-- dump date   	20140619_224249
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003800016.1	COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: apv:Apar_1363 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: B9CLR4 SpoOJ regulator protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003800017.1	COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: apv:Apar_1362 ParB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: B9CLR3 Stage 0 sporulation protein J; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins
YP_003800018.1	COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR004383:IPR007197; KEGG: apv:Apar_1361 radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; SPTR: C8W8J4 Radical SAM enzyme, Cfr family; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family
YP_003800019.1	COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterProIPR016185:IPR005905:IPR011761:IPR013817:IPR 013816:IPR000291:IPR011127:IPR011095; KEGG: apv:Apar_1360 D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: C8W8J3 D-alanine/D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_003800020.1	COGs: COG1199 Rad3-related DNA helicase; InterProIPR012337:IPR006054:IPR014013:IPR006055:IPR 006555:IPR002345:IPR013520; KEGG: apv:Apar_1359 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; helicase c2; SPTR: C8W8J2 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family; DnaQ family exonuclease/DinG family helicase
YP_003800021.1	COGs: COG2378 transcriptional regulator protein; KEGG: apv:Apar_1358 hypothetical protein; SPTR: B9CLQ8  uncharacterized protein
YP_003800022.1	KEGG: apv:Apar_1357 transcriptional regulator protein-like protein; SPTR: C2D9I9  uncharacterized protein
YP_003800023.1	InterPro IPR020392; KEGG: apv:Apar_1356 hypothetical protein; SPTR: C2D9I8  uncharacterized protein
YP_003800024.1	COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); InterPro IPR000787; KEGG: apv:Apar_1352 peptidase M29 aminopeptidase II; PFAM: peptidase M29 aminopeptidase II; SPTR: B9CLQ2 Aminopeptidase 2; PFAM: Thermophilic metalloprotease (M29)
YP_003800025.1	COGs: COG0111 phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR016040:IPR006140:IPR006139; KEGG: tex:Teth514_0124 phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: C7ITW9 phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_003800026.1	COGs: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; InterPro IPR013785:IPR000887; KEGG: lrh:LGG_02668 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; SPTR: A8RK19  uncharacterized protein; PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase
YP_003800027.1	COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR016152:IPR002178; KEGG: cbe:Cbei_0541  PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: C2JT07 PTS family fructose/mannitol porter component IIA; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_003800028.1	InterPro IPR003501; KEGG: phosphotransferase system lactose/cellobiose-specific IIB subunit; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; SPTR: C2JT08  uncharacterized protein; PFAM: PTS system, Lactose/Cellobiose specific IIB subunit
YP_003800029.1	COGs: COG3775 phosphotransferase system galactitol-specific IIC component; InterPro IPR013014:IPR004703; KEGG: PTS system galactitol-specific IIC component; PFAM: PTS system Galactitol-specific IIC component; SPTR: C2JT09 PTS family galactitol (Gat) porter component IIC; PFAM: PTS system sugar-specific permease component
YP_003800030.1	COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR018110:IPR013341:IPR013342; KEGG: lrh:LGG_02664 mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein; PFAM: Mandelate racemase/muconate lactonizing protein; SPTR: B5QPI4 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YP_003800031.1	COGs: COG1735 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001559:IPR017947; KEGG: aryldialkylphosphatase; PFAM: aryldialkylphosphatase; SPTR: C2JT11 Possible aryldialkylphosphatase; PFAM: phosphotriesterase family
YP_003800032.1	KEGG: apv:Apar_0015 hypothetical protein; SPTR: B9CLT3  uncharacterized protein
YP_003800033.1	COGs: COG1217 membrane GTPase involved in stress response; InterProIPR009000:IPR009022:IPR005225:IPR006298:IPR 000640:IPR000795:IPR004161; KEGG: apv:Apar_0016 GTP-binding protein TypA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; SPTR: B9CLT4 GTP-binding protein TypA/BipA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain
YP_003800034.1	COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: apv:Apar_0017 protein of unknown function UPF0126; PFAM: protein of unknown function UPF0126; SPTR: B9CLT5 Membrane protein; PFAM: UPF0126 domain
YP_003800035.1	KEGG: apv:Apar_0018 hypothetical protein; SPTR: C8W8L9  uncharacterized protein
YP_003800036.1	COGs: COG0360 Ribosomal protein S6; InterPro IPR000529:IPR014717:IPR020814; KEGG: apv:Apar_0019 ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; SPTR: C8W8M0 Ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6
YP_003800037.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR016027:IPR011344:IPR000424:IPR012340; KEGG: apv:Apar_0020 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: A4EBT9 Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_003800038.1	COGs: COG0238 Ribosomal protein S18; InterPro IPR001648:IPR018275; KEGG: apv:Apar_0021 ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: C8W8M2 Ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18
YP_003800039.1	InterPro IPR006162; KEGG: apv:Apar_0022 hypothetical protein; SPTR: C8W8M3  uncharacterized protein; PFAM: Predicted membrane protein (DUF2232)
YP_003800040.1	COGs: COG0359 Ribosomal protein L9; InterPro IPR020069:IPR009027:IPR020594:IPR020070; KEGG: apv:Apar_0023 ribosomal protein L9; PFAM: Ribosomal protein L9-like; SPTR: C2D9L7 Possible ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9
YP_003800041.1	COGs: COG0305 Replicative DNA helicase; InterProIPR007693:IPR007692:IPR007694:IPR003593:IPR 016136; KEGG: apv:Apar_0024 replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; SPTR: C2D9L8 Possible replicative DNA helicase DnaB; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase
YP_003800042.1	COGs: COG0104 Adenylosuccinate synthase; InterPro IPR001114:IPR018220; KEGG: apv:Apar_0025 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: B9CLU4 Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase
YP_003800043.1	COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: apv:Apar_0026 phosphoribosylamine/glycine ligase; PFAM: DegV family protein; SPTR: C2D9M0  uncharacterized protein; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family
YP_003800044.1	COGs: COG0151 phosphoribosylamine-glycine ligase; InterProIPR011054:IPR016185:IPR000115:IPR011761:IPR 013817:IPR013815:IPR013816:IPR020560:IPR020559:IPR020562:I PR020561; KEGG: apv:Apar_0026 phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain; PRIAM: phosphoribosylamine--glycine ligase; SPTR: C8W8M7 phosphoribosylamine/glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase, N domain; phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase
YP_003800045.1	InterPro IPR015797:IPR000086:IPR020084; KEGG: apv:Apar_0027 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: B9CLU6 Nudix hydrolase; PFAM: NUDIX domain
YP_003800046.1	KEGG: apv:Apar_0029 hypothetical protein; SPTR: C2D9M2  uncharacterized protein
YP_003800047.1	COGs: COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; InterPro IPR013749; KEGG: apv:Apar_0030 phosphomethylpyrimidine kinase type-1; PFAM: phosphomethylpyrimidine kinase type-1; SPTR: B9CLU9 Pyridoxamine kinase; PFAM: phosphomethylpyrimidine kinase; TIGRFAM: pyridoxal kinase
YP_003800048.1	COGs: COG0041 phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: apv:Apar_0031 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: phosphoribosylaminoimidazole carboxylase; SPTR: B9CLV0 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein
YP_003800049.1	COGs: COG4509 conserved hypothetical protein; InterPro IPR009835:IPR005754; KEGG: apv:Apar_0032 sortase, SrtB family; PFAM: peptidase C60 sortase A and B; SPTR: C8W8N3 Sortase, SrtB family; TIGRFAM: sortase, SrtB family; PFAM: Sortase family; Alphaherpesvirus glycoprotein E; TIGRFAM: sortase, SrtB family
YP_003800050.1	COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR005854:IPR017932:IPR000583:IPR000836; KEGG: apv:Apar_0033 amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; SPTR: B6GDX9  uncharacterized protein; TIGRFAM: amidophosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase
YP_003800051.1	COGs: COG0150 phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR016188:IPR010918:IPR004733:IPR000728; KEGG: apv:Apar_0034 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; PRIAM: phosphoribosylformylglycinamidine cyclo-ligase; SPTR: B9CLV3 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase
YP_003800052.1	COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR002376:IPR004607:IPR001555; KEGG: apv:Apar_0035 phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; SPTR: A4EBR3  uncharacterized protein; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent
YP_003800053.1	KEGG: ccu:Ccur_13770  collagen-binding protein; SPTR: C7MLA5  collagen-binding protein
YP_003800054.1	InterPro IPR008970:IPR019931; KEGG: ccu:Ccur_13770  collagen-binding protein; SPTR: C7MLA5  collagen-binding protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain; conserved repeat domain
YP_003800055.1	InterPro IPR000073; KEGG: shi:Shel_05300 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: B9CLW3 Hydrolase, alpha/beta fold family
YP_003800056.1	COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR001566:IPR010280; KEGG: apv:Apar_0053 RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; SPTR: B9CLW5 23S rRNA (Uracil-5-)-methyltransferase RumA; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA
YP_003800057.1	COGs: COG0039 Malate/lactate dehydrogenase; InterPro IPR015955:IPR016040:IPR001557:IPR001236; KEGG: apv:Apar_0054 lactate/malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; SPTR: C8W8Q2 Lactate/malate dehydrogenase; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain
YP_003800058.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: ere:EUBREC_0240 coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: B9CLV6 Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_003800059.1	COGs: COG0480 Translation elongation factors (GTPase); InterProIPR020568:IPR009022:IPR009000:IPR005225:IPR 014721:IPR000640:IPR000795:IPR004161:IPR005517; KEGG: apv:Apar_0059 small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; SPTR: C8W8Q7 Small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_003800060.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR002550:IPR005170; KEGG: apv:Apar_0064 protein of unknown function DUF21; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; SPTR: C8W8R2  uncharacterized protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain
YP_003800061.1	KEGG: apv:Apar_0065 hypothetical protein; SPTR: C2D8K9  uncharacterized protein
YP_003800062.1	KEGG: apv:Apar_0066 hypothetical protein; SPTR: B9CLY9  uncharacterized protein
YP_003800063.1	InterPro IPR007903; KEGG: apv:Apar_0067 hypothetical protein; PFAM: PRC-barrel domain protein; SPTR: B9CLZ0  uncharacterized protein; PFAM: PRC-barrel domain
YP_003800064.1	COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; InterPro IPR001046; KEGG: apv:Apar_0068 natural resistance-associated macrophage protein; PFAM: natural resistance-associated macrophage protein; SPTR: C8W8R6 Natural resistance-associated macrophage protein; PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters
YP_003800065.1	COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterProIPR011002:IPR011033:IPR006669:IPR000644:IPR 007903:IPR006668; KEGG: apv:Apar_0069 MgtE intracellular region; PFAM: MgtE intracellular region; PRC-barrel domain protein; CBS domain containing protein; SPTR: C2D9Q0 MgtE intracellular domain protein; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular N domain; CBS domain; PRC-barrel domain; TIGRFAM: Mg2+ transporter (mgtE)
YP_003800066.1	COGs: COG0176 Transaldolase; InterPro IPR013785:IPR018225:IPR001585; KEGG: apv:Apar_0092 transaldolase; PFAM: Transaldolase; SPTR: B9CM84 Fructose-6-phosphate aldolase 1; PFAM: Transaldolase; TIGRFAM: transaldolase, , TalC family
YP_003800067.1	COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: cac:CAC0113 sugar metabolism transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C2D9E1 DeoR family transcriptional regulator; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain
YP_003800068.1	COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR016152:IPR002178; KEGG: pay:PAU_02591  phosphotransferase enzyme II, a component sgca; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: C2D9D9 PTS family porter component IIA; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_003800069.1	COGs: COG3037 conserved hypothetical protein; InterPro IPR007333; KEGG: apv:Apar_0170  sugar-specific permease SgaT/UlaA; PFAM:  sugar-specific permease SgaT/UlaA; SPTR: C2D9D8 PTS system porter IIC component; PFAM: PTS system sugar-specific permease component
YP_003800070.1	COGs: COG3414 phosphotransferase system galactitol-specific IIB component; InterPro IPR013011:IPR003501; KEGG: apv:Apar_0171 phosphotransferase system lactose/cellobiose-specific IIB subunit; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; SPTR: C2D9D6 Protein-N(Pi)-phosphohistidine--sugar phosphotransferase; PFAM: PTS system, Lactose/Cellobiose specific IIB subunit
YP_003800071.1	COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: lrh:LGG_00405 transketolase, N-terminal subunit; PFAM: Transketolase domain protein; SPTR: C2D9D5 Transketolase; PFAM: Transketolase, thiamine diphosphate binding domain
YP_003800072.1	COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR009014:IPR015941:IPR005475:IPR005476; KEGG: lrh:LGG_00406 1-deoxyxylulose-5-phosphate synthase(transketolase, C-terminal subunit); PFAM: Transketolase domain protein; Transketolase central region; SPTR: C2D9D4 Transketolase; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_003800073.1	COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR011343:IPR013785:IPR002915; KEGG: apv:Apar_0134 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: B9CM19 Deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase
YP_003800074.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR017853:IPR002772:IPR001764; KEGG: sss:SSUSC84_1947  beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; SPTR: A6NRN0  uncharacterized protein; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain
YP_003800075.1	COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: apv:Apar_0070 LemA family protein; PFAM: LemA family protein; SPTR: C2D9D2 Membrane protein LemA; PFAM: LemA family
YP_003800076.1	COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR016193:IPR016192:IPR002125; KEGG: apv:Apar_0071 CMP/dCMP deaminase zinc-binding; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: B6GAD7  uncharacterized protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_003800077.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771:IPR013785; KEGG: lrl:LC705_00390 fructose/tagatose/ketose bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; PRIAM: Tagatose-bisphosphate aldolase; SPTR: C2D7V1 Tagatose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases
YP_003800078.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611; KEGG: kpn:KPN_00350  kinase; PFAM: PfkB domain protein; SPTR: B0P584  uncharacterized protein; PFAM: pfkB family carbohydrate kinase
YP_003800079.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011663; KEGG: esi:Exig_0480 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C2D7U4 GntR family transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003800080.1	COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR016152:IPR002178; KEGG: yen:YE1330 phosphotransferase enzyme II, A component; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: C2D7U9 PTS family porter component IIA; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_003800081.1	COGs: COG3414 phosphotransferase system galactitol-specific IIB component; InterPro IPR003501; KEGG: bcl:ABC3503 PTS system, mannitol-specific enzyme II, B component; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; SPTR: C2D7U8 PTS family porter component IIB; PFAM: PTS system, Lactose/Cellobiose specific IIB subunit
YP_003800082.1	COGs: COG3037 conserved hypothetical protein; InterPro IPR007333; KEGG: lrl:LC705_00388 PTS system, ascorbate-specific IIC component; PFAM:  sugar-specific permease SgaT/UlaA; SPTR: C2D7U7 PTS family porter component IIC; PFAM: PTS system sugar-specific permease component
YP_003800083.1	KEGG: lrl:LC705_00389 hypothetical protein; SPTR: B0MET4  uncharacterized protein
YP_003800084.1	KEGG: lrl:LC705_00391 kinase; SPTR: C2D7U5  uncharacterized protein
YP_003800085.1	COGs: COG1171 Threonine dehydratase; InterPro IPR001926; KEGG: aoe:Clos_0846 pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: A8MER6 Pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme
YP_003800086.1	COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR002478:IPR000241; KEGG: apv:Apar_0072 SAM-dependent methyltransferase; PFAM:  RNA methylase; SMART: PUA domain containing protein; SPTR: C8W8S0 SAM-dependent methyltransferase; PFAM: S-adenosylmethionine-dependent methyltransferase
YP_003800087.1	COGs: COG1966 Carbon starvation protein predicted membrane protein; InterPro IPR003706; KEGG: eel:EUBELI_01881 carbon starvation protein; PFAM: carbon starvation protein CstA; SPTR: B6G9X1  uncharacterized protein; PFAM: Carbon starvation protein CstA
YP_003800088.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021:IPR001650:IPR014014:IPR014001:IPR 000629:IPR011545; KEGG: apv:Apar_0074 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C8W8S2 DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_003800089.1	COGs: COG1897 Homoserine trans-succinylase; InterPro IPR005697; KEGG: apv:Apar_0075 homoserine O-succinyltransferase; PFAM: homoserine O-succinyltransferase; PRIAM: Homoserine O-succinyltransferase; SPTR: B9CLZ8 Homoserine O-succinyltransferase; TIGRFAM: homoserine O-succinyltransferase; PFAM: Homoserine O-succinyltransferase; TIGRFAM: homoserine O-succinyltransferase
YP_003800090.1	COGs: COG0622 phosphoesterase; InterPro IPR000979:IPR004843; KEGG: apv:Apar_0076 phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; SPTR: B9CM08 phosphodiesterase YfcE; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family
YP_003800091.1	COGs: COG0443 Molecular chaperone; InterPro IPR012725:IPR001023:IPR018181:IPR013126; KEGG: apv:Apar_0094 chaperone protein DnaK; PFAM: Heat shock protein 70; SPTR: C2D8D8 Chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK
YP_003800092.1	COGs: COG0576 Molecular chaperone GrpE (heat shock protein); InterPro IPR009012:IPR013805:IPR000740; KEGG: apv:Apar_0095 GrpE protein; PFAM: GrpE protein; SPTR: B9CM92 Protein grpE; PFAM: GrpE
YP_003800093.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623:IPR008971:IPR003095:IPR002939; KEGG: apv:Apar_0096 chaperone DnaJ domain protein; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: B9CM93 Chaperone protein DnaJ; PFAM: DnaJ C terminal region; DnaJ domain
YP_003800094.1	COGs: COG0789 transcriptional regulator protein; InterPro IPR009061:IPR000551; KEGG: apv:Apar_0097 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C2D8E1 Possible glutamine synthetase transcriptional repressor; PFAM: MerR family regulatory protein
YP_003800095.1	COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: apv:Apar_0055 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: C8W8Q3 Band 7 protein; PFAM: SPFH domain / Band 7 family
YP_003800096.1	COGs: COG4877 conserved hypothetical protein; KEGG: apv:Apar_0056 hypothetical protein; SPTR: C4F7V2  uncharacterized protein
YP_003800097.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR017730:IPR003593:IPR001270:IPR018368:IPR 004176:IPR003959:IPR013093:IPR019489; KEGG: apv:Apar_0100 ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: B9CM96 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB
YP_003800098.1	COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: ele:Elen_1639 PASTA domain containing protein; PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; SPTR: C8WHL6 PASTA domain containing protein; PFAM: PASTA domain
YP_003800099.1	KEGG: apv:Apar_0101 hypothetical protein; SPTR: B6GAI6  uncharacterized protein
YP_003800100.1	KEGG: apv:Apar_0103 hypothetical protein; SPTR: B9CM99  uncharacterized protein
YP_003800101.1	COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR008978:IPR002068; KEGG: apv:Apar_0104 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: C2D8E4 Possible heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family
YP_003800102.1	COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: apv:Apar_0105 beta-lactamase domain protein; SPTR: B9CMA1 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003800103.1	COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR012795:IPR012796:IPR014729:IPR011063; KEGG: apv:Apar_0106 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; SPTR: B9CMA2 tRNA(Ile)-lysidine synthase (TRNA(Ile)-lysidinesynthetase) (TRNA(Ile)-2-lysyl-cytidine synthase); TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain
YP_003800104.1	COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR005904:IPR000836; KEGG: apv:Apar_0107 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: C2D8E6 Hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase
YP_003800105.1	COGs: COG0465 ATP-dependent Zn protease; InterProIPR005936:IPR003593:IPR003960:IPR011546:IPR 003959:IPR000642; KEGG: ccu:Ccur_02180 membrane protease FtsH catalytic subunit; PFAM: AAA ATPase central domain protein; peptidase M41 FtsH extracellular; peptidase M41; PRIAM: Microtubule-severing ATPase; SMART: AAA ATPase; SPTR: A4EB64  uncharacterized protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH
YP_003800106.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: tde:TDE0358 cinnamoyl ester hydrolase; SPTR: C0EAD6  uncharacterized protein; PFAM: Prolyl oligopeptidase family
YP_003800107.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR015424:IPR015421:IPR015422:IPR001176:IPR 004838:IPR004839; KEGG: apv:Apar_0108 aminotransferase class I and II; PFAM: aminotransferase class I and II; SPTR: B9CMA4 Aspartate aminotransferase; PFAM: Aminotransferase class I and II
YP_003800108.1	COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR016195:IPR003141:IPR004013; KEGG: apv:Apar_0109 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: C4FC22  uncharacterized protein; PFAM: PHP domain
YP_003800109.1	COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: cpf:CPF_0249 NAD-dependent deacetylase; PFAM: Silent information regulator protein Sir2; SPTR: A4EBP4  uncharacterized protein; PFAM: Sir2 family
YP_003800110.1	COGs: COG4667 esterase of the alpha-beta hydrolase superfamily; InterPro IPR016035:IPR002641; KEGG: mlu:Mlut_15620 predicted esterase of the alpha-beta hydrolase superfamily; PFAM: Patatin; SPTR: C5CBD1 Predicted esterase of the alpha-beta hydrolase superfamily; PFAM: Patatin-like phospholipase
YP_003800111.1	COGs: COG0708 Exonuclease III; InterProIPR005135:IPR000097:IPR004808:IPR020847:IPR 020848; KEGG: apv:Apar_0110 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: Exodeoxyribonuclease III; SPTR: B9CMA6 Exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth)
YP_003800112.1	COGs: COG0302 GTP cyclohydrolase I; InterPro IPR001474:IPR018234:IPR020602; KEGG: ccu:Ccur_11630 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: C7MPL0 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I
YP_003800113.1	COGs: COG0294 Dihydropteroate synthase; InterPro IPR011005:IPR000550:IPR006390:IPR000489; KEGG: apv:Apar_0111 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; SPTR: B9CMA7 Dihydropteroate synthase 1; TIGRFAM: dihydropteroate synthase; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: Pterin binding enzyme; 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: dihydropteroate synthase; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_003800114.1	KEGG: apv:Apar_0112 hypothetical protein; SPTR: B9CMA8  uncharacterized protein
YP_003800115.1	COGs: COG1521  transcriptional regulator protein; InterPro IPR004619; KEGG: apv:Apar_0113  transcriptional acitvator, Baf family; PFAM: Bvg accessory factor; SPTR: C2D8F6 Pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III
YP_003800116.1	COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: apv:Apar_0114 ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: C8W8W2 Ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31
YP_003800117.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011663; KEGG: apv:Apar_0129 UbiC transcription regulator-associated domain protein; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C2D6W6 GntR family transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003800118.1	COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652:IPR013785; KEGG: lca:LSEI_2703 triosephosphate isomerase; SPTR: B9CMD4 Triosephosphate isomerase; PFAM: Triosephosphate isomerase
YP_003800119.1	COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: sds:SDEG_0310 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: C2D6W8  uncharacterized protein; PFAM: Uncharacterised protein family UPF0047
YP_003800120.1	KEGG: apv:Apar_0151 phosphotransferase system lactose/cellobiose-specific IIB subunit; SPTR: B9CMD6 PTS system, IIb component; PFAM: PTS system, Lactose/Cellobiose specific IIB subunit
YP_003800121.1	COGs: COG3775 phosphotransferase system galactitol-specific IIC component; InterPro IPR013014:IPR004703; KEGG: apv:Apar_0152 PTS system galactitol-specific IIC component; PFAM: PTS system Galactitol-specific IIC component; SPTR: B9CMD7 PTS system, IIc component; PFAM: PTS system sugar-specific permease component
YP_003800122.1	KEGG: cdl:CDR20291_0033 hypothetical protein; SPTR: C2D6X2  uncharacterized protein
YP_003800123.1	COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: cdf:CD0045  sugar-phosphate aldolase; PFAM: class II aldolase/adducin family protein; SPTR: B9CMD8 L-ribulose-5-phosphate 4-epimerase; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase
YP_003800124.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR013785:IPR000771; KEGG: ele:Elen_1230 ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; SPTR: C2D6X3 Fructose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases
YP_003800125.1	COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR016152:IPR002178; KEGG: apv:Apar_0154  PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: C2D6X4 PTS family fructose/mannitol porter component IIA; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_003800126.1	KEGG: ele:Elen_1929 trigger factor; SPTR: C2ASN6 Trigger factor; PFAM: Bacterial trigger factor protein (TF) C-terminus
YP_003800127.1	KEGG: similar to ADP-ribosyltransferase 1
YP_003800128.1	COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; InterPro IPR006076; KEGG: shi:Shel_07360 FAD-dependent dehydrogenase; PFAM: FAD dependent oxidoreductase; SPTR: C7N4F8 FAD-dependent dehydrogenase; PFAM: FAD binding domain
YP_003800129.1	COGs: COG1725 transcriptional regulator protein; InterPro IPR000524:IPR011991; KEGG: nth:Nther_0732 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C7GGD5 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family
YP_003800130.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439; KEGG: gka:GK1621 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SPTR: A6NQ67  uncharacterized protein
YP_003800131.1	KEGG: gtn:GTNG_1469 hypothetical protein; SPTR: A6NQ68  uncharacterized protein
YP_003800132.1	COGs: COG0216 Protein chain release factor A; InterPro IPR004373:IPR005139:IPR000352; KEGG: apv:Apar_1310 peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; SPTR: C8W8E3 Peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1
YP_003800133.1	COGs: COG2890 Methylase of polypeptide chain release factors; InterProIPR017945:IPR004556:IPR019874:IPR004388:IPR 006070:IPR002052:IPR007848; KEGG: apv:Apar_1309 modification methylase, HemK family; PFAM: SUA5/yciO/yrdC domain; methyltransferase small; SPTR: C2D8G1  uncharacterized protein; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; Sua5/YciO/YrdC/YwlC family protein; PFAM: Methyltransferase small domain; yrdC domain; TIGRFAM: HemK family  methylases; Sua5/YciO/YrdC/YwlC family protein; protein-(glutamine-N5) methyltransferase, release factor-specific
YP_003800134.1	COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR003500:IPR004785; KEGG: apv:Apar_1307 sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; SPTR: C2D8G2 Ribose-5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family
YP_003800135.1	COGs: COG0035 Uracil phosphoribosyltransferase; InterPro IPR005765:IPR000836; KEGG: apv:Apar_1306 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: C2D8G3 Uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase
YP_003800136.1	COGs: COG1882 Pyruvate-formate lyase; InterPro IPR001150:IPR004184; KEGG: cbk:CLL_A1723 4-hydroxyphenylacetate decarboxylase, catalytic subunit; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; PRIAM: Formate C-acetyltransferase; SPTR: B1BA70 HpdB protein; PFAM: Glycine radical; Pyruvate formate lyase
YP_003800137.1	COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR016196:IPR011701; KEGG: dde:Dde_3053 sugar phosphate permease-like; PFAM: major facilitator superfamily MFS_1; SPTR: Q30WU9 Sugar phosphate permease-like; PFAM: Major Facilitator Superfamily
YP_003800138.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterProIPR012839:IPR017896:IPR011352:IPR017900:IPR 001989:IPR007197:IPR001450; KEGG: cno:NT01CX_0497 pyruvate formate-lyase; PFAM: Radical SAM domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: [Formate-C-acetyltransferase]-activating enzyme; SPTR: B1BA71 Pyruvate formate-lyase-activating enzyme; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM superfamily; TIGRFAM: glycyl-radical enzyme activating protein family
YP_003800139.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR016032:IPR000792:IPR011991; KEGG: chl:Chy400_3486 two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: B9ASK7  uncharacterized protein; PFAM: Bacterial regulatory proteins, luxR family
YP_003800140.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594:IPR009082:IPR005467:IPR003661:IPR 004358:IPR003660; KEGG: cbt:CLH_1874 two component system histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C5UV34 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003800141.1	COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR011006:IPR001789; KEGG: hau:Haur_2699 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q1Q2E4  uncharacterized protein; PFAM: Response regulator receiver domain
YP_003800142.1	KEGG: hypothetical protein; SPTR: C0FMA3  uncharacterized protein
YP_003800143.1	KEGG: hypothetical protein; SPTR: C4C605  uncharacterized protein
YP_003800144.1	COGs: COG0356 F0F1-type ATP synthase subunit a; InterPro IPR000568; KEGG: apv:Apar_1304 ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; SPTR: B9CLF2 ATP synthase subunit a; TIGRFAM: ATP synthase F0, A subunit; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
YP_003800145.1	InterPro IPR002379:IPR005953:IPR000454:IPR020537; KEGG: ele:Elen_1040 H+transporting two-sector ATPase C subunit; PFAM: H+transporting two-sector ATPase C subunit; SPTR: B9CLF1 ATP synthase subunit c; TIGRFAM: ATP synthase F0, C subunit; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c
YP_003800146.1	COGs: COG0711 F0F1-type ATP synthase subunit b; InterPro IPR005864:IPR002146; KEGG: apv:Apar_1302 ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: B9CLF0 ATP synthase subunit b; TIGRFAM: ATP synthase F0, B subunit; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b
YP_003800147.1	COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); InterPro IPR000711; KEGG: apv:Apar_1301 H+transporting two-sector ATPase delta (OSCP) subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; SPTR: C2D8G8  uncharacterized protein; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit
YP_003800148.1	COGs: COG0056 F0F1-type ATP synthase alpha subunit; InterProIPR000793:IPR018118:IPR005294:IPR020003:IPR 004100:IPR000194; KEGG: apv:Apar_1300 ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; PRIAM: H(+)-transporting two-sector ATPase; SPTR: C2D8G9 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit
YP_003800149.1	COGs: COG0224 F0F1-type ATP synthase gamma subunit; InterPro IPR000131; KEGG: apv:Apar_1299 ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; SPTR: B9CLE7 ATP synthase gamma chain; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit
YP_003800150.1	COGs: COG0055 F0F1-type ATP synthase beta subunit; InterProIPR000793:IPR018118:IPR005722:IPR003593:IPR 020003:IPR018073:IPR004100:IPR000194; KEGG: apv:Apar_1298 ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; PRIAM: H(+)-transporting two-sector ATPase; SMART: AAA ATPase; SPTR: C8W8D2 ATP synthase F1, beta subunit; TIGRFAM: ATP synthase F1, beta subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit
YP_003800151.1	COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); InterPro IPR020546:IPR001469; KEGG: apv:Apar_1297 ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like; SPTR: B9CLE5 ATP synthase F1, epsilon subunit; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria)
YP_003800152.1	COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; InterPro IPR013792:IPR005750:IPR001986; KEGG: apv:Apar_1296 UDP-N-acetylglucosamine1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); SPTR: C2D8H3 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_003800153.1	COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR011991; KEGG: apv:Apar_1294 iron (metal) dependent repressor, DtxR family; PFAM: iron dependent repressor; SMART: iron dependent repressor; SPTR: C2D8H4 Manganese (Mn2+) transporter transcriptional regulator; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain
YP_003800154.1	COGs: COG1210 UDP-glucose pyrophosphorylase; InterPro IPR005835; KEGG: apv:Apar_1293 nucleotidyl transferase; PFAM: Nucleotidyl transferase; SPTR: B9CLE0 Utp--glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase
YP_003800155.1	COGs: COG1109 phosphomannomutase; InterProIPR016055:IPR005844:IPR005845:IPR005846:IPR 005843; KEGG: apv:Apar_1292 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: B9CLD9 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_003800156.1	KEGG: apv:Apar_1291 transcriptional regulator, SARP family; SPTR: B9CNF2  uncharacterized protein; PFAM: Bacterial transcriptional activator domain
YP_003800157.1	COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); InterProIPR011116:IPR011130:IPR000185:IPR014018:IPR 011115:IPR004027; KEGG: apv:Apar_1290 preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein; SPTR: C2D8N2 Protein translocase subunit secA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit
YP_003800158.1	COGs: COG1186 Protein chain release factor B; InterPro IPR004374:IPR000352:IPR005139; KEGG: apv:Apar_1289 peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; SPTR: C8W8C3 Peptide chain release factor 2; TIGRFAM: peptide chain release factor 2; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2
YP_003800159.1	COGs: COG1284 conserved hypothetical protein; InterPro IPR003740:IPR019264; KEGG: apv:Apar_1288 protein of unknown function DUF161; PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; SPTR: C2D8N4 Protein of hypothetical function DUF161; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179)
YP_003800160.1	COGs: COG0176 Transaldolase; InterPro IPR013785:IPR001585; KEGG: apv:Apar_0332 transaldolase; PFAM: Transaldolase; PRIAM: Transaldolase; SPTR: C2D8N6 Transaldolase; PFAM: Transaldolase; TIGRFAM: transaldolase, , TalC family
YP_003800161.1	COGs: COG2884 ATPase involved in cell division; InterPro IPR005286:IPR003439:IPR003593:IPR017871; KEGG: apv:Apar_1279 cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C2D8N7 Cell-division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE; Type II (General) Secretory Pathway (IISP) Family protein
YP_003800162.1	COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: apv:Apar_1278 cell division protein FtsX; PFAM: protein of unknown function DUF214; SPTR: C2D8N8 Possible cell division protein FtsX; PFAM: Predicted permease
YP_003800163.1	COGs: COG0557 Exoribonuclease R; InterProIPR016027:IPR004476:IPR003029:IPR012340:IPR 001900; KEGG: apv:Apar_1274 VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; RNA binding S1 domain protein; PRIAM: Exoribonuclease II; SPTR: B9CNE4 Ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; PFAM: RNB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases
YP_003800164.1	InterPro IPR013026:IPR011990; KEGG: apv:Apar_1273 hypothetical protein; SPTR: B9CNE3 Tetratricopeptide repeat domain protein
YP_003800165.1	COGs: COG0691 tmRNA-binding protein; InterPro IPR000037:IPR020081; KEGG: apv:Apar_1272 SsrA-binding protein; PFAM: SmpB protein; SPTR: C8W8A6 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein
YP_003800166.1	InterPro IPR004039; KEGG: apv:Apar_1271 rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: A4EAD6  uncharacterized protein; PFAM: Rubredoxin
YP_003800167.1	COGs: COG3619 membrane protein; InterPro IPR010699; KEGG: apv:Apar_1270 protein of unknown function DUF1275; PFAM: protein of unknown function DUF1275; SPTR: B9CNE0  uncharacterized protein; PFAM: Protein of unknown function (DUF1275)
YP_003800168.1	InterPro IPR011010:IPR013762:IPR002104; KEGG: bcr:BCAH187_A5304 site-specific recombinase, phage integrase family; PFAM: integrase family protein; SPTR: C5EDK9  uncharacterized protein; PFAM: Phage integrase family
YP_003800169.1	InterPro IPR010982:IPR001387; KEGG: shi:Shel_25650 predicted transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C7N2R4 Predicted transcriptional regulator; PFAM: Helix-turn-helix
YP_003800170.1	KEGG: bad:BAD_0201 hypothetical protein; SPTR: B9CLW1  uncharacterized protein
YP_003800171.1	COGs: COG4667 esterase of the alpha-beta hydrolase superfamily; InterPro IPR016035:IPR002641; KEGG: apv:Apar_1253 patatin; PFAM: Patatin; SPTR: B9CMF2 Serine protease; PFAM: Patatin-like phospholipase
YP_003800172.1	COGs: COG0102 Ribosomal protein L13; InterPro IPR005822:IPR005823; KEGG: apv:Apar_1250 ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: C8W885 Ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type
YP_003800173.1	COGs: COG0103 Ribosomal protein S9; InterPro IPR020568:IPR014721:IPR020574:IPR000754; KEGG: apv:Apar_1249 ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: C8W884 Ribosomal protein S9; PFAM: Ribosomal protein S9/S16
YP_003800174.1	COGs: COG1109 phosphomannomutase; InterProIPR016055:IPR006352:IPR005841:IPR016066:IPR 005844:IPR005845:IPR005846:IPR005843; KEGG: apv:Apar_1248 phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; PRIAM: phosphoglucosamine mutase; SPTR: C2D8P7 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase
YP_003800175.1	COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; InterPro IPR005855:IPR017932:IPR000583:IPR001347; KEGG: ccu:Ccur_04700 glutamine--fructose-6-phosphate transaminase; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; SPTR: C2D7F4 Glutamine--fructose-6-phosphate transaminase (Isomerizing); TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
YP_003800176.1	COGs: COG0736 phosphopantetheinyl transferase (holo-ACP synthase); InterPro IPR008278:IPR002582:IPR004568; KEGG: apv:Apar_1247 holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: B9CMF6 Holo-(Acyl-carrier-protein) synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-[acyl-carrier-protein] synthase
YP_003800177.1	COGs: COG0063 sugar kinase; InterPro IPR004443:IPR000631:IPR017953; KEGG: apv:Apar_1246 carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; SPTR: B9CMF7 Carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF N-terminal region; yjeF C-terminal region, hydroxyethylthiazole kinase-related
YP_003800178.1	COGs: COG0787 Alanine racemase; InterProIPR009006:IPR000821:IPR020622:IPR001608:IPR 011079; KEGG: apv:Apar_1245 alanine racemase; PFAM: alanine racemase domain protein; PRIAM: Alanine racemase; SPTR: B9CMF8 Alanine racemase; TIGRFAM: alanine racemase; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase
YP_003800179.1	COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122:IPR005273; KEGG: apv:Apar_1244 phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; SPTR: A4EBV6  uncharacterized protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4
YP_003800180.1	COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: apv:Apar_1243 protein of unknown function UPF0079; PFAM: protein of unknown function UPF0079; SPTR: C8W878  uncharacterized protein; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: conserved hypothetical nucleotide-binding protein
YP_003800181.1	COGs: COG0533 Metal-dependent protease with possible chaperone activity; InterProIPR016181:IPR006464:IPR017861:IPR000182:IPR 000905; KEGG: apv:Apar_0181 metalloendopeptidase, glycoprotease family; PFAM: GCN5-related N-acetyltransferase; peptidase M22 glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: B9CN99  O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; ribosomal-protein-alanine acetyltransferase; PFAM: Acetyltransferase (GNAT) family; Glycoprotease family; TIGRFAM: metalloendopeptidase, , glycoprotease family; ribosomal-protein-alanine acetyltransferase
YP_003800182.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR006311:IPR017909:IPR001638; KEGG: acl:ACL_1251 ABC-type transport system, substrate-binding and permease component; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: A4EBF0  uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003800183.1	COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515:IPR002345; KEGG: acl:ACL_1251 ABC-type transport system, substrate-binding and permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A4EBF1  uncharacterized protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_003800184.1	COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: dhd:Dhaf_2298 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A4EBF2  uncharacterized protein; PFAM: ABC transporter
YP_003800185.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR011650:IPR001261:IPR002933; KEGG: apv:Apar_0748 peptidase M20; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: A4EBF3  uncharacterized protein; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain
YP_003800186.1	InterPro IPR011051:IPR014710:IPR013096; KEGG: swi:Swit_5057 cupin 2 domain-containing protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: A5VHA4 Cupin 2, conserved barrel domain protein; PFAM: Cupin domain
YP_003800187.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002347:IPR002198; KEGG: afu:AF1207 2-deoxy-D-gluconate 3-dehydrogenase (KduD); PFAM: short-chain dehydrogenase/reductase SDR; SPTR: O29061 2-deoxy-D-gluconate 3-dehydrogenase (KduD); PFAM: short chain dehydrogenase
YP_003800188.1	InterPro IPR010451; KEGG: rlg:Rleg_5523 acetoacetate decarboxylase; PFAM: Acetoacetate decarboxylase; SPTR: B1SYR7  uncharacterized protein; PFAM: Acetoacetate decarboxylase (ADC)
YP_003800189.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016161:IPR010061:IPR016162:IPR015590; KEGG: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: B0PE38  uncharacterized protein; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: methylmalonic acid semialdehyde dehydrogenase
YP_003800190.1	COGs: COG2271 Sugar phosphate permease; InterPro IPR016196:IPR011701; KEGG: dsy:DSY1454 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: C2BY46 MFS transporter; PFAM: Major Facilitator Superfamily
YP_003800191.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: cbe:Cbei_2230 enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: A6LVL5 Enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_003800192.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR011991:IPR005119; KEGG: sen:SACE_0823 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: A4F7Y9 Transcriptional regulator, LysR family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_003800193.1	COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR011059:IPR013108; KEGG: ele:Elen_2060 amidohydrolase 3; PFAM: Amidohydrolase 3; SPTR: C8WIY2 Amidohydrolase 3; PFAM: Amidohydrolase family
YP_003800194.1	COGs: COG0171 NAD synthase; InterPro IPR003010:IPR003694:IPR014729:IPR014445; KEGG: apv:Apar_0182 NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: B9CN98 Glutamine-dependent NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase
YP_003800195.1	COGs: COG0234 Co-chaperonin GroES (HSP10); InterPro IPR011032:IPR020818:IPR001476:IPR018369; KEGG: apv:Apar_0183 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SPTR: C2D880 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit
YP_003800196.1	COGs: COG0459 Chaperonin GroEL (HSP60 family); InterPro IPR002423:IPR001844:IPR018370; KEGG: apv:Apar_0184 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: B9CN95 60 kDa chaperonin; TIGRFAM: chaperonin GroEL; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL
YP_003800197.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterProIPR017896:IPR011352:IPR017900:IPR001989:IPR 007197:IPR001450; KEGG: apv:Apar_0135 (formate-C-acetyltransferase)-activating enzyme; PFAM: Radical SAM domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C8W8Y3 (Formate-C-acetyltransferase)-activating enzyme; PFAM: Radical SAM superfamily
YP_003800198.1	KEGG: apv:Apar_0136 hypothetical protein; SPTR: C8W8Y4  uncharacterized protein; PFAM: Protein of unknown function (DUF3029)
YP_003800199.1	COGs: COG2313 Uncharacterized protein involved in pigment biosynthesis; InterPro IPR007342; KEGG: apv:Apar_0138 indigoidine synthase A family protein; PFAM: Indigoidine synthase A family protein; SPTR: B0PDC2  uncharacterized protein; PFAM: Indigoidine synthase A like protein
YP_003800200.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR000792:IPR002173:IPR000835:IPR011611; KEGG: apv:Apar_0139 transcriptional regulator, MarR family; PFAM: PfkB domain protein; regulatory protein MarR; SMART: regulatory protein LuxR; SPTR: B0PDC1  uncharacterized protein; PFAM: pfkB family carbohydrate kinase; Bacterial regulatory proteins, luxR family
YP_003800201.1	COGs: COG1015 phosphopentomutase; InterProIPR017850:IPR010045:IPR017849:IPR013553:IPR 006124; KEGG: apv:Apar_0140 phosphopentomutase; PFAM: phosphopentomutase domain protein; metalloenzyme domain protein; PRIAM: phosphopentomutase; SPTR: B9CM23 phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: Metalloenzyme superfamily; TIGRFAM: phosphopentomutase
YP_003800202.1	COGs: COG0813 Purine-nucleoside phosphorylase; InterPro IPR004402:IPR018016:IPR000845; KEGG: apv:Apar_0141 purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; SPTR: B9CM24 Purine nucleoside phosphorylase; TIGRFAM: purine nucleoside phosphorylase; PFAM: phosphorylase superfamily; TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD)
YP_003800203.1	COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR006311:IPR017909:IPR019546:IPR003760; KEGG: apv:Apar_0142 basic membrane lipoprotein; PFAM: basic membrane lipoprotein; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: C8W8Z0 Basic membrane lipoprotein; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Basic membrane protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003800204.1	COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; InterPro IPR003439:IPR003593:IPR017871; KEGG: apv:Apar_0143 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B9CM26 Ribose import ATP-binding protein RbsA; PFAM: ABC transporter
YP_003800205.1	COGs: COG4603 ABC-type uncharacterized transport system permease component; InterPro IPR001851; KEGG: apv:Apar_0144 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: B9CM27 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003800206.1	COGs: COG1079 ABC-type transport system permease component; InterPro IPR001851; KEGG: apv:Apar_0145 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C8W8Z3 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003800207.1	COGs: COG0295 Cytidine deaminase; InterPro IPR016193:IPR006262:IPR016192:IPR002125; KEGG: cth:Cthe_1582 cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: B9CM29 Cytidine deaminase; TIGRFAM: cytidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric
YP_003800208.1	COGs: COG0213 Thymidine phosphorylase; InterProIPR000312:IPR013102:IPR017459:IPR018090:IPR 020072:IPR000053:IPR017872; KEGG: apv:Apar_0147 pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; Pyrimidine nucleoside phosphorylase domain; PRIAM: Pyrimidine-nucleoside phosphorylase; SPTR: B9CM30 Pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: Glycosyl transferase family, a/b domain; Pyrimidine nucleoside phosphorylase C-terminal domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: pyrimidine-nucleoside phosphorylase
YP_003800209.1	InterPro IPR017896:IPR017900:IPR001450; KEGG: apv:Apar_0185 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C2D7W3  uncharacterized protein
YP_003800210.1	COGs: COG0012 GTPase probable translation factor; InterProIPR012676:IPR004396:IPR012675:IPR006073:IPR 002917:IPR013029; KEGG: apv:Apar_0186 GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP-binding protein HSR1-related; SPTR: C2D7W2 GTP-binding protein; TIGRFAM: GTP-binding protein YchF; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF
YP_003800211.1	COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: apv:Apar_0187 cell envelope-related transcriptional attenuator; PFAM: cell envelope-related transcriptional attenuator; SPTR: C2D7W0  uncharacterized protein; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain
YP_003800212.1	COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: apv:Apar_0187 cell envelope-related transcriptional attenuator; PFAM: cell envelope-related transcriptional attenuator; SPTR: C2D7W0  uncharacterized protein; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain
YP_003800213.1	COGs: COG0519 GMP synthase PP-ATPase domain/subunit; InterProIPR004739:IPR001674:IPR017926:IPR014729:IPR 011702:IPR001317:IPR000991:IPR018318; KEGG: apv:Apar_0189 GMP synthase, large subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; tRNA methyl transferase-like; SPTR: C8W937 GMP synthase, large subunit; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit
YP_003800214.1	KEGG: apv:Apar_0204 hypothetical protein; SPTR: C8NHA7 50S ribosomal protein L31 type B
YP_003800215.1	KEGG: apv:Apar_0205 hypothetical protein; SPTR: C8NHA6  uncharacterized protein
YP_003800216.1	KEGG: bad:BAD_1141 phosphate ABC transporter; SPTR: A7A8T0  uncharacterized protein
YP_003800217.1	KEGG: bad:BAD_1140 hypothetical protein; SPTR: A7A8S9  uncharacterized protein
YP_003800218.1	KEGG: ccu:Ccur_13950 hypothetical protein; SPTR: C7MLC2  uncharacterized protein
YP_003800219.1	InterPro IPR014942; KEGG: apr:Apre_0680 domain of unknown function DUF1814; PFAM: Domain of unknown function DUF1814; SPTR: B1C0W0  uncharacterized protein; PFAM: Domain of unknown function (DUF1814)
YP_003800220.1	KEGG: eel:EUBELI_01741 hypothetical protein; SPTR: C4Z3E1  uncharacterized protein
YP_003800221.1	COGs: COG3593 ATP-dependent endonuclease of the OLD family; KEGG: cha:CHAB381_0630 hypothetical protein; SPTR: A7I126  uncharacterized protein
YP_003800222.1	InterPro IPR006442; KEGG: ccu:Ccur_13030 hypothetical protein; SPTR: A7BET3  uncharacterized protein; TIGRFAM: prevent-host-death family protein; PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein
YP_003800223.1	KEGG: mpa:MAP3815 hypothetical protein; SPTR: B6XTN6  uncharacterized protein
YP_003800224.1	InterPro IPR001226; KEGG: apr:Apre_0423  flavodoxin; SPTR: C7RG60  flavodoxin
YP_003800225.1	KEGG: scl:sce5042 hypothetical protein
YP_003800226.1	KEGG: det:DET1117 hypothetical protein; SPTR: C6LJW5  uncharacterized protein
YP_003800227.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR009057:IPR018060:IPR012287:IPR020449:IPR 018062:IPR000005; KEGG: ele:Elen_0328 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C8WKL2 Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_003800228.1	InterPro IPR011733; KEGG: ele:Elen_0329 hypothetical protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein; SPTR: C8WKL3  uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185
