dihydroneopterin aldolase family; dihydroneopterin aldolase complement(2445321..2445728) Parvibaculum lavamentivorans DS-1 5455252 YP_001413549.1 CDS Plav_2278 NC_009719.1 2445739 2446509 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rru:Rru_A2218 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2445739..2446509) Parvibaculum lavamentivorans DS-1 5454884 YP_001413550.1 CDS Plav_2279 NC_009719.1 2446521 2447573 R TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: jan:Jann_3921 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na(+)/Ca(+) antiporter complement(2446521..2447573) Parvibaculum lavamentivorans DS-1 5455783 YP_001413551.1 CDS Plav_2280 NC_009719.1 2447811 2449583 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: sde:Sde_1457 K+ efflux antiporter, putative (KEA1); sodium/hydrogen exchanger 2447811..2449583 Parvibaculum lavamentivorans DS-1 5454464 YP_001413552.1 CDS Plav_2281 NC_009719.1 2449586 2449939 R PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: mlo:mlr8466 hypothetical protein; hypothetical protein complement(2449586..2449939) Parvibaculum lavamentivorans DS-1 5455891 YP_001413553.1 CDS Plav_2282 NC_009719.1 2450070 2451290 D KEGG: nha:Nham_2462 hypothetical protein; hypothetical protein 2450070..2451290 Parvibaculum lavamentivorans DS-1 5454967 YP_001413554.1 CDS Plav_2283 NC_009719.1 2451294 2451848 R KEGG: dge:Dgeo_1743 short chain dehydrogenase; short chain dehydrogenase complement(2451294..2451848) Parvibaculum lavamentivorans DS-1 5453739 YP_001413555.1 CDS Plav_2284 NC_009719.1 2451866 2452204 R KEGG: aha:AHA_3401 hypothetical protein; hypothetical protein complement(2451866..2452204) Parvibaculum lavamentivorans DS-1 5453481 YP_001413556.1 CDS Plav_2285 NC_009719.1 2452275 2452775 R KEGG: bja:bll7605 hypothetical protein; hypothetical protein complement(2452275..2452775) Parvibaculum lavamentivorans DS-1 5455157 YP_001413557.1 CDS Plav_2286 NC_009719.1 2452907 2453314 D hypothetical protein 2452907..2453314 Parvibaculum lavamentivorans DS-1 5456152 YP_001413558.1 CDS Plav_2287 NC_009719.1 2453476 2454879 D KEGG: plt:Plut_1873 hypothetical protein; hypothetical protein 2453476..2454879 Parvibaculum lavamentivorans DS-1 5454539 YP_001413559.1 CDS Plav_2288 NC_009719.1 2455577 2457892 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2455577..2457892) Parvibaculum lavamentivorans DS-1 5454425 YP_001413560.1 CDS Plav_2289 NC_009719.1 2457975 2458229 R hypothetical protein complement(2457975..2458229) Parvibaculum lavamentivorans DS-1 5456268 YP_001413561.1 CDS Plav_2290 NC_009719.1 2458355 2458831 D hypothetical protein 2458355..2458831 Parvibaculum lavamentivorans DS-1 5455836 YP_001413562.1 CDS Plav_2291 NC_009719.1 2458828 2459619 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: hma:rrnAC0720 hypothetical protein; hypothetical protein 2458828..2459619 Parvibaculum lavamentivorans DS-1 5455419 YP_001413563.1 CDS Plav_2292 NC_009719.1 2459622 2460248 R PFAM: regulatory protein TetR; KEGG: pfl:PFL_4531 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2459622..2460248) Parvibaculum lavamentivorans DS-1 5454090 YP_001413564.1 CDS Plav_2293 NC_009719.1 2460274 2460888 R PFAM: regulatory protein TetR; KEGG: bvi:Bcep1808_5478 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2460274..2460888) Parvibaculum lavamentivorans DS-1 5454679 YP_001413565.1 CDS Plav_2294 NC_009719.1 2461067 2461666 R TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: sde:Sde_0123 sortase (surface protein transpeptidase)-like; sortase family protein complement(2461067..2461666) Parvibaculum lavamentivorans DS-1 5453672 YP_001413566.1 CDS Plav_2295 NC_009719.1 2461687 2463954 R PFAM: Vault protein inter-alpha-trypsin domain protein; SMART: von Willebrand factor type A; Vault protein inter-alpha-trypsin, metazoa; KEGG: ret:RHE_CH03000 hypothetical protein; vault protein inter-alpha-trypsin subunit complement(2461687..2463954) Parvibaculum lavamentivorans DS-1 5456225 YP_001413567.1 CDS Plav_2296 NC_009719.1 2464095 2464709 R PFAM: Glutathione S-transferase domain; KEGG: pfl:PFL_4361 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(2464095..2464709) Parvibaculum lavamentivorans DS-1 5454914 YP_001413568.1 CDS Plav_2297 NC_009719.1 2464720 2466225 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rxy:Rxyl_0136 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2464720..2466225) Parvibaculum lavamentivorans DS-1 5456484 YP_001413569.1 CDS Plav_2298 NC_009719.1 2466329 2466508 D KEGG: eli:ELI_10250 hypothetical protein; hypothetical protein 2466329..2466508 Parvibaculum lavamentivorans DS-1 5454581 YP_001413570.1 CDS Plav_2299 NC_009719.1 2466521 2467153 D KEGG: rso:RSc3120 hypothetical protein; hypothetical protein 2466521..2467153 Parvibaculum lavamentivorans DS-1 5454358 YP_001413571.1 CDS Plav_2300 NC_009719.1 2467250 2468452 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2467250..2468452 Parvibaculum lavamentivorans DS-1 5457037 YP_001413572.1 CDS Plav_2301 NC_009719.1 2468506 2469318 R PFAM: peptidase M48 Ste24p; KEGG: mmr:Mmar10_1850 peptidase M48, Ste24p; peptidase M48 Ste24p complement(2468506..2469318) Parvibaculum lavamentivorans DS-1 5456917 YP_001413573.1 CDS Plav_2302 NC_009719.1 2469483 2469950 D PFAM: Ferritin Dps family protein; KEGG: mfa:Mfla_1120 ferritin and Dps; ferritin Dps family protein 2469483..2469950 Parvibaculum lavamentivorans DS-1 5453471 YP_001413574.1 CDS Plav_2303 NC_009719.1 2469991 2470683 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mlo:mll5344 hypothetical protein; HAD family hydrolase 2469991..2470683 Parvibaculum lavamentivorans DS-1 5455609 YP_001413575.1 CDS Plav_2304 NC_009719.1 2470680 2471606 R PFAM: sulfotransferase; KEGG: noc:Noc_0082 sulfotransferase; sulfotransferase complement(2470680..2471606) Parvibaculum lavamentivorans DS-1 5454687 YP_001413576.1 CDS Plav_2305 NC_009719.1 2471749 2472753 R TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mmr:Mmar10_2145 thioredoxin reductase; thioredoxin reductase complement(2471749..2472753) Parvibaculum lavamentivorans DS-1 5453387 YP_001413577.1 CDS Plav_2306 NC_009719.1 2472854 2473459 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tcx:Tcr_1387 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase complement(2472854..2473459) Parvibaculum lavamentivorans DS-1 5453344 YP_001413578.1 CDS Plav_2307 NC_009719.1 2473803 2475599 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: azo:azo2598 conserved hypothetical secreted protein; hypothetical protein 2473803..2475599 Parvibaculum lavamentivorans DS-1 5453426 YP_001413579.1 CDS Plav_2308 NC_009719.1 2475646 2477625 R KEGG: gbe:GbCGDNIH1_0635 hypothetical cytosolic protein; hypothetical protein complement(2475646..2477625) Parvibaculum lavamentivorans DS-1 5454673 YP_001413580.1 CDS Plav_2309 NC_009719.1 2477661 2478440 R KEGG: acr:Acry_1264 hypothetical protein; hypothetical protein complement(2477661..2478440) Parvibaculum lavamentivorans DS-1 5455785 YP_001413581.1 CDS Plav_2310 NC_009719.1 2478444 2479451 R PFAM: protein of unknown function DUF1022; KEGG: rru:Rru_A1980 protein of unknown function DUF1022; hypothetical protein complement(2478444..2479451) Parvibaculum lavamentivorans DS-1 5454320 YP_001413582.1 CDS Plav_2311 NC_009719.1 2479570 2480055 D PFAM: regulatory protein AsnC/Lrp family; KEGG: sit:TM1040_0615 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2479570..2480055 Parvibaculum lavamentivorans DS-1 5455930 YP_001413583.1 CDS Plav_2312 NC_009719.1 2480062 2480520 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: mes:Meso_2118 transcription elongation factor GreA; transcription elongation factor GreA complement(2480062..2480520) Parvibaculum lavamentivorans DS-1 5456049 YP_001413584.1 CDS Plav_2313 NC_009719.1 2480730 2483969 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: mag:amb0702 carbamoylphosphate synthase large subunit; carbamoyl-phosphate synthase large subunit complement(2480730..2483969) Parvibaculum lavamentivorans DS-1 5453824 YP_001413585.1 CDS Plav_2314 NC_009719.1 2484033 2485241 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: rpa:RPA1276 carbamoyl-phosphate synthase small subunit; carbamoyl-phosphate synthase small subunit complement(2484033..2485241) Parvibaculum lavamentivorans DS-1 5454561 YP_001413586.1 CDS Plav_2315 NC_009719.1 2485598 2486062 D PFAM: GatB/Yqey domain protein; KEGG: rru:Rru_A2884 GatB/YqeY; GatB/Yqey domain-containing protein 2485598..2486062 Parvibaculum lavamentivorans DS-1 5453674 YP_001413587.1 CDS Plav_2316 NC_009719.1 2486138 2488039 D TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; KEGG: mes:Meso_1464 DNA primase; DNA primase 2486138..2488039 Parvibaculum lavamentivorans DS-1 5455510 YP_001413588.1 CDS Plav_2317 NC_009719.1 2488356 2490326 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 2488356..2490326 Parvibaculum lavamentivorans DS-1 5456851 YP_001413589.1 CDS Plav_2318 NC_009719.1 2490453 2491502 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1612 UbiE/COQ5 methyltransferase; type 11 methyltransferase complement(2490453..2491502) Parvibaculum lavamentivorans DS-1 5456081 YP_001413590.1 CDS Plav_2319 NC_009719.1 2491581 2491874 R hypothetical protein complement(2491581..2491874) Parvibaculum lavamentivorans DS-1 5454432 YP_001413591.1 CDS Plav_2320 NC_009719.1 2492031 2493149 R PFAM: ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_B2746 ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein complement(2492031..2493149) Parvibaculum lavamentivorans DS-1 5456087 YP_001413592.1 CDS Plav_2321 NC_009719.1 2493315 2494070 R PFAM: protein of unknown function DUF541; KEGG: mes:Meso_2073 protein of unknown function DUF541; hypothetical protein complement(2493315..2494070) Parvibaculum lavamentivorans DS-1 5454071 YP_001413593.1 CDS Plav_2322 NC_009719.1 2494704 2495258 D TetR family transcriptional regulator 2494704..2495258 Parvibaculum lavamentivorans DS-1 5455867 YP_001413594.1 CDS Plav_2323 NC_009719.1 2495849 2496379 R KEGG: vei:Veis_2327 hypothetical protein; hypothetical protein complement(2495849..2496379) Parvibaculum lavamentivorans DS-1 5456460 YP_001413595.1 CDS Plav_2324 NC_009719.1 2496425 2498251 R KEGG: rpe:RPE_2456 hypothetical protein; hypothetical protein complement(2496425..2498251) Parvibaculum lavamentivorans DS-1 5456951 YP_001413596.1 CDS Plav_2325 NC_009719.1 2498450 2503798 R TIGRFAM: outer membrane autotransporter barrel domain; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: bam:Bamb_4364 outer membrane autotransporter barrel domain; outer membrane autotransporter complement(2498450..2503798) Parvibaculum lavamentivorans DS-1 5455265 YP_001413597.1 CDS Plav_2326 NC_009719.1 2503946 2504578 D PFAM: regulatory protein LuxR; response regulator receiver; LexA DNA-binding domain protein; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: pde:Pden_4349 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2503946..2504578 Parvibaculum lavamentivorans DS-1 5455274 YP_001413598.1 CDS Plav_2327 NC_009719.1 2504583 2506358 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pmy:Pmen_4041 integral membrane sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase complement(2504583..2506358) Parvibaculum lavamentivorans DS-1 5454715 YP_001413599.1 CDS Plav_2328 NC_009719.1 2506554 2508593 R hypothetical protein complement(2506554..2508593) Parvibaculum lavamentivorans DS-1 5453566 YP_001413600.1 CDS Plav_2329 NC_009719.1 2508965 2510104 R hypothetical protein complement(2508965..2510104) Parvibaculum lavamentivorans DS-1 5456218 YP_001413601.1 CDS Plav_2330 NC_009719.1 2510371 2510901 D hypothetical protein 2510371..2510901 Parvibaculum lavamentivorans DS-1 5456883 YP_001413602.1 CDS Plav_2331 NC_009719.1 2510908 2511444 R hypothetical protein complement(2510908..2511444) Parvibaculum lavamentivorans DS-1 5454724 YP_001413603.1 CDS Plav_2332 NC_009719.1 2511437 2512054 R hypothetical protein complement(2511437..2512054) Parvibaculum lavamentivorans DS-1 5454427 YP_001413604.1 CDS Plav_2335 NC_009719.1 2513986 2514768 R KEGG: nwi:Nwi_2083 hypothetical protein; hypothetical protein complement(2513986..2514768) Parvibaculum lavamentivorans DS-1 5453407 YP_001413605.1 CDS Plav_2336 NC_009719.1 2514944 2515465 D KEGG: bra:BRADO1453 hypothetical protein; hypothetical protein 2514944..2515465 Parvibaculum lavamentivorans DS-1 5455447 YP_001413606.1 CDS Plav_2337 NC_009719.1 2515462 2516151 D KEGG: fjo:Fjoh_3632 hypothetical protein; hypothetical protein 2515462..2516151 Parvibaculum lavamentivorans DS-1 5455978 YP_001413607.1 CDS Plav_2338 NC_009719.1 2516208 2517107 D KEGG: nha:Nham_4460 hypothetical protein; hypothetical protein 2516208..2517107 Parvibaculum lavamentivorans DS-1 5453485 YP_001413608.1 CDS Plav_2339 NC_009719.1 2517277 2517909 D PFAM: integrase family protein; KEGG: rsh:Rsph17029_2267 phage integrase family protein; integrase family protein 2517277..2517909 Parvibaculum lavamentivorans DS-1 5454623 YP_001413609.1 CDS Plav_2340 NC_009719.1 2518208 2519479 D PFAM: metallophosphoesterase; KEGG: bam:Bamb_5979 metallophosphoesterase; metallophosphoesterase 2518208..2519479 Parvibaculum lavamentivorans DS-1 5455329 YP_001413610.1 CDS Plav_2341 NC_009719.1 2519482 2523042 D KEGG: bcn:Bcen_5856 hypothetical protein; hypothetical protein 2519482..2523042 Parvibaculum lavamentivorans DS-1 5456656 YP_001413611.1 CDS Plav_2342 NC_009719.1 2523100 2524182 R KEGG: pin:Ping_2566 hypothetical protein; hypothetical protein complement(2523100..2524182) Parvibaculum lavamentivorans DS-1 5456468 YP_001413612.1 CDS Plav_2343 NC_009719.1 2524463 2525179 R PFAM: protein of unknown function DUF45; KEGG: mca:MCA1894 hypothetical protein; hypothetical protein complement(2524463..2525179) Parvibaculum lavamentivorans DS-1 5456788 YP_001413613.1 CDS Plav_2344 NC_009719.1 2525176 2528313 R TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: mca:MCA1893 type I restriction-modification system, R subunit; HsdR family type I site-specific deoxyribonuclease complement(2525176..2528313) Parvibaculum lavamentivorans DS-1 5456649 YP_001413614.1 CDS Plav_2345 NC_009719.1 2528388 2529236 R KEGG: nwi:Nwi_3122 hypothetical protein; hypothetical protein complement(2528388..2529236) Parvibaculum lavamentivorans DS-1 5455508 YP_001413615.1 CDS Plav_2346 NC_009719.1 2529248 2530426 R PFAM: restriction modification system DNA specificity domain; KEGG: lpc:LPC_2789 hypothetical protein; restriction modification system DNA specificity subunit complement(2529248..2530426) Parvibaculum lavamentivorans DS-1 5453411 YP_001413616.1 CDS Plav_2347 NC_009719.1 2530419 2531435 R KEGG: nwi:Nwi_3119 putative DNA-binding protein; putative DNA-binding protein complement(2530419..2531435) Parvibaculum lavamentivorans DS-1 5454225 YP_001413617.1 CDS Plav_2348 NC_009719.1 2531428 2532945 R TIGRFAM: type I restriction-modification system, M subunit; PFAM: putative RNA methylase; N-6 DNA methylase; Eco57I restriction endonuclease; KEGG: mca:MCA1888 type I restriction-modification system, M subunit; type I restriction-modification system, M subunit complement(2531428..2532945) Parvibaculum lavamentivorans DS-1 5456139 YP_001413618.1 CDS Plav_2349 NC_009719.1 2532942 2533547 R KEGG: mca:MCA1886 hypothetical protein; hypothetical protein complement(2532942..2533547) Parvibaculum lavamentivorans DS-1 5453903 YP_001413619.1 CDS Plav_2350 NC_009719.1 2533663 2535450 R KEGG: bja:blr2300 hypothetical protein; hypothetical protein complement(2533663..2535450) Parvibaculum lavamentivorans DS-1 5455420 YP_001413620.1 CDS Plav_2351 NC_009719.1 2535455 2536387 R KEGG: bja:blr2299 hypothetical protein; hypothetical protein complement(2535455..2536387) Parvibaculum lavamentivorans DS-1 5453849 YP_001413621.1 CDS Plav_2352 NC_009719.1 2536380 2538545 R PFAM: Integrase catalytic region; KEGG: nha:Nham_1364 integrase, catalytic region; integrase catalytic subunit complement(2536380..2538545) Parvibaculum lavamentivorans DS-1 5455656 YP_001413622.1 CDS Plav_2353 NC_009719.1 2538565 2539308 R KEGG: nha:Nham_1363 hypothetical protein; hypothetical protein complement(2538565..2539308) Parvibaculum lavamentivorans DS-1 5454904 YP_001413623.1 CDS Plav_2354 NC_009719.1 2539878 2540798 R PFAM: beta-lactamase domain protein; KEGG: pfo:Pfl_2454 beta-lactamase-like; beta-lactamase domain-containing protein complement(2539878..2540798) Parvibaculum lavamentivorans DS-1 5455064 YP_001413624.1 CDS Plav_2355 NC_009719.1 2541164 2543872 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: ret:RHE_PF00222 probable two-component sensor histidine kinase protein; PAS/PAC sensor signal transduction histidine kinase 2541164..2543872 Parvibaculum lavamentivorans DS-1 5455766 YP_001413625.1 CDS Plav_2356 NC_009719.1 2543869 2544516 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: ret:RHE_PF00223 two-component response regulator protein (NodW mutant supressor protein); response regulator receiver protein 2543869..2544516 Parvibaculum lavamentivorans DS-1 5455983 YP_001413626.1 CDS Plav_2357 NC_009719.1 2544513 2544902 D PFAM: response regulator receiver; KEGG: rle:pRL120791 putative two-component response regulator transcriptional regulatory protein; response regulator receiver protein 2544513..2544902 Parvibaculum lavamentivorans DS-1 5455516 YP_001413627.1 CDS Plav_2358 NC_009719.1 2544892 2545593 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ret:RHE_PF00225 probable two-component response regulator protein; response regulator receiver protein 2544892..2545593 Parvibaculum lavamentivorans DS-1 5453925 YP_001413628.1 CDS Plav_2359 NC_009719.1 2545788 2546999 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:bll2792 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2545788..2546999) Parvibaculum lavamentivorans DS-1 5454898 YP_001413629.1 CDS Plav_2360 NC_009719.1 2547483 2548517 D PFAM: secretion protein HlyD family protein; KEGG: sme:SMb20699 putative protein secretion protein, HlyD family, similar to E. coli EmrK; secretion protein HlyD family protein 2547483..2548517 Parvibaculum lavamentivorans DS-1 5454834 YP_001413630.1 CDS Plav_2361 NC_009719.1 2548520 2550106 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMb20698 putative transport protein, similar to E. coli multidrug resistance protein EmrB; EmrB/QacA family drug resistance transporter 2548520..2550106 Parvibaculum lavamentivorans DS-1 5455825 YP_001413631.1 CDS Plav_2362 NC_009719.1 2550255 2551004 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMb20871 putative dehydrogenasereductase, short-chain dehydrogenase/reductase protein; short-chain dehydrogenase/reductase SDR 2550255..2551004 Parvibaculum lavamentivorans DS-1 5455350 YP_001413632.1 CDS Plav_2363 NC_009719.1 2551078 2552064 D PFAM: alpha/beta hydrolase fold; KEGG: rle:RL2967 putative non-heme chloroperoxidase; alpha/beta hydrolase fold protein 2551078..2552064 Parvibaculum lavamentivorans DS-1 5456316 YP_001413633.1 CDS Plav_2364 NC_009719.1 2552226 2553227 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II complement(2552226..2553227) Parvibaculum lavamentivorans DS-1 5453425 YP_001413634.1 CDS Plav_2367 NC_009719.1 2556260 2556604 D KEGG: rpe:RPE_2440 hypothetical protein; hypothetical protein 2556260..2556604 Parvibaculum lavamentivorans DS-1 5454925 YP_001413635.1 CDS Plav_2368 NC_009719.1 2556784 2557455 R PFAM: RES domain protein; KEGG: rle:pRL110092 hypothetical protein; RES domain-containing protein complement(2556784..2557455) Parvibaculum lavamentivorans DS-1 5454844 YP_001413636.1 CDS Plav_2369 NC_009719.1 2557452 2557976 R KEGG: ret:RHE_PE00061 hypothetical protein; hypothetical protein complement(2557452..2557976) Parvibaculum lavamentivorans DS-1 5453881 YP_001413637.1 CDS Plav_2370 NC_009719.1 2558107 2558490 D KEGG: rsq:Rsph17025_4156 hypothetical protein; hypothetical protein 2558107..2558490 Parvibaculum lavamentivorans DS-1 5456902 YP_001413638.1 CDS Plav_2371 NC_009719.1 2558499 2559074 D KEGG: mjl:Mjls_2690 hypothetical protein; hypothetical protein 2558499..2559074 Parvibaculum lavamentivorans DS-1 5456434 YP_001413639.1 CDS Plav_2372 NC_009719.1 2559465 2560400 R PFAM: Pirin domain protein; KEGG: pde:Pden_3510 pirin domain protein domain protein; pirin domain-containing protein complement(2559465..2560400) Parvibaculum lavamentivorans DS-1 5453975 YP_001413640.1 CDS Plav_2373 NC_009719.1 2560586 2561479 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_L_471GM hypothetical protein; LysR family transcriptional regulator complement(2560586..2561479) Parvibaculum lavamentivorans DS-1 5456424 YP_001413641.1 CDS Plav_2374 NC_009719.1 2561635 2562288 D PFAM: isochorismatase hydrolase; KEGG: rle:RL0306 putative isochorismatase family protein; isochorismatase hydrolase 2561635..2562288 Parvibaculum lavamentivorans DS-1 5456445 YP_001413642.1 CDS Plav_2375 NC_009719.1 2562583 2564238 D catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 2562583..2564238 Parvibaculum lavamentivorans DS-1 5456382 YP_001413643.1 CDS Plav_2376 NC_009719.1 2564261 2565643 D PFAM: aldehyde dehydrogenase; KEGG: hne:HNE_2500 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 2564261..2565643 Parvibaculum lavamentivorans DS-1 5453363 YP_001413644.1 CDS Plav_2377 NC_009719.1 2565732 2567501 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: mpt:Mpe_A0112 Kef-type K+ transport; potassium efflux system protein 2565732..2567501 Parvibaculum lavamentivorans DS-1 5453362 YP_001413645.1 CDS Plav_2378 NC_009719.1 2567526 2567981 R PFAM: Endoribonuclease L-PSP; KEGG: reh:H16_A1805 putative translation initiation inhibitor,yjgFfamily; endoribonuclease L-PSP complement(2567526..2567981) Parvibaculum lavamentivorans DS-1 5454680 YP_001413646.1 CDS Plav_2379 NC_009719.1 2568110 2569726 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:bll5692 two-component hybrid sensor and regulator; integral membrane sensor signal transduction histidine kinase 2568110..2569726 Parvibaculum lavamentivorans DS-1 5456926 YP_001413647.1 CDS Plav_2380 NC_009719.1 2569723 2570349 D PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bja:bll1714 two component regulator; response regulator receiver protein 2569723..2570349 Parvibaculum lavamentivorans DS-1 5456638 YP_001413648.1 CDS Plav_2381 NC_009719.1 2570470 2570844 D PFAM: response regulator receiver; KEGG: aba:Acid345_3728 response regulator receiver protein; response regulator receiver protein 2570470..2570844 Parvibaculum lavamentivorans DS-1 5454163 YP_001413649.1 CDS Plav_2382 NC_009719.1 2570914 2571618 D PFAM: isochorismatase hydrolase; KEGG: ppu:PP_3976 hydrolase, isochorismatase family; isochorismatase hydrolase 2570914..2571618 Parvibaculum lavamentivorans DS-1 5454442 YP_001413650.1 CDS Plav_2383 NC_009719.1 2571623 2573590 D PFAM: Amidohydrolase 3; KEGG: acb:A1S_1451 hypothetical protein; amidohydrolase 3 2571623..2573590 Parvibaculum lavamentivorans DS-1 5455840 YP_001413651.1 CDS Plav_2384 NC_009719.1 2573606 2575255 D PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: reu:Reut_A2884 protein of unknown function DUF894, DitE:major facilitator superfamily MFS_1; hypothetical protein 2573606..2575255 Parvibaculum lavamentivorans DS-1 5456480 YP_001413652.1 CDS Plav_2385 NC_009719.1 2575305 2575700 D PFAM: DoxX family protein; KEGG: rfr:Rfer_2574 DoxX; DoxX family protein 2575305..2575700 Parvibaculum lavamentivorans DS-1 5456632 YP_001413653.1 CDS Plav_2386 NC_009719.1 2575704 2577053 D KEGG: gsu:GSU0801 hypothetical protein; hypothetical protein 2575704..2577053 Parvibaculum lavamentivorans DS-1 5456367 YP_001413654.1 CDS Plav_2387 NC_009719.1 2577139 2577480 D PFAM: regulatory protein ArsR; KEGG: bbr:BB0936 putative ArsR family transcriptional regulator; regulatory protein ArsR 2577139..2577480 Parvibaculum lavamentivorans DS-1 5454460 YP_001413655.1 CDS Plav_2388 NC_009719.1 2577477 2577965 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: lil:LA3214 hypothetical protein; activator of Hsp90 ATPase 1 family protein 2577477..2577965 Parvibaculum lavamentivorans DS-1 5455057 YP_001413656.1 CDS Plav_2389 NC_009719.1 2577977 2578612 D KEGG: sma:SAV521 hypothetical protein; hypothetical protein 2577977..2578612 Parvibaculum lavamentivorans DS-1 5454987 YP_001413657.1 CDS Plav_2390 NC_009719.1 2578677 2579141 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bja:blr7360 hypothetical protein; activator of Hsp90 ATPase 1 family protein complement(2578677..2579141) Parvibaculum lavamentivorans DS-1 5455906 YP_001413658.1 CDS Plav_2391 NC_009719.1 2579138 2579485 R PFAM: regulatory protein ArsR; KEGG: bja:blr7359 transcriptional regulatory protein; regulatory protein ArsR complement(2579138..2579485) Parvibaculum lavamentivorans DS-1 5453675 YP_001413659.1 CDS Plav_2392 NC_009719.1 2579601 2581256 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 2579601..2581256 Parvibaculum lavamentivorans DS-1 5454850 YP_001413660.1 CDS Plav_2393 NC_009719.1 2581356 2581607 R SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pmy:Pmen_3214 AraC-type transcriptional regulator domain protein; helix-turn-helix domain-containing protein complement(2581356..2581607) Parvibaculum lavamentivorans DS-1 5455567 YP_001413661.1 CDS Plav_2395 NC_009719.1 2582042 2582797 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pmy:Pmen_3215 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2582042..2582797 Parvibaculum lavamentivorans DS-1 5455711 YP_001413662.1 CDS Plav_2396 NC_009719.1 2582991 2584610 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sensor histidine kinase/response regulator; histidine kinase 2582991..2584610 Parvibaculum lavamentivorans DS-1 5455152 YP_001413663.1 CDS Plav_2397 NC_009719.1 2584621 2585196 R PFAM: protein of unknown function DUF1457; hypothetical protein complement(2584621..2585196) Parvibaculum lavamentivorans DS-1 5455139 YP_001413664.1 CDS Plav_2398 NC_009719.1 2585525 2586187 R PFAM: toluene tolerance family protein; KEGG: hypothetical protein; toluene tolerance family protein complement(2585525..2586187) Parvibaculum lavamentivorans DS-1 5456168 YP_001413665.1 CDS Plav_2399 NC_009719.1 2586264 2587151 R PFAM: VacJ family lipoprotein; KEGG: mag:amb0433 surface lipoprotein; VacJ family lipoprotein complement(2586264..2587151) Parvibaculum lavamentivorans DS-1 5454367 YP_001413666.1 CDS Plav_2400 NC_009719.1 2587383 2588375 D PFAM: regulatory protein ArsR; Methyltransferase type 11; Methyltransferase type 12; KEGG: mag:amb0432 SAM-dependent methyltransferase; type 11 methyltransferase 2587383..2588375 Parvibaculum lavamentivorans DS-1 5454006 YP_001413667.1 CDS Plav_2401 NC_009719.1 2588375 2589277 D TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 2588375..2589277 Parvibaculum lavamentivorans DS-1 5453694 YP_001413668.1 CDS Plav_2402 NC_009719.1 2589288 2590349 D PFAM: homocysteine S-methyltransferase; KEGG: pae:PA1843 methionine synthase; homocysteine S-methyltransferase 2589288..2590349 Parvibaculum lavamentivorans DS-1 5456115 YP_001413669.1 CDS Plav_2403 NC_009719.1 2590400 2593084 D TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; KEGG: ret:RHE_CH02901 5-methyltetrahydrofolate--homocysteine S-methyltransferase protein; methionine synthase 2590400..2593084 Parvibaculum lavamentivorans DS-1 5456923 YP_001413670.1 CDS Plav_2404 NC_009719.1 2593088 2593429 R PFAM: helix-turn-helix HxlR type; KEGG: bja:blr7748 transcriptional regulatory protein; HxlR family transcriptional regulator complement(2593088..2593429) Parvibaculum lavamentivorans DS-1 5454415 YP_001413671.1 CDS Plav_2405 NC_009719.1 2593506 2594060 D PFAM: Carboxymuconolactone decarboxylase; KEGG: bur:Bcep18194_B0960 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 2593506..2594060 Parvibaculum lavamentivorans DS-1 5453725 YP_001413672.1 CDS Plav_2406 NC_009719.1 2594473 2595453 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN5326 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase complement(2594473..2595453) Parvibaculum lavamentivorans DS-1 5455154 YP_001413673.1 CDS Plav_2407 NC_009719.1 2595518 2599135 R PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: ret:RHE_PE00300 probable N-methylhydantoinase (ATP-hydrolyzing)/5-oxoprolinase protein; 5-oxoprolinase complement(2595518..2599135) Parvibaculum lavamentivorans DS-1 5454025 YP_001413674.1 CDS Plav_2408 NC_009719.1 2599261 2599971 D PFAM: heat shock protein DnaJ domain protein; KEGG: mmr:Mmar10_2092 heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 2599261..2599971 Parvibaculum lavamentivorans DS-1 5454746 YP_001413675.1 CDS Plav_2409 NC_009719.1 2600369 2601235 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: hch:HCH_01819 permease of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 2600369..2601235 Parvibaculum lavamentivorans DS-1 5455044 YP_001413676.1 CDS Plav_2410 NC_009719.1 2601235 2601978 D PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rpb:RPB_1985 negative regulator of AmpC, AmpD; N-acetylmuramoyl-L-alanine amidase 2601235..2601978 Parvibaculum lavamentivorans DS-1 5455849 YP_001413677.1 CDS Plav_2411 NC_009719.1 2601975 2602937 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: NADP-dependent quinone oxidoreductase, putative; alcohol dehydrogenase complement(2601975..2602937) Parvibaculum lavamentivorans DS-1 5455106 YP_001413678.1 CDS Plav_2412 NC_009719.1 2603811 2604296 D PFAM: protein of unknown function UPF0040; KEGG: rbe:RBE_0539 MraZ protein; hypothetical protein 2603811..2604296 Parvibaculum lavamentivorans DS-1 5454555 YP_001413679.1 CDS Plav_2413 NC_009719.1 2604293 2605312 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: mag:amb3840 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 2604293..2605312 Parvibaculum lavamentivorans DS-1 5456421 YP_001413680.1 CDS Plav_2414 NC_009719.1 2605309 2605680 D KEGG: nwi:Nwi_1044 hypothetical protein; hypothetical protein 2605309..2605680 Parvibaculum lavamentivorans DS-1 5453931 YP_001413681.1 CDS Plav_2415 NC_009719.1 2605677 2607440 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: nha:Nham_1273 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 2605677..2607440 Parvibaculum lavamentivorans DS-1 5453681 YP_001413682.1 CDS Plav_2416 NC_009719.1 2607510 2608958 D TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: mag:amb3843 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramyl tripeptide synthetase 2607510..2608958 Parvibaculum lavamentivorans DS-1 5456645 YP_001413683.1 CDS Plav_2417 NC_009719.1 2608955 2610394 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rpb:RPB_1990 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 2608955..2610394 Parvibaculum lavamentivorans DS-1 5456848 YP_001413684.1 CDS Plav_2418 NC_009719.1 2610394 2611482 D TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase family 4; KEGG: mag:amb3845 UDP-N-acetylmuramyl pentapeptide phosphotransferase; phospho-N-acetylmuramoyl-pentapeptide- transferase 2610394..2611482 Parvibaculum lavamentivorans DS-1 5454664 YP_001413685.1 CDS murD NC_009719.1 2611487 2612890 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 2611487..2612890 Parvibaculum lavamentivorans DS-1 5455424 YP_001413686.1 CDS Plav_2420 NC_009719.1 2612887 2614035 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: mes:Meso_2008 cell division protein FtsW; cell division protein FtsW 2612887..2614035 Parvibaculum lavamentivorans DS-1 5453939 YP_001413687.1 CDS Plav_2421 NC_009719.1 2614032 2615225 D TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: gbe:GbCGDNIH1_0429 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase 2614032..2615225 Parvibaculum lavamentivorans DS-1 5454744 YP_001413688.1 CDS murC NC_009719.1 2615225 2616700 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 2615225..2616700 Parvibaculum lavamentivorans DS-1 5454532 YP_001413689.1 CDS Plav_2423 NC_009719.1 2616697 2617629 D TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; KEGG: mag:amb3850 UDP-N-acetylenolpyruvoylglucosamine reductase; UDP-N-acetylenolpyruvoylglucosamine reductase 2616697..2617629 Parvibaculum lavamentivorans DS-1 5453785 YP_001413690.1 CDS Plav_2424 NC_009719.1 2617626 2618552 D TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; KEGG: sme:SMc01871 D-alanylalanine synthetase; D-alanine--D-alanine ligase 2617626..2618552 Parvibaculum lavamentivorans DS-1 5454049 YP_001413691.1 CDS Plav_2425 NC_009719.1 2618540 2619544 D PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: mes:Meso_2003 polypeptide-transport-associated, FtsQ-type; polypeptide-transport-associated domain-containing protein 2618540..2619544 Parvibaculum lavamentivorans DS-1 5455731 YP_001413692.1 CDS Plav_2426 NC_009719.1 2619541 2620851 D PFAM: cell division protein FtsA; KEGG: mag:amb3853 actin-like ATPase involved in cell division; cell division protein FtsA 2619541..2620851 Parvibaculum lavamentivorans DS-1 5454068 YP_001413693.1 CDS Plav_2427 NC_009719.1 2620910 2622685 D TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: bmb:BruAb1_1420 FtsZ, cell division protein FtsZ; cell division protein FtsZ 2620910..2622685 Parvibaculum lavamentivorans DS-1 5456746 YP_001413694.1 CDS Plav_2428 NC_009719.1 2622755 2624668 R PFAM: acyltransferase 3; KEGG: azo:azo3255 acyltransferase; acyltransferase 3 complement(2622755..2624668) Parvibaculum lavamentivorans DS-1 5453468 YP_001413695.1 CDS lpxC NC_009719.1 2624980 2625984 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2624980..2625984 Parvibaculum lavamentivorans DS-1 5454742 YP_001413696.1 CDS Plav_2430 NC_009719.1 2626208 2627083 D KEGG: mag:amb3856 DNA uptake lipoprotein; DNA uptake lipoprotein 2626208..2627083 Parvibaculum lavamentivorans DS-1 5453506 YP_001413697.1 CDS Plav_2431 NC_009719.1 2627116 2628789 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rpc:RPC_3295 DNA repair protein RecN; DNA repair protein RecN 2627116..2628789 Parvibaculum lavamentivorans DS-1 5454222 YP_001413698.1 CDS Plav_2432 NC_009719.1 2628800 2630932 D KEGG: mmr:Mmar10_2066 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase; NAD-dependent DNA ligase 2628800..2630932 Parvibaculum lavamentivorans DS-1 5454003 YP_001413699.1 CDS Plav_2433 NC_009719.1 2631065 2632288 D KEGG: rpe:RPE_3493 protein involved in cellulose biosynthesis (CelD)-like protein; protein involved in cellulose biosynthesis (CelD)-like protein 2631065..2632288 Parvibaculum lavamentivorans DS-1 5454207 YP_001413700.1 CDS Plav_2434 NC_009719.1 2632296 2634110 R PFAM: creatinase; peptidase M24; KEGG: bms:BR1418 aminopeptidase P; peptidase M24 complement(2632296..2634110) Parvibaculum lavamentivorans DS-1 5453655 YP_001413701.1 CDS Plav_2435 NC_009719.1 2634152 2635084 R PFAM: putative RNA methylase; methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bmb:BruAb1_1412 ribosomal protein L11 methyltransferase, hypothetical; ribosomal L11 methyltransferase complement(2634152..2635084) Parvibaculum lavamentivorans DS-1 5454113 YP_001413702.1 CDS Plav_2436 NC_009719.1 2635293 2637629 R PFAM: UvrD/REP helicase; KEGG: ret:RHE_CH02819 DNA helicase II protein; UvrD/REP helicase complement(2635293..2637629) Parvibaculum lavamentivorans DS-1 5453972 YP_001413703.1 CDS Plav_2437 NC_009719.1 2637686 2639575 D PFAM: CBS domain containing protein; Chloride channel core; KEGG: bur:Bcep18194_C6569 Cl-channel, voltage gated; chloride channel core protein 2637686..2639575 Parvibaculum lavamentivorans DS-1 5456094 YP_001413704.1 CDS Plav_2438 NC_009719.1 2639759 2640253 R KEGG: rpe:RPE_2139 hypothetical protein; hypothetical protein complement(2639759..2640253) Parvibaculum lavamentivorans DS-1 5456661 YP_001413705.1 CDS Plav_2439 NC_009719.1 2640412 2641806 D PFAM: FAD linked oxidase domain protein; KEGG: rru:Rru_A1124 D-lactate dehydrogenase (cytochrome); D-lactate dehydrogenase 2640412..2641806 Parvibaculum lavamentivorans DS-1 5456071 YP_001413706.1 CDS Plav_2440 NC_009719.1 2642136 2642933 R PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1084 HlyD family secretion protein; secretion protein HlyD family protein complement(2642136..2642933) Parvibaculum lavamentivorans DS-1 5454340 YP_001413707.1 CDS Plav_2441 NC_009719.1 2642937 2643590 R PFAM: regulatory protein TetR; KEGG: rso:RSc0698 putative transcription regulator protein; TetR family transcriptional regulator complement(2642937..2643590) Parvibaculum lavamentivorans DS-1 5455006 YP_001413708.1 CDS Plav_2442 NC_009719.1 2643721 2644077 D hypothetical protein 2643721..2644077 Parvibaculum lavamentivorans DS-1 5454470 YP_001413709.1 CDS Plav_2443 NC_009719.1 2644093 2647533 D PFAM: AsmA family protein; KEGG: ret:RHE_CH02803 hypothetical protein; AsmA family protein 2644093..2647533 Parvibaculum lavamentivorans DS-1 5454436 YP_001413710.1 CDS Plav_2444 NC_009719.1 2647544 2647813 R involved in siderophore biosynthesis; KEGG: rru:Rru_A2208 hypothetical protein; arylsulfate sulfotransferase-like protein complement(2647544..2647813) Parvibaculum lavamentivorans DS-1 5456931 YP_001413711.1 CDS fumC NC_009719.1 2647828 2649228 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(2647828..2649228) Parvibaculum lavamentivorans DS-1 5456911 YP_001413712.1 CDS Plav_2446 NC_009719.1 2649357 2649839 R PFAM: protein of unknown function DUF1321; KEGG: bbt:BBta_6105 hypothetical protein; hypothetical protein complement(2649357..2649839) Parvibaculum lavamentivorans DS-1 5456944 YP_001413713.1 CDS Plav_2447 NC_009719.1 2650349 2651515 R PFAM: peptidase M19 renal dipeptidase; KEGG: mmr:Mmar10_0282 peptidase M19, renal dipeptidase; peptidase M19 complement(2650349..2651515) Parvibaculum lavamentivorans DS-1 5454845 YP_001413714.1 CDS Plav_2448 NC_009719.1 2651704 2652498 D PFAM: thymidylate synthase; KEGG: bmb:BruAb1_1394 ThyA, thymidylate synthase; thymidylate synthase 2651704..2652498 Parvibaculum lavamentivorans DS-1 5453990 YP_001413715.1 CDS Plav_2449 NC_009719.1 2652665 2653174 D PFAM: dihydrofolate reductase region; KEGG: dihydrofolate reductase; dihydrofolate reductase 2652665..2653174 Parvibaculum lavamentivorans DS-1 5455411 YP_001413716.1 CDS Plav_2450 NC_009719.1 2653276 2653944 D KEGG: bja:bll7793 similar to PEP2 protein; PEP2-like protein 2653276..2653944 Parvibaculum lavamentivorans DS-1 5454383 YP_001413717.1 CDS Plav_2451 NC_009719.1 2654046 2655155 D TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gvi:glr4425 glutathione dependent formaldehyde dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase 2654046..2655155 Parvibaculum lavamentivorans DS-1 5455786 YP_001413718.1 CDS Plav_2452 NC_009719.1 2655155 2655994 D TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; KEGG: esterase; S-formylglutathione hydrolase 2655155..2655994 Parvibaculum lavamentivorans DS-1 5456298 YP_001413719.1 CDS Plav_2453 NC_009719.1 2655991 2657268 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bbt:BBta_0261 hypothetical protein; amine oxidase 2655991..2657268 Parvibaculum lavamentivorans DS-1 5455158 YP_001413720.1 CDS Plav_2454 NC_009719.1 2657317 2658234 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: hne:HNE_0464 putative gluconolactonase; SMP-30/gluconolaconase/LRE domain-containing protein 2657317..2658234 Parvibaculum lavamentivorans DS-1 5455671 YP_001413721.1 CDS Plav_2455 NC_009719.1 2658345 2658680 D KEGG: hypothetical protein; hypothetical protein 