YP_003800229.1	COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: ele:Elen_0330 cobalt transport protein; PFAM: cobalt transport protein; SPTR: C8WKL4 Cobalt transport protein; PFAM: Cobalt transport protein
YP_003800230.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: ele:Elen_0331 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8WKL5 ABC transporter related; PFAM: ABC transporter
YP_003800231.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR011527:IPR003439:IPR017940:IPR003593:IPR 017871:IPR001140; KEGG: ele:Elen_0338 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C8WKM2 ABC transporter related; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003800232.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR011527:IPR003439:IPR017940:IPR003593:IPR 017871; KEGG: ele:Elen_0338 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8WKM2 ABC transporter related; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003800233.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: dhd:Dhaf_1767 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8PTX7  ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_003800234.1	COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: ele:Elen_0330 cobalt transport protein; PFAM: cobalt transport protein; SPTR: C8PTX6  transporter; PFAM: Cobalt transport protein
YP_003800235.1	InterPro IPR011733; KEGG: cbe:Cbei_3098 hypothetical protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein; SPTR: C8PTX5 Conserved hypothetical integral membrane protein TIGR02185; TIGRFAM: conserved hypothetical protein; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185
YP_003800236.1	COGs: COG1309 Transcriptional regulator; InterPro IPR009057:IPR001647:IPR012287; KEGG: dtu:Dtur_0355 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: C8PTX3 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003800237.1	COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: ele:Elen_1397 filamentation induced by cAMP protein Fic; PFAM: filamentation induced by cAMP protein Fic; SPTR: C8WGX5 Filamentation induced by cAMP protein Fic; PFAM: IclR helix-turn-helix domain; Fic/DOC family
YP_003800238.1	InterPro IPR006626:IPR001412:IPR005653; KEGG: mmw:Mmwyl1_0481 filamentous haemagglutinin outer membrane protein; PFAM: OstA family protein; SPTR: B7CDR1  uncharacterized protein (Fragment)
YP_003800239.1	COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013216; KEGG: msm:MSMEG_4708  methyltransferase; PFAM: Methyltransferase type 11; SPTR: C5VFP8 Methyltransferase type 12; PFAM: Methyltransferase domain
YP_003800240.1	KEGG: fal:FRAAL5697 alternative primary sigma 70 transcriptional factor; SPTR: Q2J784 RNA polymerase sigma factor
YP_003800241.1	KEGG: taf:THA_1682 rubrerythrin, SPTR: A1XDA1 STIP
YP_003800242.1	KEGG: cth:Cthe_1430 hypothetical protein; SPTR: B6FNR5  uncharacterized protein
YP_003800243.1	KEGG: tko:TK1492 hypothetical protein; SPTR: C9BHL1  uncharacterized protein
YP_003800244.1	InterPro IPR007337; KEGG: swo:Swol_1074  DNA-damage-inducibile protein; PFAM: RelB antitoxin; SPTR: B9CME2 RelB antitoxin; TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; TIGRFAM: addiction module antitoxin, RelB/DinJ family
YP_003800245.1	InterPro IPR011067; KEGG: bln:Blon_1607 transcriptional modulator of MazE/toxin, MazF; SPTR: B9CME1  uncharacterized protein; PFAM: PemK-like protein
YP_003800246.1	InterPro IPR007344; KEGG: apv:Apar_0759 protein of unknown function UPF0157; PFAM: protein of unknown function UPF0157; SPTR: C8WAQ0  uncharacterized protein; PFAM: Uncharacterised protein family (UPF0157)
YP_003800247.1	KEGG: sgr:SGR_2632 hypothetical protein; SPTR: B1W2U7  uncharacterized protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003800248.1	COGs: COG5361 conserved hypothetical protein; InterPro IPR010679:IPR010621; KEGG: mhu:Mhun_1063 hypothetical protein; PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; SPTR: C7GAX4  lipoprotein (Fragment); PFAM: Protein of unknown function (DUF1254); Protein of unknown function (DUF1214)
YP_003800249.1	COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: apv:Apar_0280 ABC-3 protein; PFAM: ABC-3 protein; SPTR: B9CMJ2 Manganese transport system membrane protein MntB; PFAM: ABC 3 transport family
YP_003800250.1	COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: apv:Apar_0281 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B9CMJ3 Chelated iron transport system membrane protein YfeB; PFAM: ABC transporter
YP_003800251.1	COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006128:IPR006129:IPR006127; KEGG: apv:Apar_0282 periplasmic solute binding protein; PFAM: periplasmic solute binding protein; SPTR: B9CMJ4 Periplasmic chelated iron-binding protein YfeA; PFAM: Periplasmic solute binding protein family
YP_003800252.1	COGs: COG0588 phosphoglycerate mutase 1; InterPro IPR005952:IPR001345:IPR013078; KEGG: apv:Apar_0426 phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase; PRIAM: Bisphosphoglycerate mutase; SPTR: B9CKZ8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase family; TIGRFAM: phosphoglycerate mutase, BPG-dependent, family 1
YP_003800253.1	COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bth:BT_0221 hypothetical protein; SPTR: C4GC58  uncharacterized protein
YP_003800254.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: ele:Elen_2749 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8WMK2 ABC transporter related; PFAM: ABC transporter
YP_003800255.1	KEGG: ele:Elen_2748 hypothetical protein; SPTR: C8WMK1  uncharacterized protein
YP_003800256.1	COGs: COG1725 transcriptional regulator protein; InterPro IPR000524:IPR011991; KEGG: apv:Apar_0220 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C8W964 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family
YP_003800257.1	COGs: COG4194 membrane protein; InterPro IPR012867; KEGG: apv:Apar_0221 protein of unknown function DUF1648; PFAM: protein of unknown function DUF1648; SPTR: C8W965  uncharacterized protein; PFAM: Protein of unknown function (DUF1648)
YP_003800258.1	COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: shi:Shel_21040 predicted phosphatase, C-terminal domain of histone macro H2A1 like protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; SPTR: C7N880 Predicted phosphatase, C-terminal domain of histone macro H2A1 like protein; PFAM: Macro domain
YP_003800259.1	COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: shi:Shel_21050 hypothetical protein; SPTR: C9LYS2 SIR2 family protein
YP_003800260.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: blo:BL0458 hypothetical protein; PFAM: helix-turn-helix HxlR type; SPTR: A7VYK5  uncharacterized protein; PFAM: HxlR-like helix-turn-helix
YP_003800261.1	InterPro IPR013378; KEGG: swo:Swol_0298 hypothetical protein; PFAM: Listeria/Bacterioides repeat protein; SPTR: A8SJ28  uncharacterized protein; PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); TIGRFAM: LPXTG-motif cell wall anchor domain; Listeria/Bacterioides repeat
YP_003800262.1	InterPro IPR016024; KEGG: apv:Apar_0764 hypothetical protein; SPTR: B9CJV7  uncharacterized protein; PFAM: DNA alkylation repair enzyme
YP_003800263.1	COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: apv:Apar_0682 cobalt transport protein; PFAM: cobalt transport protein; SPTR: A4E7L2  uncharacterized protein; PFAM: Cobalt transport protein
YP_003800264.1	InterPro IPR001917; KEGG: apv:Apar_0680 hypothetical protein; SPTR: A4E7L0  uncharacterized protein
YP_003800265.1	KEGG: cpy:Cphy_0467 hypothetical protein; SPTR: C5ES31  uncharacterized protein
YP_003800266.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR016040:IPR002347:IPR002198; KEGG: ele:Elen_1205 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C7GFJ6 Oxidoreductase, short chain dehydrogenase/reductase family; PFAM: short chain dehydrogenase
YP_003800267.1	KEGG: rpf:Rpic12D_0749 hypothetical protein; SPTR: C6JB88 Predicted protein
YP_003800268.1	COGs: COG2909 ATP-dependent transcriptional regulator protein; InterPro IPR016032:IPR000792:IPR011991; KEGG: cbt:CLH_2973 transcriptional regulator, LuxR family protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: C6LGQ2 Transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
YP_003800269.1	KEGG: ret:RHE_PB00122 sugar ABC transporter, substrate-binding protein; SPTR: B4VMT9 Haemagglutination activity domain protein
YP_003800270.1	KEGG: nph:NP4734A cell surface glycoprotein; SPTR: Q3IN47 Probable cell surface glycoprotein
YP_003800271.1	COGs: COG4260  virion core protein (lumpy skin disease virus); KEGG: lsp:Bsph_3109 hypothetical protein; SPTR: B0NF62  uncharacterized protein; PFAM: SPFH domain / Band 7 family
YP_003800272.1	InterPro IPR008957:IPR003961:IPR003599; KEGG: GE10512 gene product from transcript GE10512-RA; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; Immunoglobulin subtype; SPTR: A4EBA7  uncharacterized protein; PFAM: Fibronectin type III domain
YP_003800273.1	KEGG: ele:Elen_1874 hypothetical protein; SPTR: B1C7P0  uncharacterized protein
YP_003800274.1	COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: shi:Shel_12130 malate dehydrogenase (NAD); PFAM: Malate/L-lactate dehydrogenase; SPTR: C7N5Q6 Malate dehydrogenase (NAD); PFAM: Malate/L-lactate dehydrogenase
YP_003800275.1	COGs: COG3382 conserved hypothetical protein; InterPro IPR020825:IPR005146; KEGG: ccu:Ccur_01730 hypothetical protein; PFAM: B3/4 domain protein; SPTR: C7MLU8 Uncharacterized conserved protein; PFAM: B3/4 domain
YP_003800276.1	KEGG: cac:CAC1450 alpha/beta superfamily hydrolase; SPTR: A7B8Z6  uncharacterized protein
YP_003800277.1	COGs: COG1893 Ketopantoate reductase; InterPro IPR016040:IPR013332; KEGG: bbe:BBR47_39720 hypothetical protein; PFAM: Ketopantoate reductase ApbA/PanE domain protein; SPTR: C4G9F6  uncharacterized protein; PFAM: Ketopantoate reductase PanE/ApbA
YP_003800278.1	COGs: COG2020  protein-S-isoprenylcysteine methyltransferase; KEGG: apv:Apar_0213  protein-S-isoprenylcysteine methyltransferase-like protein; SPTR: B9CN26  uncharacterized protein; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family
YP_003800279.1	COGs: COG0789 transcriptional regulator protein; InterPro IPR009061:IPR000551:IPR012925; KEGG: ele:Elen_2496 transcriptional regulator, MerR family; PFAM: TipAS antibiotic-recognition domain protein; regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C8WL72 Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein; TipAS antibiotic-recognition domain
YP_003800280.1	KEGG: shi:Shel_17510 hypothetical protein; SPTR: A8SJL7  uncharacterized protein; PFAM: Protein of unknown function (DUF2812)
YP_003800281.1	InterPro IPR011991:IPR005149; KEGG: shi:Shel_17520 transcriptional regulator, PadR family; PFAM: transcriptional regulator PadR family protein; SPTR: A8SJL9  uncharacterized protein; PFAM: Transcriptional regulator PadR-like family
YP_003800282.1	KEGG: hwa:HQ1103A hypothetical protein; SPTR: B9CNI4  uncharacterized protein
YP_003800283.1	KEGG: ele:Elen_2509 hypothetical protein; SPTR: C8WLK1  uncharacterized protein
YP_003800284.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593:IPR019825; KEGG: ele:Elen_2508 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8WLK0 ABC transporter related; PFAM: ABC transporter
YP_003800285.1	COGs: COG1725 transcriptional regulator protein; InterPro IPR000524:IPR011991; KEGG: ele:Elen_2507 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C8WLJ9 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family
YP_003800286.1	COGs: COG0428 divalent heavy-metal cations transporter; InterPro IPR003689; KEGG: apv:Apar_0715 zinc/iron permease; PFAM: zinc/iron permease; SPTR: C0EU85  uncharacterized protein; PFAM: ZIP Zinc transporter
YP_003800287.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR016040:IPR008927:IPR013328:IPR006176:IPR 006108; KEGG: msi:Msm_0965 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: A5ULU2 3-hydroxyacyl-CoA dehydrogenase, FadB; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_003800288.1	COGs: COG3759 membrane protein; InterPro IPR009732; KEGG: ssa:SSA_0815 hypothetical protein; PFAM: protein of unknown function DUF1304; SPTR: A3CM41  uncharacterized protein; PFAM: Protein of unknown function (DUF1304)
YP_003800289.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: ccu:Ccur_04330 Fe2+/Zn2+ uptake regulation protein; PFAM: ferric-uptake regulator; SPTR: C2D8Q8 Fur family transcriptional regulator; PFAM: Ferric uptake regulator family
YP_003800290.1	KEGG: fra:Francci3_2438 hypothetical protein; SPTR: Q2JA87  uncharacterized protein
YP_003800291.1	COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006311:IPR006129:IPR006128:IPR006127; KEGG: ccu:Ccur_04310 ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: periplasmic solute binding protein; SPTR: C7MML4 ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: Periplasmic solute binding protein family; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003800292.1	COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: apv:Apar_1057 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8W7P4 ABC transporter related; PFAM: ABC transporter
YP_003800293.1	COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: apv:Apar_1056 ABC-3 protein; PFAM: ABC-3 protein; SPTR: C8W7P3 ABC-3 protein; PFAM: ABC 3 transport family
YP_003800294.1	InterPro IPR008966; KEGG: shi:Shel_12040  collagen-binding protein; SPTR: C7N5P7  collagen-binding protein
YP_003800295.1	COGs: COG4932 outer membrane protein; InterPro IPR008966:IPR019931:IPR008454:IPR019948; KEGG: shi:Shel_12040  collagen-binding protein; PFAM: Cna B domain protein; Gram-positive anchor; SPTR: C7N5P7  collagen-binding protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna protein B-type domain; TIGRFAM: LPXTG-motif cell wall anchor domain
YP_003800296.1	InterPro IPR019931:IPR001899:IPR008454:IPR019948; KEGG: ere:EUBREC_1864 hypothetical protein; PFAM: Cna B domain protein; Gram-positive anchor; SPTR: B1S7B6  uncharacterized protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna protein B-type domain; TIGRFAM: LPXTG-motif cell wall anchor domain
YP_003800297.1	COGs: COG3764 Sortase (surface protein transpeptidase); InterPro IPR005754; KEGG: ssa:SSA_1631 sortase-like protein, PFAM: peptidase C60 sortase A and B; SPTR: A3CPB4 Sortase-like protein, TIGRFAM: sortase family protein; PFAM: Sortase family; TIGRFAM: LPXTG-site transpeptidase (sortase) family protein
YP_003800298.1	InterPro IPR008970; KEGG: bad:BAD_1552 collagen adhesin precursor; SPTR: C0CPW4  uncharacterized protein
YP_003800299.1	COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterProIPR011032:IPR016040:IPR002328:IPR013154:IPR 013149; KEGG: apv:Apar_1228 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: C8W864 Alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_003800300.1	COGs: COG0523  GTPase (G3E family); InterPro IPR003495; KEGG: apv:Apar_1227 cobalamin synthesis protein P47K; PFAM: cobalamin synthesis protein P47K; SPTR: C8W863 Cobalamin synthesis protein P47K; PFAM: CobW/HypB/UreG, nucleotide-binding domain
YP_003800301.1	COGs: COG1882 Pyruvate-formate lyase; InterPro IPR005949:IPR001150:IPR019777:IPR004184; KEGG: ere:EUBREC_0469 hypothetical protein; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; PRIAM: Formate C-acetyltransferase; SPTR: C4GDR0  uncharacterized protein; TIGRFAM: formate acetyltransferase; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: formate acetyltransferase 1
YP_003800302.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR012838:IPR001989:IPR007197; KEGG: lrl:LC705_01439 formate C-acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme); PFAM: Radical SAM domain protein; PRIAM: [Formate-C-acetyltransferase]-activating enzyme; SPTR: A7B375  uncharacterized protein; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM superfamily; TIGRFAM: pyruvate formate-lyase 1-activating enzyme
YP_003800303.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR018490:IPR000595:IPR012318:IPR001808:IPR 014710:IPR011991; KEGG: dhd:Dhaf_1167 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: Q24PT1  uncharacterized protein; PFAM: Cyclic nucleotide-binding domain
YP_003800304.1	InterPro IPR007536; KEGG: shi:Shel_17290 protein of unknown function (DUF548); PFAM: protein of unknown function DUF548; SPTR: B6G8Z9  uncharacterized protein; PFAM: Protein of unknown function (DUF548)
YP_003800305.1	InterPro IPR000620; KEGG: cbe:Cbei_4690 membrane spanning protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: A6M2G8 Membrane spanning protein; PFAM: EamA-like transporter family
YP_003800306.1	KEGG: cbe:Cbei_4689 hypothetical protein; SPTR: C6BX51  uncharacterized protein
YP_003800307.1	COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR000249; KEGG: cbk:CLL_A1450 propanediol utilization protein PduA; PFAM: microcompartments protein; SPTR: B2TJR1 Propanediol utilization protein PduA; PFAM: BMC domain
YP_003800308.1	COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR000249; KEGG: dde:Dde_3284 carbon dioxide concentrating mechanism protein (PduA related)-like; PFAM: microcompartments protein; SPTR: C0D5P4  uncharacterized protein; PFAM: BMC domain
YP_003800309.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR016161:IPR016163; KEGG: aoe:Clos_2399 aldehyde-alcohol dehydrogenase; SPTR: A8MJE9 Aldehyde-alcohol dehydrogenase
YP_003800310.1	COGs: COG1882 Pyruvate-formate lyase; InterPro IPR001150:IPR019777:IPR004184; KEGG: cpy:Cphy_1417 formate C-acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; PRIAM: Formate C-acetyltransferase; SPTR: A9KPD0 Formate C-acetyltransferase; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: pyruvate formate-lyase
YP_003800311.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterProIPR012839:IPR017896:IPR011352:IPR017900:IPR 000169:IPR001989:IPR007197:IPR001450; KEGG: cpy:Cphy_1418 glycyl-radical activating family protein; PFAM: Radical SAM domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: [Formate-C-acetyltransferase]-activating enzyme; SPTR: A9KPD1 Glycyl-radical enzyme activating protein family; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM superfamily; TIGRFAM: glycyl-radical enzyme activating protein family
YP_003800312.1	KEGG: drm:Dred_3274 hypothetical protein; SPTR: A4J9M1  uncharacterized protein
YP_003800313.1	COGs: COG4820 Ethanolamine utilization protein possible chaperonin; InterPro IPR013366:IPR018181; KEGG: aoe:Clos_2393 ethanolamine utilization protein EutJ family protein; SPTR: A8MJE3 Ethanolamine utilization protein EutJ family protein; TIGRFAM: ethanolamine utilization protein EutJ family protein; PFAM: MreB/Mbl protein; TIGRFAM: ethanolamine utilization protein EutJ family protein
YP_003800314.1	KEGG: amt:Amet_3830 microcompartments protein; SPTR: C2CIJ4 Microcompartments protein; PFAM: BMC domain
YP_003800315.1	COGs: COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR004992; KEGG: aoe:Clos_2392 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; SPTR: C7HVW9 Carbon dioxide concentrating mechanism protein CcmL; PFAM: Ethanolamine utilisation protein EutN/carboxysome
YP_003800316.1	COGs: COG4869 Propanediol utilization protein; InterPro IPR008300; KEGG: cpy:Cphy_1429 propanediol utilization protein; PFAM: Propanediol utilization protein; SPTR: C5EE91 Propanediol utilization protein; PFAM: Propanediol utilisation protein PduL
YP_003800317.1	COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR020808:IPR000249; KEGG: cpy:Cphy_2641 microcompartments protein; PFAM: microcompartments protein; SPTR: A9KMZ1 Microcompartments protein; PFAM: BMC domain
YP_003800318.1	COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR020808:IPR000249; KEGG: dsa:Desal_0472 microcompartments protein; PFAM: microcompartments protein; SPTR: C6BX59 Microcompartments protein; PFAM: BMC domain
YP_003800319.1	COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR020808:IPR000249; KEGG: cpy:Cphy_2641 microcompartments protein; PFAM: microcompartments protein; SPTR: C7HVW6 Ribonuclease III; PFAM: BMC domain
YP_003800320.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR013357:IPR016161:IPR016162; KEGG: cbk:CLL_A1465 acetaldehyde dehydrogenase (acetylating); SPTR: C2CIJ9 Aldehyde dehydrogenase (NAD+); TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: Aldehyde dehydrogenase family; TIGRFAM: acetaldehyde dehydrogenase (acetylating)
YP_003800321.1	InterPro IPR011717:IPR019734:IPR011990:IPR013026; KEGG: ter:Tery_3497 peptidase-like; PFAM: Tetratricopeptide TPR_4; SPTR: C7HVW3  uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_003800322.1	KEGG: pca:Pcar_0934 hypothetical protein; SPTR: Q3A620  uncharacterized protein
YP_003800323.1	KEGG: blt:Balat_0427 hypothetical protein; SPTR: B6W8H9  uncharacterized protein
YP_003800324.1	COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR009061:IPR011256; KEGG: cbt:CLH_1370 transcriptional regulatory protein; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C2CIK4 MerR family transcriptional regulator; PFAM: MerR, DNA binding; MerR family regulatory protein; Bacterial transcription activator, effector binding domain
YP_003800325.1	COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR018211:IPR001670; KEGG: cno:NT01CX_0486 alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: C7HVV9 NADPH-dependent butanol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase
YP_003800326.1	COGs: COG4810 Ethanolamine utilization protein; InterPro IPR000249; KEGG: cbe:Cbei_4064 microcompartments protein; PFAM: microcompartments protein; SPTR: A6P0P5  uncharacterized protein; PFAM: BMC domain
YP_003800327.1	COGs: COG4810 Ethanolamine utilization protein; InterPro IPR000249; KEGG: dds:Ddes_1372 microcompartments protein; PFAM: microcompartments protein; SPTR: A7AYD4  uncharacterized protein; PFAM: BMC domain
YP_003800328.1	COGs: COG4917 Ethanolamine utilization protein; InterPro IPR012381; KEGG: ckr:CKR_3021 hypothetical protein; SPTR: C6JCW8  uncharacterized protein; PFAM: Ethanolamine utilisation - propanediol utilisation; TIGRFAM: ethanolamine utilization protein, EutP
YP_003800329.1	COGs: COG1592 Rubrerythrin; InterProIPR004039:IPR003251:IPR009078:IPR012347:IPR 009040; KEGG: eel:EUBELI_00050 ferredoxin hydrogenase; PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; SPTR: B6G909  uncharacterized protein; PFAM: Rubrerythrin
YP_003800330.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: ccu:Ccur_01120 Fe2+/Zn2+ uptake regulation protein; PFAM: ferric-uptake regulator; SPTR: B6GBD9  uncharacterized protein; PFAM: Ferric uptake regulator family
YP_003800331.1	InterPro IPR020084:IPR000086:IPR015797; KEGG: shi:Shel_17300 ADP-ribose pyrophosphatase; PFAM: NUDIX hydrolase; SPTR: C7N764 ADP-ribose pyrophosphatase; PFAM: NUDIX domain
YP_003800332.1	COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR009002:IPR012349; KEGG: cpy:Cphy_1404  flavoredoxin; SPTR: C2HI83 Flavoredoxin; PFAM: Flavin reductase like domain
YP_003800333.1	InterPro IPR000463; KEGG: shi:Shel_02770 ATPase; SPTR: C4F944  uncharacterized protein; PFAM: Archaeal ATPase
YP_003800334.1	InterPro IPR006442; KEGG: lba:Lebu_1222 prevent-host-death family protein; SPTR: C4F8B4  uncharacterized protein; TIGRFAM: prevent-host-death family protein; PFAM: Phd_YefM; TIGRFAM: prevent-host-death family protein
YP_003800336.1	InterPro IPR007167:IPR008988:IPR005302; KEGG: shi:Shel_17730 Fe2+ transport system protein A; PFAM: FeoA family protein; SPTR: C7N7A7 Fe2+ transport system protein A; PFAM: FeoA domain
YP_003800337.1	COGs: COG0370 Fe2+ transport system protein B; InterProIPR002917:IPR011640:IPR011642:IPR006073:IPR 005225; KEGG: shi:Shel_17720 small GTP-binding protein domain protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport B domain protein; nucleoside recognition domain protein; SPTR: C7N7A6 Small GTP-binding protein domain protein; TIGRFAM: small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain
YP_003800338.1	COGs: COG1514 2'-5' RNA ligase; InterPro IPR014051:IPR004175:IPR009097; KEGG: ele:Elen_0760 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; SPTR: C8WMV6 2'-5' RNA ligase; TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase
YP_003800339.1	InterPro IPR000182:IPR016181; KEGG: spp:SPP_0956 acetyltransferase, GNAT family; PFAM: GCN5-related N-acetyltransferase; SPTR: C7H7Q3 Acetyltransferase, GNAT family; PFAM: Acetyltransferase (GNAT) family
YP_003800340.1	COGs: COG1476 transcriptional regulator protein; InterPro IPR001387:IPR010982; KEGG: shi:Shel_23690 predicted transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C7N1T7 Predicted transcriptional regulator; PFAM: Helix-turn-helix
YP_003800341.1	KEGG: dal:Dalk_0129 succinate CoA transferase; SPTR: C4DJL0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
YP_003800342.1	COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR013982; KEGG: shi:Shel_23860 AICAR transformylase/IMP cyclohydrolase PurH; PFAM: AICARFT/IMPCHase bienzyme formylation region; PRIAM: IMP cyclohydrolase; SMART: AICARFT/IMPCHase bienzyme formylation region; SPTR: C7N1V4 AICAR transformylase/IMP cyclohydrolase PurH; PFAM: AICARFT/IMPCHase bienzyme
YP_003800343.1	COGs: COG3363 IMP cyclohydrolase; InterPro IPR020600; KEGG: shi:Shel_23870 IMP cyclohydrolase; PFAM: Inosine monophosphate cyclohydrolase-like; SPTR: C7N1V5 IMP cyclohydrolase; PFAM: IMP cyclohydrolase-like protein; TIGRFAM: IMP cyclohydrolase
YP_003800344.1	InterPro IPR018486:IPR001845:IPR011991; KEGG: bad:BAD_0218 transcription regulator ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C4FGX9  uncharacterized protein; PFAM: Bacterial regulatory protein, arsR family
YP_003800345.1	InterPro IPR013217; KEGG: bcu:BCAH820_2111 hypothetical protein; PFAM: Methyltransferase type 12; SPTR: B7JKR8  uncharacterized protein; PFAM: Methyltransferase domain
YP_003800346.1	COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594:IPR009036:IPR016040; KEGG: plu:plu1515 hypothetical protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: Q7N6N1 Similar to MccB protein of Escherichia coli; PFAM: ThiF family
YP_003800347.1	InterPro IPR011701:IPR016196; KEGG: sgr:SGR_5462 major facilitator superfamily permease; PFAM: major facilitator superfamily MFS_1; SPTR: B1W0N1  permease of the major facilitator superfamily; PFAM: Major Facilitator Superfamily
YP_003800348.1	KEGG: mpt:Mpe_A2605 OM receptor TonB; SPTR: A2SJ20 OM receptor TonB
YP_003800349.1	InterPro IPR007492; KEGG: bad:BAD_1594 two-component response regulator; PFAM: LytTr DNA-binding region; SPTR: C9KA11 Response regulator of the LytR/AlgR family; PFAM: LytTr DNA-binding domain
YP_003800350.1	InterPro IPR001789; KEGG: ere:EUBREC_3120 two-component response regulator; PFAM: response regulator receiver; SPTR: C6L9K0  response regulator receiver domain protein; PFAM: Response regulator receiver domain
YP_003800351.1	KEGG: similar to ankyrin repeat protein, SPTR: B6GDB9  uncharacterized protein
YP_003800352.1	COGs: COG0523  GTPase (G3E family); InterPro IPR003495:IPR011629; KEGG: apv:Apar_0294 cobalamin synthesis protein P47K; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; SPTR: A4E850  uncharacterized protein; PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain
YP_003800353.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871:IPR001140:IPR003439:IPR003593:IPR 011527:IPR017940; KEGG: ele:Elen_1463 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: A4E9V5  uncharacterized protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003800354.1	InterPro IPR007404; KEGG: cac:CAC1083 membrane-associated metal-binding protein; PFAM: membrane-bound metal-dependent hydrolase; SPTR: C8NKS7 Transposase; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457)
YP_003800355.1	COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR000150:IPR013200:IPR006379; KEGG: lhe:lhv_2081 hypothetical protein; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: C0EYZ2  uncharacterized protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB
YP_003800356.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: gwc:GWCH70_2215 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C5D3K9 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003800357.1	COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: ele:Elen_0761 formylmethionine deformylase; PFAM: formylmethionine deformylase; SPTR: B6G869 Peptide deformylase; PFAM: Polypeptide deformylase
YP_003800358.1	COGs: COG0640 transcriptional regulator protein; InterPro IPR001845:IPR011991; KEGG: shi:Shel_05920 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C2D8Y4 Transcriptional repressor; PFAM: Bacterial regulatory protein, arsR family
YP_003800359.1	COGs: COG4905 membrane protein; InterPro IPR010540; KEGG: bad:BAD_0916 hypothetical protein; PFAM: protein of unknown function DUF1113; SPTR: A1A1W4  uncharacterized protein; PFAM: Protein of unknown function (DUF1113)
YP_003800360.1	InterPro IPR006674; KEGG: bad:BAD_0917 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: C0BTT1  uncharacterized protein; PFAM: HD domain
YP_003800361.1	COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200:IPR006379; KEGG: sub:SUB0315 haloacid dehalogenase-like hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: A7VF40  uncharacterized protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB
YP_003800362.1	COGs: COG0538 Isocitrate dehydrogenase; InterPro IPR004790:IPR019818:IPR001804; KEGG: shi:Shel_06080 isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: B0P3Z3  uncharacterized protein; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, eukaryotic type
YP_003800363.1	KEGG: apv:Apar_0288 hypothetical protein; SPTR: C4F9E2  uncharacterized protein
YP_003800364.1	COGs: COG0657 Esterase/lipase; InterPro IPR013094; KEGG: ckr:CKR_2289 hypothetical protein; PFAM: Alpha/beta hydrolase fold-3 domain protein; SPTR: B9E4B5  uncharacterized protein; PFAM: alpha/beta hydrolase fold
YP_003800365.1	COGs: COG0148 Enolase; InterPro IPR000941:IPR020809:IPR020811:IPR020810; KEGG: apv:Apar_0358 enolase; PFAM: Enolase-like; PRIAM: phosphopyruvate hydratase; SPTR: C2D7H3 Enolase; TIGRFAM: enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase
YP_003800366.1	COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; InterPro IPR003358; KEGG: shi:Shel_07010 predicted S-adenosylmethionine-dependent methyltransferase; PFAM:  methyltransferase; SPTR: C7N4C5 Predicted S-adenosylmethionine-dependent methyltransferase; PFAM:  methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase
YP_003800367.1	COGs: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); InterPro IPR002173:IPR011611:IPR017583; KEGG: apv:Apar_1252 1-phosphofructokinase; PFAM: PfkB domain protein; PRIAM: 1-phosphofructokinase; SPTR: B9CLC0 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: 1-phosphofructokinase
YP_003800368.1	COGs: COG1896 hydrolase of HD superfamily; InterPro IPR006674:IPR003607; KEGG: apv:Apar_0292 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; PRIAM: 5'-nucleotidase; SMART: metal-dependent phosphohydrolase HD region; SPTR: B9CMX7 5'-nucleotidase YfbR
YP_003800369.1	COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase; InterPro IPR000644:IPR010766:IPR004097; KEGG: apv:Apar_0296 inorganic diphosphatase; PFAM: DHHA2 domain protein; DRTGG domain protein; CBS domain containing protein; PRIAM: Inorganic diphosphatase; SPTR: C2D723 Possible inorganic diphosphatase; PFAM: DRTGG domain; DHH family; DHHA2 domain; CBS domain
YP_003800370.1	InterPro IPR005829:IPR000620; KEGG: shi:Shel_05230 predicted permease, DMT superfamily; PFAM: protein of unknown function DUF6 transmembrane; SPTR: A4E833  uncharacterized protein; PFAM: EamA-like transporter family
YP_003800371.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: pjd:Pjdr2_3730 transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C3X8Z1 Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_003800372.1	COGs: COG0014 Gamma-glutamyl phosphate reductase; InterProIPR012134:IPR020593:IPR000965:IPR016161:IPR 016162:IPR016163; KEGG: shi:Shel_19350 glutamate-5-semialdehyde dehydrogenase; PRIAM: Glutamate-5-semialdehyde dehydrogenase; SPTR: C7N7R6 Glutamate-5-semialdehyde dehydrogenase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase
YP_003800373.1	COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR020827:IPR006034:IPR006033; KEGG: ele:Elen_0759 L-asparaginase, type I; PFAM: Asparaginase/glutaminase; SPTR: C4FA92  uncharacterized protein; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I
YP_003800374.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR017871:IPR003439:IPR003593; KEGG: apv:Apar_0300 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8W9E3 ABC transporter related; PFAM: ABC transporter
YP_003800375.1	KEGG: shi:Shel_04260  cell wall binding protein; SPTR: A4ED23  uncharacterized protein
YP_003800376.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR001789:IPR000792:IPR011006:IPR016032:IPR 011991; KEGG: shi:Shel_19260 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: B1SBC7  uncharacterized protein; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_003800377.1	KEGG: shi:Shel_09730 hypothetical protein; SPTR: A4ED19  uncharacterized protein
YP_003800378.1	COGs: COG4260  virion core protein (lumpy skin disease virus); InterPro IPR013032; KEGG: ele:Elen_2535 hypothetical protein; SPTR: A4ED21  uncharacterized protein
YP_003800379.1	KEGG: shi:Shel_19280 hypothetical protein; SPTR: A4ED26  uncharacterized protein
YP_003800380.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: shi:Shel_19270 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: C7N7Q8 Histidine kinase
YP_003800381.1	COGs: COG2217 Cation transport ATPase; InterProIPR018303:IPR008250:IPR005834:IPR001757:IPR 000695:IPR006404:IPR006416; KEGG: apv:Apar_0290 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: B9CMX9 Cadmium-translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
YP_003800382.1	COGs: COG3757 Lyzozyme M1 (1 4-beta-N-acetylmuramidase); InterPro IPR002053:IPR017853:IPR013781; KEGG: ccu:Ccur_13500 lysozyme M1 (1,4-beta-N-acetylmuramidase); PFAM: glycoside hydrolase family 25; SPTR: B9CMM6 Lysozyme M1; PFAM: Glycosyl hydrolases family 25
YP_003800383.1	COGs: COG0281 Malic enzyme; InterPro IPR015884:IPR012301:IPR012302:IPR016040; KEGG: cbf:CLI_0318 malic enzyme; PFAM: malic protein NAD-binding; malic protein domain protein; PRIAM: Malate dehydrogenase (oxaloacetate-decarboxylating); SPTR: C0CW49  uncharacterized protein; PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain
YP_003800384.1	COGs: COG0114 Fumarase; InterProIPR020557:IPR000362:IPR018951:IPR003031:IPR 005677:IPR008948; KEGG: eat:EAT1b_0138 fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like; SPTR: C4G2U1  uncharacterized protein; TIGRFAM: fumarate hydratase, class II; PFAM: Lyase; Fumarase C C-terminus; TIGRFAM: fumarate hydratase, class II
YP_003800385.1	KEGG: TEF2; rhodanese-like Ca-sensing receptor; SPTR: Q75T33 Calcium sensing receptor
YP_003800386.1	KEGG: cja:CJA_3351 DNA repair protein RecN; SPTR: C0C6A6  uncharacterized protein
YP_003800387.1	InterPro IPR020175; KEGG: cai:Caci_2358 adenine phosphoribosyltransferase; SPTR: Q8UZH0 BKRF2
YP_003800388.1	COGs: COG4495 conserved hypothetical protein; KEGG: csc:Csac_0796 hypothetical protein; SPTR: A4XHN0  uncharacterized protein
YP_003800389.1	KEGG: similar to Amyloid-like protein 2 precursor (Amyloid protein homolog) (APPH) (CDEI box-binding protein) (CDEBP) ; K08117 amyloid beta (A4) precursor-like protein 2; SPTR: Q4RRD5 Chromosome 16 SCAF15002, whole genome shotgun sequence. (Fragment)
YP_003800390.1	KEGG: ele:Elen_1303 hypothetical protein; SPTR: C8WGN1  uncharacterized protein
YP_003800391.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: fma:FMG_1345 nitroreductase family protein; PFAM: nitroreductase; SPTR: A7VT32  uncharacterized protein; PFAM: Nitroreductase family
YP_003800392.1	InterPro IPR001849; KEGG: eel:EUBELI_00703 hydrogenase nickel incorporation protein HypB; SPTR: B9CL92 Hydrogenase accessory protein HypB
YP_003800393.1	COGs: COG3382 conserved hypothetical protein; InterPro IPR005146:IPR020825; KEGG: shi:Shel_14900 hypothetical protein; PFAM: B3/4 domain protein; SPTR: C7N6H5 Uncharacterized conserved protein; PFAM: B3/4 domain
YP_003800394.1	COGs: COG3467 flavin-nucleotide-binding protein; InterPro IPR011576:IPR009002:IPR012349; KEGG: pdi:BDI_0093 5-nitroimidazole antibiotic resistance protein; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: A6L874 5-nitroimidazole antibiotic resistance protein; PFAM: Pyridoxamine 5'-phosphate oxidase
YP_003800395.1	COGs: COG1956 GAF domain-containing protein; InterPro IPR000614; KEGG: apv:Apar_1203  GAF sensor protein; SPTR: B9CNA2 GAF domain protein; PFAM: GAF domain
YP_003800396.1	COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; InterProIPR004365:IPR004364:IPR002312:IPR004522:IPR 016027:IPR012340:IPR006195; KEGG: apv:Apar_0370 asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: C8W9L3 Asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase
YP_003800397.1	COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR018130:IPR013200; KEGG: apv:Apar_0157 HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: A4E841  uncharacterized protein; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB
YP_003800398.1	COGs: COG3711 Transcriptional antiterminator; InterProIPR013196:IPR002178:IPR016152:IPR011608:IPR 013011; KEGG: sak:SAK_0523 PTS system IIA domain-containing protein; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Helix-turn-helix type 11 domain protein; SPTR: B0MBK6  uncharacterized protein; PFAM: HTH domain; PTS system, Lactose/Cellobiose specific IIB subunit; PRD domain; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_003800399.1	COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178:IPR016152; KEGG:  PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: B0MFQ2  uncharacterized protein; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_003800400.1	InterPro IPR003501:IPR013011; KEGG: sak:SAK_0525 PTS system, galactitol-specific IIB component, PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; SPTR: C2GF97 PTS family galactitol (Gat) porter component IIB; PFAM: PTS system, Lactose/Cellobiose specific IIB subunit
YP_003800401.1	COGs: COG3775 phosphotransferase system galactitol-specific IIC component; InterPro IPR004703:IPR013014; KEGG: PTS system galactitol-specific IIC component; PFAM: PTS system Galactitol-specific IIC component; SPTR: A8R9X7  uncharacterized protein; PFAM: PTS system sugar-specific permease component
YP_003800402.1	COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: cdf:CD2277 sugar phosphate aldolase; PFAM: class II aldolase/adducin family protein; SPTR: B0MFP7  uncharacterized protein; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase
YP_003800403.1	KEGG: bcg:BCG9842_B2176 lysine-specific permease; SPTR: Q3EQM1 Lysine-specific permease
YP_003800404.1	COGs: COG2376 Dihydroxyacetone kinase; InterPro IPR004006; KEGG: oan:Oant_4368 glycerone kinase; PFAM: Dak kinase; PRIAM: Glycerone kinase; SPTR: A8RJ36  uncharacterized protein; PFAM: Dak1 domain
YP_003800405.1	InterPro IPR004007; KEGG: oan:Oant_4367 Dak phosphatase; PFAM: Dak phosphatase; SPTR: B0P8L1  uncharacterized protein; PFAM: DAK2 domain
YP_003800406.1	COGs: COG2376 Dihydroxyacetone kinase; InterPro IPR004006:IPR004007; KEGG: msm:MSMEG_3271 dihydroxyacetone kinase; PFAM: Dak kinase; Dak phosphatase; PRIAM: Glycerone kinase; SPTR: A0QXE4 Dihydroxyacetone kinase; PFAM: DAK2 domain; Dak1 domain
YP_003800407.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: ecc:c4276  regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Q8FCM7  regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003800408.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771:IPR013785; KEGG: elf:LF82_p538 fructose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; PRIAM: Tagatose-bisphosphate aldolase; SPTR: C8TYA4  aldolase; TIGRFAM: ketose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases
YP_003800409.1	COGs: COG3414 phosphotransferase system galactitol-specific IIB component; InterPro IPR003501:IPR013011; KEGG: stm:STM3783  periplasmic protein; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; SPTR: Q8XGY8  IIB component of PTS system; PFAM: PTS system, Lactose/Cellobiose specific IIB subunit
YP_003800410.1	COGs: COG3775 phosphotransferase system galactitol-specific IIC component; InterPro IPR004703:IPR013014; KEGG: eoh:ECO103_4205  phosphotransferase system enzyme IIC; PFAM: PTS system Galactitol-specific IIC component; SPTR: C8TYA1  phosphotransferase system enzyme IIC; PFAM: PTS system sugar-specific permease component
YP_003800411.1	COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: C4C836 Pentulose/hexulose kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain
YP_003800412.1	COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: cth:Cthe_2449 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SPTR: A3DI72 phosphoglycerate mutase; PFAM: phosphoglycerate mutase family
YP_003800413.1	COGs: COG1990 conserved hypothetical protein; InterPro IPR002833; KEGG: apv:Apar_0308 protein of unknown function UPF0099; PFAM: protein of unknown function UPF0099; SPTR: B9CMM9  uncharacterized protein; PFAM: Peptidyl-tRNA hydrolase PTH2; TIGRFAM: conserved hypothetical protein TIGR00283
YP_003800414.1	COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: apv:Apar_1074 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: C8W7R1 Peptidylprolyl isomerase FKBP-type; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_003800415.1	COGs: COG0796 Glutamate racemase; InterPro IPR018187:IPR015942:IPR004391:IPR001920; KEGG: ccu:Ccur_06670 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: C2D8Q0 Glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase
YP_003800416.1	COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: apv:Apar_1121 DegV family protein; PFAM: DegV family protein; SPTR: B9CNX0 DegV family protein; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family
YP_003800417.1	COGs: COG2190 phosphotransferase system IIA components; InterPro IPR001127:IPR011055; KEGG: apv:Apar_0904 PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; SPTR: C8W794 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; TIGRFAM: PTS system, glucose subfamily, IIA component
YP_003800418.1	KEGG: cac:CAC2564 hypothetical protein; SPTR: A4EB16  uncharacterized protein
YP_003800419.1	COGs: COG0822 NifU homolog involved in Fe-S cluster formation; KEGG: cac:CAC2565 NifU-like domain-containing protein; SPTR: A4EB17  uncharacterized protein
YP_003800420.1	COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterProIPR007527:IPR013663:IPR000330:IPR001650:IPR 014001:IPR014021; KEGG: shi:Shel_14860 DNA/RNA helicase, superfamily II, SNF2 family; PFAM: SNF2-related protein; zinc finger SWIM domain protein; SNF2 helicase associated domain protein ; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C7N6H1 DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; Bacterial SNF2 helicase associated; SNF2 family N-terminal domain
YP_003800421.1	InterPro IPR016181; KEGG: lwe:lwe0116 acetyltransferase; SPTR: C2D8Q2  uncharacterized protein; PFAM: Acetyltransferase (GNAT) family
YP_003800422.1	COGs: COG1811 Uncharacterized membrane protein possible Na+ channel or pump; InterPro IPR007563; KEGG: cdl:CDR20291_1891 hypothetical protein; PFAM: protein of unknown function DUF554; SPTR: C2D8Q3 Possible transporter; PFAM: Protein of unknown function (DUF554)
YP_003800423.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR018313:IPR001638:IPR001320:IPR006311; KEGG: apv:Apar_0429 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; SPTR: C8W9S2 Extracellular solute-binding protein family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003800424.1	COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR001497:IPR014048:IPR011991; KEGG: ele:Elen_2401 methylated-DNA/protein-cysteinemethyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: B3JKY7  uncharacterized protein; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase
YP_003800425.1	COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR011343:IPR002915:IPR013785; KEGG: lac:LBA0391 deoxyribose-p aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: C2ER41 Deoxyribose-p aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase
YP_003800426.1	InterPro IPR004704; KEGG: lcb:LCABL_06300 fructose/mannose phosphotransferase system IID component; PFAM: PTS system mannose/fructose/sorbose family IID component; SPTR: B3W828 Fructose/mannose phosphotransferase system IID component; PFAM: PTS system mannose/fructose/sorbose family IID component
YP_003800427.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: lcb:LCABL_06350 transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: B6FZF4  uncharacterized protein; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003800428.1	KEGG: pag:PLES_54621  chemotaxis transducer; SPTR: Q9HUB1 Probable chemotaxis transducer
YP_003800429.1	InterPro IPR001647:IPR009057; KEGG: apv:Apar_0148  transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: C8W8Z6  transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003800430.1	COGs: COG3581 conserved hypothetical protein; InterPro IPR002731:IPR018709:IPR008275; KEGG: apv:Apar_0149 CoA-substrate-specific enzyme activase; PFAM: Protein of unknown function DUF2229, CoA enzyme activase; ATPase BadF/BadG/BcrA/BcrD type; SPTR: C8W8Z7 CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; BadF/BadG/BcrA/BcrD ATPase family; CoA enzyme activase uncharacterised domain (DUF2229); TIGRFAM: CoA-substrate-specific enzyme activase
YP_003800431.1	COGs: COG0344 membrane protein; InterPro IPR003811; KEGG: lga:LGAS_0175 hypothetical protein; PFAM: protein of unknown function DUF205; SPTR: C6LA65  membrane protein; PFAM: Domain of unknown function (DUF205); TIGRFAM: conserved hypothetical integral membrane protein TIGR00023
YP_003800432.1	COGs: COG2195 Di- and tripeptidase; InterPro IPR001261:IPR002933:IPR011650:IPR010161; KEGG: apv:Apar_0155 peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20; PRIAM: Tripeptide aminopeptidase; SPTR: C8W903 Peptidase T; TIGRFAM: peptidase T; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T
YP_003800433.1	KEGG: apv:Apar_0156 hypothetical protein; SPTR: B9CM53  uncharacterized protein
YP_003800434.1	COGs: COG1621 Beta-fructosidase (levanase/invertase); InterPro IPR013148:IPR013189:IPR001362:IPR008985; KEGG: bhy:BHWA1_00077 beta-fructosidase (levanase/invertase); PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; SPTR: B9CM48 Sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolases family 32 C terminal; Glycosyl hydrolases family 32 N-terminal domain
YP_003800435.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611; KEGG: ere:EUBREC_1413 PfkB-type carbohydrate kinase family protein; PFAM: PfkB domain protein; SPTR: B9CM49 Fructokinase; PFAM: pfkB family carbohydrate kinase
YP_003800436.1	COGs: COG1263 phosphotransferase system IIC components glucose/maltose/N-acetylglucosamine-specific; InterProIPR018114:IPR001127:IPR018113:IPR003352:IPR 011535:IPR011055:IPR001996:IPR013013; KEGG: stc:str1734 sucrose-specific PTS permease, enzyme II; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; phosphotransferase system EIIB/cysteine, phosphorylation site; SPTR: B9CM50 Pts system beta-glucoside-specific eiibca component; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system, EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; phosphotransferase system, EIIB; TIGRFAM: PTS system, glucose-like IIB component; PTS system, glucose subfamily, IIA component
YP_003800437.1	COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761:IPR010982; KEGG: transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; SPTR: B9CM51 Transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family
YP_003800438.1	COGs: COG1621 Beta-fructosidase (levanase/invertase); InterProIPR018053:IPR013148:IPR013189:IPR001362:IPR 006232:IPR008985; KEGG: bhy:BHWA1_00077 beta-fructosidase (levanase/invertase); PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; SPTR: A6BIX3  uncharacterized protein; TIGRFAM: sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolases family 32 N-terminal domain; TIGRFAM: sucrose-6-phosphate hydrolase
YP_003800439.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: lbu:LBUL_1218 permease; PFAM: protein of unknown function UPF0118; SPTR: C4GD97  uncharacterized protein; PFAM: Domain of unknown function DUF20
YP_003800440.1	KEGG: shi:Shel_18970 hypothetical protein; SPTR: C7N7M8  uncharacterized protein
YP_003800441.1	KEGG: shi:Shel_18980 hypothetical protein; SPTR: C7N7M9  uncharacterized protein
YP_003800442.1	InterPro IPR018201; KEGG: shi:Shel_18990  collagen-binding protein; SPTR: C7N7N0  collagen-binding protein
YP_003800443.1	KEGG: cyn:Cyan7425_1532 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; SPTR: B8HPP1 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
YP_003800444.1	KEGG: rca:Rcas_4101 hypothetical protein; SPTR: C7G879  uncharacterized protein
YP_003800445.1	KEGG: sen:SACE_6654 hypothetical protein; SPTR: Q8GFF2  uncharacterized protein
YP_003800446.1	KEGG: hypothetical protein; SPTR: B0N9R7  uncharacterized protein
YP_003800447.1	KEGG: dystonin, GAS (Growth-arrest-specific protein), and related proteins; SPTR: C7V051 Predicted protein
YP_003800448.1	KEGG: cph:Cpha266_1614 restriction endonuclease; SPTR: A1BGV8 Restriction endonuclease
YP_003800449.1	KEGG: shi:Shel_14070 hypothetical protein; SPTR: C7N693  uncharacterized protein
YP_003800450.1	KEGG: shi:Shel_14070 hypothetical protein; SPTR: C7N693  uncharacterized protein
YP_003800451.1	InterPro IPR002611; KEGG: car:cauri_2515  transposase; PFAM: IstB domain protein ATP-binding protein; SPTR: C0XQV6 AAA-superfamily ATP binding protein; PFAM: IstB-like ATP binding protein
YP_003800452.1	InterPro IPR018873; KEGG: wsu:WS1135 hypothetical protein; PFAM: KilA-N, DNA-binding domain; SPTR: A4EBM9  uncharacterized protein; PFAM: ORF6N domain
YP_003800453.1	InterPro IPR014942; KEGG: ccu:Ccur_11430 protein of unknown function (DUF1814); PFAM: Domain of unknown function DUF1814; SPTR: C7MPJ2  uncharacterized protein; PFAM: Domain of unknown function (DUF1814)
YP_003800454.1	COGs: COG5340 transcriptional regulator protein; KEGG: ccu:Ccur_11420 hypothetical protein; SPTR: C7MPJ1  uncharacterized protein
YP_003800455.1	KEGG: fsu:Fisuc_0876 KilA-N, DNA-binding domain protein; SPTR: A4EBM9  uncharacterized protein
YP_003800456.1	KEGG: wsu:WS1135 hypothetical protein; SPTR: C2FRT3  uncharacterized protein; PFAM: ORF6N domain
YP_003800457.1	KEGG: pgi:PG0079 abortive infection protein, SPTR: Q4CB70 Abortive infection protein
YP_003800458.1	KEGG: aba:Acid345_2063 hypothetical protein; SPTR: Q1IPY6  uncharacterized protein
YP_003800459.1	KEGG: car:cauri_0898 hypothetical protein; SPTR: C3PF91  uncharacterized protein
YP_003800460.1	COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: dhd:Dhaf_1999 transglutaminase domain protein; PFAM: transglutaminase domain protein; SPTR: C8PTZ8 Transglutaminase domain protein; PFAM: Transglutaminase-like superfamily
YP_003800461.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: dge:Dgeo_2509 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: A4EBY3  uncharacterized protein; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003800462.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: nml:Namu_0953 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C4F9G1  uncharacterized protein; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003800463.1	COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; InterPro IPR001347; KEGG: lmo:lmo0035 hypothetical protein; PFAM: sugar isomerase (SIS); SPTR: C4F9G5  uncharacterized protein; PFAM: SIS domain
YP_003800464.1	KEGG: yen:YE3122  multidrug transporter membrane\ATP-binding components; SPTR: B9CN13  uncharacterized protein
YP_003800465.1	COGs: COG2222 phosphosugar isomerase; KEGG: sec:SC4392  glucosamine-fructose-6-phosphate aminotransferase; SPTR: C4F9F1  uncharacterized protein; PFAM: SIS domain
YP_003800466.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR013022; KEGG: smd:Smed_5464 xylose isomerase domain-containing protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: A4EBY9  uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel
YP_003800467.1	COGs: COG2893 phosphotransferase system mannose/fructose-specific component IIA; InterPro IPR004701; KEGG: PTS system fructose subfamily IIA component; PFAM: PTS system fructose subfamily IIA component; SPTR: C4F9F0  uncharacterized protein; PFAM: PTS system fructose IIA component
YP_003800468.1	COGs: COG3444 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIB; InterPro IPR004720; KEGG: PTS system sorbose subfamily IIB component; PFAM: PTS system sorbose subfamily IIB component; SPTR: B9CN07 PTS system, IIB component; PFAM: PTS system sorbose subfamily IIB component
YP_003800469.1	COGs: COG3715 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIC; InterPro IPR004700; KEGG: kpn:KPN_04804  PTS permease; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; SPTR: C4F9F3  uncharacterized protein; PFAM: PTS system sorbose-specific iic component
YP_003800470.1	COGs: COG3716 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IID; InterPro IPR004704; KEGG: PTS system mannose/fructose/sorbose family IID component; PFAM: PTS system mannose/fructose/sorbose family IID component; SPTR: C4F9F2  uncharacterized protein; PFAM: PTS system mannose/fructose/sorbose family IID component
YP_003800471.1	InterPro IPR003343:IPR008964; KEGG: dae:Dtox_1961 Ig domain protein group 2 domain protein; PFAM: Ig domain protein group 2 domain protein; SPTR: C0EHK7  uncharacterized protein; PFAM: Bacterial Ig-like domain (group 2)
YP_003800472.1	KEGG: shi:Shel_02720 hypothetical protein; SPTR: C7N234  uncharacterized protein
YP_003800473.1	InterPro IPR014942; KEGG: shi:Shel_02710 protein of unknown function (DUF1814); PFAM: Domain of unknown function DUF1814; SPTR: C7N233  uncharacterized protein; PFAM: Domain of unknown function (DUF1814)
YP_003800475.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR018062:IPR000005:IPR018060:IPR009057:IPR 012287; KEGG: ele:Elen_1482 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C8WH60 Transcriptional regulator, AraC family
YP_003800476.1	COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: ele:Elen_1483 cobalt transport protein; PFAM: cobalt transport protein; SPTR: C8WH59 Cobalt transport protein; PFAM: Cobalt transport protein
YP_003800477.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR003593; KEGG: ele:Elen_1484 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8WH61 ABC transporter related; PFAM: ABC transporter
YP_003800478.1	InterPro IPR011733; KEGG: ele:Elen_1485 hypothetical protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein; SPTR: C8WH62  uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185
YP_003800479.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871:IPR001140:IPR003439:IPR003593:IPR 011527:IPR017940; KEGG: ele:Elen_1486 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C8WH63 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003800480.1	KEGG: GE18366 gene product from transcript GE18366-RA; SPTR: B4NZM3 Protein Wnt
YP_003800481.1	COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: cbe:Cbei_0973 RpiR family transcriptional regulator; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: B7CB00  uncharacterized protein; PFAM: Helix-turn-helix domain, rpiR family; SIS domain
YP_003800482.1	COGs: COG1264 phosphotransferase system IIB components; InterPro IPR018113:IPR001996; KEGG: bpu:BPUM_0209 PTS family glucose/glucoside (glc) porter component IIBCA; PFAM: phosphotransferase system EIIB/cysteine, phosphorylation site; SPTR: B7CB01  uncharacterized protein; PFAM: phosphotransferase system, EIIB
YP_003800483.1	COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterProIPR001155:IPR013027:IPR001327:IPR000103:IPR 013785:IPR016040; KEGG: cdl:CDR20291_2962 predicted enoate reductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: B7CB02  uncharacterized protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH:flavin oxidoreductase / NADH oxidase family
YP_003800484.1	COGs: COG0474 Cation transport ATPase; InterProIPR018303:IPR004014:IPR008250:IPR005834:IPR 006068:IPR001757:IPR000695; KEGG: apv:Apar_1038 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: C8W7M6 ATPase, P-type (Transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; haloacid dehalogenase-like hydrolase; Cation transporter/ATPase, N-terminus; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; potassium and/or sodium efflux P-type ATPase, fungal-type
YP_003800485.1	COGs: COG0058 Glucan phosphorylase; InterPro IPR000811:IPR011833; KEGG: ere:EUBREC_2426 glycosyltransferase family 35 candidate glycogen phosphorylase; PFAM: glycosyl transferase family 35; PRIAM: phosphorylase; SPTR: A8S9Z7 phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: Carbohydrate phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases
YP_003800486.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR018062:IPR003313:IPR000005:IPR018060:IPR 020449:IPR009057:IPR014710:IPR012287; KEGG: ere:EUBREC_2427 L-rhamnose operon transcriptional activator; PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C7HA47  AraC-type DNA-binding domain-containing protein; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family
YP_003800487.1	COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: bln:Blon_1704 conserved hypothetical protein 730; PFAM: conserved hypothetical protein; SPTR: B9AUS0  uncharacterized protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2
YP_003800488.1	COGs: COG0205 6-phosphofructokinase; InterPro IPR011404:IPR000023; KEGG: cpy:Cphy_3345 phosphofructokinase; PFAM: phosphofructokinase; SPTR: A8S7T0  uncharacterized protein; PFAM: phosphofructokinase
YP_003800489.1	COGs: COG1101 ABC-type uncharacterized transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: ere:EUBREC_0186 ABC-type uncharacterized transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C4F9X8  uncharacterized protein; PFAM: ABC transporter
YP_003800490.1	COGs: COG4120 ABC-type uncharacterized transport system permease component; InterPro IPR017441:IPR001851; KEGG: bhy:BHWA1_00397 hypothetical protein; PFAM: inner-membrane translocator; SPTR: B6GB53  uncharacterized protein; PFAM: Branched-chain amino acid transport system / permease component
YP_003800491.1	COGs: COG2984 ABC-type uncharacterized transport system periplasmic component; InterPro IPR007487; KEGG: bhy:BHWA1_00396 ABC-type uncharacterized transport system, periplasmic component; PFAM: protein of unknown function DUF534; SPTR: C0D980  uncharacterized protein; PFAM: ABC transporter substrate binding protein
YP_003800492.1	COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase family; InterPro IPR018211:IPR001670; KEGG: ere:EUBREC_3047 NADH-dependent butanol dehydrogenase A (BDH I); PFAM: iron-containing alcohol dehydrogenase; SPTR: C4Z8E8 NADH-dependent butanol dehydrogenase A (BDH I); PFAM: Iron-containing alcohol dehydrogenase
YP_003800493.1	InterPro IPR011335; KEGG: ele:Elen_1303 hypothetical protein; SPTR: C8WGN1  uncharacterized protein
YP_003800494.1	COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR011895:IPR017900:IPR002880:IPR019752:IPR 019456:IPR001450:IPR002869:IPR009014:IPR015941:IPR017896; KEGG: apv:Apar_1328 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B6GD95  uncharacterized protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
YP_003800495.1	COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; KEGG: dhd:Dhaf_2612 hypothetical protein; SPTR: A4EAG0  uncharacterized protein; PFAM: NMT1/THI5 like
YP_003800496.1	COGs: COG3973 Superfamily I DNA and RNA helicase; InterPro IPR014016; KEGG: apv:Apar_0360 superfamily I DNA and RNA helicase-like protein; SPTR: B9CP84 Superfamily I DNA and RNA helicase; PFAM: UvrD/REP helicase
YP_003800497.1	COGs: COG0218 GTPase; InterPro IPR002917:IPR019987; KEGG: apv:Apar_0361 small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: B9CP83 Ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: Ferrous iron transport protein B; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain
YP_003800498.1	COGs: COG4581 Superfamily II RNA helicase; InterProIPR000209:IPR011545:IPR001650:IPR014001:IPR 014021; KEGG: ele:Elen_1453 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C8WH31 DEAD/DEAH box helicase domain protein; PFAM: Domain of unknown function (DUF3516); Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_003800499.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: ele:Elen_0408 transcriptional regulator, MarR family; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C8WKU1 Transcriptional regulator, MarR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_003800501.1	InterPro IPR001387:IPR010982; KEGG: amr:AM1_A0344 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: A8ZKZ4  uncharacterized protein; PFAM: Helix-turn-helix
YP_003800502.1	COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: shi:Shel_17220 predicted membrane protein involved in D-alanine export; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: C7N756 Predicted membrane protein involved in D-alanine export; PFAM: MBOAT family
YP_003800503.1	InterPro IPR013830; KEGG: shi:Shel_17210 Y_Y_Y domain-containing protein; SPTR: C2D866  uncharacterized protein
YP_003800504.1	COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein; InterPro IPR020845:IPR000873:IPR010071; KEGG: shi:Shel_17200 non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; SPTR: C2D865 Long-chain-fatty-acid--CoA ligase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-binding enzyme; TIGRFAM: amino acid adenylation domain
YP_003800505.1	COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR009006; KEGG: shi:Shel_17190 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: C2D864 Possible diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YP_003800506.1	InterPro IPR009081; KEGG: shi:Shel_17180 hypothetical protein; SPTR: C2D863 Acyl carrier protein
YP_003800507.1	COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterProIPR000277:IPR006235:IPR015424:IPR015421:IPR 015422; KEGG: ele:Elen_0295 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; PRIAM: O-acetylhomoserine aminocarboxypropyltransferase; SPTR: C4F806  uncharacterized protein; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase
YP_003800508.1	KEGG: hypothetical protein; SPTR: Q650X8  uncharacterized protein OSJNBa0042B15.25
YP_003800509.1	COGs: COG2827 endonuclease containing a URI domain; InterPro IPR000305; KEGG: ccu:Ccur_13970 predicted endonuclease containing a URI domain protein; PFAM: Excinuclease ABC C subunit domain protein; SPTR: C7MLC3 Predicted endonuclease containing a URI domain protein; PFAM: GIY-YIG catalytic domain
YP_003800510.1	COGs: COG4487 conserved hypothetical protein; InterPro IPR019219; KEGG: ele:Elen_1799 hypothetical protein; PFAM: Protein of unknown function DUF2130; SPTR: C8WI23  uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2130)
YP_003800511.1	KEGG: shi:Shel_12980 hypothetical protein; SPTR: C7N5Z0  uncharacterized protein
YP_003800512.1	COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: ccu:Ccur_03300 serine/threonine protein kinase; PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; SPTR: C2D861  uncharacterized protein; PFAM: PASTA domain
YP_003800513.1	COGs: COG0554 Glycerol kinase; InterPro IPR018483:IPR018484:IPR018485:IPR005999; KEGG: shi:Shel_21570 glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: B9CMN1 Glycerol kinase; TIGRFAM: glycerol kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase
YP_003800514.1	COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: ele:Elen_1032 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: C8WPB6 Alpha/beta hydrolase fold protein; PFAM:  lysophospholipase
YP_003800515.1	COGs: COG0655 Multimeric flavodoxin WrbA; KEGG: bhy:BHWA1_02501 multimeric flavodoxin WrbA fused to cytochrome c-like domain; SPTR: C1QEI5 Multimeric flavodoxin WrbA; PFAM: NADPH-dependent FMN reductase
YP_003800516.1	COGs: COG2508 Regulator of polyketide synthase expression; KEGG: nth:Nther_1023  transcriptional regulator, PucR family; SPTR: C5EG39 Predicted protein
YP_003800517.1	InterPro IPR009057:IPR001647; KEGG: bld:BLi02242 hypothetical protein; SPTR: B5CQX1  uncharacterized protein
YP_003800518.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155:IPR016039:IPR016038; KEGG: mka:MK1378 acetyl-CoA acetyltransferase; SPTR: C5EG38 Acetyl-CoA acetyltransferase; PFAM: Beta-ketoacyl synthase, N-terminal domain
YP_003800519.1	COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: afu:AF0284 hypothetical protein; PFAM: protein of unknown function DUF35; SPTR: C5EG37 Predicted protein; PFAM: DUF35 OB-fold domain
YP_003800520.1	InterPro IPR006163:IPR009081; KEGG: hmo:HM1_2166 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: C5EG36 Predicted protein; PFAM: phosphopantetheine attachment site
YP_003800521.1	COGs: COG0280 phosphotransacetylase; InterPro IPR012147:IPR002505; KEGG: shi:Shel_11220 phosphotransacetylase; PFAM: phosphate acetyl/butaryl transferase; PRIAM: phosphate acetyltransferase; SPTR: C5EG35 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase
YP_003800522.1	COGs: COG3426 Butyrate kinase; InterPro IPR011245:IPR000890; KEGG: gyc:GYMC61_0263 butyrate kinase; PFAM: acetate and butyrate kinase; SPTR: C7IBL9 Butyrate kinase; TIGRFAM: butyrate kinase; PFAM: Acetokinase family; TIGRFAM: butyrate kinase
YP_003800523.1	InterPro IPR011701:IPR016196; KEGG: dhd:Dhaf_1899 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C0CN25  uncharacterized protein; PFAM: Major Facilitator Superfamily
YP_003800524.1	KEGG: apv:Apar_0311 hypothetical protein; SPTR: B9CMN4  uncharacterized protein
YP_003800525.1	COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR019823:IPR001185; KEGG: apv:Apar_0316 large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; SPTR: C8W9F9 Large conductance mechanosensitive channel protein; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein
YP_003800526.1	COGs: COG1490 D-Tyr-tRNAtyr deacylase; InterPro IPR003732; KEGG: ele:Elen_2503 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: C1XND8 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase
YP_003800527.1	COGs: COG2317 Zn-dependent carboxypeptidase; InterPro IPR001333; KEGG: apv:Apar_0317 carboxypeptidase Taq; PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; PRIAM: Carboxypeptidase Taq; SPTR: B9CMP1 Carboxypeptidase Taq; PFAM: Carboxypeptidase Taq (M32) metallopeptidase
YP_003800528.1	COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: apv:Apar_0320 ROK family protein; PFAM: ROK family protein; SPTR: B9CMP4 Glucokinase, ROK family; PFAM: ROK family; TIGRFAM: ROK family protein ( glucokinase)
YP_003800529.1	COGs: COG1299 phosphotransferase system fructose-specific IIC component; InterProIPR003353:IPR003352:IPR006327:IPR013011:IPR 013014; KEGG: apv:Apar_0321 PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system PTS fructose-specific IIB subunit; phosphotransferase system EIIC; SPTR: C8W9G4 PTS system, fructose subfamily, IIC subunit; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; PFAM: PTS system, Lactose/Cellobiose specific IIB subunit; TIGRFAM: PTS system, fructose-specific, IIB component; PTS system, fructose subfamily, IIC component
YP_003800530.1	COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178:IPR004715:IPR016152; KEGG: apv:Apar_1119  PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: C2D855  uncharacterized protein; TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; TIGRFAM: PTS system, fructose subfamily, IIA component (TC 4.A.2.1.8)
YP_003800531.1	COGs: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); InterPro IPR011611:IPR017583; KEGG: apv:Apar_0322 1-phosphofructokinase; PFAM: PfkB domain protein; SPTR: C8W9G5 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: 1-phosphofructokinase
YP_003800532.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771:IPR013785; KEGG: apv:Apar_1070 ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; PRIAM: Tagatose-bisphosphate aldolase; SPTR: C8W7Q7 Ketose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases
YP_003800533.1	COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: msm:MSMEG_1377 DeoR-family protein transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: A4E904  uncharacterized protein; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain
YP_003800534.1	COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR006680:IPR003764:IPR011059; KEGG: apv:Apar_1061 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: C2D6Y2 Possible N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase
YP_003800535.1	COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200:IPR006379; KEGG: apv:Apar_0157 HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: C2D6Y3 Possible HAD hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB
YP_003800536.1	COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: aeh:Mlg_2653 diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: Q0A594 Diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003800537.1	COGs: COG4932 outer membrane protein; InterProIPR008456:IPR008454:IPR019948:IPR019931:IPR 008970:IPR008966:IPR011252; KEGG: ccu:Ccur_13730  collagen-binding protein; PFAM: Cna B domain protein; Collagen binding domain protein; Gram-positive anchor; SPTR: C7MLA1  collagen-binding protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna protein B-type domain; Collagen binding domain; TIGRFAM: LPXTG-motif cell wall anchor domain
YP_003800538.1	KEGG: ele:Elen_1602 hypothetical protein; SPTR: C8WHH9  uncharacterized protein
YP_003800539.1	COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; InterProIPR004188:IPR002319:IPR004529:IPR010978:IPR 006195; KEGG: apv:Apar_1055 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; PRIAM: Phenylalanine--tRNA ligase; SPTR: C8W7P2 Phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit
YP_003800540.1	COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterProIPR002547:IPR005146:IPR005147:IPR005121:IPR 004532:IPR020825:IPR016027:IPR009061:IPR012340; KEGG: apv:Apar_1054 phenylalanyl-tRNA synthetase, beta subunit; PFAM: B3/4 domain protein; t-RNA-binding domain protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; SPTR: C8W7P1 Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial
YP_003800541.1	KEGG: apv:Apar_1053 hypothetical protein; SPTR: C2D6Y6  uncharacterized protein
YP_003800542.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: eoh:ECO103_4202  GntR family regulatory protein; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C2D6Y7 GntR family transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003800543.1	COGs: COG0366 Glycosidase; InterProIPR005829:IPR006047:IPR006589:IPR017853:IPR 013781; KEGG: ere:EUBREC_1014 cyclomaltodextrinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: C7G758 Cyclomaltodextrinase; PFAM: Alpha amylase, catalytic domain
YP_003800544.1	COGs: COG0469 Pyruvate kinase; InterProIPR015793:IPR015794:IPR001697:IPR015813:IPR 015795:IPR011037; KEGG: apv:Apar_1040 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PRIAM: Pyruvate kinase; SPTR: C2D6Y8 Pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase
YP_003800545.1	COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006140:IPR006139:IPR016040; KEGG: apv:Apar_1039 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: B9CMV8 D-lactate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_003800546.1	COGs: COG1162 GTPase; InterPro IPR004881:IPR010914; KEGG: apv:Apar_1037 GTPase EngC; PFAM: GTPase EngC; SPTR: C8W7M5 GTPase EngC; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A
YP_003800547.1	InterPro IPR013974; KEGG: apv:Apar_1036 SAF domain protein; PFAM: SAF domain protein; SPTR: B9CMV0 SAF domain protein; PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB
YP_003800548.1	KEGG: apv:Apar_1035 ATPase-like protein involved in chromosome partitioning; SPTR: B9CMU9  uncharacterized protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003800549.1	COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR017975:IPR001482; KEGG: apv:Apar_1034 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: C2D730 Type II secretion system protein E; PFAM: Type II/IV secretion system protein
YP_003800550.1	COGs: COG4965 Flp pilus assembly protein TadB; InterPro IPR018076; KEGG: apv:Apar_1033 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: B9CMU7 Bacterial type II secretion system protein F domain protein; PFAM: Bacterial type II secretion system protein F domain
YP_003800551.1	InterPro IPR018076; KEGG: apv:Apar_1032 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: C8W7M0 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain
YP_003800552.1	InterPro IPR007166; KEGG: ccu:Ccur_13130 class III signal peptide-containing protein; PFAM: Protein of unknown function DUF361; SPTR: A4E9Q1  uncharacterized protein; PFAM: Class III signal peptide
YP_003800553.1	KEGG: apv:Apar_1030 hypothetical protein; SPTR: C8W7L8  uncharacterized protein
YP_003800554.1	KEGG: apv:Apar_1028 TadE family protein; SPTR: C2D736  uncharacterized protein
YP_003800555.1	KEGG: apv:Apar_1027 hypothetical protein; SPTR: C2D737  uncharacterized protein
YP_003800556.1	KEGG: apv:Apar_1026 hypothetical protein; SPTR: C2D739  uncharacterized protein
YP_003800557.1	InterPro IPR003795; KEGG: ccu:Ccur_13070 hypothetical protein; PFAM: protein of unknown function DUF192; SPTR: A1HPS0  uncharacterized protein; PFAM: Uncharacterized ACR, COG1430
YP_003800558.1	InterPro IPR000253:IPR008984; KEGG: mta:Moth_0908 FHA domain-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: C2D741  uncharacterized protein; PFAM: FHA domain
YP_003800559.1	COGs: COG1528 Ferritin-like protein; InterPro IPR008331:IPR009078:IPR012347:IPR009040; KEGG: apv:Apar_0301 ferritin Dps family protein; PFAM: Ferritin Dps family protein; SPTR: B9CMW9 Ferritin; PFAM: Ferritin-like domain
YP_003800560.1	COGs: COG4907 membrane protein; InterPro IPR018702; KEGG: apv:Apar_1023 membrane protein-like protein; PFAM: Protein of unknown function DUF2207, membrane; SPTR: C8W7L2 Membrane protein-like protein; PFAM: Predicted membrane protein (DUF2207)
YP_003800562.1	SPTR: C1YWC7 ATPase component of various ABC-type transport systems with duplicated ATPase domain
YP_003800563.1	KEGG: lsl:LSL_1648 phage integrase; SPTR: B0MKZ2  uncharacterized protein
YP_003800564.1	COGs: COG1254 Acylphosphatase; InterPro IPR017968:IPR001792:IPR020456; KEGG: ere:EUBREC_0200  acylphosphatase; PFAM: acylphosphatase; SPTR: B9CLX9 Acylphosphatase; PFAM: Acylphosphatase
YP_003800565.1	COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: ccu:Ccur_09150 hypothetical protein; PFAM: DegV family protein; SPTR: C7MNX3 Uncharacterized conserved protein; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family
YP_003800566.1	KEGG: apv:Apar_1018 hypothetical protein; SPTR: C8W7K7  uncharacterized protein; PFAM: CarD-like/TRCF domain
YP_003800567.1	COGs: COG3830 ACT domain-containing protein; InterPro IPR002912; KEGG: mta:Moth_1378 hypothetical protein; PFAM: amino acid-binding ACT domain protein; SPTR: Q2RIP8 ACT domain-with protein; PFAM: ACT domain
YP_003800568.1	COGs: COG0372 Citrate synthase; InterPro IPR002020:IPR016141:IPR016142; KEGG: shi:Shel_28210 citrate synthase; PFAM: Citrate synthase; PRIAM: Citrate (Si)-synthase; SPTR: B6G9F5  uncharacterized protein; PFAM: Citrate synthase
YP_003800569.1	COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200:IPR006379; KEGG: apv:Apar_1016 HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: C8W7K5 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB
YP_003800570.1	COGs: COG3158 K+ transporter; InterPro IPR003855; KEGG: apv:Apar_1015 K potassium transporter; PFAM: K potassium transporter; SPTR: C2D7D6 KUP family potassium (K+) uptake permease; PFAM: K+ potassium transporter
YP_003800571.1	COGs: COG2939 Carboxypeptidase C (cathepsin A); InterPro IPR001563; KEGG: blt:Balat_0443 carboxypeptidase C; PFAM: peptidase S10 serine carboxypeptidase; SPTR: C2D7D7 Carboxypeptidase C; PFAM: Serine carboxypeptidase
YP_003800572.1	KEGG: ele:Elen_0434 hypothetical protein; SPTR: C8WL91  uncharacterized protein
YP_003800573.1	COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR017244:IPR004114:IPR000241; KEGG: apv:Apar_1014 THUMP domain protein; PFAM: THUMP domain protein; RNA methylase; SPTR: C8W7K3 THUMP domain protein; PFAM: S-adenosylmethionine-dependent methyltransferase; THUMP domain
YP_003800574.1	COGs: COG1109 phosphomannomutase; InterPro IPR016066:IPR005844:IPR005845:IPR016055; KEGG: apv:Apar_1013 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; SPTR: B9CL65 phosphoglucomutase/phosphomannomutase family protein; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_003800575.1	KEGG: apv:Apar_1012 hypothetical protein; SPTR: C8W7K1  uncharacterized protein
YP_003800576.1	COGs: COG1438 Arginine repressor; InterPro IPR001669:IPR011991; KEGG: apv:Apar_1011 arginine repressor, ArgR; PFAM: arginine repressor; SPTR: C2D7E2 Possible arginine repressor; PFAM: Arginine repressor, C-terminal domain; Arginine repressor, DNA binding domain; TIGRFAM: arginine repressor
YP_003800577.1	COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264:IPR001460:IPR011816:IPR012338; KEGG: apv:Apar_1010 penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SPTR: C2D7E6 Possible penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family
YP_003800578.1	COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: apv:Apar_0036 acyltransferase 3; PFAM: acyltransferase 3; SPTR: B9CLV5 Sugar acetylase; PFAM: Acyltransferase family
YP_003800579.1	InterPro IPR001173; KEGG: apv:Apar_1001 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C8W7J0 Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003800580.1	COGs: COG3475 LPS biosynthesis protein; InterPro IPR007074; KEGG: ele:Elen_2033 LicD family protein; PFAM: LicD family protein; SPTR: C2D6K3 Possible lipopolysaccharide cholinephosphotransferase; PFAM: LICD Protein Family
YP_003800581.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: ele:Elen_2032 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: C8WIV4 Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein
YP_003800582.1	KEGG: ele:Elen_2036 hypothetical protein; SPTR: C8WIV8  uncharacterized protein
YP_003800583.1	InterPro IPR002656; KEGG: bln:Blon_2391 acyltransferase 3; PFAM: acyltransferase 3; SPTR: C0FY72  uncharacterized protein; PFAM: Acyltransferase family
YP_003800584.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cjd:JJD26997_0716  sugar transferase; PFAM: glycosyl transferase family 2; SPTR: A5ZUJ0  uncharacterized protein; PFAM: Glycosyl transferase family 2
YP_003800585.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: amu:Amuc_0945 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: A4EB35  uncharacterized protein; PFAM: Glycosyl transferase family 2
YP_003800586.1	COGs: COG3475 LPS biosynthesis protein; InterPro IPR007074; KEGG: ele:Elen_2035 LicD family protein; PFAM: LicD family protein; SPTR: C8WIV7 LicD family protein; PFAM: LICD Protein Family
YP_003800587.1	COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR000399:IPR011766:IPR017684; KEGG: fsu:Fisuc_0992 phosphonopyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; SPTR: B9CM13 phosphonopyruvate decarboxylase; TIGRFAM: phosphonopyruvate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: phosphonopyruvate decarboxylase
YP_003800588.1	COGs: COG4750 CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes; KEGG: fnu:FN1237 choline kinase; SPTR: B9CM12 Choline kinase; PFAM: Nucleotidyl transferase
YP_003800589.1	COGs: COG2513 PEP phosphonomutase; InterProIPR004820:IPR004821:IPR012698:IPR015813:IPR 014729; KEGG: ctc:CTC01698  phosphoenolpyruvate phosphomutase; PFAM: cytidylyltransferase; SPTR: B9CM11 phosphoenolpyruvate phosphomutase; TIGRFAM: phosphoenolpyruvate phosphomutase; cytidyltransferase-related domain protein; TIGRFAM: phosphoenolpyruvate phosphomutase; cytidyltransferase-related domain
YP_003800590.1	COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192:IPR017688:IPR015424:IPR015421; KEGG: bth:BT_1718  2-aminoethylphosphonate pyruvate aminotransferase; PFAM: aminotransferase class V; SPTR: B9CM10 Aminotransferase, class V; TIGRFAM: 2-aminoethylphosphonate aminotransferase; PFAM: Aminotransferase class-V; TIGRFAM: 2-aminoethylphosphonate aminotransferase
YP_003800591.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: ele:Elen_2054 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C4F928  uncharacterized protein; PFAM: Glycosyl transferase family 2
YP_003800592.1	KEGG: ele:Elen_2055 hypothetical protein; SPTR: C8WIX8  uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2304)
YP_003800593.1	COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: apv:Apar_1007 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; SPTR: B9CL58 Glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form
YP_003800594.1	COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR005888:IPR016040; KEGG: blo:BL0229 dTDP-glucose 4,6-dehydratase enzyme involved in rhamnose biosynthesis; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B6GCA7 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase
YP_003800595.1	COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterProIPR000888:IPR005913:IPR016040:IPR011051:IPR 014710; KEGG: blo:BL0228 fused dTDP-4-keto-L-rhamnose reductase and dTDP-4-keto-6-deoxyglucose-3,5-epimerase enzyme involved in rhamnose biosynthesis; PFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose 35-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase., dTDP-4-dehydrorhamnose reductase; SPTR: A4ECX5  uncharacterized protein; PFAM: RmlD substrate binding domain; dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose reductase
YP_003800597.1	COGs: COG4750 CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes; InterPro IPR002573:IPR011009; KEGG: apv:Apar_1003 transcriptional regulator, MarR family; PFAM: Choline/ethanolamine kinase; SPTR: B9CL54 CTP:phosphocholine cytidylyltransferase/choline kinase; PFAM: Choline/ethanolamine kinase; Nucleotidyl transferase
YP_003800598.1	InterPro IPR000620; KEGG: apv:Apar_1002 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: B9CL53 Integral membrane protein domain protein; PFAM: EamA-like transporter family
YP_003800599.1	COGs: COG5263 FOG: Glucan-binding domain (YG repeat); InterPro IPR002345:IPR002508:IPR002479:IPR018337; KEGG: shi:Shel_07880 glucan-binding domain-containing protein; PFAM: cell wall hydrolase/autolysin; cell wall binding repeat-containing protein; SMART: cell wall hydrolase/autolysin; SPTR: C9L5I0  cell wall binding repeat-containing domain protein; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; cell wall binding repeat; N-acetylmuramoyl-L-alanine amidase
YP_003800600.1	COGs: COG0162 Tyrosyl-tRNA synthetase; InterProIPR001412:IPR002305:IPR002307:IPR014729:IPR 002942; KEGG: apv:Apar_1009 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; SPTR: C2D7E7 Tyrosine--tRNA ligase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase
YP_003800601.1	COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: apv:Apar_0995 peptidase U32; PFAM: peptidase U32; SPTR: B9CL45 Peptidase, U32 family; PFAM: Collagenase; Peptidase family U32
YP_003800602.1	COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: apv:Apar_0994 nitrogen-fixing NifU domain protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: C2D7F0 NifU family protein; PFAM: NifU-like domain
YP_003800603.1	COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: apv:Apar_0992 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: C8W7I1 Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase
YP_003800604.1	COGs: COG3475 LPS biosynthesis protein; InterPro IPR007074; KEGG: blo:BL0209 hypothetical protein; PFAM: LicD family protein; SPTR: Q8G7N9  uncharacterized protein; PFAM: LICD Protein Family
YP_003800605.1	COGs: COG0615 Cytidylyltransferase; InterPro IPR004820:IPR004821:IPR006409:IPR014729; KEGG: fsu:Fisuc_0969 glycerol-3-phosphate cytidylyltransferase; PFAM: cytidylyltransferase; PRIAM: Glycerol-3-phosphate cytidylyltransferase; SPTR: A5ZUY6  uncharacterized protein; TIGRFAM: glycerol-3-phosphate cytidylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain; glycerol-3-phosphate cytidylyltransferase
YP_003800606.1	KEGG: apv:Apar_0987 hypothetical protein; SPTR: B9CL39  uncharacterized protein
YP_003800607.1	InterPro IPR001087:IPR013830:IPR013831; KEGG: sgr:SGR_5103  lipoprotein; PFAM: lipolytic protein G-D-S-L family; SPTR: B6XXJ6  uncharacterized protein; PFAM: GDSL-like Lipase/Acylhydrolase
YP_003800608.1	COGs: COG0217 conserved hypothetical protein; InterPro IPR002876:IPR017856; KEGG: apv:Apar_0323 protein of unknown function DUF28; PFAM: protein of unknown function DUF28; SPTR: B9CMP5  uncharacterized protein; PFAM: Domain of unknown function DUF28; TIGRFAM: conserved hypothetical protein TIGR01033
YP_003800609.1	InterPro IPR001623; KEGG: KLTH0H10032p; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: C5E337 KLTH0H10032p; PFAM: DnaJ domain
YP_003800610.1	KEGG: apv:Apar_0387 hypothetical protein; SPTR: C8W9N0  uncharacterized protein
YP_003800611.1	InterPro IPR018730; KEGG: apv:Apar_0388 hypothetical protein; PFAM: Protein of unknown function DUF2273; SPTR: B9CL29  uncharacterized protein; PFAM: Small integral membrane protein (DUF2273)
YP_003800612.1	COGs: COG1302 conserved hypothetical protein; InterPro IPR005531; KEGG: apv:Apar_0389 protein of unknown function DUF322; PFAM: protein of unknown function DUF322; SPTR: C2D7X9 Possible alkaline shock protein 23; PFAM: Protein of unknown function (DUF322)
YP_003800613.1	COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR013221:IPR013564; KEGG: ele:Elen_3001 domain of unknown function DUF1727; PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; SPTR: C2D7X8 Possible UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; PFAM: Domain of unknown function (DUF1727); Mur ligase middle domain
YP_003800614.1	COGs: COG3442 glutamine amidotransferase; InterPro IPR011698:IPR017929; KEGG: ele:Elen_3001 domain of unknown function DUF1727; PFAM: CobB/CobQ domain protein glutamine amidotransferase; SPTR: C2D7X7 Adenosylcobyric acid synthase (Glutamine-hydrolyzing); PFAM: CobB/CobQ-like glutamine amidotransferase domain
YP_003800615.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611:IPR002139; KEGG: ccu:Ccur_04400 sugar kinase, ribokinase; PFAM: PfkB domain protein; SPTR: C2D7X6 Possible ribokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase
YP_003800616.1	KEGG: bbr:BB1907  integral membrane protein; SPTR: C2D7X5  uncharacterized protein; PFAM: Acyltransferase family
YP_003800617.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: cbe:Cbei_4797 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: A4E7Q2  uncharacterized protein; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003800618.1	COGs: COG1288 membrane protein; InterPro IPR018385; KEGG: cdl:CDR20291_1606  C4-dicarboxylate anaerobic carrier; PFAM: C4-dicarboxylate anaerobic carrier-like; SPTR: A4E7Q1  uncharacterized protein; PFAM: C4-dicarboxylate anaerobic carrier
YP_003800619.1	COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108:IPR011059; KEGG: ele:Elen_2060 amidohydrolase 3; PFAM: Amidohydrolase 3; SPTR: A4E7Q0  uncharacterized protein; PFAM: Amidohydrolase family
YP_003800620.1	COGs: COG2222 phosphosugar isomerase; InterPro IPR001347; KEGG: cbe:Cbei_4799 sugar isomerase (SIS); PFAM: sugar isomerase (SIS); SPTR: A4E7P8  uncharacterized protein; PFAM: SIS domain
YP_003800621.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: cbe:Cbei_4798 ribokinase-like domain-containing protein; PFAM: PfkB domain protein; SPTR: A4E7P7  uncharacterized protein; PFAM: pfkB family carbohydrate kinase
YP_003800622.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR011527:IPR 003593:IPR017940; KEGG: shi:Shel_26110 ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: B9CNG6 ABC transporter, ATP-binding protein; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003800623.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR011527:IPR 003593:IPR017940; KEGG: shi:Shel_26120 ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: B9CNG5 ABC transporter, ATP-binding protein; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003800624.1	SPTR: C0B6U6  uncharacterized protein
YP_003800625.1	KEGG: ele:Elen_1174 hypothetical protein; SPTR: C8WGA3  uncharacterized protein
YP_003800626.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR001789:IPR000792:IPR011991:IPR011006:IPR 016032; KEGG: bln:Blon_1414 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: C5EB28 Two-component system protein response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_003800627.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594; KEGG: bln:Blon_1415 histidine kinase, dimerisation and phosphoacceptor region; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SPTR: B7GRS0 Histidine kinase, dimerisation and phosphoacceptor region; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003800628.1	COGs: COG4200 conserved hypothetical protein; KEGG: shi:Shel_05790 hypothetical protein; SPTR: C7N3P7 Uncharacterized conserved protein
YP_003800629.1	KEGG: shi:Shel_05780 hypothetical protein; SPTR: C7N3P6  uncharacterized protein
YP_003800630.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: shi:Shel_05770 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C7N3P5 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter
YP_003800631.1	COGs: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); InterPro IPR000515:IPR007210; KEGG: cdl:CDR20291_3075  osmoprotectant ABC transporter, substrate-binding/permease protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; SPTR: C0EF19  uncharacterized protein; PFAM: Binding-protein-dependent transport system inner membrane component; Substrate binding domain of ABC-type glycine betaine transport system
YP_003800632.1	COGs: COG1125 ABC-type proline/glycine betaine transport systems ATPase components; InterPro IPR003439:IPR017871:IPR003593; KEGG: cdl:CDR20291_3074  osmoprotectant acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B0MIA3  uncharacterized protein; PFAM: ABC transporter
YP_003800633.1	KEGG: ccu:Ccur_11860 hypothetical protein; SPTR: B9CN81 ATPase protein
YP_003800634.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: ere:EUBREC_1220 rhodanese-related sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: B9CNG3 Rhodanese domain protein; PFAM: Rhodanese-like domain
YP_003800635.1	COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200:IPR000150:IPR006379; KEGG: Cof-like hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: C4C3E9 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB
YP_003800636.1	COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase family; InterPro IPR001670:IPR018211; KEGG: shi:Shel_07410 Fe-dependent oxidoreductase, alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: C7N4G3 Fe-dependent oxidoreductase, alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase
YP_003800637.1	KEGG: apv:Apar_1259 hypothetical protein; SPTR: C8W894  uncharacterized protein
YP_003800638.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: apv:Apar_1260 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: B9CMF0 Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding domain
YP_003800639.1	COGs: COG3142 Uncharacterized protein involved in copper resistance; InterPro IPR005627; KEGG: efa:EF2667 copper homeostasis protein, PFAM: CutC family protein; SPTR: A4E7W9  uncharacterized protein; PFAM: CutC family
YP_003800640.1	KEGG: apv:Apar_1313 hypothetical protein; SPTR: C8W8E6  uncharacterized protein
YP_003800641.1	COGs: COG3716 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IID; InterPro IPR004704; KEGG: apv:Apar_1314 PTS system mannose/fructose/sorbose family IID component; PFAM: PTS system mannose/fructose/sorbose family IID component; SPTR: C8W8E7 PTS system mannose/fructose/sorbose family IID component; PFAM: PTS system mannose/fructose/sorbose family IID component
YP_003800642.1	COGs: COG3715 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIC; InterPro IPR004700:IPR000792; KEGG: apv:Apar_1315 phosphotransferase system PTS sorbose-specific IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; SPTR: C8W8E8 phosphotransferase system PTS sorbose-specific IIC subunit; PFAM: PTS system sorbose-specific iic component
YP_003800643.1	COGs: COG3444 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIB; InterPro IPR004720; KEGG: apv:Apar_1316 PTS system sorbose subfamily IIB component; PFAM: PTS system sorbose subfamily IIB component; SPTR: C8W8E9 PTS system sorbose subfamily IIB component; PFAM: PTS system sorbose subfamily IIB component
YP_003800644.1	COGs: COG2893 phosphotransferase system mannose/fructose-specific component IIA; InterPro IPR004701; KEGG: apv:Apar_1317 PTS system fructose subfamily IIA component; PFAM: PTS system fructose subfamily IIA component; SPTR: C8W8F0 PTS system fructose subfamily IIA component; PFAM: PTS system fructose IIA component
YP_003800645.1	COGs: COG2190 phosphotransferase system IIA components; InterPro IPR001127:IPR016130:IPR011055; KEGG: gbr:Gbro_2915 PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; SPTR: B1CC93  uncharacterized protein; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
YP_003800646.1	COGs: COG3804 conserved hypothetical protein related to dihydrodipicolinate reductase; InterPro IPR000846:IPR016040; KEGG: blt:Balat_1124 hypothetical protein; PFAM: dihydrodipicolinate reductase; SPTR: A8S283  uncharacterized protein
YP_003800647.1	COGs: COG3885 conserved hypothetical protein; InterPro IPR004183:IPR002733; KEGG: shi:Shel_17380 hypothetical protein; PFAM: AMMECR1 domain protein; Extradiol ring-cleavage dioxygenase class III protein subunit B; SPTR: C9KP92 3,4-dihydroxyphenylacetate 2,3-dioxygenase, /AMMECR1 domain protein; PFAM: AMMECR1; Catalytic LigB subunit of aromatic ring-opening dioxygenase; TIGRFAM: conserved hypothetical protein TIGR00296
YP_003800648.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197:IPR016431; KEGG: ele:Elen_1694 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: C8WHR9 Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_003800649.1	InterPro IPR001647:IPR012287:IPR009057; KEGG: tde:TDE1114 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Q73NN8 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003800650.1	KEGG: tde:TDE1113 hypothetical protein; SPTR: Q73NN9  uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport
YP_003800651.1	COGs: COG3315 O-Methyltransferase involved in polyketide biosynthesis; KEGG: fnu:FN0984 tetracenomycin polyketide synthesis O-methyltransferase TcmP; SPTR: C8PTG7 Conjugative transposon O-methyltransferase; PFAM: Leucine carboxyl methyltransferase
YP_003800652.1	COGs: COG0450 Peroxiredoxin; InterProIPR000866:IPR019479:IPR012335:IPR012336:IPR 017936:IPR017559; KEGG: apv:Apar_0908 peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; PRIAM: Peroxiredoxin; SPTR: B9CKZ0 Peroxiredoxin; TIGRFAM: peroxiredoxin; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; TIGRFAM: peroxiredoxin
YP_003800653.1	COGs: COG1114 Branched-chain amino acid permease; InterPro IPR004685; KEGG: ele:Elen_1450 branched-chain amino acid transport system II carrier protein; PFAM: branched-chain amino acid transport system II carrier protein; SPTR: C4FAI3  uncharacterized protein; TIGRFAM: branched-chain amino acid transport system II carrier protein; PFAM: Branched-chain amino acid transport protein; TIGRFAM: branched-chain amino acid uptake carrier
YP_003800654.1	KEGG: shi:Shel_25880 hypothetical protein; SPTR: A8SF41  uncharacterized protein
YP_003800655.1	KEGG: ctc:CTC02470 hypothetical protein; SPTR: C0EU68  uncharacterized protein
YP_003800656.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647:IPR012287:IPR009057; KEGG: cpy:Cphy_1856 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: B0MC72  uncharacterized protein; PFAM: Bacterial regulatory proteins, tetR family
YP_003800657.1	COGs: COG2323 membrane protein; InterPro IPR007353; KEGG: ccu:Ccur_10230 predicted membrane protein; PFAM: protein of unknown function DUF421; SPTR: C7MP74 Predicted membrane protein; PFAM: Protein of unknown function (DUF421)
YP_003800658.1	KEGG: ccu:Ccur_10240 hypothetical protein; SPTR: C7MP75  uncharacterized protein; PFAM: Protein of unknown function (DUF3290)
YP_003800659.1	COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200:IPR006379; KEGG: apv:Apar_0157 HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: B9CM54 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB
YP_003800660.1	COGs: COG1621 Beta-fructosidase (levanase/invertase); InterPro IPR013148:IPR013189:IPR008985:IPR001362; KEGG: bhy:BHWA1_00077 beta-fructosidase (levanase/invertase); PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; SPTR: B9CM47 Sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolases family 32 C terminal; Glycosyl hydrolases family 32 N-terminal domain
YP_003800661.1	COGs: COG2893 phosphotransferase system mannose/fructose-specific component IIA; InterPro IPR004701; KEGG: lrh:LGG_02748 PTS system, mannose/fructose/sorbose IIAB component (AhaA); PFAM: PTS system fructose subfamily IIA component; SPTR: C0D6A7  uncharacterized protein; PFAM: PTS system fructose IIA component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA component
YP_003800662.1	COGs: COG3444 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIB; InterPro IPR004720; KEGG: lrh:LGG_00415 PTS system, IIB component; PFAM: PTS system sorbose subfamily IIB component; SPTR: A8S2X5  uncharacterized protein; PFAM: PTS system sorbose subfamily IIB component
YP_003800663.1	COGs: COG3715 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIC; InterPro IPR004700; KEGG: lcb:LCABL_29390 C component PTS system mannose-specific enzyme II; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; SPTR: B0MAV4  uncharacterized protein; PFAM: PTS system sorbose-specific iic component
YP_003800664.1	COGs: COG3716 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IID; InterPro IPR004704; KEGG: cbk:CLL_A3357 PTS system mannose/fructose/sorbose family IID component; PFAM: PTS system mannose/fructose/sorbose family IID component; SPTR: B9Y2V4  uncharacterized protein; PFAM: PTS system mannose/fructose/sorbose family IID component
YP_003800665.1	COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterProIPR013154:IPR013149:IPR002328:IPR011032:IPR 016040; KEGG: tde:TDE0075 sorbitol dehydrogenase, PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: B0NED0  uncharacterized protein; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_003800666.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771:IPR013785; KEGG: lrl:LC705_00403 fructose-bisphosphate aldolase, class II family; PFAM: ketose-bisphosphate aldolase class-II; PRIAM: Tagatose-bisphosphate aldolase; SPTR: C5EPN9 Fructose-1,6-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases
YP_003800667.1	COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase family; InterPro IPR001670:IPR018211; KEGG: cth:Cthe_0101 iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: A3DBL3 Iron-containing alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase
YP_003800668.1	COGs: COG2390 Transcriptional regulator contains sigma factor-related N-terminal domain; InterPro IPR007324; KEGG: tle:Tlet_1801 DeoR family transcriptional regulator; PFAM:  sugar-binding domain protein; SPTR: C5EFP8 Transcriptional regulator of sorbose uptake and utilization genes; PFAM:  sugar-binding domain
YP_003800669.1	COGs: COG1373 ATPase (AAA+ superfamily); KEGG: blo:BL1089 hypothetical protein; SPTR: C2GUI5 Possible ATPase
YP_003800670.1	COGs: COG0011 conserved hypothetical protein; InterPro IPR002767:IPR016198; KEGG: shi:Shel_13680 hypothetical protein; PFAM: protein of unknown function DUF77; SPTR: C7N656 Uncharacterized conserved protein; PFAM: Domain of unknown function DUF77
YP_003800671.1	COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: shi:Shel_13670 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C7N655 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003800672.1	COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR015168:IPR017909:IPR006311; KEGG: shi:Shel_13660 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component; PFAM: NMT1/THI5 like domain protein; SPTR: C2D8T3 Hydroxymethylpyrimidine ABC superfamily ATP binding cassette transporter, binding protein; PFAM: NMT1/THI5 like; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003800673.1	COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: apv:Apar_0393 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C2D8T4 ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter
YP_003800674.1	COGs: COG1368 phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917:IPR017849:IPR017850; KEGG: ele:Elen_1805 sulfatase; PFAM: sulfatase; SPTR: A4ECQ3  uncharacterized protein; PFAM: Sulfatase
YP_003800675.1	KEGG: bln:Blon_1005 hypothetical protein; SPTR: B7GQM1  uncharacterized protein
YP_003800676.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771:IPR013785:IPR011289; KEGG: apv:Apar_0396 fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: C8W9N9 Fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist
YP_003800677.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR014710:IPR018490; KEGG: ele:Elen_0213 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: C0E944  uncharacterized protein; PFAM: Cyclic nucleotide-binding domain
YP_003800678.1	COGs: COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; InterPro IPR001360:IPR013781:IPR018120:IPR017853; KEGG: cac:CAC1405 beta-glucosidase; PFAM: glycoside hydrolase family 1; SPTR: B6GAQ5  uncharacterized protein; PFAM: Glycosyl hydrolase family 1
YP_003800679.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: apv:Apar_0397 transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; SPTR: C8W9P0 Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator)
YP_003800680.1	COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871:IPR011341; KEGG: apv:Apar_0398 SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; SPTR: B9CL17 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family
YP_003800681.1	COGs: COG0520 Selenocysteine lyase; InterProIPR000192:IPR015421:IPR020578:IPR015424:IPR 010970; KEGG: apv:Apar_0399 cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; SPTR: B9CL16 Cysteine desulfurase; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily
YP_003800682.1	COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825; KEGG: apv:Apar_0400 SufBD protein; PFAM: SufBD protein; SPTR: C2D6T8  uncharacterized protein; PFAM: Uncharacterized protein family (UPF0051)
YP_003800683.1	COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR010231; KEGG: apv:Apar_0401 FeS assembly protein SufB; PFAM: SufBD protein; SPTR: B9CL14 FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB
YP_003800684.1	COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003439:IPR017871:IPR010230; KEGG: apv:Apar_0402 FeS assembly ATPase SufC; PFAM: ABC transporter related; SPTR: C2D6U0 ABC superfamily ATP binding cassette transporter, ABC protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC
YP_003800685.1	InterPro IPR011701:IPR016196; KEGG: sgr:SGR_6801 major facilitator superfamily permease; PFAM: major facilitator superfamily MFS_1; SPTR: B6G7X4  uncharacterized protein; PFAM: Major Facilitator Superfamily
YP_003800686.1	COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; InterPro IPR003837; KEGG: ccu:Ccur_11910 glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit; SPTR: A4E8M5  uncharacterized protein; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
YP_003800687.1	COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR000120:IPR017871:IPR020556:IPR004412; KEGG: ccu:Ccur_11900 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; PFAM: Amidase; SPTR: A4E8M4  uncharacterized protein; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
YP_003800688.1	COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); InterProIPR006075:IPR006107:IPR018027:IPR017958:IPR 003789:IPR004413; KEGG: ele:Elen_1074 glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB central domain protein; Asn/Gln amidotransferase; SPTR: C4FA42  uncharacterized protein; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit
YP_003800689.1	COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660:IPR012335:IPR012336:IPR006504; KEGG: apv:Apar_1109 arsenate reductase and related; PFAM: arsenate reductase and related; SPTR: B9CNW3 Arsenate reductase; PFAM: ArsC family; TIGRFAM: conserved hypothetical protein
YP_003800690.1	KEGG: apv:Apar_0874 hypothetical protein; SPTR: B9CK47  uncharacterized protein; PFAM: Protein of unknown function (DUF2974)
YP_003800691.1	COGs: COG1950 membrane protein; InterPro IPR007165; KEGG: apv:Apar_0875 membrane protein of unknown function; PFAM: membrane protein of unknown function; SPTR: B9CK46 Membrane spanning protein; PFAM: Membrane protein of unknown function
YP_003800692.1	COGs: COG4496 conserved hypothetical protein; InterPro IPR000831:IPR010921:IPR013368; KEGG: aac:Aaci_2379 TrpR like protein, YerC/YecD; PFAM: Trp repressor; SPTR: B6GE86  uncharacterized protein; TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor protein; TIGRFAM: TrpR-related protein YerC/YecD
YP_003800693.1	COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: apv:Apar_0871 hypothetical protein; SPTR: B9CK49  uncharacterized protein
YP_003800694.1	COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212:IPR014016:IPR014017; KEGG: apv:Apar_0870 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: C8W759 UvrD/REP helicase; PFAM: UvrD/REP helicase
YP_003800695.1	COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004013:IPR011708:IPR004365:IPR016195:IPR 003141:IPR004805; KEGG: apv:Apar_0898 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; SPTR: C8W788 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_003800696.1	InterPro IPR003010; KEGG: apv:Apar_0896 amidohydrolase-like protein; SPTR: C8W786 Amidohydrolase-like protein
YP_003800697.1	COGs: COG0817 Holliday junction resolvasome endonuclease subunit; InterPro IPR002176:IPR012337; KEGG: apv:Apar_0895 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: C2D6U6 Crossover junction endodeoxyribonuclease; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC
YP_003800698.1	COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; InterProIPR013849:IPR011114:IPR012340:IPR010994:IPR 016027:IPR003583:IPR000085; KEGG: apv:Apar_0894 Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; SPTR: C8W783 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit
YP_003800699.1	COGs: COG2255 Holliday junction resolvasome helicase subunit; InterProIPR008824:IPR003959:IPR008823:IPR011991:IPR 003593:IPR004605; KEGG: apv:Apar_0893 Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; SMART: AAA ATPase; SPTR: C2D6U8 Crossover junction endoribonuclease subunit B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit
YP_003800700.1	KEGG: apv:Apar_0892 hypothetical protein; SPTR: B9CKW4  uncharacterized protein
YP_003800701.1	COGs: COG4932 outer membrane protein; InterProIPR008456:IPR008454:IPR019948:IPR011252:IPR 008970:IPR008966:IPR001899:IPR019931; KEGG: apv:Apar_0961 LPXTG-motif cell wall anchor domain protein; PFAM: Cna B domain protein; Collagen binding domain protein; Gram-positive anchor; SPTR: C8W7F0 LPXTG-motif cell wall anchor domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Gram positive anchor; Collagen binding domain; Cna protein B-type domain; TIGRFAM: LPXTG-motif cell wall anchor domain
YP_003800702.1	COGs: COG1278 Cold shock protein; InterProIPR002059:IPR012340:IPR019844:IPR012156:IPR 016027:IPR011129; KEGG: apv:Apar_0890 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: C2D6V0 CspA family cold shock transcriptional regulator; PFAM: 'Cold-shock' DNA-binding domain
YP_003800703.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650:IPR010964; KEGG: apv:Apar_0375 dipeptidase; PFAM: peptidase M20; SPTR: B9CNS5  dipeptidase; TIGRFAM: dipeptidase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: dipeptidase
YP_003800704.1	COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834:IPR005833:IPR006402; KEGG: apv:Apar_0889 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: B9CP99 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_003800705.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650:IPR010964; KEGG: apv:Apar_0375 dipeptidase; PFAM: peptidase M20; SPTR: B9CNS5  dipeptidase; TIGRFAM: dipeptidase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: dipeptidase
YP_003800706.1	InterPro IPR011990:IPR019734:IPR013026; KEGG: apv:Apar_0887 hypothetical protein; SPTR: B9CK29 Tetratricopeptide repeat domain protein
YP_003800707.1	KEGG: dae:Dtox_1213 proton-translocating NADH-quinone oxidoreductase, chain L; SPTR: Q6RGA5 ATP synthase protein 8 (Fragment)
YP_003800708.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509:IPR011330; KEGG: ccu:Ccur_10670 predicted xylanase/chitin deacetylase; PFAM: polysaccharide deacetylase; SPTR: C7MPB8 Predicted xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase
YP_003800709.1	COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: eel:EUBELI_00766 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: B6G9N7  uncharacterized protein; PFAM: Protein of unknown function (DUF1015)
YP_003800710.1	COGs: COG0111 phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140:IPR016040; KEGG: ere:EUBREC_1874 hypothetical protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: B6G9P0  uncharacterized protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_003800711.1	COGs: COG1932 phosphoserine aminotransferase; InterPro IPR000192:IPR015421:IPR015422:IPR015424; KEGG: ele:Elen_1324 phosphoserine aminotransferase; PFAM: aminotransferase class V; PRIAM: phosphoserine transaminase; SPTR: B6G9P1 phosphoserine aminotransferase; PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase
YP_003800712.1	COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: apv:Apar_0886 haloacid dehalogenase domain protein hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C2D8W3 Possible 5'-nucleotidase; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_003800713.1	KEGG: ccu:Ccur_10850 hypothetical protein; SPTR: C7MPD6  uncharacterized protein
YP_003800714.1	COGs: COG0661 unusual protein kinase; InterPro IPR004147:IPR011009; KEGG: bln:Blon_0231 ABC-1 domain protein; PFAM: ABC-1 domain protein; SPTR: A7A3C6  uncharacterized protein; PFAM: ABC1 family
YP_003800715.1	COGs: COG0797 Lipoprotein; InterPro IPR005132:IPR009009; KEGG: shi:Shel_06750 hypothetical protein; PFAM: Rare lipoprotein A; SPTR: B6GCR4  uncharacterized protein; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel
YP_003800716.1	COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130:IPR015891; KEGG: apv:Apar_1019 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; SPTR: C8W7K8 Peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_003800717.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR011527:IPR 003593:IPR017940; KEGG: cpy:Cphy_1238 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: B6GDT0  uncharacterized protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003800718.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR011527:IPR 003593:IPR017940; KEGG: cth:Cthe_3147 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: A7VZ43  uncharacterized protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003800719.1	InterPro IPR000835:IPR011991; KEGG: apv:Apar_0883 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C4FBB0  uncharacterized protein; PFAM: MarR family
YP_003800720.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: apv:Apar_0882 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; SPTR: B9CK36 Alpha/beta superfamily hydrolase; PFAM: alpha/beta hydrolase fold
YP_003800721.1	COGs: COG0143 Methionyl-tRNA synthetase; InterPro IPR015413:IPR014729:IPR009080; KEGG: apv:Apar_0881 methionine--tRNA ligase; PFAM: tRNA synthetase class I (M); PRIAM: Methionine--tRNA ligase; SPTR: B9CK38 Methionine--tRNA ligase; PFAM: tRNA synthetases class I (M)
YP_003800722.1	COGs: COG1636 conserved hypothetical protein; InterPro IPR003828; KEGG: apv:Apar_0879 protein of unknown function DUF208; PFAM: protein of unknown function DUF208; SPTR: C8W768  uncharacterized protein; PFAM: Uncharacterized BCR, COG1636
YP_003800723.1	COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: apv:Apar_0878 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: B9CK41 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_003800724.1	InterPro IPR009053; KEGG: apv:Apar_0877 hypothetical protein; SPTR: B9CK44  uncharacterized protein
YP_003800725.1	COGs: COG1925 phosphotransferase system HPr-related protein; InterPro IPR005698:IPR000032:IPR001020; KEGG: apv:Apar_0876 phosphotransferase system, phosphocarrier protein HPr; PFAM: phosphoryl transfer system HPr; SPTR: C2D8V9 PTS family porter component HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: PTS HPr component phosphorylation site; TIGRFAM: phosphotransferase System HPr (HPr) Family
YP_003800726.1	COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR002616:IPR004803; KEGG: apv:Apar_0518 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: A4EAN0 Queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming
YP_003800727.1	COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335:IPR005791; KEGG: ccu:Ccur_12600 protein-export membrane protein SecF/protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: C2D7P6 Protein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: Protein export membrane protein; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family
YP_003800728.1	COGs: COG0341 Preprotein translocase subunit SecF; InterPro IPR003335:IPR005665; KEGG: ele:Elen_0984 protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: C2D7P7 Possible preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: Protein export membrane protein; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF
YP_003800729.1	COGs: COG0608 Single-stranded DNA-specific exonuclease; InterProIPR001667:IPR003156:IPR011545:IPR001650:IPR 014001:IPR014021:IPR004610; KEGG: apv:Apar_0519 single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; SPTR: B6GB88  uncharacterized protein; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: DHHA1 domain; DHH family; Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ
YP_003800730.1	COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR006674:IPR007685:IPR004095:IPR002912:IPR 012675:IPR012676:IPR003607:IPR004811; KEGG: apv:Apar_0520 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain protein; amino acid-binding ACT domain protein; PRIAM: GTP diphosphokinase; SMART: metal-dependent phosphohydrolase HD region; SPTR: C2D7P9 GTP diphosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: HD domain; ACT domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family
YP_003800731.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: apv:Apar_0521 beta-lactamase domain protein; SPTR: C8WA14 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003800732.1	InterPro IPR001387:IPR010982; KEGG: ele:Elen_1172 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C8WGA1 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix
YP_003800733.1	COGs: COG0290 Translation initiation factor 3 (IF-3); InterPro IPR019814:IPR019815:IPR001288; KEGG: apv:Apar_0522 translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; SPTR: A4E7V8  uncharacterized protein; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3
YP_003800734.1	InterPro IPR001706:IPR018265; KEGG: apv:Apar_0523 ribosomal protein L35; PFAM: ribosomal protein L35; SPTR: C2D7Q2 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35
YP_003800735.1	COGs: COG0292 Ribosomal protein L20; InterPro IPR005813; KEGG: apv:Apar_0524 ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: C8WA17 Ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20
YP_003800736.1	KEGG: rha:RHA1_ro01240 Mg2+/Co2+ transporter; SPTR: C1G937 Alpha/beta hydrolase
YP_003800737.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481:IPR018480; KEGG: apv:Apar_0525 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: C2D6Z4 Possible phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase family 4
YP_003800738.1	InterPro IPR000182:IPR016181; KEGG: cbe:Cbei_2368 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: A5TSB4 Possible histone acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003800739.1	COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein; InterPro IPR001989:IPR016431; KEGG: apv:Apar_0526 radical SAM domain protein; SPTR: B9CKQ2 Radical SAM domain protein
YP_003800740.1	KEGG: apv:Apar_0527 hypothetical protein; SPTR: B9CKQ1  uncharacterized protein
YP_003800741.1	COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR015977:IPR007229:IPR006405; KEGG: apv:Apar_0528 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; SPTR: B9CKQ0 Nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM:  nicotinate phosphoribosyltransferase
YP_003800742.1	COGs: COG0018 Arginyl-tRNA synthetase; InterProIPR005148:IPR015945:IPR008909:IPR014729:IPR 001412:IPR009080:IPR001278; KEGG: apv:Apar_0529 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; DALR anticodon binding domain protein; PRIAM: Arginine--tRNA ligase; SPTR: C2D7C5 Possible arginine--tRNA ligase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase
YP_003800743.1	InterPro IPR000835:IPR001845:IPR011991; KEGG: apv:Apar_0530 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; regulatory protein ArsR; SMART: regulatory protein MarR; SPTR: B9CKP8 Transcriptional regulator, MarR family; PFAM: Bacterial regulatory protein, arsR family; MarR family
YP_003800744.1	COGs: COG1158 Transcription termination factor; InterProIPR017956:IPR011113:IPR000194:IPR011129:IPR 003593:IPR004665; KEGG: apv:Apar_0531 transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; AT hook, DNA-binding motif; SMART: Cold shock protein; AAA ATPase; SPTR: B9CKP7 Transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho
YP_003800746.1	KEGG: apv:Apar_0532 hypothetical protein; SPTR: C2D7C7  uncharacterized protein
YP_003800747.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828:IPR017909:IPR000709:IPR006311; KEGG: apv:Apar_0533 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: C2D7C9 Branched chain amino acid ABC superfamily ATP binding cassette transporter, binding protein; PFAM: Receptor family ligand binding region; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003800748.1	COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: apv:Apar_0534 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: B9CKP3 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003800749.1	COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: apv:Apar_0535 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C8WA28 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003800750.1	COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: apv:Apar_0536 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C2D7D2 ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter
YP_003800751.1	COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: apv:Apar_0537 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C2D7D3 ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter
YP_003800752.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182:IPR016181; KEGG: ere:EUBREC_3362  acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C8NHC3 GNAT family acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_003800753.1	COGs: COG0083 Homoserine kinase; InterProIPR006204:IPR013750:IPR014721:IPR006203:IPR 000870:IPR020568; KEGG: apv:Apar_0538 homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; PRIAM: Homoserine kinase; SPTR: B9CKN9 Homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: homoserine kinase
YP_003800754.1	COGs: COG0498 Threonine synthase; InterPro IPR001926:IPR004450; KEGG: apv:Apar_0539 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; PRIAM: Threonine synthase; SPTR: B9CKN8 Threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase
YP_003800755.1	COGs: COG0460 Homoserine dehydrogenase; InterPro IPR005106:IPR001342:IPR019811:IPR016040; KEGG: apv:Apar_0540 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; PRIAM: Homoserine dehydrogenase; SPTR: B9CKN7 Homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, NAD binding domain; Homoserine dehydrogenase
YP_003800756.1	COGs: COG0527 Aspartokinase; InterPro IPR001048:IPR002912:IPR018042:IPR001341; KEGG: apv:Apar_0541 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; PRIAM: Aspartate kinase; SPTR: B9CKN6 Aspartokinase; TIGRFAM: aspartate kinase; PFAM: Amino acid kinase family; ACT domain; TIGRFAM: aspartate kinase
YP_003800757.1	COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterProIPR000534:IPR012280:IPR012080:IPR016040:IPR 005986; KEGG: apv:Apar_0542 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: B9CKN5 Aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)
YP_003800758.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR007627:IPR013249:IPR013325:IPR013324:IPR 014284; KEGG: shi:Shel_10220 RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C7N572 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003800759.1	KEGG: shi:Shel_10230 hypothetical protein; SPTR: C7N573  uncharacterized protein
YP_003800760.1	COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: ele:Elen_0663 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C4FC17  uncharacterized protein; PFAM: ABC transporter
YP_003800761.1	COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515:IPR010065; KEGG: ccu:Ccur_13320 amino acid ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C7ML62 Amino acid ABC transporter membrane protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_003800762.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638:IPR017909; KEGG: ele:Elen_0661 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: A4EB68  uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_003800763.1	KEGG: ele:Elen_0908 hypothetical protein; SPTR: C8WNM1  uncharacterized protein
YP_003800764.1	COGs: COG4932 outer membrane protein; InterPro IPR008454; KEGG: shi:Shel_08160  collagen-binding protein; PFAM: Cna B domain protein; SPTR: C0BE57  uncharacterized protein; PFAM: Cna protein B-type domain
YP_003800765.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545:IPR001650:IPR000629:IPR014001:IPR 014021:IPR014014; KEGG: ele:Elen_1240 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: B6G9T0  uncharacterized protein (Fragment); PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_003800766.1	InterPro IPR000086:IPR020084:IPR015797; KEGG: apv:Apar_0027 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: B9CLU6 Nudix hydrolase; PFAM: NUDIX domain
YP_003800767.1	COGs: COG1482 phosphomannose isomerase; InterPro IPR001250:IPR014710:IPR011051; KEGG: apv:Apar_0314 mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; PRIAM: Mannose-6-phosphate isomerase; SPTR: C2D854 Mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I
YP_003800768.1	COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: shi:Shel_20780 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C7N854 Transcriptional regulator, MarR family; PFAM: MarR family
YP_003800769.1	COGs: COG0386 Glutathione peroxidase; InterPro IPR012335:IPR012336:IPR000889; KEGG: cpy:Cphy_2663 glutathione peroxidase; SPTR: A9KN13 Glutathione peroxidase
YP_003800770.1	COGs: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); InterPro IPR011611:IPR017583; KEGG: apv:Apar_0599 1-phosphofructokinase; PFAM: PfkB domain protein; SPTR: C2D853 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: 1-phosphofructokinase
YP_003800771.1	COGs: COG1080 phosphoenolpyruvate-protein kinase (PTS system EI component); InterProIPR008731:IPR008279:IPR000121:IPR015813:IPR 018274:IPR006318; KEGG: apv:Apar_0600 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; SPTR: C2D852 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase
YP_003800772.1	COGs: COG1597 Sphingosine kinase; InterPro IPR001206:IPR005218; KEGG: apv:Apar_0601 diacylglycerol kinase catalytic region; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; SPTR: C2D849 Diacylglycerol kinase; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: conserved protein of unknown function cotranscribed with Bmr (bmrU)
YP_003800773.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterProIPR006097:IPR006096:IPR016040:IPR006095:IPR 014362; KEGG: shi:Shel_10490 glutamate dehydrogenase (NADP); PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; PRIAM: Glutamate dehydrogenase (NADP(+)); SPTR: B6GCU1  uncharacterized protein; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_003800774.1	COGs: COG0505 Carbamoylphosphate synthase small subunit; InterProIPR002474:IPR000991:IPR017926:IPR001317:IPR 011702:IPR006274; KEGG: apv:Apar_0612 carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; SPTR: C8WAA4 Carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit
YP_003800775.1	COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR005481:IPR005479:IPR005480:IPR011607:IPR 013817:IPR013816:IPR016185:IPR011761:IPR005483:IPR006275; KEGG: apv:Apar_0613 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; SPTR: C8WAA5 Carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit
YP_003800776.1	COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR008881:IPR008880:IPR005215; KEGG: apv:Apar_0614 trigger factor; PFAM: trigger factor domain protein; trigger factor domain; SPTR: C2D7X4 Peptidylprolyl isomerase; TIGRFAM: trigger factor; PFAM: Bacterial trigger factor protein (TF) C-terminus; Bacterial trigger factor protein (TF); TIGRFAM: trigger factor
YP_003800777.1	COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907:IPR018215; KEGG: apv:Apar_0615 endopeptidase Clp; PFAM: peptidase S14 ClpP; PRIAM: Endopeptidase Clp; SPTR: C2D7X3 ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP
YP_003800778.1	COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterProIPR010603:IPR013093:IPR019489:IPR003593:IPR 004487; KEGG: apv:Apar_0616 ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: C8WAA8 ATP-dependent Clp protease, ATP-binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX)
YP_003800779.1	COGs: COG0084 Mg-dependent DNase; InterPro IPR001130:IPR019793:IPR018228:IPR012278; KEGG: ele:Elen_2262 TatD-related deoxyribonuclease; PFAM: TatD-related deoxyribonuclease; SPTR: C4F9E6  uncharacterized protein; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family
YP_003800780.1	COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594:IPR016040:IPR009036:IPR001557; KEGG: ele:Elen_2263 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: C2GLB9 ThiF family protein; PFAM: ThiF family
YP_003800781.1	COGs: COG0525 Valyl-tRNA synthetase; InterProIPR002300:IPR013155:IPR019499:IPR014729:IPR 001412:IPR009080:IPR009008:IPR010978:IPR019754:IPR002303; KEGG: apv:Apar_0620 valyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; SPTR: B9CK22 Valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase
YP_003800782.1	COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: shi:Shel_24120 5,10-methenyltetrahydrofolate synthetase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: C7N1X9 5,10-methenyltetrahydrofolate synthetase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase
YP_003800783.1	COGs: COG1893 Ketopantoate reductase; InterProIPR013332:IPR013752:IPR016040:IPR013328:IPR 008927:IPR003710; KEGG: cbl:CLK_0605 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; PRIAM: 2-dehydropantoate 2-reductase; SPTR: C0CQS5 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase
YP_003800784.1	COGs: COG2759 Formyltetrahydrofolate synthetase; InterPro IPR000559:IPR020628; KEGG: apv:Apar_0621 formate--tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS; PRIAM: Formate--tetrahydrofolate ligase; SPTR: B9CK23 Formate--tetrahydrofolate ligase; PFAM: Formate--tetrahydrofolate ligase
YP_003800785.1	COGs: COG3404 Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR007044; KEGG: dsy:DSY0606 hypothetical protein; PFAM: Formiminotransferase-cyclodeaminase; SPTR: B0NCT3  uncharacterized protein; PFAM: Formiminotransferase-cyclodeaminase
YP_003800786.1	COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR020630:IPR020631:IPR016040:IPR000672; KEGG: shi:Shel_24890 methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methylenetetrahydrofolate dehydrogenase (NADP(+)); SPTR: C7N2I9 Methenyltetrahydrofolate cyclohydrolase /5,10-methylenetetrahydrofolate dehydrogenase (NADP+); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_003800787.1	COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221:IPR004101:IPR001645; KEGG: apv:Apar_0625 FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; PRIAM: Tetrahydrofolate synthase; SPTR: B9CJX4 Folylpolyglutamate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase
YP_003800788.1	KEGG: apv:Apar_0626 hypothetical protein; SPTR: B9CJX5  uncharacterized protein
YP_003800789.1	InterPro IPR013216; KEGG: apv:Apar_0758 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: C0BF30  uncharacterized protein; PFAM: Methyltransferase domain
YP_003800790.1	KEGG: ele:Elen_1303 hypothetical protein; SPTR: C8WGN1  uncharacterized protein
YP_003800791.1	COGs: COG1154 Deoxyxylulose-5-phosphate synthase; InterPro IPR005475:IPR005476:IPR015941:IPR009014; KEGG: apv:Apar_0060 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase domain protein; Transketolase central region; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: B9CLY0 1-deoxy-d-xylulose-5-phosphate synthase 1; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase
YP_003800793.1	COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR012947:IPR002314:IPR004154:IPR018163:IPR 006195:IPR018158:IPR002320; KEGG: ccu:Ccur_04450 threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; Anticodon-binding domain protein; PRIAM: Threonine--tRNA ligase; SPTR: C7MMM8 Threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase; TIGRFAM: threonyl-tRNA synthetase; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: threonyl-tRNA synthetase
YP_003800794.1	COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277:IPR015422:IPR015424; KEGG: apv:Apar_0628 hypothetical protein; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: C8WAC0  uncharacterized protein; PFAM: Cys/Met metabolism PLP-dependent enzyme
YP_003800795.1	COGs: COG1454 Alcohol dehydrogenase class IV; InterProIPR015590:IPR001670:IPR016162:IPR012079:IPR 016161; KEGG: apv:Apar_0629 iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; SPTR: B9CJX8 Aldehyde-alcohol dehydrogenase 2; PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase
YP_003800796.1	InterPro IPR002575:IPR011009; KEGG: emi:Emin_0754 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: A4ECK9  uncharacterized protein; PFAM: phosphotransferase enzyme family
YP_003800797.1	COGs: COG0262 Dihydrofolate reductase; InterPro IPR001796:IPR012259; KEGG: apv:Apar_0631 dihydrofolate reductase region; PFAM: dihydrofolate reductase region; SPTR: C8WAC3 Dihydrofolate reductase region; PFAM: Dihydrofolate reductase
YP_003800798.1	COGs: COG0207 Thymidylate synthase; InterPro IPR000398; KEGG: apv:Apar_0632 thymidylate synthase; PFAM: thymidylate synthase; SPTR: B9CJY5 Thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase
YP_003800799.1	KEGG: hypothetical protein; SPTR: A8PEJ9  uncharacterized protein
YP_003800800.1	COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086:IPR020084:IPR015797:IPR020476; KEGG: apv:Apar_0634 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: B9CJY6 Mutator MutT protein; PFAM: NUDIX domain; TIGRFAM: mutator mutT protein
YP_003800801.1	COGs: COG3884 Acyl-ACP thioesterase; InterPro IPR002864; KEGG: apv:Apar_0635 acyl-ACP thioesterase; PFAM: acyl-ACP thioesterase; SPTR: C8WAC7 Acyl-ACP thioesterase; PFAM: Acyl-ACP thioesterase
YP_003800802.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR016040; KEGG: hypothetical protein; PFAM: oxidoreductase domain protein; SPTR: C4F9C1  uncharacterized protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold
YP_003800803.1	COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: apv:Apar_0638 diacylglycerol kinase catalytic region; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; SPTR: B9CJZ1 Diacylglycerol kinase, catalytic region; PFAM: Diacylglycerol kinase catalytic domain
YP_003800804.1	COGs: COG0349 Ribonuclease D; InterPro IPR002562:IPR002121:IPR012337:IPR006292; KEGG: apv:Apar_0639 ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; PRIAM: Ribonuclease D; SMART: 3'-5' exonuclease; HRDC domain protein; SPTR: C8WAD1 Ribonuclease D; TIGRFAM: ribonuclease D; PFAM: HRDC domain; 3'-5' exonuclease; TIGRFAM: ribonuclease D
YP_003800805.1	COGs: COG2738 Zn-dependent protease; InterPro IPR007395; KEGG: apv:Apar_0640 peptidase membrane zinc metallopeptidase PFAM: peptidase membrane zinc metallopeptidase SPTR: C2D6M8 Membrane zinc metallopeptidase; PFAM:  neutral zinc metallopeptidase
YP_003800806.1	COGs: COG1570 Exonuclease VII large subunit; InterPro IPR004365:IPR020579:IPR003753; KEGG: apv:Apar_0641 exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: Exodeoxyribonuclease VII; SPTR: C2D6M7 Exodeoxyribonuclease 7 large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit
YP_003800807.1	InterPro IPR003761; KEGG: apv:Apar_0642 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; SPTR: C2D6M6 Exodeoxyribonuclease VII; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit
YP_003800808.1	COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310:IPR011151:IPR019808:IPR011146; KEGG: apv:Apar_0643 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: A4E7J8  uncharacterized protein; PFAM: HIT domain
YP_003800809.1	COGs: COG0282 Acetate kinase; InterPro IPR000890:IPR004372; KEGG: apv:Apar_0644 acetate kinase; PFAM: acetate and butyrate kinase; SPTR: B9CJZ7 Acetate kinase; TIGRFAM: acetate kinase; PFAM: Acetokinase family; TIGRFAM: acetate kinase
YP_003800810.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030:IPR016040; KEGG: smu:SMU.796 hypothetical protein; PFAM: NmrA family protein; SPTR: C2LSS1 NmrA family protein; PFAM: NmrA-like family
YP_003800811.1	KEGG: sgo:SGO_0396 PadR family transcriptional regulator; SPTR: B0G550  uncharacterized protein
YP_003800812.1	COGs: COG3868 conserved hypothetical protein; InterPro IPR004352; KEGG: shi:Shel_22100 hypothetical protein; PFAM: TM1410 hypothetical-related protein; SPTR: C7N0Z8 Uncharacterized conserved protein; PFAM: TM1410 hypothetical-related protein
YP_003800813.1	KEGG: tte:TTE0399 hypothetical protein; SPTR: C4F8Y5  uncharacterized protein
YP_003800814.1	InterPro IPR016181:IPR000182; KEGG: bvu:BVU_1459  acetyltransferase; SPTR: A6L0D2  acetyltransferase
YP_003800815.1	COGs: COG2017 Galactose mutarotase; InterPro IPR008183:IPR014718:IPR011013; KEGG: apv:Apar_0645 aldose 1-epimerase; PFAM: Aldose 1-epimerase; SPTR: B9CJY2 Aldose 1-epimerase; PFAM: Aldose 1-epimerase
YP_003800816.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR000515:IPR003439:IPR017871:IPR003593; KEGG: ccu:Ccur_03220 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: ABC transporter related; binding-protein-dependent transport systems inner membrane component; SMART: AAA ATPase; SPTR: A4EAG1  uncharacterized protein; PFAM: ABC transporter
YP_003800817.1	COGs: COG1866 phosphoenolpyruvate carboxykinase (ATP); InterPro IPR001272:IPR008210:IPR013035:IPR015994; KEGG: lba:Lebu_2281 phosphoenolpyruvate carboxykinase (ATP); PFAM: phosphoenolpyruvate carboxykinase (ATP); PRIAM: phosphoenolpyruvate carboxykinase (ATP); SPTR: C0EU39  uncharacterized protein; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); PFAM: phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP)
YP_003800818.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR019575:IPR013027:IPR012285:IPR009051:IPR 000759; KEGG: eel:EUBELI_00200 glutamate synthase (NADPH) small chain; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SPTR: A4EAF8  uncharacterized protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
YP_003800819.1	COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterProIPR001041:IPR019574:IPR001450:IPR004108:IPR 003149:IPR017900:IPR000283:IPR009016:IPR017896:IPR013352; KEGG: cbt:CLH_1644 iron hydrogenase 1; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; SPTR: A4EAF9  uncharacterized protein; TIGRFAM: hydrogenase, Fe-only; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Iron only hydrogenase large subunit, C-terminal domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Iron hydrogenase small subunit; TIGRFAM: hydrogenases, Fe-only
YP_003800820.1	COGs: COG0280 phosphotransacetylase; InterPro IPR002505:IPR012147:IPR004614; KEGG: apv:Apar_0646 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; PRIAM: phosphate acetyltransferase; SPTR: A4E7I7  uncharacterized protein; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase
YP_003800821.1	COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR006076:IPR015899:IPR016040:IPR004379; KEGG: apv:Apar_0647 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; FAD dependent oxidoreductase; PRIAM: UDP-galactopyranose mutase; SPTR: B6G9J4  uncharacterized protein; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase; FAD dependent oxidoreductase; TIGRFAM: UDP-galactopyranose mutase
YP_003800822.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: apv:Apar_0648 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C8WAE0 Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_003800823.1	COGs: COG1442 Lipopolysaccharide biosynthesis protein LPS:glycosyltransferase; InterPro IPR002495; KEGG: apv:Apar_0617 glycosyl transferase family 8; PFAM: glycosyl transferase family 8; SPTR: B9CK18 Glycosyl transferase family 8; PFAM: Glycosyl transferase family 8
YP_003800824.1	COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR005321:IPR016117; KEGG: tte:TTE1796 L-aminopeptidase/D-esterase; PFAM: peptidase S58 DmpA; SPTR: A4E7I4  uncharacterized protein; PFAM: Peptidase family S58
YP_003800825.1	COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; InterPro IPR003697; KEGG: apv:Apar_0649 maf protein; PFAM: Maf family protein; SPTR: B6GBI8  uncharacterized protein; TIGRFAM: maf protein; PFAM: Maf-like protein; TIGRFAM: MAF protein
YP_003800826.1	InterPro IPR017896:IPR001080; KEGG: apv:Apar_0650 4Fe-4S ferredoxin, iron-sulfur binding protein; SPTR: C8WAE2 4Fe-4S ferredoxin, iron-sulfur binding protein
YP_003800827.1	COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR010280:IPR016027:IPR002792:IPR001566; KEGG: apv:Apar_0652 RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; SPTR: B9CJX3 23S rRNA (Uracil-5-)-methyltransferase RumA; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA
YP_003800828.1	COGs: COG0855 Polyphosphate kinase; InterPro IPR003414; KEGG: ele:Elen_0719 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: A4E7H6 Polyphosphate kinase; PFAM: Polyphosphate kinase
YP_003800829.1	COGs: COG2235 Arginine deiminase; InterPro IPR003198:IPR003876; KEGG: ccu:Ccur_06540 arginine deiminase; PFAM: amidinotransferase; PRIAM: Arginine deiminase; SPTR: C2D7J6 Arginine deiminase; TIGRFAM: arginine deiminase; PFAM: Amidinotransferase; TIGRFAM: arginine deiminase
YP_003800830.1	COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006132:IPR006131:IPR006130:IPR002292; KEGG: ele:Elen_1948 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; SPTR: C2D7J7 Ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase
YP_003800831.1	COGs: COG0531 Amino acid transporter; InterPro IPR004841:IPR002293; KEGG: ccu:Ccur_01630 amino acid transporter; PFAM: amino acid permease-associated region; SPTR: C4F7W9  uncharacterized protein; PFAM: Amino acid permease
YP_003800832.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839:IPR015421:IPR015422:IPR015424; KEGG: shi:Shel_22340 aminotransferase; PFAM: aminotransferase class I and II; SPTR: C4F7X0  uncharacterized protein; PFAM: Aminotransferase class I and II
YP_003800833.1	COGs: COG1288 membrane protein; InterPro IPR018385; KEGG: ele:Elen_1946 C4-dicarboxylate anaerobic carrier; PFAM: C4-dicarboxylate anaerobic carrier-like; SPTR: C2D7J8 C4-dicarboxylate anaerobic carrier, arginine transporter; PFAM: C4-dicarboxylate anaerobic carrier
YP_003800834.1	COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002305:IPR014729:IPR001412:IPR002306; KEGG: apv:Apar_0653 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: C8WAE4 Tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase
YP_003800835.1	COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: sde:Sde_0543 peptidase S26A, signal peptidase I; PFAM: protein of unknown function DUF45; SPTR: Q21NC2  uncharacterized protein; PFAM: Protein of unknown function DUF45
YP_003800836.1	COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: apv:Apar_0658 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: B9CK58 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase
YP_003800837.1	COGs: COG0757 3-dehydroquinate dehydratase II; InterPro IPR018113:IPR001874:IPR001996:IPR018509; KEGG: apv:Apar_0659 dehydroquinase class II; PFAM: dehydroquinase class II; phosphotransferase system EIIB/cysteine, phosphorylation site; SPTR: C8WAF0 Dehydroquinase class II; PFAM: Dehydroquinase class II; phosphotransferase system, EIIB; TIGRFAM: 3-dehydroquinate dehydratase, type II
YP_003800838.1	COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708:IPR006151:IPR000623:IPR016040; KEGG: apv:Apar_0660 shikimate kinase; PFAM: shikimate kinase; Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; SPTR: C2D676 Shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate kinase; TIGRFAM: shikimate 5-dehydrogenase
YP_003800839.1	COGs: COG0077 Prephenate dehydratase; InterPro IPR020822:IPR001086:IPR002912:IPR002701; KEGG: drm:Dred_0783 prephenate dehydratase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; PRIAM: Chorismate mutase; SPTR: C2D675 Possible chorismate mutase; PFAM: Prephenate dehydratase; ACT domain; Chorismate mutase type II; TIGRFAM: monofunctional chorismate mutase, gram positive-type, clade 2
YP_003800840.1	COGs: COG0082 Chorismate synthase; InterPro IPR000453; KEGG: shi:Shel_10150 chorismate synthase; PFAM: chorismate synthase; PRIAM: Chorismate synthase; SPTR: B9CK62 Chorismate synthase; TIGRFAM: chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase
YP_003800841.1	COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; InterPro IPR001986:IPR016228:IPR013792:IPR006264; KEGG: apv:Apar_0663 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); SPTR: A4ECF1 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase
YP_003800842.1	COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658:IPR016303:IPR016037; KEGG: shi:Shel_10210 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; PRIAM: 3-dehydroquinate synthase; SPTR: C2D672 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase
YP_003800843.1	COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099:IPR016040; KEGG: shi:Shel_10140 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; SPTR: C2D671 Possible Arogenate dehydrogenase; PFAM: Prephenate dehydrogenase
YP_003800844.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR013785:IPR006268; KEGG: shi:Shel_10200 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; PFAM: DAHP synthetase I/KDSA; SPTR: A4ECF4  uncharacterized protein; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_003800845.1	COGs: COG0474 Cation transport ATPase; InterPro IPR008250:IPR005834:IPR018303:IPR001757; KEGG: apv:Apar_0666 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: C2D670 P-ATPase superfamily cation transporter; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_003800846.1	COGs: COG1048 Aconitase A; InterProIPR001030:IPR000573:IPR015931:IPR015932:IPR 015928; KEGG: ele:Elen_2333 aconitate hydratase 1; PFAM: aconitate hydratase domain protein; SPTR: C8WKD4 Aconitate hydratase 1; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase 1
YP_003800847.1	KEGG: apv:Apar_0667 hypothetical protein; SPTR: C2D6R0  uncharacterized protein
YP_003800848.1	COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130:IPR015891; KEGG: apv:Apar_0668 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; SPTR: C4F8J5  uncharacterized protein; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_003800849.1	InterPro IPR001440:IPR011990:IPR013026; KEGG: apv:Apar_0669 hypothetical protein; PFAM: TPR repeat-containing protein; SPTR: C8WAG0 hypothetical protein
YP_003800850.1	COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: apv:Apar_0670 cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; SPTR: C2D6Q7 Cell-shape determining protein; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family
YP_003800851.1	COGs: COG1792 Cell shape-determining protein; InterPro IPR007221:IPR005223; KEGG: apv:Apar_0671 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: B9CK74 Rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC
YP_003800852.1	InterPro IPR007227; KEGG: apv:Apar_0672 rod shape-determining protein MreD; SPTR: C8WAG3 Rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; PFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD
YP_003800853.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR012338:IPR017790; KEGG: apv:Apar_0673 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: C2D6Q4 Cell division protein FtsI/ penicillin-binding protein; TIGRFAM: penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2
YP_003800854.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: apv:Apar_0674 cell cycle protein; PFAM: cell cycle protein; SPTR: C2D6Q3 FtsW/RodA/SpoVE family cell division protein; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA
YP_003800855.1	KEGG: apv:Apar_0675 hypothetical protein; SPTR: B9CK78  uncharacterized protein
YP_003800856.1	COGs: COG0261 Ribosomal protein L21; InterPro IPR001787:IPR018258; KEGG: apv:Apar_0678 ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: C2D6Q0 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21
YP_003800857.1	COGs: COG0211 Ribosomal protein L27; InterPro IPR001684:IPR018261; KEGG: apv:Apar_0679 ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: C2D6P9 Ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27
YP_003800858.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR017871:IPR003593; KEGG: apv:Apar_0681 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A4E7L1  uncharacterized protein; PFAM: ABC transporter; Cobalt ATP-binding cassette C terminal
YP_003800859.1	COGs: COG0536 GTPase; InterProIPR006169:IPR002917:IPR015349:IPR006074:IPR 014100:IPR006073; KEGG: apv:Apar_0683 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; SPTR: C8WAH4 GTP-binding protein Obg/CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; Obg family GTPase CgtA; PFAM: GTPase of unknown function; Domain of unknown function (DUF1967); GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; Obg family GTPase CgtA, C-terminal extension; small GTP-binding protein domain
YP_003800860.1	COGs: COG0263 Glutamate 5-kinase; InterProIPR001048:IPR002478:IPR019797:IPR011529:IPR 015947:IPR001057:IPR005715; KEGG: ele:Elen_2010 glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; PRIAM: Glutamate 5-kinase; SMART: PUA domain containing protein; SPTR: C2D7A1 Glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase
YP_003800861.1	COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; InterPro IPR004820:IPR014729:IPR004821:IPR005248; KEGG: apv:Apar_0684 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: C8WAH5 Nicotinate (Nicotinamide) nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain
YP_003800862.1	COGs: COG1713 HD superfamily hydrolase involved in NAD metabolism; InterPro IPR006674:IPR003607:IPR005249:IPR006675; KEGG: ccu:Ccur_06000 conserved hypothetical protein TIGR00488; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: B9CK86  uncharacterized protein; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; TIGRFAM: conserved hypothetical protein TIGR00488; uncharacterized domain HDIG
YP_003800863.1	COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: apv:Apar_0686 iojap-like protein; PFAM: Iojap-related protein; SPTR: C8WAH7 Iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-related protein
YP_003800864.1	COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126:IPR017962:IPR017961:IPR017963; KEGG: apv:Apar_0687 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: C4F8L3  uncharacterized protein; PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family
YP_003800865.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR009082:IPR005467:IPR 004358; KEGG: ele:Elen_0372 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C2D7M6 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003800866.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011991:IPR011006; KEGG: ccu:Ccur_03590 response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C2D7M7 Two component response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003800867.1	COGs: COG0228 Ribosomal protein S16; InterPro IPR000307:IPR020592; KEGG: apv:Apar_0688 ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: C8WAH9 Ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16
YP_003800868.1	COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR018111:IPR009019:IPR004088; KEGG: apv:Apar_0689 RNA-binding protein (contains KH domain protein)-like protein; PFAM: K Homology, type 1, subgroup; SPTR: C2D7M9 Possible RNA-binding protein; PFAM: KH domain
YP_003800869.1	COGs: COG0806 RimM protein required for 16S rRNA processing; KEGG: apv:Apar_0690 16S rRNA-processing protein; SPTR: B9CK91 PRC-barrel domain protein; TIGRFAM: 16S rRNA processing protein RimM
YP_003800870.1	COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; InterPro IPR016009:IPR002649; KEGG: apv:Apar_0691 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: B9CK92 tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase
YP_003800871.1	COGs: COG0681 Signal peptidase I; InterProIPR019759:IPR019533:IPR011056:IPR019758:IPR 015927:IPR000223; KEGG: apv:Apar_0692 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region; PRIAM: Signal peptidase I; SPTR: C2D7N2 Sec family type I general secretory pathway S26 family signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S26; TIGRFAM: signal peptidase I, bacterial type
YP_003800872.1	COGs: COG0752 Glycyl-tRNA synthetase alpha subunit; InterPro IPR002310:IPR000408:IPR006194; KEGG: apv:Apar_0693 glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit; PRIAM: Glycine--tRNA ligase; SPTR: B9CK94 Glycyl-tRNA synthetase, alpha subunit; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit
YP_003800873.1	COGs: COG0751 Glycyl-tRNA synthetase beta subunit; InterPro IPR002311:IPR006194:IPR015944; KEGG: apv:Apar_0694 glycyl-tRNA synthetase, beta subunit; PFAM: glycyl-tRNA synthetase beta subunit; PRIAM: Glycine--tRNA ligase; SPTR: B9CK95 Glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit; PFAM: Glycyl-tRNA synthetase beta subunit; DALR anticodon binding domain; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit
YP_003800874.1	COGs: COG1806 conserved hypothetical protein; InterPro IPR005177; KEGG: apv:Apar_0695 hypothetical protein; PFAM: protein of unknown function DUF299; SPTR: C2D7N5  uncharacterized protein; PFAM: Domain of unknown function (DUF299)
YP_003800875.1	COGs: COG0574 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterProIPR002192:IPR008279:IPR000121:IPR013815:IPR 013816:IPR015813:IPR018274:IPR010121; KEGG: apv:Apar_0696 pyruvate, phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; PRIAM: Pyruvate, phosphate dikinase; SPTR: C2D6J6 Pyruvate, phosphate dikinase; TIGRFAM: pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase
YP_003800876.1	COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006674:IPR003607:IPR006261; KEGG: apv:Apar_0697 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: B9CKG5 Deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase
YP_003800877.1	InterPro IPR001647:IPR012287:IPR009057; KEGG: ele:Elen_2316 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: C8WKB7 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003800878.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR011527:IPR 003593:IPR017940; KEGG: ele:Elen_2315 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C8WKB6 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003800879.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR011527:IPR 003593:IPR017940; KEGG: ele:Elen_2314 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C8WKB5 ABC transporter related; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003800880.1	COGs: COG0335 Ribosomal protein L19; InterPro IPR001857; KEGG: apv:Apar_0698 ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: C8WAI9 Ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type
YP_003800881.1	COGs: COG0164 Ribonuclease HII; InterPro IPR001352:IPR012337; KEGG: apv:Apar_0699 ribonuclease H; PFAM: ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: B9CKG3 Ribonuclease; PFAM: Ribonuclease HII
YP_003800882.1	COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; InterPro IPR003509:IPR011335; KEGG: apv:Apar_0700 protein of unknown function UPF0102; PFAM: protein of unknown function UPF0102; SPTR: C8WAJ1  uncharacterized protein; PFAM: Uncharacterised protein family UPF0102
YP_003800883.1	COGs: COG0606 ATPase with chaperone activity; InterPro IPR000523:IPR020568:IPR003593:IPR004482; KEGG: apv:Apar_0701 Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; SPTR: C2D6J1 Possible ATPase; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein
YP_003800884.1	COGs: COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation; InterPro IPR002218:IPR016040:IPR004417; KEGG: apv:Apar_0703 gid protein; PFAM: glucose-inhibited division protein A; PRIAM:Methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase(FADH(2)-oxidizing); SPTR: C4F8T9  uncharacterized protein; TIGRFAM: gid protein; PFAM: Glucose inhibited division protein A; TIGRFAM: tRNA:m(5)U-54 methyltransferase
YP_003800885.1	COGs: COG4974 Site-specific recombinase XerD; InterProIPR004107:IPR002104:IPR013762:IPR011010:IPR 010998; KEGG: apv:Apar_0704 integrase family protein; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: B9CKF8 Tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family
YP_003800886.1	COGs: COG0052 Ribosomal protein S2; InterPro IPR001865:IPR018130:IPR005706; KEGG: apv:Apar_0705 ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: C2D6I7 Ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type
YP_003800887.1	COGs: COG0264 Translation elongation factor Ts; InterPro IPR000449:IPR014039:IPR009060:IPR001816; KEGG: apv:Apar_0706 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; SPTR: C2D6I6 Elongation factor EF1B; TIGRFAM: translation elongation factor Ts; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts
YP_003800888.1	COGs: COG0528 Uridylate kinase; InterPro IPR001048:IPR011817:IPR015963; KEGG: apv:Apar_0707 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: C2D6I5 UMP kinase; TIGRFAM: uridylate kinase; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase
YP_003800889.1	COGs: COG0233 Ribosome recycling factor; InterPro IPR002661; KEGG: apv:Apar_0708 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: C2D6I4 Peptide chain release factor RF4; TIGRFAM: ribosome recycling factor; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor
YP_003800890.1	COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441:IPR018520; KEGG: apv:Apar_0709 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: C8WAK0 Undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM:  undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase
YP_003800891.1	COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: apv:Apar_0710 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: C8WAK1 phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family
YP_003800892.1	COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR013512:IPR013644:IPR003821:IPR016040; KEGG: apv:Apar_0711 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: C2D6I1 1-deoxy-D-xylulose-5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_003800893.1	COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR008915:IPR001478; KEGG: apv:Apar_0712 peptidase M50; PFAM: peptidase M50; SPTR: B9CKF0  zinc metalloprotease; PFAM: Peptidase family M50; TIGRFAM: RIP metalloprotease RseP
YP_003800894.1	COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; InterPro IPR004588:IPR016425:IPR011005; KEGG: apv:Apar_0713 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; PRIAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; SPTR: C8WAK4 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
YP_003800895.1	COGs: COG0442 Prolyl-tRNA synthetase; InterProIPR002314:IPR007214:IPR004154:IPR006195:IPR 002316:IPR004500; KEGG: apv:Apar_0714 prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein; SPTR: B9CKE8 Prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: Anticodon binding domain; YbaK / prolyl-tRNA synthetases associated domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II