2658345..2658680 Parvibaculum lavamentivorans DS-1 5455231 YP_001413722.1 CDS Plav_2456 NC_009719.1 2658751 2659497 R PFAM: protein of unknown function DUF1428; KEGG: sal:Sala_0015 protein of unknown function DUF1428; hypothetical protein complement(2658751..2659497) Parvibaculum lavamentivorans DS-1 5455500 YP_001413723.1 CDS Plav_2457 NC_009719.1 2659603 2660751 R PFAM: protein of unknown function DUF59; KEGG: mag:amb3487 ATPase involved in chromosome partitioning; hypothetical protein complement(2659603..2660751) Parvibaculum lavamentivorans DS-1 5455713 YP_001413724.1 CDS Plav_2458 NC_009719.1 2660920 2662116 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: bja:bll6509 putative membrane bound protease protein; HflK protein 2660920..2662116 Parvibaculum lavamentivorans DS-1 5455549 YP_001413725.1 CDS Plav_2459 NC_009719.1 2662116 2662988 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: rpa:RPA3490 putative hflC protein; HflC protein 2662116..2662988 Parvibaculum lavamentivorans DS-1 5453813 YP_001413726.1 CDS Plav_2460 NC_009719.1 2663010 2663195 D KEGG: mlo:msl1453 hypothetical protein; hypothetical protein 2663010..2663195 Parvibaculum lavamentivorans DS-1 5454939 YP_001413727.1 CDS Plav_2461 NC_009719.1 2663283 2664746 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mlo:mll1451 probable serine protease; protease Do 2663283..2664746 Parvibaculum lavamentivorans DS-1 5455789 YP_001413728.1 CDS Plav_2462 NC_009719.1 2664743 2665633 R TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_6089 phosphoserine phosphatase; phosphoserine phosphatase SerB complement(2664743..2665633) Parvibaculum lavamentivorans DS-1 5455822 YP_001413729.1 CDS Plav_2463 NC_009719.1 2665660 2666604 D TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; KEGG: rpa:RPA2030 tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 2665660..2666604 Parvibaculum lavamentivorans DS-1 5455289 YP_001413730.1 CDS Plav_2464 NC_009719.1 2666729 2668486 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: acetolactate synthase large subunit; acetolactate synthase large subunit 2666729..2668486 Parvibaculum lavamentivorans DS-1 5454010 YP_001413731.1 CDS Plav_2465 NC_009719.1 2668545 2669057 D TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: rru:Rru_A0468 acetolactate synthase, small subunit; acetolactate synthase small subunit 2668545..2669057 Parvibaculum lavamentivorans DS-1 5456226 YP_001413732.1 CDS Plav_2466 NC_009719.1 2669087 2670106 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2669087..2670106 Parvibaculum lavamentivorans DS-1 5454982 YP_001413733.1 CDS Plav_2467 NC_009719.1 2670185 2670868 D KEGG: sco:SCO0976 hypothetical protein; hypothetical protein 2670185..2670868 Parvibaculum lavamentivorans DS-1 5453619 YP_001413734.1 CDS Plav_2468 NC_009719.1 2671081 2671518 R PFAM: globin; KEGG: hne:HNE_0903 globin domain protein; globin complement(2671081..2671518) Parvibaculum lavamentivorans DS-1 5454380 YP_001413735.1 CDS Plav_2469 NC_009719.1 2671694 2672440 R KEGG: bja:blr2879 hypothetical protein; hypothetical protein complement(2671694..2672440) Parvibaculum lavamentivorans DS-1 5454474 YP_001413736.1 CDS Plav_2470 NC_009719.1 2672540 2673472 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mlo:mll2984 cation efflux system protein; cation diffusion facilitator family transporter complement(2672540..2673472) Parvibaculum lavamentivorans DS-1 5456280 YP_001413737.1 CDS Plav_2471 NC_009719.1 2673469 2673810 R PFAM: regulatory protein ArsR; KEGG: bxe:Bxe_A0960 transcriptional regulator, ArsR family; regulatory protein ArsR complement(2673469..2673810) Parvibaculum lavamentivorans DS-1 5453624 YP_001413738.1 CDS Plav_2472 NC_009719.1 2673897 2674340 R PFAM: regulatory protein MarR; KEGG: pst:PSPTO_0818 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2673897..2674340) Parvibaculum lavamentivorans DS-1 5453957 YP_001413739.1 CDS Plav_2473 NC_009719.1 2674416 2675123 D PFAM: nitroreductase; KEGG: sen:SACE_6504 oxidoreductase; nitroreductase 2674416..2675123 Parvibaculum lavamentivorans DS-1 5453448 YP_001413740.1 CDS Plav_2474 NC_009719.1 2675196 2676401 D TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: dar:Daro_3552 phosphoribosylglycinamide formyltransferase 2; phosphoribosylglycinamide formyltransferase 2 2675196..2676401 Parvibaculum lavamentivorans DS-1 5453714 YP_001413741.1 CDS Plav_2475 NC_009719.1 2676508 2677266 D PFAM: Helix-turn-helix type 11 domain protein; KEGG: lpp:plpp0104 hypothetical protein; helix-turn-helix domain-containing protein 2676508..2677266 Parvibaculum lavamentivorans DS-1 5454929 YP_001413742.1 CDS Plav_2476 NC_009719.1 2677270 2677641 D KEGG: tfu:Tfu_1573 hypothetical protein; hypothetical protein 2677270..2677641 Parvibaculum lavamentivorans DS-1 5453676 YP_001413743.1 CDS Plav_2477 NC_009719.1 2677725 2678729 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: hne:HNE_3087 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na(+)/Ca(+) antiporter 2677725..2678729 Parvibaculum lavamentivorans DS-1 5456058 YP_001413744.1 CDS Plav_2478 NC_009719.1 2678814 2679773 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cvi:CV0720 probable transcriptional regulator LysR family; LysR family transcriptional regulator 2678814..2679773 Parvibaculum lavamentivorans DS-1 5453502 YP_001413745.1 CDS Plav_2479 NC_009719.1 2680309 2681349 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 2680309..2681349 Parvibaculum lavamentivorans DS-1 5454058 YP_001413746.1 CDS Plav_2480 NC_009719.1 2681423 2682376 D TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: rsq:Rsph17025_1601 rod shape-determining protein MreC; rod shape-determining protein MreC 2681423..2682376 Parvibaculum lavamentivorans DS-1 5453866 YP_001413747.1 CDS Plav_2481 NC_009719.1 2682381 2682914 D KEGG: rru:Rru_A0472 rod shape-determining protein MreD; rod shape-determining protein MreD 2682381..2682914 Parvibaculum lavamentivorans DS-1 5455661 YP_001413748.1 CDS Plav_2482 NC_009719.1 2682939 2684825 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: rru:Rru_A0473 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 2682939..2684825 Parvibaculum lavamentivorans DS-1 5454070 YP_001413749.1 CDS Plav_2483 NC_009719.1 2684825 2685973 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: mag:amb3517 bacterial cell division membrane protein; rod shape-determining protein RodA 2684825..2685973 Parvibaculum lavamentivorans DS-1 5454657 YP_001413750.1 CDS Plav_2484 NC_009719.1 2686227 2687075 R KEGG: reu:Reut_B4998 hypothetical protein; hypothetical protein complement(2686227..2687075) Parvibaculum lavamentivorans DS-1 5453548 YP_001413751.1 CDS Plav_2485 NC_009719.1 2687160 2688506 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mag:amb1428 superfamily II DNA and RNA helicase; DEAD/DEAH box helicase complement(2687160..2688506) Parvibaculum lavamentivorans DS-1 5455177 YP_001413752.1 CDS Plav_2486 NC_009719.1 2688856 2689821 D PFAM: Mg2 transporter protein CorA family protein; KEGG: bbt:BBta_2459 putative magnesium/cobalt transport protein; Mg2 transporter protein CorA family protein 2688856..2689821 Parvibaculum lavamentivorans DS-1 5453942 YP_001413753.1 CDS Plav_2487 NC_009719.1 2689818 2690429 D PFAM: Phosphoglycerate mutase; KEGG: mag:amb0541 fructose-2,6-bisphosphatase; phosphoglycerate mutase 2689818..2690429 Parvibaculum lavamentivorans DS-1 5454036 YP_001413754.1 CDS Plav_2488 NC_009719.1 2690426 2691409 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rpa:RPA3967 putative threonine dehydratase; pyridoxal-5'-phosphate-dependent protein subunit beta 2690426..2691409 Parvibaculum lavamentivorans DS-1 5454928 YP_001413755.1 CDS Plav_2489 NC_009719.1 2691406 2691996 R KEGG: rpa:RPA3966 hypothetical protein; hypothetical protein complement(2691406..2691996) Parvibaculum lavamentivorans DS-1 5453889 YP_001413756.1 CDS Plav_2490 NC_009719.1 2692145 2692759 D KEGG: mmr:Mmar10_2009 hypothetical protein; hypothetical protein 2692145..2692759 Parvibaculum lavamentivorans DS-1 5454370 YP_001413757.1 CDS Plav_2491 NC_009719.1 2692856 2694046 D PFAM: acyltransferase 3; KEGG: bch:Bcen2424_3971 acyltransferase 3; acyltransferase 3 2692856..2694046 Parvibaculum lavamentivorans DS-1 5454030 YP_001413758.1 CDS Plav_2492 NC_009719.1 2694026 2695111 R KEGG: sde:Sde_0483 hypothetical protein; hypothetical protein complement(2694026..2695111) Parvibaculum lavamentivorans DS-1 5456271 YP_001413759.1 CDS Plav_2493 NC_009719.1 2695116 2695832 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmr:Mmar10_2007 methyltransferase type 11; type 11 methyltransferase complement(2695116..2695832) Parvibaculum lavamentivorans DS-1 5454833 YP_001413760.1 CDS Plav_2494 NC_009719.1 2695798 2697156 R PFAM: glycosyl transferase group 1; KEGG: nca:Noca_2799 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2695798..2697156) Parvibaculum lavamentivorans DS-1 5453733 YP_001413761.1 CDS Plav_2495 NC_009719.1 2697315 2697737 R KEGG: bbt:BBta_2163 hypothetical protein; hypothetical protein complement(2697315..2697737) Parvibaculum lavamentivorans DS-1 5455223 YP_001413762.1 CDS Plav_2496 NC_009719.1 2697804 2698199 R hypothetical protein complement(2697804..2698199) Parvibaculum lavamentivorans DS-1 5454865 YP_001413763.1 CDS Plav_2497 NC_009719.1 2698283 2699254 R PFAM: alpha/beta hydrolase fold; KEGG: epoxide hydrolase; alpha/beta hydrolase fold protein complement(2698283..2699254) Parvibaculum lavamentivorans DS-1 5455578 YP_001413764.1 CDS Plav_2498 NC_009719.1 2699303 2700805 R PFAM: FAD dependent oxidoreductase; KEGG: hne:HNE_2414 hypothetical protein; FAD dependent oxidoreductase complement(2699303..2700805) Parvibaculum lavamentivorans DS-1 5455877 YP_001413765.1 CDS Plav_2499 NC_009719.1 2700927 2701313 R PFAM: protein of unknown function DUF423; KEGG: psa:PST_3985 uncharacterized small membrane protein; hypothetical protein complement(2700927..2701313) Parvibaculum lavamentivorans DS-1 5453845 YP_001413766.1 CDS Plav_2500 NC_009719.1 2701504 2702613 D KEGG: hne:HNE_2926 hypothetical protein; hypothetical protein 2701504..2702613 Parvibaculum lavamentivorans DS-1 5455579 YP_001413767.1 CDS Plav_2501 NC_009719.1 2702623 2703663 D PFAM: aminoglycoside phosphotransferase; KEGG: hypothetical protein; aminoglycoside phosphotransferase 2702623..2703663 Parvibaculum lavamentivorans DS-1 5453520 YP_001413768.1 CDS Plav_2502 NC_009719.1 2703660 2704109 D KEGG: hypothetical protein; hypothetical protein 2703660..2704109 Parvibaculum lavamentivorans DS-1 5456860 YP_001413769.1 CDS Plav_2503 NC_009719.1 2704170 2705363 D PFAM: proton/sugar symporter LacY; nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: mag:amb2280 permease of the major facilitator superfamily; major facilitator superfamily transporter 2704170..2705363 Parvibaculum lavamentivorans DS-1 5455558 YP_001413770.1 CDS Plav_2504 NC_009719.1 2705353 2706210 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bra:BRADO4030 putative TauD/TfdA family dioxygenase; taurine dioxygenase 2705353..2706210 Parvibaculum lavamentivorans DS-1 5454689 YP_001413771.1 CDS Plav_2505 NC_009719.1 2706309 2707322 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_0255 alcohol dehydrogenase, zinc-binding protein; alcohol dehydrogenase 2706309..2707322 Parvibaculum lavamentivorans DS-1 5454835 YP_001413772.1 CDS Plav_2506 NC_009719.1 2707390 2707857 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_A2755 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2707390..2707857 Parvibaculum lavamentivorans DS-1 5454496 YP_001413773.1 CDS Plav_2507 NC_009719.1 2707854 2708216 D PFAM: regulatory protein ArsR; KEGG: transcriptional regulator, ArsR family; regulatory protein ArsR 2707854..2708216 Parvibaculum lavamentivorans DS-1 5455000 YP_001413774.1 CDS Plav_2508 NC_009719.1 2708213 2708698 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mes:Meso_4061 hypothetical protein; activator of Hsp90 ATPase 1 family protein 2708213..2708698 Parvibaculum lavamentivorans DS-1 5453680 YP_001413775.1 CDS Plav_2509 NC_009719.1 2708705 2709730 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rpe:RPE_1470 mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; mandelate racemase/muconate lactonizing protein complement(2708705..2709730) Parvibaculum lavamentivorans DS-1 5454933 YP_001413776.1 CDS Plav_2510 NC_009719.1 2709799 2712060 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: bbt:BBta_7152 putative adenylate/guanylyl cyclase with a CHASE2 domain; putative Chase2 sensor protein complement(2709799..2712060) Parvibaculum lavamentivorans DS-1 5455790 YP_001413777.1 CDS Plav_2511 NC_009719.1 2712226 2712624 R PFAM: cytochrome c class I; KEGG: rde:RD1_1518 cytochrome c2; cytochrome c class I complement(2712226..2712624) Parvibaculum lavamentivorans DS-1 5454023 YP_001413778.1 CDS Plav_2512 NC_009719.1 2712776 2713939 D PFAM: protein of unknown function DUF140; KEGG: pen:PSEEN0098 ABC transporter, permease protein; hypothetical protein 2712776..2713939 Parvibaculum lavamentivorans DS-1 5454962 YP_001413779.1 CDS Plav_2513 NC_009719.1 2713936 2714715 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsh:Rsph17029_1488 ABC transporter related; ABC transporter-like protein 2713936..2714715 Parvibaculum lavamentivorans DS-1 5455613 YP_001413780.1 CDS Plav_2514 NC_009719.1 2714721 2715629 D PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN0096 hypothetical protein; hypothetical protein 2714721..2715629 Parvibaculum lavamentivorans DS-1 5454491 YP_001413781.1 CDS Plav_2515 NC_009719.1 2715626 2716312 D KEGG: yen:YE1250 hypothetical protein; ABC transporter auxiliary component-like protein 2715626..2716312 Parvibaculum lavamentivorans DS-1 5455532 YP_001413782.1 CDS Plav_2516 NC_009719.1 2716320 2718614 R KEGG: sme:SMc00190 hypothetical protein; hypothetical protein complement(2716320..2718614) Parvibaculum lavamentivorans DS-1 5456189 YP_001413783.1 CDS Plav_2517 NC_009719.1 2718846 2719232 D PFAM: Hpt domain protein; KEGG: mmr:Mmar10_1987 Hpt protein; Hpt protein 2718846..2719232 Parvibaculum lavamentivorans DS-1 5454139 YP_001413784.1 CDS Plav_2518 NC_009719.1 2719432 2720556 R PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1030 putative conserved exported protein; FAD dependent oxidoreductase complement(2719432..2720556) Parvibaculum lavamentivorans DS-1 5456312 YP_001413785.1 CDS Plav_2519 NC_009719.1 2721016 2722539 R PFAM: sulfatase; KEGG: mlo:mlr3684 phosphonate monoester hydrolase; sulfatase complement(2721016..2722539) Parvibaculum lavamentivorans DS-1 5455757 YP_001413786.1 CDS Plav_2520 NC_009719.1 2722766 2723086 D PFAM: ferredoxin; KEGG: bra:BRADO5081 2Fe-2S ferredoxin (FdII); ferredoxin 2722766..2723086 Parvibaculum lavamentivorans DS-1 5453804 YP_001413787.1 CDS Plav_2521 NC_009719.1 2723096 2723401 R PFAM: Chorismate mutase; KEGG: hne:HNE_0317 putative chorismate mutase, type II; chorismate mutase complement(2723096..2723401) Parvibaculum lavamentivorans DS-1 5456940 YP_001413788.1 CDS Plav_2522 NC_009719.1 2723621 2724652 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpe:RPE_1478 thioredoxin-disulfide reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2723621..2724652 Parvibaculum lavamentivorans DS-1 5454119 YP_001413789.1 CDS Plav_2523 NC_009719.1 2724670 2724993 D PFAM: ferredoxin; KEGG: rru:Rru_A2026 ferredoxin; ferredoxin 2724670..2724993 Parvibaculum lavamentivorans DS-1 5453768 YP_001413790.1 CDS Plav_2524 NC_009719.1 2725034 2725453 D KEGG: gvi:gll2512 hypothetical protein; hypothetical protein 2725034..2725453 Parvibaculum lavamentivorans DS-1 5456958 YP_001413791.1 CDS Plav_2525 NC_009719.1 2725462 2726328 D KEGG: bbt:BBta_2426 hypothetical protein; hypothetical protein 2725462..2726328 Parvibaculum lavamentivorans DS-1 5453809 YP_001413792.1 CDS Plav_2526 NC_009719.1 2726381 2726998 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmr:Mmar10_2552 methyltransferase type 11; type 11 methyltransferase 2726381..2726998 Parvibaculum lavamentivorans DS-1 5454743 YP_001413793.1 CDS Plav_2527 NC_009719.1 2727071 2727898 D KEGG: bra:BRADO2645 hypothetical protein; hypothetical protein 2727071..2727898 Parvibaculum lavamentivorans DS-1 5453365 YP_001413794.1 CDS Plav_2528 NC_009719.1 2727911 2728216 R hypothetical protein complement(2727911..2728216) Parvibaculum lavamentivorans DS-1 5455444 YP_001413795.1 CDS Plav_2529 NC_009719.1 2728235 2728504 R hypothetical protein complement(2728235..2728504) Parvibaculum lavamentivorans DS-1 5455574 YP_001413796.1 CDS Plav_2530 NC_009719.1 2728618 2730264 D involved in DNA repair; KEGG: mag:amb2999 nucleotidyltransferase/DNA polymerase involved in DNA repair; nucleotidyltransferase/DNA polymerase 2728618..2730264 Parvibaculum lavamentivorans DS-1 5456288 YP_001413797.1 CDS Plav_2531 NC_009719.1 2730261 2733518 D KEGG: mmr:Mmar10_1831 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 2730261..2733518 Parvibaculum lavamentivorans DS-1 5456012 YP_001413798.1 CDS Plav_2532 NC_009719.1 2733512 2733904 R KEGG: pmy:Pmen_3703 hypothetical protein; hypothetical protein complement(2733512..2733904) Parvibaculum lavamentivorans DS-1 5454277 YP_001413799.1 CDS Plav_2533 NC_009719.1 2734026 2735057 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sme:SMb20368 hypothetical protein; RND family efflux transporter MFP subunit 2734026..2735057 Parvibaculum lavamentivorans DS-1 5455565 YP_001413800.1 CDS Plav_2534 NC_009719.1 2735066 2736316 D PFAM: protein of unknown function DUF214; KEGG: mag:amb2765 ABC-type transport system; hypothetical protein 2735066..2736316 Parvibaculum lavamentivorans DS-1 5453995 YP_001413801.1 CDS Plav_2535 NC_009719.1 2736313 2737005 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2766 ABC-type antimicrobial peptide transport system; ABC transporter-like protein 2736313..2737005 Parvibaculum lavamentivorans DS-1 5453596 YP_001413802.1 CDS Plav_2536 NC_009719.1 2737002 2738183 R KEGG: hypothetical protein; K09989 hypothetical protein; hypothetical protein complement(2737002..2738183) Parvibaculum lavamentivorans DS-1 5454947 YP_001413803.1 CDS Plav_2537 NC_009719.1 2738717 2739589 D hypothetical protein 2738717..2739589 Parvibaculum lavamentivorans DS-1 5453532 YP_001413804.1 CDS Plav_2538 NC_009719.1 2739966 2740709 R hypothetical protein complement(2739966..2740709) Parvibaculum lavamentivorans DS-1 5453541 YP_001413805.1 CDS Plav_2539 NC_009719.1 2741010 2741621 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ret:RHE_CH02733 probable SAM-dependent methyltransferase protein; type 11 methyltransferase complement(2741010..2741621) Parvibaculum lavamentivorans DS-1 5455135 YP_001413806.1 CDS Plav_2540 NC_009719.1 2741715 2742230 R hypothetical protein complement(2741715..2742230) Parvibaculum lavamentivorans DS-1 5454477 YP_001413807.1 CDS Plav_2541 NC_009719.1 2742562 2743407 R PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_3462 ATPase associated with various cellular activities, AAA_5; ATPase complement(2742562..2743407) Parvibaculum lavamentivorans DS-1 5453771 YP_001413808.1 CDS Plav_2542 NC_009719.1 2743762 2745126 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: bbt:BBta_7242 putative flagellar hook protein FlgE; hypothetical protein 2743762..2745126 Parvibaculum lavamentivorans DS-1 5455515 YP_001413809.1 CDS Plav_2543 NC_009719.1 2745204 2747045 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpb:RPB_3816 flagellar hook-associated protein; flagellar hook-associated protein FlgK 2745204..2747045 Parvibaculum lavamentivorans DS-1 5456887 YP_001413810.1 CDS Plav_2544 NC_009719.1 2747050 2748543 D KEGG: nwi:Nwi_1101 hypothetical protein; hypothetical protein 2747050..2748543 Parvibaculum lavamentivorans DS-1 5454551 YP_001413811.1 CDS Plav_2545 NC_009719.1 2748603 2749040 R KEGG: rle:RL0598 hypothetical protein; hypothetical protein complement(2748603..2749040) Parvibaculum lavamentivorans DS-1 5453882 YP_001413812.1 CDS Plav_2546 NC_009719.1 2749037 2749678 R PFAM: regulatory protein TetR; KEGG: hne:HNE_0025 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2749037..2749678) Parvibaculum lavamentivorans DS-1 5456404 YP_001413813.1 CDS Plav_2547 NC_009719.1 2749880 2750671 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hne:HNE_3131 oxidoreductase, short chain dehydrogenase/reductase family protein; short-chain dehydrogenase/reductase SDR 2749880..2750671 Parvibaculum lavamentivorans DS-1 5455377 YP_001413814.1 CDS Plav_2548 NC_009719.1 2750682 2751857 R PFAM: CBS domain containing protein; HPP family protein?; KEGG: pde:Pden_0317 CBS domain containing protein; HPP family protein complement(2750682..2751857) Parvibaculum lavamentivorans DS-1 5454197 YP_001413815.1 CDS Plav_2549 NC_009719.1 2751979 2752356 R PFAM: flagellar FlaF family protein; KEGG: rpd:RPD_1673 flagellar FlaF; flagellar FlaF family protein complement(2751979..2752356) Parvibaculum lavamentivorans DS-1 5456019 YP_001413816.1 CDS Plav_2550 NC_009719.1 2752340 2752732 R PFAM: flagellar FlbT family protein; KEGG: bja:blr5847 putative flagellar protein FlbT; flagellar FlbT family protein complement(2752340..2752732) Parvibaculum lavamentivorans DS-1 5456153 YP_001413817.1 CDS Plav_2551 NC_009719.1 2752937 2754064 R KEGG: bbt:BBta_5530 putative flagellin protein, C-terminus; putative flagellin protein, C-terminus complement(2752937..2754064) Parvibaculum lavamentivorans DS-1 5457001 YP_001413818.1 CDS Plav_2552 NC_009719.1 2754257 2755438 R KEGG: nha:Nham_1336 hypothetical protein; hypothetical protein complement(2754257..2755438) Parvibaculum lavamentivorans DS-1 5453673 YP_001413819.1 CDS Plav_2553 NC_009719.1 2755816 2757459 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mca:MCA1512 TPR domain protein; hypothetical protein complement(2755816..2757459) Parvibaculum lavamentivorans DS-1 5454530 YP_001413820.1 CDS Plav_2554 NC_009719.1 2757544 2758020 R KEGG: mmr:Mmar10_1954 flagellar basal-body protein FlbY; hypothetical protein complement(2757544..2758020) Parvibaculum lavamentivorans DS-1 5453741 YP_001413821.1 CDS Plav_2555 NC_009719.1 2758017 2758346 R KEGG: chemotactic signal-response protein CheL; hypothetical protein complement(2758017..2758346) Parvibaculum lavamentivorans DS-1 5455121 YP_001413822.1 CDS Plav_2556 NC_009719.1 2758346 2759482 R PFAM: flagellar P-ring protein; KEGG: nwi:Nwi_1111 flagellar P-ring protein precursor; flagellar P-ring protein complement(2758346..2759482) Parvibaculum lavamentivorans DS-1 5454751 YP_001413823.1 CDS fliX NC_009719.1 2759757 2760182 D regulator of the sigma 54 transcriptional activator FlbD; represses FlbD when the class II flagellar structure is absent and activates FlbD when the structure is present; flagellar assembly regulator FliX 2759757..2760182 Parvibaculum lavamentivorans DS-1 5453850 YP_001413824.1 CDS Plav_2558 NC_009719.1 2760313 2760753 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: mlo:mll0773 DnaK suppressor protein; TraR/DksA family transcriptional regulator 2760313..2760753 Parvibaculum lavamentivorans DS-1 5455124 YP_001413825.1 CDS Plav_2559 NC_009719.1 2760833 2761567 R PFAM: flagellar L-ring protein; KEGG: mmr:Mmar10_1949 flagellar L-ring protein; flagellar L-ring protein complement(2760833..2761567) Parvibaculum lavamentivorans DS-1 5456235 YP_001413826.1 CDS flgA NC_009719.1 2761591 2762571 R required for the assembly of the flagellar basal body P-ring; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA complement(2761591..2762571) Parvibaculum lavamentivorans DS-1 5456011 YP_001413827.1 CDS flgG NC_009719.1 2762582 2763367 R makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; flagellar basal body rod protein FlgG complement(2762582..2763367) Parvibaculum lavamentivorans DS-1 5455388 YP_001413828.1 CDS Plav_2562 NC_009719.1 2763397 2764167 R PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mag:amb3496 flagellar basal body rod protein; flagellar basal body rod protein complement(2763397..2764167) Parvibaculum lavamentivorans DS-1 5454866 YP_001413829.1 CDS Plav_2563 NC_009719.1 2764470 2764973 D PFAM: flagellar basal body-associated protein FliL; KEGG: mag:amb3497 flagellar basal body-associated protein; flagellar basal body-associated protein FliL 2764470..2764973 Parvibaculum lavamentivorans DS-1 5453885 YP_001413830.1 CDS fliM NC_009719.1 2765001 2766125 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar motor switch protein FliM 2765001..2766125 Parvibaculum lavamentivorans DS-1 5456122 YP_001413831.1 CDS Plav_2565 NC_009719.1 2766122 2766601 D KEGG: mag:amb3499 hypothetical protein; hypothetical protein 2766122..2766601 Parvibaculum lavamentivorans DS-1 5454948 YP_001413832.1 CDS Plav_2566 NC_009719.1 2766626 2767387 D KEGG: bja:bll5823 hypothetical protein; hypothetical protein 2766626..2767387 Parvibaculum lavamentivorans DS-1 5453552 YP_001413833.1 CDS Plav_2567 NC_009719.1 2767504 2770929 D KEGG: mmr:Mmar10_1941 hypothetical protein; hypothetical protein 2767504..2770929 Parvibaculum lavamentivorans DS-1 5455016 YP_001413834.1 CDS Plav_2568 NC_009719.1 2770926 2771672 R TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: mmr:Mmar10_1940 flagellar biosynthetic protein FliP; flagellar biosynthetic protein FliP complement(2770926..2771672) Parvibaculum lavamentivorans DS-1 5456495 YP_001413835.1 CDS Plav_2569 NC_009719.1 2771669 2772043 R KEGG: rru:Rru_A2829 hypothetical protein; hypothetical protein complement(2771669..2772043) Parvibaculum lavamentivorans DS-1 5455372 YP_001413836.1 CDS Plav_2570 NC_009719.1 2772324 2772752 D KEGG: rpb:RPB_3777 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 2772324..2772752 Parvibaculum lavamentivorans DS-1 5454168 YP_001413837.1 CDS flgC NC_009719.1 2772777 2773196 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 2772777..2773196 Parvibaculum lavamentivorans DS-1 5453648 YP_001413838.1 CDS Plav_2572 NC_009719.1 2773210 2773533 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: fliE; flagellar hook-basal body complex protein FliE; K02408 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 2773210..2773533 Parvibaculum lavamentivorans DS-1 5455003 YP_001413839.1 CDS Plav_2573 NC_009719.1 2773567 2773830 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: rpa:RPA3885 putative flagellar biosynthesis protein fliQ; flagellar biosynthetic protein FliQ 2773567..2773830 Parvibaculum lavamentivorans DS-1 5455022 YP_001413840.1 CDS fliR NC_009719.1 2773846 2774607 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2773846..2774607 Parvibaculum lavamentivorans DS-1 5453792 YP_001413841.1 CDS Plav_2575 NC_009719.1 2774623 2775702 D TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: rpc:RPC_1522 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 2774623..2775702 Parvibaculum lavamentivorans DS-1 5455138 YP_001413842.1 CDS Plav_2576 NC_009719.1 2775763 2778285 D TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: bmb:BruAb1_1044 sensory box histidine kinase/response regulator; multi-sensor hybrid histidine kinase 2775763..2778285 Parvibaculum lavamentivorans DS-1 5456935 YP_001413843.1 CDS Plav_2577 NC_009719.1 2778303 2779418 D PFAM: fatty acid desaturase; KEGG: abo:ABO_2546 fatty acid desaturase, putative; fatty acid desaturase 2778303..2779418 Parvibaculum lavamentivorans DS-1 5456099 YP_001413844.1 CDS Plav_2578 NC_009719.1 2779542 2780639 D KEGG: mlo:mlr0030 recombination protein recA; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 2779542..2780639 Parvibaculum lavamentivorans DS-1 5454886 YP_001413845.1 CDS alaS NC_009719.1 2780805 2783546 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2780805..2783546 Parvibaculum lavamentivorans DS-1 5454726 YP_001413846.1 CDS Plav_2580 NC_009719.1 2784189 2785412 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(2784189..2785412) Parvibaculum lavamentivorans DS-1 5454350 YP_001413847.1 CDS Plav_2581 NC_009719.1 2785580 2786368 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rru:Rru_A0696 RNA methyltransferase TrmH, group 1; RNA methyltransferase 2785580..2786368 Parvibaculum lavamentivorans DS-1 5454335 YP_001413848.1 CDS rpsD NC_009719.1 2788029 2788649 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2788029..2788649 Parvibaculum lavamentivorans DS-1 5453861 YP_001413849.1 CDS Plav_2584 NC_009719.1 2788722 2789060 R TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: mag:amb2117 glutaredoxin-related protein; glutaredoxin-like protein complement(2788722..2789060) Parvibaculum lavamentivorans DS-1 5453737 YP_001413850.1 CDS Plav_2585 NC_009719.1 2789100 2789336 R PFAM: BolA family protein; KEGG: mes:Meso_1276 BolA-like protein; BolA family protein complement(2789100..2789336) Parvibaculum lavamentivorans DS-1 5453537 YP_001413851.1 CDS Plav_2586 NC_009719.1 2789368 2791587 R TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bja:bll5719 phosphoribosylformylglycinamidine synthetase II; phosphoribosylformylglycinamidine synthase II complement(2789368..2791587) Parvibaculum lavamentivorans DS-1 5456116 YP_001413852.1 CDS Plav_2587 NC_009719.1 2791584 2792252 R TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: mes:Meso_1279 phosphoribosylformylglycinamidine synthase I; phosphoribosylformylglycinamidine synthase I complement(2791584..2792252) Parvibaculum lavamentivorans DS-1 5453746 YP_001413853.1 CDS Plav_2588 NC_009719.1 2792255 2792500 R TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: mag:amb1540 phosphoribosylformylglycinamidine synthase; phosphoribosylformylglycinamidine synthase subunit PurS complement(2792255..2792500) Parvibaculum lavamentivorans DS-1 5456482 YP_001413854.1 CDS Plav_2589 NC_009719.1 2792512 2793273 R TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; KEGG: rpe:RPE_1607 phosphoribosylaminoimidazole-succinocarboxamide synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(2792512..2793273) Parvibaculum lavamentivorans DS-1 5454946 YP_001413855.1 CDS Plav_2590 NC_009719.1 2793621 2793938 D PFAM: protein of unknown function DUF1476; KEGG: bbt:BBta_5410 hypothetical protein; hypothetical protein 2793621..2793938 Parvibaculum lavamentivorans DS-1 5456942 YP_001413856.1 CDS Plav_2591 NC_009719.1 2793948 2794454 R PFAM: protein of unknown function DUF1457; hypothetical protein complement(2793948..2794454) Parvibaculum lavamentivorans DS-1 5454545 YP_001413857.1 CDS Plav_2592 NC_009719.1 2794563 2795267 R PFAM: regulatory protein TetR; KEGG: mbb:BCG_0369c hypothetical protein; regulatory protein TetR complement(2794563..2795267) Parvibaculum lavamentivorans DS-1 5454543 YP_001413858.1 CDS Plav_2593 NC_009719.1 2795371 2797290 D PFAM: Pyrrolo-quinoline quinone; KEGG: swi:Swit_1054 quinoprotein glucose dehydrogenase; quinoprotein glucose dehydrogenase 2795371..2797290 Parvibaculum lavamentivorans DS-1 5454590 YP_001413859.1 CDS Plav_2594 NC_009719.1 2797294 2798016 R PFAM: Phosphoglycerate mutase; KEGG: hne:HNE_1982 phosphoglycerate mutase family protein; phosphoglycerate mutase complement(2797294..2798016) Parvibaculum lavamentivorans DS-1 5455509 YP_001413860.1 CDS Plav_2595 NC_009719.1 2798089 2798487 R PFAM: PilT protein domain protein; KEGG: atc:AGR_L_3577 hypothetical protein; PilT domain-containing protein complement(2798089..2798487) Parvibaculum lavamentivorans DS-1 5455235 YP_001413861.1 CDS Plav_2596 NC_009719.1 2798492 2798731 R TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: atc:AGR_L_3576 hypothetical protein; AbrB family transcriptional regulator complement(2798492..2798731) Parvibaculum lavamentivorans DS-1 5453591 YP_001413862.1 CDS Plav_2597 NC_009719.1 2798804 2800141 R TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: mlo:mll0079 adenylosuccinate lyase; adenylosuccinate lyase complement(2798804..2800141) Parvibaculum lavamentivorans DS-1 5456613 YP_001413863.1 CDS Plav_2598 NC_009719.1 2800308 2801732 D PFAM: Amidase; KEGG: rpa:RPA3959 putative amidase; amidase 2800308..2801732 Parvibaculum lavamentivorans DS-1 5454126 YP_001413864.1 CDS Plav_2599 NC_009719.1 2802319 2803011 R PFAM: DNA repair protein RadC; KEGG: nha:Nham_0430 DNA repair protein RadC; DNA repair protein RadC complement(2802319..2803011) Parvibaculum lavamentivorans DS-1 5454357 YP_001413865.1 CDS Plav_2600 NC_009719.1 2803021 2803842 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: rle:RL2069 putative methionine aminopeptidase; methionine aminopeptidase complement(2803021..2803842) Parvibaculum lavamentivorans DS-1 5456315 YP_001413866.1 CDS Plav_2601 NC_009719.1 2804023 2804790 D PFAM: molybdopterin binding domain; KEGG: mlo:mll0144 hypothetical protein; molybdopterin-binding domain-containing protein 2804023..2804790 Parvibaculum lavamentivorans DS-1 5455030 YP_001413867.1 CDS Plav_2602 NC_009719.1 2805649 2806416 D KEGG: saz:Sama_2652 conserved hypothetical protein; hypothetical protein 2805649..2806416 Parvibaculum lavamentivorans DS-1 5455379 YP_001413868.1 CDS Plav_2603 NC_009719.1 2806469 2808526 D proton-motive-force-driven choline transporter; choline transport protein BetT 2806469..2808526 Parvibaculum lavamentivorans DS-1 5455797 YP_001413869.1 CDS Plav_2604 NC_009719.1 2808569 2810257 D TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sdn:Sden_0715 choline dehydrogenase; choline dehydrogenase 2808569..2810257 Parvibaculum lavamentivorans DS-1 5455046 YP_001413870.1 CDS Plav_2605 NC_009719.1 2810259 2810522 R KEGG: mes:Meso_1118 hypothetical protein; hypothetical protein complement(2810259..2810522) Parvibaculum lavamentivorans DS-1 5455538 YP_001413871.1 CDS Plav_2606 NC_009719.1 2811254 2811937 D hypothetical protein 2811254..2811937 Parvibaculum lavamentivorans DS-1 5453568 YP_001413872.1 CDS Plav_2607 NC_009719.1 2812001 2814787 R KEGG: cch:Cag_1309 methylase; methylase complement(2812001..2814787) Parvibaculum lavamentivorans DS-1 5455473 YP_001413873.1 CDS Plav_2608 NC_009719.1 2814974 2815693 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bam:Bamb_2589 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator complement(2814974..2815693) Parvibaculum lavamentivorans DS-1 5453519 YP_001413874.1 CDS Plav_2609 NC_009719.1 2815816 2816589 D PFAM: class II aldolase/adducin family protein; KEGG: pat:Patl_3366 class II aldolase/adducin-like; class II aldolase/adducin family protein 2815816..2816589 Parvibaculum lavamentivorans DS-1 5454600 YP_001413875.1 CDS Plav_2610 NC_009719.1 2816716 2817288 D PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: pfl:PFL_1586 hypothetical protein; metal dependent phosphohydrolase 2816716..2817288 Parvibaculum lavamentivorans DS-1 5453497 YP_001413876.1 CDS Plav_2611 NC_009719.1 2817436 2818878 D PFAM: major facilitator superfamily MFS_1; KEGG: ter:Tery_2105 sodium:galactoside symporter family protein; major facilitator superfamily transporter 2817436..2818878 Parvibaculum lavamentivorans DS-1 5454645 YP_001413877.1 CDS Plav_2612 NC_009719.1 2818881 2819633 D PFAM: alpha/beta hydrolase fold; KEGG: rpb:RPB_2134 alpha/beta hydrolase; alpha/beta hydrolase fold protein 2818881..2819633 Parvibaculum lavamentivorans DS-1 5456329 YP_001413878.1 CDS Plav_2613 NC_009719.1 2819661 2821022 D KEGG: ter:Tery_2105 sodium:galactoside symporter family protein; sodium:galactoside symporter family protein 2819661..2821022 Parvibaculum lavamentivorans DS-1 5455901 YP_001413879.1 CDS Plav_2614 NC_009719.1 2821027 2822283 R TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rha:RHA1_ro06259 probable amidohydrolase; amidohydrolase complement(2821027..2822283) Parvibaculum lavamentivorans DS-1 5456395 YP_001413880.1 CDS Plav_2615 NC_009719.1 2822375 2823121 D PFAM: alpha/beta hydrolase fold; KEGG: bmb:BruAb1_1266 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold protein 2822375..2823121 Parvibaculum lavamentivorans DS-1 5455761 YP_001413881.1 CDS Plav_2616 NC_009719.1 2823336 2824127 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(2823336..2824127) Parvibaculum lavamentivorans DS-1 5453378 YP_001413882.1 CDS Plav_2617 NC_009719.1 2824217 2824579 R hypothetical protein complement(2824217..2824579) Parvibaculum lavamentivorans DS-1 5455256 YP_001413883.1 CDS Plav_2618 NC_009719.1 2824691 2825083 D PFAM: protein of unknown function DUF427; KEGG: rpb:RPB_3711 protein of unknown function DUF427; hypothetical protein 2824691..2825083 Parvibaculum lavamentivorans DS-1 5456174 YP_001413884.1 CDS Plav_2619 NC_009719.1 2825107 2825970 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2825107..2825970) Parvibaculum lavamentivorans DS-1 5456266 YP_001413885.1 CDS Plav_2620 NC_009719.1 2826184 2826984 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2826184..2826984) Parvibaculum lavamentivorans DS-1 5453377 YP_001413886.1 CDS Plav_2621 NC_009719.1 2827161 2828699 R PFAM: sulfatase; KEGG: cno:NT01CX_0300 probable sulfatase; sulfatase complement(2827161..2828699) Parvibaculum lavamentivorans DS-1 5454260 YP_001413887.1 CDS Plav_2622 NC_009719.1 2829088 2829291 R hypothetical protein complement(2829088..2829291) Parvibaculum lavamentivorans DS-1 5454382 YP_001413888.1 CDS Plav_2623 NC_009719.1 2829376 2830185 R PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro03350 probable hydrolase; alpha/beta hydrolase fold protein complement(2829376..2830185) Parvibaculum lavamentivorans DS-1 5454419 YP_001413889.1 CDS Plav_2624 NC_009719.1 2830378 2831205 D TIGRFAM: serine O-acetyltransferase; PFAM: serine acetyltransferase domain protein; KEGG: rpc:RPC_3144 serine O-acetyltransferase; serine O-acetyltransferase 2830378..2831205 Parvibaculum lavamentivorans DS-1 5453616 YP_001413890.1 CDS Plav_2625 NC_009719.1 2831213 2832484 R PFAM: FAD dependent oxidoreductase; KEGG: rsq:Rsph17025_0863 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2831213..2832484) Parvibaculum lavamentivorans DS-1 5453705 YP_001413891.1 CDS Plav_2626 NC_009719.1 2832491 2832766 R hypothetical protein complement(2832491..2832766) Parvibaculum lavamentivorans DS-1 5454081 YP_001413892.1 CDS Plav_2627 NC_009719.1 2832918 2833724 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A0884 dehydrogenase; short-chain dehydrogenase/reductase SDR 2832918..2833724 Parvibaculum lavamentivorans DS-1 5453555 YP_001413893.1 CDS Plav_2628 NC_009719.1 2834065 2834277 D KEGG: mes:Meso_1728 hypothetical protein; hypothetical protein 2834065..2834277 Parvibaculum lavamentivorans DS-1 5454761 YP_001413894.1 CDS Plav_2629 NC_009719.1 2834280 2835056 R KEGG: ret:RHE_CH02210 hypothetical protein; hypothetical protein complement(2834280..2835056) Parvibaculum lavamentivorans DS-1 5454745 YP_001413895.1 CDS Plav_2630 NC_009719.1 2835271 2835636 D hypothetical protein 2835271..2835636 Parvibaculum lavamentivorans DS-1 5455495 YP_001413896.1 CDS Plav_2631 NC_009719.1 2835675 2835986 D KEGG: bra:BRADO2943 conserved hypothetical protein; putative membrane protein; putative exported protein; hypothetical protein 2835675..2835986 Parvibaculum lavamentivorans DS-1 5453547 YP_001413897.1 CDS Plav_2632 NC_009719.1 2835983 2837077 R KEGG: rpe:RPE_2309 hypothetical protein; hypothetical protein complement(2835983..2837077) Parvibaculum lavamentivorans DS-1 5454800 YP_001413898.1 CDS Plav_2633 NC_009719.1 2837157 2839148 R PFAM: protein of unknown function DUF839; KEGG: mes:Meso_0954 twin-arginine translocation pathway signal; hypothetical protein complement(2837157..2839148) Parvibaculum