YP_003800896.1	KEGG: lrl:LC705_00896 drug resistance transporter, EmrB/QacA family protein, permease of the major facilitator superfamily; SPTR: C2D7H4  uncharacterized protein
YP_003800897.1	KEGG: ele:Elen_0276 hypothetical protein; SPTR: C8WK35  uncharacterized protein
YP_003800898.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR007627:IPR013249:IPR013324:IPR013325:IPR 014284; KEGG: ele:Elen_2728 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: C8WMI1 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003800899.1	KEGG: apv:Apar_0718 hypothetical protein; SPTR: C8WAK9  uncharacterized protein
YP_003800900.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR017871:IPR003593; KEGG: apv:Apar_0719 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B9CKE5 ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_003800901.1	KEGG: DOT1L; DOT1-like, histone H3 methyltransferase (S. cerevisiae) ; K11427 histone-lysine N-methyltransferase, H3 lysine-79 specific; SPTR: C2D7H8  uncharacterized protein
YP_003800902.1	COGs: COG1994 Zn-dependent protease; InterPro IPR008915; KEGG: ccu:Ccur_06780 Zn-dependent protease; PFAM: peptidase M50; SPTR: C7MN98 Zn-dependent protease; PFAM: Peptidase family M50
YP_003800903.1	COGs: COG1354 conserved hypothetical protein; InterPro IPR003768; KEGG: apv:Apar_0721 chromosome segregation and condensation protein ScpA; PFAM: chromosome segregation and condensation protein ScpA; SPTR: C8WAL2 Chromosome segregation and condensation protein ScpA; PFAM: ScpA/B protein
YP_003800904.1	COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234:IPR011991; KEGG: apv:Apar_0722 chromosome segregation and condensation protein, ScpB; PFAM: chromosome segregation and condensation protein ScpB; SPTR: C8WAL3 Chromosome segregation and condensation protein, ScpB; TIGRFAM: segregation and condensation protein B; PFAM:  transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B
YP_003800905.1	COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterProIPR002942:IPR006145:IPR018496:IPR020103:IPR 000748; KEGG: apv:Apar_0723 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: C8WAL4 Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase family
YP_003800906.1	COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: apv:Apar_0724 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SPTR: C8WAL5 phosphoglycerate mutase; PFAM: phosphoglycerate mutase family
YP_003800907.1	COGs: COG0283 Cytidylate kinase; InterPro IPR011994:IPR002123:IPR003136; KEGG: apv:Apar_0725 cytidylate kinase; PFAM: cytidylate kinase region; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: B9CKD8 Bifunctional pantoate ligase/cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: Cytidylate kinase; Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; cytidylate kinase
YP_003800908.1	COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: apv:Apar_0726 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: C2D7I4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
YP_003800909.1	COGs: COG1160 GTPase; InterPro IPR002917:IPR016484:IPR006073:IPR005225; KEGG: apv:Apar_0728 small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: C8WAL9 Small GTP-binding protein; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain
YP_003800910.1	COGs: COG0344 membrane protein; InterPro IPR003811; KEGG: apv:Apar_0729 protein of unknown function DUF205; PFAM: protein of unknown function DUF205; SPTR: B9CKD5  uncharacterized protein; PFAM: Domain of unknown function (DUF205); TIGRFAM: conserved hypothetical integral membrane protein TIGR00023
YP_003800911.1	COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterProIPR011128:IPR006109:IPR016040:IPR013328:IPR 006168:IPR008927; KEGG: apv:Apar_0730 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; PRIAM: Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); SPTR: C2D7I7 Glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YP_003800912.1	COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056:IPR013785:IPR011060; KEGG: apv:Apar_0731 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: C8WAM2 Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase
YP_003800913.1	COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterProIPR000192:IPR015421:IPR020578:IPR016454:IPR 015424; KEGG: apv:Apar_0732 aminotransferase class V; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: B9CKD2 Cysteine desulfurase; PFAM: Aminotransferase class-V
YP_003800914.1	COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: apv:Apar_0733 protein of unknown function DUF164; PFAM: protein of unknown function DUF164; SPTR: C8WAM4  uncharacterized protein; PFAM:  zinc ribbon domain
YP_003800915.1	COGs: COG0452 phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382:IPR007085:IPR005252; KEGG: apv:Apar_0734 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; PRIAM: phosphopantothenate--cysteine ligase; SPTR: C8WAM5 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic
YP_003800916.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR017871:IPR003593:IPR003439; KEGG: apv:Apar_0736 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B9CKC9 ATP binding protein of ABC transporter; PFAM: ABC transporter
YP_003800917.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR011527:IPR017871:IPR003593:IPR003439:IPR 017940:IPR001140; KEGG: apv:Apar_0737 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: A4EBA4  uncharacterized protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003800918.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR011527:IPR017871:IPR003593:IPR003439:IPR 017940:IPR001140; KEGG: apv:Apar_0738 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: A4EBA5  uncharacterized protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003800919.1	COGs: COG0579 dehydrogenase; InterPro IPR006076:IPR007419; KEGG: bhy:BHWA1_01959 predicted dehydrogenase; PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; SPTR: C0FKQ4  uncharacterized protein; PFAM: BFD-like [2Fe-2S] binding domain; FAD dependent oxidoreductase
YP_003800920.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR013027; KEGG: ere:EUBREC_2587 sarcosine oxidase alpha subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C0B590  uncharacterized protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003800921.1	COGs: COG3862 Uncharacterized protein with conserved CXXC pairs; InterPro IPR012460; KEGG: cno:NT01CX_0610 hypothetical protein; PFAM: protein of unknown function DUF1667; SPTR: C4GDB7  uncharacterized protein; PFAM: Protein of unknown function (DUF1667)
YP_003800922.1	COGs: COG3695 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048:IPR001497:IPR011991; KEGG: ccu:Ccur_10170 O-6-methylguanine DNA methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: B9CKC3 Methylated-dna--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase
YP_003800923.1	COGs: COG1476 transcriptional regulator protein; InterPro IPR010982:IPR001387; KEGG: cac:CAC3324 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Q97DZ6 Predicted transcriptional regulator; PFAM: Helix-turn-helix
YP_003800924.1	KEGG: fma:FMG_0147 hypothetical protein; SPTR: C2KN45  uncharacterized protein
YP_003800925.1	COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: lba:Lebu_0609 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: B9CNZ4 Methyltransferase; PFAM: Methyltransferase domain
YP_003800926.1	COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: apv:Apar_0749 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: B9CKA6  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_003800927.1	COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; InterPro IPR012338:IPR018044:IPR001967; KEGG: apv:Apar_0750 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; SPTR: B9CKA5 D-alanyl-D-alanine carboxypeptidase; PFAM: D-alanyl-D-alanine carboxypeptidase
YP_003800928.1	COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); InterPro IPR006222; KEGG: apv:Apar_0751 hypothetical protein; PFAM: glycine cleavage T protein (aminomethyl transferase); SPTR: C8WAP2  uncharacterized protein; PFAM: Aminomethyltransferase folate-binding domain
YP_003800929.1	COGs: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; InterPro IPR015424:IPR004839:IPR015421; KEGG: cbe:Cbei_1781 aminotransferase, class I and II; PFAM: aminotransferase class I and II; SPTR: B9YAT1  uncharacterized protein; PFAM: Aminotransferase class I and II
YP_003800930.1	COGs: COG0251  translation initiation inhibitor yjgF family; InterPro IPR013813:IPR019897:IPR006056:IPR006175; KEGG: apv:Apar_0752 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: B9CKA3  endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP
YP_003800931.1	COGs: COG1716 FOG: FHA domain; InterPro IPR008984:IPR000253; KEGG: apv:Apar_0753 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: C2D6H2 FHA domain protein; PFAM: FHA domain
YP_003800932.1	InterPro IPR009061:IPR000551; KEGG: apv:Apar_0754 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: B9CKA1 Regulatory protein, MerR; PFAM: MerR family regulatory protein
YP_003800933.1	COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; InterPro IPR005764:IPR000836; KEGG: apv:Apar_0755 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: C2D6H0 Adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase
YP_003800934.1	COGs: COG3883 conserved hypothetical protein; InterPro IPR000064; KEGG: apv:Apar_0756 NLP/P60 protein; PFAM: NLP/P60 protein; SPTR: B9CK99 NlpC/P60 family protein; PFAM: NlpC/P60 family
YP_003800935.1	COGs: COG0038 Chloride channel protein EriC; InterPro IPR014743:IPR016040:IPR001807:IPR006037; KEGG: apv:Apar_0757 chloride channel core; PFAM: Cl- channel voltage-gated family protein; TrkA-C domain protein; SPTR: B9CK98 Chloride ion channel protein; PFAM: Voltage gated chloride channel; TrkA-C domain
YP_003800936.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR008255:IPR000103:IPR013027; KEGG: apv:Apar_0765 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: B9CK97 Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase
YP_003800937.1	COGs: COG2252 Permease; InterPro IPR006043; KEGG: apv:Apar_0766 xanthine/uracil/vitamin C permease; PFAM: Xanthine/uracil/vitamin C permease; SPTR: C8WAQ7 Xanthine/uracil/vitamin C permease; PFAM: Permease family
YP_003800938.1	COGs: COG0756 dUTPase; InterPro IPR008181:IPR008180; KEGG: apv:Apar_0767 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; PRIAM: dUTP diphosphatase; SPTR: B9CKG8 Deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)
YP_003800939.1	COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains; InterPro IPR003796:IPR005144; KEGG: apv:Apar_0768 ATP-cone domain protein; PFAM: ATP-cone domain protein; SPTR: B9CKG9 Transcriptional regulator NrdR; PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR
YP_003800940.1	InterPro IPR002482:IPR018392; KEGG: apv:Apar_0769 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: B9CKH0 LysM domain protein; PFAM: LysM domain
YP_003800941.1	COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterProIPR015927:IPR006200:IPR006197:IPR006199:IPR 019759:IPR011991:IPR011056; KEGG: apv:Apar_0770 SOS-response transcriptional repressor, LexA; PFAM: LexA DNA-binding domain protein; Peptidase S24/S26A/S26B, conserved region; PRIAM: Repressor lexA; SPTR: C8WAR1 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA binding domain; Peptidase S24-like; TIGRFAM: SOS regulatory protein LexA
YP_003800942.1	COGs: COG3503 membrane protein; InterPro IPR017948:IPR012429; KEGG: apv:Apar_0771 protein of unknown function DUF1624; PFAM: protein of unknown function DUF1624; SPTR: C8WAR2  uncharacterized protein; PFAM: Protein of unknown function (DUF1624)
YP_003800943.1	COGs: COG2262 GTPase; InterPro IPR016496:IPR005225:IPR006073:IPR002917; KEGG: apv:Apar_0772 GTP-binding protein HflX; PFAM: GTP-binding protein HSR1-related; SPTR: B9CKH3 GTP-binding protein HflX; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain
YP_003800944.1	COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022:IPR002627; KEGG: apv:Apar_0773 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: B9CKH4 tRNA Delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA)
YP_003800945.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR005839:IPR006463:IPR006638:IPR002792:IPR 013848:IPR007197:IPR013785; KEGG: apv:Apar_0774 RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: C2D6F7 tRNA 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family
YP_003800946.1	COGs: COG2359 conserved hypothetical protein; InterPro IPR007347; KEGG: apv:Apar_0775 stage V sporulation protein S; PFAM: Stage V sporulation protein S; SPTR: B6GBU2  uncharacterized protein; PFAM: Stage V sporulation protein S (SpoVS)
YP_003800947.1	InterPro IPR003594; KEGG: apv:Apar_0776 ATP-binding region ATPase domain protein; PFAM: ATP-binding region ATPase domain protein; SPTR: B9CKH7  uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003800948.1	COGs: COG1418 HD superfamily hydrolase; InterProIPR017705:IPR006675:IPR004087:IPR003607:IPR 004088:IPR018111:IPR006674; KEGG: apv:Apar_0777 RNA binding metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; PRIAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; SPTR: B9CKH8  uncharacterized protein; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG
YP_003800949.1	COGs: COG2137 conserved hypothetical protein; InterPro IPR003783; KEGG: apv:Apar_0778 regulatory protein RecX; PFAM: regulatory protein RecX; SPTR: C8W6W7 Regulatory protein RecX; PFAM: RecX family
YP_003800950.1	COGs: COG0468 RecA/RadA recombinase; InterProIPR020584:IPR013765:IPR003593:IPR001553:IPR 020588:IPR020587; KEGG: apv:Apar_0779 RecA protein; PFAM: RecA domain protein; SMART: AAA ATPase; SPTR: C2D6E5 Protein recA; TIGRFAM: recA protein; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA
YP_003800951.1	COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR008136; KEGG: apv:Apar_0781 CinA domain protein; PFAM: CinA domain protein; SPTR: C8W6X0 CinA domain protein; PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain
YP_003800952.1	COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462:IPR004570; KEGG: apv:Apar_0782 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: B9CKI2 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_003800953.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR005839:IPR005840:IPR006638:IPR002792:IPR 013848:IPR007197:IPR013785; KEGG: apv:Apar_0783 MiaB-like tRNA modifying enzyme YliG; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: B9CKI3  uncharacterized protein; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family
YP_003800954.1	COGs: COG1666 conserved hypothetical protein; InterPro IPR007551; KEGG: apv:Apar_0784 protein of unknown function DUF520; PFAM: protein of unknown function DUF520; SPTR: C2D6E1 Nucleotide-binding protein; PFAM: Protein of unknown function (DUF520)
YP_003800955.1	KEGG: apv:Apar_0785 transcriptional regulator, XRE family; SPTR: C8W6X4 Transcriptional regulator, XRE family
YP_003800956.1	COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR003593:IPR002543:IPR018541; KEGG: apv:Apar_0786 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; SPTR: C2D6D9 Stage III sporulation DNA translocase E; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family
YP_003800957.1	COGs: COG0595 hydrolase of the metallo-beta-lactamase superfamily; InterPro IPR001587:IPR011108; KEGG: apv:Apar_0787 beta-lactamase domain protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: C8W6X6 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein
YP_003800958.1	COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); InterProIPR020568:IPR015847:IPR016027:IPR015848:IPR 012162:IPR004087:IPR004088:IPR003029:IPR001247:IPR018111:I PR012340; KEGG: apv:Apar_0788 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; RNA binding S1 domain protein; PRIAM: Polyribonucleotide nucleotidyltransferase; SMART: KH domain protein; SPTR: B9CKI8 Polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; Polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase
YP_003800959.1	COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR009068:IPR000589:IPR005290; KEGG: apv:Apar_0789 ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: C2D6D6 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle
YP_003800960.1	COGs: COG1381 Recombinational DNA repair protein (RecF pathway); InterPro IPR003717; KEGG: apv:Apar_0790 DNA repair protein RecO; PFAM: Recombination protein O RecO; SPTR: B9CKJ0 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO
YP_003800961.1	COGs: COG1159 GTPase; InterProIPR009019:IPR005225:IPR005662:IPR006073:IPR 004044:IPR002917:IPR015946; KEGG: apv:Apar_0791 GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; SPTR: C8W6Y0 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain
YP_003800962.1	COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: apv:Apar_0792 diacylglycerol kinase; PFAM: diacylglycerol kinase; SPTR: C2D6D2 Diacylglycerol kinase; PFAM: Prokaryotic diacylglycerol kinase
YP_003800963.1	COGs: COG0319 metal-dependent hydrolase; InterPro IPR020549:IPR002036; KEGG: apv:Apar_0793 protein of unknown function UPF0054; PFAM: protein of unknown function UPF0054; SPTR: B9CKJ3  metalloprotease; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: conserved hypothetical protein TIGR00043
YP_003800964.1	COGs: COG1702 phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003593:IPR003714; KEGG: apv:Apar_0794 PhoH family protein; PFAM: PhoH family protein; SMART: AAA ATPase; SPTR: B9CKJ4 PhoH family protein; PFAM: PhoH-like protein
YP_003800965.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR005839:IPR006638:IPR013848:IPR007197:IPR 013785; KEGG: apv:Apar_0795 RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; SPTR: C2D6C9 Possible 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: RNA modification enzyme, MiaB family
YP_003800966.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR001623:IPR001305:IPR008971:IPR018253:IPR 003095:IPR002939; KEGG: apv:Apar_0796 chaperone protein DnaJ; PFAM: heat shock protein DnaJ domain protein; DnaJ central domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: B9CKJ6 Chaperone protein dnaJ; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ
YP_003800967.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR001623:IPR001305:IPR008971:IPR018253:IPR 003095; KEGG: apv:Apar_0797 heat shock protein DnaJ domain protein; PFAM: heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: B9CKJ7 Chaperone protein dnaJ; PFAM: DnaJ domain; DnaJ central domain (4 repeats)
YP_003800968.1	COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR010723:IPR013785; KEGG: apv:Apar_0799 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; PRIAM: Coproporphyrinogen dehydrogenase; SMART: Elongator protein 3/MiaB/NifB; SPTR: B9CKJ8 Coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM:  oxygen-independent coproporphyrinogen III oxidase
YP_003800969.1	COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269:IPR013785; KEGG: apv:Apar_0800 TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; SPTR: C8W6Y9 TIM-barrel protein, nifR3 family; PFAM: Dihydrouridine synthase (Dus); TIGRFAM:  TIM-barrel protein, nifR3 family
YP_003800970.1	COGs: COG0481 Membrane GTPase LepA; InterProIPR009022:IPR000795:IPR005225:IPR006297:IPR 000640:IPR013842; KEGG: apv:Apar_0801 GTP-binding protein LepA; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor G domain protein; SPTR: A4EC61  uncharacterized protein; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain
YP_003800971.1	InterPro IPR002583; KEGG: apv:Apar_0802 ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: B9CKK1 Ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20
YP_003800972.1	COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR008921:IPR005790:IPR010372; KEGG: apv:Apar_0803 DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; SPTR: C8W6Z2 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit
YP_003800973.1	COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR004797:IPR004477; KEGG: apv:Apar_0804 ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; SPTR: B9CKK3 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2
YP_003800974.1	COGs: COG1555 DNA uptake protein and related DNA-binding protein; InterPro IPR004509:IPR003583:IPR019554; KEGG: apv:Apar_0805 competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain; SMART: Helix-hairpin-helix DNA-binding class 1; SPTR: B9CKK4 Competence protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Helix-hairpin-helix motif; SLBB domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; comEA protein
YP_003800975.1	COGs: COG0301 Thiamine biosynthesis ATP pyrophosphatase; InterPro IPR003720:IPR004114:IPR020536; KEGG: apv:Apar_0806 thiamine biosynthesis/tRNA modification protein ThiI; PFAM: Thiamine biosynthesis protein-like; THUMP domain protein; SPTR: C8W6Z5 Thiamine biosynthesis/tRNA modification protein ThiI; TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: Thiamine biosynthesis protein (ThiI); THUMP domain; TIGRFAM: thiazole biosynthesis/tRNA modification protein ThiI
YP_003800976.1	InterPro IPR006110; KEGG: apv:Apar_0807 hypothetical protein; PFAM: RNA polymerase Rpb6; SPTR: B9CKK6  dihydroflavonol 4-reductase; TIGRFAM: DNA-directed RNA polymerase, omega subunit
YP_003800977.1	COGs: COG0194 Guanylate kinase; InterPro IPR020590:IPR017665:IPR008145:IPR008144; KEGG: apv:Apar_0808 guanylate kinase; PFAM: guanylate kinase; PRIAM: Guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; SPTR: B9CKK7 Guanylate kinase; TIGRFAM: guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase
YP_003800978.1	KEGG: apv:Apar_0809 hypothetical protein; SPTR: B6GCL2  uncharacterized protein
YP_003800979.1	COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR011060:IPR014732:IPR001754:IPR013785; KEGG: apv:Apar_0810 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: C8W6Z9 Orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 1
YP_003800980.1	COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR012135:IPR005720:IPR013785; KEGG: apv:Apar_0811 dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase; SPTR: B9CKL0 Dihydroorotate dehydrogenase, catalytic subunit; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein
YP_003800981.1	COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterProIPR017938:IPR012165:IPR001221:IPR017927:IPR 008333:IPR001433:IPR019480; KEGG: apv:Apar_0812 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; SPTR: B9CKL1 Dihydroorotate dehydrogenase, electron transfer subunit; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain
YP_003800982.1	COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR011059:IPR002195:IPR004722:IPR006680; KEGG: apv:Apar_0813 dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; SPTR: B9CKL2 Dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type
YP_003800983.1	COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; InterPro IPR006130:IPR002082:IPR006132:IPR006131; KEGG: apv:Apar_0814 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; PRIAM: Aspartate carbamoyltransferase; SPTR: C2D6B0 Aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase
YP_003800984.1	COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: shi:Shel_11840 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: B9CKL4 Bifunctional protein PyrR; PFAM: phosphoribosyl transferase domain
YP_003800985.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: ele:Elen_2037 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C2D6A6  uncharacterized protein; PFAM: Glycosyl transferase family 2
YP_003800986.1	COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: apv:Apar_0816 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8W705 ABC transporter related; PFAM: ABC transporter
YP_003800987.1	COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR000412:IPR013525; KEGG: apv:Apar_0602 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: C2D6A4 ABC-2 type transporter; PFAM: ABC-2 type transporter
YP_003800988.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR013325:IPR013324:IPR000943:IPR014284:IPR 012760:IPR009042:IPR007627:IPR007624:IPR007630:IPR011991; KEGG: apv:Apar_0824 RNA polymerase, sigma 70 subunit, RpoD subfamily; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; SPTR: C2D7B9 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain
YP_003800989.1	COGs: COG0358 DNA primase; InterProIPR006295:IPR002694:IPR006154:IPR013264:IPR 006171:IPR019475; KEGG: apv:Apar_0825 DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase, DnaB-helicase binding domain; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; SPTR: B9CNX9 DNA primase; TIGRFAM: DNA primase; PFAM: Toprim domain; CHC2 zinc finger; DNA primase catalytic core, N-terminal domain; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core
YP_003800990.1	COGs: COG0196 FAD synthase; InterPro IPR015865:IPR002606:IPR015864:IPR014729; KEGG: apv:Apar_0826 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; SPTR: C8W715 Riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase
YP_003800991.1	COGs: COG0130 Pseudouridine synthase; InterPro IPR020103:IPR014780:IPR002501; KEGG: apv:Apar_0827 tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; SPTR: B6GCN3  uncharacterized protein; TIGRFAM: tRNA pseudouridine synthase B; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase
YP_003800992.1	COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: apv:Apar_0828 phosphoesterase RecJ domain protein; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: B9CNY2 phosphoesterase, RecJ domain protein; PFAM: DHH family; DHHA1 domain
YP_003800993.1	COGs: COG0858 Ribosome-binding factor A; InterPro IPR000238:IPR020053:IPR015946; KEGG: apv:Apar_0829 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: C8W718 Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A
YP_003800994.1	COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR009000:IPR000178:IPR005225:IPR006847:IPR 000795:IPR004161; KEGG: apv:Apar_0830 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; elongation factor Tu domain 2 protein; SPTR: C8W719 Translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2
YP_003800995.1	COGs: COG0195 Transcription elongation factor; InterProIPR009019:IPR013735:IPR016027:IPR010213:IPR 004088:IPR003029:IPR012340:IPR015946; KEGG: apv:Apar_0831 NusA antitermination factor; PFAM: NusA domain protein; SPTR: C8W720 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA
YP_003800996.1	InterPro IPR003728; KEGG: apv:Apar_0832 protein of unknown function DUF150; PFAM: protein of unknown function DUF150; SPTR: C2D7B1 Protein of hypothetical function DUF150; PFAM: Uncharacterised BCR, YhbC family COG0779
YP_003800997.1	COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR017900:IPR017896:IPR019575:IPR001450; KEGG: aoe:Clos_0276 NADH dehydrogenase (quinone); PFAM: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C5EG41 4Fe-4S ferredoxin
YP_003800998.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR001041:IPR009051:IPR017900:IPR000759:IPR 017896:IPR019574:IPR001450:IPR013027:IPR012285; KEGG: cbe:Cbei_3781 ferredoxin; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C5EG42 Ferredoxin; PFAM: Pyridine nucleotide-disulphide oxidoreductase; 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
YP_003800999.1	COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953; KEGG: cbe:Cbei_3779 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: C5EG43 Twin-arginine translocation pathway signal; PFAM: FAD binding domain
YP_003801000.1	COGs: COG0655 Multimeric flavodoxin WrbA; KEGG: cdf:CD3637 hypothetical protein; SPTR: C6PUJ0 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase
YP_003801001.1	KEGG: nth:Nther_1023  transcriptional regulator, PucR family; SPTR: C5EG46 Predicted protein
YP_003801002.1	COGs: COG2936 acyl esterase; InterPro IPR008979:IPR005674:IPR000383:IPR013736; KEGG: shi:Shel_11190  hydrolase, CocE/NonD family; PFAM: X-Pro dipeptidyl-peptidase domain protein; peptidase S15; SPTR: C7N5G9  hydrolase, CocE/NonD family; TIGRFAM: hydrolase CocE/NonD family protein; PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM:  hydrolase, CocE/NonD family
YP_003801003.1	InterPro IPR016196:IPR011701; KEGG: rpc:RPC_0640 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Q21BM4 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003801004.1	InterPro IPR009081; KEGG: shi:Shel_11200 hypothetical protein; SPTR: C7N5H0  uncharacterized protein; PFAM: phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_003801005.1	COGs: COG0280 phosphotransacetylase; InterPro IPR012147:IPR002505; KEGG: shi:Shel_11220 phosphotransacetylase; PFAM: phosphate acetyl/butaryl transferase; SPTR: C5EG35 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase
YP_003801006.1	KEGG: similar to adenylate cyclase 9 (predicted) ; K08049 adenylate cyclase 9; SPTR: C6SNY0  inner membrane protein
YP_003801007.1	COGs: COG3426 Butyrate kinase; InterPro IPR000890:IPR011245; KEGG: cdl:CDR20291_0112 butyrate kinase; PFAM: acetate and butyrate kinase; SPTR: C5EHB6 Butyrate kinase; TIGRFAM: butyrate kinase; PFAM: Acetokinase family; TIGRFAM: butyrate kinase
YP_003801008.1	InterPro IPR016196:IPR011701; KEGG: apv:Apar_0509 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: B9CKS6 Transporter, major facilitator family; PFAM: Major Facilitator Superfamily
YP_003801009.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: tpt:Tpet_1485 beta-lactamase domain-containing protein; SPTR: A5IMS0 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003801010.1	KEGG: cti:RALTA_B1045  hybrid sensor histidine kinase; SPTR: B3R9S7 Sensor protein
YP_003801011.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002198:IPR002347; KEGG: apv:Apar_0283 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: B9CMJ6 Acetoacetyl-CoA reductase; PFAM: short chain dehydrogenase
YP_003801012.1	InterPro IPR006162:IPR004684; KEGG: apv:Apar_0284 2-keto-3-deoxygluconate permease; PFAM: 2-keto-3-deoxygluconate permease; SPTR: B9CMJ7 2-keto-3-deoxygluconate permease; PFAM: 2-keto-3-deoxygluconate permease
YP_003801013.1	COGs: COG0495 Leucyl-tRNA synthetase; InterProIPR009008:IPR009080:IPR001412:IPR002302:IPR 002300:IPR013155:IPR014729; KEGG: apv:Apar_0833 leucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; SPTR: C8W722 Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family
YP_003801014.1	COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; InterPro IPR012338:IPR018044:IPR001967; KEGG: apr:Apre_0139 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; SPTR: C2BF78 D-alanyl-D-alanine carboxypeptidase; PFAM: D-alanyl-D-alanine carboxypeptidase
YP_003801015.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR001867:IPR011991; KEGG: ele:Elen_1631 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C8WHK8 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003801016.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterProIPR003594:IPR009082:IPR003661:IPR004358:IPR 005467; KEGG: shi:Shel_05740 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C7N3P2 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003801017.1	InterPro IPR016196:IPR011701; KEGG: nth:Nther_2073 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: B2A749 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003801018.1	KEGG: dol:Dole_1639 TPR repeat-containing protein; SPTR: C4G905  uncharacterized protein
YP_003801019.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterProIPR001989:IPR011352:IPR012839:IPR017896:IPR 007197; KEGG: cdl:CDR20291_0154 4-hydroxyphenylacetate decarboxylase, activating subunit; PFAM: Radical SAM domain protein; PRIAM: [Formate-C-acetyltransferase]-activating enzyme; SPTR: C0CSM1  uncharacterized protein; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM superfamily; TIGRFAM: glycyl-radical enzyme activating protein family
YP_003801020.1	KEGG: cdl:CDR20291_0153 4-hydroxyphenylacetate decarboxylase, regulatory subunit; SPTR: C0CSM2  uncharacterized protein
YP_003801021.1	COGs: COG1882 Pyruvate-formate lyase; InterPro IPR001412:IPR001150:IPR004184; KEGG: cdf:CD0153 4-hydroxyphenylacetate decarboxylase, catalytic subunit; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; PRIAM: Formate C-acetyltransferase; SPTR: C0CSM3  uncharacterized protein; PFAM: Glycine radical; Pyruvate formate lyase
YP_003801022.1	InterPro IPR019734:IPR001440:IPR011990; KEGG: paa:Paes_2380 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: A8YKI2 Genome sequencing data, contig C324
YP_003801023.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR018368:IPR001270:IPR003593:IPR004176:IPR 003959:IPR013093:IPR019489; KEGG: cyt:cce_1001 ATP-dependent Clp protease, regulatory subunit; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: C2BSH3 ATPase with chaperone activity, ATP-binding subunit; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA)
YP_003801024.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR018490:IPR000595:IPR014710; KEGG: cdl:CDR20291_0168  cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: C0CR54  uncharacterized protein; PFAM: Cyclic nucleotide-binding domain
YP_003801025.1	COGs: COG3853 Uncharacterized protein involved in tellurite resistance; InterPro IPR008863; KEGG: shi:Shel_17530 uncharacterized protein involved in tellurite resistance; PFAM: toxic anion resistance family protein; SPTR: C7N787 Uncharacterized protein involved in tellurite resistance; PFAM: Toxic anion resistance protein (TelA)
YP_003801026.1	KEGG: shi:Shel_17540 hypothetical protein; SPTR: C7N788  uncharacterized protein
YP_003801027.1	COGs: COG0516 IMP dehydrogenase/GMP reductase; InterProIPR015875:IPR018529:IPR000644:IPR001093:IPR 013785; KEGG: apv:Apar_0834 IMP dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; PRIAM: IMP dehydrogenase; SPTR: C2D7A9 IMP dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase
YP_003801028.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: apv:Apar_0835 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C2D7A8 Glycosyltransferase; PFAM: Glycosyl transferase family 2
YP_003801029.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterProIPR020103:IPR006224:IPR006225:IPR002942:IPR 006145; KEGG: apv:Apar_0839 pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: B9CNZ0 Pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family
YP_003801030.1	COGs: COG0597 Lipoprotein signal peptidase; InterPro IPR001872; KEGG: apv:Apar_0840 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; SPTR: C8W729 Lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase
YP_003801031.1	COGs: COG0060 Isoleucyl-tRNA synthetase; InterProIPR009008:IPR009080:IPR001412:IPR005479:IPR 002301:IPR015905:IPR002300:IPR013155:IPR014729; KEGG: apv:Apar_0841 isoleucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; SPTR: C8W730 Isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase
YP_003801032.1	COGs: COG3855 conserved hypothetical protein; InterPro IPR009164; KEGG: ere:EUBREC_0921 fructose-1,6-bisphosphatase; PFAM: fructose-16-bisphosphatase; SPTR: C4FA98  uncharacterized protein; PFAM: Firmicute fructose-1,6-bisphosphatase
YP_003801033.1	COGs: COG0465 ATP-dependent Zn protease; InterProIPR003960:IPR005936:IPR003593:IPR011546:IPR 003959:IPR000642; KEGG: apv:Apar_0842 ATP-dependent metalloprotease FtsH; PFAM: AAA ATPase central domain protein; peptidase M41 FtsH extracellular; peptidase M41; PRIAM: Microtubule-severing ATPase; SMART: AAA ATPase; SPTR: C2D7J5 M41 family FtsH endopeptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH
YP_003801034.1	COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: dsy:DSY4380 hypothetical protein; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: C4F8U9  uncharacterized protein; PFAM: SpoU rRNA Methylase family
YP_003801035.1	InterPro IPR005490; KEGG: ele:Elen_1958 ErfK/YbiS/YcfS/YnhG family protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: C8WII2 ErfK/YbiS/YcfS/YnhG family protein; PFAM:  peptidoglycan binding domain; L,D-transpeptidase catalytic domain
YP_003801036.1	COGs: COG0541 Signal recognition particle GTPase; InterProIPR004125:IPR013822:IPR000897:IPR004780:IPR 003593; KEGG: apv:Apar_0849 signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase; SPTR: B9CK14 Signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein
YP_003801037.1	COGs: COG0552 Signal recognition particle GTPase; InterPro IPR013822:IPR004390:IPR003593:IPR000897; KEGG: apv:Apar_0850 signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; SPTR: C8W739 Signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY
YP_003801038.1	COGs: COG1196 Chromosome segregation ATPase; InterPro IPR010935:IPR011890:IPR003395; KEGG: apv:Apar_0851 chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; SPTR: B9CK12 Chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type
YP_003801039.1	COGs: COG0571 dsRNA-specific ribonuclease; InterPro IPR000999:IPR011907:IPR001159:IPR014720; KEGG: apv:Apar_0852 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; PRIAM: Ribonuclease III; SMART: ribonuclease III; double-stranded RNA binding domain protein; SPTR: C8W741 Ribonuclease III; TIGRFAM: ribonuclease III; PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial
YP_003801040.1	InterPro IPR009081:IPR006163; KEGG: apv:Apar_0853 phosphopantetheine-binding; PFAM: phosphopantetheine-binding; SPTR: C2D684 Acyl carrier protein; PFAM: phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_003801041.1	COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; InterPro IPR012281:IPR003664; KEGG: apv:Apar_0854 fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; SPTR: C8W743 Fatty acid/phospholipid synthesis protein PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX
YP_003801042.1	InterPro IPR002677; KEGG: apv:Apar_0855 ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: C8W744 Ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32
YP_003801043.1	KEGG: similar to Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b; K06689 ubiquitin-conjugating enzyme E2 D/E; SPTR: B2HS53 PE-PGRS family protein
YP_003801044.1	KEGG: hypothetical protein; SPTR: D0CRI8  uncharacterized protein
YP_003801045.1	KEGG: mav:MAV_2301 anthranilate phosphoribosyltransferase; SPTR: A0QF16 Anthranilate phosphoribosyltransferase
YP_003801046.1	KEGG: bte:BTH_II0267 RhsD protein; SPTR: Q2T8N0 RhsD protein
YP_003801047.1	KEGG: ade:Adeh_3330 hypothetical protein; SPTR: Q2IET7  uncharacterized protein
YP_003801048.1	COGs: COG3209 Rhs family protein; InterPro IPR006530; KEGG: mba:Mbar_A3399 hypothetical protein; SPTR: Q466C0  uncharacterized protein; TIGRFAM: YD repeat protein; PFAM: RHS Repeat; TIGRFAM: YD repeat (two copies)
YP_003801049.1	KEGG: golgi SNARE 12 protein; K08495 golgi SNAP receptor complex member 1; SPTR: C0WL80 Possible NLP/P60 protein
YP_003801050.1	COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: apv:Apar_0856 protein of unknown function DUF177; PFAM: protein of unknown function DUF177; SPTR: C8W745  uncharacterized protein; PFAM: Uncharacterized ACR, COG1399
YP_003801051.1	KEGG: apv:Apar_0857 hypothetical protein; SPTR: C8W746  uncharacterized protein
YP_003801052.1	COGs: COG0669 phosphopantetheine adenylyltransferase; InterPro IPR004821:IPR001980:IPR004820:IPR014729; KEGG: apv:Apar_0858 pantetheine-phosphate adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: B9CK05 Pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain
YP_003801053.1	COGs: COG0742 N6-adenine-specific methylase; InterPro IPR002052:IPR004398:IPR016065; KEGG: apv:Apar_0859 methyltransferase; PFAM: Protein of unknown function methylase SPTR: A4E6T6  uncharacterized protein; TIGRFAM: methyltransferase; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family
YP_003801054.1	COGs: COG1200 RecG-like helicase; InterProIPR016027:IPR014001:IPR001650:IPR014021:IPR 004365:IPR011545; KEGG: apv:Apar_0860 helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: B9CK03 ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; OB-fold nucleic acid binding domain; TIGRFAM: ATP-dependent DNA helicase RecG
YP_003801055.1	COGs: COG1461 kinase related to dihydroxyacetone kinase; InterPro IPR004007:IPR019986; KEGG: apv:Apar_0861 Dak phosphatase; PFAM: Dak phosphatase; SPTR: C8W750 Dak phosphatase; TIGRFAM: DAK2 domain fusion protein YloV; PFAM: DAK2 domain; TIGRFAM: DAK2 domain fusion protein YloV
YP_003801056.1	COGs: COG1302 conserved hypothetical protein; InterPro IPR005531; KEGG: apv:Apar_0862 protein of unknown function DUF322; PFAM: protein of unknown function DUF322; SPTR: B9CK27  uncharacterized protein; PFAM: Protein of unknown function (DUF322)
YP_003801057.1	InterPro IPR001383; KEGG: apv:Apar_0863 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: C2D8V6 Possible ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28
YP_003801058.1	COGs: COG1564 Thiamine pyrophosphokinase; InterPro IPR007371:IPR006402:IPR006282:IPR005834; KEGG: apv:Apar_0864 thiamine pyrophosphokinase; PFAM: Haloacid dehalogenase domain protein hydrolase; Thiamin pyrophosphokinase catalytic region; SPTR: C2D8V5  uncharacterized protein; TIGRFAM: thiamine pyrophosphokinase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Thiamin pyrophosphokinase, vitamin B1 binding domain; Thiamin pyrophosphokinase, catalytic domain; haloacid dehalogenase-like hydrolase; TIGRFAM: thiamine pyrophosphokinase; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_003801059.1	COGs: COG2331 conserved hypothetical protein; InterPro IPR013429; KEGG: apv:Apar_0865 regulatory protein, FmdB family; PFAM:  regulatory protein FmdB; SPTR: B9CK42 Regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM:  regulatory protein, FmdB family
YP_003801060.1	COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR006027:IPR001678; KEGG: apv:Apar_0866 NusB/RsmB/TIM44; PFAM: NusB/RsmB/TIM44; Fmu (Sun) domain protein; SPTR: B9CK37 NusB/NOL1/NOP2/sun family protein; PFAM: NOL1/NOP2/sun family; NusB family
YP_003801061.1	COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376:IPR011034:IPR005794:IPR005793; KEGG: apv:Apar_0867 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; PRIAM: Methionyl-tRNA formyltransferase; SPTR: B9CK33 Methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase
YP_003801062.1	COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: apv:Apar_0868 peptide deformylase; PFAM: formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: B9CK32 Peptide deformylase; TIGRFAM: peptide deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase
YP_003801063.1	COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterProIPR005259:IPR014001:IPR001650:IPR014021:IPR 011545; KEGG: apv:Apar_0869 primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C8W758 Primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N'
YP_003801064.1	COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: apv:Apar_0501 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: C8W9Z4 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase
YP_003801065.1	InterPro IPR009057:IPR011075:IPR001647:IPR012287; KEGG: apv:Apar_0500 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B9CKT3 Transcriptional regulator, TetR family protein; PFAM: Bacterial regulatory proteins, tetR family
YP_003801066.1	COGs: COG1511 membrane protein; InterPro IPR017500:IPR017501:IPR013525; KEGG: apv:Apar_0499 YhgE/Pip N-terminal domain protein; PFAM: ABC-2 type transporter; SPTR: B9CKT4 YhgE/Pip N-domain protein; TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; PFAM: ABC-2 type transporter; TIGRFAM: YhgE/Pip C-terminal domain; YhgE/Pip N-terminal domain
YP_003801067.1	COGs: COG1511 membrane protein; InterPro IPR017500:IPR017501:IPR013525; KEGG: apv:Apar_0498 YhgE/Pip C-terminal domain protein; PFAM: ABC-2 type transporter; SPTR: B6G7T6  uncharacterized protein; TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; TIGRFAM: YhgE/Pip C-terminal domain; YhgE/Pip N-terminal domain
YP_003801068.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterProIPR008925:IPR001412:IPR004527:IPR020060:IPR 020058:IPR014729:IPR020061:IPR020751; KEGG: apv:Apar_0504 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: C8W9Z7 Glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family
YP_003801069.1	KEGG: lga:LGAS_0394 hypothetical protein; SPTR: C2GU37  uncharacterized protein
YP_003801070.1	InterPro IPR007337; KEGG: aba:Acid345_2090 RelB antitoxin; PFAM: RelB antitoxin; SPTR: C2GU38  uncharacterized protein; TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; TIGRFAM: addiction module antitoxin, RelB/DinJ family
YP_003801071.1	COGs: COG1760 L-serine deaminase; InterProIPR004643:IPR004642:IPR005131:IPR002912:IPR 005130; KEGG: apv:Apar_0503 L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; amino acid-binding ACT domain protein; PRIAM: L-serine ammonia-lyase; SPTR: C2D8U6 L-serine ammonia-lyase; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: ACT domain; Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form; L-serine dehydratase, iron-sulfur-dependent, beta subunit; L-serine dehydratase, iron-sulfur-dependent, alpha subunit
YP_003801072.1	InterPro IPR005242; KEGG: apv:Apar_0911 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C8W7A1  uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_003801073.1	COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR006675:IPR003607:IPR002646:IPR006674; KEGG: apv:Apar_0497 metal dependent phosphohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; PRIAM: tRNA adenylyltransferase; SMART: metal-dependent phosphohydrolase HD region; SPTR: B9CKT6 Cca-adding enzyme; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG
YP_003801074.1	COGs: COG3579 Aminopeptidase C; InterPro IPR000169:IPR004134; KEGG: apv:Apar_0899 bleomycin hydrolase; PFAM: peptidase C1B bleomycin hydrolase; PRIAM: Bleomycin hydrolase; SPTR: B9CKX1 Aminopeptidase C; PFAM: Peptidase C1-like family
YP_003801075.1	COGs: COG3579 Aminopeptidase C; InterPro IPR000169:IPR004134; KEGG: apv:Apar_0900 bleomycin hydrolase; PFAM: peptidase C1B bleomycin hydrolase; PRIAM: Bleomycin hydrolase; SPTR: B9CKX3 Aminopeptidase C; PFAM: Peptidase C1-like family
YP_003801076.1	COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR006402:IPR005834; KEGG: lga:LGAS_0945 HAD superfamily hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: B0PC30  uncharacterized protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Epoxide hydrolase N-terminal domain-like phosphatase
YP_003801077.1	COGs: COG1739 conserved hypothetical protein; InterPro IPR020568:IPR001498; KEGG: apv:Apar_0903 protein of unknown function UPF0029; PFAM: protein of unknown function UPF0029; SPTR: B9CKX4 Impact family member yigz; PFAM: Uncharacterized protein family UPF0029; Domain of unknown function (DUF1949); TIGRFAM: conserved hypothetical protein TIGR00257
YP_003801078.1	InterPro IPR019933:IPR007793; KEGG: apv:Apar_0494 DivIVA family protein; PFAM: DivIVA family protein; SPTR: C2D7Y9 Cell division initiation protein DivIVA; TIGRFAM: DivIVA domain; PFAM: DivIVA protein; TIGRFAM: DivIVA domain
YP_003801079.1	InterPro IPR003425; KEGG: ele:Elen_2082 protein of unknown function YGGT; PFAM: protein of unknown function YGGT; SPTR: C2D7Z0 Protein of hypothetical function YGGT; PFAM: YGGT family
YP_003801080.1	COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR016040:IPR000304:IPR004455; KEGG: hoh:Hoch_4718 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: C2D7Z1 Possible pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase
YP_003801081.1	InterPro IPR007561; KEGG: apv:Apar_0492 protein of unknown function DUF552; PFAM: protein of unknown function DUF552; SPTR: C2D7Z2  uncharacterized protein; PFAM: Protein of unknown function (DUF552)
YP_003801082.1	COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078:IPR001608; KEGG: apv:Apar_0491 alanine racemase domain protein; PFAM: alanine racemase domain protein; SPTR: A4E7E3  uncharacterized protein; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family
YP_003801083.1	COGs: COG1496 conserved hypothetical protein; InterPro IPR011324:IPR003730; KEGG: apv:Apar_0490 protein of unknown function DUF152; PFAM: protein of unknown function DUF152; SPTR: B9CKU3 Protein YfiH; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: conserved hypothetical protein TIGR00726
YP_003801084.1	COGs: COG0206 Cell division GTPase; InterProIPR019746:IPR008280:IPR020805:IPR000158:IPR 003008:IPR018316; KEGG: apv:Apar_0489 cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: C2D7Z5 Cell division protein ftsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ
YP_003801085.1	COGs: COG1589 Cell division septal protein; InterPro IPR013685; KEGG: apv:Apar_0488 polypeptide-transport-associated domain protein FtsQ-type; PFAM: Polypeptide-transport-associated domain protein FtsQ-type; SPTR: B9CKU6 Potra domain, ftsq-type family; PFAM: POTRA domain, FtsQ-type
YP_003801086.1	COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; InterProIPR016166:IPR011601:IPR003170:IPR006094:IPR 016167:IPR016169; KEGG: apv:Apar_0487 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: A4E7F3  uncharacterized protein; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase
YP_003801087.1	COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterProIPR013221:IPR004101:IPR005758:IPR000713:IPR 016040; KEGG: apv:Apar_0486 UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; SPTR: C2D7Z7 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate--alanine ligase
YP_003801088.1	COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR006009:IPR004276:IPR007235; KEGG: apv:Apar_0485 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; PRIAM: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; SPTR: A4E7F5  uncharacterized protein; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase family 28 N-terminal domain; Glycosyltransferase family 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
YP_003801089.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: apv:Apar_0484 cell cycle protein; PFAM: cell cycle protein; SPTR: C8W9X7 Cell cycle protein; PFAM: Cell cycle protein; TIGRFAM: cell division protein FtsW
YP_003801090.1	COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR013221:IPR004101:IPR005762:IPR016040; KEGG: apv:Apar_0483 UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: B9CKV0 UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_003801091.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018480:IPR003524:IPR018481; KEGG: apv:Apar_0482 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR: B9CKV1 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-trans ferase; PFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase
YP_003801092.1	COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR013221:IPR004101:IPR005863:IPR000713; KEGG: apv:Apar_0481 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: B9CKV2 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-d iaminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase family, catalytic domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_003801093.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR012338:IPR005311:IPR001460; KEGG: apv:Apar_0480 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: C2D803 Possible peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain
YP_003801094.1	KEGG: apv:Apar_0479 hypothetical protein; SPTR: C8W9X2  uncharacterized protein; PFAM: Cell division protein FtsL; TIGRFAM: cell division protein FtsL
YP_003801095.1	COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; InterPro IPR002903; KEGG: apv:Apar_0478 S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; SPTR: C8W9X1 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW
YP_003801096.1	COGs: COG2001 conserved hypothetical protein; InterPro IPR020603:IPR003444; KEGG: apv:Apar_0477 protein of unknown function UPF0040; PFAM: MraZ domain; SPTR: C2D806  uncharacterized protein; PFAM: MraZ protein; TIGRFAM: mraZ protein
YP_003801097.1	COGs: COG4974 Site-specific recombinase XerD; InterProIPR011010:IPR010998:IPR011932:IPR004107:IPR 002104:IPR013762; KEGG: apv:Apar_0476 tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: C2D807 Possible integrase/recombinase XerD; TIGRFAM: tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerD
YP_003801098.1	COGs: COG0504 CTP synthase (UTP-ammonia lyase); InterPro IPR004468:IPR017926:IPR017456:IPR000991; KEGG: apv:Apar_0475 CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; PRIAM: CTP synthase; SPTR: C2D808 CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase
YP_003801099.1	COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604:IPR003395; KEGG: apv:Apar_0474 DNA repair protein RecN; PFAM: SMC domain protein; SPTR: B9CNZ8 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN
YP_003801100.1	COGs: COG0061 sugar kinase; InterPro IPR016064:IPR002504:IPR017437; KEGG: apv:Apar_0473 ATP-NAD/AcoX kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: C2D811 Possible NAD(+) kinase; PFAM: ATP-NAD kinase
YP_003801101.1	COGs: COG1189 rRNA methylase; InterPro IPR004538:IPR002942:IPR002877; KEGG: apv:Apar_0472 hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; SPTR: C4F896  uncharacterized protein; TIGRFAM: hemolysin A; PFAM: FtsJ-like methyltransferase; TIGRFAM: hemolysin TlyA family protein
YP_003801102.1	KEGG: apv:Apar_0471 hypothetical protein; SPTR: B9CP01  exodeoxyribonuclease 7 small subunit
YP_003801103.1	COGs: COG0781 Transcription termination factor; InterPro IPR006027:IPR011605; KEGG: apv:Apar_0470 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; SPTR: B9CP02 Transcription antitermination factor NusB; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB
YP_003801104.1	KEGG: apv:Apar_0469 hypothetical protein; SPTR: C8W9W2  uncharacterized protein; PFAM: Protein of unknown function (DUF322)
YP_003801105.1	COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); InterProIPR016027:IPR008991:IPR013852:IPR020599:IPR 011768:IPR013185:IPR001059:IPR015365:IPR014722:IPR012340; KEGG: apv:Apar_0468 translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW domain protein; Elongation factor P/YeiP protein; SPTR: C2D816 Elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P
YP_003801106.1	COGs: COG4687 conserved hypothetical protein; InterPro IPR010360; KEGG: apv:Apar_0467 protein of unknown function DUF956; PFAM: protein of unknown function DUF956; SPTR: C2D817  uncharacterized protein; PFAM: Domain of unknown function (DUF956)
YP_003801107.1	COGs: COG3716 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IID; InterPro IPR001589:IPR018405:IPR004704; KEGG: apv:Apar_0466 PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; SPTR: C8W9V9 PTS system, mannose/fructose/sorbose family, IID subunit; TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IID component
YP_003801108.1	COGs: COG3715 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIC; InterPro IPR004700; KEGG: apv:Apar_0465 phosphotransferase system PTS sorbose-specific IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; SPTR: B9CP07 Fructose permease iic component; PFAM: PTS system sorbose-specific iic component
YP_003801109.1	COGs: COG3444 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIB; InterPro IPR004720:IPR004701; KEGG: apv:Apar_0464 protein-N(pi)-phosphohistidine--sugar phosphotransferase; PFAM: PTS system sorbose subfamily IIB component; PTS system fructose subfamily IIA component; PRIAM: Protein-N(pi)-phosphohistidine--sugar phosphotransferase; SPTR: B9CP08 Mannose-specific phosphotransferase system component iiab; PFAM: PTS system fructose IIA component; PTS system sorbose subfamily IIB component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA component; PTS system, mannose/fructose/sorbose family, IIB component
YP_003801110.1	InterPro IPR008970:IPR019931:IPR008454; KEGG: sar:SAR2774 collagen adhesin precursor; PFAM: Cna B domain protein; SPTR: A8SK73  uncharacterized protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna protein B-type domain; TIGRFAM: LPXTG-motif cell wall anchor domain
YP_003801111.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994:IPR001131:IPR000587; KEGG: apv:Apar_0463 peptidase M24; PFAM: peptidase M24; creatinase; SPTR: C8W9V6 Peptidase M24; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain
YP_003801112.1	COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR002658; KEGG: apv:Apar_0462 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; SPTR: C8W9V5 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase
YP_003801113.1	COGs: COG0703 Shikimate kinase; InterPro IPR000623; KEGG: apv:Apar_0461 shikimate kinase; PFAM: shikimate kinase; PRIAM: Shikimate kinase; SPTR: C8W9V4 Shikimate kinase; PFAM: Shikimate kinase
YP_003801114.1	COGs: COG2179 hydrolase of the HAD superfamily; InterPro IPR010021:IPR006549:IPR005834; KEGG: apv:Apar_0460 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: B9CP12 Had superfamily (Subfamily iiia) phosphatase; TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
YP_003801115.1	COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: apv:Apar_0459 aminodeoxychorismate lyase; PFAM: aminodeoxychorismate lyase; SPTR: C2D838 Possible aminodeoxychorismate lyase; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein TIGR00247
YP_003801116.1	COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); InterPro IPR012337:IPR005227:IPR006641; KEGG: apv:Apar_0458 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; SPTR: C8W9V1 Holliday junction resolvase YqgF; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: conserved hypothetical protein TIGR00250
YP_003801117.1	COGs: COG0013 Alanyl-tRNA synthetase; InterProIPR018162:IPR018163:IPR002318:IPR018164:IPR 018165:IPR012947:IPR003156; KEGG: apv:Apar_0457 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; PRIAM: Alanine--tRNA ligase; SPTR: C8W9V0 Alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanyl-tRNA synthetase
YP_003801118.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: apv:Apar_0456 protein of unknown function UPF0118; PFAM: protein of unknown function UPF0118; SPTR: B9CP16  membrane protein; PFAM: Domain of unknown function DUF20
YP_003801119.1	COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterProIPR013325:IPR013324:IPR000943:IPR014322:IPR 014284:IPR007627:IPR007624:IPR007630; KEGG: apv:Apar_0455 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; SPTR: C8W9U8 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
YP_003801120.1	KEGG: apv:Apar_0454 hypothetical protein; SPTR: B9CP18  uncharacterized protein
YP_003801121.1	KEGG: apv:Apar_0453 hypothetical protein; SPTR: B9CP19  uncharacterized protein
YP_003801122.1	COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593:IPR003959; KEGG: apv:Apar_0452 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: B9CP20 Recombination factor protein RarA; PFAM: MgsA AAA+ ATPase C terminal; Holliday junction DNA helicase ruvB N-terminus
YP_003801123.1	COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006674; KEGG: apv:Apar_0451 metal-dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: B9CP21 Metal-dependent phosphohydrolase HD sub domain protein; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase
YP_003801124.1	InterProIPR016181:IPR013830:IPR000182:IPR001087:IPR 013831; KEGG: apv:Apar_0450 lipolytic protein G-D-S-L family; PFAM: GCN5-related N-acetyltransferase; lipolytic protein G-D-S-L family; SPTR: C2D847 Possible GCN5 N-acetyltransferase; PFAM: FR47-like protein
YP_003801125.1	InterPro IPR004843; KEGG: apv:Apar_0443 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: B9CP29 Serine/threonine protein phosphatase; PFAM: Calcineurin-like phosphoesterase
YP_003801126.1	COGs: COG3727 DNA G:T-mismatch repair endonuclease; InterPro IPR011335:IPR004603; KEGG: mbu:Mbur_1534 T/G mismatch-specific endonuclease; PFAM: DNA mismatch endonuclease vsr; SPTR: B6G7I4  uncharacterized protein; TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease Vsr
YP_003801127.1	KEGG: apv:Apar_0442 hypothetical protein; SPTR: C8W9T5  uncharacterized protein
YP_003801128.1	COGs: COG2270 Permease of the major facilitator superfamily; InterPro IPR016196:IPR011701; KEGG: shi:Shel_01490 major facilitator superfamily permease; PFAM: major facilitator superfamily MFS_1; SPTR: C7N1D0 Major facilitator superfamily permease; PFAM: Vacuole effluxer Atg22 like
YP_003801129.1	COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR006379:IPR013200; KEGG: apv:Apar_0157 HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: B9CM54 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB
YP_003801130.1	COGs: COG3864 conserved hypothetical protein; KEGG: shi:Shel_16100 hypothetical protein; SPTR: B0MMX9  uncharacterized protein; PFAM: Predicted metallopeptidase (DUF2201)
YP_003801131.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR011704; KEGG: ele:Elen_2494 ATPase associated with various cellular activities AAA_5; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; SPTR: C8WL70 ATPase associated with various cellular activities AAA_5; PFAM: AAA domain (dynein-related subfamily)
YP_003801132.1	COGs: COG2461 conserved hypothetical protein; InterPro IPR015077:IPR007380:IPR012312; KEGG: apv:Apar_0510  PAS/PAC sensor protein; PFAM: protein of unknown function DUF438; Domain of unknown function DUF1858; Hemerythrin HHE cation binding domain protein; SPTR: C8WA03  PAS/PAC sensor protein; PFAM: Family of unknown function (DUF438); Hemerythrin HHE cation binding domain; Domain of unknown function (DUF1858)
YP_003801133.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: ele:Elen_2177 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: C8WJL1  uncharacterized protein; PFAM: Predicted permease
YP_003801134.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: shi:Shel_01920 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C7N1H0 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter
YP_003801135.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: cbe:Cbei_4797 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: A4E7Q2  uncharacterized protein; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003801136.1	KEGG: gdj:Gdia_1172 cobalamin 5'-phosphate synthase; SPTR: C8SW58  uncharacterized protein
YP_003801137.1	KEGG: hypothetical protein; SPTR: A8RHK1  uncharacterized protein
YP_003801138.1	COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR017963:IPR001126; KEGG: apv:Apar_1117 UMUC domain protein DNA-repair protein; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: C8W7V4 UMUC domain protein DNA-repair protein; PFAM: impB/mucB/samB family
YP_003801139.1	COGs: COG0693  intracellular protease/amidase; InterPro IPR006287:IPR002818; KEGG: apv:Apar_1118 DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; SPTR: C8W7V5 DJ-1 family protein; TIGRFAM: DJ-1 family protein; PFAM: DJ-1/PfpI family; TIGRFAM: DJ-1 family protein
YP_003801140.1	COGs: COG1620 L-lactate permease; InterPro IPR003804; KEGG: cbi:CLJ_B1050 L-lactate permease; PFAM: L-lactate permease; SPTR: B6G9R8  uncharacterized protein; TIGRFAM: L-lactate transport; PFAM: L-lactate permease; TIGRFAM: L-lactate transport
YP_003801141.1	COGs: COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006219:IPR006218:IPR013785; KEGG: eel:EUBELI_01114 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: C2D8S3 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_003801142.1	COGs: COG4690 Dipeptidase; InterPro IPR005322; KEGG: bad:BAD_0168 dipeptidase; PFAM: peptidase U34 dipeptidase; SPTR: B6XWR1  uncharacterized protein; PFAM: Peptidase family C69
YP_003801143.1	COGs: COG1272 membrane protein hemolysin III homolog; InterPro IPR005744:IPR004254; KEGG: ccu:Ccur_01230 channel protein, hemolysin III family; PFAM: Hly-III family protein; SPTR: C7MLQ0 Channel protein, hemolysin III family; TIGRFAM: channel protein, hemolysin III family; PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family
YP_003801144.1	COGs: COG3883 conserved hypothetical protein; InterPro IPR006311:IPR017909; KEGG: apv:Apar_1075 hypothetical protein; SPTR: C2D8S1  uncharacterized protein; TIGRFAM: ATP synthase, F1 delta subunit
YP_003801145.1	InterPro IPR000045; KEGG: ele:Elen_0046 peptidase A24A domain protein; PFAM: peptidase A24A prepilin type IV; SPTR: C8WIR9 Peptidase A24A domain protein; PFAM: Type IV leader peptidase family
YP_003801146.1	InterPro IPR008407; KEGG: branched-chain amino acid transport; PFAM: branched-chain amino acid transport; SPTR: A8SF60  uncharacterized protein; PFAM: Branched-chain amino acid transport protein (AzlD)
YP_003801147.1	COGs: COG1296 branched-chain amino acid permease (azaleucine resistance); InterPro IPR011606; KEGG: AzlC family protein; PFAM: AzlC family protein; SPTR: C0FZ18  uncharacterized protein; PFAM: AzlC protein
YP_003801148.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: pjd:Pjdr2_3730 transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C5ERT4 HTH-type transcriptional regulator cysB; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_003801149.1	COGs: COG3022 conserved hypothetical protein; InterPro IPR018486:IPR005583; KEGG: ele:Elen_0431 protein of unknown function DUF328; PFAM: protein of unknown function DUF328; SPTR: C8WL89  uncharacterized protein; PFAM: Protein of unknown function (DUF328)
YP_003801150.1	KEGG: apv:Apar_1076 hypothetical protein; SPTR: C8W7R3  uncharacterized protein
YP_003801151.1	KEGG: mno:Mnod_3087 glyoxylate carboligase; SPTR: B8IJH8 Glyoxylate carboligase
YP_003801152.1	COGs: COG2190 phosphotransferase system IIA components; InterPro IPR011055:IPR001127; KEGG: apv:Apar_1077 PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; SPTR: C8W7R4 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; TIGRFAM: PTS system, glucose subfamily, IIA component
YP_003801153.1	InterPro IPR016181; KEGG: apv:Apar_1331 GCN5-related N-acetyltransferase; SPTR: C2D8R8  uncharacterized protein
YP_003801154.1	COGs: COG4868 conserved hypothetical protein; InterPro IPR014999; KEGG: apv:Apar_0306 domain of unknown function DUF1846; PFAM: Domain of unknown function DUF1846; SPTR: C8W9E9  uncharacterized protein; PFAM: Domain of unknown function (DUF1846)
YP_003801155.1	KEGG: ele:Elen_0680 hypothetical protein; SPTR: B9CML4  uncharacterized protein
YP_003801156.1	COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterProIPR008995:IPR017871:IPR003593:IPR003439:IPR 013611; KEGG: apv:Apar_0011 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C2D8R6 Fe(3+) ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter; TOBE domain
YP_003801157.1	COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; KEGG: apv:Apar_0010 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C2D8R5 Iron (Fe3+) ABC superfamily ATP binding cassette transporter, membrane protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003801158.1	COGs: COG1840 ABC-type Fe3+ transport system periplasmic component; InterPro IPR006311:IPR017909:IPR019546:IPR006059; KEGG: apv:Apar_0009 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: C2D8R4 Iron (Fe3+) ABC superfamily ATP binding cassette transporter, binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003801159.1	InterPro IPR000834; KEGG: bha:BH3865 hypothetical protein; SMART: peptidase M14 carboxypeptidase A; SPTR: C8P1H1  uncharacterized protein; PFAM: Zinc carboxypeptidase
YP_003801160.1	COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: shi:Shel_17990 DegV family protein; PFAM: DegV family protein; SPTR: C4F9H5  uncharacterized protein; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family
YP_003801161.1	InterPro IPR000835:IPR011991; KEGG: shi:Shel_17980 hypothetical protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: A4EAT0  uncharacterized protein; PFAM: IclR helix-turn-helix domain
YP_003801162.1	InterPro IPR005490; KEGG: ele:Elen_3025 ErfK/YbiS/YcfS/YnhG family protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: C2D8R3 ErfK family protein; PFAM: L,D-transpeptidase catalytic domain
YP_003801163.1	COGs: COG0306 phosphate/sulphate permease; InterPro IPR001204; KEGG: apv:Apar_0043 phosphate transporter; PFAM: phosphate transporter; SPTR: B9CKC1 Probable low-affinity inorganic phosphate transporter 2; PFAM: phosphate transporter family
YP_003801164.1	COGs: COG1392 phosphate transport regulator (distant homolog of PhoU); InterPro IPR018445; KEGG: apv:Apar_0042 protein of unknown function DUF47; PFAM: Putitive phosphate transport regulator; SPTR: B9CKC2  uncharacterized protein; PFAM: Protein of unknown function DUF47; TIGRFAM: conserved hypothetical protein TIGR00153
YP_003801165.1	InterPro IPR003675; KEGG: ele:Elen_3006 abortive infection protein; PFAM: Abortive infection protein; SPTR: C2D8R2  uncharacterized protein; PFAM: CAAX amino terminal protease family
YP_003801166.1	COGs: COG1045 Serine acetyltransferase; InterPro IPR011004:IPR018357:IPR005881:IPR001451; KEGG: esi:Exig_0074 serine O-acetyltransferase; SPTR: C4FBY4  uncharacterized protein; TIGRFAM: serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase
YP_003801167.1	COGs: COG0031 Cysteine synthase; InterPro IPR001926:IPR001216:IPR005856:IPR005859; KEGG: bth:BT_3080 cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Q8A375 Cysteine synthase; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases
YP_003801168.1	COGs: COG0205 6-phosphofructokinase; InterPro IPR000023:IPR015912:IPR012003; KEGG: ere:EUBREC_0327 6-phosphofructokinase; PFAM: phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: C4F7P0  uncharacterized protein; PFAM: phosphofructokinase
YP_003801169.1	InterPro IPR004360; KEGG: apv:Apar_1204 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C8W842 Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003801170.1	InterPro IPR012337; KEGG: apv:Apar_0505 hypothetical protein; SPTR: C2D8Q9  uncharacterized protein
YP_003801171.1	KEGG: nth:Nther_0383 hypothetical protein; SPTR: C1V6P6  uncharacterized protein
YP_003801172.1	COGs: COG0326 Molecular chaperone HSP90 family; InterProIPR020568:IPR003594:IPR019805:IPR001404:IPR 020575:IPR020576; KEGG: ele:Elen_0192 heat shock protein HSP90; PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: B9CMC7 Chaperone protein HtpG; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein
YP_003801174.1	COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR016193:IPR016192:IPR016473:IPR002125; KEGG: ccu:Ccur_00700 deoxycytidylate deaminase; PFAM: CMP/dCMP deaminase zinc-binding; PRIAM: dCMP deaminase; SPTR: B6GCF9  uncharacterized protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_003801175.1	COGs: COG2071 glutamine amidotransferase; InterPro IPR017926:IPR011697; KEGG: bln:Blon_1611 peptidase C26; PFAM: peptidase C26; SPTR: B7GSB0 Peptidase C26; PFAM: Peptidase C26
YP_003801176.1	KEGG: bcx:BCA_4771 hypothetical protein; SPTR: B5UY14  uncharacterized protein
YP_003801177.1	COGs: COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; InterPro IPR011257; KEGG: bpy:Bphyt_2509 HhH-GPD family protein; SPTR: B6G8M1  uncharacterized protein
YP_003801178.1	KEGG: esa:ESA_pESA2p06561 hypothetical protein; SPTR: A7MRC6  uncharacterized protein; PFAM: Restriction endonuclease NotI
YP_003801179.1	KEGG: tde:TDE1845 hypothetical protein; SPTR: B5CKR1  uncharacterized protein
YP_003801180.1	KEGG: tde:TDE1846 hypothetical protein; SPTR: C4FZL1  uncharacterized protein
YP_003801181.1	KEGG: hypothetical protein; SPTR: A8S6I5  uncharacterized protein
YP_003801182.1	KEGG: amt:Amet_2548 sporulation domain-containing protein; SPTR: C2HHY3  uncharacterized protein
YP_003801183.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR015424:IPR010982:IPR001387:IPR001176:IPR 004839:IPR015421:IPR015422; KEGG: shi:Shel_16560 L-aspartate aminotransferase; PFAM: aminotransferase class I and II; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C7N6Z0 L-aspartate aminotransferase; PFAM: Aminotransferase class I and II; Helix-turn-helix
YP_003801184.1	COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: mpe:MYPE2950 NADPH-dependent reductase; PFAM: NADPH-dependent FMN reductase; SPTR: C0WE79  uncharacterized protein; PFAM: NADPH-dependent FMN reductase
YP_003801185.1	KEGG: dat:HRM2_32380 hypothetical protein; SPTR: C9PPH9  uncharacterized protein
YP_003801186.1	COGs: COG0679 permease; InterPro IPR004776; KEGG: ere:EUBREC_2006 hypothetical protein; PFAM: Auxin Efflux Carrier; SPTR: C5EQN8  uncharacterized protein; PFAM: Membrane transport protein
YP_003801187.1	COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterProIPR016185:IPR000291:IPR005905:IPR011761:IPR 011127:IPR011095:IPR013817:IPR013816; KEGG: dsy:DSY3690 hypothetical protein; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: C1WNX3 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_003801188.1	COGs: COG1882 Pyruvate-formate lyase; InterPro IPR019777:IPR010098:IPR001150:IPR004184; KEGG: spm:spyM18_2110  pyruvate formate-lyase 2; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; PRIAM: Formate C-acetyltransferase; SPTR: C0ESC0  uncharacterized protein; TIGRFAM: pyruvate formate-lyase; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: formate acetyltransferase 1; pyruvate formate-lyase
YP_003801189.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterProIPR017900:IPR001989:IPR011352:IPR012839:IPR 017896:IPR007197:IPR001450; KEGG: cbl:CLK_0643 pyruvate formate-lyase-activating enzyme; PFAM: Radical SAM domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: [Formate-C-acetyltransferase]-activating enzyme; SPTR: B0MDH9  uncharacterized protein; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM superfamily; TIGRFAM: glycyl-radical enzyme activating protein family
YP_003801190.1	COGs: COG1349 Transcriptional regulators of sugar metabolism; InterProIPR018356:IPR001034:IPR000485:IPR014036:IPR 011991; KEGG: cbl:CLK_0642  HTH-type transcriptional regulator YciT; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C2D903 DeoR family transcriptional regulator; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain
YP_003801191.1	COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR002467:IPR001714:IPR004027; KEGG: ccu:Ccur_00180 methionine aminopeptidase, type I; PFAM: peptidase M24; SEC-C motif domain protein; PRIAM: Methionyl aminopeptidase; SPTR: C7MLE5 Methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: Metallopeptidase family M24; SEC-C motif; TIGRFAM: methionine aminopeptidase, type I
YP_003801192.1	KEGG: ami:Amir_3582 pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: C6WBQ5 Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_003801193.1	KEGG: bbt:BBta_5705 hypothetical protein; SPTR: A5ENB4  uncharacterized protein
YP_003801194.1	COGs: COG2268 conserved hypothetical protein; InterPro IPR001107; KEGG: eel:EUBELI_01268 flotillin; PFAM: band 7 protein; SMART: band 7 protein; SPTR: C4Z102 Flotillin; PFAM: SPFH domain / Band 7 family
YP_003801195.1	KEGG: cjk:jk0177  Fe-S oxidoreductase; SPTR: C6RBK9 Iron-sulfur cluster-binding protein
YP_003801196.1	COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR000150:IPR013200; KEGG: ere:EUBREC_2272 HAD superfamily hydrolase YkrA-like protein; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: A4EBW5  uncharacterized protein; PFAM: haloacid dehalogenase-like hydrolase
YP_003801197.1	COGs: COG1263 phosphotransferase system IIC components glucose/maltose/N-acetylglucosamine-specific; InterProIPR001996:IPR018113:IPR010975:IPR011535:IPR 013013:IPR003352; KEGG: cbe:Cbei_4705 PTS system, alpha-glucoside-specific IIBC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system EIIB/cysteine, phosphorylation site; SPTR: B6G8F2  uncharacterized protein; TIGRFAM: PTS system, alpha-glucoside-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system, EIIC; phosphotransferase system, EIIB; TIGRFAM: PTS system, glucose-like IIB component; PTS system, alpha-glucoside-specific IIBC component; TC 4.A.1.1.8
YP_003801198.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: apv:Apar_0603 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: B9CNA9 Transcriptional repressor of the trehalose operon; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain; TIGRFAM: trehalose operon repressor, B. subtilis-type
YP_003801199.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594:IPR009082:IPR003661:IPR004358:IPR 005467; KEGG: dhd:Dhaf_2302 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: B6FW43 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003801200.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR001867:IPR011991; KEGG: dhd:Dhaf_2301 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: B6FW42  uncharacterized protein; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003801201.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845:IPR000873; KEGG: ele:Elen_1793 amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; SPTR: C8WI17 Amino acid adenylation domain protein; PFAM: AMP-binding enzyme; TIGRFAM: amino acid adenylation domain
YP_003801202.1	COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: ele:Elen_1792 membrane bound O-acyl transferase MBOAT family protein; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: C8WI16 Membrane bound O-acyl transferase MBOAT family protein; PFAM: MBOAT family
YP_003801203.1	InterPro IPR009081:IPR003230:IPR006163; KEGG: ele:Elen_1791 D-alanyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: C8WI15 D-alanyl carrier protein; TIGRFAM: D-alanyl carrier protein; PFAM: phosphopantetheine attachment site; TIGRFAM: D-alanine--poly(phosphoribitol) ligase, subunit 2
YP_003801204.1	COGs: COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein); InterPro IPR013830:IPR007002:IPR006998; KEGG: ele:Elen_1790 DltD domain protein; PFAM: DltD domain protein; DltD central domain protein; SPTR: C8WI14 DltD domain protein; PFAM: DltD central region; DltD C-terminal region
YP_003801205.1	KEGG: ele:Elen_1789 hypothetical protein; SPTR: C8WI13  uncharacterized protein
YP_003801206.1	COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122; KEGG: ccu:Ccur_00410 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; SPTR: C7MLG8 Uracil-DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily
YP_003801207.1	COGs: COG2357 conserved hypothetical protein; InterPro IPR007685; KEGG: smu:SMU.926 GTP-pyrophosphokinase; PFAM: RelA/SpoT domain protein; SPTR: B6FL35  uncharacterized protein; PFAM: Region found in RelA / SpoT proteins
YP_003801208.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594:IPR009082:IPR003661:IPR004358:IPR 005467; KEGG: ele:Elen_0372 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: B6FL26 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003801209.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR016032:IPR001789:IPR011991; KEGG: dhd:Dhaf_2301 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C9L611 DNA-binding response regulator DltR; PFAM: Response regulator receiver domain
YP_003801210.1	InterPro IPR003838; KEGG: apv:Apar_0164 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: C4F7P7  uncharacterized protein; PFAM: Predicted permease
YP_003801211.1	InterPro IPR003838; KEGG: ccu:Ccur_03350 predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component; PFAM: protein of unknown function DUF214; SPTR: B6G7I8  uncharacterized protein; PFAM: Predicted permease
YP_003801212.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: ccu:Ccur_03360 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B6G7I7  uncharacterized protein; PFAM: ABC transporter
YP_003801213.1	KEGG: tbd:Tbd_0636 diguanylate cyclase
YP_003801214.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594:IPR009082:IPR004358:IPR005467; KEGG: ccu:Ccur_03370 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: B6GAQ1 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003801215.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR001867:IPR011991; KEGG: apv:Apar_1082 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: B6GAQ0  uncharacterized protein; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003801216.1	InterPro IPR012506; KEGG: pla:Plav_0516 YhhN family protein; PFAM: YhhN family protein; SPTR: A7HQF6 YhhN family protein; PFAM: YhhN-like protein
YP_003801217.1	KEGG: blo:BL1462 hypothetical protein; SPTR: Q8G4C6  uncharacterized protein
YP_003801218.1	COGs: COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system; InterPro IPR012753:IPR007712; KEGG: kse:Ksed_24250 addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; SPTR: A4ED86  uncharacterized protein; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: Plasmid stabilisation system protein; TIGRFAM: addiction module toxin, RelE/StbE family
YP_003801219.1	KEGG: ccu:Ccur_10640 hypothetical protein; SPTR: A4ED87  uncharacterized protein
YP_003801220.1	InterPro IPR001387:IPR010982; KEGG: shi:Shel_15940 predicted transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C7N6S8 Predicted transcriptional regulator; PFAM: Helix-turn-helix
YP_003801221.1	InterPro IPR005021; KEGG: cgt:cgR_1895 hypothetical protein; PFAM: Terminase; SPTR: A7A6C8  uncharacterized protein; PFAM: Phage Terminase
YP_003801223.1	KEGG: ccu:Ccur_10610 hypothetical protein; SPTR: C7MPB2  uncharacterized protein
YP_003801224.1	KEGG: spz:M5005_Spy_0772 hypothetical protein; SPTR: B9CMG5  uncharacterized protein; PFAM: CRISPR-associated protein (Cas_Csn2)
YP_003801225.1	COGs: COG3512 conserved hypothetical protein; InterPro IPR003799:IPR019199; KEGG: fma:FMG_0060 hypothetical protein; PFAM: CRISPR associated protein Cas2; SPTR: B9CMG4 CRISPR-associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2
YP_003801226.1	COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR019855:IPR002729; KEGG: tde:TDE0328 CRISPR-associated Cas1 family protein; PFAM: protein of unknown function DUF48; SPTR: B9CMG3 CRISPR-associated protein Cas1, NMENI subtype; TIGRFAM: CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1, NMENI subtype; CRISPR-associated protein Cas1
YP_003801227.1	COGs: COG3513 conserved hypothetical protein; InterPro IPR010145; KEGG: smu:SMU.1405c hypothetical protein; SPTR: C6SPS8  uncharacterized protein; TIGRFAM: CRISPR-associated protein, Csn1 family; TIGRFAM: CRISPR-associated protein, Csn1 family
YP_003801228.1	COGs: COG1435 Thymidine kinase; InterPro IPR001267; KEGG: cbt:CLH_0472 thymidine kinase; PFAM: thymidine kinase; PRIAM: Thymidine kinase; SPTR: C7H966 Thymidine kinase; PFAM: Thymidine kinase
YP_003801229.1	COGs: COG2315 conserved hypothetical protein; InterPro IPR007351; KEGG: cff:CFF8240_1720 YyaQ; PFAM: protein of unknown function DUF419; SPTR: A0RRK5 YyaQ; PFAM: Protein of unknown function (DUF419)
YP_003801230.1	KEGG: dge:Dgeo_2691 xylulokinase; SPTR: Q9A5M2 HfsE
YP_003801231.1	COGs: COG0159 Tryptophan synthase alpha chain; InterPro IPR013785:IPR002028:IPR011060; KEGG: cbt:CLH_3241 tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; SPTR: C7IJE9 Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit
YP_003801232.1	COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR018211:IPR001670; KEGG: cbt:CLH_3242 NADPH-dependent butanol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: C5UZM6 NADPH-dependent butanol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase
YP_003801233.1	COGs: COG0434 TIM-barrel enzyme; InterPro IPR005137:IPR011060; KEGG: cbt:CLH_3243 hypothetical protein; PFAM: photosystem I assembly BtpA; SPTR: B2V0X8  uncharacterized protein; PFAM: BtpA family; TIGRFAM: conserved hypothetical protein TIGR00259
YP_003801234.1	COGs: COG2820 Uridine phosphorylase; InterPro IPR000845; KEGG: cbt:CLH_3244 uridine phosphorylase; PFAM: purine or other phosphorylase family 1; SPTR: C0B5N8  uncharacterized protein; PFAM: phosphorylase superfamily
YP_003801235.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: cbt:CLH_3246 kinase, PfkB family; PFAM: PfkB domain protein; SPTR: C0B5N7  uncharacterized protein; PFAM: pfkB family carbohydrate kinase
YP_003801236.1	COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: cbt:CLH_3247 isochorismatase family protein; PFAM: isochorismatase hydrolase; SPTR: B2V0Y2 Isochorismatase family protein; PFAM: Isochorismatase family
YP_003801237.1	COGs: COG1079 ABC-type transport system permease component; InterPro IPR001851; KEGG: cbt:CLH_3248 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C5UZM1 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003801238.1	COGs: COG4603 ABC-type uncharacterized transport system permease component; InterPro IPR001851; KEGG: cbt:CLH_3249 sugar ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: B2V0Y4 Sugar ABC transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component
YP_003801239.1	COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; InterPro IPR003439:IPR017871:IPR003593; KEGG: cbt:CLH_3250 ribose import ATP-binding protein RbsA; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C0B5N2  uncharacterized protein; PFAM: ABC transporter
YP_003801240.1	COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR017909:IPR006311:IPR019546:IPR003760; KEGG: cbt:CLH_3251  basic membrane lipoprotein; PFAM: basic membrane lipoprotein; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: C0B5N1  uncharacterized protein; PFAM: Basic membrane protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003801241.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011663; KEGG: cce:Ccel_1074 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C7IJG0 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003801242.1	COGs: COG0392 integral membrane protein; InterPro IPR005242; KEGG: apv:Apar_0911 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C2D6P7  uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_003801243.1	COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR004506:IPR018318; KEGG: apv:Apar_0912 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; PFAM: tRNA methyl transferase-like; SPTR: B9CP36 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_003801244.1	COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterProIPR015421:IPR018201:IPR000192:IPR016454:IPR 015424; KEGG: apv:Apar_0913 aminotransferase class V; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: B9CP37 Cysteine desulfurase; PFAM: Aminotransferase class-V
YP_003801245.1	COGs: COG4905 membrane protein; InterPro IPR010540; KEGG: apv:Apar_0914 protein of unknown function DUF1113; PFAM: protein of unknown function DUF1113; SPTR: C8W7A4  uncharacterized protein; PFAM: Protein of unknown function (DUF1113)
YP_003801246.1	InterPro IPR002645:IPR003594; KEGG: apv:Apar_0915 anti-sigma-factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; ATP-binding region ATPase domain protein; SPTR: B9CP41 Anti-sigma factor antagonist; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; STAS domain; TIGRFAM: anti-anti-sigma factor
YP_003801247.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003018:IPR010822:IPR001932; KEGG: apv:Apar_0916  PAS/PAC sensor protein; PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; SPTR: B9CP42 Stage II sporulation protein E; PFAM: Stage II sporulation protein E (SpoIIE)
YP_003801248.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterProIPR003439:IPR010066:IPR017871:IPR013563:IPR 003593; KEGG: hor:Hore_04940 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: C2D7L1 ABC superfamily ATP binding cassette transporter, ABC protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
YP_003801249.1	COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR003439:IPR010066:IPR017871:IPR013563:IPR 003593; KEGG: rxy:Rxyl_0875 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: C2D7L0 ABC superfamily ATP binding cassette transporter, ABC protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
YP_003801250.1	COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: mrd:Mrad2831_3241 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C2D7K9 Dipeptide ABC superfamily ATP binding cassette transporter, membrane protein DppC; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003801251.1	COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: mab:MAB_0427 peptide ABC transporter transmembrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C2D7K8 Dipeptide ABC superfamily ATP binding cassette transporter, membrane protein DppB; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003801252.1	COGs: COG4166 ABC-type oligopeptide transport system periplasmic component; InterPro IPR017909:IPR006311:IPR000914; KEGG: 4-phytase; PFAM: extracellular solute-binding protein family 5; SPTR: C2D7K7 Dipeptide ABC superfamily ATP binding cassette transporter, binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003801253.1	InterPro IPR004692; KEGG: apv:Apar_0921 preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; SPTR: C2D7K4  uncharacterized protein; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit
YP_003801254.1	COGs: COG0149 Triosephosphate isomerase; InterPro IPR013785:IPR000652:IPR020861; KEGG: apv:Apar_0922 triosephosphate isomerase; PFAM: triosephosphate isomerase; SPTR: B9CP50 Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase
YP_003801255.1	COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR001576:IPR015824:IPR015901:IPR015911; KEGG: apv:Apar_0923 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: phosphoglycerate kinase; SPTR: B9CP51 phosphoglycerate kinase; PFAM: phosphoglycerate kinase
YP_003801256.1	COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR020832:IPR016040:IPR006424:IPR020830:IPR 020828:IPR020829:IPR020831; KEGG: apv:Apar_0924 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: A4ECN5  uncharacterized protein; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I
YP_003801257.1	COGs: COG1481 conserved hypothetical protein; InterPro IPR004042:IPR003802:IPR018478; KEGG: apv:Apar_0925 protein of unknown function DUF199; PFAM: protein of unknown function DUF199; Sporulation regulator WhiA-like; SPTR: B6GEG5  uncharacterized protein; PFAM: Sporulation Regulator WhiA N terminal; Sporulation Regulator WhiA C terminal domain; TIGRFAM: conserved hypothetical protein
YP_003801258.1	COGs: COG1660 P-loop-containing kinase; InterPro IPR005337; KEGG: apv:Apar_0926 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: B9CP54  uncharacterized protein; PFAM: P-loop ATPase protein family
YP_003801259.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683; KEGG: apv:Apar_0125 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: A4E9K7  uncharacterized protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold
YP_003801260.1	COGs: COG3663 G:T/U mismatch-specific DNA glycosylase; InterPro IPR005122; KEGG: ccu:Ccur_11950 G:T/U mismatch-specific DNA glycosylase; SPTR: C7MKT3 G:T/U mismatch-specific DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily
YP_003801261.1	COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterProIPR002328:IPR013154:IPR013149:IPR011032:IPR 016040; KEGG: lcb:LCABL_29170 zinc-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: B0MCY6  uncharacterized protein; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_003801262.1	COGs: COG3716 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IID; InterPro IPR004704; KEGG: lsl:LSL_1949 PTS system, mannose-specific IID component; PFAM: PTS system mannose/fructose/sorbose family IID component; SPTR: B0MCY5  uncharacterized protein; PFAM: PTS system mannose/fructose/sorbose family IID component
YP_003801263.1	COGs: COG3715 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIC; InterPro IPR004700; KEGG: lcb:LCABL_29220 C component PTS system mannose-specific enzyme II; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; SPTR: B0MCY4  uncharacterized protein; PFAM: PTS system sorbose-specific iic component
YP_003801264.1	COGs: COG3444 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIB; InterPro IPR004701:IPR004720; KEGG: lcb:LCABL_29230 AhaB protein (fragment); PFAM: PTS system fructose subfamily IIA component; PTS system sorbose subfamily IIB component; SPTR: B0MFJ3  uncharacterized protein; PFAM: PTS system fructose IIA component; PTS system sorbose subfamily IIB component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA component
YP_003801265.1	COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: cak:Caul_0312 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: A4E904  uncharacterized protein; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain
YP_003801266.1	COGs: COG3010  N-acetylmannosamine-6-phosphate epimerase; InterPro IPR007260:IPR011060; KEGG: apv:Apar_0927 N-acylglucosamine-6-phosphate 2-epimerase; PFAM:  N-acetylmannosamine-6-phosphate epimerase; PRIAM: N-acylglucosamine-6-phosphate 2-epimerase; SPTR: B9CP55 Bifunctional enzyme NanE/nanK; PFAM:  N-acetylmannosamine-6-phosphate epimerase
YP_003801267.1	COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: apv:Apar_0928 ROK family protein; PFAM: ROK family protein; SPTR: C8W7B7 ROK family protein; PFAM: ROK family
YP_003801268.1	COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220:IPR013785:IPR020625; KEGG: apv:Apar_0929 dihydrodipicolinate synthetase; PFAM: dihydrodipicolinate synthetase; SPTR: C8W7B8 Dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase family
YP_003801269.1	COGs: COG3458 Acetyl esterase (deacetylase); InterPro IPR008391; KEGG: apv:Apar_0930 acetyl xylan esterase; PFAM: Acetyl xylan esterase; SPTR: C4ILZ2 Xylan esterase 1; PFAM: Acetyl xylan esterase (AXE1)
YP_003801270.1	COGs: COG3458 Acetyl esterase (deacetylase); InterPro IPR008391; KEGG: apv:Apar_0931 acetyl xylan esterase; PFAM: Acetyl xylan esterase; SPTR: B9CP59 Acetyl xylan esterase; PFAM: Acetyl xylan esterase (AXE1)
YP_003801271.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR017871:IPR013563:IPR003593; KEGG: apv:Apar_0932 ABC transporter related; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: B9CP60 Oligopeptide transport ATP-binding protein AppF; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region
YP_003801272.1	COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR003439:IPR000515:IPR017871:IPR013563:IPR 003593; KEGG: apv:Apar_0933 ABC transporter related; PFAM: ABC transporter related; binding-protein-dependent transport systems inner membrane component; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: B9CP61 ABC transporter, ATP-binding /permease protein; PFAM: Binding-protein-dependent transport system inner membrane component; ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region
YP_003801273.1	COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: apv:Apar_0934 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B9CP62 Probable D,D-dipeptide transport system permease protein DdpB; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003801274.1	COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR017909:IPR006311:IPR000914; KEGG: apv:Apar_0935 extracellular solute-binding protein family 5; PFAM: extracellular solute-binding protein family 5; SPTR: B9CP63 ABC-type dipeptide/oligopeptide/nickel transport system, secreted component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003801275.1	COGs: COG0322 Nuclease subunit of the excinuclease complex; InterProIPR001943:IPR000305:IPR001162:IPR004791:IPR 010994:IPR009055; KEGG: apv:Apar_0938 excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: B9CP64 Excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit
YP_003801276.1	COGs: COG3919 ATP-grasp protein; InterPro IPR011761; KEGG: ele:Elen_2122 ATP-grasp protein-like protein; SPTR: B6GEH5  uncharacterized protein; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain
YP_003801277.1	COGs: COG1794 Aspartate racemase; InterPro IPR001920:IPR004380:IPR018187:IPR015942; KEGG: pab:PAB0912 aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Aspartate racemase; SPTR: B6GEH6  uncharacterized protein; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: aspartate racemase
YP_003801278.1	COGs: COG0139 phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496; KEGG: shi:Shel_15220 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; PRIAM: phosphoribosyl-AMP cyclohydrolase; SPTR: B6G8X8  uncharacterized protein; PFAM: phosphoribosyl-AMP cyclohydrolase
YP_003801279.1	COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR013027:IPR003953:IPR004112:IPR015939; KEGG: cpf:CPF_1684 pyridine nucleotide-disulphide oxidoreductase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: A4EB15  uncharacterized protein; PFAM: domain; FAD binding domain
YP_003801280.1	KEGG: ele:Elen_0434 hypothetical protein; SPTR: C8WL91  uncharacterized protein
YP_003801281.1	COGs: COG0107 Imidazoleglycerol-phosphate synthase; InterPro IPR013785:IPR004651:IPR006062:IPR011060; KEGG: shi:Shel_15230 imidazole glycerol phosphate synthase subunit HisF; PFAM: histidine biosynthesis protein; SPTR: A4EBZ7 Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit
YP_003801282.1	COGs: COG0106 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; InterPro IPR013785:IPR006062:IPR011060; KEGG: shi:Shel_15240 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; PFAM: histidine biosynthesis protein; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: B6G8Y0  uncharacterized protein; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
YP_003801283.1	COGs: COG0118 Glutamine amidotransferase; InterPro IPR017926:IPR010139:IPR000991:IPR016226; KEGG: shi:Shel_15250 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; SPTR: B6G8Y1  uncharacterized protein; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
YP_003801284.1	COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; InterPro IPR020565:IPR000807:IPR020568; KEGG: shi:Shel_15260 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; PRIAM: Imidazoleglycerol-phosphate dehydratase; SPTR: B6G8Y2 Imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase
YP_003801285.1	COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterProIPR015421:IPR015422:IPR005861:IPR004839:IPR 015424; KEGG: shi:Shel_15270 histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; SPTR: A4EBZ3  uncharacterized protein; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase
YP_003801286.1	COGs: COG0141 Histidinol dehydrogenase; InterPro IPR012131:IPR001692:IPR016161; KEGG: shi:Shel_15280 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; PRIAM: Histidinol dehydrogenase; SPTR: C7N6L3 Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase
YP_003801287.1	COGs: COG0124 Histidyl-tRNA synthetase; InterPro IPR006195:IPR013820:IPR002314; KEGG: shi:Shel_15290 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; tRNA synthetase class II (G H P and S); PRIAM: ATP phosphoribosyltransferase; SPTR: C7N6L4 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: tRNA synthetase class II core domain (G, H, P, S and T); ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, regulatory subunit; ATP phosphoribosyltransferase
YP_003801288.1	COGs: COG0728 membrane protein  virulence factor; InterPro IPR004268; KEGG: apv:Apar_0939 virulence factor MviN family protein; PFAM: virulence factor MVIN family protein; SPTR: C2D6J7 MVF family virulence factor transporter; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN
YP_003801289.1	COGs: COG2606 conserved hypothetical protein; InterPro IPR007214:IPR004369; KEGG: apv:Apar_0940 YbaK/EbsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; SPTR: C8W7C9 YbaK/ebsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein
YP_003801290.1	COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439:IPR004602:IPR017871; KEGG: apv:Apar_0941 excinuclease ABC, A subunit; PFAM: ABC transporter related; SPTR: B9CP67 Excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_003801291.1	KEGG: shi:Shel_11570 hypothetical protein; SPTR: C7N5K6  uncharacterized protein
YP_003801292.1	COGs: COG3655 transcriptional regulator protein; InterPro IPR001387:IPR010982; KEGG: gyc:GYMC61_1037 transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; SPTR: C6QTK7 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix
YP_003801293.1	KEGG: shi:Shel_11550 hypothetical protein; SPTR: C7N5K4  uncharacterized protein; PFAM: Protein of unknown function (DUF2975)
YP_003801294.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR000808:IPR019591; KEGG: apv:Apar_0943 ATP-binding protein; PFAM: ATPase-like, ParA/MinD; SPTR: C2D6L3 MRP-family nucleotide-binding protein; PFAM: ParA/MinD ATPase like; ArgK protein
YP_003801295.1	COGs: COG2081 flavoprotein; InterPro IPR004792; KEGG: apv:Apar_0944 HI0933 family protein; PFAM: HI0933 family protein; SPTR: B9CP69  uncharacterized protein; PFAM: HI0933-like protein; TIGRFAM: conserved hypothetical protein TIGR00275
YP_003801296.1	COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; InterPro IPR006076; KEGG: apv:Apar_0945 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: B9CP70 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_003801297.1	COGs: COG4690 Dipeptidase; InterPro IPR007110:IPR005322:IPR003599; KEGG: ccu:Ccur_00230 dipeptidase; PFAM: peptidase U34 dipeptidase; SMART: Immunoglobulin subtype; SPTR: A4E7K7  uncharacterized protein; PFAM: Peptidase family C69; TIGRFAM: LPXTG-motif cell wall anchor domain
YP_003801298.1	KEGG: ele:Elen_1672 hypothetical protein; SPTR: B9CML4  uncharacterized protein
YP_003801299.1	COGs: COG0556 Helicase subunit of the DNA excision repair complex; InterProIPR001943:IPR014021:IPR001650:IPR004807:IPR 014001:IPR009055; KEGG: apv:Apar_0946 excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: B9CNL9 UvrABC system protein B; TIGRFAM: excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit
YP_003801300.1	COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: fma:FMG_0345 soluble lytic murein transglycosylase; PFAM: Lytic transglycosylase catalytic; SPTR: C2D6L9 Soluble lytic murein transglycosylase; PFAM: Transglycosylase SLT domain
YP_003801301.1	COGs: COG0237 Dephospho-CoA kinase; InterPro IPR001977; KEGG: apv:Apar_0948 dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: B9CNM1 Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase
YP_003801302.1	KEGG: ere:EUBREC_2353 hypothetical protein; SPTR: C2D6M1 Zn-finger containing protein
YP_003801303.1	COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: apv:Apar_0952 peptidase M42 family protein; PFAM: peptidase M42 family protein; SPTR: C8W7E1 Peptidase M42 family protein; PFAM: M42 glutamyl aminopeptidase
YP_003801304.1	COGs: COG2195 Di- and tripeptidase; InterPro IPR010161:IPR002933:IPR011650; KEGG: apv:Apar_0953 peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20; PRIAM: Tripeptide aminopeptidase; SPTR: B9CNM5 Peptidase T; TIGRFAM: peptidase T; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T
YP_003801305.1	COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR017909:IPR006311:IPR019546:IPR000914; KEGG: apv:Apar_0955 4-phytase; PFAM: extracellular solute-binding protein family 5; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: C8W7E4 4-phytase; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003801306.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterProIPR003439:IPR010066:IPR017871:IPR013563:IPR 003593; KEGG: apv:Apar_0956 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: C8W7E5 Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
YP_003801307.1	COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR003439:IPR010066:IPR017871:IPR013563:IPR 003593; KEGG: apv:Apar_0957 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: C8W7E6 Oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
YP_003801308.1	COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: apv:Apar_0958 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B9CNN0 Dipeptide transport system permease protein DppC; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003801309.1	COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: apv:Apar_0959 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B9CNN1 Dipeptide transport system permease protein DppB; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003801310.1	COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR017909:IPR006311:IPR019546:IPR000914; KEGG: apv:Apar_0960 extracellular solute-binding protein family 5; PFAM: extracellular solute-binding protein family 5; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: C8W7E9 Extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003801311.1	COGs: COG0539 Ribosomal protein S1; InterPro IPR003029:IPR000110:IPR012340:IPR016027; KEGG: apv:Apar_0962 RNA binding S1 domain protein; PFAM: RNA binding S1 domain protein; SPTR: C2D7J9 Ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1
YP_003801312.1	InterPro IPR005834; KEGG: bbe:BBR47_10790 hypothetical protein; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C4F7L3  uncharacterized protein; PFAM: haloacid dehalogenase-like hydrolase
YP_003801313.1	COGs: COG3681 conserved hypothetical protein; InterPro IPR010469; KEGG: cbt:CLH_1338 hypothetical protein; PFAM: protein of unknown function DUF1063; SPTR: A4E754  uncharacterized protein; PFAM: Serine dehydratase alpha chain
YP_003801314.1	InterPro IPR006121:IPR017969; KEGG: apv:Apar_0963 heavy metal transport/detoxification protein; PFAM: Heavy metal transport/detoxification protein; SPTR: C8W7F2 Heavy metal transport/detoxification protein; PFAM: Heavy-metal-associated domain
YP_003801315.1	COGs: COG0328 Ribonuclease HI; InterPro IPR002156:IPR012337; KEGG: apv:Apar_1103 ribonuclease H; PFAM: ribonuclease H; SPTR: B6GBE2  uncharacterized protein; PFAM: RNase H
YP_003801316.1	COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR002298:IPR018320:IPR020046:IPR020047:IPR 001098:IPR002421:IPR008918:IPR020045:IPR012337; KEGG: apv:Apar_1104 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; DNA-directed DNA polymerase; SPTR: C8W7U1 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I
YP_003801317.1	COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027:IPR004099:IPR016156; KEGG: blj:BLD_1599 uncharacterized NAD(FAD)-dependent dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C4FAF5  uncharacterized protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003801318.1	COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR014746:IPR008146; KEGG: apv:Apar_1105 glutamine synthetase catalytic region; PFAM: glutamine synthetase catalytic region; SPTR: C2D754 Glutamate--ammonia ligase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal
YP_003801319.1	KEGG: apv:Apar_1108 hypothetical protein; SPTR: C4FC44  uncharacterized protein
YP_003801320.1	KEGG: similar to nuclear mitotic apparatus protein; SPTR: C9D1R8 Cobalt transport protein
YP_003801321.1	KEGG: ele:Elen_2943 hypothetical protein; SPTR: C8WNU2  uncharacterized protein
YP_003801322.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR002410:IPR005945:IPR000073; KEGG: cdl:CDR20291_2876 proline iminopeptidase; PFAM: alpha/beta hydrolase fold; PRIAM: Prolyl aminopeptidase; SPTR: C2D6W0 Prolyl aminopeptidase; TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold; TIGRFAM: proline-specific peptidases, Bacillus coagulans-type subfamily
YP_003801323.1	COGs: COG4947 conserved hypothetical protein; InterPro IPR000801; KEGG: lba:Lebu_1199  esterase; PFAM:  esterase; SPTR: C9KL17  esterase; PFAM:  esterase
YP_003801324.1	COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); InterProIPR001357:IPR012340:IPR001679:IPR018239:IPR 013839:IPR004150:IPR004149:IPR000445:IPR013840:IPR010994:I PR016027; KEGG: apv:Apar_1111 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; zinc-finger NAD-dependent DNA ligase C4-type; helix-hairpin-helix motif; BRCT domain protein; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase ; BRCT domain protein; SPTR: C8W7U8 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; NAD-dependent DNA ligase C4 zinc finger domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent
YP_003801325.1	COGs: COG0692 Uracil DNA glycosylase; InterPro IPR005122:IPR018085; KEGG: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; SPTR: C2D8P4 Uracil-DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase
YP_003801326.1	COGs: COG2217 Cation transport ATPase; InterProIPR006121:IPR001757:IPR000695:IPR006403:IPR 006416:IPR001969:IPR018303:IPR017969:IPR008250:IPR005834; KEGG: apv:Apar_0439 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; SPTR: C8W9T2 Heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_003801327.1	COGs: COG1937 conserved hypothetical protein; InterPro IPR003735; KEGG: apv:Apar_0438 protein of unknown function DUF156; PFAM: protein of unknown function DUF156; SPTR: B9CP33 Copper-sensing transcriptional repressor CsoR; PFAM: Uncharacterised BCR, COG1937
YP_003801328.1	COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478:IPR001940:IPR001254:IPR009003; KEGG: apv:Apar_0433 peptidase S1 and S6 chymotrypsin/Hap; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: C2D6V7  uncharacterized protein; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF)
YP_003801329.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011991:IPR001867:IPR016032; KEGG: apv:Apar_0432  two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; SPTR: C2D6V6 Possible response regulator; PFAM: Transcriptional regulatory protein, C terminal
YP_003801330.1	COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: apv:Apar_0431 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8W9S4 ABC transporter related; PFAM: ABC transporter
YP_003801331.1	COGs: COG0765 ABC-type amino acid transport system permease component; InterProIPR000515:IPR010065:IPR018313:IPR001638:IPR 001320; KEGG: apv:Apar_0430 polar amino acid ABC transporter, inner membrane subunit; PFAM: extracellular solute-binding protein family 3; binding-protein-dependent transport systems inner membrane component; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; SPTR: A4E9B3  uncharacterized protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; Protein of unknown function (DUF2808); Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_003801332.1	COGs: COG0174 Glutamine synthetase; InterPro IPR014746:IPR008147:IPR008146; KEGG: apv:Apar_0428 glutamine synthetase catalytic region; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; SPTR: B9CKZ6 Glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I
YP_003801333.1	KEGG: apv:Apar_0427 hypothetical protein; SPTR: B9CKZ7  uncharacterized protein
YP_003801334.1	COGs: COG0716 Flavodoxins; InterPro IPR008254:IPR001226; KEGG: apv:Apar_0964 flavodoxin/nitric oxide synthase; PFAM: flavodoxin/nitric oxide synthase; SPTR: B9CNP5 Flavodoxin; PFAM: Flavodoxin; TIGRFAM: flavodoxin, short chain
YP_003801335.1	KEGG: apv:Apar_0965 hypothetical protein; SPTR: B9CNP6  uncharacterized protein
YP_003801336.1	COGs: COG0620 Methionine synthase II (cobalamin-independent); InterPro IPR002629; KEGG: apa:APP7_0911 methionine synthase II (cobalamin-independent); PFAM: Methionine synthase vitamin-B12 independent; SPTR: B9CLD7 Methionine synthase II; PFAM: Cobalamin-independent synthase, Catalytic domain
YP_003801337.1	InterPro IPR003838; KEGG: shi:Shel_01820 ABC-type transport system, involved in lipoprotein release, permease component; PFAM: protein of unknown function DUF214; SPTR: C7N1G1 ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease
YP_003801338.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: shi:Shel_01810 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C7N1G0 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter
YP_003801339.1	COGs: COG2217 Cation transport ATPase; InterProIPR001757:IPR006416:IPR018303:IPR000150:IPR 008250:IPR005834; KEGG: apv:Apar_0966 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: B9CNP7 Cation transport ATPase, HAD family; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_003801340.1	KEGG: apv:Apar_0967 hypothetical protein; SPTR: B9CNP8  uncharacterized protein
YP_003801341.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR012287:IPR000005:IPR009057; KEGG: ccu:Ccur_12970 DNA-binding domain-containing protein, AraC-type; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C7ML28 DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_003801343.1	COGs: COG0370 Fe2+ transport system protein B; InterProIPR005225:IPR003373:IPR002917:IPR011619:IPR 011642:IPR011640; KEGG: apv:Apar_0971 ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; Ferrous iron transport B domain protein; SPTR: C8W7G0 Ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain
YP_003801344.1	COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167; KEGG: apv:Apar_0972 FeoA family protein; PFAM: FeoA family protein; SPTR: B9CNQ3 Conserved domain protein; PFAM: FeoA domain
YP_003801345.1	InterPro IPR007167; KEGG: apv:Apar_0973 FeoA family protein; PFAM: FeoA family protein; SPTR: C8W7G2 FeoA family protein; PFAM: FeoA domain
YP_003801346.1	COGs: COG2352 phosphoenolpyruvate carboxylase; InterPro IPR001449:IPR015813:IPR018129; KEGG: apv:Apar_0974 phosphoenolpyruvate carboxylase; PFAM: phosphoenolpyruvate carboxylase; PRIAM: phosphoenolpyruvate carboxylase; SPTR: C2D8Y0 Possible phosphoenolpyruvate carboxylase; PFAM: phosphoenolpyruvate carboxylase
YP_003801347.1	InterPro IPR017871; KEGG: ele:Elen_0415 polysaccharide biosynthesis protein; SPTR: B6G9R6  uncharacterized protein; PFAM: Polysaccharide biosynthesis protein
YP_003801348.1	COGs: COG1929 Glycerate kinase; InterPro IPR018193:IPR004381; KEGG: shi:Shel_24350 glycerate kinase; PFAM: glycerate kinase; PRIAM: Glycerate kinase; SPTR: A5ZUA3  uncharacterized protein; TIGRFAM: glycerate kinase; PFAM: Glycerate kinase family; TIGRFAM: glycerate kinase
YP_003801349.1	InterPro IPR005135; KEGG: ccu:Ccur_12480 endonuclease/exonuclease/phosphatase family protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: C2D7G1  uncharacterized protein; PFAM: Endonuclease/Exonuclease/phosphatase family
YP_003801350.1	COGs: COG0695 Glutaredoxin and related protein; InterPro IPR002109:IPR012335:IPR012336; KEGG: apv:Apar_0976 glutaredoxin; PFAM: glutaredoxin; SPTR: B9CNQ8 Glutaredoxin; PFAM: Glutaredoxin
YP_003801351.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003439:IPR017940:IPR017871:IPR001140:IPR 003593:IPR011527; KEGG: apv:Apar_0422 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: B9CL00 Lipid A export ATP-binding/permease protein MsbA; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003801352.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003439:IPR017940:IPR000209:IPR017871:IPR 001140:IPR003593:IPR011527; KEGG: apv:Apar_0421 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C8W9R4 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003801353.1	InterPro IPR001387:IPR010982; KEGG: eel:EUBELI_00647 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C0FQ24  uncharacterized protein; PFAM: Helix-turn-helix
YP_003801354.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: lrh:LGG_02318 ABC transporter, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A4EAB0  uncharacterized protein; PFAM: ABC transporter
YP_003801355.1	COGs: COG0173 Aspartyl-tRNA synthetase; InterProIPR006195:IPR002312:IPR012340:IPR004524:IPR 004365:IPR004364:IPR004115:IPR016027; KEGG: apv:Apar_0420 aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; SPTR: A4E8U2  uncharacterized protein; TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type
YP_003801356.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: apv:Apar_0228 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: B9CN04  ABC export system, membrane fusion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003801357.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: apv:Apar_0229 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B9CN03 Macrolide export ATP-binding/permease protein MacB; PFAM: ABC transporter
YP_003801358.1	COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: apv:Apar_0230 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: B9CN02 Macrolide export ATP-binding/permease protein MacB; PFAM: Predicted permease
YP_003801359.1	COGs: COG0546 phosphatase; InterPro IPR005833:IPR006402:IPR006439:IPR005834; KEGG: apv:Apar_0414 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C6LDY3 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; 2-phosphoglycolate phosphatase, prokaryotic
YP_003801360.1	KEGG: apv:Apar_0412 hypothetical protein; SPTR: C8W9Q5  uncharacterized protein
YP_003801361.1	COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterProIPR017896:IPR017900:IPR001450:IPR004108:IPR 009016; KEGG: apv:Apar_0411 ferredoxin hydrogenase; PFAM: hydrogenase large subunit domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: Ferredoxin hydrogenase; SPTR: B9CL07 Hydrogenase large subunit domain protein; PFAM: Iron only hydrogenase large subunit, C-terminal domain; 4Fe-4S binding domain
YP_003801362.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006224:IPR006145:IPR020103; KEGG: apv:Apar_0410 pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: B9CL08 Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_003801363.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR011991:IPR005119; KEGG: apv:Apar_0409 transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: B9CL09 Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_003801364.1	COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461; KEGG: apv:Apar_0408 Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like; SPTR: B9CL10 Na+/H+ antiporter nhac; PFAM: Na+/H+ antiporter family; TIGRFAM: Na+/H+ antiporter NhaC
YP_003801365.1	COGs: COG0124 Histidyl-tRNA synthetase; InterProIPR006195:IPR004154:IPR015807:IPR002314:IPR 004516; KEGG: apv:Apar_0403 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; PRIAM: Histidine--tRNA ligase; SPTR: B9CL12 Histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase
YP_003801366.1	COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR017590:IPR003767; KEGG: sca:Sca_2053  ureidoglycolate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; SPTR: A8RX28  uncharacterized protein; TIGRFAM: ureidoglycolate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; TIGRFAM: ureidoglycolate dehydrogenase
YP_003801367.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR005786:IPR001544; KEGG: ccu:Ccur_08670 branched-chain amino acid aminotransferase, group II; PFAM: aminotransferase class IV; SPTR: C2D792 Branched-chain-amino-acid transaminase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II
YP_003801368.1	COGs: COG1827 small molecule binding protein (contains 3H domain); InterPro IPR011991:IPR004173:IPR013196; KEGG: eel:EUBELI_01428 hypothetical protein; PFAM: 3H domain protein; Helix-turn-helix type 11 domain protein; SPTR: A8RU68  uncharacterized protein; PFAM: HTH domain; 3H domain
YP_003801369.1	COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR013785:IPR004393:IPR002638; KEGG: eel:EUBELI_01429 nicotinate-nucleotide pyrophosphorylase (carboxylating); PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: C4Z1R1 Nicotinate-nucleotide pyrophosphorylase (Carboxylating); TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase
YP_003801370.1	COGs: COG0029 Aspartate oxidase; InterPro IPR003953; KEGG: eel:EUBELI_01430 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: C7G7P5 L-aspartate oxidase; PFAM: FAD binding domain
YP_003801371.1	COGs: COG0379 Quinolinate synthase; InterPro IPR003473; KEGG: eel:EUBELI_01431 quinolinate synthase; PFAM: Quinolinate synthetase A; SPTR: A4EA29  uncharacterized protein; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit
YP_003801372.1	InterPro IPR008278; KEGG: gvi:gll1951 phosphopantetheinyltransferase family protein; SPTR: Q56H94 Aur1L; PFAM: 4'-phosphopantetheinyl transferase superfamily
YP_003801373.1	COGs: COG1392 phosphate transport regulator (distant homolog of PhoU); InterPro IPR018445; KEGG: apv:Apar_0386 protein of unknown function DUF47; PFAM: Putitive phosphate transport regulator; SPTR: C2D781 Possible phosphate transport regulator; PFAM: Protein of unknown function DUF47
YP_003801374.1	COGs: COG0306 phosphate/sulphate permease; InterPro IPR001204; KEGG: apv:Apar_0385 phosphate transporter; PFAM: phosphate transporter; SPTR: C2D780 PiT family inorganic phosphate transporter; PFAM: phosphate transporter family
YP_003801375.1	COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR010140:IPR004013:IPR016195; KEGG: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SPTR: C5EST2  uncharacterized protein; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family
YP_003801376.1	COGs: COG1621 Beta-fructosidase (levanase/invertase); InterPro IPR013148:IPR013189:IPR001362:IPR008985; KEGG: bhy:BHWA1_00077 beta-fructosidase (levanase/invertase); PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; SPTR: B9CM48 Sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolases family 32 C terminal; Glycosyl hydrolases family 32 N-terminal domain
YP_003801377.1	KEGG: pag:PLES_01671  transporter; SPTR: Q9I6W6 Probable transporter
YP_003801378.1	KEGG: shi:Shel_02770 ATPase; SPTR: A4E8B9  uncharacterized protein
YP_003801379.1	KEGG: smd:Smed_4972 dehydratase; SPTR: A5ZRB8  uncharacterized protein
YP_003801380.1	COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR013460:IPR018211:IPR001670; KEGG: ere:EUBREC_1091 L-1,2-propanediol oxidoreductase; PFAM: iron-containing alcohol dehydrogenase; SPTR: A4EAG8  uncharacterized protein; TIGRFAM: lactaldehyde reductase; PFAM: Iron-containing alcohol dehydrogenase; TIGRFAM: lactaldehyde reductase
YP_003801381.1	COGs: COG0434 TIM-barrel enzyme; InterPro IPR005137; KEGG: msm:MSMEG_3114 hypothetical protein; PFAM: photosystem I assembly BtpA; SPTR: C0D1F9  uncharacterized protein; PFAM: BtpA family; TIGRFAM: conserved hypothetical protein TIGR00259
YP_003801382.1	COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: A7B110  uncharacterized protein; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain
YP_003801383.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011663; KEGG: phophonate C-P lyase system transcriptional regulator PhnF, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C4G2Z5  uncharacterized protein; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003801384.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011663; KEGG: phophonate C-P lyase system transcriptional regulator PhnF, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C0D733  uncharacterized protein; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003801385.1	COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: tle:Tlet_0148 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: C0D1G5  uncharacterized protein; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: conserved hypothetical protein TIGR00149
YP_003801386.1	COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: sto:ST1804 hypothetical protein; PFAM: amidohydrolase 2; SPTR: C0D1G6  uncharacterized protein; PFAM: Amidohydrolase
YP_003801387.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: eoi:ECO111_4182  isomerase; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C4G2Z1  uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel
YP_003801388.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611; KEGG: ctu:Ctu_38900 fructoselysine kinase; PFAM: PfkB domain protein; SPTR: C0D1G9  uncharacterized protein; PFAM: pfkB family carbohydrate kinase
YP_003801389.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611; KEGG: ssn:SSON_3505 fructoselysine 6-kinase; PFAM: PfkB domain protein; SPTR: C4G2Z4  uncharacterized protein; PFAM: pfkB family carbohydrate kinase
YP_003801390.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002139:IPR011611; KEGG: ypi:YpsIP31758_0349  ribokinase; PFAM: PfkB domain protein; PRIAM: Ribokinase; SPTR: C0CUV6  uncharacterized protein; PFAM: pfkB family carbohydrate kinase
YP_003801391.1	COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR013785:IPR002220; KEGG: mes:Meso_0941 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: A7B101  uncharacterized protein; PFAM: Dihydrodipicolinate synthetase family
YP_003801392.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002139:IPR002173:IPR011611; KEGG: aca:ACP_3481 ribokinase; PFAM: PfkB domain protein; SPTR: A7B105  uncharacterized protein; PFAM: pfkB family carbohydrate kinase
YP_003801393.1	COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148; KEGG: sss:SSUSC84_0197 glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; SPTR: A7B106  uncharacterized protein; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
YP_003801394.1	COGs: COG0531 Amino acid transporter; InterPro IPR004841:IPR002293; KEGG: ecx:EcHS_A3566  fructoselysine transporter; PFAM: amino acid permease-associated region; SPTR: C0CUU7  uncharacterized protein; PFAM: Amino acid permease
YP_003801395.1	COGs: COG0627 esterase; InterPro IPR000801; KEGG: gym:GYMC10_5948  esterase; PFAM:  esterase; SPTR: B4D0X0  esterase; PFAM:  esterase
YP_003801396.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: smd:Smed_5464 xylose isomerase domain-containing protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C4G2Z7  uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel
YP_003801397.1	COGs: COG2222 phosphosugar isomerase; InterPro IPR001347; KEGG: lwe:lwe2018 sugar isomerase domain-containing protein; PFAM: sugar isomerase (SIS); SPTR: B6FT33  uncharacterized protein; PFAM: SIS domain
YP_003801398.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347:IPR002198:IPR016040; KEGG: nar:Saro_2473 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A7B102  uncharacterized protein; PFAM: short chain dehydrogenase
YP_003801399.1	COGs: COG1482 phosphomannose isomerase; InterPro IPR014710:IPR001412:IPR016847:IPR011051; KEGG: lmc:Lm4b_02168 mannose-6-phosphate isomerase; SPTR: C1KX97  mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I
YP_003801400.1	InterPro IPR014710:IPR010551:IPR011051; KEGG: glucose-6-phosphate isomerase-like protein; PFAM: glucose-6-phosphate isomerase; SPTR: C0D3K3  uncharacterized protein; PFAM: Glucose-6-phosphate isomerase (GPI)
YP_003801402.1	COGs: COG1072 Panthothenate kinase; KEGG: vfm:VFMJ11_A0090  fructose transport system kinase; SPTR: C9QH85  uncharacterized protein
YP_003801403.1	KEGG: gur:Gura_2236 polysaccharide export protein; SPTR: A5G3Q1 Polysaccharide export protein
YP_003801404.1	KEGG: YALI0B07095p; SPTR: Q2HHC0  uncharacterized protein
YP_003801405.1	COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR007553:IPR000845; KEGG: apv:Apar_0977 protein of unknown function DUF523; PFAM: protein of unknown function DUF523; purine or other phosphorylase family 1; PRIAM: Purine-nucleoside phosphorylase; SPTR: B9CNR2 Purine nucleoside phosphorylase 1; PFAM: Protein of unknown function (DUF523); phosphorylase superfamily; TIGRFAM: inosine guanosine and xanthosine phosphorylase family
YP_003801406.1	KEGG: amt:Amet_2238 hypothetical protein; SPTR: C2LTH1  uncharacterized protein
YP_003801407.1	InterPro IPR007076; KEGG: shi:Shel_25930 regulator of competence-specific genes; PFAM: TfoX domain protein; SPTR: C7N2U0 Regulator of competence-specific genes; PFAM: TfoX N-terminal domain
YP_003801408.1	InterPro IPR014942; KEGG: ele:Elen_3086 domain of unknown function DUF1814; PFAM: Domain of unknown function DUF1814; SPTR: C2BRV8  uncharacterized protein; PFAM: Domain of unknown function (DUF1814)
YP_003801409.1	KEGG: ele:Elen_3085 hypothetical protein; SPTR: C2BRV9  uncharacterized protein
YP_003801410.1	KEGG: apv:Apar_0978 hypothetical protein; SPTR: B9CNR3  uncharacterized protein
YP_003801411.1	KEGG: apv:Apar_0979 hypothetical protein; SPTR: B9CNR4  uncharacterized protein
YP_003801412.1	COGs: COG1432 conserved hypothetical protein; InterPro IPR002790; KEGG: apv:Apar_0980 protein of unknown function DUF88; PFAM: protein of unknown function DUF88; SPTR: C8W7G9  uncharacterized protein; PFAM: Protein of unknown function DUF88; TIGRFAM: conserved hypothetical protein TIGR00288
YP_003801413.1	KEGG: msm:MSMEG_5556 MFS permease; SPTR: C2D8Z0  uncharacterized protein
YP_003801414.1	COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR016040:IPR013328:IPR006115:IPR008927; KEGG: apv:Apar_0981 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; PRIAM: 3-hydroxyisobutyrate dehydrogenase; SPTR: B9CNR6 6-phosphogluconate dehydrogenase NAD-binding; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase
YP_003801415.1	COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: apv:Apar_0982 DegV family protein; PFAM: DegV family protein; SPTR: C2D8Z2 Possible spore protein YitS; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family
YP_003801416.1	COGs: COG1544 Ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: apv:Apar_0983 sigma 54 modulation protein/ribosomal protein S30EA; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; SPTR: C2D8Z3 Possible ribosome-associated inhibitor A; TIGRFAM: ribosomal subunit interface protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein
YP_003801417.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: apv:Apar_0984 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C2D900  uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_003801418.1	COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: apv:Apar_0985 amidophosphoribosyltransferase-like protein; PFAM: phosphoribosyltransferase; SPTR: B9CNS0 Amidophosphoribosyltransferase family protein; PFAM: phosphoribosyl transferase domain; TIGRFAM: comF family protein
YP_003801419.1	COGs: COG0084 Mg-dependent DNase; InterPro IPR001130:IPR012278; KEGG: apv:Apar_1083 TatD-related deoxyribonuclease; PFAM: TatD-related deoxyribonuclease; SPTR: B9CNT8 Hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family
YP_003801420.1	COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR011530:IPR020596:IPR001737:IPR020598; KEGG: apv:Apar_1084 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase-like; SPTR: B9CNT9 Dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase
YP_003801421.1	COGs: COG0143 Methionyl-tRNA synthetase; InterProIPR014758:IPR014729:IPR002304:IPR015413:IPR 009080; KEGG: apv:Apar_1085 methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); SPTR: A4E9N7  uncharacterized protein; TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetases class I (M); Anticodon-binding domain; TIGRFAM: methionyl-tRNA synthetase
YP_003801422.1	COGs: COG2365 Protein tyrosine/serine phosphatase; InterPro IPR000387:IPR016130; KEGG: lrh:LGG_02220 protein tyrosine phosphatase; SPTR: B9YBP6  uncharacterized protein
YP_003801423.1	COGs: COG0313 methyltransferase; InterPro IPR014777:IPR008189:IPR018063:IPR000878; KEGG: apv:Apar_1087 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: C8W7S4 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: conserved hypothetical protein TIGR00096
YP_003801424.1	COGs: COG2730 Endoglucanase; InterPro IPR013781:IPR017853; KEGG: apv:Apar_1088 glucan 1,3-beta-glucosidase; SPTR: B9CNU2 Glucan 1,3-beta-glucosidase; PFAM: Cellulase (glycosyl hydrolase family 5)
YP_003801425.1	KEGG: avi:Avi_2955 histidinol-phosphate aminotransferase; SPTR: B9JYA2 Histidinol-phosphate aminotransferase
YP_003801426.1	COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: apv:Apar_1090 PSP1 domain protein; PFAM: PSP1 domain protein; SPTR: C8W7S7 PSP1 domain protein; PFAM: PSP1 C-terminal conserved region
YP_003801427.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: apv:Apar_1091 DNA-directed DNA polymerase; PRIAM: DNA-directed DNA polymerase; SPTR: B9CNU5 DNA polymerase III subunits gamma and tau; TIGRFAM: DNA polymerase III, delta' subunit
YP_003801428.1	COGs: COG0125 Thymidylate kinase; InterPro IPR018094:IPR018095:IPR000062; KEGG: apv:Apar_1092 thymidylate kinase; PFAM: thymidylate kinase; PRIAM: dTMP kinase; SPTR: C8W7S9 Thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase
YP_003801429.1	COGs: COG0550 Topoisomerase IA; InterProIPR000380:IPR013826:IPR013824:IPR006171:IPR 013497:IPR013498:IPR006154:IPR003601:IPR003602; KEGG: apv:Apar_1093 DNA topoisomerase type IA central domain protein; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; SPTR: B9CNU7 DNA topoisomerase 1; PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, archaeal
YP_003801430.1	COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR002033:IPR019822; KEGG: apv:Apar_1094 sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; SPTR: C2D914 Possible Sec-independent protein translocase TatC; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC
YP_003801431.1	InterPro IPR003998:IPR003369; KEGG: apv:Apar_1095 sec-independent translocation protein MttA/Hcf106; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: B9CNU9 MttA/Hcf106 family protein; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family
YP_003801432.1	InterPro IPR002645:IPR003658; KEGG: apv:Apar_1096 anti-sigma-factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: C8W7T3 Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_003801433.1	InterPro IPR019734:IPR013026:IPR011990:IPR013105; KEGG: apv:Apar_1097 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; SPTR: C2D917  uncharacterized protein
YP_003801434.1	COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR015421:IPR015424; KEGG: apv:Apar_1098  transcriptional regulator, GntR family; SPTR: B9CNV2 Transcriptional regulator
YP_003801435.1	COGs: COG3004 Na+/H+ antiporter; InterPro IPR004670; KEGG: apv:Apar_1101 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; SPTR: B9CNV4 Na+/H+ antiporter NhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA
YP_003801436.1	COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase; InterPro IPR001667; KEGG: shi:Shel_16310 inorganic pyrophosphatase/exopolyphosphatase; PFAM: phosphoesterase RecJ domain protein; PRIAM: Inorganic diphosphatase; SPTR: B6G7H9  uncharacterized protein; PFAM: DHH family; DHHA2 domain
YP_003801437.1	InterPro IPR014975; KEGG: ele:Elen_1942 domain of unknown function DUF1836; PFAM: Domain of unknown function DUF1836; SPTR: B1C6N5  uncharacterized protein; PFAM: Domain of unknown function (DUF1836)
YP_003801438.1	COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: apv:Apar_1102 DegV family protein; PFAM: DegV family protein; SPTR: C2D921 DegV family protein; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family
YP_003801439.1	COGs: COG1854 LuxS protein involved in autoinducer AI2 synthesis; InterPro IPR003815:IPR011249; KEGG: ccu:Ccur_11080 LuxS protein involved in autoinducer AI2 synthesis; PFAM: LuxS protein; PRIAM: S-ribosylhomocysteine lyase; SPTR: B6G7Y3  uncharacterized protein; PFAM: S-Ribosylhomocysteinase (LuxS)
YP_003801440.1	COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; InterPro IPR005251:IPR011559:IPR000649; KEGG: cpy:Cphy_2033 aIF-2BI family translation initiation factor; PFAM: initiation factor 2B related; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; SPTR: A9KIE9 Methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase
YP_003801441.1	COGs: COG0813 Purine-nucleoside phosphorylase; InterPro IPR004402:IPR000845; KEGG: cpy:Cphy_0752 purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; SPTR: B7AMZ8  uncharacterized protein; TIGRFAM: purine nucleoside phosphorylase; PFAM: phosphorylase superfamily; TIGRFAM: purine-nucleoside phosphorylase, family 1 (deoD)
YP_003801442.1	COGs: COG1443 Isopentenyldiphosphate isomerase; InterPro IPR000086:IPR011876:IPR015797; KEGG: shi:Shel_24100 isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX hydrolase; PRIAM: Isopentenyl-diphosphate Delta-isomerase; SPTR: C0CJH6  uncharacterized protein; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1
YP_003801443.1	KEGG: mta:Moth_0100 hypothetical protein; SPTR: C0D6N7  uncharacterized protein
YP_003801444.1	COGs: COG0775 Nucleoside phosphorylase; InterPro IPR010049:IPR000845; KEGG: ccu:Ccur_11070 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1; PRIAM: Adenosylhomocysteine nucleosidase; SPTR: C7MPF7 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; TIGRFAM: MTA/SAH nucleosidase; PFAM: phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
YP_003801445.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR011991:IPR005119; KEGG: pth:PTH_1546 transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C5UWF0 Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_003801446.1	COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; InterPro IPR003382:IPR004507; KEGG: stt:t2822 decarboxylase; PFAM: flavoprotein; SPTR: C0C544  uncharacterized protein; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases
YP_003801447.1	COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR001898; KEGG: lpj:JDM1_2359 transport protein; PFAM: sodium/sulphate symporter; SPTR: Q88TK3 Transport protein; PFAM: Sodium:sulfate symporter transmembrane region
YP_003801448.1	KEGG: ses:SARI_00034 hypothetical protein; SPTR: Q4R102 4-hydroxybenzoate decarboxylase subunit D
YP_003801449.1	COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: mta:Moth_0381 carboxylyase-like protein; PFAM: Carboxylyase-related protein; SPTR: Q9S4M7 4-hydroxybenzoate decarboxylase subunit C; TIGRFAM: UbiD family decarboxylase; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases
YP_003801450.1	COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685:IPR010920:IPR011014; KEGG: apv:Apar_0383 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: B9CL34 Transporter, small conductance mechanosensitive ion channel (MscS) family; PFAM: Mechanosensitive ion channel
YP_003801451.1	COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016:IPR014017:IPR000212; KEGG: apv:Apar_0382 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: C8W9M5 UvrD/REP helicase; PFAM: UvrD/REP helicase
YP_003801452.1	COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: eel:EUBELI_00361 hypothetical protein; PFAM: cation efflux protein; SPTR: B6G966  uncharacterized protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_003801453.1	KEGG: hypothetical protein; SPTR: A4RJX6  uncharacterized protein
YP_003801454.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR012287:IPR000005:IPR009057; KEGG: ele:Elen_0308 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C8WKJ2 Transcriptional regulator, AraC family
YP_003801455.1	InterPro IPR011733; KEGG: ele:Elen_0309 hypothetical protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein; SPTR: C8WKJ3  uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185
YP_003801456.1	KEGG: ele:Elen_0310 hypothetical protein; SPTR: C8WKJ4  uncharacterized protein; PFAM: Cobalt transport protein
YP_003801457.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR017871:IPR003593; KEGG: ele:Elen_0311 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8WKJ5 ABC transporter related; PFAM: ABC transporter
YP_003801458.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003439:IPR017940:IPR017871:IPR001140:IPR 003593:IPR011527; KEGG: ele:Elen_0316 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C8WKK0 ABC transporter related; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003801459.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003439:IPR017940:IPR017871:IPR003593:IPR 011527; KEGG: ele:Elen_0317 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8WKK1 ABC transporter related; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003801460.1	COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: cbl:CLK_2789 hypothetical protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; SPTR: B0G284  uncharacterized protein; PFAM: Transglutaminase-like superfamily
YP_003801461.1	COGs: COG3839 ABC-type sugar transport systems ATPase components; InterProIPR003439:IPR017871:IPR013611:IPR003593:IPR 008995; KEGG: apv:Apar_0607 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C0EX82  uncharacterized protein; PFAM: ABC transporter; TOBE domain
YP_003801462.1	COGs: COG1640 4-alpha-glucanotransferase; InterPro IPR013781:IPR003385:IPR017853; KEGG: amt:Amet_1677 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; PRIAM: 4-alpha-glucanotransferase; SPTR: C0ECJ1  uncharacterized protein; TIGRFAM: 4-alpha-glucanotransferase; PFAM: 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase
YP_003801463.1	COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: apv:Apar_0606 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A5Z9N6  uncharacterized protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003801464.1	COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: apv:Apar_0605 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C0EX80  uncharacterized protein; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003801465.1	COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR017909:IPR006311:IPR006059; KEGG: blj:BLD_1505 MalE-type ABC sugar transport system periplasmic component; PFAM: extracellular solute-binding protein family 1; SPTR: A5Z9N4  uncharacterized protein; PFAM: Bacterial extracellular solute-binding protein
YP_003801466.1	COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR000209:IPR001761:IPR010982; KEGG: cbe:Cbei_0863 alanine racemase; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; SPTR: C5RGX6 Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family
YP_003801467.1	COGs: COG0366 Glycosidase; InterPro IPR013781:IPR006047:IPR006589:IPR017853; KEGG: lpj:JDM1_0168 alpha-amylase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: C4FWA8  uncharacterized protein; PFAM: Alpha amylase, catalytic domain
YP_003801468.1	COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterProIPR016100:IPR016099:IPR010048:IPR018483:IPR 004137:IPR011254; KEGG: apv:Apar_0742 hybrid cluster protein; PFAM: Prismane; SPTR: C8WAN3 Hybrid cluster protein; TIGRFAM: hybrid cluster protein; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: hydroxylamine reductase
YP_003801469.1	COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: bad:BAD_0579 ATP-binding protein of ABC transporter for glutamate; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B6G855  uncharacterized protein; PFAM: ABC transporter
YP_003801470.1	COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515:IPR010065; KEGG: ctt:CtCNB1_1867 amino acid ABC transporter, permease protein PEB1; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B6G854  uncharacterized protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_003801471.1	COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515:IPR010065; KEGG: aav:Aave_3755 polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A4E957  uncharacterized protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_003801472.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: dac:Daci_4387 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C4FBR7  uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_003801473.1	COGs: COG1968 Uncharacterized bacitracin resistance protein; InterPro IPR003824; KEGG: apv:Apar_0381 undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; PRIAM: Undecaprenyl-diphosphatase; SPTR: C8W9M4 Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP
YP_003801474.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015:IPR014729:IPR006016; KEGG: shi:Shel_19770 universal stress protein UspA-like protein; PFAM: UspA domain protein; SPTR: A4EC26  uncharacterized protein; PFAM: Universal stress protein family
YP_003801475.1	COGs: COG0697 Permease of the drug/metabolite transporter (DMT) superfamily; InterPro IPR016160:IPR000620; KEGG: apv:Apar_0379 protein of unknown function DUF6 transmembrane; PFAM: protein of unknown function DUF6 transmembrane; SPTR: C2D932 DMT superfamily drug/metabolite transporter; PFAM: EamA-like transporter family
YP_003801476.1	COGs: COG1026 Zn-dependent peptidase insulinase-like; InterProIPR011237:IPR011765:IPR007863:IPR013578:IPR 011249; KEGG: apv:Apar_0378 peptidase M16C associated domain protein; PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; SPTR: B9CNS2 Zn-dependent peptidase, insulinase family; PFAM: Peptidase M16C associated; Peptidase M16 inactive domain; Insulinase (Peptidase family M16); TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
YP_003801477.1	COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR000150:IPR006379:IPR013200; KEGG: Cof-like hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: C2D937 Possible HAD hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB
YP_003801478.1	COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR005144:IPR012833:IPR001150; KEGG: apv:Apar_1124 anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; formate C-acetyltransferase glycine radical; PRIAM: Ribonucleoside-triphosphate reductase; SPTR: C2D935 Possible ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: Glycine radical; ATP cone domain; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase
YP_003801479.1	COGs: COG0602 Organic radical activating protein; InterPro IPR012837:IPR001989; KEGG: apv:Apar_1123 anaerobic ribonucleoside-triphosphate reductase activating protein; SPTR: C2D934 [formate-C-acetyltransferase]-activating enzyme; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein
YP_003801480.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR004358:IPR003594:IPR003661:IPR 009082; KEGG: ccu:Ccur_00270 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: A4EC11 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003801481.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterProIPR001789:IPR011991:IPR005829:IPR001867:IPR 011006; KEGG: ccu:Ccur_00280 response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C7MLF5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003801482.1	KEGG: ccu:Ccur_00290 UBA/Ts-N domain-containing protein; SPTR: C7MLF6 UBA/TS-N domain-containing protein
YP_003801483.1	COGs: COG1521  transcriptional regulator protein; InterPro IPR004619; KEGG: ele:Elen_1724  transcriptional acitvator, Baf family; PFAM: Bvg accessory factor; SPTR: C4FCD7  uncharacterized protein; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III
YP_003801484.1	COGs: COG1297 membrane protein; InterPro IPR004813; KEGG: ele:Elen_1725 oligopeptide transporter, OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily protein; SPTR: A4E981  uncharacterized protein; TIGRFAM: oligopeptide transporters, OPT superfamily; PFAM: OPT oligopeptide transporter protein; TIGRFAM: oligopeptide transporters, OPT superfamily; oligopeptide transporter, OPT family
YP_003801485.1	InterPro IPR000415; KEGG: ccu:Ccur_06530 nitroreductase family protein; PFAM: nitroreductase; SPTR: C0E9N3  uncharacterized protein; PFAM: Nitroreductase family
YP_003801486.1	InterPro IPR000253:IPR008984; KEGG: afo:Afer_0091 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: B6G9B8  uncharacterized protein; PFAM: FHA domain
YP_003801487.1	KEGG: mxa:MXAN_6960 chemotaxis protein methyltransferase CheR; SPTR: B6G9B7  uncharacterized protein
YP_003801488.1	InterPro IPR001647:IPR012287:IPR009057; KEGG: tde:TDE0339 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C4G3A8  uncharacterized protein; PFAM: Bacterial regulatory proteins, tetR family
YP_003801489.1	InterPro IPR011733; KEGG: tde:TDE0284 hypothetical protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein; SPTR: Q73R09 Membrane protein, TIGRFAM: conserved hypothetical protein; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185
YP_003801490.1	COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: tde:TDE0283 transporter, PFAM: cobalt transport protein; SPTR: Q73R10 Transporter, PFAM: Cobalt transport protein
YP_003801491.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR017871:IPR003593; KEGG: tde:TDE0282 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q73R11  ABC transporter ATP-binding protein TDE_0282; PFAM: ABC transporter
YP_003801492.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003439:IPR017940:IPR017871:IPR001140:IPR 003593:IPR011527; KEGG: tde:TDE0274 ABC transporter, ATP-binding/permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C4G3B5  uncharacterized protein; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003801493.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003439:IPR017940:IPR017871:IPR000408:IPR 001140:IPR003593:IPR011527; KEGG: tde:TDE0273 ABC transporter, ATP-binding/permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: Q73R20 ABC transporter, ATP-binding/permease protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003801494.1	KEGG: TMPRSS13; transmembrane protease, serine 13; K09643 transmembrane protease, serine 13; SPTR: B6GAG0  uncharacterized protein (Fragment)
YP_003801495.1	KEGG: shi:Shel_25630 hypothetical protein; SPTR: C7N2R2  uncharacterized protein
YP_003801496.1	KEGG: acp:A2cp1_3940 TPR repeat-containing protein; SPTR: C1DYR9 Predicted protein
YP_003801497.1	KEGG: cth:Cthe_1371 YD repeat-containing protein; SPTR: A3DF74 YD repeat protein
YP_003801498.1	KEGG: bcv:Bcav_2550 chromosome segregation protein SMC; SPTR: C5BWY0 Chromosome segregation protein SMC
YP_003801499.1	KEGG: hypothetical protein LOC100279485; SPTR: B7ZYD6  uncharacterized protein
YP_003801500.1	KEGG: ami:Amir_4442 acyl transferase; SPTR: C6WK75 Acyl transferase
YP_003801501.1	KEGG: GK18647 gene product from transcript GK18647-RA; SPTR: B4NR70 GK18647
YP_003801502.1	InterPro IPR013838; KEGG: GI15407 gene product from transcript GI15407-RA; SPTR: Q15G92 MaSp2a (Fragment)
YP_003801503.1	KEGG: cth:Cthe_0638 FHA domain-containing protein; SPTR: A3DD44 FHA domain containing protein; PFAM: FtsK/SpoIIIE family
YP_003801504.1	KEGG: saq:Sare_3541 TPR repeat-containing protein; SPTR: B9CKW0  uncharacterized protein
YP_003801505.1	InterPro IPR017909:IPR006311; KEGG: paa:Paes_1248 KWG Leptospira repeat protein; SPTR: B4S887 KWG Leptospira repeat protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003801506.1	KEGG: cmi:CMM_0686 hypothetical protein; SPTR: C1YQP7 ABC-type antimicrobial peptide transport system, permease component
YP_003801507.1	KEGG: shi:Shel_25630 hypothetical protein; SPTR: C7N2R2  uncharacterized protein
YP_003801508.1	COGs: COG3209 Rhs family protein; InterPro IPR006530:IPR011044; KEGG: ate:Athe_0346 YD repeat-containing protein; PFAM: YD repeat-containing protein; SPTR: B5CRR6  uncharacterized protein; TIGRFAM: YD repeat protein; PFAM: RHS Repeat; TIGRFAM: YD repeat (two copies)
YP_003801509.1	KEGG: sen:SACE_6782 hypothetical protein; SPTR: A4FPH2  uncharacterized protein
YP_003801510.1	KEGG: cby:CLM_0596 NlpC/P60 family protein; SPTR: C1FSI3 NlpC/P60 family protein
YP_003801511.1	COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR000253:IPR002543:IPR008984; KEGG: cth:Cthe_0638 FHA domain-containing protein; PFAM: cell divisionFtsK/SpoIIIE; Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: B6G9A7  uncharacterized protein; PFAM: FtsK/SpoIIIE family; FHA domain
YP_003801512.1	InterPro IPR010310; KEGG: ere:EUBREC_0571 hypothetical protein; PFAM: protein of unknown function DUF909; SPTR: B6G9A6  uncharacterized protein; PFAM: Proteins of 100 residues with WXG
YP_003801513.1	KEGG: ere:EUBREC_0561 hypothetical protein; SPTR: B6G9A5  uncharacterized protein (Fragment)
YP_003801514.1	KEGG: similar to CG6954-PA; SPTR: B6G9A3  uncharacterized protein
YP_003801515.1	COGs: COG0515 Serine/threonine protein kinase; InterProIPR000719:IPR017441:IPR008271:IPR017442:IPR 020635:IPR002290:IPR011009; KEGG: ere:EUBREC_1114 serine/threonine protein kinase fused to TPR repeats domain; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: C2KXH6  uncharacterized protein; PFAM: Protein kinase domain
YP_003801516.1	KEGG: cbk:CLL_A1798 hypothetical protein; SPTR: C5UUH4  uncharacterized protein; PFAM: Protein of unknown function (DUF2974)
YP_003801517.1	KEGG: bcv:Bcav_1975 conserved membrane-spanning protein; SPTR: C5C5N9 Conserved membrane-spanning protein
YP_003801518.1	KEGG: hypothetical protein; SPTR: Q7SHU4 Predicted protein
YP_003801519.1	KEGG: nph:NP3638A transducer protein htr8; SPTR: C9SMV9  uncharacterized protein
YP_003801520.1	KEGG: scl:sce5864 hypothetical protein; SPTR: A9G8R1 Hypothetical protein
YP_003801521.1	COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804:IPR004429:IPR019818; KEGG: ele:Elen_0585 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: C8WM16 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase
YP_003801522.1	COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR000573:IPR015928:IPR011824:IPR011827; KEGG: ele:Elen_0584 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; SPTR: C8WM15 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit
YP_003801523.1	COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterProIPR001030:IPR015931:IPR015932:IPR011826:IPR 011823:IPR006251:IPR018136; KEGG: ele:Elen_0583 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; SPTR: C8WM14 3-isopropylmalate dehydratase, large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; homoaconitate hydratase family protein; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase family protein
YP_003801524.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterProIPR000891:IPR013709:IPR013785:IPR005671:IPR 002034; KEGG: ele:Elen_1866 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; SPTR: C8WI89 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; TIGRFAM: 2-isopropylmalate synthase, bacterial type
YP_003801525.1	COGs: COG0135 phosphoribosylanthranilate isomerase; InterPro IPR001240:IPR011060:IPR013785; KEGG: cce:Ccel_3217 N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: phosphoribosylanthranilate isomerase; SPTR: C0CQQ2 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YP_003801526.1	COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: hor:Hore_14660 DegV family protein; PFAM: DegV family protein; SPTR: C4FBS4  uncharacterized protein; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family
YP_003801527.1	COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding; InterPro IPR015376:IPR000086:IPR015797:IPR020084; KEGG: shi:Shel_19860 Zn-finger containing NTP pyrophosphohydrolase; PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; SPTR: B5CLJ4  uncharacterized protein; PFAM: NADH pyrophosphatase zinc ribbon domain; NUDIX domain
YP_003801528.1	COGs: COG2017 Galactose mutarotase; InterPro IPR008183:IPR011013:IPR014718:IPR000890; KEGG: rmr:Rmar_0474 aldose 1-epimerase; PFAM: Aldose 1-epimerase; PRIAM: Aldose 1-epimerase; SPTR: A5KK55  uncharacterized protein; PFAM: Aldose 1-epimerase
YP_003801529.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466:IPR012338; KEGG: ele:Elen_1788 beta-lactamase; PFAM: beta-lactamase; SPTR: C8WI12 Beta-lactamase; PFAM: Beta-lactamase
YP_003801530.1	KEGG: mlb:MLBr_00398  D-ribose-binding protein; SPTR: C6JC57  uncharacterized protein
YP_003801531.1	COGs: COG2848 conserved hypothetical protein; InterPro IPR007841; KEGG: apv:Apar_1221 protein of unknown function DUF711; PFAM: protein of unknown function DUF711; SPTR: C8W858  uncharacterized protein; PFAM: Uncharacterized ACR (DUF711)
YP_003801532.1	InterPro IPR012338:IPR018130; KEGG: ele:Elen_2363 hypothetical protein; SPTR: C8WKG4  uncharacterized protein
YP_003801533.1	COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; InterProIPR006094:IPR011601:IPR016166:IPR016167:IPR 016169:IPR003170; KEGG: apv:Apar_0355 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: C2D940 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase
YP_003801534.1	KEGG: bfs:BF3354 hypothetical protein; SPTR: D0TGG4  uncharacterized protein
YP_003801535.1	COGs: COG3601 membrane protein; KEGG: apv:Apar_0354 hypothetical protein; SPTR: B9CNF5  uncharacterized protein; PFAM: Protein of unknown function (DUF1393)
YP_003801536.1	COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: apv:Apar_0353 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B9CNF6  ABC transporter ATP-binding protein; PFAM: ABC transporter; Cobalt ATP-binding cassette C terminal; TIGRFAM: cobalt transport protein ATP-binding subunit
YP_003801537.1	COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: apv:Apar_0352 cobalt transport protein; PFAM: cobalt transport protein; SPTR: B9CNF7 Cobalt ABC transporter permease protein; PFAM: Cobalt transport protein
YP_003801538.1	COGs: COG0046 phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR010918:IPR016188:IPR010141:IPR017926; KEGG: bad:BAD_0523 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; PRIAM: phosphoribosylformylglycinamidine synthase; SPTR: A7A4S1  uncharacterized protein; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase, clade II
YP_003801539.1	COGs: COG4826 Serine protease inhibitor; InterPro IPR000215; KEGG: tte:TTE1560 serine protease inhibitor; PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; SPTR: C0G0A5  uncharacterized protein; PFAM: Serpin (serine protease inhibitor)
YP_003801540.1	COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR001509:IPR016040:IPR005886:IPR008089; KEGG: apv:Apar_0346 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B6G9Y6  uncharacterized protein; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase
YP_003801541.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092:IPR008949; KEGG: ccu:Ccur_03940 geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; SPTR: C4FAP0  uncharacterized protein; PFAM: Polyprenyl synthetase
YP_003801542.1	InterPro IPR002477; KEGG: apv:Apar_0344 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan-binding domain 1 protein; SPTR: C2D948  uncharacterized protein; PFAM:  peptidoglycan binding domain
YP_003801543.1	COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153:IPR004705; KEGG: apv:Apar_1230 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; SPTR: B9CNC1 Sodium/hydrogen exchanger family protein; TIGRFAM: Na+/H+ antiporter; PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form
YP_003801544.1	COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR005835:IPR001451:IPR011004:IPR005882; KEGG: apv:Apar_0343 UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; SPTR: B9CML0 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