lavamentivorans DS-1 5454398 YP_001413899.1 CDS Plav_2634 NC_009719.1 2839296 2839826 D PFAM: transferase hexapeptide repeat containing protein; KEGG: bacterial transferase family protein; hexapaptide repeat-containing transferase 2839296..2839826 Parvibaculum lavamentivorans DS-1 5453997 YP_001413900.1 CDS Plav_2635 NC_009719.1 2839826 2840299 D PFAM: protein of unknown function DUF192; KEGG: rpd:RPD_2531 protein of unknown function DUF192; hypothetical protein 2839826..2840299 Parvibaculum lavamentivorans DS-1 5453361 YP_001413901.1 CDS Plav_2636 NC_009719.1 2840361 2841185 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_3917 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2840361..2841185 Parvibaculum lavamentivorans DS-1 5456986 YP_001413902.1 CDS Plav_2637 NC_009719.1 2841264 2842427 D hypothetical protein 2841264..2842427 Parvibaculum lavamentivorans DS-1 5453563 YP_001413903.1 CDS Plav_2638 NC_009719.1 2842446 2842895 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: mes:Meso_1471 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(2842446..2842895) Parvibaculum lavamentivorans DS-1 5454784 YP_001413904.1 CDS Plav_2639 NC_009719.1 2843049 2843858 R KEGG: mmr:Mmar10_1074 hypothetical protein; hypothetical protein complement(2843049..2843858) Parvibaculum lavamentivorans DS-1 5456971 YP_001413905.1 CDS Plav_2640 NC_009719.1 2844050 2844823 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2844050..2844823 Parvibaculum lavamentivorans DS-1 5453515 YP_001413906.1 CDS Plav_2641 NC_009719.1 2844923 2845681 R PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: bbt:BBta_5218 putative exported protein of unknown function; transglutaminase complement(2844923..2845681) Parvibaculum lavamentivorans DS-1 5454172 YP_001413907.1 CDS Plav_2642 NC_009719.1 2846014 2846721 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: hne:HNE_2777 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase complement(2846014..2846721) Parvibaculum lavamentivorans DS-1 5454440 YP_001413908.1 CDS Plav_2643 NC_009719.1 2846764 2847381 R PFAM: type IV pilus assembly PilZ; KEGG: mes:Meso_1725 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(2846764..2847381) Parvibaculum lavamentivorans DS-1 5456890 YP_001413909.1 CDS Plav_2644 NC_009719.1 2847636 2849360 D catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 2847636..2849360 Parvibaculum lavamentivorans DS-1 5456666 YP_001413910.1 CDS Plav_2645 NC_009719.1 2849440 2850111 R PFAM: protein of unknown function DUF1457; KEGG: mes:Meso_1724 hypothetical protein; hypothetical protein complement(2849440..2850111) Parvibaculum lavamentivorans DS-1 5455115 YP_001413911.1 CDS Plav_2646 NC_009719.1 2850575 2851495 D KEGG: mmr:Mmar10_1077 hypothetical protein; hypothetical protein 2850575..2851495 Parvibaculum lavamentivorans DS-1 5454711 YP_001413912.1 CDS Plav_2647 NC_009719.1 2851700 2852131 R KEGG: psa:PST_0360 hypothetical protein; hypothetical protein complement(2851700..2852131) Parvibaculum lavamentivorans DS-1 5454062 YP_001413913.1 CDS Plav_2648 NC_009719.1 2852218 2852661 R KEGG: psa:PST_0360 hypothetical protein; hypothetical protein complement(2852218..2852661) Parvibaculum lavamentivorans DS-1 5456239 YP_001413914.1 CDS Plav_2649 NC_009719.1 2852751 2853251 R KEGG: reh:H16_A3181 hypothetical protein; hypothetical protein complement(2852751..2853251) Parvibaculum lavamentivorans DS-1 5455470 YP_001413915.1 CDS Plav_2650 NC_009719.1 2853444 2853761 D PFAM: small multidrug resistance protein; KEGG: ent:Ent638_0337 small multidrug resistance protein; small multidrug resistance protein 2853444..2853761 Parvibaculum lavamentivorans DS-1 5456801 YP_001413916.1 CDS Plav_2651 NC_009719.1 2853970 2854998 R KEGG: HfaB protein; HfaB protein complement(2853970..2854998) Parvibaculum lavamentivorans DS-1 5456804 YP_001413917.1 CDS Plav_2652 NC_009719.1 2855303 2855959 D PFAM: DSBA oxidoreductase; KEGG: rpb:RPB_3208 DsbA oxidoreductase; DSBA oxidoreductase 2855303..2855959 Parvibaculum lavamentivorans DS-1 5456921 YP_001413918.1 CDS Plav_2653 NC_009719.1 2855952 2856752 D PFAM: Rhomboid family protein; KEGG: sme:SMc01001 hypothetical protein; rhomboid family protein 2855952..2856752 Parvibaculum lavamentivorans DS-1 5454451 YP_001413919.1 CDS Plav_2654 NC_009719.1 2856832 2857167 D KEGG: tcx:Tcr_2034 lipase-like; hypothetical protein 2856832..2857167 Parvibaculum lavamentivorans DS-1 5454618 YP_001413920.1 CDS Plav_2655 NC_009719.1 2857151 2857831 R PFAM: regulatory protein TetR; KEGG: sen:SACE_0012 TetR-family transcriptional regulator; TetR family transcriptional regulator complement(2857151..2857831) Parvibaculum lavamentivorans DS-1 5453629 YP_001413921.1 CDS Plav_2656 NC_009719.1 2857944 2859377 D PFAM: Carotenoid oxygenase; KEGG: bbt:BBta_5477 putative carotenoid oxygenase; carotenoid oxygenase 2857944..2859377 Parvibaculum lavamentivorans DS-1 5453609 YP_001413922.1 CDS Plav_2657 NC_009719.1 2859604 2860212 R PFAM: regulatory protein TetR; KEGG: hch:HCH_02930 transcriptional regulator; TetR family transcriptional regulator complement(2859604..2860212) Parvibaculum lavamentivorans DS-1 5453406 YP_001413923.1 CDS Plav_2658 NC_009719.1 2860298 2860699 D PFAM: YCII-related; KEGG: sth:STH1648 hypothetical protein; hypothetical protein 2860298..2860699 Parvibaculum lavamentivorans DS-1 5454157 YP_001413924.1 CDS Plav_2659 NC_009719.1 2860711 2861310 R KEGG: bja:bll0405 hypothetical protein; hypothetical protein complement(2860711..2861310) Parvibaculum lavamentivorans DS-1 5454021 YP_001413925.1 CDS Plav_2660 NC_009719.1 2861307 2862602 R KEGG: mmr:Mmar10_1086 membrane protein-like protein; membrane protein complement(2861307..2862602) Parvibaculum lavamentivorans DS-1 5457019 YP_001413926.1 CDS Plav_2661 NC_009719.1 2862760 2863293 D PFAM: CBS domain containing protein; KEGG: bra:BRADO2961 conserved hypothetical protein with 2 CBS domains; signal-transduction protein 2862760..2863293 Parvibaculum lavamentivorans DS-1 5455568 YP_001413927.1 CDS Plav_2662 NC_009719.1 2863299 2864405 R PFAM: Patatin; KEGG: rpd:RPD_3270 patatin; patatin complement(2863299..2864405) Parvibaculum lavamentivorans DS-1 5455418 YP_001413928.1 CDS Plav_2663 NC_009719.1 2864661 2865113 R PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: rpa:RPA3390 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase complement(2864661..2865113) Parvibaculum lavamentivorans DS-1 5457016 YP_001413929.1 CDS Plav_2664 NC_009719.1 2865179 2865847 R PFAM: GTP cyclohydrolase I; KEGG: mmr:Mmar10_2399 GTP cyclohydrolase I; GTP cyclohydrolase I complement(2865179..2865847) Parvibaculum lavamentivorans DS-1 5453373 YP_001413930.1 CDS cysS NC_009719.1 2866355 2867761 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2866355..2867761 Parvibaculum lavamentivorans DS-1 5453635 YP_001413931.1 CDS Plav_2666 NC_009719.1 2867762 2868262 D PFAM: nitrogen-fixing NifU domain protein; KEGG: rpe:RPE_2347 nitrogen-fixing NifU domain protein; NifU domain-containing protein 2867762..2868262 Parvibaculum lavamentivorans DS-1 5454108 YP_001413932.1 CDS Plav_2667 NC_009719.1 2868420 2868734 D PFAM: protein of unknown function DUF37; KEGG: bov:BOV_1039 conserved hypothetical protein TIGR00278; hypothetical protein 2868420..2868734 Parvibaculum lavamentivorans DS-1 5456898 YP_001413933.1 CDS Plav_2668 NC_009719.1 2868744 2870702 D TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: hne:HNE_3196 threonyl-tRNA synthetase; threonyl-tRNA synthetase 2868744..2870702 Parvibaculum lavamentivorans DS-1 5454215 YP_001413934.1 CDS Plav_2669 NC_009719.1 2870850 2871248 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: aba:Acid345_4170 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase complement(2870850..2871248) Parvibaculum lavamentivorans DS-1 5456976 YP_001413935.1 CDS Plav_2670 NC_009719.1 2871266 2871808 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mxa:MXAN_0676 Aha1 domain protien; activator of Hsp90 ATPase 1 family protein complement(2871266..2871808) Parvibaculum lavamentivorans DS-1 5455342 YP_001413936.1 CDS Plav_2671 NC_009719.1 2871840 2872160 R PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: neu:NE0263 bacterial regulatory proteins, ArsR family; regulatory protein ArsR complement(2871840..2872160) Parvibaculum lavamentivorans DS-1 5455371 YP_001413937.1 CDS Plav_2672 NC_009719.1 2872303 2874057 D KEGG: bba:Bd1177 hypothetical protein; hypothetical protein 2872303..2874057 Parvibaculum lavamentivorans DS-1 5456943 YP_001413938.1 CDS Plav_2673 NC_009719.1 2874059 2874880 R KEGG: hypothetical protein; hypothetical protein complement(2874059..2874880) Parvibaculum lavamentivorans DS-1 5454478 YP_001413939.1 CDS Plav_2674 NC_009719.1 2874996 2875580 D PFAM: nitroreductase; KEGG: mmr:Mmar10_1061 nitroreductase; nitroreductase 2874996..2875580 Parvibaculum lavamentivorans DS-1 5455268 YP_001413940.1 CDS Plav_2675 NC_009719.1 2875584 2875871 R hypothetical protein complement(2875584..2875871) Parvibaculum lavamentivorans DS-1 5455250 YP_001413941.1 CDS Plav_2676 NC_009719.1 2875958 2876686 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sme:SMc00893 putative phosphoglycolate phosphatase; HAD family hydrolase 2875958..2876686 Parvibaculum lavamentivorans DS-1 5454125 YP_001413942.1 CDS Plav_2677 NC_009719.1 2876683 2877492 R PFAM: Phytanoyl-CoA dioxygenase; KEGG: rpa:RPA0441 hypothetical protein; phytanoyl-CoA dioxygenase complement(2876683..2877492) Parvibaculum lavamentivorans DS-1 5455193 YP_001413943.1 CDS Plav_2678 NC_009719.1 2877544 2878986 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: swi:Swit_1062 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(2877544..2878986) Parvibaculum lavamentivorans DS-1 5454690 YP_001413944.1 CDS Plav_2679 NC_009719.1 2879139 2880470 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: ret:RHE_CH02716 chromate transporter protein; chromate transporter 2879139..2880470 Parvibaculum lavamentivorans DS-1 5453698 YP_001413945.1 CDS Plav_2680 NC_009719.1 2880578 2882317 R PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: reu:Reut_B5252 hypothetical protein; amidohydrolase 3 complement(2880578..2882317) Parvibaculum lavamentivorans DS-1 5454100 YP_001413946.1 CDS Plav_2681 NC_009719.1 2882420 2883340 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rpa:RPA3271 putative D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(2882420..2883340) Parvibaculum lavamentivorans DS-1 5453510 YP_001413947.1 CDS Plav_2682 NC_009719.1 2883348 2884199 R PFAM: HpcH/HpaI aldolase; KEGG: mlo:mlr0906 citrate lyase beta chain; citrate (pro-3S)-lyase complement(2883348..2884199) Parvibaculum lavamentivorans DS-1 5453606 YP_001413948.1 CDS Plav_2683 NC_009719.1 2884203 2884667 R PFAM: MaoC domain protein dehydratase; KEGG: mlo:mlr0905 probable monoamine oxidase regulatory protein; dehydratase complement(2884203..2884667) Parvibaculum lavamentivorans DS-1 5454604 YP_001413949.1 CDS Plav_2684 NC_009719.1 2884766 2885935 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2884766..2885935 Parvibaculum lavamentivorans DS-1 5456968 YP_001413950.1 CDS Plav_2685 NC_009719.1 2885944 2886351 D PFAM: histidine triad (HIT) protein; KEGG: hch:HCH_04937 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; histidine triad (HIT) protein 2885944..2886351 Parvibaculum lavamentivorans DS-1 5456346 YP_001413951.1 CDS Plav_2686 NC_009719.1 2886444 2886905 D PFAM: response regulator receiver; KEGG: eli:ELI_04825 chemotaxis protein CheYIV; response regulator receiver protein 2886444..2886905 Parvibaculum lavamentivorans DS-1 5453398 YP_001413952.1 CDS Plav_2687 NC_009719.1 2887049 2888467 R PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA4654 probable major facilitator superfamily (MFS) transporter; major facilitator superfamily transporter complement(2887049..2888467) Parvibaculum lavamentivorans DS-1 5453774 YP_001413953.1 CDS Plav_2688 NC_009719.1 2888639 2889637 D KEGG: rpb:RPB_2186 hypothetical protein; hypothetical protein 2888639..2889637 Parvibaculum lavamentivorans DS-1 5454295 YP_001413954.1 CDS Plav_2689 NC_009719.1 2889932 2890369 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bsu:BG13011 similar to hypothetical proteins; BadM/Rrf2 family transcriptional regulator complement(2889932..2890369) Parvibaculum lavamentivorans DS-1 5454798 YP_001413955.1 CDS Plav_2690 NC_009719.1 2890482 2890949 D PFAM: globin; KEGG: swi:Swit_5297 sec-independent protein translocase protein TatC; globin 2890482..2890949 Parvibaculum lavamentivorans DS-1 5454846 YP_001413956.1 CDS Plav_2691 NC_009719.1 2891023 2893740 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rpd:RPD_1436 ATPase, E1-E2 type; HAD superfamily P-type ATPase 2891023..2893740 Parvibaculum lavamentivorans DS-1 5453704 YP_001413957.1 CDS Plav_2692 NC_009719.1 2893827 2897102 D PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpa:RPA1450 putative pyruvate carboxylase; carbamoyl-phosphate synthase L chain ATP-binding 2893827..2897102 Parvibaculum lavamentivorans DS-1 5453729 YP_001413958.1 CDS Plav_2693 NC_009719.1 2897106 2898197 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: nar:Saro_3603 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(2897106..2898197) Parvibaculum lavamentivorans DS-1 5453539 YP_001413959.1 CDS Plav_2694 NC_009719.1 2898286 2899152 R PFAM: Glutathione S-transferase domain; KEGG: abo:ABO_2425 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(2898286..2899152) Parvibaculum lavamentivorans DS-1 5453621 YP_001413960.1 CDS Plav_2695 NC_009719.1 2899195 2900391 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hne:HNE_1823 E-cinnamoyl-CoA:R-phenyllactate CoA transferase, large subunit; L-carnitine dehydratase/bile acid-inducible protein F complement(2899195..2900391) Parvibaculum lavamentivorans DS-1 5454347 YP_001413961.1 CDS Plav_2696 NC_009719.1 2900548 2900961 D PFAM: DoxX family protein; KEGG: bxe:Bxe_A1140 hypothetical protein; DoxX family protein 2900548..2900961 Parvibaculum lavamentivorans DS-1 5454250 YP_001413962.1 CDS Plav_2697 NC_009719.1 2901076 2902209 D KEGG: hne:HNE_2068 hypothetical protein; hypothetical protein 2901076..2902209 Parvibaculum lavamentivorans DS-1 5453449 YP_001413963.1 CDS Plav_2698 NC_009719.1 2902292 2903506 D TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; KEGG: rso:RSc2252 probable beta-ketoadipyl CoA thiolase protein; beta-ketoadipyl CoA thiolase 2902292..2903506 Parvibaculum lavamentivorans DS-1 5456574 YP_001413964.1 CDS Plav_2699 NC_009719.1 2903510 2904706 R PFAM: EAL domain protein; KEGG: mpt:Mpe_A0214 signal transduction protein; diguanylate phosphodiesterase complement(2903510..2904706) Parvibaculum lavamentivorans DS-1 5456696 YP_001413965.1 CDS Plav_2700 NC_009719.1 2904855 2905676 D PFAM: NUDIX hydrolase; KEGG: bbt:BBta_5001 hypothetical protein; NUDIX hydrolase 2904855..2905676 Parvibaculum lavamentivorans DS-1 5456624 YP_001413966.1 CDS Plav_2701 NC_009719.1 2905911 2906678 R PFAM: ATP-NAD/AcoX kinase; KEGG: mag:amb0162 predicted sugar kinase; NAD(+) kinase complement(2905911..2906678) Parvibaculum lavamentivorans DS-1 5456914 YP_001413967.1 CDS Plav_2702 NC_009719.1 2906755 2907096 D PFAM: CutA1 divalent ion tolerance protein; KEGG: swi:Swit_1359 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 2906755..2907096 Parvibaculum lavamentivorans DS-1 5453773 YP_001413968.1 CDS Plav_2703 NC_009719.1 2907093 2908130 R TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bms:BR0958 molybdenum cofactor biosynthesis protein A; molybdenum cofactor biosynthesis protein A complement(2907093..2908130) Parvibaculum lavamentivorans DS-1 5454141 YP_001413969.1 CDS Plav_2704 NC_009719.1 2908241 2909734 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: pde:Pden_4386 glycerol kinase; glycerol kinase 2908241..2909734 Parvibaculum lavamentivorans DS-1 5456098 YP_001413970.1 CDS Plav_2705 NC_009719.1 2909887 2911296 D PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_2091 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 2909887..2911296 Parvibaculum lavamentivorans DS-1 5453543 YP_001413971.1 CDS Plav_2706 NC_009719.1 2911326 2911601 D hypothetical protein 2911326..2911601 Parvibaculum lavamentivorans DS-1 5454325 YP_001413972.1 CDS Plav_2707 NC_009719.1 2911689 2912465 D PFAM: class II aldolase/adducin family protein; KEGG: hne:HNE_2063 aldolase, class II; class II aldolase/adducin family protein 2911689..2912465 Parvibaculum lavamentivorans DS-1 5453930 YP_001413973.1 CDS Plav_2708 NC_009719.1 2912560 2914899 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: acr:Acry_1968 carbon-monoxide dehydrogenase (acceptor); molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase 2912560..2914899 Parvibaculum lavamentivorans DS-1 5453620 YP_001413974.1 CDS Plav_2709 NC_009719.1 2915007 2915711 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: hne:HNE_1702 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 2915007..2915711 Parvibaculum lavamentivorans DS-1 5453558 YP_001413975.1 CDS Plav_2710 NC_009719.1 2915715 2916374 R PFAM: putative RNA methylase; UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: sal:Sala_2559 methyltransferase type 11; type 11 methyltransferase complement(2915715..2916374) Parvibaculum lavamentivorans DS-1 5453920 YP_001413976.1 CDS Plav_2711 NC_009719.1 2916492 2917934 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A0428 major facilitator superfamily (MFS) sugar transporter; major facilitator superfamily transporter 2916492..2917934 Parvibaculum lavamentivorans DS-1 5453708 YP_001413977.1 CDS Plav_2712 NC_009719.1 2918010 2918693 D PFAM: regulatory protein TetR; KEGG: bha:BH0580 transcriptional regulator (TetR/AcrR family); TetR family transcriptional regulator 2918010..2918693 Parvibaculum lavamentivorans DS-1 5454973 YP_001413978.1 CDS Plav_2713 NC_009719.1 2918738 2919772 D hypothetical protein 2918738..2919772 Parvibaculum lavamentivorans DS-1 5453985 YP_001413979.1 CDS Plav_2714 NC_009719.1 2919769 2920653 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pat:Patl_2956 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2919769..2920653 Parvibaculum lavamentivorans DS-1 5454705 YP_001413980.1 CDS Plav_2715 NC_009719.1 2920780 2921220 D hypothetical protein 2920780..2921220 Parvibaculum lavamentivorans DS-1 5455055 YP_001413981.1 CDS Plav_2716 NC_009719.1 2921280 2921837 R KEGG: rpa:RPA3309 hypothetical protein; hypothetical protein complement(2921280..2921837) Parvibaculum lavamentivorans DS-1 5455062 YP_001413982.1 CDS Plav_2717 NC_009719.1 2921927 2923294 R PFAM: glutamine synthetase catalytic region; KEGG: pau:PA14_72850 putative glutamine synthetase; glutamine synthetase complement(2921927..2923294) Parvibaculum lavamentivorans DS-1 5454206 YP_001413983.1 CDS Plav_2718 NC_009719.1 2923291 2924664 R PFAM: aminotransferase class-III; KEGG: glutamate-1-semialdehyde 2,1-aminomutase; aminotransferase complement(2923291..2924664) Parvibaculum lavamentivorans DS-1 5454996 YP_001413984.1 CDS Plav_2719 NC_009719.1 2924829 2925251 D hypothetical protein 2924829..2925251 Parvibaculum lavamentivorans DS-1 5454985 YP_001413985.1 CDS Plav_2720 NC_009719.1 2925797 2926882 D KEGG: rpc:RPC_3111 hypothetical protein; hypothetical protein 2925797..2926882 Parvibaculum lavamentivorans DS-1 5453570 YP_001413986.1 CDS Plav_2721 NC_009719.1 2926879 2927745 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: mag:amb3149 rRNA methylase; RNA methyltransferase complement(2926879..2927745) Parvibaculum lavamentivorans DS-1 5456371 YP_001413987.1 CDS Plav_2722 NC_009719.1 2928299 2929489 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2928299..2929489 Parvibaculum lavamentivorans DS-1 5453640 YP_001413988.1 CDS Plav_2723 NC_009719.1 2929701 2929901 D TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: bov:BOV_1211 preprotein translocase, SecE subunit; preprotein translocase subunit SecE 2929701..2929901 Parvibaculum lavamentivorans DS-1 5453884 YP_001413989.1 CDS Plav_2724 NC_009719.1 2929936 2930466 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides Ouzounis Woese) domain protein; KEGG: rpd:RPD_3202 transcription termination/antitermination factor NusG; NusG antitermination factor 2929936..2930466 Parvibaculum lavamentivorans DS-1 5454342 YP_001413990.1 CDS rplK NC_009719.1 2930570 2930998 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 2930570..2930998 Parvibaculum lavamentivorans DS-1 5454735 YP_001413991.1 CDS Plav_2726 NC_009719.1 2931004 2931705 D PFAM: ribosomal protein L1; KEGG: mes:Meso_1822 ribosomal protein L1; 50S ribosomal protein L1 2931004..2931705 Parvibaculum lavamentivorans DS-1 5455382 YP_001413992.1 CDS Plav_2727 NC_009719.1 2932083 2932601 D PFAM: ribosomal protein L10; KEGG: bov:BOV_1207 ribosomal protein L10; 50S ribosomal protein L10 2932083..2932601 Parvibaculum lavamentivorans DS-1 5455887 YP_001413993.1 CDS Plav_2728 NC_009719.1 2932650 2933021 D TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: mes:Meso_1820 ribosomal protein L7/L12; 50S ribosomal protein L7/L12 2932650..2933021 Parvibaculum lavamentivorans DS-1 5454980 YP_001413994.1 CDS Plav_2729 NC_009719.1 2933201 2937289 D TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; KEGG: bbt:BBta_5081 RNA polymerase, beta subunit; DNA-directed RNA polymerase subunit beta 2933201..2937289 Parvibaculum lavamentivorans DS-1 5456710 YP_001413995.1 CDS Plav_2730 NC_009719.1 2937459 2941652 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 2937459..2941652 Parvibaculum lavamentivorans DS-1 5456286 YP_001413996.1 CDS rpsL NC_009719.1 2942394 2942765 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 2942394..2942765 Parvibaculum lavamentivorans DS-1 5456251 YP_001413997.1 CDS Plav_2732 NC_009719.1 2942777 2943247 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 2942777..2943247 Parvibaculum lavamentivorans DS-1 5453550 YP_001413998.1 CDS Plav_2733 NC_009719.1 2943278 2945353 D TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: rru:Rru_A2691 translation elongation factor G; translation elongation factor G 2943278..2945353 Parvibaculum lavamentivorans DS-1 5456795 YP_001413999.1 CDS Plav_2734 NC_009719.1 2945395 2946585 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2945395..2946585 Parvibaculum lavamentivorans DS-1 5456799 YP_001414000.1 CDS Plav_2735 NC_009719.1 2946669 2946977 D PFAM: ribosomal protein S10; KEGG: mmr:Mmar10_1796 ribosomal protein S10; 30S ribosomal protein S10 2946669..2946977 Parvibaculum lavamentivorans DS-1 5453789 YP_001414001.1 CDS Plav_2736 NC_009719.1 2947017 2947772 D PFAM: ribosomal protein L3; KEGG: rde:RD1_1399 ribosomal protein L3; 50S ribosomal protein L3 2947017..2947772 Parvibaculum lavamentivorans DS-1 5454013 YP_001414002.1 CDS Plav_2737 NC_009719.1 2947772 2948392 D PFAM: ribosomal protein L4/L1e; KEGG: nwi:Nwi_1365 50S ribosomal protein L4; 50S ribosomal protein L4 2947772..2948392 Parvibaculum lavamentivorans DS-1 5454054 YP_001414003.1 CDS Plav_2738 NC_009719.1 2948389 2948679 D PFAM: Ribosomal protein L25/L23; KEGG: rpd:RPD_3182 ribosomal protein L25/L23; 50S ribosomal protein L25 2948389..2948679 Parvibaculum lavamentivorans DS-1 5453946 YP_001414004.1 CDS rplB NC_009719.1 2948684 2949520 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2948684..2949520 Parvibaculum lavamentivorans DS-1 5455098 YP_001414005.1 CDS Plav_2740 NC_009719.1 2949531 2949809 D TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: rle:RL1778 putative 30S ribosomal protein S19; 30S ribosomal protein S19 2949531..2949809 Parvibaculum lavamentivorans DS-1 5454762 YP_001414006.1 CDS Plav_2741 NC_009719.1 2949813 2950193 D TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: mes:Meso_1673 ribosomal protein L22; 50S ribosomal protein L22 2949813..2950193 Parvibaculum lavamentivorans DS-1 5454224 YP_001414007.1 CDS Plav_2742 NC_009719.1 2950193 2950903 D TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; KEGG: mes:Meso_1672 ribosomal protein S3; 30S ribosomal protein S3 2950193..2950903 Parvibaculum lavamentivorans DS-1 5454717 YP_001414008.1 CDS rplP NC_009719.1 2950937 2951356 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2950937..2951356 Parvibaculum lavamentivorans DS-1 5454268 YP_001414009.1 CDS Plav_2744 NC_009719.1 2951403 2951609 D PFAM: ribosomal protein L29; KEGG: rle:RL1782 putative 50S ribosomal protein L29; 50S ribosomal protein L29 2951403..2951609 Parvibaculum lavamentivorans DS-1 5455205 YP_001414010.1 CDS Plav_2745 NC_009719.1 2951620 2951856 D PFAM: ribosomal protein S17; KEGG: atu:Atu1937 30S ribosomal protein S17; 30S ribosomal protein S17 2951620..2951856 Parvibaculum lavamentivorans DS-1 5454171 YP_001414011.1 CDS rplN NC_009719.1 2951903 2952271 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 2951903..2952271 Parvibaculum lavamentivorans DS-1 5455693 YP_001414012.1 CDS Plav_2747 NC_009719.1 2952271 2952588 D TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW (Kyrpides Ouzounis Woese) domain protein; KEGG: rru:Rru_A2677 ribosomal protein L24; 50S ribosomal protein L24 2952271..2952588 Parvibaculum lavamentivorans DS-1 5456789 YP_001414013.1 CDS Plav_2748 NC_009719.1 2952581 2953138 D PFAM: ribosomal protein L5; KEGG: bhe:BH10390 50S ribosomal protein L5; 50S ribosomal protein L5 2952581..2953138 Parvibaculum lavamentivorans DS-1 5455928 YP_001414014.1 CDS Plav_2749 NC_009719.1 2953181 2953486 D PFAM: ribosomal protein S14; KEGG: hne:HNE_2838 ribosomal protein S14; 30S ribosomal protein S14 2953181..2953486 Parvibaculum lavamentivorans DS-1 5457036 YP_001414015.1 CDS Plav_2750 NC_009719.1 2953498 2953896 D PFAM: ribosomal protein S8; KEGG: bqu:BQ08090 30S ribosomal protein S8; 30S ribosomal protein S8 2953498..2953896 Parvibaculum lavamentivorans DS-1 5456114 YP_001414016.1 CDS Plav_2751 NC_009719.1 2953942 2954475 D PFAM: ribosomal protein L6; KEGG: mes:Meso_1663 ribosomal protein L6; 50S ribosomal protein L6 2953942..2954475 Parvibaculum lavamentivorans DS-1 5456192 YP_001414017.1 CDS Plav_2752 NC_009719.1 2954486 2954842 D TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: mes:Meso_1662 ribosomal protein L18; 50S ribosomal protein L18 2954486..2954842 Parvibaculum lavamentivorans DS-1 5456787 YP_001414018.1 CDS Plav_2753 NC_009719.1 2954855 2955415 D TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: nwi:Nwi_1381 30S ribosomal protein S5; 30S ribosomal protein S5 2954855..2955415 Parvibaculum lavamentivorans DS-1 5456639 YP_001414019.1 CDS Plav_2754 NC_009719.1 2955440 2955646 D PFAM: ribosomal protein L30; KEGG: sme:SMc01291 50S ribosomal protein L30; 50S ribosomal protein L30 2955440..2955646 Parvibaculum lavamentivorans DS-1 5453807 YP_001414020.1 CDS Plav_2755 NC_009719.1 2955682 2956164 D PFAM: ribosomal protein L15; KEGG: swi:Swit_1334 ribosomal protein L15; 50S ribosomal protein L15 2955682..2956164 Parvibaculum lavamentivorans DS-1 5454775 YP_001414021.1 CDS Plav_2756 NC_009719.1 2956222 2957553 D TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: rpa:RPA3230 secretion protein SecY; preprotein translocase subunit SecY 2956222..2957553 Parvibaculum lavamentivorans DS-1 5453371 YP_001414022.1 CDS Plav_2757 NC_009719.1 2957550 2958167 D PFAM: adenylate kinase; KEGG: rpd:RPD_3163 adenylate kinases; adenylate kinase 2957550..2958167 Parvibaculum lavamentivorans DS-1 5456295 YP_001414023.1 CDS Plav_2758 NC_009719.1 2958317 2958685 D PFAM: ribosomal protein S13; KEGG: atc:AGR_C_3520 30S ribosomal protein S13; 30S ribosomal protein S13 2958317..2958685 Parvibaculum lavamentivorans DS-1 5456436 YP_001414024.1 CDS Plav_2759 NC_009719.1 2958752 2959141 D PFAM: ribosomal protein S11; KEGG: mmr:Mmar10_1772 ribosomal protein S11; 30S ribosomal protein S11 2958752..2959141 Parvibaculum lavamentivorans DS-1 5453806 YP_001414025.1 CDS Plav_2760 NC_009719.1 2959238 2960311 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2959238..2960311 Parvibaculum lavamentivorans DS-1 5456892 YP_001414026.1 CDS Plav_2761 NC_009719.1 2960421 2960840 D PFAM: ribosomal protein L17; KEGG: 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17; 50S ribosomal protein L17 2960421..2960840 Parvibaculum lavamentivorans DS-1 5453892 YP_001414027.1 CDS Plav_2762 NC_009719.1 2961039 2962496 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mag:amb3481 trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain; protease Do 2961039..2962496 Parvibaculum lavamentivorans DS-1 5453665 YP_001414028.1 CDS Plav_2763 NC_009719.1 2962693 2963175 R TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: mmr:Mmar10_0048 bacterioferritin; bacterioferritin complement(2962693..2963175) Parvibaculum lavamentivorans DS-1 5454042 YP_001414029.1 CDS Plav_2764 NC_009719.1 2963301 2963507 R hypothetical protein complement(2963301..2963507) Parvibaculum lavamentivorans DS-1 5454009 YP_001414030.1 CDS Plav_2765 NC_009719.1 2963687 2964991 D PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rru:Rru_A2660 AAA ATPase, central region; recombination factor protein RarA 2963687..2964991 Parvibaculum lavamentivorans DS-1 5453420 YP_001414031.1 CDS Plav_2766 NC_009719.1 2964988 2965371 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: mlo:mlr0333 crcB protein; CrcB protein 2964988..2965371 Parvibaculum lavamentivorans DS-1 5454821 YP_001414032.1 CDS Plav_2767 NC_009719.1 2965368 2966360 D TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rru:Rru_A2659 pseudouridine synthase, RluD; RluA family pseudouridine synthase 2965368..2966360 Parvibaculum lavamentivorans DS-1 5453864 YP_001414033.1 CDS Plav_2768 NC_009719.1 2966360 2967073 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rde:RD1_1442 hydrolase, putative; HAD family hydrolase 2966360..2967073 Parvibaculum lavamentivorans DS-1 5455362 YP_001414034.1 CDS Plav_2769 NC_009719.1 2967077 2968840 D PFAM: AsmA family protein; KEGG: pnu:Pnuc_0711 AsmA family protein; AsmA family protein 2967077..2968840 Parvibaculum lavamentivorans DS-1 5454890 YP_001414035.1 CDS Plav_2770 NC_009719.1 2968864 2969679 D PFAM: ATP12 ATPase; KEGG: rsp:RSP_1746 hypothetical protein; ATP12 ATPase 2968864..2969679 Parvibaculum lavamentivorans DS-1 5453460 YP_001414036.1 CDS Plav_2771 NC_009719.1 2969903 2971435 D PFAM: carboxyl transferase; KEGG: mlo:mll0348 propionyl-CoA carboxylase; carboxyl transferase 2969903..2971435 Parvibaculum lavamentivorans DS-1 5456141 YP_001414037.1 CDS Plav_2772 NC_009719.1 2971447 2973462 D PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: mlo:mll0871 propionyl-CoA carboxylase alpha chain precursor; carbamoyl-phosphate synthase L chain ATP-binding 2971447..2973462 Parvibaculum lavamentivorans DS-1 5455771 YP_001414038.1 CDS Plav_2773 NC_009719.1 2973742 2974779 D KEGG: mba:Mbar_A3298 hypothetical protein; hypothetical protein 2973742..2974779 Parvibaculum lavamentivorans DS-1 5455552 YP_001414039.1 CDS Plav_2774 NC_009719.1 2975143 2975820 R TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: bja:blr5257 lipoate biosynthesis protein B; lipoate-protein ligase B complement(2975143..2975820) Parvibaculum lavamentivorans DS-1 5455851 YP_001414040.1 CDS Plav_2775 NC_009719.1 2975885 2976121 D PFAM: surface presentation of antigens (SPOA) protein; KEGG: mmr:Mmar10_1744 surface presentation of antigens (SpoA) protein; surface presentation of antigens (SPOA) protein 2975885..2976121 Parvibaculum lavamentivorans DS-1 5455605 YP_001414041.1 CDS Plav_2776 NC_009719.1 2976301 2976861 D TIGRFAM: siroheme synthase; KEGG: acr:Acry_2803 siroheme synthase; siroheme synthase 2976301..2976861 Parvibaculum lavamentivorans DS-1 5456879 YP_001414042.1 CDS Plav_2777 NC_009719.1 2976924 2977682 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 2976924..2977682 Parvibaculum lavamentivorans DS-1 5455442 YP_001414043.1 CDS Plav_2778 NC_009719.1 2978004 2979389 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: rle:RL2551 putative transmembrane cationic transporter; magnesium transporter 2978004..2979389 Parvibaculum lavamentivorans DS-1 5454771 YP_001414044.1 CDS Plav_2779 NC_009719.1 2979417 2980421 D PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: mmr:Mmar10_1741 Kelch repeat protein; kelch repeat-containing protein 2979417..2980421 Parvibaculum lavamentivorans DS-1 5455533 YP_001414045.1 CDS Plav_2780 NC_009719.1 2980506 2981678 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_6658 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2980506..2981678 Parvibaculum lavamentivorans DS-1 5456010 YP_001414046.1 CDS Plav_2781 NC_009719.1 2981678 2982757 D KEGG: eli:ELI_09820 hypothetical protein; hypothetical protein 2981678..2982757 Parvibaculum lavamentivorans DS-1 5453478 YP_001414047.1 CDS Plav_2782 NC_009719.1 2983376 2984260 R PFAM: phosphoesterase PA-phosphatase related; KEGG: mem:Memar_0499 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(2983376..2984260) Parvibaculum lavamentivorans DS-1 5455136 YP_001414048.1 CDS Plav_2783 NC_009719.1 2984356 2985555 D TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: azo:azo0393 probable acyl-CoA thiolase; acetyl-CoA acetyltransferase 2984356..2985555 Parvibaculum lavamentivorans DS-1 5454682 YP_001414049.1 CDS Plav_2784 NC_009719.1 2985552 2985947 R KEGG: mmr:Mmar10_1416 hypothetical protein; hypothetical protein complement(2985552..2985947) Parvibaculum lavamentivorans DS-1 5456154 YP_001414050.1 CDS Plav_2785 NC_009719.1 2985964 2986554 R PFAM: regulatory protein TetR; KEGG: bra:BRADO3678 putative transcriptional regulatory protein, TetR family; TetR family transcriptional regulator complement(2985964..2986554) Parvibaculum lavamentivorans DS-1 5453528 YP_001414051.1 CDS Plav_2786 NC_009719.1 2986633 2988249 D PFAM: carboxyl transferase; KEGG: mmr:Mmar10_1734 propionyl-CoA carboxylase; propionyl-CoA carboxylase 2986633..2988249 Parvibaculum lavamentivorans DS-1 5454173 YP_001414052.1 CDS Plav_2787 NC_009719.1 2988257 2989063 D hypothetical protein 2988257..2989063 Parvibaculum lavamentivorans DS-1 5453726 YP_001414053.1 CDS Plav_2788 NC_009719.1 2989066 2991087 D PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: gme:Gmet_3292 biotin/lipoyl attachment:carbamoyl-phosphate synthase L chain, ATP-binding:carbamoyl-phosphate synthetase large chain-like:biotin carboxylase-like; carbamoyl-phosphate synthase L chain ATP-binding 2989066..2991087 Parvibaculum lavamentivorans DS-1 5456198 YP_001414054.1 CDS Plav_2789 NC_009719.1 2991084 2991518 D PFAM: conserved hypothetical protein; KEGG: mes:Meso_1368 uncharacterised conserved protein UCP032025; hypothetical protein 2991084..2991518 Parvibaculum lavamentivorans DS-1 5456104 YP_001414055.1 CDS Plav_2790 NC_009719.1 2991590 2992483 D PFAM: peptidase S15; KEGG: mpt:Mpe_A2886 hypothetical protein; peptidase S15 2991590..2992483 Parvibaculum lavamentivorans DS-1 5455497 YP_001414056.1 CDS Plav_2791 NC_009719.1 2992492 2993358 R TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain; PFAM: Pantoate-beta-alanine ligase; KEGG: rru:Rru_A3320 cytidyltransferase-related; pantoate--beta-alanine ligase complement(2992492..2993358) Parvibaculum lavamentivorans DS-1 5453634 YP_001414057.1 CDS Plav_2792 NC_009719.1 2993757 2994935 R PFAM: iron-containing alcohol dehydrogenase; KEGG: hch:HCH_06318 alcohol dehydrogenase, class IV; iron-containing alcohol dehydrogenase complement(2993757..2994935) Parvibaculum lavamentivorans DS-1 5453422 YP_001414058.1 CDS Plav_2793 NC_009719.1 2994932 2996326 R PFAM: aldehyde dehydrogenase; KEGG: acr:Acry_2389 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2994932..2996326) Parvibaculum lavamentivorans DS-1 5453743 YP_001414059.1 CDS Plav_2794 NC_009719.1 2996323 2997690 R PFAM: glutamine synthetase catalytic region; KEGG: mlo:mll3074 glutamine synthetase; glutamate--ammonia ligase complement(2996323..2997690) Parvibaculum lavamentivorans DS-1 5454797 YP_001414060.1 CDS Plav_2795 NC_009719.1 2997911 2998765 D PFAM: ATPase MipZ; KEGG: rsp:RSP_1042 chromosome partitioning protein; ATPase MipZ 2997911..2998765 Parvibaculum lavamentivorans DS-1 5455052 YP_001414061.1 CDS Plav_2796 NC_009719.1 2998762 3000438 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: atc:AGR_C_2773 penicillin-binding protein dacf precursor (dacF); serine-type D-Ala-D-Ala carboxypeptidase complement(2998762..3000438) Parvibaculum lavamentivorans DS-1 5454326 YP_001414062.1 CDS clpS NC_009719.1 3000982 3001314 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 3000982..3001314 Parvibaculum lavamentivorans DS-1 5453682 YP_001414063.1 CDS Plav_2798 NC_009719.1 3001363 3003747 D TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: bra:BRADO4545 ATP-dependent specificity subunit of ClpA-ClpP serine protease; ATP-dependent Clp protease ATP-binding protein ClpA 3001363..3003747 Parvibaculum lavamentivorans DS-1 5456202 YP_001414064.1 CDS Plav_2799 NC_009719.1 3003857 3004222 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nar:Saro_0439 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3003857..3004222 Parvibaculum lavamentivorans DS-1 5454339 YP_001414065.1 CDS Plav_2800 NC_009719.1 3004302 3005918 R PFAM: NHL repeat containing protein; KEGG: rpa:RPA4432 NHL repeat; NHL repeat-containing protein complement(3004302..3005918) Parvibaculum lavamentivorans DS-1 5454852 YP_001414066.1 CDS Plav_2801 NC_009719.1 3005943 3006362 R PFAM: histidine triad (HIT) protein; KEGG: atc:AGR_C_2530 probable hit family protein; histidine triad (HIT) protein complement(3005943..3006362) Parvibaculum lavamentivorans DS-1 5455541 YP_001414067.1 CDS Plav_2802 NC_009719.1 3006365 3007561 R PFAM: protein of unknown function DUF482; KEGG: sme:SMc02105 hypothetical protein; hypothetical protein complement(3006365..3007561) Parvibaculum lavamentivorans DS-1 5453473 YP_001414068.1 CDS Plav_2803 NC_009719.1 3007589 3008056 R PFAM: Endoribonuclease L-PSP; KEGG: rsq:Rsph17025_0250 endoribonuclease L-PSP; endoribonuclease L-PSP complement(3007589..3008056) Parvibaculum lavamentivorans DS-1 5454769 YP_001414069.1 CDS Plav_2804 NC_009719.1 3008150 3009190 D PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: lpn:lpg0005 peptidylarginine deiminase; agmatine deiminase 3008150..3009190 Parvibaculum lavamentivorans DS-1 5454127 YP_001414070.1 CDS Plav_2805 NC_009719.1 3009195 3009905 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mxa:MXAN_5366 response regulator/GGDEF domain protein; diguanylate cyclase complement(3009195..3009905) Parvibaculum lavamentivorans DS-1 5453863 YP_001414071.1 CDS Plav_2806 NC_009719.1 3010100 3010978 R PFAM: protein of unknown function DUF323; KEGG: sde:Sde_3987 RecF protein; hypothetical protein complement(3010100..3010978) Parvibaculum lavamentivorans DS-1 5454153 YP_001414072.1 CDS Plav_2807 NC_009719.1 3010975 3011940 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rru:Rru_A1815 glycolate reductase; glyoxylate reductase complement(3010975..3011940) Parvibaculum lavamentivorans DS-1 5454447 YP_001414073.1 CDS Plav_2808 NC_009719.1 3012027 3012848 D PFAM: Domain of unknown function DUF1849; KEGG: sme:SMc02102 hypothetical protein; hypothetical protein 3012027..3012848 Parvibaculum lavamentivorans DS-1 5453603 YP_001414074.1 CDS Plav_2809 NC_009719.1 3012985 3014256 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(3012985..3014256) Parvibaculum lavamentivorans DS-1 5455102 YP_001414075.1 CDS Plav_2810 NC_009719.1 3014404 3015327 D hypothetical protein 3014404..3015327 Parvibaculum lavamentivorans DS-1 5456440 YP_001414076.1 CDS Plav_2811 NC_009719.1 3015588 3016487 R PFAM: ROK family protein; KEGG: sfu:Sfum_0489 ROK family protein; ROK family protein complement(3015588..3016487) Parvibaculum lavamentivorans DS-1 5454417 YP_001414077.1 CDS Plav_2812 NC_009719.1 3016897 3017655 R KEGG: mlo:mlr0864 hypothetical protein; hypothetical protein complement(3016897..3017655) Parvibaculum lavamentivorans DS-1 5456900 YP_001414078.1 CDS Plav_2813 NC_009719.1 3017652 3017969 R KEGG: rsh:Rsph17029_2068 hypothetical protein; hypothetical protein complement(3017652..3017969) Parvibaculum lavamentivorans DS-1 5455015 YP_001414079.1 CDS Plav_2814 NC_009719.1 3018185 3018559 D PFAM: response regulator receiver; KEGG: polar differentiation response regulator; response regulator receiver protein 3018185..3018559 Parvibaculum lavamentivorans DS-1 5456930 YP_001414080.1 CDS Plav_2815 NC_009719.1 3018603 3019976 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rpb:RPB_2413 diguanylate cyclase; response regulator receiver modulated diguanylate cyclase 3018603..3019976 Parvibaculum lavamentivorans DS-1 5453911 YP_001414081.1 CDS Plav_2816 NC_009719.1 3020445 3020612 R PFAM: ribosomal protein L33; KEGG: mmr:Mmar10_1278 ribosomal protein L33; 50S ribosomal protein L33 complement(3020445..3020612) Parvibaculum lavamentivorans DS-1 5456425 YP_001414082.1 CDS Plav_2817 NC_009719.1 3020705 3021007 R KEGG: nar:Saro_0897 hypothetical protein; hypothetical protein complement(3020705..3021007) Parvibaculum lavamentivorans DS-1 5454829 YP_001414083.1 CDS Plav_2818 NC_009719.1 3021184 3021864 R KEGG: nar:Saro_0897 hypothetical protein; hypothetical protein complement(3021184..3021864) Parvibaculum lavamentivorans DS-1 5454922 YP_001414084.1 CDS Plav_2819 NC_009719.1 3022150 3023199 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sth:STH2403 threonine aldolase; aromatic amino acid beta-eliminating lyase/threonine aldolase complement(3022150..3023199) Parvibaculum lavamentivorans DS-1 5456866 YP_001414085.1 CDS Plav_2820 NC_009719.1 3023254 3023937 D PFAM: regulatory protein TetR; KEGG: hne:HNE_2415 transcriptional regulator, TetR family; TetR family transcriptional regulator 3023254..3023937 Parvibaculum lavamentivorans DS-1 5454913 YP_001414086.1 CDS Plav_2822 NC_009719.1 3025482 3025958 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bbt:BBta_4128 putative transcriptional regulator, AsnC/Lrp family; AsnC family transcriptional regulator complement(3025482..3025958) Parvibaculum lavamentivorans DS-1 5454822 YP_001414087.1 CDS Plav_2823 NC_009719.1 3026102 3026905 D KEGG: rle:pRL120290 hypothetical protein; hypothetical protein 3026102..3026905 Parvibaculum lavamentivorans DS-1 5453549 YP_001414088.1 CDS Plav_2824 NC_009719.1 3026920 3027570 R PFAM: Glutathione S-transferase domain; KEGG: bja:blr6664 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(3026920..3027570) Parvibaculum lavamentivorans DS-1 5454226 YP_001414089.1 CDS Plav_2825 NC_009719.1 3027615 3028856 R PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc01368 putative transport transmembrane protein; major facilitator superfamily transporter complement(3027615..3028856) Parvibaculum lavamentivorans DS-1 5454696 YP_001414090.1 CDS Plav_2826 NC_009719.1 3029021 3029659 R hypothetical protein complement(3029021..3029659) Parvibaculum lavamentivorans DS-1 5454192 YP_001414091.1 CDS Plav_2827 NC_009719.1 3029736 3030413 R PFAM: NUDIX hydrolase; KEGG: pat:Patl_2625 NUDIX hydrolase; NUDIX hydrolase complement(3029736..3030413) Parvibaculum lavamentivorans DS-1 5453820 YP_001414092.1 CDS Plav_2828 NC_009719.1 3030418 3031185 R PFAM: NUDIX hydrolase; KEGG: pat:Patl_2625 NUDIX hydrolase; NUDIX hydrolase complement(3030418..3031185) Parvibaculum lavamentivorans DS-1 5454974 YP_001414093.1 CDS Plav_2829 NC_009719.1 3031281 3031706 R PFAM: protein of unknown function DUF983; KEGG: mes:Meso_1352 protein of unknown function DUF983; hypothetical protein complement(3031281..3031706) Parvibaculum lavamentivorans DS-1 5454412 YP_001414094.1 CDS Plav_2830 NC_009719.1 3031806 3034154 R TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; KEGG: bme:BMEII0665 ribonuclease R; ribonuclease R complement(3031806..3034154) Parvibaculum lavamentivorans DS-1 5455562 YP_001414095.1 CDS Plav_2831 NC_009719.1 3034158 3036842 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(3034158..3036842) Parvibaculum lavamentivorans DS-1 5454642 YP_001414096.1 CDS Plav_2832 NC_009719.1 3037187 3037471 D hypothetical protein 3037187..3037471 Parvibaculum lavamentivorans DS-1 5454998 YP_001414097.1 CDS Plav_2833 NC_009719.1 3037478 3038596 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: mag:amb0681 predicted Rossmann fold nucleotide-binding protein; DNA protecting protein DprA complement(3037478..3038596) Parvibaculum lavamentivorans DS-1 5455763 YP_001414098.1 CDS Plav_2834 NC_009719.1 3038603 3039247 R PFAM: protein of unknown function DUF205; KEGG: rpa:RPA3119 hypothetical protein; hypothetical protein complement(3038603..3039247) Parvibaculum lavamentivorans DS-1 5455813 YP_001414099.1 CDS Plav_2835 NC_009719.1 3039273 3040574 R TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: rpa:RPA3118 dihydroorotase; multifunctional complex type dihydroorotase complement(3039273..3040574) Parvibaculum lavamentivorans DS-1 5455492 YP_001414100.1 CDS Plav_2836 NC_009719.1 3040571 3041635 R TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: bra:BRADO4502 aspartate carbamoyltransferase (catalytic subunit); aspartate carbamoyltransferase complement(3040571..3041635) Parvibaculum lavamentivorans DS-1 5455931 YP_001414101.1 CDS Plav_2837 NC_009719.1 3041667 3043358 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ilo:IL1542 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3041667..3043358 Parvibaculum lavamentivorans DS-1 5455522 YP_001414102.1 CDS Plav_2838 NC_009719.1 3043362 3044204 D KEGG: syx:SynWH7803_0896 hypothetical protein; hypothetical protein 3043362..3044204 Parvibaculum lavamentivorans DS-1 5455476 YP_001414103.1 CDS Plav_2839 NC_009719.1 3044242 3045270 R KEGG: pna:Pnap_2858 insertion element protein; insertion element protein complement(3044242..3045270) Parvibaculum lavamentivorans DS-1 5456876 YP_001414104.1 CDS Plav_2840 NC_009719.1 3045372 3046286 R PFAM: Auxin Efflux Carrier; KEGG: rpe:RPE_3369 auxin efflux carrier; auxin efflux carrier complement(3045372..3046286) Parvibaculum lavamentivorans DS-1 5453944 YP_001414105.1 CDS Plav_2841 NC_009719.1 3046311 3046859 R PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: mag:amb1588 putative Holliday junction resolvase; Holliday junction resolvase YqgF complement(3046311..3046859) Parvibaculum lavamentivorans DS-1 5455491 YP_001414106.1 CDS Plav_2842 NC_009719.1 3046903 3047277 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: hne:HNE_2299 glutamyl-tRNA(Gln) amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 3046903..3047277 Parvibaculum lavamentivorans DS-1 5455520 YP_001414107.1 CDS Plav_2843 NC_009719.1 3047281 3048759 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; KEGG: bme:BMEII0675 glutamyl-tRNA(gln) amidotransferase subunit A; glutamyl-tRNA(Gln) amidotransferase subunit A 3047281..3048759 Parvibaculum lavamentivorans DS-1 5454258 YP_001414108.1 CDS Plav_2844 NC_009719.1 3048756 3050273 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: mes:Meso_1720 glutamyl-tRNA(Gln) amidotransferase, B subunit; glutamyl-tRNA(Gln) amidotransferase subunit B 3048756..3050273 Parvibaculum lavamentivorans DS-1 5454472 YP_001414109.1 CDS Plav_2845 NC_009719.1 3050493 3050969 D KEGG: rme:Rmet_3071 putative histone H1 protein; putative histone H1 protein 3050493..3050969 Parvibaculum lavamentivorans DS-1 5453533 YP_001414110.1 CDS Plav_2846 NC_009719.1 3050979 3051770 D PFAM: Glutathione S-transferase domain; KEGG: sme:SMc02390 putative glutathione S-transferase protein; glutathione S-transferase domain-containing protein 3050979..3051770 Parvibaculum lavamentivorans DS-1 5454519 YP_001414111.1 CDS Plav_2847 NC_009719.1 3051882 3052223 D hypothetical protein 3051882..3052223 Parvibaculum lavamentivorans DS-1 5455639 YP_001414112.1 CDS Plav_2848 NC_009719.1 3052279 3052980 D PFAM: Glutathione S-transferase domain; KEGG: bur:Bcep18194_A5556 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 3052279..3052980 Parvibaculum lavamentivorans DS-1 5453580 YP_001414113.1 CDS Plav_2849 NC_009719.1 3053157 3053426 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: eli:ELI_14115 hypothetical protein; Sel1 domain-containing protein 3053157..3053426 Parvibaculum lavamentivorans DS-1 5454324 YP_001414114.1 CDS Plav_2850 NC_009719.1 3053533 3054423 D TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; KEGG: bme:BMEI0166 acyl-CoA thioesterase II; acyl-CoA thioesterase II 3053533..3054423 Parvibaculum lavamentivorans DS-1 5455178 YP_001414115.1 CDS Plav_2851 NC_009719.1 3054621 3055235 D PFAM: regulatory protein TetR; Resolvase helix-turn-helix domain protein; KEGG: msm:MSMEG_1500 TetR family protein transcriptional regulatory protein; TetR family transcriptional regulator 3054621..3055235 Parvibaculum lavamentivorans DS-1 5454774 YP_001414116.1 CDS Plav_2852 NC_009719.1 3055291 3056184 D PFAM: alpha/beta hydrolase fold; KEGG: mkm:Mkms_3008 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3055291..3056184 Parvibaculum lavamentivorans DS-1 5454409 YP_001414117.1 CDS Plav_2853 NC_009719.1 3056207 3057664 R KEGG: eli:ELI_05180 sugar transporter; sugar transporter complement(3056207..3057664) Parvibaculum lavamentivorans DS-1 5454209 YP_001414118.1 CDS Plav_2854 NC_009719.1 3057810 3058439 D PFAM: protein of unknown function UPF0126; KEGG: pca:Pcar_0604 hypothetical protein; hypothetical protein 3057810..3058439 Parvibaculum lavamentivorans DS-1 5456973 YP_001414119.1 CDS Plav_2855 NC_009719.1 3058659 3059783 D PFAM: MscS Mechanosensitive ion channel; KEGG: bra:BRADO5370 conserved hypothetical protein; putative membrane protein; putative small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 3058659..3059783 Parvibaculum lavamentivorans DS-1 5455070 YP_001414120.1 CDS Plav_2856 NC_009719.1 3060131 3060940 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hha:Hhal_1678 methyltransferase type 12; type 12 methyltransferase 3060131..3060940 Parvibaculum lavamentivorans DS-1 5456867 YP_001414121.1 CDS Plav_2857 NC_009719.1 3060927 3061766 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: hha:Hhal_1677 methyltransferase type 11; type 11 methyltransferase 3060927..3061766 Parvibaculum lavamentivorans DS-1 5453775 YP_001414122.1 CDS Plav_2858 NC_009719.1 3062004 3062714 D KEGG: sde:Sde_3519 hypothetical protein; hypothetical protein 3062004..3062714 Parvibaculum lavamentivorans DS-1 5454978 YP_001414123.1 CDS Plav_2859 NC_009719.1 3062775 3064439 D PFAM: Na+/Picotransporter; KEGG: hne:HNE_1902 Na/Pi cotransporter family protein; Na+/H+ antiporter 3062775..3064439 Parvibaculum lavamentivorans DS-1 5455019 YP_001414124.1 CDS Plav_2860 NC_009719.1 3064441 3065313 R PFAM: alpha/beta hydrolase fold; KEGG: hypothetical protein; alpha/beta hydrolase fold protein complement(3064441..3065313) Parvibaculum lavamentivorans DS-1 5453941 YP_001414125.1 CDS Plav_2861 NC_009719.1 3065392 3067806 R PFAM: Lytic transglycosylase catalytic; KEGG: mmr:Mmar10_1584 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit complement(3065392..3067806) Parvibaculum lavamentivorans DS-1 5455979 YP_001414126.1 CDS Plav_2862 NC_009719.1 3067978 3068853 D TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll5072 dihydrodipicolinate synthase; dihydrodipicolinate synthase 3067978..3068853 Parvibaculum lavamentivorans DS-1 5453919 YP_001414127.1 CDS Plav_2863 NC_009719.1 3068880 3069377 D TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: rpc:RPC_2631 SsrA-binding protein; SsrA-binding protein 3068880..3069377 Parvibaculum lavamentivorans DS-1 5453518 YP_001414128.1 CDS Plav_2864 NC_009719.1 3069374 3070045 R PFAM: Uracil-DNA glycosylase superfamily; KEGG: bja:blr5068 hypothetical protein; uracil-DNA glycosylase superfamily protein complement(3069374..3070045) Parvibaculum lavamentivorans DS-1 5454379 YP_001414129.1 CDS Plav_2865 NC_009719.1 3070057 3070677 R PFAM: protein of unknown function DUF88; KEGG: rru:Rru_A1859 protein of unknown function DUF88; hypothetical protein complement(3070057..3070677) Parvibaculum lavamentivorans DS-1 5454084 YP_001414130.1 CDS Plav_2866 NC_009719.1 3070814 3071377 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: rru:Rru_A1858 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3070814..3071377 Parvibaculum lavamentivorans DS-1 5454958 YP_001414131.1 CDS Plav_2867 NC_009719.1 3071481 3071906 D TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: rpe:RPE_3027 DNA-directed RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega 3071481..3071906 Parvibaculum lavamentivorans DS-1 5453356 YP_001414132.1 CDS Plav_2868 NC_009719.1 3072054 3074213 D KEGG: mag:amb2253 guanosine polyphosphate pyrophosphohydrolase/synthetase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 3072054..3074213 Parvibaculum lavamentivorans DS-1 5454628 YP_001414133.1 CDS pyrE NC_009719.1 3074249 3074833 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3074249..3074833 Parvibaculum lavamentivorans DS-1 5455981 YP_001414134.1 CDS Plav_2870 NC_009719.1 3074846 3075472 D KEGG: mes:Meso_0947 hypothetical protein; hypothetical protein 3074846..3075472 Parvibaculum lavamentivorans DS-1 5454389 YP_001414135.1 CDS Plav_2871 NC_009719.1 3075469 3076266 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 3075469..3076266 Parvibaculum lavamentivorans DS-1 5453484 YP_001414136.1 CDS Plav_2872 NC_009719.1 3076263 3076664 D TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: sme:SMc02654 probable holo-acyl-carrier protein synthase; holo-(acyl-carrier-protein) synthase 3076263..3076664 Parvibaculum lavamentivorans DS-1 5454208 YP_001414137.1 CDS Plav_2873 NC_009719.1 3076730 3077509 D TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: nha:Nham_2252 peptidase S26A, signal peptidase I; signal peptidase I 3076730..3077509 Parvibaculum lavamentivorans DS-1 5455034 YP_001414138.1 CDS Plav_2874 NC_009719.1 3077497 3078177 D PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: rru:Rru_A1852 ribonuclease III; ribonuclease III 3077497..3078177 Parvibaculum lavamentivorans DS-1 5454828 YP_001414139.1 CDS Plav_2875 NC_009719.1 3078218 3079174 D TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; KEGG: sme:SMc02651 probable GTP-binding protein; GTP-binding protein Era 3078218..3079174 Parvibaculum lavamentivorans DS-1 5454414 YP_001414140.1 CDS Plav_2876 NC_009719.1 3079286 3079990 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: mmr:Mmar10_1568 DNA repair protein RecO; DNA repair protein RecO 3079286..3079990 Parvibaculum lavamentivorans DS-1 5453780 YP_001414141.1 CDS Plav_2877 NC_009719.1 3080176 3082422 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3080176..3082422 Parvibaculum lavamentivorans DS-1 5454083 YP_001414142.1 CDS Plav_2878 NC_009719.1 3082582 3082869 D PFAM: Excinuclease ABC C subunit domain protein; KEGG: rpe:RPE_1698 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C 3082582..3082869 Parvibaculum lavamentivorans DS-1 5453439 YP_001414143.1 CDS Plav_2879 NC_009719.1 3082952 3083443 R hypothetical protein complement(3082952..3083443) Parvibaculum lavamentivorans DS-1 5454518 YP_001414144.1 CDS Plav_2880 NC_009719.1 3083449 3085023 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mmr:Mmar10_1562 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(3083449..3085023) Parvibaculum lavamentivorans DS-1 5454632 YP_001414145.1 CDS Plav_2881 NC_009719.1 3085034 3085573 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mgm:Mmc1_1612 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(3085034..3085573) Parvibaculum lavamentivorans DS-1 5454953 YP_001414146.1 CDS Plav_2882 NC_009719.1 3085588 3086661 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hne:HNE_0892 bacterial extracellular solute-binding protein, family 7; TRAP C4-dicarboxylate transport system permease subunit DctP complement(3085588..3086661) Parvibaculum lavamentivorans DS-1 5453444 YP_001414147.1 CDS Plav_2883 NC_009719.1 3086780 3087505 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(3086780..3087505) Parvibaculum lavamentivorans DS-1 5453991 YP_001414148.1 CDS Plav_2884 NC_009719.1 3087538 3089397 R PFAM: Citrate transporter; TrkA-C domain protein; KEGG: mmr:Mmar10_1558 TrkA-C domain protein; TrkA domain-containing protein complement(3087538..3089397) Parvibaculum lavamentivorans DS-1 5454307 YP_001414149.1 CDS Plav_2885 NC_009719.1 3089496 3090023 R PFAM: RDD domain containing protein; KEGG: nwi:Nwi_1910 hypothetical protein; RDD domain-containing protein complement(3089496..3090023) Parvibaculum lavamentivorans DS-1 5455778 YP_001414150.1 CDS Plav_2886 NC_009719.1 3090055 3090951 R PFAM: OmpA/MotB domain protein; KEGG: chemotaxis MotB protein; K02557 chemotaxis MotB protein; OmpA/MotB domain-containing protein complement(3090055..3090951) Parvibaculum lavamentivorans DS-1 5453355 YP_001414151.1 CDS Plav_2887 NC_009719.1 3090967 3091905 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: rru:Rru_A1842 MotA, chemotaxis (motility protein A; MotA/TolQ/ExbB proton channel complement(3090967..3091905) Parvibaculum lavamentivorans DS-1 5454960 YP_001414152.1 CDS Plav_2888 NC_009719.1 3092104 3092622 D PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN3104 P-hydroxyphenylacetate hydroxylase C1:reductase component; flavin reductase domain-containing protein 3092104..3092622 Parvibaculum lavamentivorans DS-1 5454861 YP_001414153.1 CDS Plav_2889 NC_009719.1 3092629 3093132 R PFAM: regulatory protein MarR; KEGG: mlo:mlr8230 transcriptional regulator; MarR family transcriptional regulator complement(3092629..3093132) Parvibaculum lavamentivorans DS-1 5455075 YP_001414154.1 CDS Plav_2890 NC_009719.1 3093386 3094159 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1848 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3093386..3094159 Parvibaculum lavamentivorans DS-1 5454830 YP_001414155.1 CDS Plav_2891 NC_009719.1 3094181 3094588 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hha:Hhal_0453 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 3094181..3094588 Parvibaculum lavamentivorans DS-1 5454405 YP_001414156.1 CDS Plav_2892 NC_009719.1 3094585 3094989 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hha:Hhal_0452 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 3094585..3094989 Parvibaculum lavamentivorans DS-1 5453376 YP_001414157.1 CDS Plav_2893 NC_009719.1 3094986 3095840 D KEGG: rso:RSc1963 probable tonb transmembrane protein; hypothetical protein 3094986..3095840 Parvibaculum lavamentivorans DS-1 5455313 YP_001414158.1 CDS Plav_2894 NC_009719.1 3095961 3096830 D PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rpa:RPA1973 3-hydroxyisobutyrate dehydrogenase; 6-phosphogluconate dehydrogenase 3095961..3096830 Parvibaculum lavamentivorans DS-1 5456703 YP_001414159.1 CDS Plav_2895 NC_009719.1 3096827 3097975 D PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mag:amb1101 diaminopimelate decarboxylase; Orn/DAP/Arg decarboxylase 2 3096827..3097975 Parvibaculum lavamentivorans DS-1 5456599 YP_001414160.1 CDS Plav_2896 NC_009719.1 3098084 3098536 D PFAM: regulatory protein TetR; KEGG: sco:SCO4898 TetR-family transcriptional regulator; TetR family transcriptional regulator 3098084..3098536 Parvibaculum lavamentivorans DS-1 5457006 YP_001414161.1 CDS Plav_2897 NC_009719.1 3098526 3099533 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(3098526..3099533) Parvibaculum lavamentivorans DS-1 5456600 YP_001414162.1 CDS Plav_2898 NC_009719.1 3099701 3100840 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rpb:RPB_2120 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3099701..3100840 Parvibaculum lavamentivorans DS-1 5456465 YP_001414163.1 CDS Plav_2899 NC_009719.1 3100842 3101882 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xtr:548942 hypothetical protein LOC548942 Pfam: ECH; enoyl-CoA hydratase/isomerase 3100842..3101882 Parvibaculum lavamentivorans DS-1 5455384 YP_001414164.1 CDS Plav_2900 NC_009719.1 3101902 3102792 D TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mag:amb3587 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 3101902..3102792 Parvibaculum lavamentivorans DS-1 5455259 YP_001414165.1 CDS Plav_2901 NC_009719.1 3102931 3103443 D PFAM: regulatory protein MarR; KEGG: bbt:BBta_4653 putative transcriptional regulatory protein, MarR family; MarR family transcriptional regulator 3102931..3103443 Parvibaculum lavamentivorans DS-1 5454349 YP_001414166.1 CDS Plav_2902 NC_009719.1 3103465 3104259 R PFAM: protein of unknown function DUF1295; KEGG: sal:Sala_1034 protein of unknown function DUF1295; hypothetical protein complement(3103465..3104259) Parvibaculum lavamentivorans DS-1 5453667 YP_001414167.1 CDS Plav_2903 NC_009719.1 3104534 3105733 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mes:Meso_1133 twin-arginine translocation pathway signal; peptidoglycan-binding domain-containing protein 3104534..3105733 Parvibaculum lavamentivorans DS-1 5453593 YP_001414168.1 CDS Plav_2904 NC_009719.1 3105766 3106542 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sco:SCO1419 putative phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3105766..3106542 Parvibaculum lavamentivorans DS-1 5454018 YP_001414169.1 CDS Plav_2905 NC_009719.1 3106676 3107902 D catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 3106676..3107902 Parvibaculum lavamentivorans DS-1 5453489 YP_001414170.1 CDS Plav_2906 NC_009719.1 3107892 3108188 D KEGG: mag:amb2560 hypothetical protein; hypothetical protein 3107892..3108188 Parvibaculum lavamentivorans DS-1 5453559 YP_001414171.1 CDS Plav_2907 NC_009719.1 3108206 3108712 R PFAM: ROSMUCR transcriptional regulator; KEGG: mlo:mlr1025 transcriptional regulatory protein, nodulation competitiveness determinant; MucR family transcriptional regulator complement(3108206..3108712) Parvibaculum lavamentivorans DS-1 5454341 YP_001414172.1 CDS glyA NC_009719.1 3109174 3110490 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3109174..3110490 Parvibaculum lavamentivorans DS-1 5454492 YP_001414173.1 CDS Plav_2909 NC_009719.1 3110537 3111025 D PFAM: ATP-cone domain protein; KEGG: mlo:mlr8403 ATP-cone domain protein; ATP-cone domain-containing protein 3110537..3111025 Parvibaculum lavamentivorans DS-1 5454498 YP_001414174.1 CDS Plav_2910 NC_009719.1 3111080 3112198 D TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: mag:amb2341 riboflavin biosynthesis protein RibD; riboflavin biosynthesis protein RibD 3111080..3112198 Parvibaculum lavamentivorans DS-1 5455697 YP_001414175.1 CDS Plav_2911 NC_009719.1 3112203 3112829 D TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: jan:Jann_3417 riboflavin synthase, alpha subunit; riboflavin synthase subunit alpha 3112203..3112829 Parvibaculum lavamentivorans DS-1 5455657 YP_001414176.1 CDS Plav_2912 NC_009719.1 3112835 3113983 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: mmr:Mmar10_1533 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3112835..3113983 Parvibaculum lavamentivorans DS-1 5456796 YP_001414177.1 CDS Plav_2913 NC_009719.1 3113980 3114435 D TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; KEGG: ret:RHE_CH01525 riboflavin synthase, beta chain protein; 6,7-dimethyl-8-ribityllumazine synthase 3113980..3114435 Parvibaculum lavamentivorans DS-1 5456711 YP_001414178.1 CDS Plav_2914 NC_009719.1 3114459 3114974 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: rpc:RPC_2664 NusB antitermination factor; NusB antitermination factor 3114459..3114974 Parvibaculum lavamentivorans DS-1 5456805 YP_001414179.1 CDS Plav_2915 NC_009719.1 3114952 3115968 D TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; KEGG: rpc:RPC_2665 thiamine-monophosphate kinase; thiamine-monophosphate kinase 3114952..3115968 Parvibaculum lavamentivorans DS-1 5456797 YP_001414180.1 CDS hppA NC_009719.1 3116133 3118247 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 3116133..3118247 Parvibaculum lavamentivorans DS-1 5456824 YP_001414181.1 CDS Plav_2917 NC_009719.1 3118385 3120070 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: hch:HCH_06854 Kef-type K+ transport system, predicted NAD-binding component; sodium/hydrogen exchanger 3118385..3120070 Parvibaculum lavamentivorans DS-1 5456748 YP_001414182.1 CDS Plav_2918 NC_009719.1 3120103 3120996 D PFAM: UspA domain protein; KEGG: pau:PA14_56590 putative universal stress protein; UspA domain-containing protein 3120103..3120996 Parvibaculum lavamentivorans DS-1 5455913 YP_001414183.1 CDS Plav_2919 NC_009719.1 3121049 3121552 R PFAM: SmpA/OmlA domain protein; KEGG: nwi:Nwi_1403 SmpA/OmlA; SmpA/OmlA domain-containing protein complement(3121049..3121552) Parvibaculum lavamentivorans DS-1 5456841 YP_001414184.1 CDS Plav_2920 NC_009719.1 3121672 3122253 D PFAM: Ubiquinol-cytochrome C chaperone; KEGG: mag:amb2350 CBP3 protein, mitochondrial precursor; ubiquinol-cytochrome C chaperone 3121672..3122253 Parvibaculum lavamentivorans DS-1 5456825 YP_001414185.1 CDS Plav_2921 NC_009719.1 3122250 3122807 D KEGG: rru:Rru_A1664 conserved hypothetical cytosolic protein; hypothetical protein 3122250..3122807 Parvibaculum lavamentivorans DS-1 5456755 YP_001414186.1 CDS Plav_2922 NC_009719.1 3122919 3124004 D TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: nha:Nham_1585 fatty acid/phospholipid synthesis protein PlsX; fatty acid/phospholipid synthesis protein PlsX 3122919..3124004 Parvibaculum lavamentivorans DS-1 5456832 YP_001414187.1 CDS Plav_2923 NC_009719.1 3124001 3124978 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: nha:Nham_1586 3-oxoacyl-(acyl-carrier-protein) synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 3124001..3124978 Parvibaculum lavamentivorans DS-1 5456994 YP_001414188.1 CDS Plav_2924 NC_009719.1 3125116 3125433 D TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: rru:Rru_A1668 integration host factor, alpha subunit; integration host factor subunit alpha 3125116..3125433 Parvibaculum lavamentivorans DS-1 5456727 YP_001414189.1 CDS Plav_2925 NC_009719.1 3125507 3125974 D PFAM: regulatory protein MerR; KEGG: mes:Meso_1148 transcriptional regulator, MerR family; MerR family transcriptional regulator 3125507..3125974 Parvibaculum lavamentivorans DS-1 5455949 YP_001414190.1 CDS Plav_2926 NC_009719.1 3126372 3126587 R KEGG: nha:Nham_2461 hypothetical protein; hypothetical protein complement(3126372..3126587) Parvibaculum lavamentivorans DS-1 5455938 YP_001414191.1 CDS Plav_2927 NC_009719.1 3126716 3127750 D PFAM: cytochrome oxidase assembly; KEGG: neu:NE0431 cytochrome oxidase assembly; cytochrome oxidase assembly 3126716..3127750 Parvibaculum lavamentivorans DS-1 5455659 YP_001414192.1 CDS Plav_2928 NC_009719.1 3128152 3128796 D KEGG: rrs:RoseRS_0296 hypothetical protein; hypothetical protein 3128152..3128796 Parvibaculum lavamentivorans DS-1 5455875 YP_001414193.1 CDS Plav_2929 NC_009719.1 3128796 3129833 D PFAM: Appr-1-p processing domain protein; KEGG: aav:Aave_0161 Appr-1-p processing domain protein; appr-1-p processing domain-containing protein 3128796..3129833 Parvibaculum lavamentivorans DS-1 5455629 YP_001414194.1 CDS Plav_2930 NC_009719.1 3130120 3130773 R PFAM: Glutathione S-transferase domain; KEGG: mxa:MXAN_4035 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein complement(3130120..3130773) Parvibaculum lavamentivorans DS-1 5455396 YP_001414195.1 CDS Plav_2931 NC_009719.1 3130780 3131277 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bja:bll5290 hypothetical protein; activator of Hsp90 ATPase 1 family protein complement(3130780..3131277) Parvibaculum lavamentivorans DS-1 5456747 YP_001414196.1 CDS Plav_2932 NC_009719.1 3131280 3131615 R PFAM: regulatory protein ArsR; KEGG: bja:bll5291 transcriptional regulatory protein; regulatory protein ArsR complement(3131280..3131615) Parvibaculum lavamentivorans DS-1 5456630 YP_001414197.1 CDS Plav_2933 NC_009719.1 3132057 3133331 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(3132057..3133331) Parvibaculum lavamentivorans DS-1 5456542 YP_001414198.1 CDS Plav_2934 NC_009719.1 3133532 3133951 R PFAM: CoA-binding domain protein; KEGG: swi:Swit_2358 CoA-binding domain protein; CoA-binding domain-containing protein complement(3133532..3133951) Parvibaculum lavamentivorans DS-1 5456581 YP_001414199.1 CDS Plav_2935 NC_009719.1 3133948 3134769 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbt:BBta_4594 putative enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(3133948..3134769) Parvibaculum lavamentivorans DS-1 5456175 YP_001414200.1 CDS Plav_2936 NC_009719.1 3134896 3135333 D PFAM: thioesterase superfamily protein; KEGG: bov:BOV_0788 hypothetical protein; thioesterase superfamily protein 3134896..3135333 Parvibaculum lavamentivorans DS-1 5456249 YP_001414201.1 CDS rplM NC_009719.1 3135530 3136093 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3135530..3136093 Parvibaculum lavamentivorans DS-1 5455926 YP_001414202.1 CDS Plav_2938 NC_009719.1 3136096 3136584 D PFAM: ribosomal protein S9; KEGG: mlo:mll8456 30S ribosomal protein S9; 30S ribosomal protein S9 3136096..3136584 Parvibaculum lavamentivorans DS-1 5456028 YP_001414203.1 CDS Plav_2939 NC_009719.1 3136730 3137683 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 3136730..3137683 Parvibaculum lavamentivorans DS-1 5456044 YP_001414204.1 CDS Plav_2940 NC_009719.1 3137847 3138689 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: rru:Rru_A3577 protein of unknown function DUF6, transmembrane; hypothetical protein complement(3137847..3138689) Parvibaculum lavamentivorans DS-1 5456768 YP_001414205.1 CDS Plav_2941 NC_009719.1 3138901 3139185 D PFAM: plasmid maintenance system killer; KEGG: rpc:RPC_4369 plasmid maintenance system killer; plasmid maintenance system killer protein 3138901..3139185 Parvibaculum lavamentivorans DS-1 5456066 YP_001414206.1 CDS Plav_2942 NC_009719.1 3139157 3139471 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_4370 plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein 3139157..3139471 Parvibaculum lavamentivorans DS-1 5456036 YP_001414207.1 CDS Plav_2943 NC_009719.1 3139547 3141541 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: acr:Acry_1301 poly(R)-hydroxyalkanoic acid synthase, class I; poly(R)-hydroxyalkanoic acid synthase complement(3139547..3141541) Parvibaculum lavamentivorans DS-1 5455833 YP_001414208.1 CDS Plav_2944 NC_009719.1 3141717 3142328 D KEGG: cel:ZK84.1 ZK84.1; hypothetical protein 3141717..3142328 Parvibaculum lavamentivorans DS-1 5456308 YP_001414209.1 CDS Plav_2945 NC_009719.1 3142465 3143742 D PFAM: aminotransferase class I and II; KEGG: sme:SMc00294 probable aminotransferase protein; class I/II aminotransferase 3142465..3143742 Parvibaculum lavamentivorans DS-1 5456074 YP_001414210.1 CDS Plav_2946 NC_009719.1 3143739 3145055 D PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: gbe:GbCGDNIH1_1434 putative aminotransferase AatC; homoserine dehydrogenase 3143739..3145055 Parvibaculum lavamentivorans DS-1 5456745 YP_001414211.1 CDS glpX NC_009719.1 3145082 3146056 D type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 3145082..3146056 Parvibaculum lavamentivorans DS-1 5456489 YP_001414212.1 CDS Plav_2948 NC_009719.1 3146084 3147895 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: mag:amb3730 single-stranded DNA-specific exonuclease; single-stranded-DNA-specific exonuclease RecJ 3146084..3147895 Parvibaculum lavamentivorans DS-1 5456719 YP_001414213.1 CDS Plav_2949 NC_009719.1 3148335 3148718 D hypothetical protein 3148335..3148718 Parvibaculum lavamentivorans DS-1 5456709 YP_001414214.1 CDS Plav_2950 NC_009719.1 3148923 3149702 R KEGG: rpd:RPD_1872 sensor histidine kinase; hypothetical protein complement(3148923..3149702) Parvibaculum lavamentivorans DS-1 5456340 YP_001414215.1 CDS Plav_2951 NC_009719.1 3149869 3150288 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hha:Hhal_0152 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3149869..3150288) Parvibaculum lavamentivorans DS-1 5456691 YP_001414216.1 CDS Plav_2952 NC_009719.1 3150305 3151099 D PFAM: Silent information regulator protein Sir2; KEGG: bbt:BBta_4037 putative transciptional regulatory Sir2-family protein; silent information regulator protein Sir2 3150305..3151099 Parvibaculum lavamentivorans DS-1 5456725 YP_001414217.1 CDS Plav_2953 NC_009719.1 3151110 3151844 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_0087 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3151110..3151844) Parvibaculum lavamentivorans DS-1 5456717 YP_001414218.1 CDS Plav_2954 NC_009719.1 3151901 3153550 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mlo:mlr7593 glycosyl hydrolase; alpha amylase 3151901..3153550 Parvibaculum lavamentivorans DS-1 5456733 YP_001414219.1 CDS Plav_2955 NC_009719.1 3153553 3155172 R PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; molybdopterin binding domain; KEGG: rpa:RPA3797 hypothetical protein; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase complement(3153553..3155172) Parvibaculum lavamentivorans DS-1 5456742 YP_001414220.1 CDS Plav_2956 NC_009719.1 3155169 3155846 R KEGG: rsq:Rsph17025_0331 protein of unknown function DUF182; hypothetical protein complement(3155169..3155846) Parvibaculum lavamentivorans DS-1 5456619 YP_001414221.1 CDS Plav_2957 NC_009719.1 3155848 3156183 R PFAM: protein of unknown function DUF182; KEGG: rpe:RPE_1659 protein of unknown function DUF182; hypothetical protein complement(3155848..3156183) Parvibaculum lavamentivorans DS-1 5456667 YP_001414222.1 CDS Plav_2958 NC_009719.1 3156180 3157391 R PFAM: VWA containing CoxE family protein; KEGG: mes:Meso_1291 VWA containing CoxE-like; VWA containing CoxE family protein complement(3156180..3157391) Parvibaculum lavamentivorans DS-1 5456068 YP_001414223.1 CDS Plav_2959 NC_009719.1 3157391 3158302 R PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rru:Rru_A0968 ATPase associated with various cellular activities, AAA_5; ATPase complement(3157391..3158302) Parvibaculum lavamentivorans DS-1 5456655 YP_001414224.1 CDS Plav_2960 NC_009719.1 3158340 3159137 R PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: mlo:mll1127 carbon monoxide dehydrogenase chain C; molybdopterin dehydrogenase FAD-binding complement(3158340..3159137) Parvibaculum lavamentivorans DS-1 5456631 YP_001414225.1 CDS Plav_2961 NC_009719.1 3159149 3161530 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mes:Meso_0059 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase complement(3159149..3161530) Parvibaculum lavamentivorans DS-1 5456186 YP_001414226.1 CDS Plav_2962 NC_009719.1 3161568 3162032 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mes:Meso_0058 (2Fe-2S)-binding; 2Fe-2S iron-sulfur cluster-binding domain-containing protein complement(3161568..3162032) Parvibaculum lavamentivorans DS-1 5456662 YP_001414227.1 CDS Plav_2963 NC_009719.1 3162132 3162782 R PFAM: carbon monoxide dehydrogenase subunit G; KEGG: acr:Acry_0470 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G complement(3162132..3162782) Parvibaculum lavamentivorans DS-1 5456607 YP_001414228.1 CDS Plav_2964 NC_009719.1 3162828 3164522 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D complement(3162828..3164522) Parvibaculum lavamentivorans DS-1 5456200 YP_001414229.1 CDS Plav_2965 NC_009719.1 3164515 3164862 R hypothetical protein complement(3164515..3164862) Parvibaculum lavamentivorans DS-1 5456403 YP_001414230.1 CDS Plav_2966 NC_009719.1 3164859 3166364 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rba:RB1430 putative NADH-ubiquinone oxidoreductase subunit; NADH dehydrogenase (quinone) complement(3164859..3166364) Parvibaculum lavamentivorans DS-1 5456594 YP_001414231.1 CDS Plav_2967 NC_009719.1 3166375 3167880 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(3166375..3167880) Parvibaculum lavamentivorans DS-1 5456644 YP_001414232.1 CDS Plav_2968 NC_009719.1 3167880 3168299 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: rru:Rru_A1636 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L complement(3167880..3168299) Parvibaculum lavamentivorans DS-1 5455947 YP_001414233.1 CDS Plav_2969 NC_009719.1 3168299 3168736 R PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: rru:Rru_A1637 Na+/H+ antiporter MnhB subunit-related protein; Na+/H+ antiporter MnhB subunit-like protein complement(3168299..3168736) Parvibaculum lavamentivorans DS-1 5456984 YP_001414234.1 CDS Plav_2970 NC_009719.1 3168739 3169311 R KEGG: rru:Rru_A1638 putative multicomponent Na+-H+ antiporter subunit A; putative multicomponent Na+-H+ antiporter subunit A complement(3168739..3169311) Parvibaculum lavamentivorans DS-1 5456954 YP_001414235.1 CDS Plav_2971 NC_009719.1 3169308 3169682 R TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: mmr:Mmar10_0886 monovalent cation/proton antiporter, MnhG/PhaG subunit; monovalent cation/proton antiporter subunit MnhG/PhaG complement(3169308..3169682) Parvibaculum lavamentivorans DS-1 5456585 YP_001414236.1 CDS Plav_2972 NC_009719.1 3169682 3169969 R PFAM: multiple resistance and pH regulation protein F; KEGG: rru:Rru_A1640 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F complement(3169682..3169969) Parvibaculum lavamentivorans DS-1 5456650 YP_001414237.1 CDS Plav_2973 NC_009719.1 3169971 3170444 R PFAM: cation antiporter; KEGG: mmr:Mmar10_0884 cation antiporter; cation antiporter complement(3169971..3170444) Parvibaculum lavamentivorans DS-1 5456564 YP_001414238.1 CDS Plav_2974 NC_009719.1 3170737 3171336 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rpe:RPE_2918 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 3170737..3171336 Parvibaculum lavamentivorans DS-1 5456596 YP_001414239.1 CDS Plav_2975 NC_009719.1 3171394 3171855 D PFAM: thioesterase superfamily protein; KEGG: hne:HNE_1964 thioesterase family protein; thioesterase superfamily protein 3171394..3171855 Parvibaculum lavamentivorans DS-1 5456231 YP_001414240.1 CDS Plav_2976 NC_009719.1 3172153 3172809 D PFAM: ETC complex I subunit conserved region; KEGG: NADH-ubiquinone oxidoreductase-related protein; ETC complex I subunit 3172153..3172809 Parvibaculum lavamentivorans DS-1 5456570 YP_001414241.1 CDS Plav_2977 NC_009719.1 3172901 3175438 R TIGRFAM: DNA ligase D; DNA ligase D 3'-phosphoesterase domain; DNA polymerase LigD polymerase domain; DNA polymerase LigD ligase region; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: sme:SMc03959 hypothetical protein; DNA ligase D complement(3172901..3175438) Parvibaculum lavamentivorans DS-1 5455910 YP_001414242.1 CDS Plav_2978 NC_009719.1 3175445 3176368 R TIGRFAM: Ku family containing protein; PFAM: Ku domain protein; KEGG: swi:Swit_3981 Ku family containing protein; Ku domain-containing protein complement(3175445..3176368) Parvibaculum lavamentivorans DS-1 5456549 YP_001414243.1 CDS Plav_2979 NC_009719.1 3176470 3176892 D PFAM: transport-associated; KEGG: sme:SMb20225 probable osmotically inducible sensory protein; transport-associated protein 3176470..3176892 Parvibaculum lavamentivorans DS-1 5456385 YP_001414244.1 CDS Plav_2980 NC_009719.1 3177023 3177787 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: noc:Noc_2705 Sel1-like repeat protein; Sel1 domain-containing protein 3177023..3177787 Parvibaculum lavamentivorans DS-1 5456475 YP_001414245.1 CDS Plav_2981 NC_009719.1 3177869 3179191 D TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; D-arabinono-14-lactone oxidase; KEGG: bur:Bcep18194_B3008 FAD-linked oxidoreductase; FAD-linked oxidoreductase 3177869..3179191 Parvibaculum lavamentivorans DS-1 5456540 YP_001414246.1 CDS Plav_2982 NC_009719.1 3179195 3179419 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sil:SPO2542 biotin/lipoate binding domain protein; biotin/lipoyl attachment domain-containing protein complement(3179195..3179419) Parvibaculum lavamentivorans DS-1 5456535 YP_001414247.1 CDS Plav_2983 NC_009719.1 3179477 3180634 R TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mag:amb1294 cystathionine beta-lyase/cystathionine gamma-synthase; cystathionine beta-lyase complement(3179477..3180634) Parvibaculum lavamentivorans DS-1 5456042 YP_001414248.1 CDS Plav_2984 NC_009719.1 3180834 3181937 D SMART: extracellular solute-binding protein family 3; KEGG: bbt:BBta_3923 putative amino-acid ABC transporter, substrate-binding protein; extracellular solute-binding protein 3180834..3181937 Parvibaculum lavamentivorans DS-1 5456437 YP_001414249.1 CDS Plav_2985 NC_009719.1 3181941 3183143 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A1003 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3181941..3183143 Parvibaculum lavamentivorans DS-1 5456418 YP_001414250.1 CDS Plav_2986 NC_009719.1 3183148 3184257 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_1257 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 3183148..3184257 Parvibaculum lavamentivorans DS-1 5456486 YP_001414251.1 CDS Plav_2987 NC_009719.1 3184267 3185040 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_1116 ABC transporter related; ABC transporter-like protein 3184267..3185040 Parvibaculum lavamentivorans DS-1 5456446 YP_001414252.1 CDS Plav_2988 NC_009719.1 3185043 3185561 R PFAM: GCN5-related N-acetyltransferase; KEGG: bov:BOV_1021 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3185043..3185561) Parvibaculum lavamentivorans DS-1 5456964 YP_001414253.1 CDS Plav_2989 NC_009719.1 3185575 3186420 R PFAM: Rhodanese domain protein; KEGG: rsq:Rsph17025_0122 rhodanese domain protein; rhodanese domain-containing protein complement(3185575..3186420) Parvibaculum lavamentivorans DS-1 5456426 YP_001414254.1 CDS Plav_2990 NC_009719.1 3186444 3187442 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rpa:RPA2568 O-acetylserine (thiol) lyase; pyridoxal-5'-phosphate-dependent protein subunit beta complement(3186444..3187442) Parvibaculum lavamentivorans DS-1 5456039 YP_001414255.1 CDS Plav_2991 NC_009719.1 3187560 3188174 R PFAM: NUDIX hydrolase; KEGG: ent:Ent638_3447 ADP-ribose diphosphatase; NUDIX hydrolase complement(3187560..3188174) Parvibaculum lavamentivorans DS-1 5456456 YP_001414256.1 CDS Plav_2992 NC_009719.1 3188218 3189483 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rle:RL1982 putative cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(3188218..3189483) Parvibaculum lavamentivorans DS-1 5456392 YP_001414257.1 CDS Plav_2993 NC_009719.1 3189590 3191491 D TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sme:SMc01566 probable ATP-dependent DNA helicase protein; ATP-dependent DNA helicase RecQ 3189590..3191491 Parvibaculum lavamentivorans DS-1 5456438 YP_001414258.1 CDS Plav_2994 NC_009719.1 3192029 3193117 R PFAM: polysaccharide deacetylase; KEGG: bja:bll1083 hypothetical protein; polysaccharide deacetylase complement(3192029..3193117) Parvibaculum lavamentivorans DS-1 5456432 YP_001414259.1 CDS Plav_2995 NC_009719.1 3193236 3194549 D KEGG: nha:Nham_2462 hypothetical protein; hypothetical protein 3193236..3194549 Parvibaculum lavamentivorans DS-1 5456413 YP_001414260.1 CDS Plav_2996 NC_009719.1 3194561 3195940 D PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: atc:AGR_L_2615 hypothetical protein; polysaccharide biosynthesis protein 3194561..3195940 Parvibaculum lavamentivorans DS-1 5456397 YP_001414261.1 CDS Plav_2997 NC_009719.1 3195951 3197243 D KEGG: eli:ELI_02565 hypothetical protein; hypothetical protein 3195951..3197243 Parvibaculum lavamentivorans DS-1 5456372 YP_001414262.1 CDS Plav_2998 NC_009719.1 3197227 3198138 D KEGG: nha:Nham_1520 transcription factor jumonji/aspartyl beta-hydroxylase; transcription factor jumonji/aspartyl beta-hydroxylase 3197227..3198138 Parvibaculum lavamentivorans DS-1 5456400 YP_001414263.1 CDS Plav_2999 NC_009719.1 3198146 3200362 R PFAM: lipopolysaccharide biosynthesis protein; KEGG: mag:amb1450 succinoglycan biosynthesis transport protein ExoP; non-specific protein-tyrosine kinase complement(3198146..3200362) Parvibaculum lavamentivorans DS-1 5456379 YP_001414264.1 CDS Plav_3000 NC_009719.1 3200630 3201190 D PFAM: polysaccharide export protein; KEGG: rpd:RPD_4418 polysaccharide export protein; polysaccharide export protein 3200630..3201190 Parvibaculum lavamentivorans DS-1 5456388 YP_001414265.1 CDS Plav_3001 NC_009719.1 3201190 3202410 D PFAM: glycosyl transferase group 1; KEGG: bra:BRADO4230 putative glycosyl transferase, group 1; group 1 glycosyl transferase 3201190..3202410 Parvibaculum lavamentivorans DS-1 5456233 YP_001414266.1 CDS Plav_3002 NC_009719.1 3202412 3203737 D KEGG: atc:AGR_C_2278 hypothetical protein; hypothetical protein 3202412..3203737 Parvibaculum lavamentivorans DS-1 5455792 YP_001414267.1 CDS Plav_3003 NC_009719.1 3204050 3204712 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; KEGG: rru:Rru_A1799 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 3204050..3204712 Parvibaculum lavamentivorans DS-1 5456247 YP_001414268.1 CDS Plav_3004 NC_009719.1 3204860 3206254 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rru:Rru_A1798 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 3204860..3206254 Parvibaculum lavamentivorans DS-1 5456246 YP_001414269.1 CDS Plav_3005 NC_009719.1 3206428 3207087 D KEGG: rpc:RPC_2569 hypothetical protein; hypothetical protein 3206428..3207087 Parvibaculum lavamentivorans DS-1 5455745 YP_001414270.1 CDS valS NC_009719.1 3207194 3209923 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3207194..3209923 Parvibaculum lavamentivorans DS-1 5456209 YP_001414271.1 CDS Plav_3007 NC_009719.1 3210095 3210334 R hypothetical protein complement(3210095..3210334) Parvibaculum lavamentivorans DS-1 5456254 YP_001414272.1 CDS Plav_3008 NC_009719.1 3210483 3210845 R KEGG: rsq:Rsph17025_1177 hypothetical protein; hypothetical protein complement(3210483..3210845) Parvibaculum lavamentivorans DS-1 5456252 YP_001414273.1 CDS Plav_3009 NC_009719.1 3211014 3212099 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: alcohol dehydrogenase class III; alcohol dehydrogenase complement(3211014..3212099) Parvibaculum lavamentivorans DS-1 5455631 YP_001414274.1 CDS Plav_3010 NC_009719.1 3212320 3214050 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 3212320..3214050 Parvibaculum lavamentivorans DS-1 5455283 YP_001414275.1 CDS Plav_3011 NC_009719.1 3214227 3215063 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfu:Sfum_1484 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 3214227..3215063 Parvibaculum lavamentivorans DS-1 5456274 YP_001414276.1 CDS Plav_3012 NC_009719.1 3215143 3215526 R PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: rpa:RPA4824 hypothetical protein; ethyl tert-butyl ether degradation EthD complement(3215143..3215526) Parvibaculum lavamentivorans DS-1 5456228 YP_001414277.1 CDS Plav_3013 NC_009719.1 3215694 3217241 D PFAM: conserved hypothetical protein; MlrC domain protein; KEGG: rpa:RPA1213 hypothetical protein; MlrC domain-containing protein 3215694..3217241 Parvibaculum lavamentivorans DS-1 5454092 YP_001414278.1 CDS Plav_3014 NC_009719.1 3217244 3217690 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppf:Pput_3744 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(3217244..3217690) Parvibaculum lavamentivorans DS-1 5456067 YP_001414279.1 CDS Plav_3015 NC_009719.1 3217793 3218695 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: bbr:BB2415 putative AraC-family transcriptional regulator; AraC-like transcriptional regulator 3217793..3218695 Parvibaculum lavamentivorans DS-1 5456112 YP_001414280.1 CDS Plav_3016 NC_009719.1 3218705 3219499 R PFAM: penicillin-binding protein transpeptidase; KEGG: mca:MCA2220 beta-lactamase; beta-lactamase complement(3218705..3219499) Parvibaculum lavamentivorans DS-1 5456201 YP_001414281.1 CDS Plav_3017 NC_009719.1 3219594 3220004 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rle:RL1541 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(3219594..3220004) Parvibaculum lavamentivorans DS-1 5455935 YP_001414282.1 CDS Plav_3018 NC_009719.1 3220295 3221080 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpa:RPA2861 exodeoxyribonuclease III; exodeoxyribonuclease III Xth complement(3220295..3221080) Parvibaculum lavamentivorans DS-1 5456173 YP_001414283.1 CDS Plav_3019 NC_009719.1 3221077 3221664 R PFAM: protein of unknown function DUF1457; hypothetical protein complement(3221077..3221664) Parvibaculum lavamentivorans DS-1 5456146 YP_001414284.1 CDS Plav_3020 NC_009719.1 3221774 3222124 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpa:RPA2856 protein of unknown function, HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein complement(3221774..3222124) Parvibaculum lavamentivorans DS-1 5456134 YP_001414285.1 CDS Plav_3021 NC_009719.1 3222268 3223458 D TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: rru:Rru_A1780 deoxyguanosinetriphosphate triphosphohydrolase; putative deoxyguanosinetriphosphate triphosphohydrolase 3222268..3223458 Parvibaculum lavamentivorans DS-1 5456080 YP_001414286.1 CDS argS NC_009719.1 3223544 3225295 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3223544..3225295 Parvibaculum lavamentivorans DS-1 5456145 YP_001414287.1 CDS Plav_3023 NC_009719.1 3225295 3226125 D PFAM: Sporulation domain protein; KEGG: mmr:Mmar10_1913 sporulation domain protein; sporulation domain-containing protein 3225295..3226125 Parvibaculum lavamentivorans DS-1 5456120 YP_001414288.1 CDS Plav_3024 NC_009719.1 3226122 3227135 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: glycosyl hydrolase, family 3; beta-N-acetylhexosaminidase 3226122..3227135 Parvibaculum lavamentivorans DS-1 5456106 YP_001414289.1 CDS Plav_3025 NC_009719.1 3227122 3228180 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: nwi:Nwi_1804 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 3227122..3228180 Parvibaculum lavamentivorans DS-1 5455994 YP_001414290.1 CDS Plav_3026 NC_009719.1 3228177 3228959 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: bbt:BBta_4418 hypothetical protein; putative transcriptional regulator 3228177..3228959 Parvibaculum lavamentivorans DS-1 5456132 YP_001414291.1 CDS Plav_3027 NC_009719.1 3229165 3229395 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: swi:Swit_3930 twin-arginine translocation protein, TatA/E family subunit; twin arginine-targeting protein translocase 3229165..3229395 Parvibaculum lavamentivorans DS-1 5456083 YP_001414292.1 CDS Plav_3028 NC_009719.1 3229456 3229935 D TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: rsh:Rsph17029_1200 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB 3229456..3229935 Parvibaculum lavamentivorans DS-1 5456005 YP_001414293.1 CDS Plav_3029 NC_009719.1 3229932 3230750 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: rpc:RPC_2515 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 3229932..3230750 Parvibaculum lavamentivorans DS-1 5456077 YP_001414294.1 CDS Plav_3030 NC_009719.1 3230885 3232192 D TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); seryl-tRNA synthetase class IIa; KEGG: sme:SMc02064 seryl-tRNA synthetase; seryl-tRNA synthetase 3230885..3232192 Parvibaculum lavamentivorans DS-1 5455915 YP_001414295.1 CDS Plav_3031 NC_009719.1 3232185 3233018 D TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; KEGG: mmr:Mmar10_1904 stationary-phase survival protein SurE; stationary-phase survival protein SurE 3232185..3233018 Parvibaculum lavamentivorans DS-1 5456062 YP_001414296.1 CDS Plav_3032 NC_009719.1 3233027 3233695 D TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: mag:amb2519 protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate O-methyltransferase 3233027..3233695 Parvibaculum lavamentivorans DS-1 5456059 YP_001414297.1 CDS Plav_3033 NC_009719.1 3233728 3234714 D PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: mag:amb2518 membrane protein related to metalloendopeptidase; peptidase M23B 3233728..3234714 Parvibaculum lavamentivorans DS-1 5455986 YP_001414298.1 CDS Plav_3034 NC_009719.1 3234724 3235638 R PFAM: protein of unknown function DUF815; KEGG: mes:Meso_1799 protein of unknown function DUF815; hypothetical protein complement(3234724..3235638) Parvibaculum lavamentivorans DS-1 5456047 YP_001414299.1 CDS Plav_3035 NC_009719.1 3235812 3236126 D TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: rpd:RPD_2778 preprotein translocase, YajC subunit; preprotein translocase subunit YajC 3235812..3236126 Parvibaculum lavamentivorans DS-1 5456032 YP_001414300.1 CDS secD NC_009719.1 3236166 3237773 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 3236166..3237773 Parvibaculum lavamentivorans DS-1 5455963 YP_001414301.1 CDS Plav_3037 NC_009719.1 3237796 3238746 D TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: nwi:Nwi_1768 SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecF 3237796..3238746 Parvibaculum lavamentivorans DS-1 5456002 YP_001414302.1 CDS Plav_3038 NC_009719.1 3238756 3239124 D PFAM: protein of unknown function DUF498; KEGG: rru:Rru_A1762 protein of unknown function DUF598; hypothetical protein 3238756..3239124 Parvibaculum lavamentivorans DS-1 5455468 YP_001414303.1 CDS Plav_3039 NC_009719.1 3239296 3239910 D KEGG: mmr:Mmar10_1897 hypothetical protein; hypothetical protein 3239296..3239910 Parvibaculum lavamentivorans DS-1 5455954 YP_001414304.1 CDS Plav_3040 NC_009719.1 3239977 3240822 D KEGG: atc:AGR_C_2873 putative phytoene synthase; putative phytoene synthase 3239977..3240822 Parvibaculum lavamentivorans DS-1 5455952 YP_001414305.1 CDS Plav_3041 NC_009719.1 3240823 3242265 R TIGRFAM: gid protein; PFAM: glucose-inhibited division protein A; KEGG: mlo:mlr1064 glucose-inhibited division protein; hypothetical protein complement(3240823..3242265) Parvibaculum lavamentivorans DS-1 5455434 YP_001414306.1 CDS Plav_3042 NC_009719.1 3242692 3244122 R PFAM: Amidase; KEGG: hne:HNE_1602 putative 6-aminohexanoate-cyclic-dimer hydrolase; amidase complement(3242692..3244122) Parvibaculum lavamentivorans DS-1 5456000 YP_001414307.1 CDS Plav_3043 NC_009719.1 3244143 3245570 R PFAM: Amidase; KEGG: mxa:MXAN_2852 amidase family protein; amidase complement(3244143..3245570) Parvibaculum lavamentivorans DS-1 5455961 YP_001414308.1 CDS Plav_3044 NC_009719.1 3245650 3247782 R PFAM: Alkaline phosphatase; KEGG: aba:Acid345_3950 phosphodiesterase/alkaline phosphatase D; alkaline phosphatase complement(3245650..3247782) Parvibaculum lavamentivorans DS-1 5455953 YP_001414309.1 CDS Plav_3045 NC_009719.1 3247857 3250934 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bms:BR1104 excinuclease ABC, A subunit; excinuclease ABC subunit A complement(3247857..3250934) Parvibaculum lavamentivorans DS-1 5455929 YP_001414310.1 CDS Plav_3046 NC_009719.1 3251117 3251389 D KEGG: rpc:RPC_2516 hypothetical protein; hypothetical protein 3251117..3251389 Parvibaculum lavamentivorans DS-1 5456952 YP_001414311.1 CDS Plav_3047 NC_009719.1 3251480 3251959 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 3251480..3251959 Parvibaculum lavamentivorans DS-1 5455885 YP_001414312.1 CDS Plav_3048 NC_009719.1 3251983 3252840 D KEGG: pen:PSEEN2349 hypothetical protein; hypothetical protein 3251983..3252840 Parvibaculum lavamentivorans DS-1 5455889 YP_001414313.1 CDS Plav_3049 NC_009719.1 3253018 3255915 D TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; KEGG: rpe:RPE_2764 DNA gyrase, A subunit; DNA gyrase subunit A 3253018..3255915 Parvibaculum lavamentivorans DS-1 5455794 YP_001414314.1 CDS Plav_3050 NC_009719.1 3255927 3256439 D TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase; KEGG: bja:bll4693 phosphopantetheine adenylyltransferase; pantetheine-phosphate adenylyltransferase 3255927..3256439 Parvibaculum lavamentivorans DS-1 5455903 YP_001414315.1 CDS Plav_3051 NC_009719.1 3256477 3257022 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: swi:Swit_3531 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3256477..3257022 Parvibaculum lavamentivorans DS-1 5455501 YP_001414316.1 CDS Plav_3052 NC_009719.1 3257045 3257518 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mes:Meso_1404 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3257045..3257518 Parvibaculum lavamentivorans DS-1 5455853 YP_001414317.1 CDS queA NC_009719.1 3257743 3258795 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 3257743..3258795 Parvibaculum lavamentivorans DS-1 5455612 YP_001414318.1 CDS Plav_3054 NC_009719.1 3258792 3259931 D TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; KEGG: pde:Pden_1891 queuine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 3258792..3259931 Parvibaculum lavamentivorans DS-1 5455817 YP_001414319.1 CDS Plav_3055 NC_009719.1 3259935 3262496 R PFAM: Pyrrolo-quinoline quinone; KEGG: rsq:Rsph17025_3339 GntR domain protein; Pyrrolo-quinoline quinone complement(3259935..3262496) Parvibaculum lavamentivorans DS-1 5455772 YP_001414320.1 CDS Plav_3056 NC_009719.1 3262970 3263491 D KEGG: eli:ELI_03550 hypothetical protein; hypothetical protein 3262970..3263491 Parvibaculum lavamentivorans DS-1 5455207 YP_001414321.1 CDS Plav_3057 NC_009719.1 3263509 3263943 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bbt:BBta_3548 hypothetical protein; glutathione-dependent formaldehyde-activating protein 3263509..3263943 Parvibaculum lavamentivorans DS-1 5455690 YP_001414322.1 CDS Plav_3058 NC_009719.1 3263982 3264383 R KEGG: bmb:BruAb2_0611 hypothetical Rnk transcriptional regulator; GreA/GreB family elongation factor complement(3263982..3264383) Parvibaculum lavamentivorans DS-1 5455770 YP_001414323.1 CDS Plav_3059 NC_009719.1 3264397 3264912 R KEGG: nmu:Nmul_A0938 GreA/GreB family elongation factor; GreA/GreB family elongation factor complement(3264397..3264912) Parvibaculum lavamentivorans DS-1 5455809 YP_001414324.1 CDS Plav_3060 NC_009719.1 3265296 3266177 D PFAM: SH3 type 3 domain protein; SMART: helix-turn-helix domain protein; SH3 domain protein; KEGG: bur:Bcep18194_A5114 transcriptional regulator, XRE family; SH3 type 3 domain-containing protein 3265296..3266177 Parvibaculum lavamentivorans DS-1 5455634 YP_001414325.1 CDS Plav_3061 NC_009719.1 3266358 3266999 R PFAM: carbonic anhydrase; KEGG: ret:RHE_CH04103 carbonic anhydrase protein; carbonate dehydratase complement(3266358..3266999) Parvibaculum lavamentivorans DS-1 5455777 YP_001414326.1 CDS Plav_3062 NC_009719.1 3267233 3267553 D hypothetical protein 3267233..3267553 Parvibaculum lavamentivorans DS-1 5455705 YP_001414327.1 CDS Plav_3063 NC_009719.1 3267721 3268515 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3267721..3268515 Parvibaculum lavamentivorans DS-1 5455448 YP_001414328.1 CDS Plav_3064 NC_009719.1 3268528 3270447 D TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; adenylylsulfate kinase; elongation factor Tu domain 2 protein; KEGG: mag:amb2212 NodQ bifunctional enzyme; sulfate adenylyltransferase large subunit 3268528..3270447 Parvibaculum lavamentivorans DS-1 5455689 YP_001414329.1 CDS Plav_3065 NC_009719.1 3270480 3271466 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: mlo:mlr5697 UDP-galactose 4-epimerase; UDP-glucose 4-epimerase 3270480..3271466 Parvibaculum lavamentivorans DS-1 5455215 YP_001414330.1 CDS Plav_3066 NC_009719.1 3271601 3272959 D PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: rpd:RPD_2617 nucleotidyl transferase; nucleotidyl transferase 3271601..3272959 Parvibaculum lavamentivorans DS-1 5455743 YP_001414331.1 CDS Plav_3067 NC_009719.1 3272961 3274784 D TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: sal:Sala_1366 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; glucosamine--fructose-6-phosphate aminotransferase 3272961..3274784 Parvibaculum lavamentivorans DS-1 5453748 YP_001414332.1 CDS Plav_3068 NC_009719.1 3274955 3276241 D PFAM: TPR repeat-containing protein; Sporulation domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_28481 hypothetical protein; sporulation domain-containing protein 3274955..3276241 Parvibaculum lavamentivorans DS-1 5455673 YP_001414333.1 CDS Plav_3069 NC_009719.1 3276387 3277895 D PFAM: protein of unknown function DUF35; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: hypothetical protein; hypothetical protein 3276387..3277895 Parvibaculum lavamentivorans DS-1 5455716 YP_001414334.1 CDS Plav_3070 NC_009719.1 3277908 3279110 D KEGG: thiolase family protein; acetyl-CoA acetyltransferase 3277908..3279110 Parvibaculum lavamentivorans DS-1 5455610 YP_001414335.1 CDS Plav_3071 NC_009719.1 3279248 3280756 D PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: mgm:Mmc1_0390 membrane bound O-acyl transferase, MBOAT family protein; membrane bound O-acyl transferase MBOAT family protein 3279248..3280756 Parvibaculum lavamentivorans DS-1 5455583 YP_001414336.1 CDS Plav_3072 NC_009719.1 3280760 3281782 D KEGG: mgm:Mmc1_0389 hypothetical protein; hypothetical protein 3280760..3281782 Parvibaculum lavamentivorans DS-1 5455504 YP_001414337.1 CDS Plav_3073 NC_009719.1 3281779 3282276 R PFAM: protein of unknown function DUF1457; hypothetical protein complement(3281779..3282276) Parvibaculum lavamentivorans DS-1 5455681 YP_001414338.1 CDS Plav_3074 NC_009719.1 3282381 3283505 R KEGG: swi:Swit_0600 hypothetical protein; hypothetical protein complement(3282381..3283505) Parvibaculum lavamentivorans DS-1 5455611 YP_001414339.1 CDS Plav_3075 NC_009719.1 3283508 3283891 R KEGG: rpb:RPB_3603 hypothetical protein; hypothetical protein complement(3283508..3283891) Parvibaculum lavamentivorans DS-1 5455655 YP_001414340.1 CDS Plav_3076 NC_009719.1 3283892 3284905 R PFAM: aminoglycoside phosphotransferase; KEGG: bja:blr2944 hypothetical protein; aminoglycoside phosphotransferase complement(3283892..3284905) Parvibaculum lavamentivorans DS-1 5455581 YP_001414341.1 CDS Plav_3077 NC_009719.1 3284907 3285941 R KEGG: hne:HNE_2392 hypothetical protein; hypothetical protein complement(3284907..3285941) Parvibaculum lavamentivorans DS-1 5455544 YP_001414342.1 CDS Plav_3078 NC_009719.1 3286137 3286886 D PFAM: protein of unknown function DUF502; KEGG: mlo:mll0832 hypothetical protein; hypothetical protein 3286137..3286886 Parvibaculum lavamentivorans DS-1 5455487 YP_001414343.1 CDS Plav_3079 NC_009719.1 3286872 3288956 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(3286872..3288956) Parvibaculum lavamentivorans DS-1 5455428 YP_001414344.1 CDS Plav_3080 NC_009719.1 3289054 3289359 D PFAM: protein of unknown function DUF339; KEGG: rpb:RPB_2851 protein of unknown function DUF339; hypothetical protein 3289054..3289359 Parvibaculum lavamentivorans DS-1 5455627 YP_001414345.1 CDS Plav_3081 NC_009719.1 3289376 3292891 D TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bbt:BBta_4157 transcription repair coupling factor; transcription-repair coupling factor 3289376..3292891 Parvibaculum lavamentivorans DS-1 5456929 YP_001414346.1 CDS Plav_3082 NC_009719.1 3292895 3293545 R PFAM: DSBA oxidoreductase; KEGG: mlo:mlr0515 similar to FrnE protein; DSBA oxidoreductase complement(3292895..3293545) Parvibaculum lavamentivorans DS-1 5455591 YP_001414347.1 CDS Plav_3083 NC_009719.1 3293702 3294481 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rme:Rmet_1147 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3293702..3294481 Parvibaculum lavamentivorans DS-1 5454482 YP_001414348.1 CDS Plav_3084 NC_009719.1 3294546 3294857 D hypothetical protein 3294546..3294857 Parvibaculum lavamentivorans DS-1 5455263 YP_001414349.1 CDS Plav_3085 NC_009719.1 3294976 3296430 D TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: hha:Hhal_0554 sodium/proline symporter; sodium/proline symporter 3294976..3296430 Parvibaculum lavamentivorans DS-1 5454281 YP_001414350.1 CDS Plav_3086 NC_009719.1 3296473 3296745 D hypothetical protein 3296473..3296745 Parvibaculum lavamentivorans DS-1 5455585 YP_001414351.1 CDS Plav_3087 NC_009719.1 3296746 3298326 R PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPO2069 benzoate-coenzyme A ligase, putative; AMP-dependent synthetase and ligase complement(3296746..3298326) Parvibaculum lavamentivorans DS-1 5455507 YP_001414352.1 CDS Plav_3088 NC_009719.1 3298444 3299574 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 3298444..3299574 Parvibaculum lavamentivorans DS-1 5456895 YP_001414353.1 CDS Plav_3089 NC_009719.1 3299571 3300329 D PFAM: Phosphoglycerate mutase; KEGG: hne:HNE_1982 phosphoglycerate mutase family protein; phosphoglycerate mutase 3299571..3300329 Parvibaculum lavamentivorans DS-1 5455463 YP_001414354.1 CDS Plav_3090 NC_009719.1 3300326 3301987 R PFAM: AMP-dependent synthetase and ligase; KEGG: sal:Sala_1007 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(3300326..3301987) Parvibaculum lavamentivorans DS-1 5455545 YP_001414355.1 CDS Plav_3091 NC_009719.1 3302029 3302952 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: sal:Sala_1009 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(3302029..3302952) Parvibaculum lavamentivorans DS-1 5455443 YP_001414356.1 CDS Plav_3092 NC_009719.1 3303024 3304376 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: csa:Csal_3004 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(3303024..3304376) Parvibaculum lavamentivorans DS-1 5455475 YP_001414357.1 CDS Plav_3093 NC_009719.1 3304552 3306474 R PFAM: extracellular solute-binding protein family 5; KEGG: nha:Nham_2050 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(3304552..3306474) Parvibaculum lavamentivorans DS-1 5456927 YP_001414358.1 CDS Plav_3094 NC_009719.1 3306563 3307120 D PFAM: Invasion associated locus B family protein; KEGG: rpa:RPA0830 hypothetical protein; invasion associated locus B family protein 3306563..3307120 Parvibaculum lavamentivorans DS-1 5454233 YP_001414359.1 CDS Plav_3095 NC_009719.1 3307117 3307836 R PFAM: transferase hexapeptide repeat containing protein; KEGG: sde:Sde_3507 acetyltransferase (isoleucine patch superfamily)-like; hexapaptide repeat-containing transferase complement(3307117..3307836) Parvibaculum lavamentivorans DS-1 5455494 YP_001414360.1 CDS Plav_3096 NC_009719.1 3307941 3308273 R TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: rpc:RPC_2615 hemimethylated DNA-binding region; hemimethylated DNA-binding protein complement(3307941..3308273) Parvibaculum lavamentivorans DS-1 5455338 YP_001414361.1 CDS Plav_3097 NC_009719.1 3308434 3309537 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pat:Patl_1928 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 3308434..3309537 Parvibaculum lavamentivorans DS-1 5454806 YP_001414362.1 CDS Plav_3098 NC_009719.1 3309547 3310662 R PFAM: HpcH/HpaI aldolase; KEGG: rrs:RoseRS_4173 HpcH/HpaI aldolase; HpcH/HpaI aldolase complement(3309547..3310662) Parvibaculum lavamentivorans DS-1 5454807 YP_001414363.1 CDS Plav_3099 NC_009719.1 3310663 3311955 R PFAM: major facilitator superfamily MFS_1; KEGG: sat:SYN_00428 oxalate/formate antiporter; major facilitator superfamily transporter complement(3310663..3311955) Parvibaculum lavamentivorans DS-1 5455395 YP_001414364.1 CDS Plav_3100 NC_009719.1 3312038 3312607 R KEGG: swi:Swit_1601 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase complement(3312038..3312607) Parvibaculum lavamentivorans DS-1 5455281 YP_001414365.1 CDS Plav_3101 NC_009719.1 3312600 3313883 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr1018 hypothetical protein; major facilitator superfamily transporter complement(3312600..3313883) Parvibaculum lavamentivorans DS-1 5455432 YP_001414366.1 CDS Plav_3102 NC_009719.1 3314045 3314662 D PFAM: Glutathione S-transferase domain; KEGG: rpa:RPA1576 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 3314045..3314662 Parvibaculum lavamentivorans DS-1 5454176 YP_001414367.1 CDS Plav_3103 NC_009719.1 3314782 3315198 D hypothetical protein 3314782..3315198 Parvibaculum lavamentivorans DS-1 5455299 YP_001414368.1 CDS Plav_3104 NC_009719.1 3315252 3315671 D PFAM: thioesterase superfamily protein; KEGG: sen:SACE_1886 phenylacetic acid degradation-related protein; thioesterase superfamily protein 3315252..3315671 Parvibaculum lavamentivorans DS-1 5455381 YP_001414369.1 CDS Plav_3105 NC_009719.1 3315909 3316814 D PFAM: protein of unknown function DUF72; KEGG: mes:Meso_3462 protein of unknown function DUF72; hypothetical protein 3315909..3316814 Parvibaculum lavamentivorans DS-1 5455276 YP_001414370.1 CDS Plav_3106 NC_009719.1 3316969 3317298 D hypothetical protein 3316969..3317298 Parvibaculum lavamentivorans DS-1 5454121 YP_001414371.1 CDS Plav_3107 NC_009719.1 3317315 3318658 R PFAM: MmgE/PrpD family protein; KEGG: hne:HNE_1103 MmgE/PrpD family protein; MmgE/PrpD family protein complement(3317315..3318658) Parvibaculum lavamentivorans DS-1 5455290 YP_001414372.1 CDS Plav_3108 NC_009719.1 3318848 3319867 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: mag:amb2452 lipoprotein; rare lipoprotein A 3318848..3319867 Parvibaculum lavamentivorans DS-1 5455308 YP_001414373.1 CDS Plav_3109 NC_009719.1 3319905 3321059 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rru:Rru_A1704 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 3319905..3321059 Parvibaculum lavamentivorans DS-1 5454230 YP_001414374.1 CDS Plav_3110 NC_009719.1 3321062 3321691 D PFAM: thymidylate kinase; KEGG: mag:amb2450 thymidylate kinase; dTMP kinase 3321062..3321691 Parvibaculum lavamentivorans DS-1 5455303 YP_001414375.1 CDS Plav_3111 NC_009719.1 3321826 3322503 D PFAM: peptidase M23B; KEGG: rru:Rru_A0504 peptidase M23B; peptidase M23B 3321826..3322503 Parvibaculum lavamentivorans DS-1 5455271 YP_001414376.1 CDS Plav_3112 NC_009719.1 3322629 3323792 D KEGG: mag:amb2449 ATPase involved in DNA replication; DNA replication ATPase 3322629..3323792 Parvibaculum lavamentivorans DS-1 5453403 YP_001414377.1 CDS Plav_3113 NC_009719.1 3323933 3325495 D TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: mes:Meso_1583 methionyl-tRNA synthetase; methionyl-tRNA synthetase 3323933..3325495 Parvibaculum lavamentivorans DS-1 5454287 YP_001414378.1 CDS Plav_3114 NC_009719.1 3325492 3326298 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; amidohydrolase 2; KEGG: mes:Meso_1584 hydrolase, TatD family; TatD family hydrolase 3325492..3326298 Parvibaculum lavamentivorans DS-1 5455038 YP_001414379.1 CDS Plav_3115 NC_009719.1 3326295 3327113 D KEGG: mmr:Mmar10_1451 beta-lactamase-like protein; beta-lactamase-like protein 3326295..3327113 Parvibaculum lavamentivorans DS-1 5454045 YP_001414380.1 CDS Plav_3116 NC_009719.1 3327182 3327574 R hypothetical protein complement(3327182..3327574) Parvibaculum lavamentivorans DS-1 5454720 YP_001414381.1 CDS Plav_3117 NC_009719.1 3327794 3328180 R KEGG: bce:BC4527 hypothetical membrane spanning protein; hypothetical protein complement(3327794..3328180) Parvibaculum lavamentivorans DS-1 5456861 YP_001414382.1 CDS Plav_3118 NC_009719.1 3328572 3329459 R KEGG: pna:Pnap_3705 filamentous haemagglutinin family outer membrane protein; filamentous hemagglutinin outer membrane protein complement(3328572..3329459) Parvibaculum lavamentivorans DS-1 5456928 YP_001414383.1 CDS Plav_3119 NC_009719.1 3329817 3330467 D PFAM: beta-lactamase domain protein; KEGG: rso:RSc3268 hypothetical protein; beta-lactamase domain-containing protein 3329817..3330467 Parvibaculum lavamentivorans DS-1 5454780 YP_001414384.1 CDS Plav_3120 NC_009719.1 3330623 3332041 D PFAM: major facilitator superfamily MFS_1; KEGG: ter:Tery_2105 sodium:galactoside symporter family protein; major facilitator superfamily transporter 3330623..3332041 Parvibaculum lavamentivorans DS-1 5453964 YP_001414385.1 CDS Plav_3121 NC_009719.1 3332054 3332866 D TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: mazg protein; K02428 MazG protein; MazG family protein 3332054..3332866 Parvibaculum lavamentivorans DS-1 5454563 YP_001414386.1 CDS Plav_3122 NC_009719.1 3332863 3333693 R PFAM: inositol monophosphatase; KEGG: stp:Strop_0369 inositol monophosphatase; inositol monophosphatase complement(3332863..3333693) Parvibaculum lavamentivorans DS-1 5454729 YP_001414387.1 CDS Plav_3123 NC_009719.1 3333695 3335119 R PFAM: GTP-binding protein HSR1-related; KEGG: ret:RHE_CH01955 GTP-binding protein; GTP-binding protein HSR1-like complement(3333695..3335119) Parvibaculum lavamentivorans DS-1 5454716 YP_001414388.1 CDS Plav_3124 NC_009719.1 3335130 3335378 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: host factor-I protein; K03666 host factor-I protein; RNA chaperone Hfq complement(3335130..3335378) Parvibaculum lavamentivorans DS-1 5454725 YP_001414389.1 CDS Plav_3125 NC_009719.1 3335583 3336440 R PFAM: aminotransferase class IV; KEGG: mes:Meso_1614 aminotransferase, class IV; class IV aminotransferase complement(3335583..3336440) Parvibaculum lavamentivorans DS-1 5455197 YP_001414390.1 CDS trkA NC_009719.1 3336459 3337835 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(3336459..3337835) Parvibaculum lavamentivorans DS-1 5453582 YP_001414391.1 CDS Plav_3127 NC_009719.1 3337870 3339264 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: rpd:RPD_2592 sigma-54 factor, interaction region; two component sigma-54 specific Fis family transcriptional regulator complement(3337870..3339264) Parvibaculum lavamentivorans DS-1 5454652 YP_001414392.1 CDS Plav_3128 NC_009719.1 3339254 3341593 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: mag:amb2368 signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; multi-sensor signal transduction histidine kinase complement(3339254..3341593) Parvibaculum lavamentivorans DS-1 5453735 YP_001414393.1 CDS Plav_3129 NC_009719.1 3341776 3343218 R TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bra:BRADO3866 nitrogen assimilation regulatory protein; nitrogen metabolism transcriptional regulator NtrC complement(3341776..3343218) Parvibaculum lavamentivorans DS-1 5456873 YP_001414394.1 CDS Plav_3130 NC_009719.1 3343244 3344359 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rpb:RPB_2883 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB complement(3343244..3344359) Parvibaculum lavamentivorans DS-1 5453567 YP_001414395.1 CDS Plav_3131 NC_009719.1 3344359 3345384 R TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: sil:SPO2089 tRNA-dihydrouridine synthase, putative; nifR3 family TIM-barrel protein complement(3344359..3345384) Parvibaculum lavamentivorans DS-1 5456916 YP_001414396.1 CDS Plav_3132 NC_009719.1 3345497 3346645 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: rru:Rru_A1674 bifunctional enzyme, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 3345497..3346645 Parvibaculum lavamentivorans DS-1 5453865 YP_001414397.1 CDS Plav_3133 NC_009719.1 3346649 3347149 D PFAM: phosphatidylglycerophosphatase A; KEGG: mag:amb2547 phosphatidylglycerophosphatase A and related protein; phosphatidylglycerophosphatase A 3346649..3347149 Parvibaculum lavamentivorans DS-1 5454135 YP_001414398.1 CDS Plav_3134 NC_009719.1 3347146 3347640 D PFAM: CinA domain protein; KEGG: hne:HNE_2017 CinA domain protein; CinA domain-containing protein 3347146..3347640 Parvibaculum lavamentivorans DS-1 5454653 YP_001414399.1 CDS Plav_3135 NC_009719.1 3347643 3348128 R PFAM: cyclase/dehydrase; KEGG: pde:Pden_3870 cyclase/dehydrase; cyclase/dehydrase complement(3347643..3348128) Parvibaculum lavamentivorans DS-1 5456913 YP_001414400.1 CDS Plav_3136 NC_009719.1 3348137 3349102 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(3348137..3349102) Parvibaculum lavamentivorans DS-1 5453757 YP_001414401.1 CDS Plav_3137 NC_009719.1 3349259 3350788 R PFAM: sulfatase; KEGG: vei:Veis_0934 sulfatase; sulfatase complement(3349259..3350788) Parvibaculum lavamentivorans DS-1 5454824 YP_001414402.1 CDS Plav_3138 NC_009719.1 3350880 3352277 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: acr:Acry_2823 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(3350880..3352277) Parvibaculum lavamentivorans DS-1 5455014 YP_001414403.1 CDS Plav_3139 NC_009719.1 3352277 3353569 R TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pde:Pden_3890 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase complement(3352277..3353569) Parvibaculum lavamentivorans DS-1 5456863 YP_001414404.1 CDS Plav_3140 NC_009719.1 3353580 3354983 R catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta complement(3353580..3354983) Parvibaculum lavamentivorans DS-1 5454554 YP_001414405.1 CDS Plav_3141 NC_009719.1 3354987 3356012 R PFAM: dehydrogenase E1 component; KEGG: nha:Nham_1749 pyruvate dehydrogenase (lipoamide); pyruvate dehydrogenase (acetyl-transferring) complement(3354987..3356012) Parvibaculum lavamentivorans DS-1 5454186 YP_001414406.1 CDS Plav_3142 NC_009719.1 3356198 3356551 R PFAM: Septum formation initiator; KEGG: mlo:mlr0382 hypothetical protein; septum formation initiator complement(3356198..3356551) Parvibaculum lavamentivorans DS-1 5454384 YP_001414407.1 CDS Plav_3143 NC_009719.1 3356621 3357895 R PFAM: enolase; KEGG: sme:SMc01028 probable enolase protein; phosphopyruvate hydratase complement(3356621..3357895) Parvibaculum lavamentivorans DS-1 5454091 YP_001414408.1 CDS Plav_3144 NC_009719.1 3358005 3359918 R PFAM: extracellular solute-binding protein family 5; KEGG: hha:Hhal_0597 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(3358005..3359918) Parvibaculum lavamentivorans DS-1 5454099 YP_001414409.1 CDS Plav_3145 NC_009719.1 3360122 3362485 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC0823 outer membrane hemin receptor; TonB-dependent receptor plug 3360122..3362485 Parvibaculum lavamentivorans DS-1 5454093 YP_001414410.1 CDS Plav_3146 NC_009719.1 3362561 3363118 R PFAM: transcriptional regulator PadR family protein; KEGG: btk:BT9727_1669 transcriptional regulator, PadR family; PadR-like family transcriptional regulator complement(3362561..3363118) Parvibaculum lavamentivorans DS-1 5454130 YP_001414411.1 CDS Plav_3148 NC_009719.1 3365387 3366097 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: bbt:BBta_4081 hypothetical protein; exsB protein 3365387..3366097 Parvibaculum lavamentivorans DS-1 5453769 YP_001414412.1 CDS Plav_3149 NC_009719.1 3366102 3366734 D KEGG: hypothetical protein; hypothetical protein 3366102..3366734 Parvibaculum lavamentivorans DS-1 5453795 YP_001414413.1 CDS Plav_3150 NC_009719.1 3366734 3367102 D PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: xac:XAC3614 6-pyruvoyltetrahydropterin synthase; 6-pyruvoyl-tetrahydropterin synthase 3366734..3367102 Parvibaculum lavamentivorans DS-1 5455194 YP_001414414.1 CDS Plav_3151 NC_009719.1 3367102 3367566 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3367102..3367566 Parvibaculum lavamentivorans DS-1 5455128 YP_001414415.1 CDS Plav_3152 NC_009719.1 3367636 3369042 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mag:amb3096 signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3367636..3369042 Parvibaculum lavamentivorans DS-1 5453637 YP_001414416.1 CDS Plav_3153 NC_009719.1 3369089 3369745 R PFAM: ATP-binding region ATPase domain protein; KEGG: mag:amb3096 signal transduction histidine kinase; histidine kinase complement(3369089..3369745) Parvibaculum lavamentivorans DS-1 5454416 YP_001414417.1 CDS Plav_3154 NC_009719.1 3369820 3370728 D PFAM: Phytanoyl-CoA dioxygenase; KEGG: eli:ELI_14540 hypothetical protein; phytanoyl-CoA dioxygenase 3369820..3370728 Parvibaculum lavamentivorans DS-1 5453830 YP_001414418.1 CDS Plav_3155 NC_009719.1 3370725 3371558 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(3370725..3371558) Parvibaculum lavamentivorans DS-1 5456896 YP_001414419.1 CDS pyrG NC_009719.1 3371565 3373193 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3371565..3373193) Parvibaculum lavamentivorans DS-1 5454501 YP_001414420.1 CDS Plav_3157 NC_009719.1 3373303 3373737 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: rru:Rru_A1888 preprotein translocase SecG subunit; preprotein translocase subunit SecG complement(3373303..3373737) Parvibaculum lavamentivorans DS-1 5453874 YP_001414421.1 CDS Plav_3158 NC_009719.1 3373976 3374167 R KEGG: bbt:BBta_4786 putative exported protein of unknown function; hypothetical protein complement(3373976..3374167) Parvibaculum lavamentivorans DS-1 5453551 YP_001414422.1 CDS Plav_3159 NC_009719.1 3374171 3374341 R hypothetical protein complement(3374171..3374341) Parvibaculum lavamentivorans DS-1 5455120 YP_001414423.1 CDS Plav_3160 NC_009719.1 3374374 3374601 R KEGG: bbt:BBta_6772 hypothetical protein; hypothetical protein complement(3374374..3374601) Parvibaculum lavamentivorans DS-1 5453393 YP_001414424.1 CDS Plav_3161 NC_009719.1 3374651 3374860 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bja:bsl3986 cold shock protein; cold-shock DNA-binding domain-containing protein complement(3374651..3374860) Parvibaculum lavamentivorans DS-1 5454772 YP_001414425.1 CDS Plav_3162 NC_009719.1 3375089 3375991 R KEGG: rme:Rmet_3279 putative transmembrane transcriptional regulator (anti-sigma factor); putative transmembrane anti-sigma factor complement(3375089..3375991) Parvibaculum lavamentivorans DS-1 5453819 YP_001414426.1 CDS Plav_3163 NC_009719.1 3375988 3376536 R TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mes:Meso_0146 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(3375988..3376536) Parvibaculum lavamentivorans DS-1 5454876 YP_001414427.1 CDS Plav_3164 NC_009719.1 3376725 3377132 D KEGG: csa:Csal_1035 hypothetical protein; hypothetical protein 3376725..3377132 Parvibaculum lavamentivorans DS-1 5454526 YP_001414428.1 CDS Plav_3165 NC_009719.1 3377247 3377777 R PFAM: protein of unknown function DUF1457; hypothetical protein complement(3377247..3377777) Parvibaculum lavamentivorans DS-1 5453650 YP_001414429.1 CDS Plav_3166 NC_009719.1 3377858 3378610 R PFAM: triosephosphate isomerase; KEGG: nwi:Nwi_1835 triosephosphate isomerase; Triose-phosphate isomerase complement(3377858..3378610) Parvibaculum lavamentivorans DS-1 5454252 YP_001414430.1 CDS Plav_3167 NC_009719.1 3379273 3379617 D hypothetical protein 3379273..3379617 Parvibaculum lavamentivorans DS-1 5454636 YP_001414431.1 CDS Plav_3168 NC_009719.1 3379794 3381689 D KEGG: rpe:RPE_2592 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3379794..3381689 Parvibaculum lavamentivorans DS-1 5454659 YP_001414432.1 CDS Plav_3169 NC_009719.1 3381686 3383194 D TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: rru:Rru_A1891 anthranilate synthase component I; anthranilate synthase component I 3381686..3383194 Parvibaculum lavamentivorans DS-1 5455164 YP_001414433.1 CDS Plav_3170 NC_009719.1 3383394 3384614 R PFAM: monooxygenase FAD-binding; KEGG: mxa:MXAN_6265 monooxygenase, FAD-dependent; hypothetical protein complement(3383394..3384614) Parvibaculum lavamentivorans DS-1 5454137 YP_001414434.1 CDS Plav_3171 NC_009719.1 3384721 3385314 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: sil:SPO2149 anthranilate synthase component II; glutamine amidotransferase of anthranilate synthase 3384721..3385314 Parvibaculum lavamentivorans DS-1 5454247 YP_001414435.1 CDS Plav_3172 NC_009719.1 3385334 3386359 D TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; KEGG: rru:Rru_A1896 anthranilate phosphoribosyl transferase; anthranilate phosphoribosyltransferase 3385334..3386359 Parvibaculum lavamentivorans DS-1 5454550 YP_001414436.1 CDS Plav_3173 NC_009719.1 3386352 3387149 D PFAM: Indole-3-glycerol phosphate synthase; KEGG: rpb:RPB_2798 indole-3-glycerol-phosphate synthase; Indole-3-glycerol phosphate synthase 3386352..3387149 Parvibaculum lavamentivorans DS-1 5453525 YP_001414437.1 CDS Plav_3174 NC_009719.1 3387313 3387822 D PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_0922 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3387313..3387822 Parvibaculum lavamentivorans DS-1 5453880 YP_001414438.1 CDS Plav_3175 NC_009719.1 3387826 3388674 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3387826..3388674 Parvibaculum lavamentivorans DS-1 5453700 YP_001414439.1 CDS Plav_3176 NC_009719.1 3388720 3389202 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: bbt:BBta_4484 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 3388720..3389202 Parvibaculum lavamentivorans DS-1 5454376 YP_001414440.1 CDS Plav_3177 NC_009719.1 3389206 3390417 D TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: mag:amb2865 molybdopterin biosynthesis enzyme; molybdenum cofactor synthesis domain-containing protein 3389206..3390417 Parvibaculum lavamentivorans DS-1 5453423 YP_001414441.1 CDS Plav_3178 NC_009719.1 3390537 3391250 D Represses a number of genes involved in the response to DNA damage; LexA repressor 3390537..3391250 Parvibaculum lavamentivorans DS-1 5454505 YP_001414442.1 CDS Plav_3179 NC_009719.1 3391244 3393400 R PFAM: ComEC/Rec2-related protein; KEGG: rru:Rru_A1602 ComEC/Rec2-related protein; ComEC/Rec2-like protein complement(3391244..3393400) Parvibaculum lavamentivorans DS-1 5453347 YP_001414443.1 CDS Plav_3180 NC_009719.1 3393593 3395065 D TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: bme:BMEI0837 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 3393593..3395065 Parvibaculum lavamentivorans DS-1 5454198 YP_001414444.1 CDS Plav_3181 NC_009719.1 3395177 3396493 D TIGRFAM: citrate synthase I; PFAM: Citrate synthase; KEGG: bov:BOV_1106 citrate (Si)-synthase; citrate synthase I 3395177..3396493 Parvibaculum lavamentivorans DS-1 5456905 YP_001414445.1 CDS Plav_3182 NC_009719.1 3396548 3397702 R TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; KEGG: rpe:RPE_2566 lipid-A-disaccharide synthase; lipid-A-disaccharide synthase complement(3396548..3397702) Parvibaculum lavamentivorans DS-1 5455005 YP_001414446.1 CDS Plav_3183 NC_009719.1 3397732 3398607 R PFAM: protein of unknown function DUF1009; KEGG: hne:HNE_1780 hypothetical protein; hypothetical protein complement(3397732..3398607) Parvibaculum lavamentivorans DS-1 5454613 YP_001414447.1 CDS Plav_3184 NC_009719.1 3398619 3399419 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(3398619..3399419) Parvibaculum lavamentivorans DS-1 5453784 YP_001414448.1 CDS Plav_3185 NC_009719.1 3399416 3399892 R TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sme:SMc02092 probable 3R-hydroxymyristoyl-acyl carrier protein dehydratase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ complement(3399416..3399892) Parvibaculum lavamentivorans DS-1 5455172 YP_001414449.1 CDS lpxD NC_009719.1 3399927 3400988 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(3399927..3400988) Parvibaculum lavamentivorans DS-1 5454986 YP_001414450.1 CDS Plav_3187 NC_009719.1 3401036 3401629 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: rde:RD1_2594 hypothetical protein; outer membrane chaperone Skp complement(3401036..3401629) Parvibaculum lavamentivorans DS-1 5454722 YP_001414451.1 CDS Plav_3188 NC_009719.1 3401677 3404061 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: mmr:Mmar10_1388 surface antigen (D15); surface antigen (D15) complement(3401677..3404061) Parvibaculum lavamentivorans DS-1 5453573 YP_001414452.1 CDS Plav_3189 NC_009719.1 3404149 3405327 R TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: rpe:RPE_2560 putative membrane-associated zinc metalloprotease; putative membrane-associated zinc metalloprotease complement(3404149..3405327) Parvibaculum lavamentivorans DS-1 5454396 YP_001414453.1 CDS Plav_3190 NC_009719.1 3405454 3406683 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3405454..3406683) Parvibaculum lavamentivorans DS-1 5454199 YP_001414454.1 CDS Plav_3191 NC_009719.1 3406674 3407537 R PFAM: phosphatidate cytidylyltransferase; KEGG: mag:amb2493 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase complement(3406674..3407537) Parvibaculum lavamentivorans DS-1 5453597 YP_001414455.1 CDS Plav_3192 NC_009719.1 3407542 3408306 R TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: rpe:RPE_2557 undecaprenyl diphosphate synthase; undecaprenyl diphosphate synthase complement(3407542..3408306) Parvibaculum lavamentivorans DS-1 5455086 YP_001414456.1 CDS Plav_3193 NC_009719.1 3408375 3408938 R PFAM: ribosome recycling factor; KEGG: bov:BOV_1116 ribosome recycling factor; ribosome recycling factor complement(3408375..3408938) Parvibaculum lavamentivorans DS-1 5454626 YP_001414457.1 CDS pyrH NC_009719.1 3408969 3409694 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3408969..3409694) Parvibaculum lavamentivorans DS-1 5454476 YP_001414458.1 CDS Plav_3195 NC_009719.1 3409837 3410763 R TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; Translation elongation factor EFTs/EF1B dimerisation; KEGG: rle:RL2222 putative elongation factor Ts (EF-Ts); translation elongation factor Ts complement(3409837..3410763) Parvibaculum lavamentivorans DS-1 5455104 YP_001414459.1 CDS Plav_3196 NC_009719.1 3410859 3411620 R PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; 30S ribosomal protein S2 complement(3410859..3411620) Parvibaculum lavamentivorans DS-1 5453848 YP_001414460.1 CDS Plav_3197 NC_009719.1 3411842 3415261 R KEGG: bja:bll4866 DNA polymerase III alpha chain; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(3411842..3415261) Parvibaculum lavamentivorans DS-1 5454467 YP_001414461.1 CDS Plav_3198 NC_009719.1 3415542 3416714 R PFAM: protein of unknown function DUF262; KEGG: aba:Acid345_4280 hypothetical protein; hypothetical protein complement(3415542..3416714) Parvibaculum lavamentivorans DS-1 5454450 YP_001414462.1 CDS Plav_3199 NC_009719.1 3416813 3416947 R hypothetical protein complement(3416813..3416947) Parvibaculum lavamentivorans DS-1 5453645 YP_001414463.1 CDS Plav_3200 NC_009719.1 3417101 3417631 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: ret:RHE_CH00295 putative reductase protein; deaminase-reductase domain-containing protein 3417101..3417631 Parvibaculum lavamentivorans DS-1 5454770 YP_001414464.1 CDS Plav_3201 NC_009719.1 3417770 3418312 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pol:Bpro_1366 hypothetical protein; activator of Hsp90 ATPase 1 family protein 3417770..3418312 Parvibaculum lavamentivorans DS-1 5455103 YP_001414465.1 CDS Plav_3202 NC_009719.1 3418380 3418637 R hypothetical protein complement(3418380..3418637) Parvibaculum lavamentivorans DS-1 5453677 YP_001414466.1 CDS Plav_3203 NC_009719.1 3418697 3419425 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2571 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter-like protein complement(3418697..3419425) Parvibaculum lavamentivorans DS-1 5454493 YP_001414467.1 CDS Plav_3204 NC_009719.1 3419418 3420701 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: nha:Nham_2196 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein complement(3419418..3420701) Parvibaculum lavamentivorans DS-1 5454779 YP_001414468.1 CDS Plav_3205 NC_009719.1 3420724 3422043 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(3420724..3422043) Parvibaculum lavamentivorans DS-1 5454557 YP_001414469.1 CDS Plav_3206 NC_009719.1 3422136 3423836 R KEGG: bba:Bd1177 hypothetical protein; hypothetical protein complement(3422136..3423836) Parvibaculum lavamentivorans DS-1 5454707 YP_001414470.1 CDS Plav_3207 NC_009719.1 3423914 3424345 R hypothetical protein complement(3423914..3424345) Parvibaculum lavamentivorans DS-1 5454393 YP_001414471.1 CDS Plav_3208 NC_009719.1 3424432 3425742 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: maq:Maqu_2813 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 3424432..3425742 Parvibaculum lavamentivorans DS-1 5455080 YP_001414472.1 CDS Plav_3209 NC_009719.1 3426254 3426532 R PFAM: protein of unknown function DUF1467; KEGG: nha:Nham_2203 protein of unknown function DUF1467; hypothetical protein complement(3426254..3426532) Parvibaculum lavamentivorans DS-1 5453545 YP_001414473.1 CDS Plav_3210 NC_009719.1 3426565 3426969 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mag:amb2575 lactoylglutathione lyase and related lyase; methylmalonyl-CoA epimerase complement(3426565..3426969) Parvibaculum lavamentivorans DS-1 5453900 YP_001414474.1 CDS Plav_3211 NC_009719.1 3427051 3428754 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mmr:Mmar10_1371 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(3427051..3428754) Parvibaculum lavamentivorans DS-1 5455085 YP_001414475.1 CDS Plav_3212 NC_009719.1 3428764 3429522 R TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: biotin protein ligase; biotin--acetyl-CoA-carboxylase ligase complement(3428764..3429522) Parvibaculum lavamentivorans DS-1 5454994 YP_001414476.1 CDS Plav_3213 NC_009719.1 3429530 3430981 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bov:BOV_0810 NADH dehydrogenase I, N subunit; proton-translocating NADH-quinone oxidoreductase subunit N complement(3429530..3430981) Parvibaculum lavamentivorans DS-1 5454765 YP_001414477.1 CDS Plav_3214 NC_009719.1 3431006 3432550 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mlo:mll1354 NADH dehydrogenase I chain M; proton-translocating NADH-quinone oxidoreductase subunit M complement(3431006..3432550) Parvibaculum lavamentivorans DS-1 5454633 YP_001414478.1 CDS Plav_3215 NC_009719.1 3432550 3434481 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); KEGG: mlo:mll1355 NADH dehydrogenase I chain L; proton-translocating NADH-quinone oxidoreductase subunit L complement(3432550..3434481) Parvibaculum lavamentivorans DS-1 5453653 YP_001414479.1 CDS Plav_3216 NC_009719.1 3434487 3434795 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: mlo:mll1357 NADH dehydrogenase I chain K; NADH-ubiquinone oxidoreductase chain 4L complement(3434487..3434795) Parvibaculum lavamentivorans DS-1 5453511 YP_001414480.1 CDS Plav_3217 NC_009719.1 3434899 3435513 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: mes:Meso_1031 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(3434899..3435513) Parvibaculum lavamentivorans DS-1 5454155 YP_001414481.1 CDS Plav_3218 NC_009719.1 3435534 3436025 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(3435534..3436025) Parvibaculum lavamentivorans DS-1 5454321 YP_001414482.1 CDS Plav_3219 NC_009719.1 3436066 3437079 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(3436066..3437079) Parvibaculum lavamentivorans DS-1 5454164 YP_001414483.1 CDS Plav_3220 NC_009719.1 3437090 3439132 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(3437090..3439132) Parvibaculum lavamentivorans DS-1 5454103 YP_001414484.1 CDS Plav_3221 NC_009719.1 3439138 3440427 R part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F complement(3439138..3440427) Parvibaculum lavamentivorans DS-1 5453659 YP_001414485.1 CDS Plav_3222 NC_009719.1 3440427 3441053 R TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: bbt:BBta_4558 NADH-quinone oxidoreductase chain E; NADH-quinone oxidoreductase subunit E complement(3440427..3441053) Parvibaculum lavamentivorans DS-1 5454002 YP_001414486.1 CDS Plav_3223 NC_009719.1 3441050 3442228 R TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: bbt:BBta_4560 NADH-quinone oxidoreductase chain D; NADH dehydrogenase I subunit D complement(3441050..3442228) Parvibaculum lavamentivorans DS-1 5453987 YP_001414487.1 CDS Plav_3224 NC_009719.1 3442232 3442834 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(3442232..3442834) Parvibaculum lavamentivorans DS-1 5454001 YP_001414488.1 CDS Plav_3225 NC_009719.1 3442905 3443480 R TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: ret:RHE_CH01603 NADH-ubiquinone oxidoreductase chain B protein; NADH-quinone oxidoreductase subunit B complement(3442905..3443480) Parvibaculum lavamentivorans DS-1 5453450 YP_001414489.1 CDS Plav_3226 NC_009719.1 3443471 3443836 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: mes:Meso_1022 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 complement(3443471..3443836) Parvibaculum lavamentivorans DS-1 5453721 YP_001414490.1 CDS Plav_3228 NC_009719.1 3444535 3445818 D PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_2864 twin-arginine translocation pathway signal; major facilitator superfamily transporter 3444535..3445818 Parvibaculum lavamentivorans DS-1 5455093 YP_001414491.1 CDS Plav_3229 NC_009719.1 3445897 3446172 R PFAM: histone family protein DNA-binding protein; KEGG: rru:Rru_A1553 histone-like DNA-binding protein; histone family DNA-binding protein complement(3445897..3446172) Parvibaculum lavamentivorans DS-1 5453479 YP_001414492.1 CDS Plav_3230 NC_009719.1 3446359 3448815 R KEGG: bme:BMEI0876 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(3446359..3448815) Parvibaculum lavamentivorans DS-1 5454516 YP_001414493.1 CDS clpX NC_009719.1 3449102 3450367 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3449102..3450367) Parvibaculum lavamentivorans DS-1 5455069 YP_001414494.1 CDS Plav_3232 NC_009719.1 3450688 3451329 R PFAM: peptidase S14 ClpP; KEGG: rpa:RPA2961 ATP-dependent Clp protease proteolytic subunit; endopeptidase Clp complement(3450688..3451329) Parvibaculum lavamentivorans DS-1 5454063 YP_001414495.1 CDS Plav_3233 NC_009719.1 3451544 3452110 R PFAM: GCN5-related N-acetyltransferase; KEGG: bms:BR1560 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3451544..3452110) Parvibaculum lavamentivorans DS-1 5453932 YP_001414496.1 CDS Plav_3234 NC_009719.1 3452164 3453465 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mag:amb1388 diaminopimelate decarboxylase; Orn/DAP/Arg decarboxylase 2 complement(3452164..3453465) Parvibaculum lavamentivorans DS-1 5456678 YP_001414497.1 CDS tig NC_009719.1 3453756 3455294 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3453756..3455294) Parvibaculum lavamentivorans DS-1 5453523 YP_001414498.1 CDS Plav_3236 NC_009719.1 3455535 3457067 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: rpa:RPA2965 hypothetical protein; carbohydrate kinase complement(3455535..3457067) Parvibaculum lavamentivorans DS-1 5454739 YP_001414499.1 CDS Plav_3237 NC_009719.1 3457100 3457681 R PFAM: Phosphoglycerate mutase; KEGG: hne:HNE_2081 phosphoglycerate mutase family protein; phosphoglycerate mutase complement(3457100..3457681) Parvibaculum lavamentivorans DS-1 5455708 YP_001414500.1 CDS Plav_3238 NC_009719.1 3457809 3458171 D KEGG: aeh:Mlg_2138 hypothetical protein; hypothetical protein 3457809..3458171 Parvibaculum lavamentivorans DS-1 5455723 YP_001414501.1 CDS Plav_3239 NC_009719.1 3458229 3458774 R KEGG: ret:RHE_CH02285 hypothetical protein; hypothetical protein complement(3458229..3458774) Parvibaculum lavamentivorans DS-1 5455999 YP_001414502.1 CDS Plav_3240 NC_009719.1 3458985 3460538 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3458985..3460538) Parvibaculum lavamentivorans DS-1 5456551 YP_001414503.1 CDS Plav_3241 NC_009719.1 3460648 3461316 R PFAM: phospholipase/Carboxylesterase; KEGG: rsh:Rsph17029_1386 phospholipase/carboxylesterase; phospholipase/carboxylesterase complement(3460648..3461316) Parvibaculum lavamentivorans DS-1 5454706 YP_001414504.1 CDS Plav_3242 NC_009719.1 3461313 3462491 R PFAM: aminotransferase class I and II; KEGG: acr:Acry_3059 aminotransferase, class I and II; class I/II aminotransferase complement(3461313..3462491) Parvibaculum lavamentivorans DS-1 5455479 YP_001414505.1 CDS Plav_3243 NC_009719.1 3462816 3463154 D PFAM: nitrogen regulatory protein P-II; KEGG: mes:Meso_1545 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3462816..3463154 Parvibaculum lavamentivorans DS-1 5456065 YP_001414506.1 CDS Plav_3244 NC_009719.1 3463280 3464686 D TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sme:SMc00948 glutamine synthetase I protein; glutamine synthetase 3463280..3464686 Parvibaculum lavamentivorans DS-1 5456377 YP_001414507.1 CDS Plav_3245 NC_009719.1 3465305 3465856 D KEGG: lpn:lpg1213 hypothetical protein; hypothetical protein 3465305..3465856 Parvibaculum lavamentivorans DS-1 5456654 YP_001414508.1 CDS Plav_3246 NC_009719.1 3465851 3467371 R TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: psa:PST_2511 di- and tricarboxylate transporter; anion transporter complement(3465851..3467371) Parvibaculum lavamentivorans DS-1 5456751 YP_001414509.1 CDS Plav_3247 NC_009719.1 3467386 3468693 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: hch:HCH_01469 NADH:flavin oxidoreductase, Old Yellow enzyme family; NADH:flavin oxidoreductase complement(3467386..3468693) Parvibaculum lavamentivorans DS-1 5456487 YP_001414510.1 CDS Plav_3248 NC_009719.1 3468828 3469484 D PFAM: Protein of unknown function YqcI/YcgG; KEGG: rru:Rru_A3044 hypothetical protein; hypothetical protein 3468828..3469484 Parvibaculum lavamentivorans DS-1 5455899 YP_001414511.1 CDS Plav_3249 NC_009719.1 3469460 3470080 D KEGG: rru:Rru_A3045 hypothetical protein; hypothetical protein 3469460..3470080 Parvibaculum lavamentivorans DS-1 5455726 YP_001414512.1 CDS Plav_3250 NC_009719.1 3470183 3472222 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3470183..3472222 Parvibaculum lavamentivorans DS-1 5456966 YP_001414513.1 CDS Plav_3251 NC_009719.1 3472219 3473352 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rru:Rru_A3213 PAS/PAC sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3472219..3473352) Parvibaculum lavamentivorans DS-1 5456718 YP_001414514.1 CDS Plav_3252 NC_009719.1 3473701 3475215 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rsh:Rsph17029_1195 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 3473701..3475215 Parvibaculum lavamentivorans DS-1 5454362 YP_001414515.1 CDS Plav_3253 NC_009719.1 3475284 3476747 R PFAM: aldehyde dehydrogenase; KEGG: probable coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase complement(3475284..3476747) Parvibaculum lavamentivorans DS-1 5455798 YP_001414516.1 CDS Plav_3254 NC_009719.1 3477067 3478122 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mmr:Mmar10_1323 diguanylate cyclase; diguanylate cyclase 3477067..3478122 Parvibaculum lavamentivorans DS-1 5456016 YP_001414517.1 CDS Plav_3255 NC_009719.1 3478268 3479059 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: azo:azo0300 probable enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 3478268..3479059 Parvibaculum lavamentivorans DS-1 5456183 YP_001414518.1 CDS Plav_3256 NC_009719.1 3479096 3479887 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3479096..3479887 Parvibaculum lavamentivorans DS-1 5454086 YP_001414519.1 CDS Plav_3257 NC_009719.1 3480074 3480433 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: nwi:Nwi_1659 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein complement(3480074..3480433) Parvibaculum lavamentivorans DS-1 5454639 YP_001414520.1 CDS Plav_3258 NC_009719.1 3480445 3480837 R TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: mlo:mlr0023 hypothetical protein; FeS assembly SUF system protein complement(3480445..3480837) Parvibaculum lavamentivorans DS-1 5454107 YP_001414521.1 CDS Plav_3259 NC_009719.1 3480848 3482092 R TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mes:Meso_1778 cysteine desulfurases, SufS subfamily; SufS subfamily cysteine desulfurase complement(3480848..3482092) Parvibaculum lavamentivorans DS-1 5455053 YP_001414522.1 CDS Plav_3260 NC_009719.1 3482089 3483402 R TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: nwi:Nwi_1662 FeS assembly protein SufD; FeS assembly protein SufD complement(3482089..3483402) Parvibaculum lavamentivorans DS-1 5454323 YP_001414523.1 CDS Plav_3261 NC_009719.1 3483411 3484160 R TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0437 Suf C, ATPase; FeS assembly ATPase SufC complement(3483411..3484160) Parvibaculum lavamentivorans DS-1 5453909 YP_001414524.1 CDS Plav_3262 NC_009719.1 3484185 3485633 R TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bbt:BBta_3966 transport protein associated with Fe-S cluster assembly, SufB; FeS assembly protein SufB complement(3484185..3485633) Parvibaculum lavamentivorans DS-1 5456908 YP_001414525.1 CDS Plav_3263 NC_009719.1 3485635 3486837 R PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb3029 cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme; class V aminotransferase complement(3485635..3486837) Parvibaculum lavamentivorans DS-1 5455603 YP_001414526.1 CDS Plav_3264 NC_009719.1 3486875 3487369 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rru:Rru_A2028 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(3486875..3487369) Parvibaculum lavamentivorans DS-1 5455288 YP_001414527.1 CDS Plav_3265 NC_009719.1 3487663 3488319 D KEGG: rpe:RPE_2970 hypothetical protein; hypothetical protein 3487663..3488319 Parvibaculum lavamentivorans DS-1 5456045 YP_001414528.1 CDS anmK NC_009719.1 3488320 3489438 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(3488320..3489438) Parvibaculum lavamentivorans DS-1 5457015 YP_001414529.1 CDS Plav_3267 NC_009719.1 3489522 3490772 D TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; KEGG: ret:RHE_CH02258 tyrosyl-tRNA synthetase protein; tyrosyl-tRNA synthetase 3489522..3490772 Parvibaculum lavamentivorans DS-1 5456290 YP_001414530.1 CDS Plav_3268 NC_009719.1 3490894 3492030 R KEGG: abo:ABO_1416 hypothetical protein; hypothetical protein complement(3490894..3492030) Parvibaculum lavamentivorans DS-1 5455793 YP_001414531.1 CDS Plav_3269 NC_009719.1 3492120 3495629 R KEGG: mag:amb2682 hypothetical protein; hypothetical protein complement(3492120..3495629) Parvibaculum lavamentivorans DS-1 5456095 YP_001414532.1 CDS Plav_3270 NC_009719.1 3495827 3496333 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bbt:BBta_3956 hypothetical protein; alkyl hydroperoxide reductase 3495827..3496333 Parvibaculum lavamentivorans DS-1 5454842 YP_001414533.1 CDS Plav_3271 NC_009719.1 3496337 3497152 D PFAM: protein of unknown function DUF455; KEGG: sal:Sala_2183 protein of unknown function DUF455; hypothetical protein 3496337..3497152 Parvibaculum lavamentivorans DS-1 5454605 YP_001414534.1 CDS Plav_3272 NC_009719.1 3497284 3498663 D PFAM: peptidase M23B; KEGG: mmr:Mmar10_1304 peptidase M23B; peptidase M23B 3497284..3498663 Parvibaculum lavamentivorans DS-1 5454120 YP_001414535.1 CDS Plav_3273 NC_009719.1 3498641 3499234 D PFAM: protein of unknown function DUF583; KEGG: mmr:Mmar10_1303 protein of unknown function DUF583; hypothetical protein 3498641..3499234 Parvibaculum lavamentivorans DS-1 5454867 YP_001414536.1 CDS Plav_3274 NC_009719.1 3499679 3500869 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hypothetical protein; hypothetical protein complement(3499679..3500869) Parvibaculum lavamentivorans DS-1 5454577 YP_001414537.1 CDS Plav_3275 NC_009719.1 3501176 3502144 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: atc:AGR_C_2479 peptide chain release factor RF-2; peptide chain release factor 2 complement(3501176..3502144) Parvibaculum lavamentivorans DS-1 5455018 YP_001414538.1 CDS Plav_3276 NC_009719.1 3502668 3505394 R TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: bme:BMEI1055 penicillin-binding protein 1A; 1A family penicillin-binding protein complement(3502668..3505394) Parvibaculum lavamentivorans DS-1 5453923 YP_001414539.1 CDS Plav_3277 NC_009719.1 3505612 3507066 R PFAM: cell wall hydrolase/autolysin; KEGG: rpe:RPE_2978 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(3505612..3507066) Parvibaculum lavamentivorans DS-1 5453685 YP_001414540.1 CDS Plav_3278 NC_009719.1 3507917 3510508 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: sme:SMc01336 probable ribonuclease E protein; ribonuclease 3507917..3510508 Parvibaculum lavamentivorans DS-1 5454497 YP_001414541.1 CDS Plav_3279 NC_009719.1 3510589 3512100 R PFAM: gamma-glutamyltranspeptidase; KEGG: acr:Acry_1628 gamma-glutamyltranspeptidase; gamma-glutamyltranspeptidase complement(3510589..3512100) Parvibaculum lavamentivorans DS-1 5453755 YP_001414542.1 CDS Plav_3280 NC_009719.1 3512324 3513682 D PFAM: TPR repeat-containing protein; peptidase M48 Ste24p; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:bll4295 hypothetical protein; peptidase M48 Ste24p 3512324..3513682 Parvibaculum lavamentivorans DS-1 5455217 YP_001414543.1 CDS Plav_3281 NC_009719.1 3513721 3514512 D PFAM: DSBA oxidoreductase; KEGG: mag:amb1392 protein-disulfide isomerase; DSBA oxidoreductase 3513721..3514512 Parvibaculum lavamentivorans DS-1 5455224 YP_001414544.1 CDS Plav_3282 NC_009719.1 3514574 3515560 D PFAM: fatty acid desaturase; KEGG: nha:Nham_2541 fatty acid desaturase; fatty acid desaturase 3514574..3515560 Parvibaculum lavamentivorans DS-1 5454878 YP_001414545.1 CDS Plav_3283 NC_009719.1 3515647 3516678 D PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: bbr:BB1929 fructose-1,6-bisphosphatase; inositol phosphatase/fructose-16-bisphosphatase 3515647..3516678 Parvibaculum lavamentivorans DS-1 5455347 YP_001414546.1 CDS Plav_3284 NC_009719.1 3516691 3517986 R KEGG: ppu:PP_3329 hypothetical protein; hypothetical protein complement(3516691..3517986) Parvibaculum lavamentivorans DS-1 5454057 YP_001414547.1 CDS Plav_3285 NC_009719.1 3517983 3518465 R KEGG: rsq:Rsph17025_2827 membrane protein-like protein; membrane protein complement(3517983..3518465) Parvibaculum lavamentivorans DS-1 5455435 YP_001414548.1 CDS Plav_3286 NC_009719.1 3518642 3519178 D KEGG: pau:PA14_36930 hypothetical protein; hypothetical protein 3518642..3519178 Parvibaculum lavamentivorans DS-1 5455573 YP_001414549.1 CDS Plav_3287 NC_009719.1 3519188 3519637 D KEGG: psb:Psyr_0769 conserved hypothetical membrane-anchored protein; hypothetical protein 3519188..3519637 Parvibaculum lavamentivorans DS-1 5455660 YP_001414550.1 CDS thiG NC_009719.1 3519650 3520462 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(3519650..3520462) Parvibaculum lavamentivorans DS-1 5455827 YP_001414551.1 CDS Plav_3289 NC_009719.1 3520488 3520688 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: thiamin biosynthesis ThiS; K03154 thiamine biosynthesis ThiS; thiamine biosynthesis protein ThiS complement(3520488..3520688) Parvibaculum lavamentivorans DS-1 5455856 YP_001414552.1 CDS Plav_3290 NC_009719.1 3520964 3521422 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3520964..3521422 Parvibaculum lavamentivorans DS-1 5456167 YP_001414553.1 CDS Plav_3291 NC_009719.1 3521439 3521948 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rpd:RPD_2432 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 3521439..3521948 Parvibaculum lavamentivorans DS-1 5456279 YP_001414554.1 CDS Plav_3292 NC_009719.1 3521965 3523308 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: mlo:mll0203 biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 3521965..3523308 Parvibaculum lavamentivorans DS-1 5455539 YP_001414555.1 CDS Plav_3293 NC_009719.1 3523350 3525320 D PFAM: AsmA family protein; KEGG: gbe:GbCGDNIH1_0797 AsmA family protein; AsmA family protein 3523350..3525320 Parvibaculum lavamentivorans DS-1 5456625 YP_001414556.1 CDS Plav_3294 NC_009719.1 3525320 3526069 D PFAM: leucyl/phenylalanyl-tRNA--protein transferase; KEGG: mmr:Mmar10_1264 leucyltransferase; leucyltransferase 3525320..3526069 Parvibaculum lavamentivorans DS-1 5456732 YP_001414557.1 CDS Plav_3295 NC_009719.1 3526006 3526413 R KEGG: mes:Meso_1718 cellulase-like protein; cellulase-like protein complement(3526006..3526413) Parvibaculum lavamentivorans DS-1 5456064 YP_001414558.1 CDS Plav_3296 NC_009719.1 3526417 3526911 R PFAM: Mammalian cell entry related domain protein; KEGG: mag:amb2743 ABC-type transport system involved in resistance to organic solvents, periplasmic component; hypothetical protein complement(3526417..3526911) Parvibaculum lavamentivorans DS-1 5455645 YP_001414559.1 CDS Plav_3297 NC_009719.1 3526961 3527359 R PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: rpd:RPD_2418 NADH:ubiquinone oxidoreductase 17.2 kD subunit; NADH:ubiquinone oxidoreductase 17.2 kD subunit complement(3526961..3527359) Parvibaculum lavamentivorans DS-1 5455658 YP_001414560.1 CDS Plav_3298 NC_009719.1 3527468 3528154 R PFAM: response regulator receiver; KEGG: chemotaxis protein CheYIII; response regulator receiver protein complement(3527468..3528154) Parvibaculum lavamentivorans DS-1 5455872 YP_001414561.1 CDS Plav_3299 NC_009719.1 3528390 3532124 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3528390..3532124 Parvibaculum lavamentivorans DS-1 5455878 YP_001414562.1 CDS Plav_3300 NC_009719.1 3532587 3533615 R hypothetical protein complement(3532587..3533615) Parvibaculum lavamentivorans DS-1 5455668 YP_001414563.1 CDS Plav_3301 NC_009719.1 3533733 3534266 D PFAM: beta-Ig-H3/fasciclin; KEGG: rde:RD1_3293 hypothetical protein; beta-Ig-H3/fasciclin 3533733..3534266 Parvibaculum lavamentivorans DS-1 5456331 YP_001414564.1 CDS aspS NC_009719.1 3534351 3536174 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(3534351..3536174) Parvibaculum lavamentivorans DS-1 5456485 YP_001414565.1 CDS Plav_3303 NC_009719.1 3536445 3537614 D PFAM: acyltransferase 3; KEGG: bam:Bamb_3359 acyltransferase 3; acyltransferase 3 3536445..3537614 Parvibaculum lavamentivorans DS-1 5456588 YP_001414566.1 CDS Plav_3304 NC_009719.1 3537745 3539589 D KEGG: sus:Acid_6600 hypothetical protein; hypothetical protein 3537745..3539589 Parvibaculum lavamentivorans DS-1 5456481 YP_001414567.1 CDS Plav_3305 NC_009719.1 3539735 3540304 D TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: rpa:RPA0118 dTDP-6-deoxy-D-glucose-3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase 3539735..3540304 Parvibaculum lavamentivorans DS-1 5456663 YP_001414568.1 CDS Plav_3306 NC_009719.1 3540358 3541428 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rpd:RPD_1571 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 3540358..3541428 Parvibaculum lavamentivorans DS-1 5456830 YP_001414569.1 CDS Plav_3308 NC_009719.1 3541780 3542682 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mca:MCA1283 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 3541780..3542682 Parvibaculum lavamentivorans DS-1 5456839 YP_001414570.1 CDS Plav_3309 NC_009719.1 3542779 3543723 D PFAM: glycosyl transferase family 2; KEGG: oih:OB2419 hypothetical protein; glycosyl transferase family protein 3542779..3543723 Parvibaculum lavamentivorans DS-1 5455799 YP_001414571.1 CDS Plav_3310 NC_009719.1 3543717 3544364 D KEGG: neu:NE2172 SAM (and some other nucleotide) binding motif; SAM-binding motif-containing protein 3543717..3544364 Parvibaculum lavamentivorans DS-1 5456216 YP_001414572.1 CDS Plav_3311 NC_009719.1 3544364 3545029 D PFAM: transferase hexapeptide repeat containing protein; KEGG: mbb:BCG_1568c hypothetical protein; hexapaptide repeat-containing transferase 3544364..3545029 Parvibaculum lavamentivorans DS-1 5456671 YP_001414573.1 CDS Plav_3312 NC_009719.1 3545137 3545835 R PFAM: WbqC-like family protein; KEGG: neu:NE2176 hypothetical protein; WbqC-like family protein complement(3545137..3545835) Parvibaculum lavamentivorans DS-1 5455127 YP_001414574.1 CDS Plav_3313 NC_009719.1 3545832 3547391 R KEGG: neu:NE2177 hypothetical protein; hypothetical protein complement(3545832..3547391) Parvibaculum lavamentivorans DS-1 5455399 YP_001414575.1 CDS Plav_3314 NC_009719.1 3547417 3548688 R KEGG: rsp:RSP_3985 hypothetical protein; hypothetical protein complement(3547417..3548688) Parvibaculum lavamentivorans DS-1 5456181 YP_001414576.1 CDS Plav_3315 NC_009719.1 3548879 3551284 D KEGG: rle:RL0805 putative transmembrane protein; hypothetical protein 3548879..3551284 Parvibaculum lavamentivorans DS-1 5456149 YP_001414577.1 CDS Plav_3316 NC_009719.1 3551316 3552140 D PFAM: Phytanoyl-CoA dioxygenase; KEGG: rle:RL0802 putative deoxygenase; phytanoyl-CoA dioxygenase 3551316..3552140 Parvibaculum lavamentivorans DS-1 5453899 YP_001414578.1 CDS Plav_3317 NC_009719.1 3552133 3553074 R KEGG: mtf:TBFG_11533 hypothetical protein; hypothetical protein complement(3552133..3553074) Parvibaculum lavamentivorans DS-1 5454678 YP_001414579.1 CDS Plav_3318 NC_009719.1 3553258 3554409 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rle:RL0803 hypothetical protein; type 12 methyltransferase 3553258..3554409 Parvibaculum lavamentivorans DS-1 5454061 YP_001414580.1 CDS Plav_3319 NC_009719.1 3554430 3555353 R PFAM: glycosyl transferase family 2; KEGG: chu:CHU_2999 b-glycosyltransferase, glycosyltransferase family 2 protein; glycosyl transferase family protein complement(3554430..3555353) Parvibaculum lavamentivorans DS-1 5454571 YP_001414581.1 CDS Plav_3320 NC_009719.1 3555397 3556533 R catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase complement(3555397..3556533) Parvibaculum lavamentivorans DS-1 5454862 YP_001414582.1 CDS Plav_3321 NC_009719.1 3556642 3557256 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bra:BRADO0169 hypothetical protein; putative methyl transferase; type 12 methyltransferase complement(3556642..3557256) Parvibaculum lavamentivorans DS-1 5453386 YP_001414583.1 CDS Plav_3322 NC_009719.1 3557267 3558223 R PFAM: putative methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: nmu:Nmul_A0287 generic methyltransferase; type 12 methyltransferase complement(3557267..3558223) Parvibaculum lavamentivorans DS-1 5454981 YP_001414584.1 CDS Plav_3323 NC_009719.1 3558280 3558651 R KEGG: oih:OB2417 hypothetical protein; hypothetical protein complement(3558280..3558651) Parvibaculum lavamentivorans DS-1 5455063 YP_001414585.1 CDS Plav_3324 NC_009719.1 3558837 3560120 D TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mag:amb2836 ribonuclease D; ribonuclease D 3558837..3560120 Parvibaculum lavamentivorans DS-1 5453409 YP_001414586.1 CDS Plav_3325 NC_009719.1 3560165 3561661 R PFAM: Ppx/GppA phosphatase; KEGG: mlo:mlr8162 exopolyphosphatase; Ppx/GppA phosphatase complement(3560165..3561661) Parvibaculum lavamentivorans DS-1 5454096 YP_001414587.1 CDS Plav_3326 NC_009719.1 3561695 3563902 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(3561695..3563902) Parvibaculum lavamentivorans DS-1 5453965 YP_001414588.1 CDS Plav_3327 NC_009719.1 3564040 3564441 D hypothetical protein 3564040..3564441 Parvibaculum lavamentivorans DS-1 5455186 YP_001414589.1 CDS Plav_3328 NC_009719.1 3564438 3565118 R PFAM: Chromosomal replication initiator DnaA; KEGG: nha:Nham_2116 hypothetical protein; chromosomal replication initiator DnaA complement(3564438..3565118) Parvibaculum lavamentivorans DS-1 5455175 YP_001414590.1 CDS Plav_3329 NC_009719.1 3565121 3566218 R PFAM: protein of unknown function UPF0118; KEGG: rsh:Rsph17029_2435 protein of unknown function UPF0118; hypothetical protein complement(3565121..3566218) Parvibaculum lavamentivorans DS-1 5454484 YP_001414591.1 CDS Plav_3330 NC_009719.1 3566239 3567357 R KEGG: mag:amb2845 hypothetical protein; hypothetical protein complement(3566239..3567357) Parvibaculum lavamentivorans DS-1 5454965 YP_001414592.1 CDS Plav_3331 NC_009719.1 3567551 3568642 D TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: atc:AGR_C_2111 5'-phosphoribosyl-5-aminoimidazole synthetase; phosphoribosylformylglycinamidine cyclo-ligase 3567551..3568642 Parvibaculum lavamentivorans DS-1 5455524 YP_001414593.1 CDS Plav_3332 NC_009719.1 3568639 3569283 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: rru:Rru_A2168 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 3568639..3569283 Parvibaculum lavamentivorans DS-1 5455408 YP_001414594.1 CDS Plav_3333 NC_009719.1 3569344 3569766 R PFAM: nucleoside diphosphate kinase; KEGG: swi:Swit_0030 nucleoside-diphosphate kinase; nucleoside-diphosphate kinase complement(3569344..3569766) Parvibaculum lavamentivorans DS-1 5456925 YP_001414595.1 CDS Plav_3334 NC_009719.1 3569861 3571774 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_1754 ABC transporter related; ABC transporter-like protein 3569861..3571774 Parvibaculum lavamentivorans DS-1 5455703 YP_001414596.1 CDS Plav_3335 NC_009719.1 3571915 3572850 R PFAM: beta-lactamase domain protein; KEGG: nar:Saro_1798 beta-lactamase-like; beta-lactamase domain-containing protein complement(3571915..3572850) Parvibaculum lavamentivorans DS-1 5455680 YP_001414597.1 CDS Plav_3336 NC_009719.1 3572950 3573399 R PFAM: DNA polymerase III chi subunit HolC; KEGG: atc:AGR_C_2056 putative DNA polymerase III chi subunit; DNA polymerase III chi subunit HolC complement(3572950..3573399) Parvibaculum lavamentivorans DS-1 5455720 YP_001414598.1 CDS Plav_3337 NC_009719.1 3573411 3574904 R PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: rpc:RPC_2314 leucyl aminopeptidase; leucyl aminopeptidase complement(3573411..3574904) Parvibaculum lavamentivorans DS-1 5455769 YP_001414599.1 CDS Plav_3338 NC_009719.1 3575217 3576383 D PFAM: permease YjgP/YjgQ family protein; KEGG: hypothetical protein; YjgP/YjgQ family permease 3575217..3576383 Parvibaculum lavamentivorans DS-1 5455803 YP_001414600.1 CDS Plav_3339 NC_009719.1 3576380 3577471 D PFAM: permease YjgP/YjgQ family protein; KEGG: mag:amb3906 predicted permease; YjgP/YjgQ family permease 3576380..3577471 Parvibaculum lavamentivorans DS-1 5455779 YP_001414601.1 CDS Plav_3340 NC_009719.1 3577530 3579761 D PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: bbt:BBta_3829 putative organic solvent tolerance protein OstA (ImpA); organic solvent tolerance protein 3577530..3579761 Parvibaculum lavamentivorans DS-1 5455640 YP_001414602.1 CDS Plav_3341 NC_009719.1 3579902 3581233 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: peptidyl-prolyl cis-trans isomerase family protein; SurA domain-containing protein 3579902..3581233 Parvibaculum lavamentivorans DS-1 5456053 YP_001414603.1 CDS Plav_3342 NC_009719.1 3581274 3582296 D TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: mag:amb3717 pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase 3581274..3582296 Parvibaculum lavamentivorans DS-1 5456171 YP_001414604.1 CDS Plav_3343 NC_009719.1 3582293 3583138 D TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: sit:TM1040_0944 dimethyladenosine transferase; dimethyladenosine transferase 3582293..3583138 Parvibaculum lavamentivorans DS-1 5456263 YP_001414605.1 CDS Plav_3344 NC_009719.1 3583257 3584081 D PFAM: glycosyl transferase family 2; KEGG: sit:TM1040_0077 glycosyl transferase, family 2; glycosyl transferase family protein 3583257..3584081 Parvibaculum lavamentivorans DS-1 5456510 YP_001414606.1 CDS Plav_3345 NC_009719.1 3584194 3585243 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll4101 putative NAD-dependent alcohol dehydrogenase; alcohol dehydrogenase 3584194..3585243 Parvibaculum lavamentivorans DS-1 5454789 YP_001414607.1 CDS Plav_3346 NC_009719.1 3585324 3586088 R PFAM: Cephalosporin hydroxylase; KEGG: cbo:CBO2712 hydroxylase; cephalosporin hydroxylase complement(3585324..3586088) Parvibaculum lavamentivorans DS-1 5456191 YP_001414608.1 CDS Plav_3347 NC_009719.1 3586098 3587270 R KEGG: cbo:CBO2713 methyltransferase; methyltransferase complement(3586098..3587270) Parvibaculum lavamentivorans DS-1 5455780 YP_001414609.1 CDS Plav_3348 NC_009719.1 3587275 3588183 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: sat:SYN_02652 CDP-4-dehydro-6-deoxy-D-gulose 4-reductase; NAD-dependent epimerase/dehydratase complement(3587275..3588183) Parvibaculum lavamentivorans DS-1 5456800 YP_001414610.1 CDS Plav_3349 NC_009719.1 3588274 3589137 R PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_2382 glycosyl transferase, family 2; glycosyl transferase family protein complement(3588274..3589137) Parvibaculum lavamentivorans DS-1 5453937 YP_001414611.1 CDS Plav_3350 NC_009719.1 3589148 3590350 R PFAM: Methyltransferase type 11; Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; KEGG: vei:Veis_4417 C-methyltransferase; C-methyltransferase complement(3589148..3590350) Parvibaculum lavamentivorans DS-1 5453657 YP_001414612.1 CDS Plav_3351 NC_009719.1 3590380 3590934 R PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: sme:SMb21428 putative dTDP-4-dehydrorhamnose 3,5-epimerase protein; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3590380..3590934) Parvibaculum lavamentivorans DS-1 5455082 YP_001414613.1 CDS Plav_3352 NC_009719.1 3590931 3592019 R TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sme:SMb21417 putative CDP-glucose 4,6-dehydratase protein; CDP-glucose 4,6-dehydratase complement(3590931..3592019) Parvibaculum lavamentivorans DS-1 5453924 YP_001414614.1 CDS Plav_3353 NC_009719.1 3592020 3592799 R TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sme:SMb21416 putative glucose-1-phosphate cytidylyltransferase protein; glucose-1-phosphate cytidylyltransferase complement(3592020..3592799) Parvibaculum lavamentivorans DS-1 5454637 YP_001414615.1 CDS gmk NC_009719.1 3592812 3593450 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(3592812..3593450) Parvibaculum lavamentivorans DS-1 5454395 YP_001414616.1 CDS Plav_3355 NC_009719.1 3593457 3594344 R PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: rru:Rru_A0428 hypothetical protein; hypothetical protein complement(3593457..3594344) Parvibaculum lavamentivorans DS-1 5453913 YP_001414617.1 CDS Plav_3356 NC_009719.1 3594404 3595453 R PFAM: aminodeoxychorismate lyase; KEGG: mes:Meso_1765 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(3594404..3595453) Parvibaculum lavamentivorans DS-1 5454053 YP_001414618.1 CDS Plav_3357 NC_009719.1 3595450 3596706 R PFAM: Beta-ketoacyl synthase; KEGG: bbt:BBta_3820 3-oxoacyl-(acyl-carrier-protein) synthase II; beta-ketoacyl synthase complement(3595450..3596706) Parvibaculum lavamentivorans DS-1 5454654 YP_001414619.1 CDS Plav_3358 NC_009719.1 3596808 3597047 R TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: mag:amb2107 acyl carrier protein; acyl carrier protein complement(3596808..3597047) Parvibaculum lavamentivorans DS-1 5453959 YP_001414620.1 CDS Plav_3359 NC_009719.1 3597305 3598042 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mag:amb2106 dehydrogenase with different specificities; 3-oxoacyl-(acyl-carrier-protein) reductase complement(3597305..3598042) Parvibaculum lavamentivorans DS-1 5454782 YP_001414621.1 CDS Plav_3360 NC_009719.1 3598058 3598999 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: mag:amb2105 S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase complement(3598058..3598999) Parvibaculum lavamentivorans DS-1 5455260 YP_001414622.1 CDS Plav_3361 NC_009719.1 3599338 3599805 D PFAM: ribosomal protein S6; KEGG: mlo:mll7846 30S ribosomal protein S6; 30S ribosomal protein S6 3599338..3599805 Parvibaculum lavamentivorans DS-1 5455294 YP_001414623.1 CDS Plav_3362 NC_009719.1 3599805 3600050 D PFAM: ribosomal protein S18; KEGG: 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18; 30S ribosomal protein S18 3599805..3600050 Parvibaculum lavamentivorans DS-1 5455361 YP_001414624.1 CDS Plav_3363 NC_009719.1 3600073 3600678 D PFAM: ribosomal protein L9; KEGG: bov:BOV_0458 ribosomal protein L9; 50S ribosomal protein L9 3600073..3600678 Parvibaculum lavamentivorans DS-1 5455440 YP_001414625.1 CDS Plav_3364 NC_009719.1 3600803 3602587 D KEGG: rpe:RPE_2456 hypothetical protein; hypothetical protein 3600803..3602587 Parvibaculum lavamentivorans DS-1 5454701 YP_001414626.1 CDS Plav_3365 NC_009719.1 3602779 3603144 R KEGG: sme:SMa1644 hypothetical protein; hypothetical protein complement(3602779..3603144) Parvibaculum lavamentivorans DS-1 5455570 YP_001414627.1 CDS Plav_3366 NC_009719.1 3603470 3604264 R PFAM: UspA domain protein; KEGG: sal:Sala_2574 UspA; UspA domain-containing protein complement(3603470..3604264) Parvibaculum lavamentivorans DS-1 5456901 YP_001414628.1 CDS Plav_3367 NC_009719.1 3604412 3606841 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_7296 cadmium-exporting ATPase; heavy metal translocating P-type ATPase complement(3604412..3606841) Parvibaculum lavamentivorans DS-1 5455496 YP_001414629.1 CDS Plav_3368 NC_009719.1 3607042 3608070 D KEGG: pna:Pnap_2858 insertion element protein; insertion element protein 3607042..3608070 Parvibaculum lavamentivorans DS-1 5455648 YP_001414630.1 CDS Plav_3369 NC_009719.1 3608183 3611365 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_4533 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(3608183..3611365) Parvibaculum lavamentivorans DS-1 5454903 YP_001414631.1 CDS Plav_3370 NC_009719.1 3611377 3612483 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpd:RPD_3342 secretion protein HlyD; RND family efflux transporter MFP subunit complement(3611377..3612483) Parvibaculum lavamentivorans DS-1 5456015 YP_001414632.1 CDS Plav_3371 NC_009719.1 3612480 3613703 R PFAM: outer membrane efflux protein; KEGG: bbt:BBta_7183 putative outer membrane protein precursor CzcC; outer membrane efflux protein complement(3612480..3613703) Parvibaculum lavamentivorans DS-1 5456056 YP_001414633.1 CDS Plav_3372 NC_009719.1 3613825 3614142 R hypothetical protein complement(3613825..3614142) Parvibaculum lavamentivorans DS-1 5456128 YP_001414634.1 CDS Plav_3373 NC_009719.1 3614265 3614675 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: net:Neut_0085 transcriptional regulator, MerR family protein; MerR family transcriptional regulator complement(3614265..3614675) Parvibaculum lavamentivorans DS-1 5456124 YP_001414635.1 CDS Plav_3374 NC_009719.1 3614742 3614999 D PFAM: Heavy metal transport/detoxification protein; KEGG: acr:Acry_3236 E1-E2 ATPase-associated domain protein; heavy metal transport/detoxification protein 3614742..3614999 Parvibaculum lavamentivorans DS-1 5456275 YP_001414636.1 CDS Plav_3375 NC_009719.1 3615811 3616557 D KEGG: har:HEAR1967 hypothetical protein; hypothetical protein 3615811..3616557 Parvibaculum lavamentivorans DS-1 5456203 YP_001414637.1 CDS Plav_3376 NC_009719.1 3616676 3616888 D PFAM: Prophage CP4-57 regulatory; KEGG: har:HEAR1968 putative CP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage; phage transcriptional regulator AlpA 3616676..3616888 Parvibaculum lavamentivorans DS-1 5456381 YP_001414638.1 CDS Plav_3377 NC_009719.1 3616931 3617806 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: har:HEAR1969 putative chromosome partitioning related protein; cobyrinic acid ac-diamide synthase 3616931..3617806 Parvibaculum lavamentivorans DS-1 5456229 YP_001414639.1 CDS Plav_3378 NC_009719.1 3617790 3618050 D KEGG: har:HEAR1970 hypothetical protein; hypothetical protein 3617790..3618050 Parvibaculum lavamentivorans DS-1 5456512 YP_001414640.1 CDS Plav_3379 NC_009719.1 3618043 3619707 D KEGG: har:HEAR1971 hypothetical protein; hypothetical protein 3618043..3619707 Parvibaculum lavamentivorans DS-1 5456692 YP_001414641.1 CDS Plav_3380 NC_009719.1 3619723 3620283 D KEGG: har:HEAR1972 hypothetical protein; hypothetical protein 3619723..3620283 Parvibaculum lavamentivorans DS-1 5456648 YP_001414642.1 CDS Plav_3381 NC_009719.1 3620287 3621537 D KEGG: har:HEAR1973 hypothetical protein; hypothetical protein 3620287..3621537 Parvibaculum lavamentivorans DS-1 5453536 YP_001414643.1 CDS Plav_3382 NC_009719.1 3621869 3622657 D PFAM: Domain of unknown function DUF1845; KEGG: rme:Rmet_2295 hypothetical protein; hypothetical protein 3621869..3622657 Parvibaculum lavamentivorans DS-1 5453639 YP_001414644.1 CDS Plav_3383 NC_009719.1 3622654 3623181 D KEGG: rme:Rmet_2296 hypothetical protein; hypothetical protein 3622654..3623181 Parvibaculum lavamentivorans DS-1 5455149 YP_001414645.1 CDS Plav_3384 NC_009719.1 3623255 3623695 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 3623255..3623695 Parvibaculum lavamentivorans DS-1 5454314 YP_001414646.1 CDS Plav_3385 NC_009719.1 3623979 3626009 D decatenates replicating daughter chromosomes; DNA topoisomerase III 3623979..3626009 Parvibaculum lavamentivorans DS-1 5454402 YP_001414647.1 CDS Plav_3386 NC_009719.1 3626733 3627368 R KEGG: rme:Rmet_2299 cation efflux protein; cation efflux protein complement(3626733..3627368) Parvibaculum lavamentivorans DS-1 5453576 YP_001414648.1 CDS Plav_3388 NC_009719.1 3628095 3628382 D KEGG: rme:Rmet_2301 hypothetical protein; hypothetical protein 3628095..3628382 Parvibaculum lavamentivorans DS-1 5456855 YP_001414649.1 CDS Plav_3389 NC_009719.1 3628450 3628848 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rme:Rmet_2302 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(3628450..3628848) Parvibaculum lavamentivorans DS-1 5455376 YP_001414650.1 CDS Plav_3390 NC_009719.1 3628898 3631852 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rme:Rmet_2303 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 3628898..3631852 Parvibaculum lavamentivorans DS-1 5455580 YP_001414651.1 CDS Plav_3391 NC_009719.1 3631856 3632356 D TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: rme:Rmet_2304 lipoprotein signal peptidase; lipoprotein signal peptidase 3631856..3632356 Parvibaculum lavamentivorans DS-1 5455811 YP_001414652.1 CDS Plav_3392 NC_009719.1 3632693 3633004 D KEGG: rme:Rmet_2305 hypothetical protein; hypothetical protein 3632693..3633004 Parvibaculum lavamentivorans DS-1 5454640 YP_001414653.1 CDS Plav_3393 NC_009719.1 3633342 3633554 D KEGG: rme:Rmet_2306 hypothetical protein; hypothetical protein 3633342..3633554 Parvibaculum lavamentivorans DS-1 5456255 YP_001414654.1 CDS Plav_3394 NC_009719.1 3633576 3633968 D KEGG: har:HEAR1982 hypothetical protein; hypothetical protein 3633576..3633968 Parvibaculum lavamentivorans DS-1 5456272 YP_001414655.1 CDS Plav_3395 NC_009719.1 3634182 3634919 D KEGG: har:HEAR1983 hypothetical protein; hypothetical protein 3634182..3634919 Parvibaculum lavamentivorans DS-1 5456007 YP_001414656.1 CDS Plav_3396 NC_009719.1 3635016 3635294 D KEGG: har:HEAR1985 hypothetical protein; hypothetical protein 3635016..3635294 Parvibaculum lavamentivorans DS-1 5456079 YP_001414657.1 CDS Plav_3397 NC_009719.1 3635582 3636394 D KEGG: ajs:Ajs_1437 hypothetical protein; hypothetical protein 3635582..3636394 Parvibaculum lavamentivorans DS-1 5456981 YP_001414658.1 CDS Plav_3398 NC_009719.1 3636536 3636889 D KEGG: xfa:XF1764 hypothetical protein; hypothetical protein 3636536..3636889 Parvibaculum lavamentivorans DS-1 5456159 YP_001414659.1 CDS Plav_3399 NC_009719.1 3637256 3638185 D KEGG: ajs:Ajs_1294 hypothetical protein; hypothetical protein 3637256..3638185 Parvibaculum lavamentivorans DS-1 5456765 YP_001414660.1 CDS Plav_3400 NC_009719.1 3638244 3638933 D KEGG: bxe:Bxe_A1208 hypothetical protein; hypothetical protein 3638244..3638933 Parvibaculum lavamentivorans DS-1 5456558 YP_001414661.1 CDS Plav_3401 NC_009719.1 3639028 3639354 D KEGG: xcv:XCV2393 hypothetical protein; hypothetical protein 3639028..3639354 Parvibaculum lavamentivorans DS-1 5455904 YP_001414662.1 CDS Plav_3402 NC_009719.1 3639457 3639798 D KEGG: net:Neut_0108 hypothetical protein; hypothetical protein 3639457..3639798 Parvibaculum lavamentivorans DS-1 5456812 YP_001414663.1 CDS Plav_3403 NC_009719.1 3639903 3640553 D KEGG: har:HEAR1992 hypothetical protein; hypothetical protein 3639903..3640553 Parvibaculum lavamentivorans DS-1 5456806 YP_001414664.1 CDS Plav_3404 NC_009719.1 3640618 3641727 D KEGG: ajs:Ajs_1420 hypothetical protein; hypothetical protein 3640618..3641727 Parvibaculum lavamentivorans DS-1 5456752 YP_001414665.1 CDS Plav_3405 NC_009719.1 3641831 3644110 D PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: har:HEAR1996 putative helicase from plasmid origin; helicase domain-containing protein 3641831..3644110 Parvibaculum lavamentivorans DS-1 5454869 YP_001414666.1 CDS Plav_3406 NC_009719.1 3644251 3645030 D KEGG: fjo:Fjoh_3686 hypothetical protein; hypothetical protein 3644251..3645030 Parvibaculum lavamentivorans DS-1 5454684 YP_001414667.1 CDS Plav_3407 NC_009719.1 3645099 3646913 R PFAM: UvrD/REP helicase; KEGG: har:HEAR1998 putative DNA helicase II; UvrD/REP helicase complement(3645099..3646913) Parvibaculum lavamentivorans DS-1 5453901 YP_001414668.1 CDS Plav_3408 NC_009719.1 3646900 3648684 R KEGG: har:HEAR1999 hypothetical protein; hypothetical protein complement(3646900..3648684) Parvibaculum lavamentivorans DS-1 5455240 YP_001414669.1 CDS Plav_3409 NC_009719.1 3648888 3649508 D KEGG: har:HEAR2000 hypothetical protein; hypothetical protein 3648888..3649508 Parvibaculum lavamentivorans DS-1 5456131 YP_001414670.1 CDS Plav_3410 NC_009719.1 3649505 3650155 D KEGG: bxe:Bxe_A1199 hypothetical protein; hypothetical protein 3649505..3650155 Parvibaculum lavamentivorans DS-1 5456997 YP_001414671.1 CDS Plav_3411 NC_009719.1 3650170 3650895 D KEGG: har:HEAR2002 conserved hypothetical protein; putative signal peptide; putative signal peptide 3650170..3650895 Parvibaculum lavamentivorans DS-1 5456604 YP_001414672.1 CDS Plav_3412 NC_009719.1 3650877 3651467 D PFAM: Lytic transglycosylase catalytic; KEGG: bxe:Bxe_A1197 hypothetical protein; lytic transglycosylase catalytic subunit 3650877..3651467 Parvibaculum lavamentivorans DS-1 5456516 YP_001414673.1 CDS Plav_3413 NC_009719.1 3651464 3652012 D KEGG: bxe:Bxe_A1196 hypothetical protein; hypothetical protein 3651464..3652012 Parvibaculum lavamentivorans DS-1 5454270 YP_001414674.1 CDS Plav_3414 NC_009719.1 3652017 3654218 D KEGG: har:HEAR2005 hypothetical protein; hypothetical protein 3652017..3654218 Parvibaculum lavamentivorans DS-1 5454863 YP_001414675.1 CDS Plav_3415 NC_009719.1 3654215 3654964 D KEGG: har:HEAR2006 hypothetical protein; hypothetical protein 3654215..3654964 Parvibaculum lavamentivorans DS-1 5454184 YP_001414676.1 CDS Plav_3416 NC_009719.1 3655063 3655446 D KEGG: rme:Rmet_2345 plasmid conserved hypothetical protein, RAQPRD; hypothetical protein 3655063..3655446 Parvibaculum lavamentivorans DS-1 5456750 YP_001414677.1 CDS Plav_3417 NC_009719.1 3655443 3655676 D KEGG: ajs:Ajs_1263 hypothetical protein; hypothetical protein 3655443..3655676 Parvibaculum lavamentivorans DS-1 5456803 YP_001414678.1 CDS Plav_3418 NC_009719.1 3655693 3656052 D KEGG: ajs:Ajs_1404 hypothetical protein; hypothetical protein 3655693..3656052 Parvibaculum lavamentivorans DS-1 5456798 YP_001414679.1 CDS Plav_3419 NC_009719.1 3656064 3656474 D KEGG: bxe:Bxe_A1189 hypothetical protein; hypothetical protein 3656064..3656474 Parvibaculum lavamentivorans DS-1 5456282 YP_001414680.1 CDS Plav_3420 NC_009719.1 3656471 3657160 D KEGG: xcb:XC_2035 hypothetical protein; hypothetical protein 3656471..3657160 Parvibaculum lavamentivorans DS-1 5456783 YP_001414681.1 CDS Plav_3421 NC_009719.1 3657157 3658083 D KEGG: xcv:XCV2370 putative secreted protein; hypothetical protein 3657157..3658083 Parvibaculum lavamentivorans DS-1 5456809 YP_001414682.1 CDS Plav_3422 NC_009719.1 3658073 3659482 D KEGG: rme:Rmet_2351 putative secreted protein; hypothetical protein 3658073..3659482 Parvibaculum lavamentivorans DS-1 5456060 YP_001414683.1 CDS Plav_3423 NC_009719.1 3659463 3659912 D KEGG: har:HEAR2019 conserved hypothetical protein; putative signal peptide; putative signal peptide 3659463..3659912 Parvibaculum lavamentivorans DS-1 5455788 YP_001414684.1 CDS Plav_3424 NC_009719.1 3659912 3662782 D KEGG: xcv:XCV2367 hypothetical protein; hypothetical protein 3659912..3662782 Parvibaculum lavamentivorans DS-1 5455758 YP_001414685.1 CDS Plav_3425 NC_009719.1 3662795 3663559 D KEGG: xcv:XCV2366 hypothetical protein; hypothetical protein 3662795..3663559 Parvibaculum lavamentivorans DS-1 5456601 YP_001414686.1 CDS Plav_3426 NC_009719.1 3663744 3664238 D PFAM: DNA repair protein RadC; KEGG: har:HEAR2022 putative DNA repair protein, RadC family DNA repair protein; CP4-6 prophage; DNA repair protein RadC 3663744..3664238 Parvibaculum lavamentivorans DS-1 5455830 YP_001414687.1 CDS Plav_3427 NC_009719.1 3664398 3664844 D PFAM: protein of unknown function DUF1525; KEGG: har:HEAR2023 hypothetical protein; hypothetical protein 3664398..3664844 Parvibaculum lavamentivorans DS-1 5456041 YP_001414688.1 CDS Plav_3428 NC_009719.1 3664841 3665788 D PFAM: protein of unknown function DUF1527; KEGG: bxe:Bxe_A1180 hypothetical protein; hypothetical protein 3664841..3665788 Parvibaculum lavamentivorans DS-1 5456427 YP_001414689.1 CDS Plav_3429 NC_009719.1 3665798 3667192 D KEGG: rme:Rmet_2358 hypothetical protein; hypothetical protein 3665798..3667192 Parvibaculum lavamentivorans DS-1 5456786 YP_001414690.1 CDS Plav_3430 NC_009719.1 3667189 3667548 D KEGG: ajs:Ajs_1250 hypothetical protein; hypothetical protein 3667189..3667548 Parvibaculum lavamentivorans DS-1 5456743 YP_001414691.1 CDS Plav_3431 NC_009719.1 3667564 3669087 D KEGG: ajs:Ajs_1391 hypothetical protein; hypothetical protein 3667564..3669087 Parvibaculum lavamentivorans DS-1 5456712 YP_001414692.1 CDS Plav_3432 NC_009719.1 3669094 3669453 R KEGG: xcv:XCV2359 hypothetical protein; hypothetical protein complement(3669094..3669453) Parvibaculum lavamentivorans DS-1 5456324 YP_001414693.1 CDS Plav_3433 NC_009719.1 3669481 3669939 R KEGG: bxe:Bxe_A1175 hypothetical protein; hypothetical protein complement(3669481..3669939) Parvibaculum lavamentivorans DS-1 5456568 YP_001414694.1 CDS Plav_3434 NC_009719.1 3669939 3670325 R TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: ajs:Ajs_1246 transcriptional regulator, AbrB family; AbrB family transcriptional regulator complement(3669939..3670325) Parvibaculum lavamentivorans DS-1 5456688 YP_001414695.1 CDS Plav_3435 NC_009719.1 3670558 3672423 D PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xfa:XF1753 hypothetical protein; relaxase 3670558..3672423 Parvibaculum lavamentivorans DS-1 5456050 YP_001414696.1 CDS Plav_3436 NC_009719.1 3672693 3673070 R hypothetical protein complement(3672693..3673070) Parvibaculum lavamentivorans DS-1 5456586 YP_001414697.1 CDS Plav_3437 NC_009719.1 3673265 3674044 R PFAM: IstB domain protein ATP-binding protein; IstB ATP binding domain protein; SMART: AAA ATPase; KEGG: bvi:Bcep1808_6226 IstB domain protein ATP-binding protein; IstB ATP-binding domain-containing protein complement(3673265..3674044) Parvibaculum lavamentivorans DS-1 5456444 YP_001414698.1 CDS Plav_3440 NC_009719.1 3675607 3677208 R PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_5143 integrase, catalytic region; integrase catalytic subunit complement(3675607..3677208) Parvibaculum lavamentivorans DS-1 5456509 YP_001414699.1 CDS Plav_3441 NC_009719.1 3677496 3679439 R KEGG: xcb:XC_3476 hypothetical protein; hypothetical protein complement(3677496..3679439) Parvibaculum lavamentivorans DS-1 5456977 YP_001414700.1 CDS Plav_3442 NC_009719.1 3679436 3680482 R KEGG: xac:XAC0808 hypothetical protein; hypothetical protein complement(3679436..3680482) Parvibaculum lavamentivorans DS-1 5456405 YP_001414701.1 CDS Plav_3444 NC_009719.1 3681566 3683053 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: har:HEAR2593 putative outer membrane transport protein involved in copper (silver) tolerance (CusC); RND efflux system outer membrane lipoprotein 3681566..3683053 Parvibaculum lavamentivorans DS-1 5456075 YP_001414702.1 CDS Plav_3445 NC_009719.1 3683068 3684147 D PFAM: secretion protein HlyD family protein; KEGG: azo:azo2911 membrane fusion protein; secretion protein HlyD family protein 3683068..3684147 Parvibaculum lavamentivorans DS-1 5456150 YP_001414703.1 CDS Plav_3446 NC_009719.1 3684151 3686919 D PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: ajs:Ajs_2361 ABC transporter related; ABC transporter-like protein 3684151..3686919 Parvibaculum lavamentivorans DS-1 5456224 YP_001414704.1 CDS Plav_3447 NC_009719.1 3686921 3688051 D PFAM: ABC-2 type transporter; KEGG: ajs:Ajs_2362 ABC-2 type transporter; ABC transporter 3686921..3688051 Parvibaculum lavamentivorans DS-1 5456210 YP_001414705.1 CDS Plav_3448 NC_009719.1 3688099 3688560 D KEGG: bvi:Bcep1808_6163 hypothetical protein; hypothetical protein 3688099..3688560 Parvibaculum lavamentivorans DS-1 5454661 YP_001414706.1 CDS Plav_3449 NC_009719.1 3688550 3689296 D TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rme:Rmet_1333 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase 3688550..3689296 Parvibaculum lavamentivorans DS-1 5456178 YP_001414707.1 CDS Plav_3450 NC_009719.1 3689382 3691886 D KEGG: bvi:Bcep1808_6174 hypothetical protein; hypothetical protein 3689382..3691886 Parvibaculum lavamentivorans DS-1 5456208 YP_001414708.1 CDS Plav_3451 NC_009719.1 3691883 3693304 D PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: har:HEAR1516 putative phosphate acetyltransferase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase 3691883..3693304 Parvibaculum lavamentivorans DS-1 5456125 YP_001414709.1 CDS Plav_3452 NC_009719.1 3693348 3694100 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rme:Rmet_1335 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3693348..3694100 Parvibaculum lavamentivorans DS-1 5456103 YP_001414710.1 CDS Plav_3453 NC_009719.1 3694180 3695418 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: har:HEAR1515 acetate kinase (acetokinase); acetate kinase 3694180..3695418 Parvibaculum lavamentivorans DS-1 5455397 YP_001414711.1 CDS Plav_3454 NC_009719.1 3695415 3696620 D PFAM: sodium/glutamate symporter; KEGG: psa:PST_0687 sodium-glutamate symporter; sodium/glutamate symporter 3695415..3696620 Parvibaculum lavamentivorans DS-1 5456026 YP_001414712.1 CDS Plav_3455 NC_009719.1 3696801 3698552 D PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: eba:ebA5073 putative poly-beta-hydroxyalkanoate synthase; poly-beta-hydroxybutyrate polymerase domain-containing protein 3696801..3698552 Parvibaculum lavamentivorans DS-1 5455975 YP_001414713.1 CDS Plav_3456 NC_009719.1 3698639 3699133 D PFAM: UspA domain protein; KEGG: rme:Rmet_1334 UspA; UspA domain-containing protein 3698639..3699133 Parvibaculum lavamentivorans DS-1 5455924 YP_001414714.1 CDS Plav_3457 NC_009719.1 3699130 3700203 D KEGG: xcb:XC_0709 hypothetical protein; hypothetical protein 3699130..3700203 Parvibaculum lavamentivorans DS-1 5456020 YP_001414715.1 CDS Plav_3458 NC_009719.1 3700407 3701303 D Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 3700407..3701303 Parvibaculum lavamentivorans DS-1 5455898 YP_001414716.1 CDS Plav_3459 NC_009719.1 3701342 3703720 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mes:Meso_3878 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 3701342..3703720 Parvibaculum lavamentivorans DS-1 5455394 YP_001414717.1 CDS Plav_3460 NC_009719.1 3703756 3705114 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bbr:BB2340 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 3703756..3705114 Parvibaculum lavamentivorans DS-1 5455914 YP_001414718.1 CDS Plav_3461 NC_009719.1 3705111 3706628 D catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase 3705111..3706628 Parvibaculum lavamentivorans DS-1 5455912 YP_001414719.1 CDS Plav_3462 NC_009719.1 3706818 3707708 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_2400 transcriptional regulator, LysR family; LysR family transcriptional regulator 3706818..3707708 Parvibaculum lavamentivorans DS-1 5455946 YP_001414720.1 CDS Plav_3463 NC_009719.1 3707732 3708025 R PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_2401 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(3707732..3708025) Parvibaculum lavamentivorans DS-1 5455939 YP_001414721.1 CDS Plav_3464 NC_009719.1 3708145 3708798 D PFAM: LysR substrate-binding; KEGG: har:HEAR2052 hypothetical protein; LysR family transcriptional regulator 3708145..3708798 Parvibaculum lavamentivorans DS-1 5455919 YP_001414722.1 CDS Plav_3466 NC_009719.1 3709966 3711900 R PFAM: integrase family protein; KEGG: har:HEAR2054 integrase; integrase family protein complement(3709966..3711900) Parvibaculum lavamentivorans DS-1 5455209 YP_001414723.1 CDS Plav_3467 NC_009719.1 3712125 3714029 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rpa:RPA3260 putative cation-transporting P-type ATPase; heavy metal translocating P-type ATPase 3712125..3714029 Parvibaculum lavamentivorans DS-1 5456932 YP_001414724.1 CDS Plav_3468 NC_009719.1 3714093 3715238 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mes:Meso_4111 potassium transporter (trk family); FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3714093..3715238 Parvibaculum lavamentivorans DS-1 5455351 YP_001414725.1 CDS Plav_3469 NC_009719.1 3715345 3715953 R KEGG: rsh:Rsph17029_3024 hypothetical protein; hypothetical protein complement(3715345..3715953) Parvibaculum lavamentivorans DS-1 5455814 YP_001414726.1 CDS Plav_3470 NC_009719.1 3716151 3716498 R KEGG: rpe:RPE_2440 hypothetical protein; hypothetical protein complement(3716151..3716498) Parvibaculum lavamentivorans DS-1 5455646 YP_001414727.1 CDS Plav_3471 NC_009719.1 3716847 3717263 R KEGG: sme:SMa0285 hypothetical protein; hypothetical protein complement(3716847..3717263) Parvibaculum lavamentivorans DS-1 5455728 YP_001414728.1 CDS Plav_3472 NC_009719.1 3717260 3717913 R PFAM: protein of unknown function DUF433; KEGG: pna:Pnap_4858 protein of unknown function DUF433; hypothetical protein complement(3717260..3717913) Parvibaculum lavamentivorans DS-1 5453605 YP_001414729.1 CDS Plav_3473 NC_009719.1 3718755 3720002 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mes:Meso_3871 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 3718755..3720002 Parvibaculum lavamentivorans DS-1 5455258 YP_001414730.1 CDS Plav_3474 NC_009719.1 3720017 3720415 R PFAM: DoxX family protein; KEGG: sme:SMb20597 hypothetical protein; DoxX family protein complement(3720017..3720415) Parvibaculum lavamentivorans DS-1 5456947 YP_001414731.1 CDS Plav_3475 NC_009719.1 3720781 3722274 D TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; KEGG: rpb:RPB_2458 replicative DNA helicase; replicative DNA helicase 3720781..3722274 Parvibaculum lavamentivorans DS-1 5455620 YP_001414732.1 CDS Plav_3476 NC_009719.1 3722391 3722801 R PFAM: CBS domain containing protein; KEGG: vpa:VP0814 hypothetical protein; signal-transduction protein complement(3722391..3722801) Parvibaculum lavamentivorans DS-1 5455531 YP_001414733.1 CDS Plav_3477 NC_009719.1 3722798 3723148 R KEGG: ppr:PBPRA2810 putative nitrogen regulatory protein P-II family protein; putative nitrogen regulatory protein P-II family protein complement(3722798..3723148) Parvibaculum lavamentivorans DS-1 5453756 YP_001414734.1 CDS Plav_3478 NC_009719.1 3723138 3723905 R PFAM: protein of unknown function DUF1538; KEGG: ppr:PBPRA2811 hypothetical PTS system mannose-specific, factor IIC; hypothetical protein complement(3723138..3723905) Parvibaculum lavamentivorans DS-1 5454885 YP_001414735.1 CDS Plav_3479 NC_009719.1 3723909 3724646 R PFAM: protein of unknown function DUF1538; KEGG: cps:CPS_1953 hypothetical protein; hypothetical protein complement(3723909..3724646) Parvibaculum lavamentivorans DS-1 5455425 YP_001414736.1 CDS Plav_3480 NC_009719.1 3724742 3725611 D PFAM: UspA domain protein; KEGG: pau:PA14_56590 putative universal stress protein; UspA domain-containing protein 3724742..3725611 Parvibaculum lavamentivorans DS-1 5454179 YP_001414737.1 CDS Plav_3481 NC_009719.1 3725685 3727799 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rru:Rru_A3213 PAS/PAC sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3725685..3727799) Parvibaculum lavamentivorans DS-1 5455563 YP_001414738.1 CDS Plav_3482 NC_009719.1 3728013 3729239 D TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; KEGG: rpe:RPE_3334 alanine racemase; alanine racemase 3728013..3729239 Parvibaculum lavamentivorans DS-1 5454952 YP_001414739.1 CDS Plav_3483 NC_009719.1 3729236 3730009 D PFAM: protein of unknown function DUF140; KEGG: rru:Rru_A0408 protein of unknown function DUF140; hypothetical protein 3729236..3730009 Parvibaculum lavamentivorans DS-1 5455478 YP_001414740.1 CDS Plav_3484 NC_009719.1 3730014 3730787 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2093 ABC-type transport system involved in resistance to organic solvents; ABC transporter-like protein 3730014..3730787 Parvibaculum lavamentivorans DS-1 5455485 YP_001414741.1 CDS Plav_3485 NC_009719.1 3730928 3732352 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3730928..3732352 Parvibaculum lavamentivorans DS-1 5455405 YP_001414742.1 CDS Plav_3486 NC_009719.1 3732383 3733081 D PFAM: Colicin V production protein; KEGG: mes:Meso_0984 colicin V production protein; colicin V production protein 3732383..3733081 Parvibaculum lavamentivorans DS-1 5455404 YP_001414743.1 CDS Plav_3487 NC_009719.1 3733108 3734619 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 3733108..3734619 Parvibaculum lavamentivorans DS-1 5454804 YP_001414744.1 CDS Plav_3488 NC_009719.1 3734646 3735365 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rru:Rru_A0403 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3734646..3735365 Parvibaculum lavamentivorans DS-1 5454781 YP_001414745.1 CDS Plav_3489 NC_009719.1 3735370 3735696 R KEGG: mlo:mlr3986 hypothetical protein; hypothetical protein complement(3735370..3735696) Parvibaculum lavamentivorans DS-1 5455253 YP_001414746.1 CDS Plav_3490 NC_009719.1 3735762 3736136 D PFAM: helix-turn-helix HxlR type; KEGG: rpa:RPA0326 DUF24, predicted transcriptional regulator, related to MarR family; HxlR family transcriptional regulator 3735762..3736136 Parvibaculum lavamentivorans DS-1 5454134 YP_001414747.1 CDS Plav_3491 NC_009719.1 3736255 3739155 D TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: atc:AGR_L_1617 hypothetical protein; PAS/PAC sensor hybrid histidine kinase 3736255..3739155 Parvibaculum lavamentivorans DS-1 5454643 YP_001414748.1 CDS Plav_3492 NC_009719.1 3739166 3740587 R TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: sit:TM1040_0991 small GTP-binding protein domain; small GTP-binding protein complement(3739166..3740587) Parvibaculum lavamentivorans DS-1 5455168 YP_001414749.1 CDS Plav_3493 NC_009719.1 3740609 3741994 R PFAM: Pyrrolo-quinoline quinone; KEGG: mag:amb1343 WD40-like repeat; Pyrrolo-quinoline quinone complement(3740609..3741994) Parvibaculum lavamentivorans DS-1 5453906 YP_001414750.1 CDS Plav_3494 NC_009719.1 3742001 3742723 R KEGG: rpc:RPC_2277 hypothetical protein; hypothetical protein complement(3742001..3742723) Parvibaculum lavamentivorans DS-1 5454908 YP_001414751.1 CDS Plav_3495 NC_009719.1 3742871 3743695 R TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; KEGG: rpe:RPE_3348 3-methyl-2-oxobutanoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(3742871..3743695) Parvibaculum lavamentivorans DS-1 5453691 YP_001414752.1 CDS Plav_3496 NC_009719.1 3743884 3744642 R KEGG: sit:TM1040_2884 hypothetical protein; hypothetical protein complement(3743884..3744642) Parvibaculum lavamentivorans DS-1 5454732 YP_001414753.1 CDS Plav_3497 NC_009719.1 3744639 3745175 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 TPR repeat; hypothetical protein complement(3744639..3745175) Parvibaculum lavamentivorans DS-1 5454681 YP_001414754.1 CDS Plav_3498 NC_009719.1 3745224 3745640 R KEGG: mva:Mvan_3975 hypothetical protein; hypothetical protein complement(3745224..3745640) Parvibaculum lavamentivorans DS-1 5454205 YP_001414755.1 CDS Plav_3499 NC_009719.1 3745637 3746905 R PFAM: cytochrome P450; KEGG: mva:Mvan_3974 cytochrome P450; cytochrome P450 complement(3745637..3746905) Parvibaculum lavamentivorans DS-1 5455192 YP_001414756.1 CDS Plav_3500 NC_009719.1 3747065 3747565 D SMART: regulatory protein MarR; MarR family transcriptional regulator 3747065..3747565 Parvibaculum lavamentivorans DS-1 5454303 YP_001414757.1 CDS Plav_3501 NC_009719.1 3747676 3748689 D TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: bra:BRADO3992 aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH); aspartate-semialdehyde dehydrogenase 3747676..3748689 Parvibaculum lavamentivorans DS-1 5454502 YP_001414758.1 CDS Plav_3502 NC_009719.1 3748692 3749459 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMc04054 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(3748692..3749459) Parvibaculum lavamentivorans DS-1 5453666 YP_001414759.1 CDS Plav_3503 NC_009719.1 3749483 3749953 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rfr:Rfer_4108 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase complement(3749483..3749953) Parvibaculum lavamentivorans DS-1 5454625 YP_001414760.1 CDS Plav_3504 NC_009719.1 3750014 3750373 R PFAM: regulatory protein ArsR; KEGG: mes:Meso_2191 transcriptional regulator, ArsR family; regulatory protein ArsR complement(3750014..3750373) Parvibaculum lavamentivorans DS-1 5453891 YP_001414761.1 CDS Plav_3505 NC_009719.1 3750431 3751828 R PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_4405 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3750431..3751828) Parvibaculum lavamentivorans DS-1 5455041 YP_001414762.1 CDS Plav_3506 NC_009719.1 3751915 3752583 R PFAM: Intracellular septation protein A; KEGG: bov:BOV_1862 intracellular septation protein A; intracellular septation protein A complement(3751915..3752583) Parvibaculum lavamentivorans DS-1 5454259 YP_001414763.1 CDS Plav_3507 NC_009719.1 3752710 3753777 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5638 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3752710..3753777 Parvibaculum lavamentivorans DS-1 5453711 YP_001414764.1 CDS Plav_3508 NC_009719.1 3754035 3755951 R hypothetical protein complement(3754035..3755951) Parvibaculum lavamentivorans DS-1 5453664 YP_001414765.1 CDS Plav_3509 NC_009719.1 3755948 3758722 R KEGG: cps:CPS_2955 hypothetical protein; exonuclease V subunit alpha complement(3755948..3758722) Parvibaculum lavamentivorans DS-1 5455199 YP_001414766.1 CDS Plav_3510 NC_009719.1 3758806 3759822 R PFAM: Domain of unknown function DUF1814; KEGG: gbe:GbCGDNIH1_1177 hypothetical protein; hypothetical protein complement(3758806..3759822) Parvibaculum lavamentivorans DS-1 5453574 YP_001414767.1 CDS Plav_3511 NC_009719.1 3759815 3760408 R KEGG: mlo:mll5901 hypothetical protein; hypothetical protein complement(3759815..3760408) Parvibaculum lavamentivorans DS-1 5453369 YP_001414768.1 CDS Plav_3512 NC_009719.1 3760649 3761611 D PFAM: domain of unknown function DUF1738; KEGG: bbt:BBta_7394 putative ArdC antirestriction protein; hypothetical protein 3760649..3761611 Parvibaculum lavamentivorans DS-1 5455145 YP_001414769.1 CDS Plav_3513 NC_009719.1 3761773 3763893 D PFAM: ParB domain protein nuclease; KEGG: pde:Pden_1541 ParB-like partition proteins; nuclease 3761773..3763893 Parvibaculum lavamentivorans DS-1 5455191 YP_001414770.1 CDS Plav_3514 NC_009719.1 3764024 3764440 D KEGG: pde:Pden_1536 hypothetical protein; hypothetical protein 3764024..3764440 Parvibaculum lavamentivorans DS-1 5453562 YP_001414771.1 CDS Plav_3515 NC_009719.1 3764437 3764703 D KEGG: mes:Meso_3821 hypothetical protein; hypothetical protein 3764437..3764703 Parvibaculum lavamentivorans DS-1 5454317 YP_001414772.1 CDS Plav_3516 NC_009719.1 3764700 3764996 D KEGG: pde:Pden_1539 hypothetical protein; hypothetical protein 3764700..3764996 Parvibaculum lavamentivorans DS-1 5454329 YP_001414773.1 CDS Plav_3517 NC_009719.1 3765155 3769474 D KEGG: pde:Pden_1533 probable methylase/helicase; putative methylase/helicase 3765155..3769474 Parvibaculum lavamentivorans DS-1 5453936 YP_001414774.1 CDS Plav_3518 NC_009719.1 3769474 3770508 D KEGG: bbt:BBta_7718 hypothetical protein; hypothetical protein 3769474..3770508 Parvibaculum lavamentivorans DS-1 5454504 YP_001414775.1 CDS Plav_3519 NC_009719.1 3770860 3771786 D KEGG: pde:Pden_1531 hypothetical protein; hypothetical protein 3770860..3771786 Parvibaculum lavamentivorans DS-1 5454466 YP_001414776.1 CDS Plav_3520 NC_009719.1 3771873 3772127 D KEGG: rle:pRL120075 putative plasmid stability protein StbC; putative plasmid stability protein StbC 3771873..3772127 Parvibaculum lavamentivorans DS-1 5454445 YP_001414777.1 CDS Plav_3521 NC_009719.1 3772124 3772546 D PFAM: PilT protein domain protein; KEGG: rle:pRL120076 putative plasmid stability protein StbB; PilT domain-containing protein 3772124..3772546 Parvibaculum lavamentivorans DS-1 5454461 YP_001414778.1 CDS Plav_3522 NC_009719.1 3772828 3772995 D KEGG: mlo:msr9708 hypothetical protein; hypothetical protein 3772828..3772995 Parvibaculum lavamentivorans DS-1 5453381 YP_001414779.1 CDS Plav_3523 NC_009719.1 3773130 3773570 D KEGG: nwi:Nwi_2132 hypothetical protein; hypothetical protein 3773130..3773570 Parvibaculum lavamentivorans DS-1 5454622 YP_001414780.1 CDS Plav_3524 NC_009719.1 3774107 3774469 D PFAM: protein of unknown function DUF736; KEGG: mlo:mlr9738 hypothetical protein; hypothetical protein 3774107..3774469 Parvibaculum lavamentivorans DS-1 5456756 YP_001414781.1 CDS Plav_3525 NC_009719.1 3774477 3774632 R hypothetical protein complement(3774477..3774632) Parvibaculum lavamentivorans DS-1 5456780 YP_001414782.1 CDS Plav_3526 NC_009719.1 3774777 3775043 D KEGG: mes:Meso_0528 transcriptional regulator, XRE family; XRE family transcriptional regulator 3774777..3775043 Parvibaculum lavamentivorans DS-1 5456498 YP_001414783.1 CDS Plav_3527 NC_009719.1 3775140 3775400 D KEGG: mes:Meso_0527 hypothetical protein; hypothetical protein 3775140..3775400 Parvibaculum lavamentivorans DS-1 5456442 YP_001414784.1 CDS Plav_3529 NC_009719.1 3775762 3776292 D KEGG: pde:Pden_3174 hypothetical protein; hypothetical protein 3775762..3776292 Parvibaculum lavamentivorans DS-1 5455467 YP_001414785.1 CDS Plav_3530 NC_009719.1 3776429 3776710 D KEGG: pde:Pden_1513 hypothetical protein; hypothetical protein 3776429..3776710 Parvibaculum lavamentivorans DS-1 5456383 YP_001414786.1 CDS Plav_3531 NC_009719.1 3776729 3777889 D KEGG: pde:Pden_1512 replication protein A; replication protein A 3776729..3777889 Parvibaculum lavamentivorans DS-1 5456256 YP_001414787.1 CDS Plav_3532 NC_009719.1 3777886 3778539 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mes:Meso_2336 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 3777886..3778539 Parvibaculum lavamentivorans DS-1 5456142 YP_001414788.1 CDS Plav_3533 NC_009719.1 3778536 3778787 D KEGG: bja:bsl0049 hypothetical protein; hypothetical protein 3778536..3778787 Parvibaculum lavamentivorans DS-1 5455762 YP_001414789.1 CDS Plav_3534 NC_009719.1 3778784 3779305 D KEGG: bbt:BBta_7734 hypothetical protein; hypothetical protein 3778784..3779305 Parvibaculum lavamentivorans DS-1 5455715 YP_001414790.1 CDS Plav_3535 NC_009719.1 3779302 3779847 D KEGG: mes:Meso_2333 conjugal transfer protein precursor; conjugal transfer protein 3779302..3779847 Parvibaculum lavamentivorans DS-1 5455781 YP_001414791.1 CDS Plav_3536 NC_009719.1 3779844 3780263 D PFAM: protein of unknown function DUF736; KEGG: bbt:BBta_7736 hypothetical protein; hypothetical protein 3779844..3780263 Parvibaculum lavamentivorans DS-1 5455047 YP_001414792.1 CDS Plav_3537 NC_009719.1 3780267 3781046 D PFAM: Lytic transglycosylase catalytic; KEGG: pde:Pden_3185 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 3780267..3781046 Parvibaculum lavamentivorans DS-1 5455617 YP_001414793.1 CDS Plav_3538 NC_009719.1 3781290 3783029 D KEGG: pde:Pden_1507 hypothetical protein; hypothetical protein 3781290..3783029 Parvibaculum lavamentivorans DS-1 5455481 YP_001414794.1 CDS Plav_3539 NC_009719.1 3783056 3785047 D type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG 3783056..3785047 Parvibaculum lavamentivorans DS-1 5455277 YP_001414795.1 CDS Plav_3540 NC_009719.1 3785052 3785501 D KEGG: bja:bll0042 hypothetical protein; hypothetical protein 3785052..3785501 Parvibaculum lavamentivorans DS-1 5454381 YP_001414796.1 CDS Plav_3541 NC_009719.1 3785670 3786653 D TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: mes:Meso_2324 type II secretion system protein E; P-type conjugative transfer ATPase TrbB 3785670..3786653 Parvibaculum lavamentivorans DS-1 5456889 YP_001414797.1 CDS Plav_3542 NC_009719.1 3786650 3786982 D PFAM: Conjugal transfer protein TrbC; KEGG: pde:Pden_1483 conjugal transfer protein TrbC; conjugal transfer protein TrbC 3786650..3786982 Parvibaculum lavamentivorans DS-1 5455234 YP_001414798.1 CDS Plav_3543 NC_009719.1 3786982 3787263 D KEGG: mlo:mll9611 conjugal transfer protein trbB; conjugal transfer protein TrbB 3786982..3787263 Parvibaculum lavamentivorans DS-1 5454073 YP_001414799.1 CDS Plav_3544 NC_009719.1 3787278 3789728 D type IV secretion system VirB4 family; conjugal transfer ATPase TrbE 3787278..3789728 Parvibaculum lavamentivorans DS-1 5453542 YP_001414800.1 CDS Plav_3545 NC_009719.1 3789734 3790513 D TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pde:Pden_1480 conjugal transfer protein TrbJ; conjugal transfer protein TrbJ 3789734..3790513 Parvibaculum lavamentivorans DS-1 5455654 YP_001414801.1 CDS Plav_3546 NC_009719.1 3790524 3790808 D KEGG: mes:Meso_2319 hypothetical protein; hypothetical protein 3790524..3790808 Parvibaculum lavamentivorans DS-1 5456885 YP_001414802.1 CDS Plav_3547 NC_009719.1 3790812 3792173 D type IV secretion VirB6 family; conjugal transfer protein TrbL 3790812..3792173 Parvibaculum lavamentivorans DS-1 5453584 YP_001414803.1 CDS Plav_3548 NC_009719.1 3792170 3792859 D PFAM: Conjugal transfer protein; KEGG: mes:Meso_0502 conjugal transfer protein; conjugal transfer protein TrbF 3792170..3792859 Parvibaculum lavamentivorans DS-1 5453870 YP_001414804.1 CDS Plav_3549 NC_009719.1 3792856 3793836 D TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mes:Meso_0501 conjugal transfer protein TrbG/VirB9/CagX; P-type conjugative transfer protein TrbG 3792856..3793836 Parvibaculum lavamentivorans DS-1 5454360 YP_001414805.1 CDS Plav_3550 NC_009719.1 3793833 3795017 D PFAM: conjugation TrbI family protein; KEGG: mes:Meso_0500 conjugation TrbI-like protein; conjugation TrbI family protein 3793833..3795017 Parvibaculum lavamentivorans DS-1 5455167 YP_001414806.1 CDS Plav_3551 NC_009719.1 3795019 3795258 D KEGG: gbe:GbCGDNIH1_1065 hypothetical protein; hypothetical protein 3795019..3795258 Parvibaculum lavamentivorans DS-1 5454072 YP_001414807.1 CDS Plav_3552 NC_009719.1 3795253 3796146 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3205 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3795253..3796146) Parvibaculum lavamentivorans DS-1 5454923 YP_001414808.1 CDS Plav_3553 NC_009719.1 3796243 3796623 D TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: vei:Veis_2614 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 3796243..3796623 Parvibaculum lavamentivorans DS-1 5453961 YP_001414809.1 CDS Plav_3554 NC_009719.1 3796620 3797117 D KEGG: dno:DNO_0182 conserved hypothetical protein VrlJ; hypothetical protein 3796620..3797117 Parvibaculum lavamentivorans DS-1 5454055 YP_001414810.1 CDS Plav_3555 NC_009719.1 3797139 3800879 D KEGG: ace:Acel_0812 hypothetical protein; hypothetical protein 3797139..3800879 Parvibaculum lavamentivorans DS-1 5454183 YP_001414811.1 CDS Plav_3556 NC_009719.1 3800884 3802746 D PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0482 divergent AAA ATP; putative transcriptional regulator 3800884..3802746 Parvibaculum lavamentivorans DS-1 5454016 YP_001414812.1 CDS Plav_3557 NC_009719.1 3802736 3804625 D KEGG: chu:CHU_1497 conserved hypothetical protein; possible histidine kinase; hypothetical protein 3802736..3804625 Parvibaculum lavamentivorans DS-1 5454629 YP_001414813.1 CDS Plav_3558 NC_009719.1 3804643 3807405 D KEGG: ace:Acel_0814 hypothetical protein; hypothetical protein 3804643..3807405 Parvibaculum lavamentivorans DS-1 5455600 YP_001414814.1 CDS Plav_3559 NC_009719.1 3807409 3810234 D PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: ace:Acel_0816 helicase domain protein; helicase domain-containing protein 3807409..3810234 Parvibaculum lavamentivorans DS-1 5456874 YP_001414815.1 CDS Plav_3560 NC_009719.1 3810231 3812267 D PFAM: PglZ domain protein; KEGG: dno:DNO_0176 conserved hypothetical protein VrlP; alkaline phosphatase domain-containing protein 3810231..3812267 Parvibaculum lavamentivorans DS-1 5456792 YP_001414816.1 CDS Plav_3561 NC_009719.1 3812275 3812997 D KEGG: dno:DNO_0175 conserved hypothetical protein VrlQ; hypothetical protein 3812275..3812997 Parvibaculum lavamentivorans DS-1 5456529 YP_001414817.1 CDS Plav_3562 NC_009719.1 3813161 3813445 D PFAM: Prophage CP4-57 regulatory; KEGG: rpa:RPA2205 hypothetical protein; phage transcriptional regulator AlpA 3813161..3813445 Parvibaculum lavamentivorans DS-1 5456987 YP_001414818.1 CDS Plav_3563 NC_009719.1 3813423 3814679 R PFAM: integrase family protein; KEGG: rpa:RPA2204 integrase; integrase family protein complement(3813423..3814679) Parvibaculum lavamentivorans DS-1 5456842 YP_001414819.1 CDS Plav_3564 NC_009719.1 3815129 3815572 R PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pde:Pden_4050 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase complement(3815129..3815572) Parvibaculum lavamentivorans DS-1 5455187 YP_001414820.1 CDS Plav_3565 NC_009719.1 3815626 3816123 R PFAM: regulatory protein MarR; KEGG: bha:BH2061 transcriptional regulator (MarR family); MarR family transcriptional regulator complement(3815626..3816123) Parvibaculum lavamentivorans DS-1 5456657 YP_001414821.1 CDS Plav_3566 NC_009719.1 3816253 3816933 D KEGG: mes:Meso_4022 protein of unknown function DUF540; hypothetical protein 3816253..3816933 Parvibaculum lavamentivorans DS-1 5457026 YP_001414822.1 CDS Plav_3567 NC_009719.1 3816941 3817312 D KEGG: acr:Acry_2024 hypothetical protein; hypothetical protein 3816941..3817312 Parvibaculum lavamentivorans DS-1 5456996 YP_001414823.1 CDS Plav_3568 NC_009719.1 3817309 3817953 R KEGG: sal:Sala_2745 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III complement(3817309..3817953) Parvibaculum lavamentivorans DS-1 5456730 YP_001414824.1 CDS Plav_3569 NC_009719.1 3818034 3818540 D KEGG: bja:bll0688 hypothetical protein; hypothetical protein 3818034..3818540 Parvibaculum lavamentivorans DS-1 5455795 YP_001414825.1 CDS Plav_3570 NC_009719.1 3818534 3819166 R catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(3818534..3819166) Parvibaculum lavamentivorans DS-1 5454031 YP_001414826.1 CDS Plav_3571 NC_009719.1 3819195 3820010 R PFAM: dihydrodipicolinate reductase; KEGG: rle:RL0180 putative dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(3819195..3820010) Parvibaculum lavamentivorans DS-1 5456373 YP_001414827.1 CDS Plav_3572 NC_009719.1 3820053 3820397 R PFAM: protein of unknown function DUF486; KEGG: sme:SMc04230 hypothetical transmembrane signal peptide protein; hypothetical protein complement(3820053..3820397) Parvibaculum lavamentivorans DS-1 5456584 YP_001414828.1 CDS Plav_3573 NC_009719.1 3820464 3821621 R TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sme:SMc02858 probable chaperone protein; chaperone protein DnaJ complement(3820464..3821621) Parvibaculum lavamentivorans DS-1 5457030 YP_001414829.1 CDS Plav_3574 NC_009719.1 3821719 3823638 R TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: sme:SMc02857 heat shock protein 70 (HSP70) chaperone; chaperone protein DnaK complement(3821719..3823638) Parvibaculum lavamentivorans DS-1 5456859 YP_001414830.1 CDS Plav_3575 NC_009719.1 3823953 3824504 R PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(3823953..3824504) Parvibaculum lavamentivorans DS-1 5457044 YP_001414831.1 CDS Plav_3576 NC_009719.1 3824567 3825232 D PFAM: 2OG-Fe(II) oxygenase; KEGG: rle:RL0039 putative alkylated DNA repair protein; 2OG-Fe(II) oxygenase 3824567..3825232 Parvibaculum lavamentivorans DS-1 5456276 YP_001414832.1 CDS Plav_3577 NC_009719.1 3825229 3825933 R PFAM: NnrUfamily protein; KEGG: mca:MCA0498 hypothetical protein; NnrU family protein complement(3825229..3825933) Parvibaculum lavamentivorans DS-1 5456583 YP_001414833.1 CDS Plav_3578 NC_009719.1 3826012 3826653 R PFAM: GrpE protein; KEGG: bov:BOV_0165 heat shock protein GrpE; GrpE protein HSP-70 cofactor complement(3826012..3826653) Parvibaculum lavamentivorans DS-1 5456578 YP_001414834.1 CDS hrcA NC_009719.1 3826744 3827808 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(3826744..3827808) Parvibaculum lavamentivorans DS-1 5457033 YP_001414835.1 CDS rph NC_009719.1 3827982 3828698 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 3827982..3828698 Parvibaculum lavamentivorans DS-1 5456852 YP_001414836.1 CDS Plav_3581 NC_009719.1 3828695 3829300 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3828695..3829300 Parvibaculum lavamentivorans DS-1 5456640 YP_001414837.1 CDS Plav_3582 NC_009719.1 3829281 3830438 D KEGG: mlo:mlr4627 oxygen-independent coproporphyrinogen III oxidase (hemN); TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 3829281..3830438 Parvibaculum lavamentivorans DS-1 5456849 YP_001414838.1 CDS Plav_3583 NC_009719.1 3830435 3831088 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: pde:Pden_0174 maleylacetoacetate isomerase; maleylacetoacetate isomerase complement(3830435..3831088) Parvibaculum lavamentivorans DS-1 5456660 YP_001414839.1 CDS Plav_3584 NC_009719.1 3831089 3832330 R PFAM: Extracellular ligand-binding receptor; KEGG: mmr:Mmar10_3012 ABC-type branched-chain amino acid transport systems, periplasmic component; extracellular ligand-binding receptor complement(3831089..3832330) Parvibaculum lavamentivorans DS-1 5457017 YP_001414840.1 CDS Plav_3585 NC_009719.1 3832488 3833363 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rpe:RPE_0357 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase 3832488..3833363 Parvibaculum lavamentivorans DS-1 5456490 YP_001414841.1 CDS Plav_3586 NC_009719.1 3833360 3833761 D PFAM: protein of unknown function UPF0102; KEGG: bra:BRADO0179 hypothetical protein; hypothetical protein 3833360..3833761 Parvibaculum lavamentivorans DS-1 5456697 YP_001414842.1 CDS Plav_3587 NC_009719.1 3833824 3834399 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: mag:amb4504 predicted periplasmic or secreted lipoprotein; transport-associated protein 3833824..3834399 Parvibaculum lavamentivorans DS-1 5455236 YP_001414843.1 CDS Plav_3588 NC_009719.1 3834459 3835322 D KEGG: swi:Swit_1164 hypothetical protein; hypothetical protein 3834459..3835322 Parvibaculum lavamentivorans DS-1 5453827 YP_001414844.1 CDS Plav_3589 NC_009719.1 3835419 3836357 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3835419..3836357 Parvibaculum lavamentivorans DS-1 5455146 YP_001414845.1 CDS Plav_3590 NC_009719.1 3836376 3836639 R hypothetical protein complement(3836376..3836639) Parvibaculum lavamentivorans DS-1 5455344 YP_001414846.1 CDS Plav_3591 NC_009719.1 3836725 3838011 D PFAM: peptidase M19 renal dipeptidase; KEGG: sus:Acid_3699 membrane dipeptidase; membrane dipeptidase 3836725..3838011 Parvibaculum lavamentivorans DS-1 5454997 YP_001414847.1 CDS Plav_3592 NC_009719.1 3838099 3838866 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mlo:mlr2805 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 3838099..3838866 Parvibaculum lavamentivorans DS-1 5455247 YP_001414848.1 CDS Plav_3593 NC_009719.1 3838913 3839884 D KEGG: sfu:Sfum_1249 hypothetical protein; hypothetical protein 3838913..3839884 Parvibaculum lavamentivorans DS-1 5453722 YP_001414849.1 CDS Plav_3594 NC_009719.1 3839986 3841536 D TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mes:Meso_3583 Mg chelatase, subunit ChlI; Mg chelatase subunit ChlI 3839986..3841536 Parvibaculum lavamentivorans DS-1 5453697 YP_001414850.1 CDS Plav_3595 NC_009719.1 3841650 3843884 D KEGG: rpc:RPC_0315 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 3841650..3843884 Parvibaculum lavamentivorans DS-1 5455148 YP_001414851.1 CDS Plav_3596 NC_009719.1 3843926 3845362 D PFAM: major facilitator superfamily MFS_1; KEGG: tbd:Tbd_0253 putative transport transmembrane protein; major facilitator superfamily transporter 3843926..3845362 Parvibaculum lavamentivorans DS-1 5453611 YP_001414852.1 CDS Plav_3597 NC_009719.1 3845473 3846498 D KEGG: rpa:RPA0316 hypothetical protein; hypothetical protein 3845473..3846498 Parvibaculum lavamentivorans DS-1 5454060 YP_001414853.1 CDS Plav_3598 NC_009719.1 3846511 3848775 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(3846511..3848775) Parvibaculum lavamentivorans DS-1 5453617 YP_001414854.1 CDS Plav_3599 NC_009719.1 3848991 3851717 D TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS II domain protein; MutS IV domain protein; KEGG: bms:BR0147 DNA mismatch repair protein MutS; DNA mismatch repair protein MutS 3848991..3851717 Parvibaculum lavamentivorans DS-1 5453736 YP_001414855.1 CDS Plav_3600 NC_009719.1 3851912 3852793 R PFAM: Methyltransferase type 11; KEGG: sfu:Sfum_3345 hypothetical protein; type 11 methyltransferase complement(3851912..3852793) Parvibaculum lavamentivorans DS-1 5454293 YP_001414856.1 CDS Plav_3601 NC_009719.1 3852771 3853082 R hypothetical protein complement(3852771..3853082) Parvibaculum lavamentivorans DS-1 5454064 YP_001414857.1 CDS Plav_3602 NC_009719.1 3853312 3856107 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3853312..3856107 Parvibaculum lavamentivorans DS-1 5454956 YP_001414858.1 CDS Plav_3603 NC_009719.1 3856208 3856738 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; plasmid stabilization system; KEGG: gsu:GSU2439 RelE protein; prevent-host-death family protein complement(3856208..3856738) Parvibaculum lavamentivorans DS-1 5454776 YP_001414859.1 CDS Plav_3604 NC_009719.1 3856964 3858502 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: mag:amb4409 uncharacterized membrane protein, putative virulence factor; integral membrane protein MviN 3856964..3858502 Parvibaculum lavamentivorans DS-1 5453731 YP_001414860.1 CDS Plav_3605 NC_009719.1 3858529 3860361 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pmy:Pmen_4041 integral membrane sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 3858529..3860361 Parvibaculum lavamentivorans DS-1 5453753 YP_001414861.1 CDS Plav_3606 NC_009719.1 3860365 3860991 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pde:Pden_4349 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(3860365..3860991) Parvibaculum lavamentivorans DS-1 5455066 YP_001414862.1 CDS Plav_3607 NC_009719.1 3861143 3865144 D TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: bam:Bamb_4364 outer membrane autotransporter barrel domain; outer membrane autotransporter 3861143..3865144 Parvibaculum lavamentivorans DS-1 5454167 YP_001414863.1 CDS Plav_3608 NC_009719.1 3865483 3866490 D TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; KEGG: nha:Nham_0012 tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase 3865483..3866490 Parvibaculum lavamentivorans DS-1 5453389 YP_001414864.1 CDS Plav_3609 NC_009719.1 3866581 3867648 D KEGG: mag:amb4407 hypothetical protein; hypothetical protein 3866581..3867648 Parvibaculum lavamentivorans DS-1 5453671 YP_001414865.1 CDS Plav_3610 NC_009719.1 3867703 3868209 D PFAM: UspA domain protein; KEGG: rle:RL0401 putative universal stress protein; UspA domain-containing protein 3867703..3868209 Parvibaculum lavamentivorans DS-1 5454515 YP_001414866.1 CDS Plav_3611 NC_009719.1 3868245 3868850 D PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: sit:TM1040_3091 nitrogen-fixing NifU-like; scaffold protein Nfu/NifU 3868245..3868850 Parvibaculum lavamentivorans DS-1 5454118 YP_001414867.1 CDS Plav_3612 NC_009719.1 3868953 3869546 D PFAM: nitroreductase; KEGG: ecs:ECs1254 putative enzyme; hypothetical protein 3868953..3869546 Parvibaculum lavamentivorans DS-1 5453474 YP_001414868.1 CDS Plav_3613 NC_009719.1 3869564 3870256 D PFAM: peptidase M22 glycoprotease; KEGG: glycoprotease family protein; peptidase M22 glycoprotease 3869564..3870256 Parvibaculum lavamentivorans DS-1 5456234 YP_001414869.1 CDS Plav_3614 NC_009719.1 3870280 3870738 D PFAM: GCN5-related N-acetyltransferase; KEGG: bov:BOV_2064 ribosomal-protein-alanine acetyltransferase; N-acetyltransferase GCN5 3870280..3870738 Parvibaculum lavamentivorans DS-1 5456702 YP_001414870.1 CDS Plav_3615 NC_009719.1 3870848 3871354 D PFAM: ferric-uptake regulator; KEGG: mmr:Mmar10_3031 ferric uptake regulator, Fur family; ferric uptake regulator family protein 3870848..3871354 Parvibaculum lavamentivorans DS-1 5454283 YP_001414871.1 CDS Plav_3616 NC_009719.1 3871395 3872261 D PFAM: phospholipid/glycerol acyltransferase; KEGG: bmb:BruAb1_2126 acyltransferase, hypothetical; phospholipid/glycerol acyltransferase 3871395..3872261 Parvibaculum lavamentivorans DS-1 5454954 YP_001414872.1 CDS Plav_3617 NC_009719.1 3872381 3873784 D KEGG: ret:RHE_CH00376 putative 2-methylthioadenine synthetase (MiaB-like) protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; RNA modification protein 3872381..3873784 Parvibaculum lavamentivorans DS-1 5454919 YP_001414873.1 CDS Plav_3618 NC_009719.1 3873838 3874866 D PFAM: PhoH family protein; KEGG: sme:SMc01114 hypothetical PHOH-like protein; PhoH family protein 3873838..3874866 Parvibaculum lavamentivorans DS-1 5455155 YP_001414874.1 CDS Plav_3619 NC_009719.1 3874863 3875420 D PFAM: protein of unknown function UPF0054; KEGG: mag:amb4465 predicted metal-dependent hydrolase; hypothetical protein 3874863..3875420 Parvibaculum lavamentivorans DS-1 5453370 YP_001414875.1 CDS Plav_3620 NC_009719.1 3875430 3876389 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: rru:Rru_A3773 CBS domain protein; hypothetical protein 3875430..3876389 Parvibaculum lavamentivorans DS-1 5453614 YP_001414876.1 CDS Plav_3621 NC_009719.1 3876393 3878066 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpd:RPD_0238 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 3876393..3878066 Parvibaculum lavamentivorans DS-1 5454012 YP_001414877.1 CDS Plav_3622 NC_009719.1 3878193 3878636 D PFAM: helix-turn-helix domain protein; KEGG: sme:SMc01110 DNA-binding protein; XRE family transcriptional regulator 3878193..3878636 Parvibaculum lavamentivorans DS-1 5453766 YP_001414878.1 CDS Plav_3623 NC_009719.1 3878862 3880031 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3878862..3880031 Parvibaculum lavamentivorans DS-1 5456858 YP_001414879.1 CDS Plav_3624 NC_009719.1 3880061 3880786 D TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; KEGG: bbt:BBta_0053 tRNA (guanine-N(7)-)-methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 3880061..3880786 Parvibaculum lavamentivorans DS-1 5456501 YP_001414880.1 CDS Plav_3625 NC_009719.1 3880944 3881567 D PFAM: protein of unknown function DUF150; KEGG: jan:Jann_0041 protein of unknown function DUF150; hypothetical protein 3880944..3881567 Parvibaculum lavamentivorans DS-1 5456960 YP_001414881.1 CDS Plav_3626 NC_009719.1 3881572 3883182 D TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH type 1 domain protein; NusA domain protein; SMART: KH domain protein; KEGG: sme:SMc02912 probable N utilization substance protein A; NusA antitermination factor 3881572..3883182 Parvibaculum lavamentivorans DS-1 5455837 YP_001414882.1 CDS Plav_3627 NC_009719.1 3883166 3883849 D PFAM: protein of unknown function DUF448; KEGG: pde:Pden_2593 protein of unknown function DUF448; hypothetical protein 3883166..3883849 Parvibaculum lavamentivorans DS-1 5456635 YP_001414883.1 CDS Plav_3628 NC_009719.1 3883880 3886543 D TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein; KEGG: rpb:RPB_0600 translation initiation factor IF-2; translation initiation factor IF-2 3883880..3886543 Parvibaculum lavamentivorans DS-1 5455820 YP_001414884.1 CDS Plav_3629 NC_009719.1 3886606 3887028 D PFAM: ribosome-binding factor A; KEGG: mag:amb4070 ribosome-binding factor A; ribosome-binding factor A 3886606..3887028 Parvibaculum lavamentivorans DS-1 5453496 YP_001414885.1 CDS Plav_3630 NC_009719.1 3887033 3887956 D TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: bbt:BBta_0059 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 3887033..3887956 Parvibaculum lavamentivorans DS-1 5454704 YP_001414886.1 CDS Plav_3631 NC_009719.1 3887967 3888236 D PFAM: ribosomal protein S15; KEGG: sme:SMc00323 30S ribosomal protein S15; 30S ribosomal protein S15 3887967..3888236 Parvibaculum lavamentivorans DS-1 5454737 YP_001414887.1 CDS Plav_3632 NC_009719.1 3888557 3890743 D PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; SMART: KH domain protein; KEGG: mes:Meso_3935 3' exoribonuclease; polynucleotide phosphorylase/polyadenylase 3888557..3890743 Parvibaculum lavamentivorans DS-1 5454738 YP_001414888.1 CDS Plav_3633 NC_009719.1 3890815 3891438 D KEGG: swi:Swit_3433 hypothetical protein; hypothetical protein 3890815..3891438 Parvibaculum lavamentivorans DS-1 5454082 YP_001414889.1 CDS Plav_3634 NC_009719.1 3891445 3892311 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr0771 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR complement(3891445..3892311) Parvibaculum lavamentivorans DS-1 5453787 YP_001414890.1 CDS Plav_3635 NC_009719.1 3892381 3893607 R PFAM: Beta-ketoacyl synthase; KEGG: rpd:RPD_0221 beta-ketoacyl synthase; beta-ketoacyl synthase complement(3892381..3893607) Parvibaculum lavamentivorans DS-1 5457042 YP_001414891.1 CDS Plav_3636 NC_009719.1 3893694 3894212 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(3893694..3894212) Parvibaculum lavamentivorans DS-1 5453846 YP_001414892.1 CDS Plav_3637 NC_009719.1 3894492 3894923 D PFAM: ferric-uptake regulator; KEGG: mag:amb4306 Fe2+/Zn2+ uptake regulation protein; ferric uptake regulator family protein 3894492..3894923 Parvibaculum lavamentivorans DS-1 5454583 YP_001414893.1 CDS Plav_3638 NC_009719.1 3895184 3895606 D PFAM: Rubrerythrin; KEGG: pub:SAR11_0399 rubrerythrin; rubrerythrin 3895184..3895606 Parvibaculum lavamentivorans DS-1 5453723 YP_001414894.1 CDS Plav_3639 NC_009719.1 3895700 3897070 D KEGG: pub:SAR11_0400 anaerobic glycerol-3-phosphate dehydrogenase subunit C; anaerobic glycerol-3-phosphate dehydrogenase subunit C 3895700..3897070 Parvibaculum lavamentivorans DS-1 5454300 YP_001414895.1 CDS Plav_3640 NC_009719.1 3897088 3897681 D KEGG: pub:SAR11_0401 hypothetical protein; hypothetical protein 3897088..3897681 Parvibaculum lavamentivorans DS-1 5454920 YP_001414896.1 CDS Plav_3641 NC_009719.1 3897688 3899148 R PFAM: sulfatase; KEGG: bmb:BruAb2_1121 sulfatase; sulfatase complement(3897688..3899148) Parvibaculum lavamentivorans DS-1 5454446 YP_001414897.1 CDS Plav_3642 NC_009719.1 3899150 3899749 R PFAM: protein of unknown function DUF1058; KEGG: mlo:mll5573 hypothetical protein; hypothetical protein complement(3899150..3899749) Parvibaculum lavamentivorans DS-1 5454160 YP_001414898.1 CDS Plav_3643 NC_009719.1 3899882 3900874 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: hne:HNE_3433 glyoxylate reductase; glyoxylate reductase 3899882..3900874 Parvibaculum lavamentivorans DS-1 5456969 YP_001414899.1 CDS Plav_3644 NC_009719.1 3901031 3901354 R KEGG: cbu:CBUA0027 DNA-binding protein; DNA-binding protein complement(3901031..3901354) Parvibaculum lavamentivorans DS-1 5455099 YP_001414900.1 CDS Plav_3645 NC_009719.1 3901344 3901721 R PFAM: protein of unknown function DUF1044; KEGG: shn:Shewana3_1245 protein of unknown function DUF1044; hypothetical protein complement(3901344..3901721) Parvibaculum lavamentivorans DS-1 5455456 YP_001414901.1 CDS Plav_3646 NC_009719.1 3901769 3902572 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rpc:RPC_0364 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD-binding protein complement(3901769..3902572) Parvibaculum lavamentivorans DS-1 5455471 YP_001414902.1 CDS Plav_3647 NC_009719.1 3902619 3903416 R KEGG: rpe:RPE_0758 hypothetical protein; hypothetical protein complement(3902619..3903416) Parvibaculum lavamentivorans DS-1 5455677 YP_001414903.1 CDS Plav_3648 NC_009719.1 3903431 3904132 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_3013 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3903431..3904132) Parvibaculum lavamentivorans DS-1 5455575 YP_001414904.1 CDS Plav_3649 NC_009719.1 3904160 3904756 R PFAM: DSBA oxidoreductase; KEGG: pau:PA14_01440 putative 2-hydroxychromene-2-carboxylate isomerase; DSBA oxidoreductase complement(3904160..3904756) Parvibaculum lavamentivorans DS-1 5456319 YP_001414905.1 CDS Plav_3650 NC_009719.1 3904771 3905373 R PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_5151 hypothetical protein; DSBA oxidoreductase complement(3904771..3905373) Parvibaculum lavamentivorans DS-1 5456462 YP_001414906.1 CDS Plav_3651 NC_009719.1 3905394 3906122 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pau:PA14_01430 putative short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3905394..3906122) Parvibaculum lavamentivorans DS-1 5456520 YP_001414907.1 CDS Plav_3652 NC_009719.1 3906297 3906791 D PFAM: helix-turn-helix HxlR type; KEGG: pau:PA14_01410 putative transcriptional regulator; HxlR family transcriptional regulator 3906297..3906791 Parvibaculum lavamentivorans DS-1 5456847 YP_001414908.1 CDS Plav_3653 NC_009719.1 3906793 3907752 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: atc:AGR_C_543 cysteine synthase A; cysteine synthase A complement(3906793..3907752) Parvibaculum lavamentivorans DS-1 5456980 YP_001414909.1 CDS Plav_3654 NC_009719.1 3907810 3908259 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rru:Rru_A3795 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(3907810..3908259) Parvibaculum lavamentivorans DS-1 5455945 YP_001414910.1 CDS Plav_3655 NC_009719.1 3908264 3908731 R TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: bja:bll0758 deoxyuridine 5'-triphosphate nucleotidohydrolase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(3908264..3908731) Parvibaculum lavamentivorans DS-1 5455943 YP_001414911.1 CDS Plav_3656 NC_009719.1 3908728 3909972 R TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: sil:SPO0408 phosphopantothenoylcysteine synthase/decarboxylase; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(3908728..3909972) Parvibaculum lavamentivorans DS-1 5456979 YP_001414912.1 CDS Plav_3657 NC_009719.1 3910113 3911717 R TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: bbt:BBta_0082 ubiquinone biosynthesis protein UbiB; 2-polyprenylphenol 6-hydroxylase complement(3910113..3911717) Parvibaculum lavamentivorans DS-1 5455455 YP_001414913.1 CDS Plav_3658 NC_009719.1 3911719 3912507 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpe:RPE_0470 ubiquinone/menaquinone biosynthesis methyltransferases; ubiquinone/menaquinone biosynthesis methyltransferase complement(3911719..3912507) Parvibaculum lavamentivorans DS-1 5456764 YP_001414914.1 CDS Plav_3659 NC_009719.1 3912563 3913444 D TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase; KEGG: hne:HNE_3274 formamidopyrimidine-DNA glycosylase; formamidopyrimidine-DNA glycosylase 3912563..3913444 Parvibaculum lavamentivorans DS-1 5456284 YP_001414915.1 CDS Plav_3660 NC_009719.1 3913475 3913873 D KEGG: mag:amb0633 hypothetical protein; hypothetical protein 3913475..3913873 Parvibaculum lavamentivorans DS-1 5456138 YP_001414916.1 CDS Plav_3661 NC_009719.1 3913947 3914723 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rru:Rru_A3801 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3913947..3914723 Parvibaculum lavamentivorans DS-1 5456763 Plav_R0001 tRNA Plav_R0001 NC_009719.1 112793 112869 R tRNA-Arg complement(112793..112869) Parvibaculum lavamentivorans DS-1 5454699 Plav_R0002 tRNA Plav_R0002 NC_009719.1 168564 168639 D tRNA-Ala 168564..168639 Parvibaculum lavamentivorans DS-1 5456539 Plav_R0003 tRNA Plav_R0003 NC_009719.1 221491 221577 R tRNA-Leu complement(221491..221577) Parvibaculum lavamentivorans DS-1 5454556 Plav_R0004 tRNA Plav_R0004 NC_009719.1 244777 244866 D tRNA-Ser 244777..244866 Parvibaculum lavamentivorans DS-1 5455551 Plav_R0006 tRNA Plav_R0006 NC_009719.1 337190 337266 D tRNA-Arg 337190..337266 Parvibaculum lavamentivorans DS-1 5453437 Plav_R0007 tRNA Plav_R0007 NC_009719.1 448263 448336 D tRNA-Gly 448263..448336 Parvibaculum lavamentivorans DS-1 5453992 Plav_R0008 tRNA Plav_R0008 NC_009719.1 558464 558538 R tRNA-Thr complement(558464..558538) Parvibaculum lavamentivorans DS-1 5456915 Plav_R0009 tRNA Plav_R0009 NC_009719.1 568078 568153 D tRNA-Phe 568078..568153 Parvibaculum lavamentivorans DS-1 5456394 Plav_R0010 tRNA Plav_R0010 NC_009719.1 609872 609948 D tRNA-His 609872..609948 Parvibaculum lavamentivorans DS-1 5455353 Plav_R0011 tRNA Plav_R0011 NC_009719.1 879651 879727 R tRNA-Pro complement(879651..879727) Parvibaculum lavamentivorans DS-1 5456017 Plav_R0012 tRNA Plav_R0012 NC_009719.1 879908 879982 D tRNA-Gln 879908..879982 Parvibaculum lavamentivorans DS-1 5455315 Plav_R0013 tRNA Plav_R0013 NC_009719.1 1193339 1193414 R tRNA-Val complement(1193339..1193414) Parvibaculum lavamentivorans DS-1 5456856 Plav_R0014 tRNA Plav_R0014 NC_009719.1 1295070 1295143 R tRNA-Gln complement(1295070..1295143) Parvibaculum lavamentivorans DS-1 5453732 Plav_R0015 tRNA Plav_R0015 NC_009719.1 1450297 1450371 D tRNA-Gly 1450297..1450371 Parvibaculum lavamentivorans DS-1 5456683 Plav_R0016 tRNA Plav_R0016 NC_009719.1 1485877 1485952 D tRNA-Thr 1485877..1485952 Parvibaculum lavamentivorans DS-1 5456561 Plav_R0017 tRNA Plav_R0017 NC_009719.1 1503665 1503740 R tRNA-Ala complement(1503665..1503740) Parvibaculum lavamentivorans DS-1 5453441 Plav_R0018 tRNA Plav_R0018 NC_009719.1 1617112 1617201 D tRNA-Ser 1617112..1617201 Parvibaculum lavamentivorans DS-1 5454911 Plav_R0019 tRNA Plav_R0019 NC_009719.1 1770727 1770812 D tRNA-Leu 1770727..1770812 Parvibaculum lavamentivorans DS-1 5455812 Plav_R0020 tRNA Plav_R0020 NC_009719.1 1825642 1825718 R tRNA-Arg complement(1825642..1825718) Parvibaculum lavamentivorans DS-1 5453401 Plav_R0022 tRNA Plav_R0022 NC_009719.1 1902944 1903020 D tRNA-Ile 1902944..1903020 Parvibaculum lavamentivorans DS-1 5455358 Plav_R0023 tRNA Plav_R0023 NC_009719.1 1903071 1903146 D tRNA-Ala 1903071..1903146 Parvibaculum lavamentivorans DS-1 5456990 Plav_R0025 tRNA Plav_R0025 NC_009719.1 1906619 1906695 D tRNA-Met 1906619..1906695 Parvibaculum lavamentivorans DS-1 5455459 Plav_R0026 tRNA Plav_R0026 NC_009719.1 2183140 2183214 D tRNA-Val 2183140..2183214 Parvibaculum lavamentivorans DS-1 5455241 Plav_R0027 tRNA Plav_R0027 NC_009719.1 2346100 2346174 D tRNA-Glu 2346100..2346174 Parvibaculum lavamentivorans DS-1 5454421 Plav_R0028 tRNA Plav_R0028 NC_009719.1 2370646 2370722 D tRNA-Met 2370646..2370722 Parvibaculum lavamentivorans DS-1 5455111 Plav_R0029 tRNA Plav_R0029 NC_009719.1 2494195 2494271 D tRNA-Met 2494195..2494271 Parvibaculum lavamentivorans DS-1 5453836 Plav_R0031 tRNA Plav_R0031 NC_009719.1 2686129 2686204 D tRNA-Lys 2686129..2686204 Parvibaculum lavamentivorans DS-1 5454256 Plav_R0032 tRNA Plav_R0032 NC_009719.1 2805410 2805496 D tRNA-Leu 2805410..2805496 Parvibaculum lavamentivorans DS-1 5456023 Plav_R0033 tRNA Plav_R0033 NC_009719.1 2925484 2925559 R tRNA-Thr complement(2925484..2925559) Parvibaculum lavamentivorans DS-1 5453486 Plav_R0034 tRNA Plav_R0034 NC_009719.1 2927938 2928022 D tRNA-Tyr 2927938..2928022 Parvibaculum lavamentivorans DS-1 5454069 Plav_R0035 tRNA Plav_R0035 NC_009719.1 2928078 2928151 D tRNA-Gly 2928078..2928151 Parvibaculum lavamentivorans DS-1 5453348 Plav_R0036 tRNA Plav_R0036 NC_009719.1 2929516 2929591 D tRNA-Trp 2929516..2929591 Parvibaculum lavamentivorans DS-1 5453823 Plav_R0037 tRNA Plav_R0037 NC_009719.1 2977755 2977841 D tRNA-Leu 2977755..2977841 Parvibaculum lavamentivorans DS-1 5454351 Plav_R0038 tRNA Plav_R0038 NC_009719.1 3054491 3054583 D tRNA-Ser 3054491..3054583 Parvibaculum lavamentivorans DS-1 5454677 Plav_R0039 tRNA Plav_R0039 NC_009719.1 3126096 3126172 D tRNA-Pro 3126096..3126172 Parvibaculum lavamentivorans DS-1 5455302 Plav_R0040 tRNA Plav_R0040 NC_009719.1 3148021 3148095 D tRNA-Glu 3148021..3148095 Parvibaculum lavamentivorans DS-1 5456699 Plav_R0041 tRNA Plav_R0041 NC_009719.1 3171924 3172000 D tRNA-Pro 3171924..3172000 Parvibaculum lavamentivorans DS-1 5456514 Plav_R0042 tRNA Plav_R0042 NC_009719.1 3172821 3172897 D tRNA-Arg 3172821..3172897 Parvibaculum lavamentivorans DS-1 5456325 Plav_R0043 tRNA Plav_R0043 NC_009719.1 3191545 3191619 R tRNA-Asn complement(3191545..3191619) Parvibaculum lavamentivorans DS-1 5456449 Plav_R0044 tRNA Plav_R0044 NC_009719.1 3203759 3203832 R tRNA-Cys complement(3203759..3203832) Parvibaculum lavamentivorans DS-1 5456351 Plav_R0045 tRNA Plav_R0045 NC_009719.1 3262777 3262851 D tRNA-Lys 3262777..3262851 Parvibaculum lavamentivorans DS-1 5454787 Plav_R0046 tRNA Plav_R0046 NC_009719.1 3315731 3315820 D tRNA-Ser 3315731..3315820 Parvibaculum lavamentivorans DS-1 5455270 Plav_R0047 tRNA Plav_R0047 NC_009719.1 3444118 3444194 R tRNA-Asp complement(3444118..3444194) Parvibaculum lavamentivorans DS-1 5454195 Plav_R0048 tRNA Plav_R0048 NC_009719.1 3444309 3444384 R tRNA-Val complement(3444309..3444384) Parvibaculum lavamentivorans DS-1 5454610 Plav_R0049 tRNA Plav_R0049 NC_009719.1 3455338 3455422 R tRNA-Leu complement(3455338..3455422) Parvibaculum lavamentivorans DS-1 5454541 Plav_R0021 rRNA Plav_R0021 NC_009719.1 1901257 1902735 D 16S ribosomal RNA 1901257..1902735 Parvibaculum lavamentivorans DS-1 5455370 Plav_R0024 rRNA Plav_R0024 NC_009719.1 1903534 1906273 D 23S ribosomal RNA 1903534..1906273 Parvibaculum lavamentivorans DS-1 5456190 Plav_R0050 rRNA Plav_R0050 NC_009719.1 1906370 1906487 D 5S ribosomal RNA 1906370..1906487 Parvibaculum lavamentivorans DS-1 5542219