YP_003801545.1	COGs: COG0462 phosphoribosylpyrophosphate synthetase; InterPro IPR000836:IPR005946; KEGG: apv:Apar_0342 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: C2D950 Ribose-phosphate diphosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_003801546.1	COGs: COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase); InterPro IPR000816:IPR016125; KEGG: apv:Apar_0340 pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I; PRIAM: Pyroglutamyl-peptidase I; SPTR: B9CMK8 Pyroglutamyl-peptidase I; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: Pyroglutamyl peptidase; TIGRFAM: pyroglutamyl-peptidase I
YP_003801547.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: tde:TDE0358 cinnamoyl ester hydrolase; SPTR: C0EAD6  uncharacterized protein; PFAM: Prolyl oligopeptidase family
YP_003801548.1	COGs: COG0474 Cation transport ATPase; InterProIPR004014:IPR008250:IPR005834:IPR006068:IPR 006415:IPR001757:IPR018303; KEGG: cpy:Cphy_0543 magnesium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: C3X945 Cation-transporting P-ATPase; TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; haloacid dehalogenase-like hydrolase; Cation transporter/ATPase, N-terminus; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase
YP_003801549.1	COGs: COG0193 Peptidyl-tRNA hydrolase; InterPro IPR001328:IPR018171; KEGG: apv:Apar_0339 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: B9CMK5 Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase
YP_003801550.1	COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterProIPR001433:IPR019480:IPR017938:IPR017927:IPR 012165; KEGG: apv:Apar_0338 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR: B9CMK1 Ferredoxin--NADP; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain
YP_003801551.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR013027:IPR009051:IPR012285:IPR006004:IPR 000759; KEGG: apv:Apar_0337 glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A4EBQ4  uncharacterized protein; TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric
YP_003801552.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: eoj:ECO26_3478  oxidoreductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C8NFB1 Oxidoreductase UcpA; PFAM: short chain dehydrogenase
YP_003801553.1	COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR000836:IPR004467; KEGG: ele:Elen_0287 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: A4ED16  uncharacterized protein; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase
YP_003801554.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bcr:BCAH187_A5438 N-acetylglucosaminyltransferase; PFAM: glycosyl transferase family 2; SPTR: C2D956 Glycosyltransferase involved in cell wall biogenesis; PFAM: Glycosyl transferase family 2
YP_003801555.1	KEGG: apv:Apar_1128 hypothetical protein; SPTR: C8W7W6  uncharacterized protein
YP_003801556.1	COGs: COG0101 Pseudouridylate synthase; InterProIPR020097:IPR020103:IPR020094:IPR020095:IPR 001406; KEGG: apv:Apar_1129 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; PRIAM: tRNA-pseudouridine synthase I; SPTR: C8W7W7 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I
YP_003801557.1	COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: ele:Elen_2799 cobalt transport protein; PFAM: cobalt transport protein; SPTR: B6G9D8  uncharacterized protein; PFAM: Cobalt transport protein
YP_003801558.1	COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: apv:Apar_1131 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B9CMR0 Cobalt import ATP-binding protein CbiO; PFAM: ABC transporter; TIGRFAM: cobalt transport protein ATP-binding subunit
YP_003801559.1	COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: apv:Apar_1132 ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: C2D964 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17
YP_003801560.1	COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; InterProIPR011261:IPR011262:IPR011260:IPR009025:IPR 011773:IPR011263; KEGG: apv:Apar_1133 DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; SMART: RNA polymerase RpoA/D/Rpb3-type; SPTR: C2D965 DNA-directed RNA polymerase; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type
YP_003801561.1	COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR001912:IPR002942:IPR005709; KEGG: apv:Apar_1134 ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; SMART: RNA-binding S4 domain protein; SPTR: C8W7X2 Ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type
YP_003801562.1	COGs: COG0100 Ribosomal protein S11; InterPro IPR001971:IPR019981:IPR018102; KEGG: apv:Apar_1135 ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: B9CMR4 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11
YP_003801563.1	COGs: COG0099 Ribosomal protein S13; InterPro IPR001892:IPR010979:IPR019980:IPR018269; KEGG: apv:Apar_1136 ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: C2D968 30S ribosomal protein; TIGRFAM: 30S ribosomal protein S13; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13
YP_003801564.1	InterPro IPR000473:IPR000923; KEGG: apv:Apar_1137 ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: C8W7X5 Ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type
YP_003801565.1	COGs: COG0361 Translation initiation factor 1 (IF-1); InterPro IPR006196:IPR016027:IPR012340:IPR004368; KEGG: apv:Apar_1138 translation initiation factor IF-1; PFAM: S1 IF1 family protein; SPTR: B9CMR7 Translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1
YP_003801566.1	COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR002467:IPR001714; KEGG: apv:Apar_1139 methionine aminopeptidase, type I; PFAM: peptidase M24; SPTR: B9CMR8 Methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I
YP_003801567.1	COGs: COG0563 Adenylate kinase and related kinase; InterPro IPR000850:IPR006259; KEGG: apv:Apar_1140 adenylate kinase; PFAM: adenylate kinase; SPTR: B9CMR9 Adenylate kinase; TIGRFAM: adenylate kinase; PFAM: Adenylate kinase; TIGRFAM: adenylate kinases
YP_003801568.1	COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: apv:Apar_1141 preprotein translocase, SecY subunit; PFAM: SecY protein; SPTR: C2D972 Preprotein translocase secY subunit; TIGRFAM: preprotein translocase, SecY subunit; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit
YP_003801569.1	COGs: COG0200 Ribosomal protein L15; InterPro IPR001196:IPR005749; KEGG: apv:Apar_1142 ribosomal protein L15; PFAM: ribosomal protein L15; SPTR: C8W7Y0 Ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle
YP_003801570.1	InterPro IPR000517:IPR016082:IPR005996; KEGG: apv:Apar_1143 ribosomal protein L30; PFAM: ribosomal protein L30; SPTR: C2D974  uncharacterized protein; TIGRFAM: ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle
YP_003801571.1	COGs: COG0098 Ribosomal protein S5; InterProIPR013810:IPR005324:IPR020568:IPR014720:IPR 014721:IPR005712; KEGG: apv:Apar_1144 ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein; SPTR: C8W7Y2 Ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, N-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type
YP_003801572.1	COGs: COG0256 Ribosomal protein L18; InterPro IPR005484:IPR004389; KEGG: apv:Apar_1145 ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; SPTR: C8W7Y3 Ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type
YP_003801573.1	COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR020040:IPR019906:IPR002358:IPR000702; KEGG: apv:Apar_1146 ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: B9CMS5 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type
YP_003801574.1	COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: apv:Apar_1147 ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: C2D978 Ribosomal protein S8; PFAM: Ribosomal protein S8
YP_003801575.1	COGs: COG0199 Ribosomal protein S14; InterPro IPR001209:IPR018271; KEGG: apv:Apar_1148 ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: C8W7Y6 Ribosomal protein S14; PFAM: Ribosomal protein S14p/S29e
YP_003801576.1	COGs: COG0094 Ribosomal protein L5; InterPro IPR002132; KEGG: apv:Apar_1149 ribosomal protein L5; PFAM: ribosomal protein L5; SPTR: B9CMS7 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5
YP_003801577.1	InterPro IPR011459:IPR013378:IPR011050; KEGG: apv:Apar_0266 cell wall/surface repeat protein; PFAM: Listeria/Bacterioides repeat protein; protein of unknown function DUF1565; SPTR: C8W9A9 Cell wall/surface repeat protein; TIGRFAM: cell wall/surface repeat protein; PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); TIGRFAM: Listeria/Bacterioides repeat
YP_003801578.1	COGs: COG0198 Ribosomal protein L24; InterProIPR005824:IPR008991:IPR014723:IPR003256:IPR 005825; KEGG: apv:Apar_1150 ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; SPTR: B9CL69 Ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle
YP_003801579.1	COGs: COG0093 Ribosomal protein L14; InterPro IPR000218:IPR005745; KEGG: apv:Apar_1151 ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: C2D987 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle
YP_003801580.1	COGs: COG0186 Ribosomal protein S17; InterProIPR000266:IPR016027:IPR012340:IPR019984:IPR 019979; KEGG: apv:Apar_1152 ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: C2D988 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17
YP_003801581.1	InterPro IPR001854; KEGG: apv:Apar_1153 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: C2D989 Ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29
YP_003801582.1	COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR016180:IPR000114:IPR020798; KEGG: apv:Apar_1154 ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: C2D990 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle
YP_003801583.1	COGs: COG0092 Ribosomal protein S3; InterProIPR008282:IPR004044:IPR001351:IPR009019:IPR 015946:IPR005704:IPR004087; KEGG: apv:Apar_1155 ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; SMART: KH domain protein; SPTR: B9CL74 Ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type
YP_003801584.1	COGs: COG0091 Ribosomal protein L22; InterPro IPR001063:IPR005727:IPR018260; KEGG: apv:Apar_1156 ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: C2D992 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type
YP_003801585.1	COGs: COG0185 Ribosomal protein S19; InterPro IPR002222:IPR005732; KEGG: apv:Apar_1157 ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: C2D993 Ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle
YP_003801586.1	COGs: COG0090 Ribosomal protein L2; InterProIPR002171:IPR008991:IPR016027:IPR012340:IPR 014722:IPR005880; KEGG: apv:Apar_1158 ribosomal protein L2; PFAM: ribosomal protein L2; SPTR: C2D994 Ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar
YP_003801587.1	COGs: COG0089 Ribosomal protein L23; InterPro IPR013025:IPR012678:IPR012677:IPR001014; KEGG: apv:Apar_1159 ribosomal protein L25/L23; PFAM: Ribosomal protein L25/L23; SPTR: C2D995 50S ribosomal protein L23; PFAM: Ribosomal protein L23
YP_003801588.1	COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: apv:Apar_1160 ribosomal protein L4/L1e; PFAM: ribosomal protein L4/L1e; SPTR: C2D996 Ribosomal protein L4; PFAM: Ribosomal protein L4/L1 family
YP_003801589.1	COGs: COG0087 Ribosomal protein L3; InterPro IPR000597:IPR009000:IPR019927:IPR019926; KEGG: apv:Apar_1161 ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: B9CL80 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial
YP_003801590.1	KEGG: pau:PA14_55400 hypothetical protein; SPTR: A4EAB0  uncharacterized protein
YP_003801591.1	KEGG: rsq:Rsph17025_2320 BioY protein; SPTR: Q0AAD3 Integral membrane protein MviN
YP_003801592.1	COGs: COG0051 Ribosomal protein S10; InterPro IPR001848:IPR005731:IPR018268; KEGG: apv:Apar_1163 ribosomal protein S10; PFAM: ribosomal protein S10; SPTR: C8W801 Ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle
YP_003801593.1	COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795:IPR004161:IPR005517:IPR000640:IPR 020568:IPR009000:IPR009022:IPR014721:IPR004540:IPR005225; KEGG: apv:Apar_1164 translation elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein; SPTR: C2D9A4 Elongation factor EF2; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_003801594.1	COGs: COG0049 Ribosomal protein S7; InterPro IPR000235:IPR005717; KEGG: apv:Apar_1165 ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: B9CL86 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle
YP_003801595.1	COGs: COG0048 Ribosomal protein S12; InterPro IPR006032:IPR016027:IPR012340:IPR005679; KEGG: apv:Apar_1166 ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: C2D9A6 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle
YP_003801596.1	InterPro IPR001845:IPR011991:IPR018486; KEGG: bad:BAD_0218 transcription regulator ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C4FGX9  uncharacterized protein; PFAM: Bacterial regulatory protein, arsR family
YP_003801597.1	COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; InterProIPR007080:IPR000722:IPR007066:IPR007083:IPR 007081:IPR011260:IPR012754:IPR006592; KEGG: apv:Apar_1169 DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; RNA polymerase alpha subunit domain protein; SMART: RNA polymerase I subunit A domain protein; SPTR: C2D9B0 DNA-directed RNA polymerase; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form
YP_003801598.1	COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR010243:IPR007121; KEGG: apv:Apar_1170 DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; RNA polymerase Rpb2 domain 3; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; PRIAM: DNA-directed RNA polymerase; SPTR: C2D9B1 DNA-directed RNA polymerase; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit
YP_003801599.1	COGs: COG0222 Ribosomal protein L7/L12; InterPro IPR013823:IPR014719:IPR008932:IPR000206; KEGG: apv:Apar_1171 ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; SPTR: C2D9B2 Ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12
YP_003801600.1	COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: apv:Apar_1172 ribosomal protein L10; PFAM: ribosomal protein L10; SPTR: C2D9B3 Possible ribosomal protein L10; PFAM: Ribosomal protein L10
YP_003801602.1	COGs: COG0081 Ribosomal protein L1; InterPro IPR002143:IPR016094:IPR005878; KEGG: apv:Apar_1173 ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: C2D9B4 Ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast
YP_003801603.1	COGs: COG0080 Ribosomal protein L11; InterProIPR020784:IPR020783:IPR006519:IPR020785:IPR 000911; KEGG: apv:Apar_1174 ribosomal protein L11; PFAM: Ribosomal protein L11-like; SMART: ribosomal protein L11; SPTR: C8W812 Ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11
YP_003801604.1	COGs: COG0250 Transcription antiterminator; InterProIPR006645:IPR008991:IPR014722:IPR001062:IPR 015869:IPR005824; KEGG: apv:Apar_1175 NusG antitermination factor; PFAM: NGN domain protein; SMART: NGN domain protein; KOW domain protein; SPTR: C8W813 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: Transcription termination factor nusG; TIGRFAM: transcription termination/antitermination factor NusG
YP_003801605.1	COGs: COG0690 Preprotein translocase subunit SecE; InterPro IPR001901:IPR005807; KEGG: apv:Apar_1176 preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; SPTR: C2D9B7  uncharacterized protein; TIGRFAM: preprotein translocase, SecE subunit; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial
YP_003801606.1	COGs: COG0267 Ribosomal protein L33; InterPro IPR001705:IPR018264; KEGG: apv:Apar_1177 ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: C2D9B8 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type
YP_003801607.1	COGs: COG0050 GTPase - translation elongation factors; InterProIPR000795:IPR004161:IPR004160:IPR009001:IPR 009000:IPR004541:IPR005225; KEGG: apv:Apar_1178 translation elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain protein; SPTR: C2D9B9 Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_003801608.1	COGs: COG3688 RNA-binding protein containing a PIN domain; InterPro IPR010298; KEGG: apv:Apar_1179 protein of unknown function DUF901; PFAM: protein of unknown function DUF901; SPTR: C8W817  uncharacterized protein; PFAM: Protein of unknown function (DUF901)
YP_003801609.1	COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537:IPR004441; KEGG: apv:Apar_1180 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: B9CLA9 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3
YP_003801610.1	COGs: COG0215 Cysteinyl-tRNA synthetase; InterProIPR015803:IPR015273:IPR009080:IPR014729:IPR 002308; KEGG: apv:Apar_1181 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; SPTR: C8W819 Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase
YP_003801611.1	COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; InterPro IPR003526:IPR020555; KEGG: apv:Apar_1183 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; PRIAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; SPTR: C8W821 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_003801612.1	COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; InterPro IPR001228; KEGG: apv:Apar_1184 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: B9CLB2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_003801613.1	COGs: COG1623 nucleic-acid-binding protein (contains the HHH domain); InterPro IPR003390:IPR018906; KEGG: apv:Apar_1185 protein of unknown function DUF147; PFAM: protein of unknown function DUF147; DNA integrity scanning, DisA, linker region; SPTR: C2D9C5 Possible DNA integrity scanning protein; PFAM: DisA bacterial checkpoint controller nucleotide-binding; DisA bacterial checkpoint controller linker region
YP_003801614.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176:IPR003959:IPR001943:IPR013093:IPR 019489:IPR001270:IPR018368:IPR003593; KEGG: apv:Apar_1186 ATPase AAA-2 domain protein; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: B9CLB4 ClpC ATPase; PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif
YP_003801615.1	COGs: COG2316 hydrolase (HD superfamily); InterPro IPR006675; KEGG: ccu:Ccur_13230 lysyl-tRNA synthetase (class II); SPTR: C7ML54 Lysyl-tRNA synthetase; TIGRFAM: metal dependent phophohydrolase; TIGRFAM: uncharacterized domain HDIG
YP_003801616.1	COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR004365:IPR004364:IPR002547:IPR016027:IPR 012340:IPR002313:IPR006195:IPR018149:IPR002345; KEGG: ele:Elen_2238 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; t-RNA-binding domain protein; PRIAM: Lysine--tRNA ligase; SPTR: B6GB09 Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial
YP_003801617.1	InterPro IPR002035:IPR019948:IPR019931; KEGG: GI17164 gene product from transcript GI17164-RA; PFAM: von Willebrand factor type A; Gram-positive anchor; SPTR: C4G9T2  uncharacterized protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: von Willebrand factor type A domain; TIGRFAM: LPXTG-motif cell wall anchor domain
YP_003801618.1	COGs: COG0782 Transcription elongation factor; InterPro IPR001437:IPR006359:IPR018151; KEGG: apv:Apar_1188 transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; SPTR: C2D9C8 Transcription elongation factor; TIGRFAM: transcription elongation factor GreA; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA
YP_003801619.1	COGs: COG1826 Sec-independent protein secretion pathway components; InterPro IPR003369:IPR006312:IPR003998; KEGG: ele:Elen_2240 twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: C2D9C9  uncharacterized protein; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family
YP_003801620.1	COGs: COG0421 Spermidine synthase; KEGG: apv:Apar_1190 spermidine synthase-like protein; SPTR: C2D9D0  uncharacterized protein
YP_003801621.1	InterPro IPR013096:IPR011051; KEGG: ccu:Ccur_09790 cupin domain-containing protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C7MP30 Cupin domain-containing protein; PFAM: Cupin domain
YP_003801622.1	InterPro IPR013217; KEGG: apv:Apar_0905 methyltransferase type 12; PFAM: Methyltransferase type 12; SPTR: C8W795 Methyltransferase type 12
YP_003801623.1	COGs: COG1243 Histone acetyltransferase; InterPro IPR007197:IPR000182:IPR016181:IPR006638; KEGG: apv:Apar_0906 histone acetyltransferase; PFAM: GCN5-related N-acetyltransferase; Radical SAM domain protein; PRIAM: Histone acetyltransferase; SMART: Elongator protein 3/MiaB/NifB; SPTR: C8W796 Histone acetyltransferase; PFAM: Acetyltransferase (GNAT) family; Radical SAM superfamily; TIGRFAM: histone acetyltransferase, ELP3 family
YP_003801624.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR011527:IPR017940:IPR 017871:IPR005829:IPR003593; KEGG: cdl:CDR20291_0874  ABC transporter, permease/ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: B9CLY4 ABC transporter ATP-binding protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003801625.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR011527:IPR017940:IPR 017871:IPR003593; KEGG: lmc:Lm4b_00633 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: B9CLY5 ABC transporter, ATP-binding/permease protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003801626.1	InterPro IPR000835:IPR011991; KEGG: ele:Elen_1297 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: A4EB94  uncharacterized protein
YP_003801627.1	COGs: COG0426 flavoprotein; InterPro IPR008254:IPR016440; KEGG: shi:Shel_06350 uncharacterized flavoprotein; SPTR: C7N3V3 Uncharacterized flavoprotein; PFAM: Metallo-beta-lactamase superfamily
YP_003801628.1	InterPro IPR002678; KEGG: cpi:Cpin_6084 protein of unknown function DUF34; SPTR: B9Y4I2  uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3)
YP_003801629.1	COGs: COG2893 phosphotransferase system mannose/fructose-specific component IIA; InterPro IPR004701; KEGG: lga:LGAS_0517 phosphotransferase system, mannose/fructose-specific component IIA; PFAM: PTS system fructose subfamily IIA component; SPTR: Q045F7 phosphotransferase system, mannose/fructose-specific component IIA; PFAM: PTS system fructose IIA component
YP_003801630.1	COGs: COG3716 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IID; InterPro IPR004704; KEGG: lrl:LC705_00486 PTS system, mannose/fructose/N-acetylgalactosamine-specific IID component; PFAM: PTS system mannose/fructose/sorbose family IID component; SPTR: C2ECE1 PTS family mannose/fructose/sorbose porter component IID; PFAM: PTS system mannose/fructose/sorbose family IID component
YP_003801631.1	COGs: COG3715 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIC; InterPro IPR004700; KEGG: lcb:LCABL_04740 EF0078 (PTS system, IIC component); PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; SPTR: Q3Y309 phosphotransferase system PTS, sorbose-specific IIC subunit; PFAM: PTS system sorbose-specific iic component
YP_003801632.1	COGs: COG3444 phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIB; InterPro IPR004720; KEGG: lcb:LCABL_04730 phosphotransferase system sugar-specific EIIB component; PFAM: PTS system sorbose subfamily IIB component; SPTR: C6JMK3 PTS system sorbose subfamily IIB component; PFAM: PTS system sorbose subfamily IIB component
YP_003801633.1	COGs: COG3933 Transcriptional antiterminator; InterPro IPR004701:IPR011608:IPR002078; KEGG: tte:TTE0191 ATPase; SPTR: C0CTE0  uncharacterized protein; PFAM: PTS system fructose IIA component; Sigma-54 interaction domain; PRD domain
YP_003801634.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR011527:IPR014223:IPR 017940:IPR017871:IPR003593; KEGG: eel:EUBELI_20240 ATP-binding cassette, subfamily C, bacterial; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: A6NPE3  uncharacterized protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter; ABC transporter transmembrane region; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC
YP_003801635.1	COGs: COG4988 ABC-type transport system involved in cytochrome bd biosynthesis ATPase and permease components; InterProIPR001140:IPR003439:IPR011527:IPR017940:IPR 017871:IPR003593; KEGG: apv:Apar_0272 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: A6NPE2  uncharacterized protein; PFAM: ABC transporter; ABC transporter transmembrane region
YP_003801636.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR011527:IPR017940:IPR 017871:IPR003593; KEGG: ele:Elen_3091 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C8WPT9 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003801637.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003439:IPR011527:IPR017940:IPR017871:IPR 003593; KEGG: ele:Elen_3090 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8WPT8 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003801638.1	COGs: COG0605 Superoxide dismutase; InterPro IPR019831:IPR019832:IPR001189:IPR019833; KEGG: superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like; PRIAM: Superoxide dismutase; SPTR: C4C660 Superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain
YP_003801639.1	COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331:IPR009078:IPR012347:IPR002177; KEGG: fnu:FN1079 neutrophil-activating protein A; PFAM: Ferritin Dps family protein; SPTR: A8RN70  uncharacterized protein; PFAM: Ferritin-like domain
YP_003801640.1	COGs: COG1479 conserved hypothetical protein; InterPro IPR004919:IPR011089:IPR019736; KEGG: shi:Shel_03030 hypothetical protein; PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; SPTR: C7N265 Uncharacterized conserved protein; PFAM: Protein of unknown function DUF262; Protein of unknown function (DUF1524)
YP_003801641.1	COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: hor:Hore_20210 restriction modification system DNA specificity domain protein; PFAM: restriction modification system DNA specificity domain; SPTR: C3PVU0 Type I restriction enzyme EcoAI specificity protein; PFAM: Type I restriction modification DNA specificity domain
YP_003801642.1	InterPro IPR000055; KEGG: tte:TTE1545 restriction endonuclease S subunits; PFAM: restriction modification system DNA specificity domain; SPTR: C2M4T0 Type I restriction modification DNA specificity domain protein; PFAM: Type I restriction modification DNA specificity domain
YP_003801643.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104:IPR011010:IPR010998:IPR013762; KEGG: tde:TDE2742 phage integrase family site specific recombinase; PFAM: integrase family protein; SPTR: C7GDP9 Site-specific recombinase, phage integrase family; PFAM: Phage integrase family
YP_003801644.1	COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: bth:BT_4520  type I restriction enzyme EcoAI protein; PFAM: restriction modification system DNA specificity domain; SPTR: Q89Z57  type I restriction enzyme S.BthVORF4518AP; PFAM: Type I restriction modification DNA specificity domain
YP_003801645.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356:IPR002296:IPR002052; KEGG: mma:MM_1669 type I restriction-modification system specificity subunit; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: B0PEE0  uncharacterized protein; PFAM: N-6 DNA Methylase; HsdM N-terminal domain
YP_003801646.1	COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409:IPR006935:IPR014021:IPR014001; KEGG: dvl:Dvul_0853 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase; SPTR: A1VBQ8 Type III restriction enzyme, res subunit; PFAM: Domain of unknown function (DUF3559); Type III restriction enzyme, res subunit
YP_003801647.1	KEGG: shi:Shel_02990 hypothetical protein; SPTR: C7N261  uncharacterized protein
YP_003801648.1	KEGG: sen:SACE_0168 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; SPTR: A4F646 Possible 4-hydroxybenzoate polyprenyltransferase
YP_003801649.1	COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; InterProIPR006204:IPR013750:IPR020568:IPR014721:IPR 004424; KEGG: apv:Apar_0169 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; SPTR: B9CMQ2 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
YP_003801650.1	COGs: COG4466 Uncharacterized protein; InterPro IPR009366; KEGG: apv:Apar_0168 protein of unknown function DUF1021; PFAM: protein of unknown function DUF1021; SPTR: C8W916  uncharacterized protein; PFAM: Protein of unknown function (DUF1021)
YP_003801651.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587:IPR000994; KEGG: ele:Elen_2856 peptidase M24; PFAM: peptidase M24; creatinase; SPTR: C8WN79 Peptidase M24; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain
YP_003801652.1	COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148:IPR018322; KEGG: apv:Apar_0167 glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; SPTR: A4E8K7  uncharacterized protein; TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase
YP_003801653.1	COGs: COG0127 Xanthosine triphosphate pyrophosphatase; InterPro IPR002637; KEGG: apv:Apar_0166 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1 family protein; PRIAM: Nucleoside-triphosphatase; SPTR: B9CMP8 Nucleoside-triphosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
YP_003801654.1	COGs: COG0689 RNase PH; InterProIPR001247:IPR015847:IPR020568:IPR002381:IPR 018336; KEGG: apv:Apar_0165 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: C8W913 Ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
YP_003801655.1	COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR013221:IPR004101:IPR005761; KEGG: apv:Apar_1218 UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: B9CMP7 UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases
YP_003801656.1	COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670:IPR018211; KEGG: apv:Apar_0133 iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: B9CM18 NADPH-dependent butanol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase
YP_003801657.1	KEGG: apv:Apar_0132 response regulator receiver and SARP domain protein; SPTR: C8W8Y0 Response regulator receiver and SARP domain protein
YP_003801658.1	KEGG: apv:Apar_0131 hypothetical protein; SPTR: B9CM16  uncharacterized protein
YP_003801659.1	COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178:IPR016152; KEGG: lrh:LGG_02667 PTS system, IIA component; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: B9CME0 PTS system, IIA component; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_003801660.1	KEGG: pfl:PFL_0087 diguanylate cyclase, SPTR: Q4KKJ4 Diguanylate cyclase
YP_003801661.1	KEGG: Stoml2; stomatin (Epb7.2)-like 2; SPTR: A2AG40 MCG1040650
YP_003801662.1	KEGG: DNJ34; DnaJ-like protein; SPTR: A8IHL1 DnaJ-like protein
YP_003801663.1	InterPro IPR011647; KEGG: pna:Pnap_1214 hypothetical protein; PFAM: KWG Leptospira repeat protein; SPTR: A1VLK1 KWG Leptospira repeat protein
YP_003801664.1	KEGG: cdf:CD0044 hypothetical protein; SPTR: C2D6X2  uncharacterized protein
YP_003801665.1	COGs: COG3775 phosphotransferase system galactitol-specific IIC component; InterPro IPR004703:IPR013014; KEGG: apv:Apar_0152 PTS system galactitol-specific IIC component; PFAM: PTS system Galactitol-specific IIC component; SPTR: C2D6X1 PTS family galactitol (Gat) porter component IIC; PFAM: PTS system sugar-specific permease component
YP_003801666.1	InterPro IPR003501:IPR013011; KEGG: apv:Apar_0151 phosphotransferase system lactose/cellobiose-specific IIB subunit; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; SPTR: C2D6W9 PTS family galactitol (Gat) porter component IIB; PFAM: PTS system, Lactose/Cellobiose specific IIB subunit
YP_003801667.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: apv:Apar_0129 UbiC transcription regulator-associated domain protein; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: B9CMD3 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003801668.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: esi:Exig_0480 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C2D7U4 GntR family transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003801669.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: apv:Apar_0128 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: B9CMD1 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase family
YP_003801670.1	InterPro IPR007060; KEGG: ccu:Ccur_03910 septum formation initiator; PFAM: Septum formation initiator; SPTR: C2D9R1  uncharacterized protein; PFAM: Septum formation initiator
YP_003801671.1	COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR004518:IPR011551; KEGG: apv:Apar_0126 MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: B9CMC9 Tetrapyrrole methylase family protein, MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein
YP_003801672.1	COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR003711:IPR011545:IPR001650:IPR005118:IPR 004576:IPR014021:IPR014001; KEGG: apv:Apar_0124 transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: C8W8X2 Transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd)
YP_003801673.1	COGs: COG1640 4-alpha-glucanotransferase; InterProIPR006047:IPR003385:IPR017853:IPR013781:IPR 006589; KEGG: apv:Apar_1046 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: B9CMC5 Amylopullulanase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: 4-alpha-glucanotransferase; Alpha amylase, catalytic domain; TIGRFAM: 4-alpha-glucanotransferase
YP_003801674.1	COGs: COG0297 Glycogen synthase; InterPro IPR013534:IPR001296:IPR011835; KEGG: apv:Apar_1047 glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; PRIAM: Starch synthase; SPTR: C2D9Q6 Starch synthase; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type
YP_003801675.1	COGs: COG0448 ADP-glucose pyrophosphorylase; InterPro IPR011832; KEGG: apv:Apar_1048 glucose-1-phosphate adenylyltransferase, GlgD subunit; PRIAM: Glucose-1-phosphate adenylyltransferase; SPTR: C2D9Q5 Possible glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit
YP_003801676.1	COGs: COG0448 ADP-glucose pyrophosphorylase; InterPro IPR005835:IPR011004:IPR011831:IPR005836; KEGG: apv:Apar_1049 glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; SPTR: C2D9Q4 Glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase
YP_003801677.1	COGs: COG0058 Glucan phosphorylase; InterPro IPR000811:IPR011833; KEGG: apv:Apar_1050 glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; PRIAM: phosphorylase; SPTR: C2D9Q3 phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: Carbohydrate phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases
YP_003801678.1	COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR004193:IPR006047:IPR006048:IPR017853:IPR 014756:IPR013783:IPR013781:IPR013780:IPR006407:IPR006589; KEGG: apv:Apar_1051 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: B9CMC0 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase
YP_003801679.1	COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265:IPR003651:IPR011257:IPR005759; KEGG: apv:Apar_0123 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: B9CMB9 Endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III
YP_003801680.1	COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterProIPR000277:IPR015424:IPR015421:IPR015422:IPR 006235; KEGG: cag:Cagg_0970 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; PRIAM: O-acetylhomoserine aminocarboxypropyltransferase; SPTR: B8G6F1 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase
YP_003801681.1	COGs: COG1592 Rubrerythrin; InterProIPR003251:IPR009078:IPR012347:IPR004039:IPR 009040; KEGG: apv:Apar_0122 rubrerythrin; PFAM: Rubrerythrin; SPTR: A4E9W1  uncharacterized protein; PFAM: Rubrerythrin
YP_003801682.1	COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR003265:IPR011257; KEGG: apv:Apar_0121 HhH-GPD family protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; SPTR: B9CMB7 HhH-GPD family protein; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif
YP_003801683.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: apv:Apar_0120 transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; SPTR: C8W8W8 Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator)
YP_003801684.1	COGs: COG0560 phosphoserine phosphatase; InterPro IPR006385; KEGG: apv:Apar_0119 HAD-superfamily subfamily IB hydrolase, TIGR01490; SPTR: C8W8W7 HAD-superfamily subfamily IB hydrolase, TIGR01490; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
YP_003801685.1	KEGG: apv:Apar_0118 hypothetical protein; SPTR: C2D9P2  uncharacterized protein
YP_003801686.1	COGs: COG0353 Recombinational DNA repair protein (RecF pathway); InterPro IPR015967:IPR006171:IPR000093:IPR006154; KEGG: apv:Apar_0117 recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; SPTR: B9CMB3 Recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR
YP_003801687.1	COGs: COG0718 conserved hypothetical protein; InterPro IPR004401; KEGG: apv:Apar_0116 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C2D9P0  uncharacterized protein; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: conserved hypothetical protein TIGR00103
YP_003801688.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; InterProIPR003959:IPR008921:IPR012763:IPR001270:IPR 003593; KEGG: apv:Apar_0115 DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; PRIAM: DNA-directed DNA polymerase; SMART: AAA ATPase; SPTR: C8W8W3 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, delta' subunit; DNA polymerase III, subunits gamma and tau
YP_003801689.1	COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: lpj:JDM1_1817 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SPTR: Q88VA2 phosphoglycerate mutase; PFAM: phosphoglycerate mutase family
YP_003801690.1	KEGG: bad:BAD_1597 PTS system cellobiose-specific IIC component; SPTR: B6XW30  uncharacterized protein; PFAM: GtrA-like protein
YP_003801691.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR002772:IPR017853; KEGG: jde:Jden_2534 glycoside hydrolase family 3 domain protein; PFAM: glycoside hydrolase family 3 domain protein; SPTR: A8S9B6  uncharacterized protein; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain
YP_003801692.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR002772:IPR001764:IPR017853; KEGG: jde:Jden_0472 beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; PRIAM: Beta-glucosidase; SPTR: C7R077 Beta-glucosidase; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain
YP_003801693.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterProIPR019546:IPR001764:IPR002772:IPR017853:IPR 006311:IPR017909; KEGG: pjd:Pjdr2_0846 glycoside hydrolase family 3 domain protein; PFAM: glycoside hydrolase family 3 domain protein; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: C6CV11 Glycoside hydrolase family 3 domain protein; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain
YP_003801694.1	KEGG: bcv:Bcav_2626 extracellular solute-binding protein family 1; SPTR: A8SE43  uncharacterized protein
YP_003801695.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492:IPR011006; KEGG: jde:Jden_0468 two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; SPTR: A6P1A1  uncharacterized protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003801696.1	KEGG: jde:Jden_0469 ATP-binding region ATPase domain protein; SPTR: A6NZE8  uncharacterized protein
YP_003801697.1	KEGG: vap:Vapar_3087 tRNA(Ile)-lysidine synthetase; SPTR: C4FAS4  uncharacterized protein
YP_003801698.1	COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: apv:Apar_1312 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: A4EB99  uncharacterized protein; PFAM: SNARE associated Golgi protein
YP_003801699.1	COGs: COG1001 Adenine deaminase; InterPro IPR006680:IPR011059; KEGG: ele:Elen_1972 adenine deaminase; PFAM: amidohydrolase; PRIAM: Adenine deaminase; SPTR: B9CNK2 Adenine deaminase; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase
YP_003801700.1	InterPro IPR003368:IPR008970:IPR011050:IPR006626; KEGG: cjk:jk0461  surface-anchored collagen-binding protein; PFAM: Polymorphic membrane protein Chlamydia; SPTR: C2KVK9 Possible surface-anchored collagen-binding protein; TIGRFAM: polymorphic outer membrane protein; TIGRFAM: LPXTG-motif cell wall anchor domain; Chlamydial polymorphic outer membrane protein repeat
YP_003801701.1	COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001672:IPR018189; KEGG: bad:BAD_0231 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); PRIAM: Glucose-6-phosphate isomerase; SPTR: C2D9N7 Glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase
YP_003801702.1	KEGG: apv:Apar_1319 hypothetical protein; SPTR: B6GA67  uncharacterized protein
YP_003801703.1	COGs: COG3118 Thioredoxin domain-containing protein; InterProIPR013766:IPR012336:IPR012335:IPR005746:IPR 017936:IPR006662:IPR017937; KEGG: apv:Apar_1320 thioredoxin; PFAM: Thioredoxin domain; SPTR: B9CLH1 Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_003801704.1	InterPro IPR000326:IPR016118; KEGG: apv:Apar_1321 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: C2D9N4 Possible phosphatase; PFAM: PAP2 superfamily
YP_003801705.1	COGs: COG0622 phosphoesterase; InterPro IPR004843:IPR000979; KEGG: apv:Apar_1322 phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; SPTR: C2D9N3 Possible phosphoesterase; TIGRFAM: phosphodiesterase, MJ0936 family; TIGRFAM: phosphoesterase, MJ0936 family
YP_003801706.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492:IPR011006; KEGG: apv:Apar_1323 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: C2D9N2 Two-component response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_003801707.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR010559:IPR003594:IPR005467:IPR004358; KEGG: apv:Apar_1324 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; PRIAM: Histidine kinase; SMART: ATP-binding region ATPase domain protein; SPTR: C2D9N1 Histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003801708.1	KEGG: ccu:Ccur_01130 hypothetical protein; SPTR: C4FAL0  uncharacterized protein
YP_003801709.1	COGs: COG4708 membrane protein; InterPro IPR010387; KEGG: apv:Apar_1325 protein of unknown function DUF988; PFAM: protein of unknown function DUF988; SPTR: C4FAL1  uncharacterized protein; PFAM: QueT transporter
YP_003801710.1	COGs: COG1284 conserved hypothetical protein; InterPro IPR003740:IPR019264; KEGG: cpy:Cphy_1070 hypothetical protein; PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; SPTR: C2D9M9 Transporter; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179)
YP_003801711.1	COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466:IPR017754; KEGG: ele:Elen_0678 agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; PRIAM: Agmatine deiminase; SPTR: A4E914  uncharacterized protein; TIGRFAM: agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; TIGRFAM: agmatine deiminase
YP_003801712.1	COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006132:IPR006131:IPR006130:IPR002292; KEGG: ele:Elen_0676 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; SPTR: C8WMM7 Ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase
YP_003801713.1	KEGG: apv:Apar_1329 hypothetical protein; SPTR: C8W8G2  uncharacterized protein
YP_003801714.1	COGs: COG0531 Amino acid transporter; InterPro IPR004841:IPR002293; KEGG: ele:Elen_0677 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: C8WMM8 Amino acid permease-associated region; PFAM: Amino acid permease
YP_003801715.1	COGs: COG2909 ATP-dependent transcriptional regulator protein; InterPro IPR000792:IPR016032:IPR011991; KEGG: ele:Elen_0675 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: C8WMM6 Transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family
YP_003801716.1	COGs: COG0549 Carbamate kinase; InterPro IPR001048:IPR003964:IPR000623; KEGG: shi:Shel_05980 carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Carbamate kinase; SPTR: B9CLH9 Carbamate kinase; PFAM: Amino acid kinase family; TIGRFAM: carbamate kinase
YP_003801717.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR020058:IPR014729:IPR020060:IPR001412; KEGG: apv:Apar_1332 glutamate--tRNA ligase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: C4FBW0  uncharacterized protein; PFAM: tRNA synthetases class I (E and Q), catalytic domain
YP_003801718.1	KEGG: pag:PLES_44551  oxidoreductase; SPTR: B7UY73 Probable oxidoreductase
YP_003801719.1	COGs: COG0172 Seryl-tRNA synthetase; InterProIPR015866:IPR002314:IPR010978:IPR002317:IPR 006195:IPR018156; KEGG: apv:Apar_1338 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; PRIAM: Serine--tRNA ligase; SPTR: C8W8H1 Seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase
YP_003801720.1	KEGG: apv:Apar_1339 hypothetical protein; SPTR: C8W8H2  uncharacterized protein
YP_003801721.1	COGs: COG0515 Serine/threonine protein kinase; InterProIPR017442:IPR011009:IPR000719:IPR008271:IPR 020635:IPR002290; KEGG: apv:Apar_1340 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: B9CLN8 Serine/threonine protein kinase; PFAM: Protein kinase domain
YP_003801722.1	COGs: COG1716 FOG: FHA domain; InterPro IPR000253:IPR008984; KEGG: apv:Apar_1341 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: C2D9G8  uncharacterized protein; PFAM: Protein of unknown function (DUF2662); FHA domain
YP_003801723.1	COGs: COG1716 FOG: FHA domain; InterPro IPR000253:IPR008984; KEGG: apv:Apar_1342 FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: C8W8H5 FHA domain containing protein; PFAM: FHA domain
YP_003801724.1	COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR014045:IPR001932:IPR010916; KEGG: apv:Apar_1343 protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C-like; PRIAM: phosphoprotein phosphatase; SMART: protein phosphatase 2C domain protein; SPTR: C2D9H0 Protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C
YP_003801725.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR001182:IPR005311:IPR001460:IPR012338; KEGG: apv:Apar_1344 peptidoglycan glycosyltransferase; PFAM: cell cycle protein; Penicillin-binding protein dimerisation domain; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: C2D9H1  uncharacterized protein; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; Cell cycle protein
YP_003801726.1	COGs: COG0515 Serine/threonine protein kinase; InterProIPR017442:IPR005543:IPR011009:IPR000719:IPR 017441:IPR008271:IPR020635:IPR002290; KEGG: apv:Apar_1345 serine/threonine protein kinase with PASTA sensor(s); PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; PASTA domain containing protein; SPTR: C2D9H2 Possible non-specific serine/threonine protein kinase; PFAM: Protein kinase domain; PASTA domain
YP_003801727.1	KEGG: apv:Apar_1346 hypothetical protein; SPTR: C2D9H9  uncharacterized protein
YP_003801728.1	COGs: COG0152 phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR001636:IPR013816:IPR018236; KEGG: apv:Apar_1347 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: A4ECU2  uncharacterized protein; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_003801729.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR009082:IPR 005467:IPR004358; KEGG: apv:Apar_1348 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C2D9I0 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003801730.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006:IPR011991; KEGG: apv:Apar_1349 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C2D9I1 Response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003801731.1	InterPro IPR019546:IPR006311:IPR017909; KEGG: apv:Apar_1350 hypothetical protein; PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: C2D9I2  uncharacterized protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003801732.1	COGs: COG0015 Adenylosuccinate lyase; InterProIPR000362:IPR019468:IPR008948:IPR004769:IPR 003031:IPR020557; KEGG: apv:Apar_1351 adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; SPTR: B6GDD6  uncharacterized protein; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase
YP_003801733.1	KEGG: ere:EUBREC_3195 hypothetical protein; SPTR: B6G8Z8  uncharacterized protein
YP_003801734.1	COGs: COG0165 Argininosuccinate lyase; InterProIPR000362:IPR008948:IPR009049:IPR003031:IPR 020557; KEGG: shi:Shel_26580 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: C7N3D4 Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase
YP_003801735.1	COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518:IPR014729:IPR018223; KEGG: shi:Shel_26590 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: C7N3D5 Argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase
YP_003801736.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR009082:IPR 005467:IPR004358; KEGG: apv:Apar_0091 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: B9CM46 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003801737.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006; KEGG: apv:Apar_0090 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: B9CM45 DNA-binding response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003801738.1	InterProIPR013740:IPR012336:IPR012335:IPR017936:IPR 017937; KEGG: apv:Apar_0089 redoxin domain protein; PFAM: Redoxin domain protein; SPTR: B9CM44 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family
YP_003801739.1	COGs: COG0348 Polyferredoxin; InterPro IPR001450:IPR017896:IPR017900; KEGG: apv:Apar_0088 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B9CM43 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003801740.1	KEGG: apv:Apar_0087 hypothetical protein; SPTR: C8W8T5  uncharacterized protein
YP_003801741.1	COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: apv:Apar_0008 protein of unknown function DUF151; PFAM: protein of unknown function DUF151; SPTR: B9CLS8  uncharacterized protein; PFAM: Uncharacterised ACR, COG1259
YP_003801742.1	COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterProIPR002205:IPR006691:IPR013760:IPR013758:IPR 013757:IPR005743; KEGG: apv:Apar_0007 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: C4FB31  uncharacterized protein; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase C-terminal domain, beta-propeller; DNA gyrase/topoisomerase IV, subunit A; TIGRFAM: DNA gyrase, A subunit
YP_003801743.1	COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR013506:IPR006171:IPR002288:IPR 013760:IPR020568:IPR014721:IPR013759:IPR011557:IPR001241:I PR000565:IPR018522; KEGG: apv:Apar_0006 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: C4FB30 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit
YP_003801744.1	KEGG: apv:Apar_0005 hypothetical protein; SPTR: C2D9K5  uncharacterized protein
YP_003801745.1	COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); InterPro IPR003395:IPR001238; KEGG: apv:Apar_0004 DNA replication and repair protein RecF; PFAM: SMC domain protein; SPTR: C8W8K6 DNA replication and repair protein RecF; TIGRFAM: DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein
YP_003801746.1	COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: apv:Apar_0003 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III beta chain; SPTR: C8W8K5 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit
YP_003801747.1	COGs: COG0593 ATPase involved in DNA replication initiation; InterProIPR013317:IPR013159:IPR010921:IPR020591:IPR 018312:IPR003593; KEGG: apv:Apar_0002 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; SPTR: C2D9K2 Chromosomal replication initiator protein dnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA
YP_003801748.1	InterPro IPR003594:IPR000835:IPR011991; KEGG: apv:Apar_0001 ATP-binding region ATPase domain protein; PFAM: ATP-binding region ATPase domain protein; regulatory protein MarR; SPTR: C2D9K1  uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003801749.1	InterPro IPR000271; KEGG: shi:Shel_28540 LSU ribosomal protein L34P; PFAM: ribosomal protein L34; SPTR: A4ECS2 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type
YP_003801750.1	InterPro IPR000100:IPR020568:IPR014721; KEGG: apv:Apar_1368 ribonuclease P protein component; PFAM: ribonuclease P protein; SPTR: C8W8K1 Ribonuclease P protein component; TIGRFAM: ribonuclease P protein component; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial
YP_003801751.1	COGs: COG0759 conserved hypothetical protein; InterPro IPR002696; KEGG: cyn:Cyan7425_1005 protein of unknown function DUF37; PFAM: protein of unknown function DUF37; SPTR: B8HXV2  uncharacterized protein; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein TIGR00278
YP_003801752.1	COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708:IPR020001; KEGG: apv:Apar_1366 60 kDa inner membrane insertion protein; PFAM: 60 kDa inner membrane insertion protein; SPTR: C2D9J7 Inner membrane insertion protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain
YP_003801753.1	COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: apv:Apar_1365 single-stranded nucleic acid binding R3H domain protein; PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; SPTR: B9CLR6 Spoiiij-associated rna-binding protein; PFAM: R3H domain
YP_003801754.1	COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR003682; KEGG: apv:Apar_1364 methyltransferase GidB; PFAM: glucose inhibited division protein; SPTR: C8W8J7 Methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB