-- dump date 20140619_223922 -- class Genbank::CDS -- table cds_note -- id note YP_004251300.1 COGs: COG0593 ATPase involved in DNA replication initiation; HAMAP: Chromosomal replication control, initiator DnaA; InterPro IPR001957: IPR003593: IPR013159: IPR013317; KEGG: fps:FP1208 chromosomal replication initiation protein; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: Chromosomal replication control, initiator DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_004251301.1 COGs: COG1739 conserved hypothetical protein; InterPro IPR001498; KEGG: bth:BT_1150 hypothetical protein; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; SPTR: uncharacterized protein; PFAM: Uncharacterized protein family UPF0029; TIGRFAM: uncharacterized protein, YigZ family YP_004251302.1 KEGG: bfs:BF1219 transposase; SPTR: Transposase YP_004251303.1 KEGG: bth:BT_4010 hypothetical protein; SPTR: uncharacterized protein YP_004251304.1 COGs: COG0338 Site-specific DNA methylase; InterPro IPR012327; KEGG: bth:BT_4011 DNA-methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: DNA-methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_004251305.1 InterPro IPR003593; KEGG: slt:Slit_0851 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: AAA ATPase YP_004251306.1 KEGG: bth:BT_2347 transposase; SPTR: Transposase YP_004251307.1 InterPro IPR008878; KEGG: bvu:BVU_3680 hypothetical protein; PFAM: Transposase (), IS66 Orf2 like; SPTR: uncharacterized protein; PFAM: IS66 Orf2 like protein YP_004251308.1 COGs: COG3436 Transposase and inactivated derivatives; KEGG: bth:BT_4278 transposase; SPTR: Transposase; PFAM: Transposase IS66 family YP_004251309.1 KEGG: tle:Tlet_1900 flagellar export/assembly protein; SPTR: uncharacterized protein YP_004251310.1 KEGG: dre:503757 zgc:110789; SPTR: uncharacterized protein YP_004251311.1 KEGG: bfr:BF1390 tyrosine type site-specific recombinase; SPTR: uncharacterized protein YP_004251312.1 InterPro IPR001647; KEGG: bfr:BF1391 transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_004251313.1 COGs: COG2311 membrane protein; InterPro IPR007349; KEGG: bth:BT_1547 hypothetical protein; PFAM: Protein of unknown function DUF418; SPTR: membrane-associated protein; PFAM: Protein of unknown function (DUF418) YP_004251315.1 COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: bfs:BF3298 acetyltransferase; PRIAM: Maltose O-acetyltransferase; SPTR: Galactoside O-acetyltransferase; PFAM: Maltose acetyltransferase; Bacterial transferase hexapeptide (three repeats) YP_004251316.1 COGs: COG2606 conserved hypothetical protein; InterPro IPR007214; KEGG: str:Sterm_0120 YbaK/prolyl-tRNA synthetase associated region; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; SPTR: YbaK/EbsC protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain YP_004251317.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: bvu:BVU_2218 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004251318.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2219 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004251319.1 InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug domain protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004251320.1 KEGG: cpi:Cpin_5146 hypothetical protein; SPTR: lipoprotein YP_004251321.1 KEGG: cpi:Cpin_5145 hypothetical protein; SPTR: lipoprotein YP_004251322.1 KEGG: cpi:Cpin_5144 hypothetical protein; SPTR: lipoprotein YP_004251323.1 InterPro IPR013766; KEGG: bth:BT_3069 disulphide-isomerase; PFAM: Thioredoxin domain; SPTR: uncharacterized protein; PFAM: Thioredoxin YP_004251324.1 InterPro IPR000111; KEGG: bth:BT_2662 alpha-galactosidase precursor; PFAM: Glycoside hydrolase, clan GH-D; PRIAM: Alpha-galactosidase; SPTR: uncharacterized protein; PFAM: Melibiase; Carbohydrate binding module (family 6) YP_004251325.1 InterPro IPR007541; KEGG: pdi:BDI_3386 secretory protein; PFAM: Uncharacterised protein family, basic secretory protein; SPTR: secretory protein; PFAM: Plant Basic Secretory Protein YP_004251326.1 COGs: COG0153 Galactokinase; InterPro IPR000705: IPR019539: IPR006204: IPR013750; KEGG: pdi:BDI_1666 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; PRIAM: Galactokinase; SPTR: Galactokinase; TIGRFAM: Galactokinase; PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase YP_004251327.1 COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: bth:BT_0356 aldose 1-epimerase precursor; PFAM: Aldose 1-epimerase; PRIAM: Aldose 1-epimerase; SPTR: uncharacterized protein; PFAM: Aldose 1-epimerase; TIGRFAM: galactose mutarotase YP_004251328.1 COGs: COG4146 symporter; InterPro IPR019900: IPR001734; KEGG: bth:BT_0355 Na+/glucose cotransporter; PFAM: Sodium/solute symporter; SPTR: uncharacterized protein; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family YP_004251329.1 COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: bth:BT_0353 L-ribulose-5-phosphate 4-epimerase; PFAM: Class II aldolase/adducin, N-terminal; PRIAM: L-ribulose-5-phosphate 4-epimerase; SPTR: L-ribulose 5-phosphate 4-epimerase; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase YP_004251330.1 COGs: COG2160 L-arabinose isomerase; HAMAP: L-arabinose isomerase; InterPro IPR003762; KEGG: bvu:BVU_2320 L-arabinose isomerase; PFAM: L-arabinose isomerase; PRIAM: L-arabinose isomerase; SPTR: uncharacterized protein; PFAM: L-arabinose isomerase; L-arabinose isomerase C-terminal domain YP_004251331.1 COGs: COG1069 Ribulose kinase; HAMAP: L-ribulokinase; InterPro IPR005929: IPR018484: IPR018485; KEGG: tcr:508625.150 L-ribulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; PRIAM: Ribulokinase; SPTR: Ribulokinase; TIGRFAM: L-ribulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: L-ribulokinase YP_004251332.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: bth:BT_2485 major outer membrane protein OmpA; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Major outer membrane protein OmpA; PFAM: OmpA family YP_004251333.1 KEGG: bth:BT_1502 hypothetical protein; SPTR: uncharacterized protein YP_004251335.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004251336.1 KEGG: pdi:BDI_3915 hypothetical protein; SPTR: uncharacterized protein YP_004251337.1 COGs: COG4277 DNA-binding protein with the Helix-hairpin-helix motif; InterPro IPR007197; KEGG: pdi:BDI_3916 hypothetical protein; PFAM: Radical SAM; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily YP_004251338.1 COGs: COG1443 Isopentenyldiphosphate isomerase; InterPro IPR000086; KEGG: bvu:BVU_0339 NTP pyrophosphohydrolase; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein; PFAM: NUDIX domain YP_004251339.1 KEGG: bth:BT_2176 hypothetical protein; SPTR: uncharacterized protein; PFAM: Membrane protein of unknown function (DUF340) YP_004251340.1 COGs: COG2431 membrane protein; InterPro IPR005642; KEGG: bfr:BF3876 hypothetical protein; PFAM: Protein of unknown function DUF340, prokaryotic membrane; SPTR: membrane protein; PFAM: Membrane protein of unknown function (DUF340) YP_004251341.1 COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR006424: IPR020828: IPR020829; KEGG: sat:SYN_01810 glyceraldehyde 3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: uncharacterized protein; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_004251342.1 KEGG: edi:EDI_113180 hypothetical protein; SPTR: uncharacterized protein YP_004251343.1 COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR006424: IPR020828: IPR020829; KEGG: sat:SYN_01810 glyceraldehyde 3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_004251344.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: tRNA(Ile)-lysidine synthase; InterPro IPR012795: IPR012796: IPR011063; KEGG: pdi:BDI_1399 cell-cycle protein; PFAM: PP-loop; SPTR: tRNA(Ile)-lysidine synthase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; PFAM: PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain YP_004251345.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593: IPR003439; KEGG: bfr:BF1582 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: ABC transporter YP_004251346.1 COGs: COG4912 DNA alkylation repair protein; InterPro IPR014825; KEGG: pdi:BDI_2958 hypothetical protein; PFAM: DNA alkylation repair enzyme; SPTR: uncharacterized protein; PFAM: DNA alkylation repair enzyme YP_004251347.1 InterPro IPR011933; KEGG: phe:Phep_3186 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Double transmembrane domain; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain YP_004251348.1 COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: bvu:BVU_1915 ParA family ATPase; SPTR: Sporulation initiation inhibitor protein Soj; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004251349.1 COGs: COG1475 transcriptional regulator protein; InterPro IPR004437: IPR003115; KEGG: bfs:BF0695 ParB-like chromosome partitioning protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: chromosome partitioning protein ParB; TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins YP_004251350.1 KEGG: bth:BT_4000 hypothetical protein; SPTR: uncharacterized protein YP_004251351.1 InterPro IPR002482: IPR008258: IPR018392; KEGG: pdi:BDI_2556 glycoside hydrolase; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Glycoside hydrolase 23; PFAM: Transglycosylase SLT domain; LysM domain YP_004251353.1 KEGG: cph:Cpha266_1499 hypothetical protein; SPTR: Conserved domain protein YP_004251354.1 KEGG: pgi:PG0350 internalin-related protein; SPTR: Leucine Rich Repeat domain protein YP_004251355.1 KEGG: pdi:BDI_2671 hypothetical protein; SPTR: adhesion lipoprotein YP_004251356.1 KEGG: pcb:PC000477.02.0 hypothetical protein; SPTR: uncharacterized protein YP_004251357.1 KEGG: bvu:BVU_0437 hypothetical protein; SPTR: uncharacterized protein YP_004251358.1 COGs: COG2003 DNA repair protein; InterPro IPR001405; KEGG: fjo:Fjoh_3582 DNA repair protein RadC; PFAM: Uncharacterised protein family, RadC-like; SPTR: DNA repair protein RadC; PFAM: Protein of unknown function (DUF2466) YP_004251360.1 KEGG: nfi:NFIA_068910 MRS7 family protein; SPTR: MRS7 family protein YP_004251362.1 InterPro IPR007711; KEGG: pru:PRU_1322 addiction module killer protein; PFAM: Plasmid maintenance system killer; SPTR: uncharacterized protein; PFAM: Plasmid maintenance system killer protein YP_004251363.1 COGs: COG3093 Plasmid maintenance system antidote protein; InterPro IPR013430: IPR001387; KEGG: pru:PRU_1323 addiction module antidote protein, HigA family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Addiction module antidote protein, HigA family; TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix; TIGRFAM: addiction module antidote protein, HigA family YP_004251364.1 KEGG: mla:Mlab_0859 hypothetical protein; SPTR: uncharacterized protein YP_004251365.1 KEGG: pti:PHATRDRAFT_49748 hypothetical protein YP_004251367.1 KEGG: ddi:DDB_G0274493 DNA ligase I; SPTR: uncharacterized protein YP_004251368.1 KEGG: bth:BT_2982 hypothetical protein; SPTR: uncharacterized protein YP_004251369.1 KEGG: see:SNSL254_B0002 hypothetical protein; SPTR: uncharacterized protein YP_004251370.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: dfe:Dfer_5219 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Site-specific recombinase XerD; tmRNA as predicted by Rfam (RF00023), score 165.42; PFAM: Phage integrase YP_004251371.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: bvu:BVU_0340 oxidoreductase; PFAM: Oxidoreductase, N-terminal; PRIAM: Alpha-N-acetylgalactosaminidase; SPTR: Oxidoreductase; PFAM: Oxidoreductase, NAD-binding Rossmann fold YP_004251372.1 InterPro IPR002575; KEGG: bfs:BF0850 desulfatase; PFAM: Aminoglycoside phosphotransferase; SPTR: uncharacterized protein; PFAM: Phosphotransferase enzyme family YP_004251373.1 InterPro IPR003059; KEGG: tva:TVAG_311760 hypothetical protein; PFAM: Colicin lysis protein; SPTR: uncharacterized protein YP_004251374.1 KEGG: bvu:BVU_0841 hypothetical protein; SPTR: uncharacterized protein YP_004251375.1 KEGG: fgr:FG02062.1 hypothetical protein; SPTR: uncharacterized protein YP_004251376.1 KEGG: bfr:BF0051 hypothetical protein; SPTR: uncharacterized protein YP_004251377.1 KEGG: bfr:BF3160 hypothetical protein; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004251378.1 KEGG: cgr:CAGL0L02827g hypothetical protein; SPTR: uncharacterized protein YP_004251379.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR013249; KEGG: pdi:BDI_2325 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: uncharacterized protein; PFAM: Sigma-70, region 4 YP_004251380.1 KEGG: bvu:BVU_0723 hypothetical protein; SPTR: uncharacterized protein YP_004251381.1 KEGG: bvu:BVU_0722 ATPase; SPTR: uncharacterized protein YP_004251382.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: cpi:Cpin_2882 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein YP_004251383.1 InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_3288 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_004251384.1 KEGG: cpi:Cpin_3289 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004251385.1 KEGG: cpi:Cpin_3290 hypothetical protein; SPTR: uncharacterized protein YP_004251386.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004251387.1 COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; InterPro IPR013740; KEGG: bvu:BVU_2222 thiol-disulfide oxidoreductase; PFAM: Redoxin; SPTR: thiol-disulfide oxidoreductase; PFAM: Redoxin YP_004251388.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593: IPR003439; KEGG: pdi:BDI_1269 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; TIGRFAM: ATP-binding cassette protein, ChvD family; manually curated; PFAM: ABC transporter; TIGRFAM: ATP-binding cassette protein, ChvD family YP_004251389.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR014327: IPR007627: IPR013249; KEGG: dfe:Dfer_2829 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004251390.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004251391.1 InterPro IPR012910: IPR000531; KEGG: bth:BT_3279 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: SusC homolog; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004251392.1 InterPro IPR012944; KEGG: phe:Phep_3995 hypothetical protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004251393.1 KEGG: ang:An16g08090 hypothetical protein; SPTR: lipoprotein YP_004251394.1 InterPro IPR000866; KEGG: bvu:BVU_3557 thiol:disulfide interchange protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004251395.1 InterPro IPR000866; KEGG: bth:BT_1292 thiol:disulfide interchange protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004251396.1 KEGG: pru:PRU_0277 hypothetical protein; SPTR: uncharacterized protein YP_004251397.1 KEGG: pdi:BDI_0354 hypothetical protein; SPTR: uncharacterized protein YP_004251398.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623: IPR002939; KEGG: bfs:BF3207 chaperone; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone DnaJ; PFAM: DnaJ C terminal region; DnaJ domain YP_004251399.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR014327: IPR007627: IPR013249; KEGG: pdi:BDI_0595 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004251400.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_2250 FecR protein; PFAM: FecR protein; SPTR: FecR protein; PFAM: FecR protein YP_004251401.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004251402.1 KEGG: pbe:PB000756.02.0 hypothetical protein; SPTR: uncharacterized protein YP_004251403.1 InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_6566 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004251404.1 InterPro IPR012944; KEGG: cpi:Cpin_6565 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; PFAM: SusD family YP_004251405.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: bfs:BF3245 hypothetical protein; SPTR: uncharacterized protein YP_004251406.1 COGs: COG1971 membrane protein; HAMAP: UPF0059 membrane protein yebN; InterPro IPR003810; KEGG: pdi:BDI_0173 hypothetical protein; PFAM: Protein of unknown function DUF204; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF YP_004251407.1 InterPro IPR014982; KEGG: pdi:BDI_3385 hypothetical protein; PFAM: GSCFA; SPTR: uncharacterized protein; PFAM: GSCFA family YP_004251408.1 InterPro IPR007730; KEGG: phe:Phep_0272 sporulation domain protein; PFAM: Sporulation related domain; SPTR: uncharacterized protein YP_004251409.1 COGs: COG3681 conserved hypothetical protein; HAMAP: Uncharacterised protein family UPF0597; InterPro IPR021144; KEGG: ckr:CKR_0543 hypothetical protein; SPTR: UPF0597 protein CKR_0543; PFAM: Serine dehydratase alpha chain YP_004251411.1 COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR020025: IPR003869; KEGG: shm:Shewmr7_1385 polysaccharide biosynthesis protein CapD; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR: uncharacterized protein; TIGRFAM: Pseudaminic acid biosynthesis, PseB; PFAM: Polysaccharide biosynthesis protein; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase YP_004251412.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR020026: IPR000653; KEGG: gfo:GFO_2027 SpsC-like DegT/DnrJ/EryC1/StrS family aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: uncharacterized protein; TIGRFAM: Pseudaminic acid biosynthesis, PseC; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase YP_004251413.1 COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR020039: IPR003329; KEGG: sli:Slin_4264 pseudaminic acid CMP-transferase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: N-acylneuraminate cytidylyltransferase; SPTR: Pseudaminic acid CMP-transferase; TIGRFAM: Pseudaminic acid biosynthesis, PseF; PFAM: Cytidylyltransferase; TIGRFAM: pseudaminic acid CMP-transferase YP_004251414.1 COGs: COG3980 Spore coat polysaccharide biosynthesis protein predicted glycosyltransferase; KEGG: gfo:GFO_2022 hypothetical protein; SPTR: Pseudaminic acid biosynthesis-associated protein PseG; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG YP_004251415.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: bbe:BBR47_42450 hypothetical protein; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: Diaminopimelate decarboxylase; SPTR: uncharacterized protein; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain YP_004251416.1 COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterPro IPR003806; KEGG: tra:Trad_0103 protein of unknown function DUF201; PFAM: ATP-grasp fold, DUF201-type; SPTR: ATP-grasp domain protein; PFAM: ATP-grasp domain YP_004251417.1 COGs: COG2089 Sialic acid synthase; InterPro IPR020030: IPR013132: IPR013974; KEGG: cat:CA2559_13043 sialic acid synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain; PRIAM: N-acetylneuraminate synthase; SPTR: Pseudaminic acid synthase; TIGRFAM: Pseudaminic acid biosynthesis, PseI; PFAM: NeuB family; TIGRFAM: pseudaminic acid synthase YP_004251418.1 InterPro IPR002797; KEGG: pdi:BDI_1414 O-antigen transporter; PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein; PFAM: Polysaccharide biosynthesis protein YP_004251419.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bth:BT_1712 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycoside transferase 4; PFAM: Glycosyl transferases group 1 YP_004251420.1 KEGG: btk:BT9727_5136 hypothetical protein; SPTR: uncharacterized protein; PFAM: Acyltransferase YP_004251421.1 KEGG: bwe:BcerKBAB4_5061 hypothetical protein; SPTR: Wzy YP_004251422.1 KEGG: ele:Elen_2416 hypothetical protein; SPTR: uncharacterized protein YP_004251423.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: nam:NAMH_1654 teichuronic acid biosynthesis; PFAM: Glycosyl transferase, family 2; SPTR: teichuronic acid biosynthesis glycosyltransferase TuaG; PFAM: Glycosyl transferase 2 YP_004251424.1 COGs: COG1232 Protoporphyrinogen oxidase; KEGG: hoh:Hoch_4100 protoporphyrinogen oxidase-like protein; SPTR: uncharacterized protein YP_004251425.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: bfr:BF3921 UDP-glucuronic acid epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate 4-epimerase; SPTR: uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase YP_004251426.1 COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: bfs:BF1904 LPS biosynthesis related UDP-glucose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: uncharacterized protein; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004251427.1 KEGG: bfs:BF1368 LPS biosynthesis related transcriptional regulatory protein; SPTR: uncharacterized protein YP_004251428.1 COGs: COG0084 Mg-dependent DNase; InterPro IPR001130; KEGG: bth:BT_3229 TatD-related DNase; PFAM: Deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; PFAM: TatD related DNase YP_004251429.1 COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594; KEGG: pdi:BDI_2881 ThiF family protein, dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: uncharacterized protein; PFAM: ThiF family YP_004251430.1 InterPro IPR006628; KEGG: chu:CHU_2220 hypothetical protein; SMART: PUR-alpha/beta/gamma, DNA/RNA-binding; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3276) YP_004251431.1 COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002306: IPR002305; KEGG: pgn:PGN_0137 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase YP_004251432.1 COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; HAMAP: Bacterial DNA recombination protein RuvA; InterPro IPR000085: IPR003583: IPR013849: IPR011114; KEGG: bth:BT_1978 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Bacterial DNA recombination protein RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit YP_004251433.1 KEGG: pdi:BDI_2659 hypothetical protein; SPTR: uncharacterized protein YP_004251434.1 KEGG: pdi:BDI_2659 hypothetical protein; SPTR: Gliding motility protein SprA YP_004251435.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: cpi:Cpin_0418 beta-lactamase domain protein; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily YP_004251436.1 COGs: COG0775 Nucleoside phosphorylase; InterPro IPR010049: IPR000845; KEGG: bvu:BVU_0894 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: Nucleoside phosphorylase; PRIAM: Adenosylhomocysteine nucleosidase; SPTR: uncharacterized protein; TIGRFAM: MTA/SAH nucleosidase; PFAM: Phosphorylase superfamily; TIGRFAM: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_004251437.1 COGs: COG1854 LuxS protein involved in autoinducer AI2 synthesis; HAMAP: S-ribosylhomocysteinase (LuxS); InterPro IPR003815; KEGG: pgi:PG0498 S-ribosylhomocysteinase; PFAM: S-ribosylhomocysteinase (LuxS); PRIAM: S-ribosylhomocysteine lyase; SPTR: S-ribosylhomocysteine lyase; PFAM: S-Ribosylhomocysteinase (LuxS) YP_004251438.1 KEGG: pgn:PGN_0852 immunoreactive 47 kDa antigen; SPTR: Immunoreactive 47 kDa antigen YP_004251439.1 KEGG: pgn:PGN_1435 hypothetical protein; SPTR: uncharacterized protein YP_004251440.1 InterPro IPR006628; KEGG: chu:CHU_2220 hypothetical protein; SMART: PUR-alpha/beta/gamma, DNA/RNA-binding; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3276) YP_004251441.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; HAMAP: UbiE/COQ5 methyltransferase; InterPro IPR004033; KEGG: cpi:Cpin_7094 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: UbiE/COQ5 methyltransferase; PFAM: ubiE/COQ5 methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases YP_004251442.1 COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro IPR004657: IPR000537; KEGG: zpr:ZPR_3065 1,4-dihydroxy-2-naphthoateoctaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR:1,4-dihydroxy-2-naphthoateoctaprenyltransferas e; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_004251443.1 COGs: COG2235 Arginine deiminase; InterPro IPR003198; KEGG: ttr:Tter_0565 arginine deiminase; PFAM: Amidinotransferase; PRIAM: Arginine deiminase; SPTR: Arginine deiminase; PFAM: Amidinotransferase YP_004251444.1 COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR006669: IPR000644: IPR006668: IPR006667; KEGG: bvu:BVU_1924 Mg2+ transporter MgtE; PFAM: Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core; MgtE magnesium transporter, integral membrane region; SPTR: uncharacterized protein; TIGRFAM: Divalent cation transporter; PFAM: MgtE intracellular N domain; Divalent cation transporter; CBS domain; TIGRFAM: Mg2+ transporter (mgtE) YP_004251445.1 COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); HAMAP: Ribosomal RNA adenine dimethylase; InterPro IPR011530: IPR020598: IPR001737; KEGG: pdi:BDI_2584 dimethyladenosine transferase; PFAM: Ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; SPTR: Dimethyladenosine transferase; TIGRFAM: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase YP_004251446.1 InterPro IPR005242; KEGG: cpi:Cpin_3687 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein YP_004251447.1 COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; HAMAP: rRNA small subunit methyltransferase G; InterPro IPR003682; KEGG: zpr:ZPR_0941 glucose-inhibited division protein B; PFAM: rRNA small subunit methyltransferase G; SPTR: Ribosomal RNA small subunit methyltransferase G; TIGRFAM: rRNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB YP_004251448.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR014327: IPR007627: IPR013249; KEGG: bvu:BVU_1982 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004251449.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0442 FecR protein; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004251450.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: bth:BT_3279 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: SusC homolog; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004251451.1 InterPro IPR019734: IPR012944; KEGG: bth:BT_3280 hypothetical protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain-containing protein; PFAM: SusD family YP_004251452.1 KEGG: bth:BT_3281 hypothetical protein; SPTR: uncharacterized protein YP_004251453.1 InterPro IPR001818; KEGG: bth:BT_3282 hypothetical protein; PFAM: Peptidase M10, metallopeptidase; SPTR: uncharacterized protein; PFAM: Matrixin YP_004251454.1 KEGG: cgr:CAGL0D02068g hypothetical protein; SPTR: Similar to uniprot|P36000 Saccharomyces cerevisiae YKL135c APL2 YP_004251455.1 KEGG: tan:TA11715 importin-like protein; SPTR: Importin-like protein YP_004251456.1 KEGG: fgr:FG03317.1 hypothetical protein YP_004251457.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: pdi:BDI_3589 transcriptional repressor; PFAM: ROK; PRIAM: Glucokinase; SPTR: Glucokinase; PFAM: ROK family; TIGRFAM: ROK family protein ( glucokinase) YP_004251458.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661: IPR003594: IPR001789: IPR018060: IPR 011110: IPR011123: IPR000005; KEGG: bfs:BF0276 two-component system sensor histidine kinase/response regulator fusion protein; PFAM: ATPase-like, ATP-binding domain; Two component regulator three Y; Two component regulator propeller; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; Helix-turn-helix, AraC type; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; Helix-turn-helix, AraC domain; SPTR: two-component system sensor histidine kinase/response regulator fusion protein; PFAM: Y_Y_Y domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; Two component regulator propeller; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turn-helix proteins, AraC family YP_004251459.1 COGs: COG3940 beta-xylosidase; InterPro IPR006710; KEGG: bth:BT_3515 glycosylhydrolase; PFAM: Glycoside hydrolase, family 43; PRIAM: Alpha-N-arabinofuranosidase; SPTR: Putatuve glycosylhydrolase; PFAM: Glycosyl hydrolases family 43 YP_004251460.1 COGs: COG3538 conserved hypothetical protein; InterPro IPR006311: IPR008313; KEGG: pdi:BDI_0361 hypothetical protein; PFAM: Uncharacterised conserved protein UCP028846; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1237); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004251461.1 COGs: COG0738 Fucose permease; InterPro IPR011701; KEGG: bth:BT_2106 transmembrane hexose transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: transmembrane hexose transporter; PFAM: Major Facilitator Superfamily YP_004251462.1 COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR019822: IPR002033; KEGG: bvu:BVU_3808 sec-independent protein translocase; PFAM: Sec-independent periplasmic protein translocase; SPTR: Twin arginine-targeting protein translocase TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent protein translocase (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC YP_004251463.1 HAMAP: Twin-arginine translocation protein TatA/E; InterPro IPR006312: IPR003369; KEGG: pdi:BDI_1759 sec-independent protein translocase; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; SPTR: Sec-independent protein translocase tatA/E homolog; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_004251464.1 COGs: COG1158 Transcription termination factor; InterProIPR004665: IPR011129: IPR003593: IPR011112: IPR 011113: IPR000194; KEGG: pdi:BDI_1398 transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; SMART: Cold shock protein; ATPase, AAA+ type, core; SPTR: Transcription termination factor Rho; TIGRFAM: Transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho YP_004251465.1 COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: bfs:BF4052 transposase; PFAM: Transposase, IS4-like; SPTR: ISNCY family transposase; PFAM: Transposase DDE domain; Transposase domain (DUF772) YP_004251466.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bvu:BVU_3786 hypothetical protein; SPTR: uncharacterized protein YP_004251467.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR011895: IPR002880: IPR019752: IPR019456: IPR 011766; KEGG: bfs:BF3168 pyruvate-flavodoxin oxidoreductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Pyruvate dehydrogenase (NADP(+)); SPTR: Pyruvate-flavodoxin oxidoreductase; TIGRFAM: Pyruvate-flavodoxin oxidoreductase; PFAM: domain; Domain of unknown function; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric YP_004251468.1 InterPro IPR004843; KEGG: pdi:BDI_1504 hypothetical protein; PFAM: Metallophosphoesterase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Calcineurin-like phosphoesterase YP_004251470.1 COGs: COG0784 FOG: CheY-like receiver; InterPro IPR001789; KEGG: pdi:BDI_3205 two-component hybrid sensor kinase/response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system sensor histidine kinase; PFAM: Response regulator receiver domain YP_004251471.1 KEGG: bvu:BVU_1282 hypothetical protein; SPTR: uncharacterized protein YP_004251472.1 COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: bth:BT_0123 NADH-ubiquinone oxidoreductase subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; SPTR: NADH-ubiquinone oxidoreductase subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit YP_004251473.1 COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterProIPR013352: IPR001041: IPR019574: IPR004108: IPR 003149; KEGG: bth:BT_0124 NADH:ubiquinone oxidoreductase subunit; PFAM: Iron hydrogenase, large subunit, C-terminal; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; Iron hydrogenase, small subunit-like; PRIAM: Ferredoxin hydrogenase; SPTR: uncharacterized protein; TIGRFAM: Iron hydrogenase, subset; PFAM: Iron only hydrogenase large subunit, C-terminal domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Iron hydrogenase small subunit; 4Fe-4S binding domain; TIGRFAM: hydrogenases, Fe-only YP_004251474.1 COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR011538: IPR019554: IPR019575; KEGG: bth:BT_0125 NADH:ubiquinone oxidoreductase subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: Protein HymB; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain YP_004251475.1 KEGG: pdi:BDI_1042 NADP-reducing hydrogenase subunit B; SPTR: uncharacterized protein YP_004251476.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: toc:Toce_0694 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004251477.1 COGs: COG1379 conserved hypothetical protein; InterPro IPR003141: IPR004013; KEGG: pdi:BDI_1093 metal-dependent phosphoesterase; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: Phosphoesterase PHP; PFAM: PHP domain YP_004251478.1 KEGG: pdi:BDI_1094 thiamine biosynthesis protein ThiC; SPTR: uncharacterized protein; PFAM: DRTGG domain YP_004251479.1 COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterPro IPR007202; KEGG: ssm:Spirs_3657 Fe-S cluster domain protein; PFAM: Fe-S cluster; SPTR: uncharacterized protein; PFAM: Iron only hydrogenase large subunit, C-terminal domain; Fe-S cluster YP_004251480.1 COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); InterPro IPR003594; KEGG: pdi:BDI_1096 anti-sigma regulatory factor; PFAM: ATPase-like, ATP-binding domain; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004251481.1 KEGG: pdi:BDI_1097 hypothetical protein; SPTR: uncharacterized protein; PFAM: DRTGG domain YP_004251482.1 KEGG: pdi:BDI_0472 hypothetical protein; SPTR: uncharacterized protein YP_004251483.1 KEGG: bfs:BF1044 hypothetical protein; SPTR: uncharacterized protein YP_004251484.1 KEGG: ngr:NAEGRDRAFT_57217 hypothetical protein; SPTR: Universal stress protein YP_004251485.1 KEGG: bfr:BF1139 hypothetical protein; SPTR: uncharacterized protein YP_004251486.1 COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); HAMAP: DNA ligase; InterProIPR001679: IPR013840: IPR003583: IPR001357: IPR 013839: IPR004150: IPR004149: IPR000445; KEGG: zpr:ZPR_3580 DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; Helix-hairpin-helix motif; BRCT; SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; SPTR: DNA ligase; TIGRFAM: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; NAD-dependent DNA ligase C4 zinc finger domain; TIGRFAM: DNA ligase, NAD-dependent YP_004251487.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593: IPR004176: IPR003959: IPR001943: IPR 013093: IPR019489; KEGG: pdi:BDI_1089 negative regulator of genetic competence; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: Negative regulator of genetic competence; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; UvrB/uvrC motif; ATPase associated with various cellular activities (AAA) YP_004251488.1 COGs: COG1522 Transcriptional regulators; InterPro IPR019888: IPR019887; KEGG: cat:CA2559_01670 AsnC family regulatory protein; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; SPTR: AsnC family regulatory protein; PFAM: AsnC family YP_004251489.1 KEGG: sli:Slin_5507 transcriptional regulator, TetR family; SPTR: Transcriptional regulator, TetR family YP_004251490.1 InterPro IPR002591; KEGG: cat:CA2559_07660 alkaline phosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: alkaline phosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase YP_004251491.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: pdi:BDI_0734 DNA resolvase; PFAM: Resolvase, N-terminal; SPTR: DNA resolvase; PFAM: Resolvase, N terminal domain YP_004251492.1 COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; InterPro IPR012910: IPR000531; KEGG: bfr:BF1923 TonB-dependent outer membrane protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004251493.1 InterPro IPR012910: IPR000531; KEGG: bfr:BF1924 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004251494.1 KEGG: bfs:BF1993 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004251495.1 KEGG: bfs:BF1994 hypothetical protein; SPTR: uncharacterized protein YP_004251496.1 KEGG: bfr:BF1927 hypothetical protein; SPTR: uncharacterized protein YP_004251497.1 KEGG: bfr:BF1928 hypothetical protein; SPTR: uncharacterized protein YP_004251498.1 KEGG: bfs:BF1997 hypothetical protein; SPTR: uncharacterized protein YP_004251499.1 InterPro IPR003961; KEGG: bfs:BF1998 hypothetical protein; PFAM: Fibronectin, type III; SMART: Fibronectin, type III; SPTR: uncharacterized protein; PFAM: Carbohydrate binding domain; Fibronectin type III domain YP_004251500.1 KEGG: bfs:BF1999 hypothetical protein; SPTR: uncharacterized protein YP_004251501.1 KEGG: pmo:Pmob_0299 transposase IS204/IS1001/IS1096/IS1165 family protein; SPTR: Transposase IS204/IS1001/IS1096/IS1165 family protein YP_004251502.1 KEGG: spc:Sputcn32_3991 phage transcriptional regulator, AlpA; SPTR: DNA binding domain, excisionase; TIGRFAM: DNA binding domain, excisionase YP_004251503.1 KEGG: fjo:Fjoh_1540 hypothetical protein; SPTR: Gliding motility protein GldD YP_004251504.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR019862: IPR000644: IPR002550: IPR005170; KEGG: pdi:BDI_1992 hemolysin-related protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SPTR: uncharacterized protein; TIGRFAM: Gliding motility-associated protein GldE; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; TIGRFAM: gliding motility-associated protein GldE YP_004251505.1 COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477: IPR000442; KEGG: bth:BT_2602 maturase/reverse transcriptase; PFAM: RNA-directed DNA polymerase (reverse transcriptase); Intron maturase, type II; SPTR: uncharacterized protein; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Type II intron maturase YP_004251506.1 COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344: IPR000424; KEGG: bfs:BF1571 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_004251507.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: phe:Phep_0128 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Histone family protein DNA-binding protein; PFAM: Bacterial DNA-binding protein YP_004251508.1 COGs: COG1530 Ribonuclease G and E; InterPro IPR004659: IPR003029: IPR019307; KEGG: bfs:BF1566 ribonuclease E; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain; SPTR: Ribonuclease G; TIGRFAM: Ribonuclease E/G; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family YP_004251509.1 COGs: COG4232 Thiol:disulfide interchange protein; KEGG: gfo:GFO_1278 thiol:disulfide interchange protein DsbD 1; PRIAM: Protein-disulfide reductase; SPTR: Thiol:disulfide interchange protein DsbD 1; PFAM: Cytochrome C biogenesis protein transmembrane region; Protein of unknown function, DUF255 YP_004251510.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: bfs:BF0198 extracytoplasmic function alternative sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004251511.1 KEGG: bfs:BF0199 hypothetical protein; SPTR: uncharacterized protein YP_004251512.1 KEGG: cpi:Cpin_5460 hypothetical protein; SPTR: uncharacterized protein YP_004251513.1 KEGG: fbc:FB2170_13763 hypothetical protein; SPTR: uncharacterized protein YP_004251514.1 KEGG: bfs:BF0842 hypothetical protein; SPTR: uncharacterized protein YP_004251515.1 KEGG: bth:BT_0869 hypothetical protein; SPTR: uncharacterized protein YP_004251516.1 InterPro IPR000595; KEGG: bfs:BF2344 DNA-binding protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain YP_004251517.1 COGs: COG0012 GTPase probable translation factor; InterPro IPR004396: IPR002917: IPR013029; KEGG: pgi:PG0048 GTP-dependent nucleic acid-binding protein EngD; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF YP_004251518.1 InterPro IPR013148; KEGG: bfs:BF3514 hypothetical protein; PFAM: Glycosyl hydrolases family 32, N-terminal; SPTR: uncharacterized protein; PFAM: Glycosyl hydrolases family 43 YP_004251519.1 COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: bfs:BF0292 exported endo-arabinase; PFAM: Glycoside hydrolase, family 43; SPTR: exported endo-arabinase; PFAM: Glycosyl hydrolases family 43 YP_004251520.1 COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: bth:BT_0356 aldose 1-epimerase precursor; PFAM: Aldose 1-epimerase; PRIAM: Aldose 1-epimerase; SPTR: Aldose 1-epimerase; PFAM: Aldose 1-epimerase YP_004251521.1 InterPro IPR012878; KEGG: bth:BT_3531 hypothetical protein; PFAM: Protein of unknown function DUF1680; SPTR: uncharacterized protein; PFAM: glycosyl hydrolase of unknown function (DUF1680) YP_004251522.1 COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: chu:CHU_2699 gliding motility-related protein; outer membrane protein; PFAM: Outer membrane lipoprotein carrier protein LolA; SPTR: Gliding motility-related protein; possible outer membrane protein; PFAM: Outer membrane lipoprotein carrier protein LolA YP_004251523.1 COGs: COG1624 conserved hypothetical protein; InterPro IPR014046: IPR003390; KEGG: gfo:GFO_0428 hypothetical protein; PFAM: DNA integrity scanning protein, DisA, N-terminal; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00159; PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: conserved hypothetical protein TIGR00159 YP_004251524.1 COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; HAMAP: SAICAR synthetase; InterPro IPR001636; KEGG: pgn:PGN_0976 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004251525.1 COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: dfe:Dfer_1072 PhoH family protein; PFAM: PhoH-like protein; SPTR: uncharacterized protein; PFAM: PhoH-like protein YP_004251526.1 COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR011551: IPR004518; KEGG: pdi:BDI_3792 nucleoside triphosphate pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: uncharacterized protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein YP_004251527.1 KEGG: pla:Plav_2977 DNA ligase D; SPTR: DNA ligase D YP_004251528.1 COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR001041: IPR013027: IPR007419: IPR006076; KEGG: pdi:BDI_1022 proline dehydrogenase, alpha subunit; PFAM: FAD dependent oxidoreductase; BFD-like [2Fe-2S]-binding domain; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Ferredoxin; SPTR: Proline dehydrogenase alpha subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S] binding domain; FAD dependent oxidoreductase YP_004251529.1 COGs: COG2996 conserved hypothetical protein; KEGG: pdi:BDI_1474 hypothetical protein; SPTR: uncharacterized protein YP_004251530.1 COGs: COG2884 ATPase involved in cell division; InterPro IPR003593: IPR003439; KEGG: rbi:RB2501_10417 ATP-binding protein involved in cell division; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ATP-binding protein involved in cell division; PFAM: ABC transporter YP_004251531.1 COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: coc:Coch_0333 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase; TIGRFAM: ribulose-phosphate 3-epimerase YP_004251532.1 COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: fbc:FB2170_02875 hexapeptide transferase; SPTR: Acetyltransferase/carbonic anhydrase YP_004251533.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: chu:CHU_0233 small heat shock protein; PFAM: Heat shock protein Hsp20; SPTR: Small heat shock protein; PFAM: Hsp20/alpha crystallin family YP_004251534.1 COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883; KEGG: bfs:BF0669 glycosyl hydrolase, beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; SPTR: uncharacterized protein; PFAM: Glycosyl hydrolase 20, catalytic domain YP_004251535.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004251536.1 COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; InterPro IPR003593: IPR002121; KEGG: pdi:BDI_1940 helicase; PFAM: Helicase/RNase D C-terminal, HRDC domain; SMART: Helicase/RNase D C-terminal, HRDC domain; ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: PIF1 helicase; HRDC domain YP_004251537.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: fbc:FB2170_06640 ROK family member transcriptional repressor; PFAM: ROK; SPTR: ROK family member transcriptional repressor; PFAM: ROK family YP_004251538.1 KEGG: bth:BT_0805 hypothetical protein; SPTR: Inner membrane protein YhiM; PFAM: Protein of unknown function (DUF2776) YP_004251539.1 COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593: IPR008824: IPR003959; KEGG: bth:BT_1205 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: MgsA AAA+ ATPase C terminal; ATPase associated with various cellular activities (AAA) YP_004251540.1 COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006269: IPR006218; KEGG: bvu:BVU_3582 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-8-phosphooctulonate synthase; SPTR: 3-deoxy-8-phosphooctulonate synthase; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase YP_004251541.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550: IPR000644: IPR005170; KEGG: pdi:BDI_0837 hemolysins; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SPTR: hemolysins; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain YP_004251542.1 COGs: COG1193 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 2; InterPro IPR007696: IPR000432: IPR002625: IPR005747; KEGG: bth:BT_4680 DNA mismatch repair protein MutS; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; SPTR: uncharacterized protein; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein YP_004251543.1 InterPro IPR011467; KEGG: pdi:BDI_3745 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1573) YP_004251544.1 InterPro IPR011467; KEGG: pdi:BDI_3745 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1573) YP_004251545.1 COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR005290: IPR000589; KEGG: bvu:BVU_0896 30S ribosomal protein S15; PFAM: Ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle YP_004251546.1 COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: Polyribonucleotide nucleotidyltransferase; InterProIPR012162: IPR004087: IPR001247: IPR015847: IPR 015848: IPR018111: IPR003029; KEGG: pdi:BDI_2760 polynucleotide phosphorylase/polyadenylase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; PRIAM: Polyribonucleotide nucleotidyltransferase; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: Polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease, domain 1; 3' exoribonuclease, domain 2; Polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase YP_004251547.1 COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: bth:BT_1274 L-fuculose-1-phosphate aldolase; PFAM: Class II aldolase/adducin, N-terminal; SPTR: L-fuculose-1-phosphate aldolase; PFAM: Class II Aldolase and Adducin N-terminal domain YP_004251549.1 COGs: COG1995 Pyridoxal phosphate biosynthesis protein; InterPro IPR005255; KEGG: pdi:BDI_0187 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: uncharacterized protein; manually curated; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_004251551.1 KEGG: bfr:BF0465 hypothetical protein; SPTR: uncharacterized protein YP_004251552.1 KEGG: pdi:BDI_3090 hypothetical protein; SPTR: uncharacterized protein YP_004251553.1 KEGG: mev:Metev_1505 hypothetical protein; SPTR: uncharacterized protein YP_004251554.1 KEGG: pdi:BDI_3422 hypothetical protein; SPTR: uncharacterized protein YP_004251555.1 KEGG: pdi:BDI_3423 hypothetical protein; SPTR: uncharacterized protein YP_004251556.1 KEGG: ajs:Ajs_2448 hypothetical protein; SPTR: uncharacterized protein YP_004251557.1 KEGG: bfs:BF0270 hemolysin A; SPTR: uncharacterized protein YP_004251558.1 InterPro IPR005077; KEGG: pdi:BDI_3271 clostripain-related protein; PFAM: Peptidase C11, clostripain; SPTR: uncharacterized protein; PFAM: Clostripain family YP_004251559.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: bfr:BF0698 DNA-damage-inducible protein F; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: DNA-damage-inducible protein F; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004251560.1 COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: cth:Cthe_2058 Appr-1-p processing protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing; SPTR: uncharacterized protein; PFAM: Macro domain YP_004251561.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: cpi:Cpin_4186 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Inner membrane transporter YnfM; PFAM: Major Facilitator Superfamily YP_004251562.1 COGs: COG0366 Glycosidase; InterPro IPR006589: IPR006047; KEGG: pdi:BDI_0931 cytoplasmic alpha-amylase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; PRIAM: Glucan 1,4-alpha-maltohexaosidase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Glycoside hydrolase 13, candidate alpha-amylase; PFAM: Alpha amylase, catalytic domain; Domain of unknown function (DUF1939) YP_004251563.1 COGs: COG0366 Glycosidase; InterPro IPR006589: IPR006047; KEGG: pdi:BDI_0930 glycoside hydrolase alpha-glucosidase; PFAM: Glycosyl hydrolase, family 13, catalytic domain; PRIAM: Oligo-1,6-glucosidase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Glycoside hydrolase alpha-glucosidase; PFAM: Alpha amylase, catalytic domain YP_004251564.1 COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001: IPR001650: IPR000330; KEGG: phe:Phep_4161 SNF2-related protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: SNF2-related protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_004251565.1 InterPro IPR014127; KEGG: fbc:FB2170_10686 hypothetical protein; PFAM: Conserved hypothetical protein CHP02757; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02757; PFAM: Protein of unknown function (DUF2400); TIGRFAM: conserved hypothetical protein TIGR02757 YP_004251566.1 COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: fbc:FB2170_01150 hypothetical protein; PFAM: Protein of unknown function DUF752; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF752) YP_004251567.1 COGs: COG2008 Threonine aldolase; InterPro IPR001597; KEGG: tjr:TherJR_2416 aromatic amino acid beta-eliminating lyase/threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Threonine aldolase; SPTR: Aromatic amino acid beta-eliminating lyase/threonine aldolase; PFAM: Beta-eliminating lyase YP_004251568.1 COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: cvi:CV_2967 ubiquinone biosynthesis protein; PFAM: ABC-1; SPTR: Ubiquinone biosynthesis protein; PFAM: ABC1 family YP_004251569.1 KEGG: pno:SNOG_12560 hypothetical protein; SPTR: uncharacterized protein YP_004251570.1 COGs: COG2985 permease; InterPro IPR006512: IPR006037; KEGG: pdi:BDI_1750 hypothetical protein; PFAM: YidE/YbjL duplication; Regulator of K+ conductance, C-terminal; SPTR: uncharacterized protein; TIGRFAM: YidE/YbjL duplication; PFAM: Predicted Permease Membrane Region; TrkA-C domain; TIGRFAM: AspT/YidE/YbjL antiporter duplication domain YP_004251571.1 COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: fps:FP0769 cell wall-associated hydrolase; PFAM: NLP/P60; SPTR: Lipoprotein; possible cell wall-associated hydrolase; PFAM: NlpC/P60 family YP_004251572.1 InterPro IPR014985; KEGG: pru:PRU_2447 hypothetical protein; PFAM: WbqC-like protein family; SPTR: uncharacterized protein; PFAM: WbqC-like protein family YP_004251573.1 COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR006589: IPR004193: IPR006047: IPR006048; KEGG: coc:Coch_0990 alpha amylase all-beta; PFAM: Alpha-amylase, C-terminal all beta; Glycosyl hydrolase, family 13, catalytic domain; Glycoside hydrolase, family 13, N-terminal; PRIAM: 1,4-alpha-glucan branching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; SPTR: Alpha amylase all-beta; PFAM: Alpha amylase, C-terminal all-beta domain; Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YP_004251574.1 COGs: COG3408 Glycogen debranching protein; InterPro IPR006451: IPR010401; KEGG: coc:Coch_0988 amylo-alpha-16-glucosidase; PFAM: Amylo-alpha-1,6-glucosidase; SPTR: uncharacterized protein; TIGRFAM: Glycogen debranching enzyme, archaeal type; PFAM: Amylo-alpha-1,6-glucosidase; Glycogen debranching enzyme N terminal; TIGRFAM: glycogen debranching enzyme, archaeal type YP_004251575.1 COGs: COG0438 Glycosyltransferase; InterPro IPR013534: IPR001296; KEGG: coc:Coch_0986 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; Starch synthase, catalytic domain; SPTR: Glycosyl transferase group 1; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1 YP_004251576.1 COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300; KEGG: coc:Coch_0985 alpha-amylase; PFAM: Glycoside hydrolase, family 57, core; PRIAM: Alpha-amylase; SPTR: Alpha-amylase/alpha-mannosidase; PFAM: Glycosyl hydrolase 57 YP_004251577.1 COGs: COG0058 Glucan phosphorylase; InterPro IPR011834: IPR001296: IPR000811; KEGG: coc:Coch_1285 alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35; Glycosyl transferase, group 1; PRIAM: Glycogen(starch) synthase., Phosphorylase; SPTR: Alpha-glucan phosphorylase; TIGRFAM: Alpha-glucan phosphorylase; PFAM: Carbohydrate phosphorylase; Glycogen synthase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases YP_004251578.1 COGs: COG1435 Thymidine kinase; HAMAP: Thymidine kinase, subgroup; InterPro IPR020634: IPR001267; KEGG: bvu:BVU_1836 thymidine kinase; PFAM: Thymidine kinase; PRIAM: Thymidine kinase; SPTR: Thymidine kinase; PFAM: Thymidine kinase YP_004251579.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR014327: IPR007627: IPR013249; KEGG: bth:BT_3269 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004251580.1 COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR005887: IPR012939; KEGG: bvu:BVU_0752 glycoside hydrolase; PFAM: Glycosyl hydrolase 92; SPTR: Glycoside hydrolase 92; TIGRFAM: Alpha-1,2-mannosidase, PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase YP_004251582.1 KEGG: bth:BT_0703 hypothetical protein; SPTR: uncharacterized protein YP_004251583.1 COGs: COG0514 Superfamily II DNA helicase; InterProIPR018329: IPR014001: IPR001650: IPR011545: IPR 000212; KEGG: dsy:DSY0718 hypothetical protein; PFAM: DNA/RNA helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA helicase, UvrD/REP type; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain protein; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: Helicase conserved C-terminal domain; UvrD/REP helicase; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family YP_004251584.1 COGs: COG0443 Molecular chaperone; HAMAP: Chaperone DnaK; InterPro IPR012725: IPR013126; KEGG: pdi:BDI_1997 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein dnaK; TIGRFAM: Chaperone DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK YP_004251586.1 COGs: COG0498 Threonine synthase; InterPro IPR001926; KEGG: mac:MA3297 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; SPTR: uncharacterized protein; TIGRFAM: cysteate synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteate synthase YP_004251587.1 COGs: COG1295 membrane protein; InterPro IPR017039: IPR004664; KEGG: sat:SYN_02541 ribonuclease BN family membrane protein; PFAM: Ribonuclease BN-related; SPTR: Ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN) YP_004251588.1 KEGG: fbc:FB2170_10364 hypothetical protein; SPTR: uncharacterized protein YP_004251589.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: pdi:BDI_3493 hypothetical protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: uncharacterized protein; manually curated; PFAM: Predicted permease YjgP/YjgQ family YP_004251590.1 COGs: COG0223 Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; InterPro IPR005794: IPR002376: IPR005793; KEGG: phe:Phep_1221 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; PRIAM: Methionyl-tRNA formyltransferase; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: Methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase YP_004251591.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR014284: IPR014327: IPR000792: IPR007627: IPR 013249; KEGG: bth:BT_3269 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004251592.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_2245 FecR protein; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004251593.1 InterPro IPR012910: IPR000531; KEGG: bth:BT_3279 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004251594.1 InterPro IPR012944; KEGG: bth:BT_3280 hypothetical protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; PFAM: SusD family YP_004251595.1 KEGG: cgr:CAGL0G10087g hypothetical protein; SPTR: uncharacterized protein YP_004251596.1 InterPro IPR011871; KEGG: cpb:Cphamn1_1563 major paralogous domain; SPTR: Major paralogous domain; PFAM: Fibrobacter succinogenes major domain (Fib_succ_major); TIGRFAM: Fibrobacter succinogenes major paralogous domain YP_004251597.1 KEGG: phe:Phep_0908 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; SPTR: uncharacterized protein YP_004251598.1 COGs: COG1484 DNA replication protein; InterPro IPR003593: IPR002611; KEGG: nha:Nham_2786 IstB-like ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: Y4pL; PFAM: IstB-like ATP binding protein YP_004251599.1 COGs: COG0225 Peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulphoxide reductase MsrA; Peptide methionine sulfoxide reductase msrB; InterPro IPR002569: IPR002579; KEGG: bth:BT_2499 bifunctional methionine sulfoxide reductase A/B protein; PFAM: Methionine sulphoxide reductase B; Peptide methionine sulphoxide reductase MsrA; PRIAM: Peptide-methionine (S)-S-oxide reductase., Peptide-methionine (R)-S-oxide reductase; SPTR: uncharacterized protein; TIGRFAM: Methionine sulphoxide reductase B; Peptide methionine sulphoxide reductase MsrA; PFAM: SelR domain; Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; methionine-R-sulfoxide reductase YP_004251600.1 KEGG: edi:EDI_049610 hypothetical protein; SPTR: uncharacterized protein YP_004251601.1 COGs: COG3004 Na+/H+ antiporter; HAMAP: Na+/H+ antiporter NhaA; InterPro IPR004670; KEGG: bfs:BF2579 Na+/H+ antiporter; PFAM: Na+/H+ antiporter NhaA; SPTR: Na(+)/H(+) antiporter nhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA YP_004251602.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: bfs:BF3259 UDP-glucuronic acid epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate 4-epimerase; SPTR: uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase YP_004251603.1 COGs: COG0621 2-methylthioadenine synthetase; InterProIPR013848: IPR007197: IPR006638: IPR005839: IPR 006467; KEGG: bvu:BVU_0008 Fe-S oxidoreductase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; TIGRFAM: MiaB-like tRNA modifying enzyme; Methylthiotransferase; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family YP_004251604.1 COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: pdi:BDI_2636 glycosyltransferase lipid-alpha-disaccharide synthase; PFAM: Glycosyl transferase, family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Glycosyltransferase 19, candidate lipid-alpha-disaccharide synthase; TIGRFAM: Glycosyl transferase, family 19; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase YP_004251605.1 KEGG: pdi:BDI_0798 hypothetical protein; SPTR: uncharacterized protein YP_004251606.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: pdi:BDI_3352 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein YP_004251607.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: pdi:BDI_3353 periplasmic component of efflux system; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004251608.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: bth:BT_1214 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: ABC transporter YP_004251609.1 COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: pdi:BDI_3355 ABC transporter permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004251610.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: pdi:BDI_3356 two-component system sensor histidine kinase; PFAM: Signal transduction histidine kinase, internal region; SPTR: uncharacterized protein; PFAM: Histidine kinase YP_004251611.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: bth:BT_1217 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_004251612.1 COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153: IPR006037; KEGG: bvu:BVU_3827 Na+/H+ anitporter; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; SPTR: uncharacterized protein; PFAM: TrkA-C domain; Sodium/hydrogen exchanger family YP_004251613.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: pdi:BDI_3676 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004251614.1 KEGG: pdi:BDI_1797 ferredoxin, iron-sulfur protein; SPTR: uncharacterized protein YP_004251615.1 KEGG: bth:BT_4324 hypothetical protein; SPTR: TonB-dependent receptor plug domain protein; PFAM: MG2 domain YP_004251616.1 InterPro IPR000525; KEGG: bth:BT_p548205 replication protein B; PFAM: Initiator Rep protein; SPTR: Initiator RepB protein; PFAM: Initiator Replication protein YP_004251617.1 KEGG: azc:AZC_0544 hypothetical protein; SPTR: uncharacterized protein YP_004251618.1 KEGG: dmo:Dmoj_GI24521 GI24521 gene product from transcript GI24521-RA; SPTR: GI24521 YP_004251619.1 KEGG: lrl:LC705_00820 glycosyl transferase group 1 YP_004251620.1 KEGG: nve:NEMVE_v1g197215 hypothetical protein; SPTR: uncharacterized protein YP_004251621.1 KEGG: cjj:CJJ81176_0023 homoserine O-acetyltransferase; SPTR: Coenzyme F420-reducing hydrogenase, beta subunit YP_004251622.1 KEGG: tan:TA12220 hypothetical protein; SPTR: uncharacterized protein YP_004251623.1 KEGG: bth:BT_1894 TPR repeat-containing protein; SPTR: TPR-repeat-containing protein YP_004251624.1 KEGG: ath:AT5G10030 TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor; SPTR: uncharacterized protein YP_004251625.1 COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: pdi:BDI_0207 peptidyl-dipeptidase; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Peptidyl-dipeptidase Dcp; PFAM: Peptidase M3 YP_004251626.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: bfs:BF0503 ECF-type RNA polymerase sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004251627.1 COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015882: IPR015883; KEGG: fjo:Fjoh_4808 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Beta-N-acetylhexosaminidase, subunit a/b; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Candidate beta-N-acetylglucosaminidase; Glycoside hydrolase 20; PFAM: Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2 YP_004251628.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR000792: IPR014284; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004251629.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0442 FecR protein; PFAM: FecR protein; SPTR: FecR protein; PFAM: FecR protein YP_004251630.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004251631.1 COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: bfs:BF1306 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: uncharacterized protein; PFAM: Endonuclease/Exonuclease/phosphatase YP_004251632.1 KEGG: fjo:Fjoh_2780 thioredoxin-related protein-like protein; SPTR: Thioredoxin-related protein-like protein YP_004251633.1 KEGG: cpi:Cpin_5954 aromatic hydrocarbon degradation membrane protein; SPTR: Membrane protein involved in aromatic hydrocarbon degradation; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX) YP_004251634.1 KEGG: hya:HY04AAS1_0060 phosphoesterase DHHA1 YP_004251635.1 KEGG: fsu:Fisuc_0058 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF748) YP_004251636.1 COGs: COG0761 Penicillin tolerance protein; HAMAP: LytB protein; InterPro IPR003451; KEGG: bfs:BF3536 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: LytB protein; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) YP_004251637.1 COGs: COG0205 6-phosphofructokinase; HAMAP: 6-phosphofructokinase; InterPro IPR000023: IPR012828; KEGG: bfs:BF3537 6-phosphofructokinase; PFAM: Phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase YP_004251638.1 COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR011545: IPR001650: IPR014001: IPR005259; KEGG: bvu:BVU_1471 primosomal protein N'; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: uncharacterized protein; TIGRFAM: Primosomal protein n; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N' YP_004251639.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR007627: IPR013249: IPR000792: IPR014284: IPR 014327; KEGG: bvu:BVU_0609 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004251640.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0955 FecR protein; PFAM: FecR protein; SPTR: FecR protein; PFAM: FecR protein YP_004251641.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662: IPR012910: IPR000531; KEGG: phe:Phep_0725 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_004251642.1 KEGG: pdi:BDI_3168 hemolysin secretion transport system membrane protein; SPTR: uncharacterized protein YP_004251643.1 COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR005074: IPR001140: IPR003439: IPR003593; KEGG: pdi:BDI_3664 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: Peptidase C39 family; ABC transporter; ABC transporter transmembrane region YP_004251644.1 KEGG: cpi:Cpin_2740 TonB-dependent receptor plug; SPTR: uncharacterized protein YP_004251645.1 KEGG: bfs:BF3280 hypothetical protein; SPTR: DNA binding protein, excisionase YP_004251646.1 KEGG: pmz:HMPREF0659_A7038 hypothetical protein; SPTR: DNA binding domain, excisionase; TIGRFAM: DNA binding domain, excisionase YP_004251647.1 KEGG: pla:Plav_1256 hypothetical protein YP_004251648.1 KEGG: phe:Phep_0726 RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family YP_004251649.1 KEGG: hpj:jhp0297 hypothetical protein; SPTR: YP_004251650.1 InterPro IPR013099; KEGG: bfs:BF0488 ion transport protein; PFAM: Ion transport 2; SPTR: uncharacterized protein; PFAM: Ion channel YP_004251651.1 COGs: COG2066 Glutaminase; HAMAP: Glutaminase, core; InterPro IPR015868; KEGG: bvu:BVU_3896 glutaminase; PFAM: Glutaminase, core; PRIAM: Glutaminase; SPTR: Glutaminase; TIGRFAM: Glutaminase, core; PFAM: Glutaminase; TIGRFAM: glutaminase A YP_004251652.1 COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: bfr:BF0539 glutamate/gamma-aminobutyrate anti-porter; PFAM: Amino acid permease domain; SPTR: Glutamate/gamma-aminobutyrate anti-porter; TIGRFAM: glutamate/gamma-aminobutyrate antiporter; PFAM: Amino acid permease; TIGRFAM: glutamate/gamma-aminobutyrate antiporter YP_004251653.1 COGs: COG1169 Isochorismate synthase; InterPro IPR015890; KEGG: pgi:PG1525 isochorismate synthase, PFAM: Chorismate binding, C-terminal; PRIAM: Isochorismate synthase; SPTR: Isochorismate synthase, ; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases YP_004251654.1 COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; HAMAP: Menaquinone biosynthesis protein MenD; InterPro IPR012001: IPR004433; KEGG: pgi:PG1524 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; PRIAM:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex ene-1-carboxylic-acidsynthase; SPTR:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexe ne-1-carboxylatesynthase; TIGRFAM: Menaquinone biosynthesis protein MenD; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase YP_004251655.1 COGs: COG0447 Dihydroxynaphthoic acid synthase; InterPro IPR001753: IPR010198; KEGG: pgi:PG1523 naphthoate synthase; PFAM: Crotonase, core; PRIAM: Naphthoate synthase; SPTR: Naphthoate synthase; TIGRFAM: Naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase) YP_004251656.1 COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: gfo:GFO_2310 O-succinylbenzoate synthase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Chloromuconate cycloisomerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase YP_004251657.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: pgi:PG1521 O-succinylbenzoic acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: O-succinylbenzoic acid--CoA ligase; PFAM: AMP-binding enzyme YP_004251658.1 InterPro IPR011701; KEGG: bth:BT_2568 sugar transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Arabinose efflux permease; PFAM: Major Facilitator Superfamily YP_004251659.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: mla:Mlab_0177 hypothetical protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily YP_004251660.1 KEGG: pdi:BDI_1448 hypothetical protein; SPTR: uncharacterized protein YP_004251661.1 COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680; KEGG: pdi:BDI_0078 Na+/H+ antiporter NhaD and related arsenite permease; PFAM: Divalent ion symporter; SPTR: Na+/H+ antiporter NhaD and related arsenite permease; PFAM: Citrate transporter YP_004251662.1 KEGG: tet:TTHERM_00713280 hypothetical protein; SPTR: uncharacterized protein YP_004251663.1 KEGG: bvu:BVU_0777 hypothetical protein; SPTR: uncharacterized protein YP_004251664.1 InterPro IPR001387; KEGG: aoe:Clos_1853 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix YP_004251665.1 COGs: COG0492 Thioredoxin reductase; InterPro IPR013027: IPR005982; KEGG: pdi:BDI_0401 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Thioredoxin-disulfide reductase; SPTR: Thioredoxin reductase; TIGRFAM: Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase YP_004251666.1 KEGG: bvu:BVU_0331 DNA mismatch repair protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF2027) YP_004251667.1 COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: pdi:BDI_3899 hypothetical protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; SPTR: uncharacterized protein; PFAM: Dinitrogenase iron-molybdenum cofactor YP_004251668.1 COGs: COG0450 Peroxiredoxin; InterPro IPR000866: IPR019479; KEGG: cts:Ctha_1656 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; PRIAM: Peroxiredoxin; SPTR: Peroxiredoxin; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family YP_004251669.1 COGs: COG2829 Outer membrane phospholipase A; InterPro IPR003187; KEGG: pdi:BDI_0074 outer membrane phospholipase A; PFAM: Phospholipase A1; SPTR: Outer membrane phospholipase A; PFAM: Phospholipase A1 YP_004251670.1 COGs: COG2987 Urocanate hydratase; InterPro IPR000193; KEGG: fba:FIC_01422 urocanate hydratase; PFAM: Urocanase; PRIAM: Urocanate hydratase; SPTR: Urocanate hydratase; TIGRFAM: Urocanase; PFAM: Urocanase; TIGRFAM: urocanate hydratase YP_004251671.1 KEGG: pph:Ppha_0375 hypothetical protein; SPTR: uncharacterized protein YP_004251672.1 InterPro IPR000620; KEGG: bth:BT_4238 permease; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: permease; PFAM: EamA-like transporter family YP_004251673.1 COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221: IPR001645; KEGG: bfs:BF2850 folylpolyglutamate synthase; PFAM: Mur ligase, central; PRIAM: Tetrahydrofolate synthase; SPTR: uncharacterized protein; TIGRFAM: Folylpolyglutamate synthetase; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_004251674.1 COGs: COG2344 AT-rich DNA-binding protein; HAMAP: Redox-sensing transcriptional repressor rex; InterPro IPR009718: IPR003781; KEGG: bfs:BF3782 redox-sensing transcriptional repressor REX; PFAM: CoA-binding; Rex DNA-binding, C-terminal; SPTR: uncharacterized protein; PFAM: CoA binding domain; DNA-binding protein N-terminus YP_004251675.1 COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR004095: IPR012947: IPR002314: IPR004154: IPR 002320; KEGG: pgn:PGN_0962 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; PRIAM: Threonine--tRNA ligase; SPTR: Threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase YP_004251676.1 COGs: COG0290 Translation initiation factor 3 (IF-3); HAMAP: Translation initiation factor IF-3; InterPro IPR019814: IPR019815: IPR001288; KEGG: pdi:BDI_0661 translation initiation factor IF-3; PFAM: Translation initiation factor 3, N-terminal; Translation initiation factor 3, C-terminal; SPTR: Translation initiation factor IF-3; TIGRFAM: Translation initiation factor 3; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3 YP_004251677.1 HAMAP: Ribosomal protein L35, non-mitochondrial; InterPro IPR021137: IPR001706; KEGG: pmz:HMPREF0659_A6572 ribosomal protein L35; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35, non-mitochondrial; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35 YP_004251678.1 COGs: COG0292 Ribosomal protein L20; HAMAP: Ribosomal protein L20; InterPro IPR005813; KEGG: bth:BT_0425 50S ribosomal protein L20; PFAM: Ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: Ribosomal protein L20; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20 YP_004251679.1 COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR000846: IPR011770; KEGG: pdi:BDI_2847 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase YP_004251680.1 InterPro IPR019759: IPR000223; KEGG: bth:BT_3319 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: uncharacterized protein; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_004251681.1 COGs: COG1875 ATPase related to phosphate starvation-inducible protein PhoH; InterPro IPR003714: IPR006596; KEGG: pdi:BDI_0770 PhoH-like protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc; SPTR: PhoH-like protein; PFAM: PhoH-like protein YP_004251682.1 KEGG: isc:IscW_ISCW011069 hypothetical protein; SPTR: uncharacterized protein YP_004251683.1 COGs: COG0693 intracellular protease/amidase; InterPro IPR002818: IPR006287; KEGG: pdi:BDI_1549 ThiJ family intracellular protease; PFAM: ThiJ/PfpI; SPTR: ThiJ family intracellular protease; TIGRFAM: DJ-1; PFAM: DJ-1/PfpI family; TIGRFAM: DJ-1 family protein YP_004251684.1 KEGG: cpi:Cpin_1100 hypothetical protein; SPTR: uncharacterized protein YP_004251685.1 KEGG: cpi:Cpin_1099 hypothetical protein; SPTR: uncharacterized protein YP_004251686.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004251687.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004251688.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004251689.1 KEGG: bld:BLi02705 hypothetical protein; SPTR: uncharacterized protein YP_004251690.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: gme:Gmet_2065 hypothetical protein; PFAM: Cysteine-rich domain; SPTR: uncharacterized protein; PFAM: Cysteine-rich domain YP_004251691.1 KEGG: mtp:Mthe_1574 heterodisulfide reductase, C subunit; SPTR: uncharacterized protein YP_004251692.1 COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterPro IPR002218; KEGG: cyc:PCC7424_1699 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Glucose-inhibited division protein A-related; SPTR: uncharacterized protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_004251693.1 COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: cyc:PCC7424_1698 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: Cysteine-rich domain; SPTR: uncharacterized protein; PFAM: Cysteine-rich domain YP_004251694.1 COGs: COG1150 Heterodisulfide reductase subunit C; KEGG: cyc:PCC7424_1697 hypothetical protein; SPTR: uncharacterized protein YP_004251695.1 COGs: COG0817 Holliday junction resolvasome endonuclease subunit; HAMAP: Crossover junction endodeoxyribonuclease RuvC; InterPro IPR002176; KEGG: bth:BT_1664 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease ruvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; manually curated; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC YP_004251696.1 KEGG: coc:Coch_1550 hypothetical protein; SPTR: uncharacterized protein YP_004251697.1 InterPro IPR001440: IPR019734; KEGG: phe:Phep_0363 tetratricopeptide TPR_3; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide TPR_3 YP_004251698.1 COGs: COG0172 Seryl-tRNA synthetase; InterPro IPR015866: IPR002314: IPR002317; KEGG: pgi:PG0316 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; PRIAM: Serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: Seryl-tRNA synthetase, class IIa; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase YP_004251699.1 COGs: COG0211 Ribosomal protein L27; HAMAP: Ribosomal protein L27; InterPro IPR001684; KEGG: dfe:Dfer_4883 ribosomal protein L27; PFAM: Ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27 YP_004251700.1 COGs: COG0261 Ribosomal protein L21; HAMAP: Ribosomal protein L21; InterPro IPR001787; KEGG: fps:FP2217 50S ribosomal protein L21; PFAM: Ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: Ribosomal protein L21; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21 YP_004251701.1 InterPro IPR014284; KEGG: plm:Plim_3811 RNA polymerase sigma factor, sigma-70 family; SPTR: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004251702.1 KEGG: cts:Ctha_2345 hypothetical protein; SPTR: ryanodine receptor YP_004251703.1 COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: cyb:CYB_2160 M48A family peptidase; PFAM: Peptidase M48; SPTR: Peptidase, M48 family; PFAM: Peptidase M48 YP_004251704.1 KEGG: ccb:Clocel_3138 oxidoreductase domain-containing protein; SPTR: uncharacterized protein YP_004251705.1 KEGG: dre:324412 family with sequence similarity 164, member A; SPTR: uncharacterized protein YP_004251706.1 KEGG: bpb:bpr_I1136 hypothetical protein; SPTR: uncharacterized protein YP_004251707.1 KEGG: fps:FP2286 hypothetical protein; SPTR: Predicted protein YP_004251708.1 COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: bvu:BVU_2284 acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Acyltransferase; PFAM: Acyltransferase YP_004251709.1 COGs: COG2173 D-alanyl-D-alanine dipeptidase; InterPro IPR000755; KEGG: bvu:BVU_1311 D-alanyl-D-alanine dipeptidase; PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; SPTR: D-alanyl-D-alanine dipeptidase; PFAM: D-ala-D-ala dipeptidase YP_004251710.1 COGs: COG0572 Uridine kinase; InterPro IPR000764; KEGG: pgn:PGN_1722 uridine kinase; PRIAM: Uridine kinase; SPTR: Uridine kinase; TIGRFAM: Uridine kinase; PFAM: Phosphoribulokinase / Uridine kinase; TIGRFAM: uridine kinase YP_004251711.1 COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: dze:Dd1591_0883 hypothetical protein; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase YP_004251712.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: bvu:BVU_1094 dipeptidyl peptidase IV; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; PRIAM: Dipeptidyl-peptidase IV; SPTR: Dipeptidyl peptidase IV; PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region YP_004251713.1 KEGG: dre:100005716 proprotein convertase subtilisin/kexin type 1; SPTR: uncharacterized protein YP_004251714.1 COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; InterPro IPR016009: IPR002649; KEGG: pdi:BDI_1235 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase YP_004251715.1 COGs: COG0539 Ribosomal protein S1; InterPro IPR003029; KEGG: bvu:BVU_2584 30S ribosomal protein S1; PFAM: Ribosomal protein S1, RNA binding domain; SPTR: uncharacterized protein; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_004251716.1 COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; HAMAP: Ribonuclease Z; InterPro IPR013471; KEGG: bfr:BF1044 ribonuclease Z; SPTR: uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z YP_004251717.1 COGs: COG4833 glycosyl hydrolase; InterPro IPR005198; KEGG: bfr:BF0331 hydrolase; PFAM: Glycoside hydrolase, family 76; SPTR: hydrolase; PFAM: Glycosyl hydrolase 76 YP_004251718.1 KEGG: bth:BT_3557 transposase; SPTR: transposase YP_004251719.1 KEGG: bvu:BVU_4011 transposase; SPTR: uncharacterized protein; PFAM: Transposase domain (DUF772) YP_004251720.1 KEGG: zpr:ZPR_3209 outer membrane protein probably involved in nutrient binding; SPTR: TonB-dependent receptor plug domain protein YP_004251721.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004251722.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004251723.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: cpi:Cpin_3048 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004251724.1 InterPro IPR012944; KEGG: cpi:Cpin_3049 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004251725.1 KEGG: yli:YALI0E26719g YALI0E26719p; SPTR: uncharacterized protein YP_004251726.1 KEGG: bvu:BVU_4011 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004251727.1 InterPro IPR000866; KEGG: zpr:ZPR_1740 AhpC/TSA family protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: AhpC/TSA family YP_004251728.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: bvu:BVU_1818 dipeptidyl peptidase IV; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; SPTR: Xaa-Pro dipeptidyl-peptidase; PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region YP_004251729.1 InterPro IPR000866; KEGG: fps:FP0274 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: Redoxin YP_004251730.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR001789: IPR003594; KEGG: bfs:BF2190 two component system histidine kinase/response regulator fusion protein; PFAM: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain YP_004251731.1 COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835; KEGG: bvu:BVU_3947 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: Mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_004251732.1 COGs: COG1881 Phospholipid-binding protein; InterPro IPR008914: IPR005247; KEGG: fps:FP1006 phospholipid-binding protein precursorybcl; PFAM: Phosphatidylethanolamine-binding protein PEBP; SPTR: uncharacterized protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein; TIGRFAM: Raf kinase inhibitor-like protein, YbhB/YbcL family YP_004251733.1 COGs: COG0035 Uracil phosphoribosyltransferase; KEGG: pdi:BDI_1151 uracil phosphoribosyltransferase; SPTR: uncharacterized protein; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase YP_004251734.1 COGs: COG0657 Esterase/lipase; KEGG: bfs:BF4363 lipase/esterase; SPTR: lipase; PFAM: alpha/beta hydrolase fold YP_004251735.1 COGs: COG1929 Glycerate kinase; InterPro IPR004381; KEGG: bvu:BVU_1607 glycerate kinase; PFAM: Glycerate kinase; PRIAM: Glycerate kinase; SPTR: uncharacterized protein; TIGRFAM: Glycerate kinase; PFAM: Glycerate kinase; TIGRFAM: glycerate kinase YP_004251736.1 KEGG: bmy:Bm1_19315 protein ZK1127.4; SPTR: Protein ZK1127.4 YP_004251737.1 COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: SecA protein; InterProIPR011115: IPR011130: IPR001650: IPR011116: IPR 004027: IPR000185; KEGG: bth:BT_4362 preprotein translocase subunit SecA; PFAM: SecA DEAD-like; SecA preprotein, cross-linking domain; DNA/RNA helicase, C-terminal; SecA Wing/Scaffold; SEC-C motif; SMART: DNA/RNA helicase, C-terminal; SPTR: Protein translocase subunit secA; TIGRFAM: SecA protein; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; Helicase conserved C-terminal domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit YP_004251738.1 COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: gfo:GFO_2743 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_004251739.1 COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: rmr:Rmar_2297 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase, zinc-binding; PRIAM: Guanine deaminase; SPTR: Cytidine/deoxycytidylate deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_004251740.1 KEGG: ptm:GSPATT00037551001 hypothetical protein; SPTR: uncharacterized protein YP_004251741.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bth:BT_3270 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004251742.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: bth:BT_3271 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004251743.1 InterPro IPR012944; KEGG: cpi:Cpin_1098 hypothetical protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004251744.1 KEGG: cpi:Cpin_1099 hypothetical protein; SPTR: uncharacterized protein YP_004251745.1 KEGG: cpi:Cpin_1100 hypothetical protein; SPTR: uncharacterized protein YP_004251746.1 InterPro IPR000866; KEGG: bvu:BVU_2223 thiol-disulfide oxidoreductase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thiol:disulfide interchange protein; PFAM: AhpC/TSA family YP_004251747.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR004010: IPR010559; KEGG: zpr:ZPR_4664 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Cache; SPTR: uncharacterized protein; PFAM: Histidine kinase YP_004251748.1 KEGG: fjo:Fjoh_4670 hypothetical protein; SPTR: uncharacterized protein YP_004251749.1 InterPro IPR012910: IPR000531; KEGG: fjo:Fjoh_4671 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent Receptor Plug Domain./TonB dependent receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004251750.1 InterPro IPR012944; KEGG: fjo:Fjoh_4672 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: Probable lipoprotein; PFAM: SusD family YP_004251751.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: zpr:ZPR_4665 LytTR family two component transcriptional regulator; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_004251752.1 InterPro IPR007419; KEGG: pgn:PGN_2077 hypothetical protein; PFAM: BFD-like [2Fe-2S]-binding domain; SPTR: Nitrite reductase-related protein; PFAM: BFD-like [2Fe-2S] binding domain YP_004251753.1 InterPro IPR000866; KEGG: bvu:BVU_2549 thiol-disulfide isomerase and thioredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: Redoxin YP_004251754.1 InterPro IPR000866; KEGG: bfs:BF3057 thiol:disulfide oxidoreductase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004251755.1 KEGG: det:DET0352 hypothetical protein; SPTR: member of asn/thr-rich large protein YP_004251756.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004251757.1 KEGG: cpi:Cpin_3290 hypothetical protein; SPTR: uncharacterized protein YP_004251758.1 InterPro IPR012944; KEGG: cpi:Cpin_3289 hypothetical protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004251759.1 InterPro IPR012910; KEGG: cpi:Cpin_3288 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004251760.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_1799 FecR protein; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004251761.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: sli:Slin_2375 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004251762.1 InterPro IPR001387; KEGG: hch:HCH_01634 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Predicted transcriptional regulator; PFAM: Helix-turn-helix YP_004251763.1 COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR005074: IPR001140; KEGG: phe:Phep_0558 ABC transporter related; PFAM: Peptidase C39, bacteriocin processing; ABC transporter, transmembrane domain; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter transmembrane region; Peptidase C39 family YP_004251764.1 InterPro IPR012910; KEGG: pdi:BDI_1105 outer membrane receptor protein involved in Fe transport; PFAM: TonB-dependent receptor, plug; SPTR: uncharacterized protein YP_004251765.1 COGs: COG1944 conserved hypothetical protein; InterPro IPR003776; KEGG: cpy:Cphy_3580 hypothetical protein; PFAM: YcaO-like; SPTR: Cytoplasmic protein; TIGRFAM: YcaO-like; PFAM: YcaO-like family; TIGRFAM: uncharacterized domain YP_004251766.1 KEGG: ptm:GSPATT00007144001 hypothetical protein; SPTR: uncharacterized protein YP_004251767.1 COGs: COG4823 Abortive infection bacteriophage resistance protein; InterPro IPR011664; KEGG: pmz:HMPREF0659_A6510 Abi-like protein; PFAM: Abortive infection bacteriophage resistance related; SPTR: abortive infection bacteriophage resistance protein; PFAM: Abi-like protein YP_004251768.1 COGs: COG4951 conserved hypothetical protein; InterPro IPR002755: IPR006935: IPR014001; KEGG: pru:PRU_1107 type III restriction-modification system subunit Res; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; DNA primase, small subunit; SMART: DEAD-like helicase, N-terminal; SPTR: DNA primase small subunit; PFAM: Type III restriction enzyme, res subunit YP_004251769.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: amu:Amuc_1957 membrane protein-like protein; PFAM: Major facilitator superfamily MFS-1; SPTR: uncharacterized protein; PFAM: Major Facilitator Superfamily YP_004251771.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: bvu:BVU_0383 ribosomal large subunit pseudouridine synthase D; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Ribosomal large subunit pseudouridine synthase D; PFAM: RNA pseudouridylate synthase YP_004251772.1 COGs: COG0413 Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: pdi:BDI_0812 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004251773.1 COGs: COG0688 Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase-related protein; InterPro IPR003817: IPR004428; KEGG: bth:BT_2231 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase proenzyme; TIGRFAM: Phosphatidylserine decarboxylase-related protein; PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein YP_004251774.1 COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: bfr:BF0773 phosphatidate cytidylyltransferase; PFAM: Phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase YP_004251775.1 KEGG: cpi:Cpin_0663 hypothetical protein; SPTR: uncharacterized protein YP_004251776.1 COGs: COG0465 ATP-dependent Zn protease; InterPro IPR003959: IPR000642: IPR003593: IPR005936; KEGG: fbc:FB2170_16406 transmembrane AAA-metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR: transmembrane AAA-metalloprotease FtsH; TIGRFAM: Peptidase M41, FtsH; PFAM: FtsH Extracellular; Peptidase M41; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_004251777.1 COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: fba:FIC_02432 iojap family protein; PFAM: Iojap-related protein; SPTR: uncharacterized protein; TIGRFAM: Iojap-related protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein YP_004251778.1 COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: dvm:DvMF_2809 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Serine--pyruvate transaminase; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V YP_004251779.1 KEGG: fjo:Fjoh_2507 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2752) YP_004251780.1 KEGG: cat:CA2559_08586 hypothetical protein; SPTR: uncharacterized protein YP_004251781.1 KEGG: gfo:GFO_2286 hypothetical protein; SPTR: uncharacterized protein YP_004251782.1 COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR002627: IPR018022; KEGG: pdi:BDI_2111 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: uncharacterized protein; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA) YP_004251783.1 SPTR: Maturase K YP_004251784.1 KEGG: bfs:BF0044 hypothetical protein; SPTR: uncharacterized protein YP_004251785.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: pjd:Pjdr2_5257 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: uncharacterized protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004251786.1 KEGG: bfr:BF3849 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3575) YP_004251787.1 KEGG: bfr:BF3848 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1812) YP_004251788.1 KEGG: bfr:BF3847 hypothetical protein; SPTR: uncharacterized protein YP_004251789.1 KEGG: bfr:BF3845 hypothetical protein; SPTR: uncharacterized protein YP_004251790.1 KEGG: bth:BT_1014 hypothetical protein; SPTR: uncharacterized protein YP_004251791.1 KEGG: bth:BT_2347 transposase; SPTR: Transposase YP_004251792.1 InterPro IPR008878; KEGG: bvu:BVU_3680 hypothetical protein; PFAM: Transposase (), IS66 Orf2 like; SPTR: uncharacterized protein; PFAM: IS66 Orf2 like protein YP_004251793.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: ere:EUBREC_0502 hypothetical protein; SPTR: uncharacterized protein YP_004251794.1 InterPro IPR000620; KEGG: rde:RD1_2671 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Translation-associated GTPase; PFAM: EamA-like transporter family YP_004251795.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: sti:Sthe_0360 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme YP_004251796.1 COGs: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain; InterPro IPR004646: IPR004647; KEGG: chu:CHU_3285 fumarase; PFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; PRIAM: Fumarate hydratase; SPTR: Fumarase; TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; PFAM: Fumarase C-terminus; Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region YP_004251797.1 COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: gfo:GFO_0779 transmembrane metalloprotease; PFAM: Peptidase M48; PRIAM: Ste24 endopeptidase; SPTR: Transmembrane metalloprotease, family M48; PFAM: Peptidase M48 YP_004251798.1 COGs: COG2188 Transcriptional regulators; InterPro IPR000524: IPR011663; KEGG: bth:BT_2103 transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain YP_004251799.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: bth:BT_2104 transcriptional repressor; PFAM: ROK; SPTR: ROK family member transcriptional repressor; PFAM: ROK family; TIGRFAM: mannose-6-phosphate isomerase, class I YP_004251800.1 InterPro IPR003594; KEGG: lme:LEUM_1809 signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SPTR: Signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004251801.1 KEGG: bfs:BF0405 hypothetical protein; SPTR: uncharacterized protein YP_004251803.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: dfe:Dfer_3565 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004251804.1 InterPro IPR010106; KEGG: wpi:WPa_0291 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP01784; TIGRFAM: conserved hypothetical protein ( transposase or invertase) YP_004251806.1 InterPro IPR005181: IPR006104; KEGG: sli:Slin_1080 protein of unknown function DUF303 acetylesterase PFAM: Protein of unknown function DUF303, acetylesterase ; Glycoside hydrolase 2, carbohydrate-binding; SPTR: Glycosyl hydrolase 2, sugar binding domain protein; PFAM: Domain of unknown function (DUF303); Glycosyl hydrolases family 2, sugar binding domain YP_004251807.1 COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR001453: IPR008136: IPR008135; KEGG: dfe:Dfer_0456 competence/damage-inducible protein CinA; PFAM: CinA, C-terminal; Molybdopterin binding; SPTR: Competence/damage-inducible protein CinA C-terminal domain; TIGRFAM: Competence-induced protein CinA; CinA, C-terminal; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain YP_004251808.1 KEGG: phe:Phep_0544 hypothetical protein; SPTR: uncharacterized protein; PFAM: alpha/beta hydrolase fold YP_004251809.1 KEGG: pgi:PG0683 ABC transporter, permease, SPTR: ABC transporter, permease YP_004251810.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: pdi:BDI_1385 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain YP_004251811.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: pdi:BDI_1637 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: ABC transporter; TIGRFAM: bacteriocin export ABC transporter, lactococcin 972 group YP_004251812.1 InterPro IPR003838; KEGG: sli:Slin_4591 protein of unknown function DUF214; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004251813.1 KEGG: dfe:Dfer_4258 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2807) YP_004251814.1 InterPro IPR001440: IPR019734; KEGG: pmf:P9303_28681 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat YP_004251815.1 KEGG: kko:Kkor_1575 orphan protein; SPTR: orphan protein; PFAM: Peptidase M49 YP_004251816.1 KEGG: bfr:BF0260 hypothetical protein; SPTR: uncharacterized protein YP_004251817.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659; KEGG: bth:BT_0587 prolyl oligopeptidase; PFAM: WD40-like Beta Propeller; SPTR: Prolyl oligopeptidase; manually curated; PFAM: Prolyl oligopeptidase; WD40-like Beta Propeller Repeat YP_004251818.1 COGs: COG0468 RecA/RadA recombinase; HAMAP: DNA recombination and repair protein RecA; InterPro IPR013765: IPR003593; KEGG: pdi:BDI_1452 recombinase A; PFAM: DNA recombination and repair protein RecA; SMART: ATPase, AAA+ type, core; SPTR: Protein recA; TIGRFAM: DNA recombination and repair protein RecA; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA YP_004251819.1 COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: phe:Phep_0880 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family YP_004251820.1 KEGG: bvu:BVU_1328 hypothetical protein; SPTR: uncharacterized protein YP_004251821.1 COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683: IPR003736; KEGG: aat:D11S_1575 esterase YdiI; PFAM: Thioesterase superfamily; SPTR: Esterase YdiI; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1 YP_004251822.1 KEGG: pdi:BDI_1218 hypothetical protein; SPTR: uncharacterized protein YP_004251823.1 KEGG: cpi:Cpin_2233 hypothetical protein; SPTR: uncharacterized protein YP_004251824.1 KEGG: bth:BT_0416 hypothetical protein; SPTR: uncharacterized protein; PFAM: Sulfotransferase domain YP_004251825.1 COGs: COG2895 GTPase - Sulfate adenylate transferase subunit 1; HAMAP: Sulfate adenylyltransferase subunit 1; InterPro IPR000795: IPR004161: IPR011779; KEGG: pdi:BDI_0796 sulfate adenylyltransferase subunit 1; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase subunit 1; TIGRFAM: Sulphate adenylyltransferase, large subunit; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein domain YP_004251826.1 COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; HAMAP: Sulfate adenylyltransferase subunit 2; InterPro IPR002500: IPR011784; KEGG: pdi:BDI_0795 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase subunit 2; TIGRFAM: Sulphate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulfate reductase; TIGRFAM: sulfate adenylyltransferase, small subunit YP_004251827.1 COGs: COG0529 Adenylylsulfate kinase and related kinase; HAMAP: Adenylylsulphate kinase, C-terminal; InterPro IPR002891; KEGG: bfs:BF1675 adenylylsulfate kinase; PFAM: Adenylylsulphate kinase, C-terminal; PRIAM: Adenylyl-sulfate kinase; SPTR: Adenylyl-sulfate kinase; TIGRFAM: Adenylylsulphate kinase, C-terminal; PFAM: Adenylylsulphate kinase; TIGRFAM: adenylylsulfate kinase (apsK) YP_004251828.1 COGs: COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; InterPro IPR000760: IPR006240; KEGG: bth:BT_0411 CysQ, sulfite synthesis pathway protein; PFAM: Inositol monophosphatase; SPTR: uncharacterized protein; TIGRFAM: 3(2),5 -bisphosphate nucleotidase, bacterial; PFAM: Inositol monophosphatase; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase, bacterial YP_004251829.1 COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR000728: IPR010918; KEGG: pdi:BDI_2525 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: uncharacterized protein; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase, single chain form YP_004251830.1 COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451; KEGG: pdi:BDI_0384 UDP-N-acetylglucosamine acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; PRIAM:Acyl-ACP--UDP-N-acetylgluc osamineO-acyltransferase; SPTR: uncharacterized protein; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase YP_004251831.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423: IPR010131; KEGG: bfs:BF0154 outer membrane lipoprotein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane protein oprM; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family YP_004251832.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036: IPR004764; KEGG: bfs:BF0155 AcrB/AcrD family RND transport protein; PFAM: Acriflavin resistance protein; SPTR: AcrB/AcrD family multidrug resistance protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004251833.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bfs:BF0156 AcrA/AcrE RND transport or HlyD secretion family protein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004251834.1 KEGG: tet:TTHERM_00035470 hypothetical protein; SPTR: Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain YP_004251835.1 COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: pdi:BDI_1057 dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: D-lactate dehydrogenase; SPTR: D-lactate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004251836.1 COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR002933: IPR011650: IPR010168; KEGG: cli:Clim_1254 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: Amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase YP_004251837.1 COGs: COG1738 conserved hypothetical protein; InterPro IPR003744; KEGG: pdi:BDI_1643 hypothetical protein; PFAM: Protein of unknown function DUF165; SPTR: uncharacterized protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein YP_004251838.1 InterPro IPR013097; KEGG: pgi:PG0652 hypothetical protein; PFAM: Stress responsive alpha-beta barrel; SPTR: uncharacterized protein; PFAM: Stress responsive A/B Barrel Domain YP_004251840.1 COGs: COG1301 Na+/H+-dicarboxylate symporter; KEGG: cbb:CLD_0540 sodium:dicarboxylate symporter family protein; SPTR: Sodium:dicarboxylate symporter family protein; PFAM: Sodium:dicarboxylate symporter family YP_004251841.1 COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: bvu:BVU_1665 fructokinase; PFAM: Carbohydrate/purine kinase; SPTR: Fructokinase; PFAM: pfkB family carbohydrate kinase YP_004251842.1 COGs: COG3590 metalloendopeptidase; InterPro IPR008753: IPR018497; KEGG: bvu:BVU_2033 endothelin-converting enzyme; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal; PRIAM: Endothelin-converting enzyme 1; SPTR: uncharacterized protein; PFAM: Peptidase M13 YP_004251843.1 COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153: IPR006016; KEGG: pdi:BDI_1699 Na+/H+ antiporter; PFAM: Cation/H+ exchanger; UspA; SPTR: Na+/H+ antiporter; PFAM: Universal stress protein family; Sodium/hydrogen exchanger family YP_004251844.1 KEGG: pdi:BDI_0446 hypothetical protein; SPTR: uncharacterized protein YP_004251845.1 KEGG: rbi:RB2501_09295 hypothetical protein; SPTR: uncharacterized protein YP_004251846.1 KEGG: ddf:DEFDS_1305 4-amino-4-deoxychorismate lyase; SPTR: uncharacterized protein; PFAM: Aminotransferase class IV YP_004251847.1 COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR015890; KEGG: hiq:CGSHiGG_09550 para-aminobenzoate synthase component I; PFAM: Chorismate binding, C-terminal; PRIAM: Aminodeoxychorismate synthase; SPTR: uncharacterized protein; PFAM: chorismate binding enzyme YP_004251848.1 COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR000991: IPR006221; KEGG: pgn:PGN_0747 probable anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal; PRIAM: Anthranilate synthase; SPTR: uncharacterized protein; TIGRFAM: Glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_004251849.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: bvu:BVU_0776 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; SPTR: DNA mismatch repair protein MutS; PFAM: MutS domain V; MutS domain III YP_004251850.1 COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: pdi:BDI_1706 transmembrane protein; PFAM: Uncharacterised protein family UPF0126; SPTR: uncharacterized protein; PFAM: UPF0126 domain YP_004251851.1 InterPro IPR013096; KEGG: cyh:Cyan8802_2566 cupin 2 conserved barrel domain protein; PFAM: Cupin 2, conserved barrel; SPTR: uncharacterized protein; PFAM: Cupin domain YP_004251852.1 COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766; KEGG: pdi:BDI_1924 thioredoxin; PFAM: Thioredoxin domain; SPTR: uncharacterized protein; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_004251853.1 COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro IPR006204: IPR004424; KEGG: dfe:Dfer_4111 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_004251854.1 KEGG: dsa:Desal_3692 hypothetical protein; SPTR: uncharacterized protein YP_004251855.1 COGs: COG3247 conserved hypothetical protein; KEGG: coc:Coch_1436 hypothetical protein; SPTR: uncharacterized protein YP_004251856.1 COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: bfr:BF0616 transport protein; PFAM: Mechanosensitive ion channel MscS; SPTR: uncharacterized protein; PFAM: Mechanosensitive ion channel YP_004251857.1 COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR005148: IPR015945: IPR008909: IPR001278; KEGG: bvu:BVU_1081 arginyl-tRNA synthetase; PFAM: DALR anticodon binding; Arginyl-tRNA synthetase, class Ic, core; Arginyl tRNA synthetase, class Ic, N-terminal; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase YP_004251858.1 COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR004013: IPR010140; KEGG: bfs:BF1597 histidinol-phosphatase; PFAM: PHP, C-terminal; SPTR: Histidinol phosphate phosphatase HisJ family protein; TIGRFAM: Histidinol phosphate phosphatase, HisJ; PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family YP_004251859.1 KEGG: vex:VEA_003212 hypothetical protein; SPTR: uncharacterized protein YP_004251860.1 KEGG: bvu:BVU_3470 hypothetical protein; SPTR: uncharacterized protein YP_004251861.1 COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase; InterPro IPR000760; KEGG: aar:Acear_1399 inositol monophosphatase; PFAM: Inositol monophosphatase; PRIAM: Inositol-phosphate phosphatase; SPTR: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase; PFAM: Inositol monophosphatase YP_004251862.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: bth:BT_4499 hypothetical protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: uncharacterized protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004251863.1 COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: bfs:BF2341 hypothetical protein; PFAM: Patatin; SPTR: uncharacterized protein; PFAM: Patatin-like phospholipase YP_004251864.1 COGs: COG0519 GMP synthase PP-ATPase domain/subunit; HAMAP: GMP synthase [glutamine-hydrolyzing]; InterPro IPR000991: IPR001674: IPR004739; KEGG: sli:Slin_2862 GMP synthase, large subunit; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: GMP synthase (glutamine-hydrolyzing); SPTR: uncharacterized protein; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; PFAM: GMP synthase C terminal domain; Glutamine amidotransferase class-I; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit YP_004251865.1 COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667: IPR003156; KEGG: zpr:ZPR_1688 phosphoesterase domain-containing protein; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Phosphoesterase domain-containing protein; PFAM: DHH family; DHHA1 domain YP_004251866.1 InterPro IPR015017; KEGG: drm:Dred_1482 hypothetical protein; PFAM: Protein of unknown function DUF1904; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1904) YP_004251867.1 InterPro IPR000835; KEGG: dsy:DSY3432 hypothetical protein; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: uncharacterized protein; PFAM: MarR family YP_004251868.1 COGs: COG2195 Di- and tripeptidase; InterPro IPR002933: IPR011650: IPR001160; KEGG: bth:BT_1615 aminoacyl-histidine dipeptidase; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Xaa-His dipeptidase; SPTR: Aminoacyl-histidine dipeptidase; TIGRFAM: Peptidase M20C, Xaa-His dipeptidase; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: aminoacyl-histidine dipeptidase YP_004251869.1 COGs: COG1956 GAF domain-containing protein; KEGG: ddi:DDB_G0271136 GAF domain-containing protein; SPTR: uncharacterized protein YP_004251870.1 InterPro IPR019734; KEGG: bfs:BF2334 hypothetical protein; SPTR: uncharacterized protein YP_004251871.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004251872.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR007630: IPR014284; KEGG: fjo:Fjoh_3804 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004251873.1 KEGG: dra:DR_B0059 transposase, SPTR: uncharacterized protein; PFAM: Transposase DDE domain YP_004251874.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bth:BT_3270 anti-sigma factor; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004251875.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_004251876.1 KEGG: cpi:Cpin_5146 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004251877.1 KEGG: cpi:Cpin_5145 hypothetical protein; SPTR: uncharacterized protein YP_004251878.1 KEGG: cpi:Cpin_5144 hypothetical protein; SPTR: Cell wall protein DAN4 YP_004251879.1 InterPro IPR000866; KEGG: cpi:Cpin_3292 redoxin domain protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: Redoxin YP_004251880.1 KEGG: fbc:FB2170_00570 hypothetical protein; SPTR: transmembrane protein YP_004251881.1 COGs: COG0101 Pseudouridylate synthase; HAMAP: Pseudouridine synthase I, TruA; InterPro IPR020097: IPR001406; KEGG: bvu:BVU_2546 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; SPTR: tRNA pseudouridine synthase A; TIGRFAM: Pseudouridine synthase I, TruA; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_004251882.1 COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: cpi:Cpin_4886 SMC domain protein; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: SMC domain protein; TIGRFAM: exonuclease SbcC YP_004251883.1 COGs: COG0420 DNA repair exonuclease; InterPro IPR004843: IPR004593; KEGG: bfr:BF3147 exonuclease; PFAM: Metallophosphoesterase; SPTR: uncharacterized protein; TIGRFAM: Exonuclease SbcD; PFAM: Calcineurin-like phosphoesterase; Type 5 capsule protein repressor C terminal; TIGRFAM: exonuclease SbcD YP_004251884.1 COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: pdi:BDI_2426 heme biosynthesis protein; PFAM: Radical SAM; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily YP_004251885.1 KEGG: pdi:BDI_2425 hypothetical protein; SPTR: uncharacterized protein YP_004251886.1 KEGG: ame:409598 similar to pawn CG11101-PA YP_004251887.1 KEGG: pdi:BDI_0408 RNA polymerase ECF-type sigma factor; SPTR: uncharacterized protein YP_004251888.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: pdi:BDI_0407 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004251889.1 COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR001608: IPR011078; KEGG: gfo:GFO_0664 alanine racemase [fragment]; PFAM: Alanine racemase, N-terminal; SPTR: uncharacterized protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family YP_004251890.1 COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR012135; KEGG: pdi:BDI_0543 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; SPTR: uncharacterized protein; PFAM: Dihydroorotate dehydrogenase YP_004251891.1 InterPro IPR002931; KEGG: rba:RB10165 polyhydroxyalkanoate depolymerase precursor; PFAM: Transglutaminase-like; SPTR: uncharacterized protein; PFAM: Transglutaminase-like superfamily YP_004251892.1 COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594: IPR007901; KEGG: mar:MAE_32660 hypothetical protein; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; SPTR: Molybdopterin biosynthesis protein; PFAM: MoeZ/MoeB domain; ThiF family YP_004251893.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR007197: IPR010722: IPR012726; KEGG: bfs:BF2562 thiamine biosynthesis protein ThiH; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; SPTR: Thiamine biosynthesis protein ThiH; TIGRFAM: Thiazole biosynthesis ThiH; PFAM: Biotin and Thiamin Synthesis associated domain; TIGRFAM: thiazole biosynthesis protein ThiH YP_004251894.1 COGs: COG2022 Uncharacterized protein of thiazole biosynthesis; HAMAP: Thiazole biosynthesis; InterPro IPR008867; KEGG: bth:BT_0651 thiazole synthase; PFAM: Thiazole biosynthesis; SPTR: Thiazole synthase; PFAM: Thiazole biosynthesis protein ThiG YP_004251895.1 COGs: COG0352 Thiamine monophosphate synthase; HAMAP: Thiamine monophosphate synthase; InterPro IPR013749: IPR003733; KEGG: pgi:PG2109 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; PRIAM: Phosphomethylpyrimidine kinase., Thiamine-phosphate diphosphorylase; SPTR: Thiamine-phosphate pyrophosphorylase; TIGRFAM: Thiamine monophosphate synthase; PFAM: Phosphomethylpyrimidine kinase; Thiamine monophosphate synthase/TENI; TIGRFAM: phosphomethylpyrimidine kinase; thiamine-phosphate pyrophosphorylase YP_004251896.1 COGs: COG0422 Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: pgi:PG2110 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC; SPTR: Phosphomethylpyrimidine synthase; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC YP_004251897.1 InterPro IPR003749: IPR010035; KEGG: zpr:ZPR_0136 thiamine biosynthesis protein; PFAM: ThiamineS; SPTR: uncharacterized protein; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS YP_004251898.1 KEGG: cjr:CJE1529 motility accessory factor; SPTR: Motility accessory factor YP_004251899.1 KEGG: bfs:BF0715 hypothetical protein; SPTR: uncharacterized protein YP_004251900.1 KEGG: bvu:BVU_0068 hypothetical protein; SPTR: uncharacterized protein YP_004251901.1 KEGG: ppr:PBPRA0358 transposase; SPTR: Transposase YP_004251902.1 InterPro IPR011701; KEGG: pdi:BDI_0984 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Transporter, major facilitator family; manually curated; PFAM: Major Facilitator Superfamily YP_004251903.1 COGs: COG0280 Phosphotransacetylase; InterPro IPR002505; KEGG: cac:CA_C3076 phosphate butyryltransferase; PFAM: Phosphate acetyl/butaryl transferase; PRIAM: Phosphate butyryltransferase; SPTR: Phosphotransacetylase; PFAM: Phosphate acetyl/butaryl transferase YP_004251904.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: pdi:BDI_1220 OmpA family outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Outer membrane protein, OmpA family; PFAM: OmpA family YP_004251905.1 COGs: COG0132 Dethiobiotin synthetase; HAMAP: Dethiobiotin synthase; InterPro IPR004472; KEGG: bfs:BF1614 dithiobiotin synthetase; PRIAM: Dethiobiotin synthase; SPTR: Dethiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: dethiobiotin synthase YP_004251906.1 COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: bth:BT_2412 collagenase; PFAM: Peptidase U32; SPTR: uncharacterized protein; PFAM: Collagenase; Peptidase U32 YP_004251907.1 COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; InterPro IPR005855: IPR000583: IPR001347; KEGG: bth:BT_0554 glucosamine--fructose-6-phosphate aminotransferase; PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: Glucosamine-fructose-6-phosphate aminotransferase; TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_004251908.1 InterPro IPR002192; KEGG: ssm:Spirs_3995 response regulator receiver protein; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; SPTR: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate binding domain YP_004251909.1 KEGG: bvu:BVU_3699 hypothetical protein; SPTR: uncharacterized protein YP_004251910.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: bvu:BVU_3700 outer membrane protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB dependent receptor; PFAM: TonB-dependent Receptor Plug Domain YP_004251911.1 KEGG: bvu:BVU_3701 hypothetical protein; SPTR: uncharacterized protein YP_004251912.1 KEGG: bvu:BVU_3785 hypothetical protein; SPTR: uncharacterized protein YP_004251913.1 COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR000644: IPR001093; KEGG: bfs:BF3343 inosine 5-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; PRIAM: IMP dehydrogenase; SPTR: inosine-5'-monophosphate dehydrogenase (GMP biosynthesis); PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase YP_004251914.1 COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR006543: IPR006549; KEGG: nis:NIS_1450 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase; SPTR: D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase; TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase domain; histidinol-phosphatase YP_004251915.1 COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR005790: IPR010372; KEGG: chu:CHU_1537 hypothetical protein; PFAM: DNA polymerase III, delta; SPTR: uncharacterized protein; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit YP_004251916.1 KEGG: cpi:Cpin_3081 hypothetical protein; SPTR: uncharacterized protein YP_004251917.1 COGs: COG1678 transcriptional regulator protein; HAMAP: Protein of unknown function DUF179; InterPro IPR003774; KEGG: zpr:ZPR_2523 hypothetical protein; PFAM: Protein of unknown function DUF179; SPTR: transcriptional regulator; PFAM: Uncharacterized ACR, COG1678 YP_004251918.1 COGs: COG1760 L-serine deaminase; InterPro IPR005131: IPR005130; KEGG: pdi:BDI_1340 L-serine dehydratase, iron-sulfur-dependent, single chain form; PFAM: Serine dehydratase-like, alpha subunit; Serine dehydratase beta chain; PRIAM: L-serine ammonia-lyase; SPTR: uncharacterized protein; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form YP_004251919.1 COGs: COG1259 conserved hypothetical protein; InterPro IPR003729: IPR001943; KEGG: zpr:ZPR_3661 hypothetical protein; PFAM: Protein of unknown function DUF151; UvrB/UvrC protein; SPTR: uncharacterized protein; PFAM: Uncharacterised ACR, COG1259; UvrB/uvrC motif YP_004251920.1 COGs: COG0166 Glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); InterPro IPR001672; KEGG: pdi:BDI_0148 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI); PRIAM: Glucose-6-phosphate isomerase; SPTR: Glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase YP_004251921.1 COGs: COG0205 6-phosphofructokinase; InterPro IPR000023; KEGG: tai:Taci_1743 6-phosphofructokinase; PFAM: Phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; PFAM: Phosphofructokinase YP_004251922.1 COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154: IPR013149; KEGG: pdi:BDI_2170 zinc-type alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; SPTR: Alcohol dehydrogenase, zinc-containing; PFAM: Alcohol dehydrogenase GroES-like domain YP_004251923.1 KEGG: bvu:BVU_2793 hypothetical protein; SPTR: uncharacterized protein YP_004251924.1 KEGG: bth:BT_2758 hypothetical protein; SPTR: uncharacterized protein YP_004251925.1 COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR004550: IPR006034; KEGG: bth:BT_2757 L-asparaginase II; PFAM: Asparaginase/glutaminase; PRIAM: Asparaginase; SPTR: uncharacterized protein; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase; TIGRFAM: L-asparaginases, type II YP_004251926.1 COGs: COG2704 Anaerobic C4-dicarboxylate transporter; InterPro IPR004668; KEGG: bth:BT_2756 anaerobic C4-dicarboxylate transporter; PFAM: Anaerobic c4-dicarboxylate membrane transporter; SPTR: Anaerobic C4-dicarboxylate transporter dcuB; TIGRFAM: Anaerobic c4-dicarboxylate membrane transporter; PFAM: Anaerobic c4-dicarboxylate membrane transporter; TIGRFAM: anaerobic c4-dicarboxylate membrane transporter family protein YP_004251927.1 KEGG: tet:TTHERM_00361830 IPT/TIG domain containing protein; SPTR: Fibronectin type III domain protein YP_004251928.1 COGs: COG0282 Acetate kinase; HAMAP: Acetate kinase; InterPro IPR004372: IPR000890; KEGG: afn:Acfer_1400 acetate kinase; PFAM: Acetate/butyrate kinase; PRIAM: Acetate kinase; SPTR: uncharacterized protein; TIGRFAM: Acetate kinase; PFAM: Acetokinase; TIGRFAM: acetate kinase YP_004251929.1 COGs: COG0280 Phosphotransacetylase; InterPro IPR004614: IPR002505; KEGG: pdi:BDI_3369 phosphotransacetylase/phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; PRIAM: Phosphate acetyltransferase; SPTR: Phosphotransacetylase/phosphate acetyltransferase; TIGRFAM: Phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase YP_004251930.1 KEGG: sru:SRU_0469 hypothetical protein; SPTR: uncharacterized protein YP_004251931.1 COGs: COG2872 metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain; InterPro IPR012947; KEGG: pdi:BDI_0673 alanyl-tRNA synthetase; PFAM: Threonyl/alanyl tRNA synthetase, SAD; SPTR: uncharacterized protein; PFAM: Threonyl and Alanyl tRNA synthetase second additional domain YP_004251932.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR011284: IPR002198; KEGG: bfs:BF3932 3-oxoacyl-[acyl-carrier protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-ACP reductase; TIGRFAM: 3-oxoacyl-ACP reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-ACP reductase YP_004251933.1 KEGG: phe:Phep_0697 hypothetical protein; SPTR: uncharacterized protein YP_004251934.1 KEGG: bvu:BVU_2569 hypothetical protein; SPTR: uncharacterized protein YP_004251935.1 COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: pdi:BDI_2571 ATP-dependent helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase domain protein; PFAM: UvrD/REP helicase YP_004251936.1 COGs: COG5421 Transposase; InterPro IPR002559; KEGG: cph:Cpha266_0325 transposase, IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family; PFAM: Transposase DDE domain YP_004251937.1 KEGG: cpi:Cpin_4994 beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase YP_004251938.1 InterPro IPR012910; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004251939.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004251940.1 KEGG: tva:TVAG_594140 hypothetical protein; SPTR: toxin-antitoxin system, antitoxin component, AbrB famil YP_004251941.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004251942.1 KEGG: zpr:ZPR_0678 hypothetical protein; SPTR: uncharacterized protein YP_004251943.1 KEGG: cpi:Cpin_6153 hypothetical protein; SPTR: uncharacterized protein YP_004251944.1 KEGG: bfr:BF0695 hypothetical protein; SPTR: uncharacterized protein YP_004251945.1 KEGG: rno:688413 late cornified envelope 1M; SPTR: uncharacterized protein YP_004251946.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004251947.1 COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504; KEGG: bth:BT_1887 RNA-binding protein RbpA; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNA-binding protein rbpA; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YP_004251948.1 COGs: COG3022 conserved hypothetical protein; HAMAP: UPF0246 protein yaaA; InterPro IPR005583; KEGG: bfs:BF3795 hypothetical protein; PFAM: Protein of unknown function DUF328; SPTR: UPF0246 protein; PFAM: Protein of unknown function (DUF328) YP_004251949.1 COGs: COG3426 Butyrate kinase; HAMAP: butyrate kinase; InterPro IPR011245: IPR000890; KEGG: cdl:CDR20291_0112 butyrate kinase; PFAM: Acetate/butyrate kinase; PRIAM: Butyrate kinase; SPTR: Butyrate kinase; TIGRFAM: Butyrate kinase; PFAM: Acetokinase; TIGRFAM: butyrate kinase YP_004251950.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: rba:RB2098 D-aminoacylase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; PFAM: Beta-lactamase YP_004251951.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: clj:CLJU_c09370 branched-chain-amino-acid aminotransferase; PFAM: Aminotransferase, class IV; SPTR: Branched-chain-amino-acid aminotransferase; PFAM: Aminotransferase class IV YP_004251952.1 KEGG: tva:TVAG_365640 Dynein heavy chain family protein; SPTR: Terminase large subunit YP_004251953.1 COGs: COG5495 conserved hypothetical protein; InterPro IPR018931; KEGG: bfs:BF3122 hypothetical protein; PFAM: Domain of unknown function DUF2520; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF2520); NADP oxidoreductase coenzyme F420-dependent YP_004251954.1 COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023; KEGG: gfo:GFO_1811 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; SPTR: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; TIGRFAM: Phosphatase KdsC; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA YP_004251955.1 InterPro IPR000537; KEGG: gfo:GFO_1812 prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA family prenyltransferase; PFAM: UbiA prenyltransferase YP_004251956.1 COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; HAMAP: Maf-like protein; InterPro IPR003697; KEGG: bth:BT_1676 Maf-like protein; PFAM: Maf-like protein; SPTR: Maf-like protein BACFIN_08362; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; TIGRFAM: MAF protein YP_004251957.1 InterPro IPR019500; KEGG: fps:FP0382 hypothetical protein; PFAM: Peptidase S46; SPTR: uncharacterized protein; PFAM: Peptidase S46 YP_004251958.1 COGs: COG0605 Superoxide dismutase; InterPro IPR019831: IPR019832; KEGG: nwa:Nwat_0709 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; SPTR: Superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain YP_004251959.1 KEGG: fbc:FB2170_02555 hypothetical protein; SPTR: D-alanine--D-alanine ligase YP_004251960.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: pmz:HMPREF0659_A5196 TonB-dependent receptor plug domain protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004251961.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: bth:BT_0215 iron uptake regulatory protein; PFAM: Ferric-uptake regulator; SPTR: Transcriptional regulator, Fur family; PFAM: Ferric uptake regulator family YP_004251962.1 COGs: COG1592 Rubrerythrin; InterPro IPR004039: IPR003251; KEGG: pdi:BDI_1479 rubrerythrin; PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; SPTR: rubrerythrin; PFAM: Rubrerythrin YP_004251963.1 COGs: COG0588 Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; InterPro IPR005952: IPR013078; KEGG: pdi:BDI_0596 phosphoglyceromutase; PFAM: Histidine phosphatase superfamily, clade-1; PRIAM: Bisphosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TIGRFAM: Phosphoglycerate mutase 1; PFAM: Phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase, BPG-dependent, family 1 YP_004251964.1 COGs: COG1830 DhnA-type fructose-1 6-bisphosphate aldolase; InterPro IPR002915; KEGG: bfs:BF3090 fructose-bisphosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; SPTR: uncharacterized protein; PFAM: DeoC/LacD family aldolase YP_004251965.1 COGs: COG0313 methyltransferase; InterPro IPR000878; KEGG: fps:FP1210 methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: Probable methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family YP_004251966.1 COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: phe:Phep_3063 beta-lactamase domain protein; SPTR: Phosphonate metabolism protein PhnP; PFAM: Metallo-beta-lactamase superfamily YP_004251967.1 COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR005743: IPR002205: IPR006691; KEGG: pdi:BDI_1090 DNA gyrase A subunit; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: uncharacterized protein; TIGRFAM: DNA gyrase, subunit A; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit YP_004251968.1 InterPro IPR019734: IPR001440; KEGG: pgi:PG1385 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR domain protein; PFAM: Tetratricopeptide repeat YP_004251969.1 COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: sli:Slin_1686 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SPTR: uncharacterized protein; PFAM: short chain dehydrogenase YP_004251970.1 KEGG: pgi:PG1786 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3078) YP_004251971.1 KEGG: chu:CHU_0571 hypothetical protein; SPTR: uncharacterized protein YP_004251972.1 COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: aas:Aasi_1094 hypothetical protein; PFAM: Uncharacterised protein family YceG-like; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family YceG-like; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family YP_004251973.1 COGs: COG0360 Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; InterPro IPR020814: IPR000529; KEGG: bfs:BF3632 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6 YP_004251974.1 COGs: COG0238 Ribosomal protein S18; HAMAP: Ribosomal protein S18; InterPro IPR001648; KEGG: bvu:BVU_0012 30S ribosomal protein S18; PFAM: Ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: Ribosomal protein S18; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18 YP_004251975.1 COGs: COG0359 Ribosomal protein L9; HAMAP: Ribosomal protein L9, bacteria/chloroplast; InterPro IPR020594: IPR020070: IPR020069; KEGG: pdi:BDI_3969 50S ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal; SPTR: 50S ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9 YP_004251976.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602: IPR003439; KEGG: bth:BT_1739 excinuclease ABC subunit A; PFAM: ABC transporter-like; SPTR: uncharacterized protein; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_004251977.1 COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR008333: IPR001433: IPR019480; KEGG: bth:BT_0891 dihydroorotate dehydrogenase electron transfer subunit; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR: Dihydroorotate dehydrogenase, electron transfer subunit; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain YP_004251978.1 COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR005720: IPR012135; KEGG: bvu:BVU_3309 dihydroorotate dehydrogenase 1B; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; PRIAM: Dihydroorotate oxidase; SPTR: uncharacterized protein; TIGRFAM: Dihydroorotate dehydrogenase, class 1, core; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein YP_004251979.1 InterPro IPR001387; KEGG: zpr:ZPR_2721 HTH_3 family transcriptional regulator protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; PFAM: Helix-turn-helix YP_004251980.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587: IPR000994; KEGG: pdi:BDI_2283 aminopeptidase; PFAM: Peptidase M24, structural domain; Creatinase; SPTR: uncharacterized protein; PFAM: Metallopeptidase M24; Creatinase/Prolidase N-terminal domain YP_004251981.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: zpr:ZPR_0082 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004251982.1 KEGG: cat:CA2559_03495 hypothetical protein; SPTR: uncharacterized protein YP_004251983.1 KEGG: ccv:CCV52592_1845 WbnF; SPTR: WbnF YP_004251984.1 KEGG: fps:FP2365 hypothetical protein; SPTR: uncharacterized protein YP_004251985.1 COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); HAMAP: Bifunctional purine biosynthesis protein purH; InterPro IPR002695: IPR013982: IPR011607; KEGG: cth:Cthe_1246 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; MGS-like; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; SPTR: Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: AICARFT/IMPCHase bienzyme; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_004251986.1 COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: pdi:BDI_1884 rod shape-determining protein MreB; PFAM: Cell shape determining protein MreB/Mrl; SPTR: rod shape-determining protein; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family YP_004251987.1 COGs: COG1792 Cell shape-determining protein; InterPro IPR005223: IPR007221; KEGG: bfs:BF3915 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: uncharacterized protein; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC YP_004251988.1 KEGG: cpi:Cpin_0192 rod shape-determining protein MreD; SPTR: Rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD YP_004251989.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR017790: IPR005311: IPR001460; KEGG: pdi:BDI_1881 penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: penicillin-binding protein; TIGRFAM: Penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2 YP_004251990.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR011923: IPR001182; KEGG: chu:CHU_3304 rod shape-determining protein; PFAM: Cell cycle protein; SPTR: cell division membrane protein; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA YP_004251991.1 COGs: COG1228 Imidazolonepropionase and related amidohydrolase; HAMAP: Imidazolonepropionase; InterPro IPR005920: IPR006680; KEGG: pmz:HMPREF0659_A6720 imidazolonepropionase; PFAM: Amidohydrolase 1; PRIAM: Imidazolonepropionase; SPTR: Imidazolonepropionase; TIGRFAM: Imidazolonepropionase; PFAM: Amidohydrolase; TIGRFAM: imidazolonepropionase YP_004251992.1 COGs: COG3643 Glutamate formiminotransferase; InterPro IPR004227: IPR012886: IPR013802: IPR007044; KEGG: pmz:HMPREF0659_A6723 glutamate formimidoyltransferase; PFAM: Formiminotransferase, N-terminal; Formiminotransferase, C-terminal; Cyclodeaminase/cyclohydrolase; PRIAM: Glutamate formimidoyltransferase; SPTR: uncharacterized protein; TIGRFAM: Formiminotransferase; PFAM: Formiminotransferase domain, N-terminal subdomain; Formiminotransferase-cyclodeaminase; Formiminotransferase domain; TIGRFAM: glutamate formiminotransferase YP_004251993.1 COGs: COG0474 Cation transport ATPase; InterProIPR006408: IPR001757: IPR004014: IPR008250: IPR 005834: IPR006068; KEGG: pdi:BDI_2198 transmembrane calcium-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; PRIAM: Calcium-transporting ATPase; SPTR: transmembrane calcium-transporting ATPase; TIGRFAM: ATPase, P-type, calcium-transporting, PMCA-type; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; Cation transporter/ATPase, N-terminus; haloacid dehalogenase-like hydrolase; TIGRFAM: plasma-membrane calcium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004251994.1 KEGG: dfe:Dfer_5246 DNA polymerase beta domain protein region; SPTR: uncharacterized protein YP_004251995.1 InterPro IPR000086; KEGG: sli:Slin_1022 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004251996.1 InterPro IPR011814: IPR013216; KEGG: bfs:BF1615 biotin synthesis-related fusion protein; PFAM: Methyltransferase type 11; SPTR: biotin synthesis protein BioC; TIGRFAM: Biotin biosynthesis protein BioC; PFAM: Methyltransferase domain; TIGRFAM: biotin biosynthesis protein BioC YP_004251997.1 COGs: COG2830 conserved hypothetical protein; InterPro IPR007398; KEGG: bvu:BVU_2781 biotin synthesis protein BioC; PFAM: Protein of unknown function DUF452; SPTR: biotin synthesis protein BioC; PFAM: Protein of unknown function (DUF452) YP_004251998.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: bth:BT_1443 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: uncharacterized protein; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase YP_004251999.1 COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005815: IPR005814; KEGG: pdi:BDI_1914 adenosylmethionine--8-amino-7-oxononanoate transaminase; PFAM: Aminotransferase class-III; PRIAM: Adenosylmethionine--8-amino-7-oxononanoate transaminase; SPTR: uncharacterized protein; TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase YP_004252000.1 COGs: COG0502 Biotin synthase; HAMAP: Biotin synthase; InterPro IPR006638: IPR007197: IPR010722; KEGG: bfs:BF1617 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase YP_004252001.1 KEGG: bfr:BF1604 hypothetical protein; SPTR: uncharacterized protein YP_004252002.1 COGs: COG0603 PP-loop superfamily ATPase; InterPro IPR004479: IPR018317; KEGG: aar:Acear_1411 PreQ(0) biosynthesis protein QueC; PFAM: Queuosine synthesis-like; SPTR: ExsB protein; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: ExsB; TIGRFAM: exsB protein YP_004252003.1 COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; KEGG: nis:NIS_1580 6-pyruvoyl-tetrahydropterin synthase; SPTR: 6-pyruvoyl-tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase YP_004252004.1 COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: sus:Acid_0302 radical SAM domain-containing protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily YP_004252005.1 COGs: COG0514 Superfamily II DNA helicase; InterPro IPR018329: IPR014001: IPR001650: IPR011545; KEGG: bfs:BF3706 DEAD box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase recQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family YP_004252006.1 KEGG: bth:BT_3847 hypothetical protein; SPTR: uncharacterized protein YP_004252007.1 InterPro IPR015391: IPR000297; KEGG: pdi:BDI_2390 peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain YP_004252008.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: cat:CA2559_00950 methanol dehydrogenase regulator-like protein; PFAM: ATPase, AAA-3; SPTR: Methanol dehydrogenase regulator-like protein; PFAM: ATPase associated with various cellular activities (AAA) YP_004252009.1 InterPro IPR005653; KEGG: pdi:BDI_2389 hypothetical protein; PFAM: Organic solvent tolerance-like, N-terminal; SPTR: uncharacterized protein; PFAM: OstA-like protein YP_004252010.1 KEGG: fps:FP1310 hypothetical protein; SPTR: outer membrane protein YP_004252011.1 KEGG: tva:TVAG_410100 viral A-type inclusion protein; SPTR: Viral A-type inclusion protein YP_004252012.1 KEGG: pgn:PGN_1875 hypothetical protein; SPTR: uncharacterized protein YP_004252013.1 KEGG: bth:BT_3321 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2851) YP_004252014.1 KEGG: bvu:BVU_0257 hypothetical protein; SPTR: uncharacterized protein YP_004252015.1 COGs: COG2759 Formyltetrahydrofolate synthetase; HAMAP: Formate-tetrahydrofolate ligase, FTHFS; InterPro IPR000559; KEGG: dba:Dbac_3185 formate--tetrahydrofolate ligase; PFAM: Formate-tetrahydrofolate ligase, FTHFS; PRIAM: Formate--tetrahydrofolate ligase; SPTR: Formate--tetrahydrofolate ligase; PFAM: Formate--tetrahydrofolate ligase YP_004252016.1 COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: bvu:BVU_2256 calcineurin-like phosphoesterase domain-containing protein; PFAM: Metallophosphoesterase; SPTR: Phosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004252017.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004252018.1 COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932: IPR004010: IPR003660: IPR010822; KEGG: pru:PRU_2848 cache/HAMP/SpoIIE domain-containing protein; PFAM: Sporulation stage II, protein E C-terminal; HAMP linker domain; Cache; SMART: Protein phosphatase 2C-related; SPTR: uncharacterized protein; PFAM: Cache domain; HAMP domain; Stage II sporulation protein E (SpoIIE) YP_004252019.1 COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: dfe:Dfer_0445 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; PFAM: Sulfatase YP_004252020.1 KEGG: phe:Phep_0648 hypothetical protein; SPTR: uncharacterized protein YP_004252021.1 COGs: COG0305 Replicative DNA helicase; InterPro IPR007692: IPR007693: IPR007694; KEGG: pdi:BDI_0669 DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; SPTR: Replicative DNA helicase DnaB; TIGRFAM: DNA helicase, DnaB type; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_004252022.1 COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055: IPR013520; KEGG: pph:Ppha_1670 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: Exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease YP_004252023.1 COGs: COG0623 Enoyl-ACP; KEGG: bvu:BVU_1986 enoyl-ACP reductase; PRIAM: Enoyl-ACP reductase (NADH); SPTR: uncharacterized protein YP_004252024.1 COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604: IPR003395; KEGG: pdi:BDI_0699 DNA repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA repair protein recN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN YP_004252025.1 KEGG: pdi:BDI_0698 hypothetical protein; SPTR: uncharacterized protein YP_004252026.1 COGs: COG0781 Transcription termination factor; InterPro IPR006027; KEGG: bvu:BVU_3821 N utilization substance protein; PFAM: NusB/RsmB/TIM44; SPTR: uncharacterized protein; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB YP_004252027.1 COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: aba:Acid345_4700 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 2 YP_004252028.1 COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR011557: IPR003594: IPR001241: IPR013506: IPR 006171: IPR002288; KEGG: pgn:PGN_0413 DNA gyrase B subunit; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, subunit B; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit YP_004252030.1 COGs: COG3808 Inorganic pyrophosphatase; HAMAP: Pyrophosphate-energized proton pump; InterPro IPR004131; KEGG: pdi:BDI_3772 membrane-bound proton-translocating pyrophosphatase; PFAM: Inorganic H+ pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: Vacuolar-type H(+)-translocating pyrophosphatase; TIGRFAM: Inorganic H+ pyrophosphatase; PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase YP_004252031.1 COGs: COG3187 Heat shock protein; InterPro IPR005184; KEGG: bth:BT_2369 hypothetical protein; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR: uncharacterized protein; PFAM: META domain YP_004252032.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; InterProIPR005840: IPR005839: IPR006638: IPR013848: IPR 007197; KEGG: pgn:PGN_0263 Fe-S oxidoreductase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Ribosomal protein S12 methylthiotransferase rimO; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family YP_004252033.1 COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638: IPR013704; KEGG: bvu:BVU_2280 hypothetical protein; PFAM: Radical SAM N-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily; Radical SAM N-terminal YP_004252034.1 InterPro IPR019734: IPR001440; KEGG: bhy:BHWA1_01643 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR domain-containing protein; PFAM: Tetratricopeptide repeat YP_004252035.1 InterPro IPR000866; KEGG: cpi:Cpin_0863 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family YP_004252036.1 InterPro IPR003032; KEGG: bth:BT_2247 ryanodine receptor; PFAM: Ryanodine receptor Ryr; SPTR: uncharacterized protein; PFAM: RyR domain YP_004252037.1 COGs: COG2184 Protein involved in cell division; InterPro IPR003812; KEGG: bfs:BF0751 FIC family protein; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: FIC family protein; PFAM: Fic/DOC family YP_004252038.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659: IPR006665; KEGG: pdi:BDI_3758 outer membrane protein OmpA family protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: Outer membrane protein OmpA family protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family YP_004252039.1 COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886: IPR007698; KEGG: zpr:ZPR_2358 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: Alanine dehydrogenase; SPTR: Alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase YP_004252040.1 COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: pdi:BDI_3343 ATPase/GTPase; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR: ATPase/GTPase; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family YP_004252041.1 InterPro IPR019734; KEGG: pdi:BDI_3149 TPR domain-containing protein; SPTR: TPR domain-containing protein YP_004252042.1 COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR002744: IPR019591; KEGG: bvu:BVU_0266 Mrp/Nbp35 family ATP-binding protein; PFAM: ATPase-like, ParA/MinD; Protein of unknown function DUF59; SPTR: Mrp/Nbp35 family ATP-binding protein; PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; Anion-transporting ATPase YP_004252043.1 COGs: COG1451 metal-dependent hydrolase; InterPro IPR002725; KEGG: dhd:Dhaf_0373 protein of unknown function DUF45; PFAM: Protein of unknown function DUF45; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF45 YP_004252044.1 KEGG: bfo:BRAFLDRAFT_82587 hypothetical protein; SPTR: uncharacterized protein YP_004252045.1 COGs: COG0159 Tryptophan synthase alpha chain; HAMAP: Tryptophan synthase, alpha chain; InterPro IPR002028; KEGG: bfs:BF2678 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit YP_004252046.1 COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: bfr:BF2655 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase YP_004252047.1 COGs: COG0338 Site-specific DNA methylase; InterPro IPR012327; KEGG: pdi:BDI_0862 methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: Methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_004252048.1 KEGG: aga:AgaP_AGAP000244 AGAP000244-PA; SPTR: Predicted protein YP_004252049.1 KEGG: drm:Dred_1227 RNA-directed DNA polymerase (reverse transcriptase); SPTR: Retron-type reverse transcriptase; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase) YP_004252050.1 KEGG: pdi:BDI_0898 hypothetical protein; SPTR: uncharacterized protein YP_004252051.1 KEGG: pdi:BDI_0897 hypothetical protein; SPTR: uncharacterized protein YP_004252052.1 KEGG: ske:Sked_21830 ATPase component of ABC transporters with duplicated ATPase domain; SPTR: uncharacterized protein YP_004252053.1 KEGG: pdi:BDI_0901 hypothetical protein; SPTR: uncharacterized protein YP_004252054.1 KEGG: psl:Psta_4346 flagellar hook-length control protein; SPTR: uncharacterized protein YP_004252055.1 InterPro IPR008170; KEGG: gfo:GFO_2426 phage tail tape measure protein; PFAM: PhoU; SPTR: uncharacterized protein YP_004252056.1 KEGG: bgf:BC1003_3407 copper resistance D domain-containing protein; SPTR: uncharacterized protein YP_004252057.1 KEGG: sdy:SDY_0422 hypothetical protein; SPTR: uncharacterized protein YP_004252058.1 KEGG: tva:TVAG_014280 hypothetical protein; SPTR: uncharacterized protein YP_004252059.1 InterPro IPR002502; KEGG: azc:AZC_3601 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SPTR: Lysozyme; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004252060.1 KEGG: gva:HMPREF0424_0987 hypothetical protein; SPTR: uncharacterized protein; PFAM: P22 coat protein - gene protein 5 YP_004252061.1 KEGG: bfs:BF2319 hypothetical protein; SPTR: uncharacterized protein; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family YP_004252062.1 KEGG: rde:RD1_3614 glycerone kinase, SPTR: uncharacterized protein; PFAM: Helix-turn-helix YP_004252063.1 KEGG: gem:GM21_3672 hypothetical protein; SPTR: uncharacterized protein YP_004252064.1 KEGG: gob:Gobs_3472 tetratricopeptide TPR_4; SPTR: Predicted protein; PFAM: Protein of unknown function (DUF1320) YP_004252065.1 COGs: COG4383 Mu-like prophage protein gp29; InterPro IPR006528: IPR009279; KEGG: dal:Dalk_3556 phage head morphogenesis protein, SPP1 gp7 family; PFAM: Phage head morphogenesis protein, SPP1 gp7; Protein of unknown function DUF935; SPTR: Predicted protein; TIGRFAM: Phage head morphogenesis protein, SPP1 gp7; PFAM: Protein of unknown function (DUF935); Phage Mu protein F like protein; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family YP_004252066.1 KEGG: vco:VC0395_A0752 phage virion morphogenesis protein; SPTR: Predicted protein; PFAM: Phage virion morphogenesis family YP_004252067.1 KEGG: cpi:Cpin_0280 hypothetical protein; SPTR: Predicted protein YP_004252068.1 KEGG: cpi:Cpin_0278 hypothetical protein; SPTR: Predicted protein YP_004252069.1 KEGG: bad:BAD_0827 chaperone protein DnaJ; SPTR: Chaperone protein DnaJ YP_004252070.1 KEGG: mmz:MmarC7_0282 hypothetical protein; SPTR: RNA-directed DNA polymerase (Reverse transcriptase) YP_004252071.1 KEGG: fjo:Fjoh_2073 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3164) YP_004252072.1 KEGG: tps:THAPSDRAFT_32983 hypothetical protein; SPTR: uncharacterized protein YP_004252073.1 KEGG: llm:llmg_0004 ATP-dependent nuclease subunit A; SPTR: ATP-dependent helicase/nuclease subunit A YP_004252075.1 KEGG: bfs:BF1471 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2786) YP_004252076.1 KEGG: tet:TTHERM_00037680 hypothetical protein; SPTR: uncharacterized protein YP_004252077.1 KEGG: chu:CHU_1465 ATP-dependent serine protease; SPTR: uncharacterized protein YP_004252078.1 KEGG: pop:POPTR_1115211 hypothetical protein; SPTR: uncharacterized protein YP_004252079.1 KEGG: bvu:BVU_0933 hypothetical protein; SPTR: uncharacterized protein YP_004252080.1 KEGG: hdu:HD0095 Mu phage DNA transposition protein B; SPTR: uncharacterized protein YP_004252081.1 KEGG: pha:PSHAa1523 hypothetical protein; SPTR: uncharacterized protein; PFAM: Integrase core domain YP_004252082.1 KEGG: pic:PICST_89789 hypothetical protein; SPTR: uncharacterized protein YP_004252083.1 KEGG: sua:Saut_1948 ModE family transcriptional regulator; SPTR: uncharacterized protein YP_004252084.1 KEGG: ptm:GSPATT00003390001 hypothetical protein; SPTR: uncharacterized protein YP_004252085.1 KEGG: pdi:BDI_0844 hypothetical protein; SPTR: Predicted protein YP_004252086.1 COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798; KEGG: bfs:BF2676 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: uncharacterized protein; PFAM: Indole-3-glycerol phosphate synthase YP_004252087.1 COGs: COG0547 Anthranilate phosphoribosyltransferase; HAMAP: Anthranilate phosphoribosyl transferase; InterPro IPR005940: IPR017459: IPR000312; KEGG: pdi:BDI_0589 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: Anthranilate phosphoribosyl transferase; PFAM: Glycosyl transferase, a/b domain; Glycosyl transferase, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase YP_004252088.1 COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR006221: IPR000991; KEGG: bth:BT_0531 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase component II; TIGRFAM: Glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_004252089.1 COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR006805: IPR015890; KEGG: aps:CFPG_020 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase component I; PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme YP_004252090.1 COGs: COG0133 Tryptophan synthase beta chain; HAMAP: Tryptophan synthase beta chain; InterPro IPR006654: IPR001926; KEGG: pdi:BDI_0592 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: Tryptophan synthase, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit YP_004252092.1 COGs: COG0082 Chorismate synthase; InterPro IPR000453; KEGG: rbi:RB2501_14629 chorismate synthase; PFAM: Chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: Chorismate synthase; manually curated; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase YP_004252093.1 COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: bfs:BF3558 isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_004252094.1 COGs: COG0029 Aspartate oxidase; InterPro IPR005288: IPR003953: IPR004112; KEGG: pgn:PGN_0535 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: L-aspartate oxidase; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase YP_004252095.1 COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR004393: IPR002638; KEGG: pgn:PGN_0534 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: nicotinate-nucleotide pyrophosphorylase; TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase YP_004252096.1 KEGG: pdi:BDI_2197 hypothetical protein; SPTR: uncharacterized protein YP_004252097.1 COGs: COG0379 Quinolinate synthase; InterPro IPR003473; KEGG: pgn:PGN_0533 quinolinate synthetase; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthetase complex, subunit A; TIGRFAM: Quinolinate synthetase A; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit YP_004252098.1 COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterProIPR004532: IPR002547: IPR005146: IPR005147: IPR 005121; KEGG: bvu:BVU_3468 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding domain; tRNA synthetase, B5; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SPTR: uncharacterized protein; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial YP_004252099.1 InterPro IPR002931; KEGG: bth:BT_2374 hypothetical protein; PFAM: Transglutaminase-like; SPTR: uncharacterized protein; PFAM: Transglutaminase-like superfamily YP_004252100.1 KEGG: bfs:BF4155 exported protein, ATP/GTP-binding; SPTR: uncharacterized protein YP_004252101.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: bfs:BF2171 transport-related membrane protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter transmembrane region; ABC transporter YP_004252102.1 COGs: COG3315 O-Methyltransferase involved in polyketide biosynthesis; KEGG: bfs:BF2170 polyketide synthesis O-methyltransferase; SPTR: uncharacterized protein; PFAM: Leucine carboxyl methyltransferase YP_004252103.1 InterPro IPR001647; KEGG: bfs:BF2169 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: TetR/AcrR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_004252104.1 KEGG: pgn:PGN_1350 hypothetical protein; SPTR: uncharacterized protein YP_004252105.1 InterPro IPR001647; KEGG: pmz:HMPREF0659_A6160 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_004252106.1 COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: pdi:BDI_2890 Na+-dependent transporter; PFAM: Sodium:neurotransmitter symporter; SPTR: Transporter; PFAM: Sodium:neurotransmitter symporter family YP_004252107.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602: IPR003439; KEGG: bvu:BVU_3046 excinuclease ABC subunit A; PFAM: ABC transporter-like; SPTR: Excinuclease ABC subunit A; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_004252108.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003018: IPR003661: IPR003594; KEGG: bth:BT_1264 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain; PAS fold YP_004252109.1 InterPro IPR000326; KEGG: bfs:BF3253 hypothetical protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: membrane-associated phospholipid phosphatase; PFAM: PAP2 superfamily YP_004252110.1 COGs: COG0320 Lipoate synthase; HAMAP: Lipoate synthase; InterPro IPR003698: IPR006638: IPR007197; KEGG: tde:TDE1575 lipoyl synthase; PFAM: Radical SAM; PRIAM: Lipoyl synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Lipoyl synthase; TIGRFAM: Lipoate synthase; PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase YP_004252111.1 COGs: COG0321 Lipoate-protein ligase B; HAMAP: Octanoyltransferase; InterPro IPR000544: IPR004143; KEGG: bfs:BF2088 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: Octanoyltransferase; TIGRFAM: Octanoyltransferase; PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: lipoate-protein ligase B YP_004252112.1 COGs: COG0177 EndoIII-related endonuclease; InterPro IPR005759: IPR003265: IPR003651; KEGG: pdi:BDI_1143 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SPTR: Endonuclease III; TIGRFAM: Endonuclease III/Nth; PFAM: HhH-GPD superfamily base excision DNA repair protein; Iron-sulfur binding domain of endonuclease III; Helix-hairpin-helix motif; TIGRFAM: endonuclease III YP_004252114.1 COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterPro IPR004811: IPR007685: IPR004095; KEGG: pdi:BDI_2052 GTP pyrophosphokinase; PFAM: RelA/SpoT; TGS; PRIAM: GTP diphosphokinase; SPTR: GTP pyrophosphokinase; TIGRFAM: RelA/SpoT protein; PFAM: Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_004252115.1 KEGG: pdi:BDI_1482 hypothetical protein; SPTR: uncharacterized protein YP_004252116.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR011659; KEGG: pdi:BDI_0713 alanyl dipeptidyl peptidase; PFAM: WD40-like Beta Propeller; SPTR: uncharacterized protein; PFAM: Prolyl oligopeptidase YP_004252117.1 COGs: COG0021 Transketolase; InterPro IPR005474: IPR005475: IPR005476; KEGG: pgi:PG1748 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Formaldehyde transketolase; SPTR: uncharacterized protein; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_004252118.1 KEGG: cvi:CV_3475 hypothetical protein; SPTR: Predicted protein; PFAM: SusD family YP_004252119.1 InterPro IPR003593; KEGG: pru:PRU_0606 AAA family ATPase; SMART: ATPase, AAA+ type, core; SPTR: ATPase, AAA family YP_004252120.1 COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: bvu:BVU_3767 transposase; PFAM: Integrase, catalytic core; SPTR: ISPsy14, transposase; PFAM: Integrase core domain YP_004252121.1 COGs: COG1484 DNA replication protein; InterPro IPR003593: IPR002611; KEGG: nha:Nham_2786 IstB-like ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: Y4pL; PFAM: IstB-like ATP binding protein YP_004252122.1 KEGG: pgn:PGN_1295 hypothetical protein; SPTR: uncharacterized protein YP_004252123.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004252124.1 COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: pdi:BDI_2594 hypothetical protein; PFAM: 2-nitropropane dioxygenase, NPD; SPTR: uncharacterized protein; PFAM: 2-nitropropane dioxygenase YP_004252125.1 InterPro IPR000182; KEGG: bfs:BF0141 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; PFAM: Acetyltransferase (GNAT) family YP_004252126.1 COGs: COG5006 permease DMT superfamily protein; InterPro IPR000620; KEGG: bfs:BF0132 transmembrane protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; PFAM: EamA-like transporter family YP_004252127.1 COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR001763: IPR013027: IPR004099: IPR001455; KEGG: sta:STHERM_c15100 hypothetical protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; SirA-like; PRIAM: CoA-disulfide reductase; SMART: Rhodanese-like; SPTR: Pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; DsrE/DsrF-like family; SirA-like protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Rhodanese-like domain YP_004252128.1 COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766; KEGG: cpi:Cpin_7155 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_004252129.1 InterPro IPR001845; KEGG: sli:Slin_5228 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family YP_004252130.1 KEGG: pgn:PGN_1889 hypothetical protein; SPTR: uncharacterized protein YP_004252131.1 HAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: bth:BT_0915 50S ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_004252132.1 COGs: COG0227 Ribosomal protein L28; HAMAP: Ribosomal protein L28; InterPro IPR001383; KEGG: bth:BT_0916 50S ribosomal protein L28; PFAM: Ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; manually curated; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_004252133.1 COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: sli:Slin_0934 peptidyl-dipeptidase DCP; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Peptidyl-dipeptidase Dcp; PFAM: Peptidase M3 YP_004252134.1 COGs: COG0563 Adenylate kinase and related kinase; HAMAP: Adenylate kinase; InterPro IPR000850: IPR006259; KEGG: ote:Oter_1863 adenylate kinase; PFAM: Adenylate kinase; SPTR: Adenylate kinase; TIGRFAM: Adenylate kinase, subfamily; PFAM: Adenylate kinase; TIGRFAM: adenylate kinases YP_004252135.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: bfr:BF1298 outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: outer membrane protein; PFAM: OmpA family YP_004252136.1 COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264: IPR001460; KEGG: gfo:GFO_1537 bifunctional transglycosylase/transpeptidase penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Bifunctional transglycosylase/transpeptidase penicillin-binding protein; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase YP_004252137.1 InterPro IPR006153; KEGG: pdi:BDI_0927 Na+/H+ exchange protein; PFAM: Cation/H+ exchanger; SPTR: Na+/H+ exchange protein YP_004252138.1 COGs: COG0428 divalent heavy-metal cations transporter; InterPro IPR003689; KEGG: smu:SMU.2069 zinc transporter ZupT; PFAM: Zinc/iron permease; SPTR: uncharacterized protein; PFAM: ZIP Zinc transporter YP_004252139.1 KEGG: sli:Slin_0364 hypothetical protein; SPTR: uncharacterized protein YP_004252140.1 COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: bvu:BVU_2630 thiamine biosynthesis lipoprotein ApbE precursor; PFAM: ApbE-like lipoprotein; SPTR: Thiamine biosynthesis lipoprotein ApbE; PFAM: ApbE family YP_004252141.1 COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641: IPR010827; KEGG: pdi:BDI_3218 hypothetical protein; PFAM: Patatin; Surface antigen variable number; SPTR: exported protein; PFAM: Patatin-like phospholipase YP_004252142.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR003593: IPR002078; KEGG: fjo:Fjoh_5047 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Response regulatory protein, sigma 54 related; PFAM: Response regulator receiver domain; Sigma-54 interaction domain YP_004252143.1 COGs: COG1160 GTPase; InterPro IPR005225: IPR003577: IPR002917; KEGG: ckr:CKR_2050 hypothetical protein; PFAM: GTP-binding protein, HSR1-related; SMART: Ras small GTPase, Ras type; SPTR: Fe-hydrogenase assembly protein (C-terminal); GTPase activity domain; TIGRFAM: Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain YP_004252144.1 COGs: COG1284 conserved hypothetical protein; InterPro IPR003740: IPR019264; KEGG: chy:CHY_0164 hypothetical protein; PFAM: Protein of unknown function DUF2179; Protein of unknown function DUF161; SPTR: uncharacterized protein; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179) YP_004252145.1 COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: bfs:BF3933 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: uncharacterized protein; PFAM: Bacterial regulatory proteins, tetR family YP_004252146.1 COGs: COG0332 3-oxoacyl-ACP; InterPro IPR013751: IPR013747; KEGG: pdi:BDI_1497 3-oxoacyl-ACP synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: uncharacterized protein; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-ACP synthase III YP_004252147.1 KEGG: pru:PRU_1415 thiol:disulfide interchange protein; SPTR: exported cytochrome C biogenesis-related protein; PFAM: Disulphide bond corrector protein DsbC YP_004252148.1 InterPro IPR019734; KEGG: bth:BT_1894 TPR repeat-containing protein; SPTR: uncharacterized protein YP_004252149.1 InterPro IPR012910; KEGG: pmz:HMPREF0659_A7349 hypothetical protein; PFAM: TonB-dependent receptor, plug; SPTR: uncharacterized protein YP_004252150.1 KEGG: bfs:BF3825 hypothetical protein; SPTR: Predicted protein YP_004252151.1 InterPro IPR019115; KEGG: pmz:HMPREF0659_A6434 conserved hypothetical protein TIGR01200; PFAM: Protein of unknown function, Porph ging; SPTR: Porphyromonas gingivalis family protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200 YP_004252152.1 COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: bfs:BF3820 dehydrogenase; PFAM: Radical SAM; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily YP_004252153.1 KEGG: bfs:BF3819 hypothetical protein; SPTR: uncharacterized protein YP_004252154.1 KEGG: pdi:BDI_3443 lipoprotein; SPTR: uncharacterized protein YP_004252155.1 KEGG: dra:DR_B0059 transposase, SPTR: uncharacterized protein YP_004252156.1 COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593: IPR005074: IPR001140: IPR003439; KEGG: pru:PRU_1121 peptide ABC transporter permease/ATP-binding protein; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Peptide ABC transporter, permease/ATP-binding protein; PFAM: ABC transporter transmembrane region; Peptidase C39 family; ABC transporter YP_004252157.1 KEGG: cel:D1081.10 hypothetical protein; SPTR: uncharacterized protein YP_004252158.1 InterPro IPR011662: IPR012910; KEGG: cpi:Cpin_2080 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004252159.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: cpi:Cpin_2882 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004252160.1 InterPro IPR006597: IPR019734: IPR001440; KEGG: bth:BT_2243 hypothetical protein; PFAM: Sel1-like; Tetratricopeptide TPR-1; SPTR: Protein prenyltransferase; PFAM: Sel1 repeat YP_004252161.1 InterPro IPR015032; KEGG: cph:Cpha266_0160 TPR repeat-containing protein; PFAM: MTH538 TIR-like domain; SPTR: TPR repeat-containing protein; PFAM: MTH538 TIR-like domain (DUF1863) YP_004252162.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR000792: IPR007627: IPR013249; KEGG: bfr:BF0756 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: phage transcriptional regulator, ArpU family; RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252163.1 COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002142: IPR002810; KEGG: pdi:BDI_0525 membrane-bound serine protease; PFAM: Peptidase S49; Nodulation efficiency, NfeD; SPTR: uncharacterized protein; PFAM: Peptidase S49; NfeD-like YP_004252165.1 COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006102: IPR006103; KEGG: gym:GYMC10_1237 glycoside hydrolase 2 sugar binding protein; PFAM: Glycoside hydrolase 2, TIM barrel; Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; PRIAM: Beta-mannosidase; SPTR: Glycoside hydrolase 2 sugar binding; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain YP_004252166.1 COGs: COG2981 Uncharacterized protein involved in cysteine biosynthesis; KEGG: cpi:Cpin_1193 protein of unknown function DUF540; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF540) YP_004252167.1 COGs: COG0015 Adenylosuccinate lyase; InterPro IPR004769: IPR000362: IPR013539; KEGG: pru:PRU_0056 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase C-terminal; Fumarate lyase; PRIAM: Adenylosuccinate lyase; SPTR: Adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase YP_004252168.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: pdi:BDI_2424 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein, MsbA family; PFAM: ABC transporter transmembrane region; ABC transporter YP_004252169.1 KEGG: gur:Gura_3212 S23 ribosomal protein; SPTR: S23 ribosomal protein; PFAM: S23 ribosomal protein YP_004252170.1 COGs: COG0780 Enzyme related to GTP cyclohydrolase I; KEGG: abc:ACICU_02514 7-cyano-7-deazaguanine reductase; SPTR: GTP cyclohydrolase I family protein YP_004252171.1 COGs: COG0793 Periplasmic protease; InterPro IPR004447: IPR001478: IPR005151; KEGG: pdi:BDI_3349 carboxy-terminal processing protease precursor; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxy-terminal processing protease; TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004252172.1 COGs: COG0622 phosphoesterase; InterPro IPR000979: IPR004843; KEGG: bfr:BF3713 phosphoesterase; PFAM: Metallophosphoesterase; SPTR: uncharacterized protein; TIGRFAM: Phosphodiesterase MJ0936; TIGRFAM: phosphoesterase, MJ0936 family YP_004252173.1 COGs: COG0648 Endonuclease IV; HAMAP: Endodeoxyribonuclease IV; InterPro IPR001719: IPR012307; KEGG: pdi:BDI_1200 endonuclease IV; PFAM: Xylose isomerase, TIM barrel domain; PRIAM: Deoxyribonuclease IV (phage-T(4)-induced); SMART: Endodeoxyribonuclease IV; SPTR: Probable endonuclease 4; TIGRFAM: Endodeoxyribonuclease IV; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1) YP_004252174.1 COGs: COG0326 Molecular chaperone HSP90 family; InterPro IPR003594: IPR020576; KEGG: pdi:BDI_0681 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Heat shock protein HtpG; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein YP_004252175.1 COGs: COG2855 membrane protein; InterPro IPR018383; KEGG: cpi:Cpin_3720 hypothetical protein; PFAM: Uncharacterised protein family UPF0324, prokaryote; SPTR: Predicted membrane protein; PFAM: Conserved hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein YP_004252176.1 COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterPro IPR001030: IPR000573; KEGG: mka:MK1440 3-isopropylmalate dehydratase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: 3-isopropylmalate dehydratase large subunit 1; PFAM: Aconitase C-terminal domain; Aconitase (aconitate hydratase) YP_004252177.1 COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: sth:STH1343 polypeptide deformylase; PFAM: Formylmethionine deformylase; SPTR: Peptide deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase YP_004252178.1 KEGG: amu:Amuc_0576 peptidase M16 domain protein; SPTR: Peptidase M16 domain protein YP_004252179.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593: IPR003439; KEGG: pdi:BDI_1889 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004252180.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: amu:Amuc_1010 response regulator receiver protein; PFAM: LytTr, DNA-binding domain; SPTR: Response regulator; PFAM: LytTr DNA-binding domain YP_004252181.1 KEGG: ppr:PBPRA0358 transposase; SPTR: Transposase YP_004252183.1 KEGG: dal:Dalk_0004 peptidase C25 gingipain; SPTR: Peptidase C25 gingipain; PFAM: Propeptide_C25; Peptidase C25 YP_004252184.1 KEGG: pay:PAU_01277 phospholipase A; SPTR: Phospholipase A1 YP_004252185.1 KEGG: net:Neut_1985 hypothetical protein; SPTR: uncharacterized protein YP_004252186.1 COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR005888: IPR001509; KEGG: bvu:BVU_2405 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_004252187.1 COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: pgn:PGN_0548 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: uncharacterized protein; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_004252188.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: bvu:BVU_3950 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: uncharacterized protein; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_004252189.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005907: IPR005835; KEGG: pdi:BDI_0650 glucose-1-phosphate thymidyl transferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form YP_004252190.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: cpi:Cpin_0390 glycosyl transferase 4; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Glycosyl transferase, group 4 family protein; PFAM: Glycosyl transferase 4 YP_004252191.1 COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: bfs:BF0733 capsular polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR: capsular polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein YP_004252192.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: swi:Swit_2642 sugar transferase; PFAM: Bacterial sugar transferase; SPTR: Sugar transferase; PFAM: Bacterial sugar transferase YP_004252193.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: bfs:BF1376 DegT/DnrJ/EryC1/StrS family amino sugar synthetase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004252194.1 COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: abu:Abu_0692 hexose epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_004252195.1 COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: pdi:BDI_1455 hypothetical protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: uncharacterized protein; PFAM: GlcNAc-PI de-N-acetylase YP_004252196.1 COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: cbk:CLL_A0825 hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: uncharacterized protein; PFAM: haloacid dehalogenase-like hydrolase YP_004252197.1 COGs: COG0439 Biotin carboxylase; InterPro IPR003806; KEGG: mpl:Mpal_0836 protein of unknown function DUF201; PFAM: ATP-grasp fold, DUF201-type; SPTR: uncharacterized protein; PFAM: ATP-grasp domain YP_004252198.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dth:DICTH_0439 WblI protein; PFAM: Glycosyl transferase, group 1; SPTR: uncharacterized protein; PFAM: Glycosyl transferases group 1 YP_004252199.1 KEGG: svo:SVI_0621 hypothetical protein; SPTR: uncharacterized protein YP_004252200.1 KEGG: bvu:BVU_4011 transposase; SPTR: uncharacterized protein; PFAM: Transposase domain (DUF772) YP_004252201.1 KEGG: bth:BT_3557 transposase; SPTR: transposase YP_004252202.1 KEGG: sun:SUN_0099 hypothetical protein; SPTR: uncharacterized protein; PFAM: Glycosyl transferases group 1 YP_004252203.1 KEGG: mpi:Mpet_1072 hypothetical protein; SPTR: uncharacterized protein YP_004252204.1 KEGG: gct:GC56T3_3172 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004252205.1 InterPro IPR001962; KEGG: mac:MA0051 hypothetical protein; PFAM: Asparagine synthase; SPTR: Predicted protein; PFAM: Asparagine synthase YP_004252206.1 InterPro IPR002797; KEGG: mma:MM_1124 O-antigen translocase; PFAM: Polysaccharide biosynthesis protein; SPTR: O-antigen translocase; manually curated; PFAM: Polysaccharide biosynthesis protein YP_004252207.1 KEGG: bfs:pBF9343.33c hypothetical protein; SPTR: uncharacterized protein YP_004252208.1 KEGG: bfs:pBF9343.34c hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004252209.1 COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: pdi:BDI_1308 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: uncharacterized protein; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004252210.1 COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: pdi:BDI_2184 hexapeptide transferase, acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; SPTR: uncharacterized protein; PFAM: Bacterial transferase hexapeptide (three repeats) YP_004252211.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: cpi:Cpin_4762 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: uncharacterized protein; manually curated; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004252212.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: pgn:PGN_0168 oxidoreductase; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: uncharacterized protein; PFAM: Oxidoreductase, NAD-binding Rossmann fold; Oxidoreductase, C-terminal alpha/beta domain YP_004252213.1 KEGG: tai:Taci_1617 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004252214.1 COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: bfr:BF2297 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: uncharacterized protein; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004252215.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002797; KEGG: pdi:BDI_3824 flippase; PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein YP_004252216.1 KEGG: pru:PRU_1394 hypothetical protein; SPTR: uncharacterized protein YP_004252217.1 InterPro IPR007016; KEGG: pdi:BDI_0438 hypothetical protein; PFAM: O-antigen ligase-related; SPTR: uncharacterized protein; PFAM: O-Antigen ligase YP_004252218.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bvu:BVU_3450 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: uncharacterized protein; PFAM: Glycosyl transferase 2 YP_004252219.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: amt:Amet_0209 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase; PFAM: Glycosyl transferases group 1 YP_004252220.1 KEGG: phe:Phep_3922 hypothetical protein; SPTR: Predicted protein YP_004252221.1 KEGG: bfr:BF0819 acyl carrier protein; SPTR: Acyl carrier protein; PFAM: Phosphopantetheine attachment site YP_004252222.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: pdi:BDI_0566 3-oxoacyl-ACP reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SPTR: 3-oxoacyl-ACP reductase; PFAM: short chain dehydrogenase YP_004252223.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: asa:ASA_0153 3-oxoacyl-[acyl-carrier protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SPTR: 3-oxoacyl-ACP reductase; PFAM: short chain dehydrogenase YP_004252224.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: pam:PANA_2273 FadD; PFAM: AMP-dependent synthetase/ligase; PRIAM: o-succinylbenzoate--CoA ligase; SPTR: uncharacterized protein; PFAM: AMP-binding enzyme YP_004252225.1 KEGG: pam:PANA_2276 hypothetical protein; SPTR: Predicted protein YP_004252226.1 COGs: COG0332 3-oxoacyl-ACP; InterPro IPR013751: IPR013747; KEGG: bfr:BF0820 3-oxoacyl-ACP synthase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-ACP synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-ACP synthase III YP_004252227.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: bfr:BF0826 hypothetical protein; SPTR: uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily YP_004252228.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: bfs:BF1376 DegT/DnrJ/EryC1/StrS family amino sugar synthetase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004252229.1 COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: swi:Swit_2642 sugar transferase; PFAM: Bacterial sugar transferase; SPTR: Sugar transferase; PFAM: Bacterial sugar transferase YP_004252230.1 COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: bfs:BF0733 capsular polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR: capsular polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein YP_004252231.1 KEGG: coc:Coch_1110 WxcM domain protein; SPTR: uncharacterized protein YP_004252232.1 COGs: COG3765 Chain length determinant protein; InterPro IPR003856; KEGG: coc:Coch_0472 lipopolysaccharide biosynthesis protein; PFAM: Lipopolysaccharide biosynthesis; SPTR: Lipopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein YP_004252233.1 InterPro IPR003856; KEGG: coc:Coch_0472 lipopolysaccharide biosynthesis protein; PFAM: Lipopolysaccharide biosynthesis; SPTR: Lipopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein YP_004252234.1 COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715: IPR019554; KEGG: bfs:BF1707 capsule polysaccharide export protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; SPTR: uncharacterized protein; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain YP_004252235.1 COGs: COG0250 Transcription antiterminator; InterPro IPR006645; KEGG: bfs:BF1709 LPS-related regulatory protein; PFAM: Transcription antitermination protein, NusG, N-terminal; SMART: Transcription antitermination protein, NusG, N-terminal; SPTR: uncharacterized protein; PFAM: Transcription termination factor nusG YP_004252236.1 COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942: IPR000748: IPR006145; KEGG: bth:BT_3872 ribosomal large subunit pseudouridine synthase B; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase YP_004252237.1 COGs: COG0795 permease; InterPro IPR005495; KEGG: bvu:BVU_3161 hypothetical protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YjgP/YjgQ family YP_004252238.1 COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; InterPro IPR004803: IPR002616; KEGG: pdi:BDI_0774 tRNA-guanine transglycosylase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming YP_004252239.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: bvu:BVU_1991 dipeptidyl peptidase IV; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; PRIAM: Dipeptidyl-peptidase IV; SPTR: uncharacterized protein; PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region YP_004252240.1 COGs: COG2195 Di- and tripeptidase; InterPro IPR001160: IPR002933: IPR011650; KEGG: cph:Cpha266_1680 Pep581 peptidase. Metallo peptidase. MEROPS family M20C; PFAM: Peptidase M20, dimerisation; Peptidase M20; PRIAM: Xaa-His dipeptidase; SPTR: Aminoacyl-histidine dipeptidase; TIGRFAM: Peptidase M20C, Xaa-His dipeptidase; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: aminoacyl-histidine dipeptidase YP_004252241.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: ssm:Spirs_2245 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: AMP-binding enzyme family protein; PFAM: AMP-binding enzyme YP_004252242.1 InterPro IPR002931; KEGG: bfr:BF1133 hypothetical protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Transglutaminase-family protein; PFAM: Transglutaminase-like superfamily YP_004252243.1 KEGG: tbr:Tb927.4.2230 glycosyltransferase ALG2; SPTR: KIR3DL4 YP_004252244.1 COGs: COG3142 Uncharacterized protein involved in copper resistance; HAMAP: Copper homeostasis protein cutC; InterPro IPR005627; KEGG: bvu:BVU_3897 copper homeostasis protein; PFAM: CutC; SPTR: Uncharacterized protein involved in copper resistance; PFAM: CutC family YP_004252245.1 COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: bth:BT_1842 alpha-L-fucosidase precursor; PFAM: Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR: uncharacterized protein; PFAM: Alpha-L-fucosidase YP_004252246.1 COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: phe:Phep_0882 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; SPTR: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (Catechol pathway); PFAM: Fumarylacetoacetate (FAA) hydrolase YP_004252247.1 InterPro IPR000415; KEGG: dau:Daud_1944 nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase; PFAM: Nitroreductase YP_004252248.1 COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: pdi:BDI_1187 hypothetical protein; SPTR: uncharacterized protein YP_004252249.1 KEGG: zpr:ZPR_3997 hypothetical protein; SPTR: uncharacterized protein YP_004252250.1 KEGG: bfs:BF4073 hypothetical protein; SPTR: uncharacterized protein YP_004252251.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bfs:BF4074 hypothetical protein; SPTR: uncharacterized protein YP_004252252.1 InterPro IPR001668; KEGG: bfr:BF4269 protein involved in recombination; PFAM: Plasmid recombination enzyme; SPTR: uncharacterized protein; PFAM: Plasmid recombination enzyme YP_004252253.1 KEGG: bfs:BF4076 hypothetical protein; SPTR: uncharacterized protein YP_004252254.1 KEGG: bfr:BF4271 hypothetical protein; SPTR: uncharacterized protein YP_004252255.1 KEGG: bfs:BF4078 hypothetical protein; SPTR: uncharacterized protein YP_004252256.1 KEGG: bfs:BF4079 transmembrane protein; SPTR: uncharacterized protein YP_004252257.1 COGs: COG4973 Site-specific recombinase XerC; InterPro IPR002104; KEGG: bfs:BF4080 bacteriophage integrase; PFAM: Integrase, catalytic core, phage; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase YP_004252258.1 KEGG: bvu:BVU_1469 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2795) YP_004252259.1 COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: dka:DKAM_0274 cation efflux system protein; PFAM: Cation efflux protein; SPTR: cation efflux system protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_004252260.1 COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807: IPR000644; KEGG: bvu:BVU_0055 chloride channel protein; PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; SPTR: chloride channel protein; PFAM: CBS domain; Voltage gated chloride channel YP_004252261.1 KEGG: pdi:BDI_1910 hypothetical protein; SPTR: uncharacterized protein YP_004252262.1 COGs: COG0063 sugar kinase; InterPro IPR004443: IPR000631; KEGG: pdi:BDI_1900 sugar kinase; PFAM: YjeF-related protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF N-terminal region; yjeF C-terminal region, hydroxyethylthiazole kinase-related YP_004252263.1 COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR005279: IPR000109; KEGG: bth:BT_0580 H+/peptide symporter; PFAM: Oligopeptide transporter; SPTR: uncharacterized protein; TIGRFAM: Amino acid/peptide transporter; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial YP_004252264.1 COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR005279: IPR000109; KEGG: bfs:BF2632 transport-related membrane protein; PFAM: Oligopeptide transporter; SPTR: H+/peptide symporter; TIGRFAM: Amino acid/peptide transporter; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial YP_004252265.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004252266.1 KEGG: cts:Ctha_1000 conserved hypothetical lipoprotein; SPTR: uncharacterized protein YP_004252267.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: cts:Ctha_1001 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug domain protein; PFAM: TonB-dependent Receptor Plug Domain YP_004252268.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005; KEGG: bfs:BF1972 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC family transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004252269.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005; KEGG: bfr:BF1920 transcription regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcription regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004252270.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004252271.1 KEGG: cpi:Cpin_3290 hypothetical protein; SPTR: uncharacterized protein YP_004252272.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004252273.1 InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_3288 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004252274.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004252275.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR000792: IPR014284: IPR014327: IPR007627: IPR 013249; KEGG: phe:Phep_0443 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252276.1 COGs: COG1225 Peroxiredoxin; InterPro IPR013740; KEGG: cpi:Cpin_3292 redoxin domain protein; PFAM: Redoxin; SPTR: Thioredoxin family protein; PFAM: Redoxin YP_004252277.1 KEGG: cpi:Cpin_5144 hypothetical protein; SPTR: Cell wall protein DAN4 YP_004252278.1 KEGG: cpi:Cpin_5145 hypothetical protein; SPTR: uncharacterized protein YP_004252279.1 KEGG: cpi:Cpin_5146 hypothetical protein; SPTR: uncharacterized protein YP_004252280.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004252281.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2219 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004252282.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR000792: IPR014284: IPR007627: IPR013249; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252283.1 COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: dsa:Desal_3550 amino acid permease-associated region; PFAM: Amino acid permease domain; SPTR: Amino acid transporters; PFAM: Amino acid permease; TIGRFAM: glutamate/gamma-aminobutyrate antiporter YP_004252284.1 COGs: COG2323 membrane protein; InterPro IPR007353; KEGG: pmz:HMPREF0659_A5517 hypothetical protein; PFAM: Protein of unknown function DUF421; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF421) YP_004252285.1 COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461; KEGG: bth:BT_1270 Na+/H+ antiporter; PFAM: Na+/H+ antiporter NhaC-like; SPTR: Na+/H+ antiporter; PFAM: Na+/H+ antiporter family YP_004252286.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bvu:BVU_4076 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein YP_004252287.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: bth:BT_1694 AcrB/AcrD/AcrF family transporter; PFAM: Acriflavin resistance protein; SPTR: uncharacterized protein; PFAM: AcrB/AcrD/AcrF family YP_004252288.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: pdi:BDI_1311 periplasmic linker protein, multidrug resistance protein; PFAM: Secretion protein HlyD; SPTR: Periplasmic linker protein, multidrug resistance protein; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit YP_004252289.1 COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; InterPro IPR019863: IPR019196; KEGG: fjo:Fjoh_2721 ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like protein; PFAM: ABC-type uncharacterised transport system; SPTR: Possible gliding motility protein GldG; TIGRFAM: Gliding-associated ABC transporter substrate-binding GldG; PFAM: ABC-type uncharacterized transport system; TIGRFAM: gliding motility-associated ABC transporter permease GldF; gliding-associated ABC transporter substrate-binding component GldG YP_004252290.1 COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055: IPR013520; KEGG: bvu:BVU_2893 DNA Pol III epsilon chain; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: uncharacterized protein; PFAM: Exonuclease YP_004252291.1 COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: bth:BT_1364 DNA polymerase III, beta chain; PFAM: DNA polymerase III, beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III, beta chain; SPTR: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit YP_004252292.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865: IPR000994; KEGG: bvu:BVU_2073 Xaa-Pro aminopeptidase; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; SPTR: uncharacterized protein; PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase M24 YP_004252293.1 KEGG: aap:NT05HA_0543 hypothetical protein; SPTR: uncharacterized protein YP_004252295.1 InterPro IPR017515: IPR004360; KEGG: fbc:FB2170_09651 glyoxalase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase; TIGRFAM: Methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase YP_004252296.1 COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: fbc:FB2170_09656 propionyl-CoA carboxylase beta chain; PFAM: Carboxyl transferase; PRIAM: Propionyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase beta chain; PFAM: Carboxyl transferase domain YP_004252297.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: pmz:HMPREF0659_A6883 biotin-requiring enzyme; PFAM: Biotin/lipoyl attachment; SPTR: Methylmalonyl-CoA decarboxylase, gamma subunit; PFAM: Biotin-requiring enzyme YP_004252298.1 COGs: COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; InterPro IPR005661; KEGG: toc:Toce_1828 glutaconyl-CoA decarboxylase beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; PRIAM: Oxaloacetate decarboxylase; SPTR: uncharacterized protein; TIGRFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; PFAM: subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit YP_004252299.1 COGs: COG3189 conserved hypothetical protein; InterPro IPR007438; KEGG: bth:BT_4698 hypothetical protein; PFAM: Protein of unknown function DUF488; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF488 YP_004252300.1 COGs: COG2195 Di- and tripeptidase; HAMAP: Peptidase T; InterPro IPR010161: IPR002933: IPR011650; KEGG: pgn:PGN_1517 peptidase T; PFAM: Peptidase M20, dimerisation; Peptidase M20; PRIAM: Tripeptide aminopeptidase; SPTR: uncharacterized protein; TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T YP_004252301.1 COGs: COG1297 membrane protein; InterPro IPR004813: IPR004814; KEGG: pgn:PGN_1518 oligopeptide transporter; PFAM: Oligopeptide transporter OPT superfamily; SPTR: oligopeptide transporter; TIGRFAM: Oligopeptide transporter OPT; Oligopeptide transporter OPT superfamily; PFAM: OPT oligopeptide transporter protein; TIGRFAM: oligopeptide transporters, OPT superfamily; oligopeptide transporter, OPT family YP_004252302.1 InterPro IPR002035; KEGG: bmd:BMD_2124 hypothetical protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: von Willebrand factor type A domain protein; PFAM: von Willebrand factor type A domain YP_004252303.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR003593: IPR011704; KEGG: drm:Dred_1422 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core; SPTR: ATPase associated with various cellular activities, AAA_5; PFAM: AAA domain (dynein-related subfamily) YP_004252304.1 InterPro IPR011701; KEGG: pdi:BDI_0459 macrolide efflux pump; PFAM: Major facilitator superfamily MFS-1; SPTR: Macrolide-efflux protein; PFAM: Major Facilitator Superfamily YP_004252305.1 COGs: COG3560 oxidoreductase related to nitroreductase; InterPro IPR000415; KEGG: bth:BT_3392 nitroreductase; PFAM: Nitroreductase-like; SPTR: Predicted oxidoreductase related to nitroreductase; PFAM: Nitroreductase YP_004252306.1 COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: bth:BT_0181 NADH dehydrogenase/NAD(P)H nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase; PFAM: Nitroreductase YP_004252307.1 COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: bth:BT_0584 outer membrane protein; SPTR: Outer membrane protein YP_004252308.1 COGs: COG0703 Shikimate kinase; HAMAP: Shikimate kinase; InterPro IPR000623; KEGG: coc:Coch_1534 shikimate kinase; PFAM: Shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; PFAM: Shikimate kinase YP_004252309.1 COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205; KEGG: pdi:BDI_3197 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: uncharacterized protein; PFAM: DNA gyrase/topoisomerase IV, subunit A YP_004252310.1 COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR003594: IPR001241: IPR013506: IPR006171; KEGG: phe:Phep_3475 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA topoisomerase type IIA subunit B region 2 domain protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus YP_004252311.1 COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004408: IPR004143; KEGG: pdi:BDI_2563 biotin-(acetyl-CoA carboxylase) synthetase; PFAM: Biotin/lipoate A/B protein ligase; SPTR: uncharacterized protein; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region YP_004252312.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659: IPR006665; KEGG: phe:Phep_2066 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family YP_004252313.1 COGs: COG1592 Rubrerythrin; InterPro IPR003251; KEGG: pgn:PGN_0302 rubrerythrin; PFAM: Rubrerythrin; SPTR: Rubrerythrin; PFAM: Rubrerythrin YP_004252314.1 COGs: COG1509 Lysine 2 3-aminomutase; KEGG: mbu:Mbur_0186 L-lysine 2,3-aminomutase; SPTR: Lysine 2,3-aminomutase related protein enzyme; TIGRFAM: KamA family protein YP_004252315.1 InterPro IPR019734: IPR001440; KEGG: bfs:BF4280 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR domain protein YP_004252316.1 COGs: COG3176 hemolysin; InterPro IPR002123; KEGG: pdi:BDI_2495 hypothetical protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Acyltransferase YP_004252317.1 KEGG: lsg:lse_0927 transcriptional regulator, LytR family YP_004252318.1 KEGG: bfr:BF2215 hypothetical protein; SPTR: uncharacterized protein YP_004252319.1 KEGG: bfs:BF2265 lipoprotein; SPTR: uncharacterized protein YP_004252320.1 InterPro IPR014941; KEGG: bfr:BF2211 hypothetical protein; PFAM: Protein of unknown function DUF1812; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1812) YP_004252321.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: bth:BT_0999 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; PFAM: Acetyltransferase (GNAT) family YP_004252322.1 COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: cbk:CLL_A3478 hypothetical protein; SPTR: uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily YP_004252323.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR004812: IPR011701; KEGG: bfs:BF2930 antibiotic resistance transport membrane protein; PFAM: Major facilitator superfamily MFS-1; SPTR: uncharacterized protein; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily YP_004252324.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005; KEGG: pdi:BDI_0340 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004252325.1 COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: pdi:BDI_1659 transcriptional regulator; PFAM: Helix-turn-helix, HxlR type; SPTR: uncharacterized protein; PFAM: HxlR-like helix-turn-helix YP_004252326.1 InterPro IPR002818; KEGG: bvu:BVU_2065 protease I; PFAM: ThiJ/PfpI; SPTR: protease I; PFAM: DJ-1/PfpI family YP_004252327.1 COGs: COG1564 Thiamine pyrophosphokinase; InterPro IPR006282: IPR007371; KEGG: pdi:BDI_3529 hypothetical protein; PFAM: Thiamin pyrophosphokinase, catalytic domain; SPTR: Thiamine pyrophosphokinase; TIGRFAM: Thiamin pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic domain; TIGRFAM: thiamine pyrophosphokinase YP_004252328.1 COGs: COG3201 Nicotinamide mononucleotide transporter; InterPro IPR006419; KEGG: pdi:BDI_3530 membrane transporter involved in nicotinamide mononucleotide transport; PFAM: Nicotinamide mononucleotide transporter PnuC; SPTR: uncharacterized protein; TIGRFAM: Nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC YP_004252329.1 KEGG: bth:BT_4497 hypothetical protein; SPTR: uncharacterized protein; PFAM: Nitrous oxide-stimulated promoter YP_004252330.1 KEGG: pdi:BDI_1246 hypothetical protein; SPTR: uncharacterized protein YP_004252332.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: bfs:BF3596 cation transport related membrane protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: transmembrane cation efflux protein; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004252333.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: bfs:BF3597 hypothetical protein; PFAM: Cyclic nucleotide-binding; SPTR: regulatory protein; PFAM: Cyclic nucleotide-binding domain YP_004252334.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR001808: IPR000595: IPR000524; KEGG: bvu:BVU_2982 transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, Crp; SPTR: uncharacterized protein; PFAM: IclR helix-turn-helix domain; Cyclic nucleotide-binding domain YP_004252336.1 COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; KEGG: cli:Clim_1980 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004252337.1 COGs: COG1151 6Fe-6S prismane cluster-containing protein; HAMAP: Hybrid cluster protein; InterPro IPR010048: IPR004137; KEGG: bvu:BVU_2981 hydroxylamine reductase; PFAM: Prismane; SPTR: Hydroxylamine reductase; TIGRFAM: Hybrid cluster protein; PFAM: Prismane/CO dehydrogenase; TIGRFAM: hydroxylamine reductase YP_004252338.1 COGs: COG0657 Esterase/lipase; KEGG: str:Sterm_0318 alpha/beta hydrolase fold-3 domain protein; SPTR: Alpha/beta hydrolase fold-3 domain protein; PFAM: alpha/beta hydrolase fold YP_004252339.1 KEGG: str:Sterm_1353 hypothetical protein; SPTR: uncharacterized protein YP_004252340.1 KEGG: bth:BT_4498 hypothetical protein; SPTR: uncharacterized protein YP_004252341.1 KEGG: mag:amb0575 hypothetical protein; SPTR: uncharacterized protein; PFAM: Spermine/spermidine synthase YP_004252342.1 InterPro IPR019734; KEGG: amr:AM1_E0198 TPR repeat-containing protein; SPTR: TPR repeat domain protein YP_004252343.1 COGs: COG1488 Nicotinic acid phosphoribosyltransferase; HAMAP: Nicotinate phosphoribosyltransferase; InterPro IPR006406: IPR015977; KEGG: csa:Csal_0941 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; PRIAM: Nicotinate phosphoribosyltransferase; SPTR: Nicotinate phosphoribosyltransferase; TIGRFAM: Nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: nicotinate phosphoribosyltransferase YP_004252344.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: ote:Oter_1043 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain YP_004252345.1 KEGG: brm:Bmur_1722 hypothetical protein; SPTR: uncharacterized protein YP_004252346.1 COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR000866; KEGG: bth:BT_3069 disulphide-isomerase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family; Protein of unknown function, DUF255 YP_004252347.1 KEGG: bth:BT_3274 hypothetical protein; SPTR: uncharacterized protein YP_004252348.1 KEGG: bth:BT_3273 hypothetical protein; SPTR: lipoprotein YP_004252349.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004252350.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: bth:BT_3271 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004252351.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: Sigma factor regulatory protein, FecR/PupR family; PFAM: FecR protein YP_004252352.1 COGs: COG2315 conserved hypothetical protein; KEGG: pdi:BDI_1939 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF419) YP_004252353.1 COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: pdi:BDI_3557 outer membrane protein; SPTR: Multidrug resistance protein RomA; PFAM: Metallo-beta-lactamase superfamily YP_004252354.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005; KEGG: cpi:Cpin_3787 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: uncharacterized protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004252355.1 COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); InterPro IPR000425; KEGG: bth:BT_4718 aquaporin; PFAM: Major intrinsic protein; SPTR: Aquaporin Z; PFAM: Major intrinsic protein YP_004252356.1 COGs: COG2195 Di- and tripeptidase; HAMAP: Peptidase T; InterPro IPR010161: IPR002933: IPR011650; KEGG: ttm:Tthe_0833 peptidase T; PFAM: Peptidase M20, dimerisation; Peptidase M20; PRIAM: Tripeptide aminopeptidase; SPTR: Peptidase T; TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T YP_004252357.1 COGs: COG0442 Prolyl-tRNA synthetase; HAMAP: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; InterPro IPR004499: IPR002314: IPR004154: IPR016061; KEGG: bth:BT_0929 prolyl-tRNA synthetase; PFAM: Prolyl-tRNA synthetase, class II, C-terminal; Anticodon-binding; Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; PRIAM: Proline--tRNA ligase; SPTR: Prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); Prolyl-tRNA synthetase, C-terminal; TIGRFAM: prolyl-tRNA synthetase, family I YP_004252358.1 KEGG: bvu:BVU_2304 hypothetical protein; SPTR: uncharacterized protein YP_004252359.1 InterPro IPR005017; KEGG: bvu:BVU_2305 hypothetical protein; PFAM: Membrane protein, aromatic hydrocarbon degradation; SPTR: uncharacterized protein; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX) YP_004252360.1 COGs: COG5006 permease DMT superfamily protein; InterPro IPR000620; KEGG: pdi:BDI_3450 integral membrane protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Membrane protein; PFAM: EamA-like transporter family YP_004252361.1 COGs: COG0621 2-methylthioadenine synthetase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; InterProIPR006638: IPR005839: IPR006463: IPR013848: IPR 007197: IPR002792; KEGG: pdi:BDI_2415 (dimethylallyl)adenosine tRNA methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB; Methylthiotransferase; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family YP_004252362.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: pdi:BDI_3015 tRNA/rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: RNA methylase, SpoU family; PFAM: SpoU rRNA Methylase YP_004252363.1 COGs: COG0294 Dihydropteroate synthase; InterPro IPR006390: IPR000489; KEGG: bfs:BF0396 dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase YP_004252364.1 InterPro IPR011630; KEGG: bvu:BVU_0468 hypothetical protein; PFAM: Protein of unknown function DUF1599; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF1599) YP_004252365.1 InterPro IPR011637; KEGG: bfr:BF3957 hypothetical protein; PFAM: DoxX; SPTR: Triose-phosphate isomerase; PFAM: DoxX YP_004252366.1 COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652; KEGG: bvu:BVU_0466 triosephosphate isomerase; PFAM: Triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase YP_004252367.1 InterPro IPR005317; KEGG: bfs:BF3247 membrane attached peptidase; PFAM: Peptidase M49, dipeptidyl-peptidase III; PRIAM: Dipeptidyl-peptidase III; SPTR: uncharacterized protein; PFAM: Peptidase M49 YP_004252368.1 KEGG: phe:Phep_2902 hypothetical protein; SPTR: uncharacterized protein YP_004252369.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: ssm:Spirs_0516 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase (SpoU); PFAM: SpoU rRNA Methylase YP_004252370.1 InterPro IPR000086; KEGG: bth:BT_1833 two-component system sensor histidine kinase; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein; PFAM: NUDIX domain YP_004252371.1 COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: bvu:BVU_0996 DNA-binding protein HU-beta; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: DNA-binding protein HU; PFAM: Bacterial DNA-binding protein YP_004252372.1 COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; InterPro IPR006076; KEGG: pdi:BDI_1753 NAD-utilizing dehydrogenase; PFAM: FAD dependent oxidoreductase; SPTR: uncharacterized protein; PFAM: HI0933-like protein; FAD dependent oxidoreductase YP_004252373.1 KEGG: rbi:RB2501_02695 PorT protein; SPTR: PorT protein; TC 1.B.44.1.1 YP_004252374.1 COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: pgi:PG0676 short chain dehydrogenase/reductase oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Serine 3-dehydrogenase; SPTR: Oxidoreductase, short chain dehydrogenase/reductase; PFAM: short chain dehydrogenase YP_004252375.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003593: IPR012763: IPR003959; KEGG: bfs:BF3071 DNA polymerase III; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA polymerase III subunit gamma/tau; TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau YP_004252376.1 COGs: COG1073 Hydrolase of the alpha/beta superfamily; KEGG: bvu:BVU_4178 alpha/beta family hydrolase; SPTR: Alpha/beta family hydrolase; PFAM: X-Pro dipeptidyl-peptidase (S15 family) YP_004252377.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005; KEGG: bvu:BVU_3088 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004252378.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005; KEGG: pdi:BDI_0978 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004252379.1 KEGG: cpi:Cpin_3210 hypothetical protein; SPTR: uncharacterized protein YP_004252380.1 COGs: COG3023 Negative regulator of beta-lactamase expression; InterPro IPR002502; KEGG: cts:Ctha_1046 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; SPTR: N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004252381.1 KEGG: pat:Patl_4200 hypothetical protein; SPTR: uncharacterized protein YP_004252382.1 KEGG: phe:Phep_2015 hypothetical protein; SPTR: uncharacterized protein YP_004252383.1 InterPro IPR010106; KEGG: bvu:BVU_1705 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP01784; TIGRFAM: conserved hypothetical protein ( transposase or invertase) YP_004252384.1 KEGG: cph:Cpha266_2258 hypothetical protein; SPTR: uncharacterized protein YP_004252385.1 KEGG: wri:WRi_007480 hypothetical protein; SPTR: uncharacterized protein YP_004252387.1 InterPro IPR005077; KEGG: coc:Coch_0349 hypothetical protein; PFAM: Peptidase C11, clostripain; SPTR: uncharacterized protein; PFAM: Clostripain family YP_004252388.1 KEGG: coc:Coch_0351 hypothetical protein; SPTR: uncharacterized protein YP_004252389.1 KEGG: coc:Coch_0352 hypothetical protein; SPTR: uncharacterized protein YP_004252390.1 KEGG: coc:Coch_0352 hypothetical protein; SPTR: uncharacterized protein YP_004252391.1 KEGG: pgn:PGN_0078 hypothetical protein; SPTR: uncharacterized protein YP_004252392.1 KEGG: bth:BT_2997 hypothetical protein; SPTR: uncharacterized protein YP_004252393.1 KEGG: bth:BT_2998 hypothetical protein; SPTR: uncharacterized protein YP_004252394.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bth:BT_2999 helicase IV; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase; PFAM: UvrD/REP helicase YP_004252395.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662: IPR012910: IPR000531; KEGG: pdi:BDI_0241 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004252396.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: cpi:Cpin_2882 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004252397.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR000792: IPR014284: IPR014327: IPR007627: IPR 013249; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252398.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: cpi:Cpin_3047 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004252399.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR000627: IPR012910: IPR000531; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Intradiol ring-cleavage dioxygenase, C-terminal; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004252400.1 InterPro IPR012944; KEGG: cpi:Cpin_1098 hypothetical protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004252401.1 KEGG: cpi:Cpin_1099 hypothetical protein; SPTR: uncharacterized protein YP_004252402.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004252403.1 KEGG: bvu:BVU_4011 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004252404.1 InterPro IPR003961: IPR000421; KEGG: phe:Phep_2296 hypothetical protein; PFAM: Fibronectin, type III; Coagulation factor 5/8 type, C-terminal; SPTR: uncharacterized protein; PFAM: F5/8 type C domain; Fibronectin type III domain YP_004252405.1 KEGG: phe:Phep_0503 hypothetical protein; SPTR: uncharacterized protein YP_004252406.1 InterPro IPR012944; KEGG: phe:Phep_2559 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; PFAM: SusD family YP_004252407.1 InterPro IPR012910: IPR000531; KEGG: bth:BT_4135 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004252408.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0304 FecR protein; PFAM: FecR protein; SPTR: Fe2+-dicitrate sensor, membrane component; PFAM: FecR protein YP_004252409.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR013249; KEGG: bth:BT_3037 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004252410.1 InterPro IPR019734: IPR001440: IPR013247; KEGG: pdi:BDI_0952 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SH3, type 3; SMART: Tetratricopeptide repeat; SPTR: BatE protein; PFAM: Tetratricopeptide repeat; Bacterial SH3 domain YP_004252411.1 KEGG: pdi:BDI_0951 hypothetical protein; SPTR: BatD protein YP_004252412.1 InterPro IPR019734: IPR001440; KEGG: phe:Phep_1483 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide TPR_2 repeat protein YP_004252413.1 InterPro IPR002035; KEGG: pdi:BDI_0949 hypothetical protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: BatB protein; PFAM: von Willebrand factor type A domain YP_004252414.1 COGs: COG1240 Mg-chelatase subunit ChlD; InterPro IPR002035; KEGG: pdi:BDI_0948 hypothetical protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: uncharacterized protein; PFAM: von Willebrand factor type A domain; Aerotolerance regulator N-terminal YP_004252415.1 KEGG: pdi:BDI_0947 hypothetical protein; SPTR: uncharacterized protein YP_004252416.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: bvu:BVU_3286 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: von Willebrand factor, type A; PFAM: Protein of unknown function DUF58 YP_004252417.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: pdi:BDI_0945 magnesium chelatase subunit I; PFAM: ATPase, AAA-3; SPTR: uncharacterized protein; PFAM: ATPase associated with various cellular activities (AAA) YP_004252418.1 KEGG: nve:NEMVE_v1g211651 hypothetical protein; SPTR: Predicted protein YP_004252420.1 InterPro IPR011129: IPR002059; KEGG: pdi:BDI_0811 cold shock protein, DNA-binding protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold shock protein; PFAM: 'Cold-shock' DNA-binding domain YP_004252421.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001: IPR001650: IPR011545; KEGG: bth:BT_1885 ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent RNA helicase RhlE; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_004252422.1 InterPro IPR000504; KEGG: bth:BT_1887 RNA-binding protein RbpA; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YP_004252423.1 COGs: COG2406 Protein distantly related to ferritins; InterPro IPR008331; KEGG: bth:BT_3823 hypothetical protein; PFAM: Ferritin/Dps protein; SPTR: Ferritin and Dps; PFAM: Ferritin-like domain YP_004252424.1 COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: psb:Psyr_3242 glycerophosphodiester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: uncharacterized protein; PFAM: Glycerophosphoryl diester phosphodiesterase YP_004252425.1 COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: pdi:BDI_0101 small heat shock protein; PFAM: Heat shock protein Hsp20; SPTR: uncharacterized protein; PFAM: Hsp20/alpha crystallin family YP_004252426.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: bvu:BVU_2875 transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; PFAM: Bacterial regulatory proteins, luxR family YP_004252427.1 InterPro IPR012312; KEGG: bth:BT_0519 hypothetical protein; PFAM: Haemerythrin/HHE cation-binding motif; SPTR: uncharacterized protein YP_004252428.1 COGs: COG0716 Flavodoxins; InterPro IPR010086: IPR008254; KEGG: bfs:BF2689 flavodoxin FldA; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Flavodoxin; TIGRFAM: Flavodoxin, long chain; PFAM: Flavodoxin; TIGRFAM: flavodoxin, long chain YP_004252429.1 InterPro IPR001818; KEGG: bth:BT_0171 hypothetical protein; PFAM: Peptidase M10, metallopeptidase; SPTR: uncharacterized protein; PFAM: Pregnancy-associated plasma protein-A YP_004252430.1 InterPro IPR000182; KEGG: bvu:BVU_3087 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family; PFAM: Acetyltransferase (GNAT) family YP_004252431.1 COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013216; KEGG: cat:CA2559_04785 hypothetical SAM-dependent methyltransferase; PFAM: Methyltransferase type 11; SPTR: Methyltransferase domain protein; PFAM: Methyltransferase domain YP_004252432.1 KEGG: pfh:PFHG_00217 conserved hypothetical protein YP_004252433.1 InterPro IPR001668; KEGG: pdi:BDI_2142 mobilization protein; PFAM: Plasmid recombination enzyme; SPTR: Plasmid recombination enzyme; PFAM: Plasmid recombination enzyme YP_004252434.1 KEGG: bvu:BVU_2465 DNA primase; SPTR: DNA primase; PFAM: CHC2 zinc finger YP_004252435.1 KEGG: bvu:BVU_2466 hypothetical protein; SPTR: uncharacterized protein YP_004252436.1 InterPro IPR010093; KEGG: zpr:ZPR_1827 excisionase; SPTR: excisionase; TIGRFAM: Excisionase/Xis, DNA-binding; TIGRFAM: DNA binding domain, excisionase YP_004252437.1 KEGG: bfr:BF2789 hypothetical protein; SPTR: uncharacterized protein YP_004252438.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004252439.1 KEGG: alv:Alvin_0334 hypothetical protein; SPTR: uncharacterized protein YP_004252440.1 KEGG: alv:Alvin_0333 hypothetical protein; SPTR: uncharacterized protein YP_004252441.1 COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477: IPR000442; KEGG: bth:BT_2602 maturase/reverse transcriptase; PFAM: RNA-directed DNA polymerase (reverse transcriptase); Intron maturase, type II; SPTR: uncharacterized protein; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Type II intron maturase YP_004252442.1 COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: bfs:BF3614 hypothetical protein; PFAM: Bile acid:sodium symporter; SPTR: uncharacterized protein; PFAM: Sodium Bile acid symporter family YP_004252443.1 COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583; KEGG: bth:BT_0555 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; PRIAM: Amidophosphoribosyltransferase; SPTR: uncharacterized protein; PFAM: Glutamine amidotransferases class-II YP_004252444.1 COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: bvu:BVU_4001 glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; SPTR: L-glutamine synthetase; PFAM: Protein of unknown function (DUF3214); Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal YP_004252445.1 KEGG: ssm:Spirs_0265 NAD+ synthetase; SPTR: Glutamine-dependent NAD(+) synthetase YP_004252446.1 KEGG: nvi:100120760 patched; SPTR: NADH-ubiquinone oxidoreductase chain 4 YP_004252447.1 COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR004511: IPR011798: IPR002500; KEGG: aps:CFPG_282 phosphoadenosine phosphosulfate reductase; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Phosphoadenylyl-sulfate reductase (thioredoxin); SPTR: Phosphoadenosine phosphosulfate reductase; TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; Phosphoadenosine phosphosulphate reductase CysH-type; PFAM: Phosphoadenosine phosphosulfate reductase; TIGRFAM: thioredoxin-dependent adenylylsulfate APS reductase; phosophoadenylyl-sulfate reductase (thioredoxin) YP_004252448.1 COGs: COG1117 ABC-type phosphate transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: aps:CFPG_272 ABC-type phosphate transporter ATP-binding component; PFAM: ABC transporter-like; PRIAM: Phosphate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Phosphate ABC transporter, ATP-binding protein PstB; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein YP_004252449.1 COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR000515; KEGG: aps:CFPG_277 ABC-type phosphate transporter permease component PstA; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Phosphate ABC transporter, permease PstA; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease PstA YP_004252450.1 COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR011864: IPR000515; KEGG: aps:CFPG_276 ABC-type phosphate transporter permease component PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Phosphate ABC transporter, permease PstC; TIGRFAM: Phosphate ABC transporter, permease PstC; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease PstC YP_004252451.1 COGs: COG0226 ABC-type phosphate transport system periplasmic component; KEGG: aps:CFPG_275 ABC-type phosphate transporter substrate-binding component; SPTR: ABC-type phosphate transporter substrate-binding component; PFAM: Bacterial extracellular solute-binding protein YP_004252452.1 COGs: COG1773 Rubredoxin; InterPro IPR004039; KEGG: bth:BT_2539 rubredoxin; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; PFAM: Rubredoxin YP_004252453.1 KEGG: bvu:BVU_1702 hypothetical protein; SPTR: uncharacterized protein YP_004252454.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: bvu:BVU_1701 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor YP_004252455.1 COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: mru:mru_1609 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: Multimeric flavodoxin WrbA; PFAM: NADPH-dependent FMN reductase YP_004252456.1 COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR010099: IPR001509: IPR013549; KEGG: bfr:BF3097 sugar nucleotide epimerase; PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; SPTR: uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777 YP_004252457.1 COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: pdi:BDI_1822 peptidase; PFAM: Peptidase M48; SPTR: Peptidase; PFAM: Peptidase M48 YP_004252458.1 COGs: COG0692 Uracil DNA glycosylase; HAMAP: Uracil-DNA glycosylase; InterPro IPR002043: IPR005122; KEGG: pdi:BDI_3716 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like; SPTR: Uracil-DNA glycosylase; TIGRFAM: Uracil-DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase YP_004252459.1 COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094: IPR004113; KEGG: phe:Phep_3343 D-lactate dehydrogenase (cytochrome); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: D-lactate dehydrogenase (Cytochrome); PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain YP_004252460.1 InterPro IPR011637; KEGG: lic:LIC10613 hypothetical protein; PFAM: DoxX; SPTR: uncharacterized protein; PFAM: DoxX YP_004252461.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: pdi:BDI_2973 MFS transport protein AraJ; PFAM: Major facilitator superfamily MFS-1; SPTR: transmembrane efflux protein; PFAM: Major Facilitator Superfamily YP_004252462.1 InterPro IPR004360; KEGG: fbc:FB2170_06390 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004252463.1 COGs: COG2388 acetyltransferase; KEGG: bvu:BVU_2090 hypothetical protein; SPTR: uncharacterized protein; PFAM: Acetyltransferase (GNAT) family YP_004252464.1 KEGG: pdi:BDI_0372 hypothetical protein; SPTR: uncharacterized protein YP_004252465.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843: IPR008334; KEGG: ssm:Spirs_1043 5'-nucleotidase; PFAM: 5'-Nucleotidase, C-terminal; Metallophosphoesterase; PRIAM: 5'-nucleotidase; SPTR: bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain YP_004252466.1 COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; KEGG: bth:BT_0585 hypothetical protein; SPTR: uncharacterized protein; PFAM: Flavin reductase like domain YP_004252467.1 COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; HAMAP: Camphor resistance CrcB protein; InterPro IPR003691; KEGG: bth:BT_4574 hypothetical protein; PFAM: Camphor resistance CrcB protein; SPTR: Protein crcB homolog; TIGRFAM: Camphor resistance CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein YP_004252468.1 InterPro IPR011701; KEGG: tin:Tint_1819 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Transporter, major facilitator family; PFAM: Sugar (and other) transporter YP_004252469.1 COGs: COG4413 Urea transporter; InterPro IPR017807: IPR004937; KEGG: yen:YE0958 UreA transporter; PFAM: Urea transporter; SPTR: urea transporter; TIGRFAM: Urea transporter, bacteria; PFAM: Urea transporter; TIGRFAM: urea transporter, Yersinia type YP_004252470.1 COGs: COG0829 Urease accessory protein UreH; HAMAP: Urease accessory protein UreD; InterPro IPR002669; KEGG: mau:Micau_4523 urease accessory protein UreD; PFAM: Urease accessory protein UreD; SPTR: Urease accessory protein ureD; PFAM: UreD urease accessory protein YP_004252471.1 COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; HAMAP: Urease accessory protein UreG; InterPro IPR004400: IPR003495; KEGG: lhk:LHK_01042 UreG; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; SPTR: Urease accessory protein ureG; TIGRFAM: Urease accessory protein UreG; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: urease accessory protein UreG YP_004252472.1 COGs: COG0830 Urease accessory protein UreF; HAMAP: Urease accessory protein UreF; InterPro IPR002639; KEGG: mdi:METDI1893 urease accessory protein UreF; PFAM: Urease accessory protein UreF; SPTR: Urease accessory protein ureF; PFAM: UreF YP_004252473.1 COGs: COG2371 Urease accessory protein UreE; InterPro IPR004029: IPR007864; KEGG: bme:BMEI0646 urease accessory protein UreE; PFAM: UreE urease accessory, N-terminal; UreE urease accessory, C-terminal; SPTR: Urease accessory protein uree; PFAM: UreE urease accessory protein, C-terminal domain; UreE urease accessory protein, N-terminal domain YP_004252474.1 COGs: COG0804 Urea amidohydrolase (urease) alpha subunit; HAMAP: Urease, alpha subunit; InterPro IPR005848: IPR011612: IPR006680; KEGG: lhk:LHK_01037 urease subunit alpha; PFAM: Amidohydrolase 1; Urease alpha-subunit, N-terminal; PRIAM: Urease; SPTR: Urease subunit alpha; TIGRFAM: Urease, alpha subunit; PFAM: Amidohydrolase; Urease alpha-subunit, N-terminal domain; TIGRFAM: urease, alpha subunit YP_004252475.1 COGs: COG0832 Urea amidohydrolase (urease) beta subunit; HAMAP: Urease, beta subunit; InterPro IPR002019; KEGG: mau:Micau_4528 urease subunit beta; PFAM: Urease, beta subunit; PRIAM: Urease; SPTR: Urease, beta subunit; TIGRFAM: Urease, beta subunit; PFAM: Urease beta subunit; TIGRFAM: urease, beta subunit YP_004252476.1 COGs: COG0831 Urea amidohydrolase (urease) gamma subunit; InterPro IPR002026; KEGG: pay:PAU_02381 urease subunit gamma; PFAM: Urease, alpha/gamma subunit; PRIAM: Urease; SPTR: Urease subunit gamma; TIGRFAM: Urease, alpha/gamma subunit; PFAM: Urease, gamma subunit; TIGRFAM: urease, gamma subunit YP_004252477.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910: IPR000531; KEGG: dma:DMR_27630 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004252478.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: aar:Acear_0786 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: Periplasmic binding protein; PFAM: Periplasmic binding protein YP_004252479.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: aar:Acear_0782 transport system permease; PFAM: Bacterial transport system permease; SPTR: Transport system permease; PFAM: FecCD transport family YP_004252480.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593: IPR003439; KEGG: afu:AF0430 iron (III) ABC transporter, ATP-binding protein (HemV-1); PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Iron (III) ABC transporter, ATP-binding protein (HemV-1); PFAM: ABC transporter YP_004252481.1 COGs: COG1720 conserved hypothetical protein; InterPro IPR001378: IPR003814; KEGG: aar:Acear_0784 formylmethanofuran dehydrogenase subunit E region; PFAM: Uncharacterised protein family UPF0066; Formylmethanofuran dehydrogenase, subunit E domain; SPTR: Formylmethanofuran dehydrogenase subunit E region; TIGRFAM: Uncharacterised protein family UPF0066; PFAM: Uncharacterised protein family UPF0066; FmdE, Molybdenum formylmethanofuran dehydrogenase operon; TIGRFAM: probable methyltransferase, YaeB/AF_0241 family YP_004252482.1 COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: bvu:BVU_3767 transposase; PFAM: Integrase, catalytic core; SPTR: ISPsy14, transposase; PFAM: Integrase core domain YP_004252483.1 COGs: COG1484 DNA replication protein; InterPro IPR003593: IPR002611; KEGG: nha:Nham_2786 IstB-like ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: Y4pL; PFAM: IstB-like ATP binding protein YP_004252484.1 KEGG: dap:Dacet_0764 hypothetical protein; SPTR: uncharacterized protein YP_004252485.1 COGs: COG3727 DNA G:T-mismatch repair endonuclease; InterPro IPR004603; KEGG: pdi:BDI_2024 very-short-patch-repair endonuclease; PFAM: DNA mismatch endonuclease vsr; SPTR: uncharacterized protein; TIGRFAM: DNA mismatch endonuclease vsr; PFAM: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease Vsr YP_004252486.1 COGs: COG1700 conserved hypothetical protein; InterPro IPR018633: IPR007505; KEGG: bfs:BF2918 hypothetical protein; PFAM: Domain of unknown function DUF2357; Protein of unknown function DUF524; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF2357); Protein of unknown function (DUF524) YP_004252487.1 KEGG: bfs:BF2917 restriction enzyme related protein; SPTR: restriction enzyme related protein; PFAM: Domain of unknown function (DUF3578) YP_004252488.1 KEGG: ehi:EHI_165230 hypothetical protein; SPTR: uncharacterized protein YP_004252489.1 InterPro IPR003594; KEGG: eci:UTI89_C4937 hypothetical protein; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004252490.1 COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: nmi:NMO_0153 type II DNA modification methylase; PFAM: DNA methylase, C-5 cytosine-specific; SPTR: Modification methylase HgiDII; TIGRFAM: DNA methylase, C-5 cytosine-specific; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm) YP_004252491.1 KEGG: pmz:HMPREF0659_A5494 lipoprotein; SPTR: lipoprotein YP_004252492.1 KEGG: pmz:HMPREF0659_A5493 lipoprotein; SPTR: lipoprotein YP_004252493.1 InterPro IPR012944; KEGG: pmz:HMPREF0659_A5492 SusD family protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004252494.1 KEGG: nve:NEMVE_v1g244660 hypothetical protein; SPTR: uncharacterized protein YP_004252495.1 InterPro IPR001387; KEGG: spf:SpyM51320 phage repressor protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: repressor protein; PFAM: Helix-turn-helix YP_004252498.1 KEGG: sbi:SORBI_08g017780 hypothetical protein; SPTR: uncharacterized protein Sb08g017780 YP_004252499.1 InterPro IPR001387; KEGG: bfr:BF0521 hypothetical protein; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein YP_004252501.1 InterPro IPR018873; KEGG: bfs:BF2399 hypothetical protein; PFAM: KilA-N, DNA-binding domain; SPTR: uncharacterized protein; PFAM: ORF6N domain YP_004252502.1 InterPro IPR018873; KEGG: bfs:BF2399 hypothetical protein; PFAM: KilA-N, DNA-binding domain; SPTR: uncharacterized protein; PFAM: ORF6N domain YP_004252505.1 InterPro IPR004919; KEGG: bcq:BCQ_3006 hypothetical protein; PFAM: Protein of unknown function DUF262; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1524); Protein of unknown function DUF262 YP_004252506.1 InterPro IPR004919; KEGG: bcq:BCQ_3005 SigF; PFAM: Protein of unknown function DUF262; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF262 YP_004252508.1 InterPro IPR004518; KEGG: phe:Phep_0928 MazG nucleotide pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: uncharacterized protein; PFAM: MazG nucleotide pyrophosphohydrolase domain YP_004252509.1 COGs: COG3410 conserved hypothetical protein; InterPro IPR019759; KEGG: gsu:GSU1358 hypothetical protein; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2075) YP_004252510.1 KEGG: pbe:PB405117.00.0 hypothetical protein; SPTR: uncharacterized protein YP_004252511.1 KEGG: ach:Achl_4603 hypothetical protein; SPTR: uncharacterized protein; PFAM: Nucleotidyltransferase domain YP_004252512.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: zpr:ZPR_0714 acetyltransferase related protein; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; PFAM: Acetyltransferase (GNAT) family YP_004252513.1 KEGG: ddc:Dd586_3044 amino acid adenylation domain protein; SPTR: solute binding protein of ABC transporter system YP_004252514.1 COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR021127; KEGG: pgn:PGN_1959 CRISPR-associated protein Cas2; SPTR: CRISPR-associated protein Cas2; TIGRFAM: CRISPR associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2 YP_004252515.1 COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729: IPR019858; KEGG: pgi:PG2014 CRISPR-associated Cas1 family protein; PFAM: CRISPR-associated protein Cas1; SPTR: CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1, HMARI/TNEAP subtype; CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype; CRISPR-associated endonuclease Cas1 YP_004252516.1 COGs: COG1468 RecB family exonuclease; InterPro IPR013343; KEGG: bfr:BF2545 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas4; PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4 YP_004252517.1 COGs: COG1203 helicase; InterProIPR011545: IPR001650: IPR006483: IPR006474: IPR 014001; KEGG: cno:NT01CX_0202 CRISPR-associated helicase Cas3; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; SPTR: CRISPR-associated helicase cas3; TIGRFAM: CRISPR-associated HD domain; Helicase Cas3, CRISPR-associated, core; PFAM: DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD YP_004252518.1 InterPro IPR013421: IPR013422; KEGG: sli:Slin_3867 CRISPR-associated protein Cas5, Hmari subtype; SPTR: CRISPR-associated protein Cas5, Hmari subtype; TIGRFAM: CRISPR-associated protein Cas5, HALMA; CRISPR-associated protein Cas5, N-terminal domain; TIGRFAM: CRISPR-associated protein Cas5, Hmari subtype; CRISPR-associated protein Cas5, N-terminal domain YP_004252519.1 InterPro IPR006482; KEGG: sli:Slin_3868 CRISPR-associated protein TM1801; PFAM: CRISPR-associated protein TM1801; SPTR: CRISPR-associated protein TM1801; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family YP_004252520.1 KEGG: sli:Slin_3869 hypothetical protein; SPTR: uncharacterized protein YP_004252521.1 COGs: COG1583 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR002743: IPR010156; KEGG: tma:TM1814 hypothetical protein; PFAM: Protein of unknown function DUF57; SPTR: CRISPR-associated protein Cas6; TIGRFAM: CRISPR-associated protein, Cas6; PFAM: CRISPR associated protein Cas6; TIGRFAM: CRISPR-associated endoribonuclease Cas6 YP_004252522.1 KEGG: cps:CPS_1799 hypothetical protein; SPTR: uncharacterized protein YP_004252523.1 COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: bfr:BF1614 hypothetical protein; PFAM: Amidohydrolase 1; SPTR: uncharacterized protein; PFAM: Amidohydrolase YP_004252524.1 KEGG: bfr:BF2739 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2874) YP_004252525.1 COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027: IPR004099; KEGG: bfr:BF1491 pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: pyridine nucleotide-disulfide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YP_004252526.1 COGs: COG3124 conserved hypothetical protein; InterPro IPR007431; KEGG: fps:FP0853 hypothetical protein; PFAM: Acyl carrier protein phosphodiesterase; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF479 YP_004252527.1 COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein; InterPro IPR002129: IPR010107; KEGG: pdi:BDI_0821 glutamate decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase; PRIAM: Glutamate decarboxylase; SPTR: Glutamate decarboxylase; TIGRFAM: Glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase conserved domain; TIGRFAM: glutamate decarboxylase YP_004252528.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: bth:BT_1226 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: Long-chain-fatty-acid-CoA ligase; PFAM: AMP-binding enzyme YP_004252529.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: bth:BT_1226 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: Long-chain-fatty-acid-CoA ligase; PFAM: AMP-binding enzyme YP_004252530.1 COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543: IPR018541; KEGG: bfr:BF1033 FtsK/SpoIIIE family cell division protein; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: FtsK/SpoIIIE family cell division protein; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family YP_004252531.1 InterPro IPR003675; KEGG: fps:FP1602 hypothetical protein; PFAM: Abortive infection protein; SPTR: uncharacterized protein; PFAM: CAAX amino terminal protease YP_004252532.1 COGs: COG3579 Aminopeptidase C; InterPro IPR004134; KEGG: bth:BT_1789 aminopeptidase C (bleomycin hydrolase); PFAM: Peptidase C1B, bleomycin hydrolase; SPTR: cysteine peptidase; PFAM: Peptidase C1-like family YP_004252533.1 COGs: COG0426 flavoprotein; InterPro IPR008254; KEGG: cts:Ctha_1418 beta-lactamase domain protein; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Beta-lactamase domain protein; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily YP_004252534.1 KEGG: pdi:BDI_3443 lipoprotein; SPTR: lipoprotein YP_004252535.1 KEGG: bth:BT_3680 hypothetical protein; SPTR: SusC homolog YP_004252536.1 KEGG: bfs:BF2997 lipoprotein; SPTR: lipoprotein YP_004252537.1 KEGG: bvu:BVU_0068 hypothetical protein; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004252538.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: pdi:BDI_2821 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004252539.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: dfe:Dfer_5351 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004252540.1 SPTR: uncharacterized protein YP_004252541.1 KEGG: pmz:HMPREF0659_A5827 lipoprotein; SPTR: uncharacterized protein YP_004252542.1 KEGG: bfs:BF0405 hypothetical protein; SPTR: uncharacterized protein YP_004252543.1 KEGG: bfr:BF3153 hypothetical protein; SPTR: uncharacterized protein; PFAM: O-Antigen ligase YP_004252544.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: vsp:VS_2652 response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004252545.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: bth:BT_0733 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004252546.1 COGs: COG0681 Signal peptidase I; InterPro IPR019759: IPR000223; KEGG: pdi:BDI_3439 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: uncharacterized protein; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_004252547.1 COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR001433: IPR019480: IPR013027: IPR006004; KEGG: bfs:BF0926 bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Oxidoreductase FAD/NAD(P)-binding; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; PRIAM: Glutamate synthase (NADPH); SPTR: uncharacterized protein; TIGRFAM: Glutamate synthase (NADPH), homotetrameric; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain; TIGRFAM: glutamate synthase (NADPH), homotetrameric YP_004252548.1 COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950; KEGG: bfr:BF4009 translation initiation factor SUI1; PFAM: Translation initiation factor SUI1; SPTR: uncharacterized protein; PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, , prokaryotic YP_004252549.1 InterPro IPR003838; KEGG: bvu:BVU_3170 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004252550.1 InterPro IPR003838; KEGG: bvu:BVU_3170 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004252551.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bvu:BVU_3173 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit YP_004252552.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bth:BT_0857 outer membrane protein TolC, PFAM: Outer membrane efflux protein; SPTR: outer membrane protein TolC; PFAM: Outer membrane efflux protein YP_004252553.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR002078: IPR002197: IPR003593; KEGG: bvu:BVU_3176 two-component system response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004252554.1 COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003594; KEGG: bvu:BVU_3177 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004252555.1 COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: pdi:BDI_3358 D-alanyl-D-alanine carboxypeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase; SPTR: uncharacterized protein; TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family YP_004252556.1 InterPro IPR003761; KEGG: bth:BT_3891 hypothetical protein; PFAM: Exonuclease VII, small subunit; SPTR: Exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; Influenza non-structural protein (NS2); TIGRFAM: exodeoxyribonuclease VII, small subunit YP_004252557.1 COGs: COG1570 Exonuclease VII large subunit; HAMAP: Exonuclease VII, large subunit; InterPro IPR020579: IPR003753; KEGG: pdi:BDI_2702 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; SPTR: Exodeoxyribonuclease 7 large subunit; TIGRFAM: Exonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit YP_004252558.1 COGs: COG2849 conserved hypothetical protein; InterPro IPR011652; KEGG: cat:CA2559_00975 hypothetical protein; PFAM: MORN variant; SPTR: uncharacterized protein; PFAM: MORN repeat variant YP_004252559.1 COGs: COG0218 GTPase; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; InterPro IPR002917: IPR019987; KEGG: cat:CA2559_06570 GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; SPTR: Probable GTP-binding protein engB; TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain YP_004252560.1 COGs: COG1322 conserved hypothetical protein; InterPro IPR003798; KEGG: pgn:PGN_0031 hypothetical protein; PFAM: RmuC; SPTR: uncharacterized protein; PFAM: RmuC family YP_004252561.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545: IPR001650: IPR014001; KEGG: cpi:Cpin_3093 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase YP_004252562.1 COGs: COG0206 Cell division GTPase; InterPro IPR003008: IPR018316: IPR000158; KEGG: phe:Phep_3322 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ YP_004252563.1 COGs: COG0206 Cell division GTPase; InterPro IPR003008: IPR018316: IPR000158; KEGG: phe:Phep_3322 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ YP_004252564.1 COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR003494: IPR020823; KEGG: slt:Slit_2714 cell division protein FtsA; PFAM: Cell division protein FtsA domain; SPTR: Cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA YP_004252565.1 KEGG: pdi:BDI_2485 cell division protein FtsQ; SPTR: Cell division protein FtsQ YP_004252566.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713: IPR013221: IPR004101: IPR005758; KEGG: bvu:BVU_1396 UDP-N-acetylmuramate--L-alanine ligase; PFAM: Mur ligase, C-terminal; Mur ligase, central; Mur ligase, N-terminal; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase YP_004252567.1 COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; HAMAP: N-acetylglucosaminyltransferase, MurG; InterPro IPR004276: IPR007235: IPR006009; KEGG: pdi:BDI_2487 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: N-acetylglucosaminyltransferase, MurG; PFAM: Glycosyltransferase 28 N-terminal domain; Glycosyltransferase 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_004252568.1 COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: cpi:Cpin_6977 cell cycle protein; PFAM: Cell cycle protein; SPTR: Cell cycle protein; PFAM: Cell cycle protein YP_004252569.1 COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR013221: IPR004101: IPR005762; KEGG: pdi:BDI_2489 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_004252570.1 COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; InterPro IPR018480: IPR018481: IPR003524; KEGG: phe:Phep_3329 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; PFAM: Glycosyl transferase 4; Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase YP_004252571.1 COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di aminopimelateligase; InterPro IPR000713: IPR013221: IPR004101: IPR005761; KEGG: pmz:HMPREF0659_A5214 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase; SPTR: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelateligase; PFAM: Mur ligase, catalytic domain; Mur ligase, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase YP_004252572.1 COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR001460: IPR005543; KEGG: cpi:Cpin_6973 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; PASTA; PRIAM: Peptidoglycan glycosyltransferase; SMART: PASTA; SPTR: Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; PASTA domain YP_004252573.1 KEGG: chu:CHU_2747 hypothetical protein; SPTR: uncharacterized protein YP_004252574.1 COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; InterPro IPR002903; KEGG: pdi:BDI_2494 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; SPTR: Ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; PFAM: MraW methylase; TIGRFAM: S-adenosyl-methyltransferase MraW YP_004252575.1 COGs: COG2001 conserved hypothetical protein; HAMAP: MraZ; InterPro IPR020603: IPR003444; KEGG: gfo:GFO_2776 MraZ protein; PFAM: MraZ domain; SPTR: Protein mraZ; PFAM: MraZ protein; TIGRFAM: mraZ protein YP_004252576.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: bfr:BF0656 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase YP_004252577.1 KEGG: bth:BT_2336 hypothetical protein; SPTR: DNA binding protein YP_004252578.1 KEGG: bfr:BF0654 hypothetical protein; SPTR: uncharacterized protein YP_004252579.1 KEGG: bfr:BF0653 hypothetical protein; SPTR: uncharacterized protein YP_004252580.1 InterPro IPR001647; KEGG: pgn:PGN_1921 probable transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004252581.1 KEGG: pgi:PG1869 hypothetical protein; SPTR: uncharacterized protein YP_004252582.1 COGs: COG0428 divalent heavy-metal cations transporter; HAMAP: Zinc transporter zupT; InterPro IPR003689; KEGG: dsa:Desal_2780 zinc transporter ZupT; PFAM: Zinc/iron permease; SPTR: Metal cation transporter, zinc (Zn2+)-iron (Fe2+) permease (ZIP) family protein; manually curated; PFAM: ZIP Zinc transporter YP_004252583.1 COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: pgi:PG1467 UbiE/COQ5 family methlytransferase; PFAM: Methyltransferase type 11; SPTR: Methlytransferase, UbiE/COQ5 family; PFAM: Methyltransferase domain YP_004252584.1 KEGG: dds:Ddes_1165 protein of unknown function DUF438; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1858) YP_004252585.1 KEGG: pdi:BDI_1732 non-specific DNA-binding protein; SPTR: DNA-binding protein YP_004252586.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: bfs:BF0578 TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug domain protein; PFAM: TonB-dependent Receptor Plug Domain YP_004252587.1 KEGG: bfs:BF0577 lipoprotein; SPTR: uncharacterized protein YP_004252588.1 InterPro IPR010721; KEGG: pgi:PG1466 hypothetical protein; PFAM: Protein of unknown function DUF1295; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1295) YP_004252589.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140: IPR003439: IPR003593; KEGG: emi:Emin_0880 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter YP_004252590.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140: IPR003439: IPR003593; KEGG: emi:Emin_0879 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter; ABC transporter transmembrane region YP_004252591.1 KEGG: bfs:BF2121 hypothetical protein; SPTR: uncharacterized protein YP_004252592.1 KEGG: bfr:BF0647 hypothetical protein; SPTR: uncharacterized protein; manually curated; PFAM: RteC protein YP_004252593.1 KEGG: bth:BT_2642 hypothetical protein; SPTR: uncharacterized protein YP_004252594.1 KEGG: pru:PRU_1548 hypothetical protein; SPTR: uncharacterized protein YP_004252595.1 InterPro IPR014942; KEGG: pru:PRU_1547 hypothetical protein; PFAM: Protein of unknown function DUF1814; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1814) YP_004252596.1 KEGG: bcc:BCc_173 YciC; SPTR: Cytochrome c oxidase subunit 1 YP_004252597.1 COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: bvu:BVU_2527 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein YP_004252598.1 InterPro IPR000866; KEGG: ttu:TERTU_2911 redoxin domain protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004252599.1 COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: lil:LB255 4-hydroxybutyrate CoA-transferase; PFAM: Acetyl-CoA hydrolase/transferase; SPTR: uncharacterized protein; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain YP_004252600.1 COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006261: IPR003607; KEGG: bvu:BVU_1408 dGTP triphosphohydrolase; PRIAM: dGTPase; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: dGTP triphosphohydrolase; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase YP_004252601.1 COGs: COG1610 conserved hypothetical protein; InterPro IPR019004; KEGG: bfs:BF0249 hypothetical protein; SPTR: uncharacterized protein; PFAM: Yqey-like protein YP_004252602.1 InterPro IPR006652; KEGG: pdi:BDI_2349 hypothetical protein; PFAM: Kelch repeat type 1; SPTR: exported protein YP_004252603.1 COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: pdi:BDI_1063 hypothetical protein; PFAM: Bacterial surface antigen (D15); SPTR: uncharacterized protein; PFAM: Surface antigen YP_004252604.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: bfs:BF3055 antiporter membrane protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: Multidrug efflux transporter, transmembrane MatE family; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004252605.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004252606.1 KEGG: phe:Phep_2710 TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; PFAM: Secretin and TonB N terminus short domain YP_004252607.1 COGs: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; InterPro IPR004839; KEGG: kol:Kole_0146 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Cystathionine beta-lyase; SPTR: Aminotransferase class I and II; manually curated; PFAM: Aminotransferase class I and II YP_004252608.1 InterPro IPR008258; KEGG: gfo:GFO_1070 membrane-bound lytic murein transglycosylase; PFAM: Lytic transglycosylase-like, catalytic; SPTR: membrane-bound lytic murein transglycosylase; PFAM: Transglycosylase SLT domain YP_004252609.1 COGs: COG0572 Uridine kinase; InterPro IPR003593; KEGG: bvu:BVU_1422 uridine kinase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: Phosphoribulokinase / Uridine kinase YP_004252610.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bvu:BVU_4078 periplasmic linker protein, multidrug resistance protein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004252611.1 COGs: COG1970 Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; InterPro IPR001185; KEGG: bvu:BVU_3586 large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel; SPTR: Large-conductance mechanosensitive channel; TIGRFAM: Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein YP_004252612.1 KEGG: fps:FP2138 hypothetical protein; SPTR: uncharacterized protein YP_004252613.1 COGs: COG2731 Beta-galactosidase beta subunit; InterPro IPR004375; KEGG: pmz:HMPREF0659_A6584 uncharacterized protein, YhcH/YjgK/YiaL family; PFAM: Conserved hypothetical protein CHP00022; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00022; PFAM: Domain of unknown function (DUF386); TIGRFAM: uncharacterized protein, YhcH/YjgK/YiaL family YP_004252614.1 COGs: COG1159 GTPase; HAMAP: GTP-binding protein Era; InterPro IPR002917: IPR004044: IPR005225: IPR005662; KEGG: bfs:BF3903 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; SPTR: GTP-binding protein era homolog; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain YP_004252615.1 COGs: COG1160 GTPase; HAMAP: GTP-binding, EngA; InterPro IPR002917: IPR005225: IPR016484; KEGG: bth:BT_3836 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain YP_004252616.1 InterPro IPR007359; KEGG: bvu:BVU_3891 hypothetical protein; PFAM: Positive regulator of sigma(E), RseC/MucC; SPTR: uncharacterized protein; PFAM: Positive regulator of sigma(E), RseC/MucC YP_004252617.1 COGs: COG2878 NADH:ubiquinone oxidoreductase subunit RnfB; InterPro IPR007202: IPR010207; KEGG: pdi:BDI_0516 ferredoxin; PFAM: Fe-S cluster; SPTR: uncharacterized protein; TIGRFAM: Electron transport complex, RnfB; PFAM: Fe-S cluster; 4Fe-4S binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit YP_004252618.1 COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC; InterPro IPR011538: IPR019554: IPR010208; KEGG: pdi:BDI_0515 electron transport complex, protein RnfC; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; SPTR: Electron transport complex, protein RnfC; TIGRFAM: Electron transport complex, RnfC; PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit YP_004252619.1 COGs: COG4658 NADH:ubiquinone oxidoreductase subunit RnfD; InterPro IPR004338: IPR011303; KEGG: bvu:BVU_3888 Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein RnfD; PFAM: NADH-quinone reductase NQR2/RnfD; SPTR: uncharacterized protein; TIGRFAM: Electron transport complex, RnfD; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit YP_004252620.1 COGs: COG4659 NADH:ubiquinone oxidoreductase subunit RnfG; InterPro IPR007329: IPR010209; KEGG: pdi:BDI_0513 electron transport complex, protein RnfG; PFAM: FMN-binding; SPTR: Electron transport complex, protein RnfG; TIGRFAM: Electron transport complex, RnfG; PFAM: FMN-binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit YP_004252621.1 COGs: COG4660 NADH:ubiquinone oxidoreductase subunit RnfE; InterPro IPR003667: IPR010968; KEGG: bfs:BF2615 electron transport complex RsxE subunit; PFAM: Electron transport complex, Rnf/Nqr; SPTR: Electron transport complex protein RnfE; TIGRFAM: Electron transport complex, RnfE; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit YP_004252622.1 COGs: COG4657 NADH:ubiquinone oxidoreductase subunit RnfA; InterPro IPR003667: IPR011293; KEGG: pdi:BDI_0511 electron transport complex protein RnfA; PFAM: Electron transport complex, Rnf/Nqr; SPTR: Electron transport complex protein RnfA; TIGRFAM: Electron transport complex, RnfA; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit YP_004252623.1 COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646: IPR006674: IPR006675: IPR003607; KEGG: bfs:BF3442 polyA polymerase; PFAM: Poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain; PRIAM: tRNA cytidylyltransferase; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: uncharacterized protein; TIGRFAM: HDIG; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG YP_004252624.1 COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: dfe:Dfer_3942 diacylglycerol kinase catalytic region; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain; SPTR: Diacylglycerol kinase catalytic domain-containing protein; PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: lipid kinase, YegS/Rv2252/BmrU family YP_004252625.1 COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732: IPR014026: IPR014027: IPR017476; KEGG: bfr:BF2297 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: UDP-glucose 6-dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004252626.1 COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890: IPR011625; KEGG: cpi:Cpin_0163 alpha-2-macroglobulin domain protein; PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; SPTR: Alpha-2-macroglobulin domain protein; PFAM: MG2 domain; Alpha-2-macroglobulin family; Alpha-2-macroglobulin family N-terminal region; Alpha-2-macroglobulin MG1 domain YP_004252627.1 COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: bfs:BF3380 hypothetical protein; PFAM: ATPase, AAA-4; SPTR: uncharacterized protein; PFAM: Divergent AAA domain YP_004252628.1 COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: ssm:Spirs_3949 multiple antibiotic resistance (MarC)-related protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: uncharacterized protein; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family YP_004252629.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: bth:BT_3551 zinc protease; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: uncharacterized protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16) YP_004252630.1 COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: bvu:BVU_3339 flavoredoxin; PFAM: Flavin reductase-like, FMN-binding; SPTR: Flavoredoxin; manually curated; PFAM: Flavin reductase like domain YP_004252631.1 COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814: IPR010164; KEGG: pdi:BDI_2673 acetylornithine aminotransferase, PFAM: Aminotransferase class-III; PRIAM: Ornithine aminotransferase; SPTR: Ornithine-oxo-acid transaminase; TIGRFAM: Ornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: ornithine aminotransferase YP_004252632.1 KEGG: bfs:BF2513 hypothetical protein; SPTR: uncharacterized protein; PFAM: Family of unknown function (DUF490) YP_004252633.1 COGs: COG0533 Metal-dependent protease with possible chaperone activity; HAMAP: O-sialoglycoprotein endopeptidase; InterPro IPR000905: IPR017861; KEGG: pdi:BDI_0532 DNA-binding/iron metalloprotein/AP endonuclease; PFAM: Peptidase M22, glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: O-sialoglycoprotein endopeptidase; TIGRFAM: glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; PFAM: Glycoprotease; TIGRFAM: glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family YP_004252634.1 COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: pgi:PG2171 D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: Glyoxylate reductase; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004252636.1 COGs: COG3016 Uncharacterized iron-regulated protein; InterPro IPR007314; KEGG: bfs:BF3448 hypothetical protein; PFAM: Protein of unknown function DUF399; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF399 YP_004252637.1 COGs: COG4744 conserved hypothetical protein; InterPro IPR018676; KEGG: bfs:BF2712 hypothetical protein; PFAM: Protein of unknown function DUF2149; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2149) YP_004252638.1 COGs: COG0811 Biopolymer transport protein; KEGG: coc:Coch_1080 integral membrane protein; SPTR: uncharacterized protein; PFAM: MotA/TolQ/ExbB proton channel family YP_004252639.1 KEGG: coc:Coch_1188 hypothetical protein; SPTR: uncharacterized protein YP_004252640.1 COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: coc:Coch_0753 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Cobaltochelatase; SPTR: uncharacterized protein; PFAM: CobN/Magnesium Chelatase YP_004252641.1 KEGG: dfe:Dfer_4647 hypothetical protein; SPTR: uncharacterized protein YP_004252642.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_7219 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004252643.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: bth:BT_0960 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004252644.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: bvu:BVU_2421 hypothetical protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: uncharacterized protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004252645.1 COGs: COG0499 S-adenosylhomocysteine hydrolase; InterPro IPR000086: IPR015878; KEGG: ste:STER_0336 NUDIX family hydrolase; PFAM: NUDIX hydrolase domain; S-adenosyl-L-homocysteine hydrolase, NAD binding; SPTR: uncharacterized protein; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; NUDIX domain YP_004252646.1 COGs: COG0717 Deoxycytidine deaminase; HAMAP: Deoxycytidine triphosphate deaminase; InterPro IPR011962; KEGG: chu:CHU_2002 deoxycytidine triphosphate deaminase; SPTR: Deoxycytidine triphosphate deaminase; TIGRFAM: Deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase YP_004252647.1 COGs: COG0237 Dephospho-CoA kinase; KEGG: deb:DehaBAV1_0391 dephospho-CoA kinase-like protein; SPTR: uncharacterized protein; manually curated YP_004252648.1 KEGG: clj:CLJU_c35030 transporter protein; SPTR: Dienelactone hydrolase-like protein YP_004252649.1 KEGG: bth:BT_1097 hypothetical protein; SPTR: uncharacterized protein YP_004252650.1 InterPro IPR002559; KEGG: bth:BT_1096 transposase; PFAM: Transposase, IS4-like; SPTR: Transposase YP_004252651.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: bfs:BF3444 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004252652.1 InterPro IPR012944; KEGG: bfs:BF3445 hypothetical protein; PFAM: RagB/SusD; SPTR: tetratricopeptide repeat-containing domain protein; PFAM: SusD family YP_004252653.1 KEGG: bfs:BF3446 lipoprotein; SPTR: uncharacterized protein YP_004252654.1 KEGG: dra:DR_B0059 transposase, SPTR: uncharacterized protein; PFAM: Transposase DDE domain YP_004252655.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: bfs:BF3447 peptidase; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; SPTR: Peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16) YP_004252656.1 COGs: COG3016 Uncharacterized iron-regulated protein; InterPro IPR007314; KEGG: bfs:BF3448 hypothetical protein; PFAM: Protein of unknown function DUF399; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF399 YP_004252657.1 KEGG: bvu:BVU_3119 integrase; SPTR: uncharacterized protein YP_004252658.1 InterPro IPR004013: IPR003141; KEGG: bth:BT_2529 hypothetical protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: uncharacterized protein; PFAM: PHP domain YP_004252659.1 COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; HAMAP: DNA polymerase IV; InterPro IPR001126; KEGG: bfr:BF1131 DNA damage-inducible protein; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: uncharacterized protein; PFAM: impB/mucB/samB family C-terminal; IMS family HHH motif; impB/mucB/samB family YP_004252660.1 COGs: COG1741 Pirin-related protein; InterPro IPR003829; KEGG: pdi:BDI_0091 hypothetical protein; PFAM: Pirin, N-terminal; SPTR: uncharacterized protein; PFAM: Pirin YP_004252661.1 COGs: COG0697 Permease of the drug/metabolite transporter (DMT) superfamily; InterPro IPR000620; KEGG: pdi:BDI_0262 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; PFAM: EamA-like transporter family YP_004252662.1 KEGG: bth:BT_0204 hypothetical protein; SPTR: Protein tyrosine/serine phosphatase; PFAM: Dual specificity phosphatase, catalytic domain YP_004252663.1 COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: pdi:BDI_1132 helicase; SPTR: uncharacterized protein; TIGRFAM: DNA helicase YP_004252664.1 KEGG: tva:TVAG_020030 eukaryotic release factor 1 YP_004252665.1 COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; InterPro IPR000440; KEGG: bvu:BVU_1759 NADH dehydrogenase I chain A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; SPTR: NADH-quinone oxidoreductase subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_004252666.1 COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; InterPro IPR006137: IPR006138; KEGG: bvu:BVU_1758 NADH dehydrogenase subunit B; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit B; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; manually curated; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit YP_004252667.1 COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; InterPro IPR001268: IPR001135; KEGG: bfs:BF0790 NADH-quinone oxidoreductase chain C/D; PFAM: NADH-quinone oxidoreductase, subunit D; NADH:ubiquinone oxidoreductase, 30kDa subunit; SPTR: NADH dehydrogenase I; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Respiratory-chain NADH dehydrogenase, 49 Kd subunit YP_004252668.1 COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); InterPro IPR001694; KEGG: bvu:BVU_1756 NADH dehydrogenase I chain H; PFAM: NADH:ubiquinone oxidoreductase, subunit 1; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit H; PFAM: NADH dehydrogenase YP_004252669.1 COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); KEGG: bfs:BF0788 NADH dehydrogenase I subunit I; SPTR: uncharacterized protein YP_004252670.1 COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: bvu:BVU_1754 NADH dehydrogenase I, chain J; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; SPTR: NADH dehydrogenase I, chain J; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004252671.1 COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; InterPro IPR001133; KEGG: bvu:BVU_1753 NADH dehydrogenase I chain K; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; SPTR: NADH-quinone oxidoreductase subunit K; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YP_004252672.1 COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516: IPR001750: IPR003945; KEGG: bfs:BF0785 NADH dehydrogenase chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: uncharacterized protein; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L YP_004252673.1 COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR001750: IPR010227; KEGG: bfs:BF0784 NADH-ubiquinone oxidoreductase subunit; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase I, M subunit; TIGRFAM: NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M YP_004252674.1 COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; InterPro IPR001750: IPR010096; KEGG: bfs:BF0783 NADH dehydrogenase chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit N; TIGRFAM: NADH-quinone oxidoreductase, chain N; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N YP_004252675.1 COGs: COG1893 Ketopantoate reductase; InterPro IPR013332: IPR013752: IPR003710; KEGG: pdi:BDI_1723 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; PRIAM: 2-dehydropantoate 2-reductase; SPTR: 2-dehydropantoate 2-reductase; TIGRFAM: Ketopantoate reductase ApbA/PanE; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase YP_004252676.1 COGs: COG0546 phosphatase; InterPro IPR005834: IPR006402: IPR006439; KEGG: bvu:BVU_1972 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; PRIAM: Phosphoglycolate phosphatase; SPTR: Phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; 2-phosphoglycolate phosphatase, prokaryotic YP_004252677.1 COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994: IPR002467; KEGG: bfs:BF2576 aminopeptidase; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Metallopeptidase M24; TIGRFAM: methionine aminopeptidase, type I YP_004252678.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: bvu:BVU_2744 hypothetical protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: uncharacterized protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004252679.1 COGs: COG2849 conserved hypothetical protein; InterPro IPR011652; KEGG: bth:BT_0761 hypothetical protein; PFAM: MORN variant; SPTR: uncharacterized protein; PFAM: MORN repeat variant YP_004252680.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: pdi:BDI_1779 multidrug efflux pump BexA; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: Multidrug efflux pump BexA; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004252681.1 KEGG: sli:Slin_5646 hypothetical protein; SPTR: uncharacterized protein YP_004252682.1 KEGG: hit:NTHI1667 hypothetical protein; SPTR: Conserved domain protein YP_004252683.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834: IPR006402: IPR006439; KEGG: pdi:BDI_1196 phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: uncharacterized protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_004252684.1 KEGG: gfo:GFO_1805 TonB-dependent outer membrane receptor; SPTR: YD repeat protein YP_004252685.1 KEGG: fjo:Fjoh_3289 hypothetical protein; SPTR: member of asn/thr-rich large protein YP_004252686.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: bfs:BF0935 zinc protease; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: uncharacterized protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16) YP_004252687.1 InterPro IPR013766; KEGG: pmz:HMPREF0659_A5495 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thiol:disulfide interchange protein; PFAM: Thioredoxin YP_004252688.1 KEGG: pmz:HMPREF0659_A5494 lipoprotein; SPTR: uncharacterized protein YP_004252689.1 KEGG: pmz:HMPREF0659_A5493 lipoprotein; SPTR: uncharacterized protein; PFAM: Fasciclin domain YP_004252690.1 InterPro IPR012944; KEGG: pmz:HMPREF0659_A5492 SusD family protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004252691.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: pmz:HMPREF0659_A5491 TonB-dependent receptor plug domain protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004252692.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: Sigma factor regulatory protein, FecR/PupR family; PFAM: FecR protein YP_004252693.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252694.1 KEGG: bfr:BF3279 hypothetical protein; SPTR: uncharacterized protein YP_004252695.1 COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: bfs:BF3117 acetyltransferase membrane protein; PFAM: Membrane bound O-acyl transferase, MBOAT; SPTR: Membrane-bound O-acyltransferase; PFAM: MBOAT family YP_004252696.1 KEGG: bfs:BF3116 acyl carrier protein; SPTR: Acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_004252697.1 COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: bfs:BF3115 non ribosome peptide synthase related, AMP-binding protein; PFAM: AMP-dependent synthetase/ligase; PRIAM: Phenylalanine racemase (ATP-hydrolyzing); SPTR: uncharacterized protein; PFAM: AMP-binding enzyme; TIGRFAM: amino acid adenylation domain YP_004252698.1 KEGG: bvu:BVU_0025 anti-sigma factor; SPTR: uncharacterized protein YP_004252699.1 KEGG: bth:BT_0225 hypothetical protein; SPTR: uncharacterized protein YP_004252700.1 KEGG: lgs:LEGAS_0823 ABC transporter permease EcsB YP_004252701.1 KEGG: bvu:BVU_2458 hypothetical protein; SPTR: uncharacterized protein YP_004252703.1 KEGG: bth:BT_0224 hypothetical protein; SPTR: lipoprotein YP_004252704.1 KEGG: coc:Coch_0351 hypothetical protein; SPTR: uncharacterized protein YP_004252705.1 KEGG: tau:Tola_2554 flavocytochrome c; SPTR: Redoxin YP_004252706.1 COGs: COG0224 F0F1-type ATP synthase gamma subunit; HAMAP: ATP synthase gamma chain; InterPro IPR000131; KEGG: bth:BT_0719 F0F1 ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit; SPTR: ATP synthase gamma chain; TIGRFAM: ATPase, F1 complex, gamma subunit; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit YP_004252707.1 COGs: COG0056 F0F1-type ATP synthase alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; InterPro IPR004100: IPR000194: IPR000793: IPR005294; KEGG: bfs:BF2234 F0F1 ATP synthase subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SPTR: ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit YP_004252708.1 COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); HAMAP: ATPase, F1 complex, OSCP/delta subunit; InterPro IPR000711; KEGG: pru:PRU_1193 ATP synthase F1 subunit delta; PFAM: ATPase, F1 complex, OSCP/delta subunit; SPTR: ATP synthase F1, delta subunit; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit YP_004252709.1 COGs: COG0711 F0F1-type ATP synthase subunit b; HAMAP: ATP synthase subunit b; InterPro IPR002146: IPR005864; KEGG: pdi:BDI_0266 ATP synthase B subunit; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; SPTR: ATP synthase subunit b; TIGRFAM: ATPase, F0 complex, subunit B, bacterial; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b YP_004252710.1 HAMAP: ATPase, F0 complex, subunit C; InterPro IPR002379: IPR005953: IPR000454; KEGG: pdi:BDI_0267 ATP synthase C subunit; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: uncharacterized protein; TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c YP_004252711.1 COGs: COG0356 F0F1-type ATP synthase subunit a; HAMAP: ATP synthase subunit a; InterPro IPR000568; KEGG: bvu:BVU_2996 ATP synthase A subunit; PFAM: ATPase, F0 complex, subunit A; SPTR: ATP synthase subunit a; TIGRFAM: ATPase, F0 complex, subunit A; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) YP_004252712.1 COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); InterPro IPR020546; KEGG: dfe:Dfer_3764 H+transporting two-sector ATPase delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; SPTR: H+transporting two-sector ATPase delta/epsilon subunit; PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain YP_004252713.1 COGs: COG0055 F0F1-type ATP synthase beta subunit; HAMAP: ATPase, F1 complex, beta subunit; InterProIPR004100: IPR000194: IPR000793: IPR005722: IPR 003593; KEGG: bfs:BF2227 F0F1 ATP synthase subunit beta; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP synthase F1, beta subunit; TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit YP_004252714.1 KEGG: tan:TA12270 hypothetical protein; SPTR: uncharacterized protein YP_004252715.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545: IPR001650: IPR014001; KEGG: pdi:BDI_1397 ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: uncharacterized protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_004252716.1 KEGG: bfr:BF3776 hypothetical protein; SPTR: uncharacterized protein YP_004252717.1 KEGG: bfr:BF3776 hypothetical protein; SPTR: uncharacterized protein YP_004252718.1 KEGG: bth:BT_3742 hypothetical protein; SPTR: uncharacterized protein YP_004252719.1 COGs: COG2066 Glutaminase; HAMAP: Glutaminase, core; InterPro IPR015868; KEGG: bgf:BC1003_5603 glutaminase, core; PFAM: Glutaminase, core; PRIAM: Glutaminase; SPTR: Glutaminase; TIGRFAM: Glutaminase, core; PFAM: Glutaminase; TIGRFAM: glutaminase A YP_004252720.1 KEGG: bth:BT_0779 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2874) YP_004252721.1 COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076; KEGG: chu:CHU_3199 type II general secretion pathway (GSP) F protein; PFAM: Type II secretion system F domain; SPTR: Type II general secretion pathway F protein; PFAM: Bacterial type II secretion system protein F domain YP_004252722.1 InterPro IPR012902; KEGG: ath:AT3G18000 XPL1 (XIPOTL 1); methyltransferase/ phosphoethanolamine N-methyltransferase; SPTR: uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004252723.1 KEGG: rme:Rmet_4620 membrane fusion protein of efflux pump HlyD family V; SPTR: membrane fusion protein of efflux pump HlyD family v YP_004252724.1 KEGG: phe:Phep_1109 hypothetical protein; SPTR: uncharacterized protein YP_004252725.1 KEGG: pdi:BDI_3712 ATPase; SPTR: uncharacterized protein; PFAM: Archaeal ATPase YP_004252726.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: ere:EUBREC_0502 hypothetical protein; SPTR: uncharacterized protein YP_004252728.1 KEGG: bfs:BF1751 hypothetical protein; SPTR: uncharacterized protein YP_004252729.1 COGs: COG3209 Rhs family protein; InterPro IPR006530; KEGG: bth:BT_2927 cell wall-associated protein precursor; PFAM: YD repeat; SPTR: uncharacterized protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: RHS Repeat; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies) YP_004252730.1 InterPro IPR006530; KEGG: bth:BT_2928 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: YD repeat YP_004252731.1 KEGG: nhl:Nhal_1696 copper-translocating P-type ATPase; SPTR: uncharacterized protein YP_004252732.1 KEGG: chu:CHU_3192 hypothetical protein; SPTR: uncharacterized protein YP_004252733.1 KEGG: ccs:CCNA_00136 AmpG protein; SPTR: AmpG protein YP_004252734.1 KEGG: bfo:BRAFLDRAFT_66399 hypothetical protein; SPTR: uncharacterized protein YP_004252735.1 COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR005644: IPR004846; KEGG: phe:Phep_1103 type II and III secretion system protein; PFAM: Type II/III secretion system; NolW-like; SPTR: Type II and III secretion system protein; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein YP_004252736.1 COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482: IPR003593; KEGG: phe:Phep_1102 type II secretion system protein E; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: Type II secretion system protein E; PFAM: Type II/IV secretion system protein YP_004252737.1 KEGG: bcj:BCAM1011 acetyltransferase; SPTR: Type 4 prepilin family protein specific leader peptidase YP_004252738.1 InterPro IPR012902; KEGG: chu:CHU_3198 type II general secretion pathway (GSP) G protein; SPTR: Possible type II general secretion pathway (GSP) G protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_004252739.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867; KEGG: aau:AAur_3023 KDP operon transcriptional regulatory; PFAM: Signal transduction response regulator, C-terminal; SPTR: KDP operon transcriptional regulatory; PFAM: Transcriptional regulatory protein, C terminal YP_004252741.1 KEGG: bcm:Bcenmc03_2963 hexapaptide repeat-containing transferase; SPTR: Acetyl transferase YP_004252742.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0304 FecR protein; PFAM: FecR protein; SPTR: FecR protein; PFAM: FecR protein YP_004252743.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: bvu:BVU_1982 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004252744.1 InterPro IPR011935; KEGG: zpr:ZPR_2072 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02231; TIGRFAM: conserved hypothetical protein YP_004252745.1 COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099: IPR006158: IPR006098: IPR006159; KEGG: bfs:BF3592 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; PRIAM: Methylmalonyl-CoA mutase; SPTR: uncharacterized protein; TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain YP_004252746.1 COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099; KEGG: bfs:BF3593 methylmalonyl-CoA mutase small subunit; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; PRIAM: Methylmalonyl-CoA mutase; SPTR: uncharacterized protein; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase, heterodimeric type, beta chain YP_004252747.1 KEGG: sti:Sthe_0514 ATP-dependent protease La; SPTR: ATP-dependent protease La YP_004252748.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: pdi:BDI_3853 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004252749.1 COGs: COG2015 Alkyl sulfatase and related hydrolase; KEGG: pdi:BDI_3852 metallo-beta-lactamase superfamily protein; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily; SCP-2 sterol transfer family YP_004252750.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834: IPR006402; KEGG: pdi:BDI_0146 beta-phosphoglucomutase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_004252751.1 KEGG: coc:Coch_0485 major facilitator superfamily MFS_1; SPTR: uncharacterized protein YP_004252752.1 COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520: IPR006055; KEGG: bvu:BVU_3037 exonuclease/DNA polymerase III epsilon C; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: exonuclease/DNA polymerase III epsilon c; PFAM: Exonuclease YP_004252753.1 COGs: COG1288 membrane protein; InterPro IPR018385; KEGG: bfs:BF1046 C4-dicarboxylate anaerobic carrier; PFAM: C4-dicarboxylate anaerobic carrier-like; SPTR: C4-dicarboxylate anaerobic carrier; PFAM: C4-dicarboxylate anaerobic carrier YP_004252754.1 COGs: COG2171 Tetrahydrodipicolinate N-succinyltransferase; InterPro IPR001451; KEGG: fba:FIC_00837 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; PRIAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; SPTR: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_004252755.1 InterPro IPR000683: IPR010190; KEGG: bfr:BF3690 meso-diaminopimelate D-dehydrogenase; PFAM: Oxidoreductase, N-terminal; SPTR: Meso-diaminopimelate D-dehydrogenase; TIGRFAM: Diaminopimelate dehydrogenase; PFAM: Oxidoreductase, NAD-binding Rossmann fold; TIGRFAM: diaminopimelate dehydrogenase YP_004252756.1 InterPro IPR013740; KEGG: bvu:BVU_2549 thiol-disulfide isomerase and thioredoxin; PFAM: Redoxin; SPTR: Thioredoxin family protein; PFAM: Redoxin YP_004252757.1 KEGG: pmz:HMPREF0659_A6550 lipoprotein; SPTR: uncharacterized protein YP_004252758.1 KEGG: pmz:HMPREF0659_A6549 lipoprotein; SPTR: lipoprotein YP_004252759.1 KEGG: pmz:HMPREF0659_A6548 lipoprotein; SPTR: uncharacterized protein; PFAM: SusD family YP_004252760.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: pmz:HMPREF0659_A6547 TonB-dependent receptor plug domain protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004252761.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004252762.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252763.1 COGs: COG0009 translation factor (SUA5); InterPro IPR006070: IPR004388; KEGG: bvu:BVU_0056 translation factor; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_004252764.1 COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: bfs:BF3497 glycoprotease exported protein; PFAM: Peptidase M22, glycoprotease; SPTR: uncharacterized protein; TIGRFAM: universal protein YeaZ; PFAM: Glycoprotease; TIGRFAM: universal bacterial protein YeaZ YP_004252765.1 KEGG: bss:BSUW23_19360 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3298) YP_004252766.1 InterPro IPR013740; KEGG: fjo:Fjoh_1249 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: Thioredoxin family protein; PFAM: Redoxin YP_004252767.1 KEGG: cpi:Cpin_5146 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004252768.1 InterPro IPR012910; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: Possible outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_004252769.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bth:BT_3270 anti-sigma factor; PFAM: FecR protein; SPTR: Anti-sigma factor; PFAM: FecR protein YP_004252770.1 KEGG: pdi:BDI_1821 hypothetical protein; SPTR: uncharacterized protein YP_004252771.1 KEGG: pdi:BDI_2678 hypothetical protein; SPTR: Predicted protein YP_004252772.1 KEGG: pgn:PGN_0184 minor component FimD; SPTR: Predicted protein YP_004252773.1 KEGG: pdi:BDI_1260 hypothetical protein; SPTR: uncharacterized protein YP_004252774.1 InterPro IPR014941; KEGG: pdi:BDI_3518 lipoprotein; PFAM: Protein of unknown function DUF1812; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1812) YP_004252775.1 KEGG: dma:DMR_44850 chemotaxis protein CheX; SPTR: uncharacterized protein YP_004252776.1 KEGG: bfr:BF2125 hypothetical protein; SPTR: immunoreactive antigen; PFAM: OmpA family YP_004252777.1 KEGG: bfs:BF1973 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3575) YP_004252778.1 KEGG: bth:BT_2246 hypothetical protein; SPTR: uncharacterized protein YP_004252779.1 COGs: COG3055 conserved hypothetical protein; InterPro IPR006652; KEGG: sli:Slin_1887 kelch repeat-containing protein; PFAM: Kelch repeat type 1; SPTR: Kelch repeat protein (3 repeats) YP_004252780.1 COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: pdi:BDI_1953 diacylglycerol kinase; PFAM: Diacylglycerol kinase, prokaryotic; SPTR: uncharacterized protein; PFAM: Prokaryotic diacylglycerol kinase YP_004252781.1 InterPro IPR000326; KEGG: pdi:BDI_1954 phosphoesterase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Phosphoesterase; PFAM: PAP2 superfamily YP_004252782.1 KEGG: bvu:BVU_2727 hypothetical protein; SPTR: uncharacterized protein YP_004252783.1 COGs: COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; InterPro IPR001264: IPR001460: IPR009647: IPR011815; KEGG: fps:FP2234 membrane carboxypeptidase/penicillin-binding protein PbpC; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal; PRIAM: Peptidoglycan glycosyltransferase; SPTR: uncharacterized protein; TIGRFAM: Penicillin-binding protein 1C; PFAM: Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C YP_004252784.1 KEGG: bfr:BF3626 hypothetical protein; SPTR: uncharacterized protein YP_004252785.1 KEGG: bfr:BF3627 hypothetical protein; SPTR: uncharacterized protein YP_004252786.1 KEGG: bfr:BF3628 hypothetical protein; SPTR: uncharacterized protein YP_004252787.1 KEGG: bfs:BF3431 hypothetical protein; SPTR: uncharacterized protein YP_004252788.1 KEGG: bfs:BF3430 lipoprotein; SPTR: uncharacterized protein YP_004252789.1 KEGG: bfs:BF3433 hypothetical protein; SPTR: uncharacterized protein YP_004252790.1 KEGG: bfs:BF3434 hypothetical protein; SPTR: uncharacterized protein YP_004252791.1 COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: bvu:BVU_1473 protein-tyrosine-phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: uncharacterized protein; PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_004252792.1 COGs: COG0552 Signal recognition particle GTPase; InterPro IPR013822: IPR000897: IPR004390: IPR003593; KEGG: bfs:BF2508 recognition particle-docking protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_004252793.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004252794.1 KEGG: cpi:Cpin_3290 hypothetical protein; SPTR: uncharacterized protein YP_004252795.1 KEGG: cpi:Cpin_3289 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004252796.1 InterPro IPR012910; KEGG: cpi:Cpin_3288 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004252797.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0955 FecR protein; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004252798.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: phe:Phep_0253 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252799.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004252800.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: bvu:BVU_2067 transmembrane protein; PFAM: Uncharacterised protein family UPF0118; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF20 YP_004252801.1 KEGG: pdi:BDI_3315 hypothetical protein; SPTR: uncharacterized protein YP_004252802.1 COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086; KEGG: pdi:BDI_1667 hypothetical protein; PFAM: NUDIX hydrolase domain; SPTR: uncharacterized protein; PFAM: NUDIX domain YP_004252803.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR009042: IPR007627: IPR007624: IPR007630: IPR 014284; KEGG: bvu:BVU_2738 RNA polymerase sigma factor RpoD; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004252804.1 COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478: IPR001254: IPR011782; KEGG: chu:CHU_0052 serine protease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: HtrA protein; TIGRFAM: Peptidase S1C, Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family YP_004252805.1 COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: cpi:Cpin_4694 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase YP_004252806.1 COGs: COG3187 Heat shock protein; InterPro IPR005184; KEGG: cli:Clim_0508 protein of unknown function DUF306 MetA and HslJ; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR: Heat shock protein; PFAM: META domain YP_004252807.1 COGs: COG1726 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrA; InterPro IPR008703; KEGG: pdi:BDI_1125 Na(+)-translocating NADH-quinone reductase subunit A; PFAM: Na-translocating NADH-quinone reductase subunit A; SPTR: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; TIGRFAM: Na-translocating NADH-quinone reductase subunit A; PFAM: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); NQRA C-terminal domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit YP_004252808.1 COGs: COG1805 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrB; InterPro IPR004338: IPR010966; KEGG: pdi:BDI_1124 Na(+)-translocating NADH-quinone reductase subunit B; PFAM: NADH-quinone reductase NQR2/RnfD; SPTR: uncharacterized protein; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit YP_004252809.1 COGs: COG2869 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrC; InterPro IPR007329: IPR010204; KEGG: pdi:BDI_1123 Na(+)-translocating NADH-quinone reductase subunit C; PFAM: FMN-binding; SPTR: Na(+)-translocating NADH-quinone reductase subunit C; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; PFAM: FMN-binding domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit YP_004252810.1 COGs: COG1347 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrD; InterPro IPR003667: IPR011292; KEGG: pgi:PG2179 Na(+)-translocating NADH-quinone reductase subunit D; PFAM: Electron transport complex, Rnf/Nqr; SPTR: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit YP_004252811.1 COGs: COG2209 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrE; InterPro IPR003667: IPR010967; KEGG: gfo:GFO_0404 Na(+)-translocating NADH-quinone reductase subunit E; PFAM: Electron transport complex, Rnf/Nqr; SPTR: Na-translocating NADH-quinone reductase subunit E; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit YP_004252812.1 COGs: COG2871 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrF; InterPro IPR001041: IPR008333: IPR001433: IPR010205; KEGG: bfs:BF2070 Na(+)-translocating NADH-quinone reductase subunit F; PFAM: Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; Oxidoreductase, FAD-binding domain; PRIAM: Ferredoxin--NAD(+) reductase; SPTR: uncharacterized protein; TIGRFAM: NADH-quinone reductase, Na(+)-translocating, F subunit; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit YP_004252813.1 InterPro IPR000866; KEGG: zpr:ZPR_1740 AhpC/TSA family protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: AhpC/TSA family YP_004252814.1 KEGG: xca:xccb100_0549 hypothetical protein; SPTR: Thiol:disulfide interchange protein dsbD; PFAM: Disulphide bond corrector protein DsbC YP_004252815.1 KEGG: bvu:BVU_2221 hypothetical protein; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: SusD family YP_004252816.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: bvu:BVU_2220 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004252817.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0327 FecR protein; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein YP_004252818.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252819.1 KEGG: sli:Slin_6205 hypothetical protein; SPTR: uncharacterized protein YP_004252820.1 COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR001085; KEGG: pgn:PGN_0038 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: Serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase YP_004252821.1 COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: pdi:BDI_2285 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: uncharacterized protein; PFAM: Beta-lactamase YP_004252822.1 COGs: COG0669 Phosphopantetheine adenylyltransferase; HAMAP: Coenzyme A biosynthesis protein; InterPro IPR001980: IPR004820: IPR004821; KEGG: phe:Phep_1466 pantetheine-phosphate adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain YP_004252823.1 COGs: COG5016 Pyruvate/oxaloacetate carboxyltransferase; InterPro IPR000891: IPR003379: IPR000089; KEGG: pdi:BDI_1670 carboxylase, PFAM: Biotin/lipoyl attachment; Carboxylase, conserved domain; Pyruvate carboxyltransferase; PRIAM: Pyruvate carboxylase; SPTR: uncharacterized protein; PFAM: HMGL-like; Biotin-requiring enzyme; Conserved carboxylase domain YP_004252824.1 KEGG: lla:L37002 terminase large subunit; SPTR: Prophage pi3 protein 26, terminase large subunit YP_004252825.1 COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; InterPro IPR006153: IPR006037; KEGG: pdi:BDI_3333 potassium/proton antiporter; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; SPTR: Na+/H+ exchanger; PFAM: TrkA-C domain; Sodium/hydrogen exchanger family YP_004252826.1 COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: pdi:BDI_0538 lipoprotein protein; PFAM: NLP/P60; SPTR: uncharacterized protein; PFAM: NlpC/P60 family YP_004252827.1 InterPro IPR013766; KEGG: bvu:BVU_2369 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; PFAM: Thioredoxin YP_004252828.1 KEGG: asa:ASA_0515 general secretion pathway protein A; SPTR: Two-component response regulator YP_004252829.1 KEGG: mbu:Mbur_1643 cell surface protein; SPTR: uncharacterized protein YP_004252830.1 KEGG: rop:ROP_54440 hypothetical protein; SPTR: uncharacterized protein YP_004252831.1 KEGG: coc:Coch_1337 hypothetical protein; SPTR: uncharacterized protein YP_004252832.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: sli:Slin_3590 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004252833.1 COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766; KEGG: bfs:BF3015 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_004252834.1 InterPro IPR002482: IPR018392; KEGG: pdi:BDI_0817 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: uncharacterized protein; PFAM: LysM domain YP_004252835.1 COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: aas:Aasi_1368 hypothetical protein; PFAM: PASTA; SMART: PASTA; SPTR: uncharacterized protein; PFAM: PASTA domain YP_004252836.1 COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR002942: IPR006145: IPR006225; KEGG: pdi:BDI_2676 ribosomal large subunit pseudouridine synthase D; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family YP_004252837.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183: IPR005730; KEGG: pdi:BDI_0940 carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: uncharacterized protein; TIGRFAM: Carboxynorspermidine decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; TIGRFAM: carboxynorspermidine decarboxylase YP_004252838.1 COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: bfs:BF1182 hypothetical protein; PFAM: Saccharopine dehydrogenase / Homospermidine synthase; SPTR: uncharacterized protein; PFAM: Saccharopine dehydrogenase YP_004252839.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bfr:BF0682 outer membrane protein TolC; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004252840.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: bth:BT_2252 multidrug efflux membrane fusion protein; PFAM: Acriflavin resistance protein; SPTR: Multidrug efflux membrane fusion protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004252841.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bfs:BF0608 HlyD family efflux transporter component; PFAM: Secretion protein HlyD; SPTR: RND family efflux transporter, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004252842.1 COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523; KEGG: pph:Ppha_1185 Mg2 transporter protein CorA family protein; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Mg2 transporter protein CorA family protein; PFAM: CorA-like Mg2+ transporter protein YP_004252843.1 InterPro IPR005135; KEGG: bvu:BVU_2373 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: uncharacterized protein; PFAM: Endonuclease/Exonuclease/phosphatase YP_004252844.1 InterPro IPR003779: IPR004675; KEGG: cpi:Cpin_1032 alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; SPTR: Alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: alkylhydroperoxidase AhpD family core domain YP_004252845.1 COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR001478: IPR008915: IPR004387; KEGG: cpi:Cpin_2050 peptidase M50; PFAM: Peptidase M50; SMART: PDZ/DHR/GLGF; SPTR: Peptidase M50; TIGRFAM: Peptidase M50, membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; TIGRFAM: RIP metalloprotease RseP YP_004252846.1 COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821: IPR013512: IPR013644; KEGG: bfs:BF3492 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004252847.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: zpr:ZPR_0040 M23 family peptidase; PFAM: Peptidase M23; SPTR: membrane peptidase; PFAM: Peptidase M23 YP_004252848.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: bfs:BF0722 transmembrane transport protein; PFAM: Mechanosensitive ion channel MscS; SPTR: transmembrane transport protein; PFAM: Mechanosensitive ion channel YP_004252849.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: bth:BT_4320 zinc protease; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; SPTR: Peptidase, M16 family; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16) YP_004252850.1 COGs: COG0738 Fucose permease; InterPro IPR011701: IPR005964; KEGG: bfs:BF0927 sugar transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: sugar transporter; TIGRFAM: Bacterial glucose/galactose transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter YP_004252851.1 KEGG: bth:BT_3335 hypothetical protein; SPTR: uncharacterized protein YP_004252852.1 KEGG: cpi:Cpin_7058 hypothetical protein; SPTR: uncharacterized protein YP_004252853.1 KEGG: bth:BT_0542 hypothetical protein; SPTR: tRNA/rRNA methyltransferase, SpoU-like protein YP_004252854.1 COGs: COG4108 Peptide chain release factor RF-3; InterPro IPR000795: IPR004161: IPR004548: IPR005225; KEGG: pdi:BDI_2510 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; SPTR: Peptide chain release factor 3; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; peptide chain release factor 3 YP_004252855.1 COGs: COG5496 thioesterase; InterPro IPR006683; KEGG: ctc:CTC00206 dihydrolipoamide acyltransferase; PFAM: Thioesterase superfamily; SPTR: Dihydrolipoamide acyltransferase; PFAM: Thioesterase superfamily YP_004252856.1 COGs: COG0784 FOG: CheY-like receiver; InterPro IPR001789; KEGG: bfs:BF2047 two-component system sensor kinase/response regulator fusion protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system sensor histidine kinase; PFAM: Response regulator receiver domain YP_004252857.1 COGs: COG0556 Helicase subunit of the DNA excision repair complex; HAMAP: Excinuclease ABC, B subunit; InterProIPR004807: IPR014001: IPR001650: IPR006935: IPR 001943; KEGG: pdi:BDI_0282 excinuclease ABC subunit B; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: UvrABC system protein B; TIGRFAM: Excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit YP_004252858.1 COGs: COG1785 Alkaline phosphatase; InterPro IPR001952; KEGG: bfs:BF0425 alkaline phosphatase; PFAM: Alkaline phosphatase; PRIAM: Alkaline phosphatase; SMART: Alkaline phosphatase; SPTR: alkaline phosphatase; PFAM: Alkaline phosphatase YP_004252859.1 COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR002933: IPR010168; KEGG: sli:Slin_3253 amidohydrolase; PFAM: Peptidase M20; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: Amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: Peptidase M20/M25/M40; TIGRFAM: amidohydrolase YP_004252860.1 KEGG: cfa:476582 coiled-coil domain containing 66; SPTR: uncharacterized protein YP_004252861.1 KEGG: cpi:Cpin_1424 hypothetical protein; SPTR: lipoprotein YP_004252862.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004252863.1 KEGG: dse:Dsec_GM14264 GM14264 gene product from transcript GM14264-RA; SPTR: uncharacterized protein YP_004252864.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004252865.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: Outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_004252866.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0327 FecR protein; PFAM: FecR protein; SPTR: FecR protein; PFAM: FecR protein YP_004252867.1 KEGG: nda:Ndas_2872 peptidase M64, IgA; SPTR: uncharacterized protein; PFAM: IgA Peptidase M64 YP_004252868.1 KEGG: bth:BT_2822 hypothetical protein; SPTR: uncharacterized protein YP_004252869.1 KEGG: pmz:HMPREF0659_A5372 hypothetical protein; SPTR: uncharacterized protein YP_004252870.1 KEGG: swd:Swoo_1801 Ig domain-containing protein; SPTR: lysis protein; PFAM: Outer membrane protein Omp28 YP_004252871.1 InterPro IPR000866; KEGG: pgn:PGN_0120 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004252872.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252873.1 COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: phe:Phep_3684 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004252874.1 KEGG: chu:CHU_1641 hypothetical protein; SPTR: uncharacterized protein YP_004252875.1 COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR000644: IPR001347: IPR004800; KEGG: cpi:Cpin_0776 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core; PRIAM: Arabinose-5-phosphate isomerase; SMART: Cystathionine beta-synthase, core; SPTR: Carbohydrate isomerase, KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein YP_004252876.1 COGs: COG0514 Superfamily II DNA helicase; InterProIPR014001: IPR001650: IPR002121: IPR011545: IPR 018982: IPR006293: IPR018329; KEGG: bvu:BVU_0442 ATP-dependent DNA helicase RecQ; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: uncharacterized protein; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family YP_004252877.1 KEGG: pha:PSHAa1551 phage-related minor tail protein; SPTR: phage-related minor tail protein YP_004252878.1 KEGG: sli:Slin_5553 hypothetical protein; SPTR: uncharacterized protein YP_004252879.1 KEGG: pdi:BDI_0414 hypothetical protein; SPTR: uncharacterized protein; PFAM: Nucleoside recognition YP_004252880.1 COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR011128: IPR006109; KEGG: bvu:BVU_4108 glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; PRIAM: Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); SPTR: Glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YP_004252881.1 COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase, class II; InterPro IPR002313: IPR004365: IPR004364; KEGG: bvu:BVU_4107 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial YP_004252882.1 InterPro IPR013740; KEGG: bvu:BVU_2222 thiol-disulfide oxidoreductase; PFAM: Redoxin; SPTR: Thioredoxin family protein; PFAM: Redoxin YP_004252883.1 InterPro IPR019734; KEGG: cpi:Cpin_2946 hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: uncharacterized protein; PFAM: SusD family YP_004252884.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR014284; KEGG: bth:BT_1053 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004252885.1 KEGG: dsy:DSY3857 hypothetical protein; SPTR: uncharacterized protein; PFAM: The GLUG motif YP_004252886.1 KEGG: bfr:BF3838 hypothetical protein; SPTR: lipoprotein YP_004252887.1 KEGG: bfr:BF3838 hypothetical protein; SPTR: lipoprotein YP_004252888.1 KEGG: swo:Swol_1078 Ig-like domain-containing protein; SPTR: lipoprotein; PFAM: The GLUG motif YP_004252889.1 KEGG: swo:Swol_1076 Ig-like domain-containing protein; SPTR: The GLUG motif protein family protein; PFAM: The GLUG motif YP_004252890.1 KEGG: bfr:BF3847 hypothetical protein; SPTR: uncharacterized protein YP_004252891.1 KEGG: bfr:BF3848 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004252892.1 KEGG: bfr:BF3849 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3575) YP_004252893.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005; KEGG: pjd:Pjdr2_5257 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: uncharacterized protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004252894.1 KEGG: mmu:100042430 predicted gene 3840; SPTR: Predicted protein YP_004252895.1 KEGG: bth:BT_3151 hypothetical protein; SPTR: Transcriptional regulator, AraC family YP_004252896.1 KEGG: pdi:BDI_0736 hypothetical protein; SPTR: uncharacterized protein YP_004252897.1 COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: pdi:BDI_0735 hypothetical protein; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: Fic protein; PFAM: Fic/DOC family YP_004252898.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: bth:BT_p548234 DNA resolvase; PFAM: Resolvase, N-terminal; SPTR: DNA resolvase; PFAM: Resolvase, N terminal domain; Helix-turn-helix domain of resolvase YP_004252899.1 COGs: COG3943 Virulence protein; KEGG: bth:BT_p548233 DNA-binding protein; SPTR: Toxin-antitoxin system, toxin component, Fic family YP_004252900.1 KEGG: bth:BT_p548232 hypothetical protein; SPTR: uncharacterized protein YP_004252901.1 COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: pdi:BDI_0731 chromosome-partitioning ATPase; SPTR: Cellulose synthase operon protein YhjQ; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_004252902.1 KEGG: pdi:BDI_0730 hypothetical protein; SPTR: uncharacterized protein YP_004252903.1 KEGG: bth:BT_p548229 hypothetical protein; SPTR: uncharacterized protein YP_004252904.1 KEGG: bth:BT_p548228 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004252905.1 KEGG: pdi:BDI_0727 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3575) YP_004252906.1 InterPro IPR000792; KEGG: sat:SYN_01430 GerE transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family YP_004252907.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bth:BT_2012 ATPase; SPTR: uncharacterized protein YP_004252908.1 InterPro IPR001387; KEGG: bfr:BF2945 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; PFAM: Helix-turn-helix YP_004252909.1 KEGG: aps:CFPG_P1-7 replication protein A; SPTR: RepA protein YP_004252910.1 KEGG: pdi:BDI_0723 hypothetical protein; SPTR: uncharacterized protein YP_004252911.1 InterPro IPR021533; KEGG: pdi:BDI_0722 hypothetical protein; PFAM: Domain of unknown function DUF2874; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2874) YP_004252912.1 KEGG: vvi:100244517 hypothetical protein LOC100244517 YP_004252913.1 COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR001667: IPR003156: IPR004610; KEGG: pdi:BDI_1746 single-stranded-DNA-specific exonuclease RecJ; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ YP_004252914.1 COGs: COG0353 Recombinational DNA repair protein (RecF pathway); HAMAP: RecR protein; InterPro IPR000093: IPR006154: IPR015967: IPR006171; KEGG: pgi:PG1255 recombination protein RecR; SMART: Toprim domain, subgroup; SPTR: Recombination protein RecR; TIGRFAM: RecR protein; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR YP_004252915.1 KEGG: bth:BT_3069 disulphide-isomerase; SPTR: disulphide-isomerase; PFAM: Thioredoxin; Protein of unknown function, DUF255 YP_004252916.1 COGs: COG3274 conserved hypothetical protein; KEGG: pdi:BDI_1082 hypothetical protein; SPTR: membrane protein; PFAM: Acyltransferase YP_004252917.1 KEGG: bfr:BF0702 hypothetical protein; SPTR: uncharacterized protein YP_004252918.1 InterPro IPR012944; KEGG: cpi:Cpin_3049 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004252919.1 InterPro IPR012910: IPR000531; KEGG: bth:BT_1552 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004252920.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_1501 FecR protein; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004252921.1 InterPro IPR018631: IPR012547; KEGG: bth:BT_0374 hypothetical protein; PFAM: AAA-ATPase-like; Protein of unknown function DUF1703; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase YP_004252922.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR000792: IPR007627: IPR013249: IPR014284; KEGG: phe:Phep_0443 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252923.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004252924.1 InterPro IPR013766; KEGG: bth:BT_3069 disulphide-isomerase; PFAM: Thioredoxin domain; SPTR: uncharacterized protein; PFAM: Thioredoxin YP_004252925.1 InterPro IPR000866; KEGG: fjo:Fjoh_2011 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin; PFAM: AhpC/TSA family YP_004252926.1 COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR013766; KEGG: bth:BT_3069 disulphide-isomerase; PFAM: Thioredoxin domain; SPTR: uncharacterized protein; PFAM: Thioredoxin; Protein of unknown function, DUF255 YP_004252927.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004252928.1 KEGG: mbr:MONBRDRAFT_38754 hypothetical protein; SPTR: uncharacterized protein YP_004252929.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004252930.1 InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004252931.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004252933.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: dfe:Dfer_2829 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252934.1 COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: cbk:CLL_A1000 amino acid carrier protein AlsT; PFAM: Sodium:alanine symporter; SPTR: Sodium/alanine symporter family protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein YP_004252935.1 COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006175: IPR006056; KEGG: pgi:PG1847 endoribonuclease L-PSP, PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP YP_004252936.1 KEGG: bfs:BF3044 hypothetical protein; SPTR: uncharacterized protein YP_004252937.1 KEGG: bvu:BVU_1330 hypothetical protein; SPTR: uncharacterized protein YP_004252938.1 COGs: COG1592 Rubrerythrin; InterPro IPR003251; KEGG: pdi:BDI_3032 rubrerythrin; PFAM: Rubrerythrin; SPTR: Rubrerythrin; PFAM: Rubrerythrin YP_004252939.1 InterPro IPR011701; KEGG: pmz:HMPREF0659_A6993 transporter, major facilitator family protein; PFAM: Major facilitator superfamily MFS-1; SPTR: Transporter, major facilitator family protein; PFAM: Major Facilitator Superfamily YP_004252940.1 COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: pdi:BDI_1603 dioxygenase; PFAM: 2-nitropropane dioxygenase, NPD; SPTR: uncharacterized protein; PFAM: 2-nitropropane dioxygenase YP_004252941.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: sli:Slin_0019 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16) YP_004252942.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR007863; KEGG: bfr:BF2229 zinc protease; PFAM: Peptidase M16, C-terminal; SPTR: uncharacterized protein; PFAM: Peptidase M16 inactive domain YP_004252943.1 KEGG: fjo:Fjoh_4759 hypothetical protein; SPTR: uncharacterized protein YP_004252944.1 KEGG: bfs:BF1950 hypothetical protein; SPTR: uncharacterized protein YP_004252945.1 COGs: COG2249 NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: cac:CA_C0018 NADPH-quinone reductase YabF family; PFAM: Flavodoxin-like fold; SPTR: NAD(P)H oxidoreductase; PFAM: Flavodoxin-like fold YP_004252946.1 COGs: COG4866 conserved hypothetical protein; KEGG: pdi:BDI_0643 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2156) YP_004252947.1 COGs: COG4552 acetyltransferase involved in intracellular survival and related acetyltransferase; KEGG: bth:BT_3688 acetyltransferase; SPTR: uncharacterized protein YP_004252948.1 KEGG: bfr:BF3584 hypothetical protein; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004252949.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: phe:Phep_0188 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004252951.1 KEGG: shi:Shel_11830 hypothetical protein; SPTR: uncharacterized protein YP_004252952.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: bth:BT_3112 hypothetical protein; SPTR: uncharacterized protein; PFAM: BAAT / Acyl-CoA thioester hydrolase C terminal YP_004252953.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR000792: IPR007627: IPR013249: IPR014284: IPR 014327; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004252954.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: fjo:Fjoh_3803 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Probable anti-sigma factor; PFAM: FecR protein YP_004252955.1 COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: pdi:BDI_0229 thiol:disulfide interchange protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin; PFAM: AhpC/TSA family YP_004252956.1 KEGG: spu:593010 hypothetical LOC593010; SPTR: uncharacterized protein YP_004252957.1 InterPro IPR012910; KEGG: bth:BT_3271 hypothetical protein; PFAM: TonB-dependent receptor, plug; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004252958.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004252959.1 KEGG: spu:763492 similar to fibropellin Ia; SPTR: uncharacterized protein YP_004252960.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004252961.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: pmz:HMPREF0659_A7003 peptidase families S8 and S53; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Protease; PFAM: Subtilase YP_004252962.1 KEGG: bth:BT_1088 hypothetical protein; SPTR: uncharacterized protein YP_004252963.1 InterPro IPR000866; KEGG: cpi:Cpin_1834 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: AhpC/TSA family YP_004252964.1 COGs: COG2985 permease; InterPro IPR006512: IPR006037; KEGG: bfr:BF1818 hypothetical protein; PFAM: YidE/YbjL duplication; Regulator of K+ conductance, C-terminal; SPTR: uncharacterized protein; TIGRFAM: YidE/YbjL duplication; PFAM: Predicted Permease Membrane Region; TrkA-C domain; TIGRFAM: AspT/YidE/YbjL antiporter duplication domain YP_004252965.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: pdi:BDI_0371 metalloendopeptidase; PFAM: Peptidase M23; SPTR: uncharacterized protein; PFAM: Peptidase M23 YP_004252966.1 COGs: COG0295 Cytidine deaminase; InterPro IPR002125; KEGG: pdi:BDI_2098 cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: Cytidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric YP_004252967.1 COGs: COG1705 Muramidase (flagellum-specific); InterPro IPR013338: IPR002482: IPR002901: IPR018392; KEGG: bfs:BF1428 hemagglutinin; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Peptidoglycan-binding lysin domain; SMART: Lysozyme domain, subfamily 2; Peptidoglycan-binding Lysin subgroup; SPTR: uncharacterized protein; manually curated; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; LysM domain YP_004252968.1 KEGG: sli:Slin_6626 hypothetical protein; SPTR: uncharacterized protein YP_004252969.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: pru:PRU_0191 group 2 family glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Group 2 glycosyl transferase; PFAM: Glycosyl transferase 2 YP_004252970.1 COGs: COG3663 G:T/U mismatch-specific DNA glycosylase; KEGG: bfs:BF3386 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uracil DNA glycosylase superfamily YP_004252971.1 COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR011701; KEGG: pdi:BDI_0465 permease; PFAM: Major facilitator superfamily MFS-1; SPTR: Permease; PFAM: Major Facilitator Superfamily YP_004252972.1 COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012001: IPR012000: IPR011766; KEGG: pdi:BDI_0987 pyruvate dehydrogenase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; PRIAM: Pyruvate dehydrogenase (cytochrome); SPTR: Pyruvate dehydrogenase; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004252973.1 COGs: COG0855 Polyphosphate kinase; InterPro IPR003414; KEGG: bfr:BF2645 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1 YP_004252974.1 COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: bth:BT_0540 exopolyphosphatase; PFAM: Ppx/GppA phosphatase; SPTR: exopolyphosphatase; PFAM: Ppx/GppA phosphatase YP_004252975.1 COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: pdi:BDI_0657 acetyl-CoA carboxylase, carboxyltransferase component; PFAM: Carboxyl transferase; PRIAM: Propionyl-CoA carboxylase; SPTR: Acetyl-CoA carboxylase, carboxyltransferase component; PFAM: Carboxyl transferase domain YP_004252976.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: pdi:BDI_0658 pyruvate/oxaloacetate carboxyltransferase; PFAM: Biotin/lipoyl attachment; SPTR: uncharacterized protein; PFAM: Biotin-requiring enzyme YP_004252977.1 COGs: COG4152 ABC-type uncharacterized transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: dfe:Dfer_4965 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC-type uncharacterized transport system, ATPase component; PFAM: ABC transporter YP_004252978.1 COGs: COG1668 ABC-type Na+ efflux pump permease component; KEGG: dfe:Dfer_4966 ABC transporter, permease, SPTR: ABC transporter, permease YP_004252979.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: bfs:BF1821 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004252980.1 KEGG: bfr:BF1746 hypothetical protein; SPTR: uncharacterized protein YP_004252981.1 KEGG: bfs:BF1823 transmembrane protein; SPTR: transmembrane protein YP_004252982.1 KEGG: mvn:Mevan_1579 hypothetical protein; SPTR: uncharacterized protein YP_004252983.1 KEGG: bvu:BVU_3205 hypothetical protein; SPTR: uncharacterized protein YP_004252984.1 KEGG: bfs:BF4284 hypothetical protein; SPTR: uncharacterized protein YP_004252985.1 COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: pgn:PGN_0610 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033563; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1015) YP_004252986.1 COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: bvu:BVU_3242 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: Phosphoglycerate dehydrogenase; SPTR: uncharacterized protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004252987.1 COGs: COG1932 Phosphoserine aminotransferase; HAMAP: Phosphoserine aminotransferase; InterPro IPR000192; KEGG: bfs:BF2072 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Phosphoserine transaminase; SPTR: Phosphoserine aminotransferase; PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase YP_004252988.1 COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); InterPro IPR006222: IPR013977: IPR006223; KEGG: bfs:BF1290 glycine cleavage system aminomethyltransferase T; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; PRIAM: Aminomethyltransferase; SPTR: Aminomethyltransferase; TIGRFAM: Glycine cleavage system T protein; PFAM: Glycine cleavage T-protein C-terminal barrel domain; Aminomethyltransferase folate-binding domain; TIGRFAM: glycine cleavage system T protein YP_004252990.1 InterPro IPR002645; KEGG: geo:Geob_3040 anti-sigma-factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_004252991.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: bth:BT_0928 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004252992.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: bth:BT_0927 two-component system sensor histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004252993.1 KEGG: bth:BT_0923 periplasmic protein; SPTR: periplasmic protein; PFAM: Protein of unknown function (DUF2874) YP_004252994.1 KEGG: bfs:BF2756 lipoprotein; SPTR: lipoprotein; PFAM: Protein of unknown function (DUF2874) YP_004252995.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200: IPR000150: IPR006379; KEGG: pdi:BDI_1769 hypothetical protein; PFAM: HAD superfamily hydrolase-like, type 3; SPTR: uncharacterized protein; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB YP_004252996.1 COGs: COG0469 Pyruvate kinase; InterPro IPR015793: IPR015794: IPR001697; KEGG: pdi:BDI_3302 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase YP_004252997.1 COGs: COG0757 3-dehydroquinate dehydratase II; HAMAP: Dehydroquinase, class II; InterPro IPR001874; KEGG: coc:Coch_0067 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase, class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase, type II; TIGRFAM: Dehydroquinase, class II; PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II YP_004252998.1 COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107: IPR002104: IPR011932; KEGG: pdi:BDI_3300 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: uncharacterized protein; TIGRFAM: Tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; TIGRFAM: tyrosine recombinase XerD YP_004252999.1 KEGG: tca:660021 similar to enhancer of mRNA-decapping protein 4; SPTR: Liver stage antigen 3 YP_004253000.1 COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022: IPR002627; KEGG: bfs:BF0938 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA) YP_004253001.1 KEGG: pic:PICST_87338 hypothetical protein; SPTR: uncharacterized protein YP_004253002.1 COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: rbi:RB2501_16124 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family; PFAM: Acetyltransferase (GNAT) family YP_004253003.1 KEGG: gfo:GFO_2929 hypothetical protein; SPTR: uncharacterized protein YP_004253004.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004253005.1 KEGG: bmy:Bm1_45530 UDP-galactose transporter family protein; SPTR: uncharacterized protein YP_004253006.1 InterPro IPR001387; KEGG: bvu:BVU_3759 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix; PFAM: Helix-turn-helix YP_004253007.1 COGs: COG3550 conserved hypothetical protein; InterPro IPR012894: IPR012893; KEGG: bvu:BVU_3758 capsule biosynthesis enzyme-like protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR: Uncharacterized protein related to capsule biosynthesis enzymes; PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; TIGRFAM: HipA N-terminal domain YP_004253008.1 InterPro IPR004843; KEGG: bth:BT_4526 hypothetical protein; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase YP_004253009.1 COGs: COG4186 phosphoesterase or phosphohydrolase; InterPro IPR004843; KEGG: bth:BT_4528 hypothetical protein; PFAM: Metallophosphoesterase; SPTR: Predicted phosphoesterase or phosphohydrolase; PFAM: Calcineurin-like phosphoesterase YP_004253010.1 COGs: COG1672 ATPase (AAA+ superfamily); InterPro IPR004256; KEGG: taf:THA_601 ATP-binding protein; PFAM: Protein of unknown function DUF234, DEXX-box ATPase C-terminal; SPTR: uncharacterized protein; PFAM: Archaeal ATPase; Archaea bacterial proteins of unknown function YP_004253011.1 KEGG: bfr:BF1149 hypothetical protein; SPTR: uncharacterized protein YP_004253012.1 InterPro IPR001387; KEGG: pdi:BDI_2133 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Conserved domain protein; PFAM: Helix-turn-helix YP_004253013.1 InterPro IPR018579; KEGG: pmz:HMPREF0659_A7331 LlaJI restriction endonuclease; PFAM: Restriction endonuclease, type II, LlaJI; SPTR: uncharacterized protein; manually curated; PFAM: LlaJI restriction endonuclease YP_004253014.1 KEGG: cpi:Cpin_0105 SMC domain protein; SPTR: uncharacterized protein YP_004253015.1 KEGG: rsh:Rsph17029_3199 hypothetical protein; SPTR: uncharacterized protein YP_004253016.1 COGs: COG0433 ATPase; KEGG: nhl:Nhal_3375 protein of unknown function DUF87; SPTR: Nucleotidyltransferase; manually curated; PFAM: Domain of unknown function DUF87 YP_004253017.1 COGs: COG3727 DNA G:T-mismatch repair endonuclease; InterPro IPR004603; KEGG: pru:PRU_0358 DNA mismatch endonuclease Vsr family protein; PFAM: DNA mismatch endonuclease vsr; SPTR: uncharacterized protein; TIGRFAM: DNA mismatch endonuclease vsr; PFAM: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease Vsr YP_004253018.1 KEGG: bth:BT_4741 hypothetical protein; SPTR: uncharacterized protein YP_004253019.1 COGs: COG3943 Virulence protein; KEGG: bfs:BF1121 DNA-binding protein; SPTR: DNA-binding protein YP_004253020.1 COGs: COG3943 Virulence protein; KEGG: bfs:BF1126 hypothetical protein; SPTR: uncharacterized protein YP_004253021.1 KEGG: bth:BT_4546 hypothetical protein; SPTR: uncharacterized protein YP_004253022.1 InterPro IPR010093; KEGG: bth:BT_4547 excisionase; SPTR: DNA binding domain, excisionase; TIGRFAM: Excisionase/Xis, DNA-binding; TIGRFAM: DNA binding domain, excisionase YP_004253023.1 KEGG: bth:BT_4548 protein involved in transposition; SPTR: uncharacterized protein YP_004253024.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: bth:BT_4549 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; PFAM: Phage integrase YP_004253025.1 InterPro IPR010093; KEGG: bth:BT_4550 transposase; SPTR: uncharacterized protein; TIGRFAM: Excisionase/Xis, DNA-binding; TIGRFAM: DNA binding domain, excisionase YP_004253026.1 COGs: COG0486 GTPase; HAMAP: tRNA modification GTPase TrmE; InterPro IPR004520: IPR018948: IPR002917: IPR005225; KEGG: pdi:BDI_2122 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; SPTR: tRNA modification GTPase mnmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE YP_004253027.1 KEGG: bfs:BF1345 hypothetical protein; SPTR: uncharacterized protein YP_004253028.1 COGs: COG3033 Tryptophanase; InterPro IPR001597; KEGG: pgn:PGN_0880 tryptophanase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Tryptophanase; SPTR: Beta-eliminating lyase; PFAM: Beta-eliminating lyase YP_004253029.1 KEGG: dfe:Dfer_5061 hypothetical protein; SPTR: uncharacterized protein YP_004253030.1 COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001: IPR001650: IPR011545; KEGG: dfe:Dfer_4097 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_004253032.1 KEGG: pgn:PGN_0349 upregulated in stationary phase A; SPTR: Upregulated in stationary phase A YP_004253033.1 COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148: IPR005900; KEGG: pdi:BDI_0648 6-phosphogluconolactonase; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; PRIAM: 6-phosphogluconolactonase; SPTR: uncharacterized protein; TIGRFAM: 6-phosphogluconolactonase; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase YP_004253034.1 COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR002478: IPR004398; KEGG: bfs:BF0947 hypothetical protein; PFAM: Conserved hypothetical protein CHP00095; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: uncharacterized protein; PFAM: S-adenosylmethionine-dependent methyltransferase YP_004253035.1 COGs: COG1109 Phosphomannomutase; InterPro IPR005844: IPR005845: IPR005843; KEGG: bfs:BF3668 phosphoglucomutase/phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, C-terminal; PRIAM: Phosphoglucosamine mutase; SPTR: uncharacterized protein; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_004253036.1 COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); HAMAP: Glycine cleavage H-protein; InterPro IPR002930: IPR017453; KEGG: bth:BT_2519 glycine cleavage system protein H; PFAM: Glycine cleavage H-protein; SPTR: Glycine cleavage system H protein; TIGRFAM: Glycine cleavage H-protein, subgroup; PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein YP_004253037.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: pdi:BDI_3924 BexA, cation effux pump; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: uncharacterized protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004253038.1 KEGG: pdi:BDI_3423 hypothetical protein; SPTR: exported protein YP_004253039.1 COGs: COG0078 Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; InterPro IPR002292: IPR006132: IPR006131; KEGG: vpa:VP2653 ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; PRIAM: Ornithine carbamoyltransferase; SPTR: Ornithine carbamoyltransferase; TIGRFAM: Ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase YP_004253040.1 COGs: COG0549 Carbamate kinase; InterPro IPR001048; KEGG: taf:THA_1104 carbamate kinase-like carbamoyl phosphate synthetase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Carbamate kinase; SPTR: Carbamate kinase; PFAM: Amino acid kinase; TIGRFAM: carbamate kinase YP_004253041.1 InterPro IPR007060; KEGG: bvu:BVU_2250 septum formation initiator-related protein; PFAM: Septum formation initiator; SPTR: septum formation initiator-related protein; PFAM: Septum formation initiator YP_004253042.1 COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); HAMAP: Resolvase, holliday junction-type, YqgF-like; InterPro IPR005227: IPR006641; KEGG: pdi:BDI_0655 Holliday junction resolvase-like protein; PFAM: Resolvase, holliday junction-type, YqgF-like; SMART: Resolvase, RNase H-like fold; SPTR: Holliday junction resolvase; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF YP_004253043.1 COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: pgn:PGN_2068 peptide deformylase; PFAM: Formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase; TIGRFAM: Formylmethionine deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase YP_004253044.1 COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: fbc:FB2170_08469 competence protein; PFAM: ComEC/Rec2-related protein; SPTR: Competence protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein YP_004253045.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148: IPR006037; KEGG: bfs:BF0795 potassium transporter peripheral membrane component; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: uncharacterized protein; PFAM: TrkA-N domain; TrkA-C domain YP_004253046.1 COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: bth:BT_4097 trk system K+ uptake protein TrkH; PFAM: Cation transporter; SPTR: Trk system potassium uptake protein TrkH; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family YP_004253047.1 COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: bvu:BVU_3250 hypothetical protein; PFAM: MgtC/SapB transporter; SPTR: uncharacterized protein; PFAM: MgtC family YP_004253048.1 COGs: COG0009 translation factor (SUA5); InterPro IPR006070: IPR004388; KEGG: pdi:BDI_3382 hypothetical protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_004253049.1 COGs: COG0176 Transaldolase; HAMAP: transaldolase; InterPro IPR001585: IPR004731; KEGG: pdi:BDI_2999 translaldolase; PFAM: Transaldolase; SPTR: Transaldolase; TIGRFAM: Transaldolase C; PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family YP_004253050.1 KEGG: lbz:LbrM19_V2.1540 hypothetical protein YP_004253051.1 InterPro IPR013766: IPR000866; KEGG: bth:BT_3069 disulphide-isomerase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; SPTR: Thioredoxin; PFAM: Thioredoxin; Redoxin YP_004253052.1 KEGG: cpi:Cpin_5144 hypothetical protein; SPTR: uncharacterized protein YP_004253053.1 KEGG: cpi:Cpin_1099 hypothetical protein; SPTR: uncharacterized protein YP_004253054.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004253055.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_2250 FecR protein; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004253056.1 COGs: COG0124 Histidyl-tRNA synthetase; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR015807: IPR002314: IPR004154; KEGG: pdi:BDI_3784 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase YP_004253057.1 COGs: COG2986 Histidine ammonia-lyase; InterPro IPR001106: IPR005921; KEGG: bth:BT_2690 histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase; PRIAM: Histidine ammonia-lyase; SPTR: Histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase YP_004253058.1 KEGG: btl:BALH_2654 hypothetical protein; SPTR: Acriflavine resistance protein B YP_004253059.1 COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890; KEGG: pdi:BDI_3747 hypothetical protein; PFAM: Alpha-2-macroglobulin, N-terminal; SPTR: uncharacterized protein; PFAM: Alpha-2-macroglobulin family; MG2 domain; Alpha-2-macroglobulin family N-terminal region YP_004253060.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: hmg:100209308 hypothetical protein LOC100209308; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004253061.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: fbc:FB2170_13341 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004253062.1 KEGG: ptm:GSPATT00038152001 hypothetical protein; SPTR: Chromosome undetermined scaffold_178, whole genome shotgun sequence YP_004253063.1 InterPro IPR013740; KEGG: bvu:BVU_1977 thiol-disulfide oxidoreductase; PFAM: Redoxin; SPTR: Thioredoxin family protein; PFAM: Redoxin YP_004253064.1 KEGG: pdi:BDI_2767 hypothetical protein; SPTR: TPR domain protein YP_004253065.1 COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR018164: IPR012947: IPR003156: IPR002318; KEGG: bfs:BF0689 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase YP_004253066.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: bvu:BVU_1909 peptidase; PFAM: Peptidase M23; SPTR: peptidase; PFAM: Peptidase M23 YP_004253067.1 InterPro IPR000551; KEGG: gfo:GFO_0228 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator; PFAM: MerR family regulatory protein YP_004253068.1 COGs: COG0327 conserved hypothetical protein; InterPro IPR002678; KEGG: bfr:BF2389 hypothetical protein; PFAM: NGG1p interacting factor 3, NIF3; SPTR: uncharacterized protein; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family YP_004253069.1 COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: bvu:BVU_3315 hypothetical protein; PFAM: Protein of unknown function DUF164; SPTR: uncharacterized protein; PFAM: zinc ribbon domain YP_004253070.1 COGs: COG0525 Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; InterPro IPR002300: IPR013155: IPR019499: IPR002303; KEGG: bvu:BVU_2574 valyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; PRIAM: Valine--tRNA ligase; SPTR: Valyl-tRNA synthetase; TIGRFAM: Valyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase YP_004253071.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004253072.1 COGs: COG3550 conserved hypothetical protein; InterPro IPR012894: IPR012893; KEGG: bvu:BVU_3758 capsule biosynthesis enzyme-like protein; PFAM: HipA-like, N-terminal; HipA-like, C-terminal; SPTR: uncharacterized protein; PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain YP_004253073.1 InterPro IPR001387; KEGG: bvu:BVU_3759 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; PFAM: Helix-turn-helix YP_004253074.1 KEGG: fba:FIC_00403 cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase; SPTR: Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase; PFAM: Disulphide bond corrector protein DsbC YP_004253075.1 KEGG: bvu:BVU_2221 hypothetical protein; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: SusD family YP_004253076.1 InterPro IPR012910; KEGG: bvu:BVU_2220 hypothetical protein; PFAM: TonB-dependent receptor, plug; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004253077.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004253078.1 COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: cti:pRALTA_0109 conserved hypothetical protein; DNA interacting protein (helicase/transcriptional regulator); PFAM: ATPase, AAA-4; SPTR: uncharacterized protein; PFAM: Divergent AAA domain YP_004253079.1 COGs: COG2865 transcriptional regulator protein; KEGG: bth:BT_3327 ATP-dependent DNA helicase RecG; SPTR: Divergent AAA domain protein YP_004253080.1 KEGG: ppr:PBPRA0358 transposase; SPTR: Transposase YP_004253081.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: sli:Slin_2375 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004253082.1 COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent deacetylase; InterPro IPR003000; KEGG: sli:Slin_2032 silent information regulator protein Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: NAD-dependent deacetylase (Regulatory protein SIR2-like protein); PFAM: Sir2 family YP_004253083.1 COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR002792: IPR010280: IPR001566; KEGG: pdi:BDI_1030 RNA methyltransferase; PFAM: (Uracil-5)-methyltransferase; Deoxyribonuclease/rho motif-related TRAM; SPTR: RNA methyltransferase; TIGRFAM: 23S rRNA methyltransferase/RumA; PFAM: tRNA (Uracil-5-)-methyltransferase; TRAM domain; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA YP_004253084.1 COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: ava:Ava_2868 ferritin and Dps; PFAM: Ferritin/Dps protein; SPTR: Ferritin and Dps; PFAM: Ferritin-like domain YP_004253085.1 COGs: COG0657 Esterase/lipase; KEGG: bvu:BVU_2755 xylanase; SPTR: uncharacterized protein; PFAM: alpha/beta hydrolase fold YP_004253086.1 COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; HAMAP: Camphor resistance CrcB protein; InterPro IPR003691; KEGG: bth:BT_4574 hypothetical protein; PFAM: Camphor resistance CrcB protein; SPTR: Protein crcB homolog; TIGRFAM: Camphor resistance CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein YP_004253087.1 KEGG: dfe:Dfer_1553 hypothetical protein; SPTR: uncharacterized protein; PFAM: DNA alkylation repair enzyme YP_004253088.1 COGs: COG1866 Phosphoenolpyruvate carboxykinase (ATP); HAMAP: Phosphoenolpyruvate carboxykinase, ATP-utilising; InterPro IPR001272; KEGG: bvu:BVU_0983 phosphoenolpyruvate carboxykinase; PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; PRIAM: Phosphoenolpyruvate carboxykinase (ATP); SPTR: Phosphoenolpyruvate carboxykinase [ATP]; TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; PFAM: Phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP) YP_004253089.1 COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451: IPR010137; KEGG: fjo:Fjoh_2902 UDP-N-acetylglucosamine acyltransferase; PRIAM:Acyl-ACP--UDP-N-acetylgluc osamineO-acyltransferase; SPTR:Acyl-ACP--UDP-N-acetylgluco samineO-acyltransferase; TIGRFAM:Acyl-ACP--UDP-N-acetylgl ucosamineO-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase YP_004253090.1 COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; HAMAP: Beta-hydroxyacyl-ACP dehydratase FabZ; InterPro IPR010084: IPR004463: IPR013114; KEGG: pdi:BDI_2105 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; Beta-hydroxyacyl-ACP dehydratase, FabA/FabZ; SPTR: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; Beta-hydroxyacyl-ACP dehydratase FabZ; PFAM: FabA-like domain; UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; beta-hydroxyacyl-ACP dehydratase FabZ YP_004253091.1 COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro IPR007691: IPR020573: IPR001451; KEGG: pdi:BDI_2104 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_004253092.1 HAMAP: Uncharacterised protein family UPF0090, bacteria; InterPro IPR020790: IPR003728; KEGG: bfs:BF0217 hypothetical protein; PFAM: Uncharacterised protein family UPF0090; SPTR: Ribosome maturation factor rimP; PFAM: Uncharacterised BCR, YhbC family COG0779 YP_004253093.1 COGs: COG0195 Transcription elongation factor; InterPro IPR013735: IPR010213; KEGG: bfs:BF0218 transcription elongation factor NusA; PFAM: Transcription factor NusA, N-terminal; SPTR: uncharacterized protein; TIGRFAM: Transcription termination factor NusA; PFAM: NusA N-terminal domain; TIGRFAM: transcription termination factor NusA YP_004253094.1 COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR006847: IPR000795: IPR004161: IPR000178: IPR 005225; KEGG: pdi:BDI_3534 translation initiation factor IF-2; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; SPTR: Translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2 YP_004253095.1 KEGG: bth:BT_0186 thiol:disulfide interchange protein DsbD precursor; SPTR: uncharacterized protein YP_004253096.1 COGs: COG2843 protein of poly-gamma-glutamate biosynthesis (capsule formation); InterPro IPR019079; KEGG: bth:BT_1608 capsule biosynthesis protein CapA; PFAM: Capsule synthesis protein, CapA; SPTR: Capsule biosynthesis protein CapA; PFAM: Bacterial capsule synthesis protein PGA_cap YP_004253097.1 COGs: COG1803 Methylglyoxal synthase; InterPro IPR011607: IPR004363; KEGG: gfo:GFO_1642 methylglyoxal synthase; PFAM: MGS-like; PRIAM: Methylglyoxal synthase; SPTR: uncharacterized protein; TIGRFAM: Methylglyoxal synthase; PFAM: MGS-like domain; TIGRFAM: methylglyoxal synthase YP_004253098.1 KEGG: bvu:BVU_2034 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004253099.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bfs:BF3511 metal resistance related exported protein; SPTR: Cation efflux system protein; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit YP_004253100.1 COGs: COG3696 silver efflux pump; InterPro IPR004763: IPR001036; KEGG: pdi:BDI_1605 cation efflux system protein, AcrB/AcrD/AcrF family protein; PFAM: Acriflavin resistance protein; SPTR: Cation efflux system protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium) YP_004253101.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: pdi:BDI_1604 hypothetical protein; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004253102.1 COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: caa:Caka_2095 haloacid dehalogenase domain protein hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase; PFAM: haloacid dehalogenase-like hydrolase YP_004253103.1 InterPro IPR003736: IPR006683; KEGG: sta:STHERM_c20120 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: thioesterase; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1 YP_004253104.1 COGs: COG1725 transcriptional regulator protein; InterPro IPR000524; KEGG: cpi:Cpin_7289 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; SPTR: Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family YP_004253105.1 KEGG: mvu:Metvu_1517 aldehyde ferredoxin oxidoreductase; SPTR: uncharacterized protein YP_004253106.1 KEGG: bth:BT_1305 hypothetical protein; SPTR: uncharacterized protein YP_004253107.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: dfe:Dfer_5189 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter YP_004253108.1 COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: bth:BT_2566 HIT family protein; PFAM: Histidine triad (HIT) protein; SPTR: uncharacterized protein; PFAM: HIT domain YP_004253109.1 COGs: COG0782 Transcription elongation factor; HAMAP: Transcription elongation factor greA; InterPro IPR006359: IPR001437; KEGG: pgn:PGN_0423 transcription elongation factor; PFAM: Transcription elongation factor, GreA/GreB domain, prokaryotic; SPTR: Transcription elongation factor; TIGRFAM: Prokaryotic transcription elongation factor GreA; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA YP_004253110.1 COGs: COG0335 Ribosomal protein L19; HAMAP: Ribosomal protein L19; InterPro IPR001857; KEGG: bfs:BF0513 50S ribosomal protein L19; PFAM: Ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: Ribosomal protein L19; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type YP_004253111.1 COGs: COG1109 Phosphomannomutase; InterPro IPR005844: IPR005845: IPR005846: IPR005843; KEGG: bth:BT_1548 phosphoglucomutase phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; SPTR: uncharacterized protein; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_004253112.1 COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: bth:BT_3982 exonuclease V subunit alpha; SPTR: uncharacterized protein; PFAM: Type III restriction enzyme, res subunit YP_004253113.1 KEGG: pdi:BDI_2503 hypothetical protein; SPTR: uncharacterized protein YP_004253114.1 KEGG: bfs:BF0677 hypothetical protein; SPTR: uncharacterized protein YP_004253115.1 COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398; KEGG: pmz:HMPREF0659_A6089 RNA methyltransferase, RsmD family; PFAM: Conserved hypothetical protein CHP00095; SPTR: RNA methyltransferase, RsmD family; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family YP_004253116.1 COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; InterPro IPR003437: IPR020580; KEGG: slt:Slit_2861 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; SPTR: uncharacterized protein; TIGRFAM: Glycine cleavage system P-protein; PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating) YP_004253117.1 COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR006218: IPR006175; KEGG: pdi:BDI_2599 translation initiation inhibitor; PFAM: DAHP synthetase I/KDSA; Endoribonuclease L-PSP; SPTR: uncharacterized protein; PFAM: DAHP synthetase I family; Endoribonuclease L-PSP YP_004253118.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: bfs:BF2979 ABC transport system, membrane protein; PFAM: ABC transporter, transmembrane domain; ABC transporter-like; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Multidrug resistance ABC transporter; PFAM: ABC transporter transmembrane region; ABC transporter YP_004253119.1 COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593: IPR001140: IPR003439; KEGG: bfs:BF2978 ABC transport system, ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transport system, ATP-binding protein; PFAM: ABC transporter transmembrane region; ABC transporter YP_004253120.1 InterPro IPR002379; KEGG: bvu:BVU_3561 V-type ATP synthase subunit K; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: uncharacterized protein; PFAM: ATP synthase subunit C YP_004253121.1 COGs: COG1269 H+-ATPase subunit I; InterPro IPR002490; KEGG: bvu:BVU_3562 V-type ATP synthase subunit I; PFAM: ATPase, V0/A0 complex, 116kDa subunit; SPTR: uncharacterized protein; PFAM: V-type ATPase 116kDa subunit family YP_004253122.1 COGs: COG1394 H+-ATPase subunit D; InterPro IPR002699; KEGG: bfs:BF2745 V-type ATP synthase subunit D; PFAM: ATPase, V1/A1 complex, subunit D; SPTR: uncharacterized protein; TIGRFAM: ATPase, V1/A1 complex, subunit D; PFAM: ATP synthase subunit D; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D YP_004253123.1 COGs: COG1156 H+-ATPase subunit B; InterPro IPR004100: IPR000194; KEGG: bth:BT_1298 V-type ATP synthase subunit B; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; PRIAM: H(+)-transporting two-sector ATPase; SPTR: uncharacterized protein; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain YP_004253124.1 COGs: COG1155 H+-ATPase subunit A; InterPro IPR004100: IPR000194; KEGG: pdi:BDI_0827 V-type ATP synthase subunit A; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; SPTR: V-type ATPase, subunit A; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain YP_004253125.1 KEGG: bvu:BVU_3566 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2764) YP_004253126.1 KEGG: bvu:BVU_3567 V-type ATP synthase subunit E; SPTR: uncharacterized protein YP_004253127.1 InterPro IPR000157; KEGG: cbr:CBG03611 C. briggsae CBR-TIR-1 protein; SMART: Toll-Interleukin receptor; SPTR: C. briggsae CBR-TIR-1 protein YP_004253128.1 KEGG: cpi:Cpin_2233 hypothetical protein; SPTR: uncharacterized protein; PFAM: OmpW family YP_004253129.1 KEGG: pdi:BDI_1218 hypothetical protein; SPTR: uncharacterized protein YP_004253130.1 COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: bvu:BVU_0475 hypothetical protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: tansport related protein; PFAM: Biopolymer transport protein ExbD/TolR YP_004253131.1 COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: bvu:BVU_0476 biopolymer transport protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; SPTR: uncharacterized protein; PFAM: MotA/TolQ/ExbB proton channel family YP_004253132.1 KEGG: rbi:RB2501_08130 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF3332) YP_004253133.1 COGs: COG2855 membrane protein; InterPro IPR004630: IPR018383; KEGG: bfr:BF1295 hypothetical protein; PFAM: Uncharacterised protein family UPF0324, prokaryote; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0324, bacteria; PFAM: Conserved hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein YP_004253134.1 COGs: COG1475 transcriptional regulator protein; InterPro IPR003115; KEGG: bfs:BF2181 hypothetical protein; SMART: ParB-like nuclease; SPTR: uncharacterized protein; PFAM: ParB-like nuclease domain YP_004253135.1 COGs: COG3969 phosphoadenosine phosphosulfate sulfotransferase; InterPro IPR002500; KEGG: pdi:BDI_1611 hypothetical protein; PFAM: Phosphoadenosine phosphosulphate reductase; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF3440); Phosphoadenosine phosphosulfate reductase YP_004253136.1 KEGG: pdi:BDI_1612 hypothetical protein; SPTR: uncharacterized protein YP_004253137.1 COGs: COG0566 rRNA methylase; InterPro IPR004441: IPR013123: IPR001537; KEGG: pdi:BDI_0708 tRNA/rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: SpoU rRNA Methylase; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3 YP_004253138.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593: IPR003439; KEGG: bvu:BVU_2032 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004253139.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR005931: IPR015590; KEGG: dfe:Dfer_3807 delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: 1-pyrroline-5-carboxylate dehydrogenase; SPTR: 1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 1; PFAM: Aldehyde dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 YP_004253140.1 COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: pdi:BDI_2916 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein YP_004253141.1 COGs: COG1808 membrane protein; InterPro IPR005240; KEGG: bth:BT_3288 integral membrane protein; PFAM: Protein of unknown function DUF389; SPTR: integral membrane protein; PFAM: Domain of unknown function (DUF389); TIGRFAM: uncharacterized hydrophobic domain YP_004253142.1 COGs: COG2096 conserved hypothetical protein; InterPro IPR017858: IPR002779; KEGG: sli:Slin_1099 ATP/cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: Cobalamin adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase YP_004253143.1 KEGG: bvu:BVU_1467 hypothetical protein; SPTR: uncharacterized protein YP_004253144.1 COGs: COG1200 RecG-like helicase; InterProIPR014001: IPR001650: IPR004609: IPR004365: IPR 011545; KEGG: pdi:BDI_2699 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: uncharacterized protein; TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; OB-fold nucleic acid binding domain; TIGRFAM: ATP-dependent DNA helicase RecG YP_004253145.1 KEGG: rbi:RB2501_08130 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF3332) YP_004253146.1 COGs: COG1027 Aspartate ammonia-lyase; InterPro IPR004708: IPR000362: IPR018951; KEGG: coc:Coch_0193 aspartate ammonia-lyase; PFAM: Fumarate lyase; Fumarase C, C-terminal; PRIAM: Aspartate ammonia-lyase; SPTR: Aspartate ammonia-lyase; TIGRFAM: Aspartate ammonia-lyase; PFAM: Lyase; Fumarase C C-terminus; TIGRFAM: aspartate ammonia-lyase YP_004253147.1 KEGG: gfo:GFO_0852 hypothetical protein; SPTR: uncharacterized protein YP_004253148.1 KEGG: bth:BT_2732 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3467) YP_004253149.1 COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; InterProIPR012754: IPR006592: IPR007080: IPR000722: IPR 007066: IPR007083: IPR007081; KEGG: bfs:BF4014 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; SMART: RNA polymerase, N-terminal; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form YP_004253150.1 COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; InterProIPR010243: IPR007644: IPR007642: IPR007645: IPR 019462: IPR007120: IPR007641; KEGG: bvu:BVU_0813 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 2; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit YP_004253151.1 COGs: COG0222 Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; InterPro IPR000206: IPR013823; KEGG: zpr:ZPR_1167 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12 YP_004253152.1 COGs: COG0244 Ribosomal protein L10; HAMAP: 50S ribosomal protein L10; InterPro IPR001790; KEGG: gfo:GFO_2372 50S ribosomal protein L10; PFAM: Ribosomal protein L10; SPTR: 50S ribosomal protein L10; PFAM: Ribosomal protein L10 YP_004253153.1 COGs: COG0081 Ribosomal protein L1; InterPro IPR005878: IPR002143; KEGG: bvu:BVU_0816 50S ribosomal protein L1; PFAM: Ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast YP_004253154.1 COGs: COG0080 Ribosomal protein L11; InterPro IPR000911: IPR006519: IPR020784: IPR020783; KEGG: phe:Phep_0845 ribosomal protein L11; PFAM: Ribosomal protein L11, N-terminal; Ribosomal protein L11, C-terminal; SMART: Ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11 YP_004253155.1 COGs: COG0250 Transcription antiterminator; InterPro IPR006645: IPR005824: IPR001062; KEGG: bth:BT_2739 transcription anti-termination protein; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; SPTR: Transcription antitermination protein nusG; TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG YP_004253156.1 InterPro IPR005807: IPR001901; KEGG: pgn:PGN_1577 preprotein translocase SecE subunit; PFAM: Protein secE/sec61-gamma protein; SPTR: Preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex; manually curated; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial YP_004253157.1 COGs: COG0050 GTPase - translation elongation factors; InterProIPR004541: IPR005225: IPR000795: IPR004161: IPR 004160; KEGG: bth:BT_2740 elongation factor Tu; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; SPTR: Elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU YP_004253158.1 InterPro IPR003489; KEGG: pdi:BDI_2277 sigma-54 modulation protein; SPTR: Sigma-54 modulation protein; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein YP_004253159.1 COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107: IPR002104; KEGG: bvu:BVU_0826 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase YP_004253160.1 HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: pdi:BDI_2279 30S ribosomal protein S21; PFAM: Ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21 YP_004253161.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148; KEGG: bth:BT_4666 K+ uptake system protein; PFAM: Regulator of K+ conductance, N-terminal; SPTR: K+ uptake system protein; PFAM: TrkA-N domain YP_004253162.1 COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: bth:BT_4665 K+ uptake protein; PFAM: Cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: K+ uptake protein; PFAM: Cation transport protein YP_004253163.1 KEGG: pdi:BDI_3598 hypothetical protein; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004253164.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: pdi:BDI_2096 hypothetical protein; PFAM: Peptidase M23; SPTR: uncharacterized protein; PFAM: Peptidase M23 YP_004253165.1 KEGG: bfs:BF3407 hypothetical protein; SPTR: uncharacterized protein YP_004253166.1 KEGG: bth:BT_4418 hypothetical protein; SPTR: uncharacterized protein; PFAM: Cell division protein ZapA YP_004253167.1 COGs: COG1418 HD superfamily hydrolase; HAMAP: 2,3-cyclic-nucleotide 2-phosphodiesterase; InterProIPR017705: IPR004087: IPR003607: IPR006675: IPR 018111: IPR006674; KEGG: pdi:BDI_1891 phosphodiesterase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; K Homology, type 1, subgroup; SMART: Metal-dependent phosphohydrolase, HD domain; K Homology; SPTR: uncharacterized protein; TIGRFAM: 2,3-cyclic-nucleotide 2-phosphodiesterase; HDIG; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG YP_004253168.1 KEGG: bfs:BF4218 hypothetical protein; SPTR: uncharacterized protein YP_004253169.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: bfr:BF0793 membrane transport protein; PFAM: Mechanosensitive ion channel MscS; SPTR: membrane transport protein; PFAM: Mechanosensitive ion channel YP_004253170.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: pdi:BDI_3435 cation efflux system protein; PFAM: Acriflavin resistance protein; SPTR: uncharacterized protein; PFAM: AcrB/AcrD/AcrF family YP_004253171.1 COGs: COG0841 Cation/multidrug efflux pump; KEGG: bfs:BF2984 ABC transport system, membrane protein; SPTR: Drug efflux protein; PFAM: AcrB/AcrD/AcrF family YP_004253172.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bvu:BVU_0061 cation efflux system protein; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit YP_004253173.1 COGs: COG3307 Lipid A core - O-antigen ligase; InterPro IPR007016; KEGG: pdi:BDI_3437 hypothetical protein; PFAM: O-antigen ligase-related; SPTR: uncharacterized protein; PFAM: O-Antigen ligase YP_004253174.1 InterPro IPR012910: IPR000531; KEGG: phe:Phep_3172 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004253175.1 InterPro IPR012944; KEGG: phe:Phep_3171 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004253176.1 KEGG: bfr:BF0051 hypothetical protein; SPTR: uncharacterized protein YP_004253177.1 KEGG: pdi:BDI_3423 hypothetical protein; SPTR: uncharacterized protein YP_004253178.1 KEGG: apr:Apre_1337 peptidase U32; SPTR: Citrate lyase, alpha subunit YP_004253179.1 InterPro IPR011467; KEGG: pdi:BDI_3442 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1573) YP_004253180.1 KEGG: tva:TVAG_397230 surface antigen BspA-like; SPTR: uncharacterized protein YP_004253181.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: sth:STH1040 two-component sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004253182.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: oca:OCAR_4179 KDP operon transcriptional regulatory protein KdpE; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain YP_004253183.1 COGs: COG3340 Peptidase E; InterPro IPR005320; KEGG: bvu:BVU_3724 hypothetical protein; PFAM: Peptidase S51, dipeptidase E; SPTR: uncharacterized protein; PFAM: Peptidase S51 YP_004253184.1 COGs: COG2378 transcriptional regulator protein; InterPro IPR001034; KEGG: dfe:Dfer_1092 helix-turn-helix type 11 domain protein; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Transcriptional regulator, DeoR family; PFAM: HTH domain YP_004253185.1 KEGG: bfs:BF2121 hypothetical protein; SPTR: uncharacterized protein YP_004253186.1 KEGG: bfr:BF3477 hypothetical protein; SPTR: uncharacterized protein; PFAM: RteC protein YP_004253187.1 KEGG: bfs:BF3287 hypothetical protein; SPTR: uncharacterized protein YP_004253188.1 KEGG: bfs:BF3286 hypothetical protein; SPTR: uncharacterized protein YP_004253189.1 InterPro IPR005094; KEGG: bfs:BF3285 mobilization protein; PFAM: Endonuclease relaxase, MobA/VirD2; SPTR: uncharacterized protein; PFAM: Relaxase/Mobilisation nuclease domain YP_004253190.1 InterPro IPR008687; KEGG: bfs:BF3284 mobilization protein; PFAM: Bacterial mobilisation; SPTR: Mobilization protein BmgB; PFAM: Bacterial mobilisation protein (MobC) YP_004253191.1 KEGG: bfs:BF3283 transposon-related/mobilisation protein; SPTR: uncharacterized protein YP_004253192.1 COGs: COG5545 P-loop ATPase and inactivated derivatives; InterPro IPR007936; KEGG: bfs:BF3282 hypothetical protein; PFAM: Virulence-associated E; SPTR: uncharacterized protein; PFAM: Virulence-associated protein E YP_004253193.1 KEGG: cat:CA2559_00405 excisionase; SPTR: uncharacterized protein YP_004253194.1 KEGG: bfs:BF3281 hypothetical protein; SPTR: uncharacterized protein YP_004253195.1 KEGG: bfs:BF3280 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: DNA binding domain, excisionase YP_004253196.1 InterPro IPR013568; KEGG: gca:Galf_0374 SEFIR domain-containing protein; PFAM: SEFIR; SPTR: SEFIR domain protein; PFAM: SEFIR domain YP_004253197.1 InterPro IPR002104; KEGG: bfs:BF2111 bacteriophage integrase; PFAM: Integrase, catalytic core, phage; SPTR: uncharacterized protein; PFAM: Phage integrase YP_004253198.1 COGs: COG2820 Uridine phosphorylase; InterPro IPR000845; KEGG: bfr:BF1175 purine nucleoside phosphorylase II; PFAM: Nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase II; PFAM: Phosphorylase superfamily YP_004253199.1 KEGG: pgi:PG1218 hypothetical protein; SPTR: uncharacterized protein YP_004253200.1 COGs: COG4690 Dipeptidase; InterPro IPR005322; KEGG: pdi:BDI_1198 dipeptidase; PFAM: Peptidase C69, dipeptidase A; SPTR: uncharacterized protein; PFAM: Peptidase C69 YP_004253201.1 COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063; KEGG: bvu:BVU_3645 hypothetical protein; PFAM: PP-loop; SPTR: uncharacterized protein; PFAM: PP-loop family YP_004253202.1 COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR005673: IPR006059; KEGG: bth:BT_0009 phosphate-binding periplasmic protein precursor, ABC transporter; PFAM: Bacterial extracellular solute-binding, family 1; SPTR: Phosphate ABC transporter, phosphate-binding protein PstS; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate ABC transporter, phosphate-binding protein YP_004253203.1 COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR011864: IPR000515; KEGG: har:HEAR1108 phosphate ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: uncharacterized protein; TIGRFAM: Phosphate ABC transporter, permease PstC; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease PstC YP_004253204.1 COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR005672: IPR000515; KEGG: gem:GM21_2504 phosphate ABC transporter, inner membrane subunit PstA; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: uncharacterized protein; TIGRFAM: Phosphate transport system permease 2; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease PstA YP_004253205.1 COGs: COG1117 ABC-type phosphate transport system ATPase component; InterPro IPR003593: IPR005670: IPR003439; KEGG: gem:GM21_2505 phosphate ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; TIGRFAM: Phosphate transport system permease 1; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein YP_004253206.1 COGs: COG0704 Phosphate uptake regulator; InterPro IPR008170; KEGG: hya:HY04AAS1_0012 phosphate uptake regulator, PhoU; PFAM: PhoU; SPTR: Phosphate transport system protein PhoU homolog; PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU YP_004253207.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: bvu:BVU_4095 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004253208.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: bfs:BF1589 two-component histidine kinase sensor protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004253209.1 KEGG: pdi:BDI_2637 hypothetical protein; SPTR: uncharacterized protein YP_004253210.1 COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: bvu:BVU_3119 integrase; PFAM: Integrase, catalytic core, phage; SPTR: uncharacterized protein; PFAM: Phage integrase YP_004253211.1 KEGG: aag:AaeL_AAEL006210 PFTAIRE-interacting factor 1A, SPTR: uncharacterized protein YP_004253212.1 KEGG: bvu:BVU_2295 hypothetical protein; SPTR: uncharacterized protein YP_004253213.1 KEGG: esa:ESA_02336 hypothetical protein; SPTR: uncharacterized protein YP_004253214.1 KEGG: bmd:BMD_3638 hypothetical protein; SPTR: uncharacterized protein YP_004253215.1 COGs: COG2003 DNA repair protein; InterPro IPR001405; KEGG: bvu:BVU_2472 DNA repair protein; PFAM: Uncharacterised protein family, RadC-like; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2466) YP_004253216.1 KEGG: glo:Glov_0061 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2743) YP_004253217.1 KEGG: bvu:BVU_3191 hypothetical protein; SPTR: Predicted protein YP_004253218.1 KEGG: srm:PSR_61030 conserved hypothetical protein containing fibronectin, type III domain YP_004253219.1 KEGG: cpv:cgd6_390 hypothetical protein; SPTR: uncharacterized protein YP_004253220.1 KEGG: fjo:Fjoh_1189 regulator of chromosome condensation, RCC1; SPTR: Cell wall surface anchor family protein YP_004253221.1 KEGG: ate:Athe_1662 hypothetical protein; SPTR: uncharacterized protein YP_004253223.1 KEGG: dat:HRM2_43390 4Fe-4S iron-sulfur binding protein (ferredoxin); SPTR: 4Fe-4S iron-sulfur binding protein (Ferredoxin) YP_004253226.1 KEGG: cts:Ctha_2118 hypothetical protein; SPTR: uncharacterized protein; manually curated YP_004253227.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: bfr:BF3029 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004253228.1 InterPro IPR000601; KEGG: fjo:Fjoh_1410 PKD domain-containing protein; PFAM: PKD; SPTR: uncharacterized protein; PFAM: PKD domain YP_004253229.1 InterPro IPR000601; KEGG: fjo:Fjoh_1410 PKD domain-containing protein; PFAM: PKD; SPTR: uncharacterized protein YP_004253230.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593: IPR003439; KEGG: bvu:BVU_2053 iron(III) ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Iron(III) ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004253231.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: bvu:BVU_2054 iron(III) ABC transporter permease; PFAM: Bacterial transport system permease; SPTR: uncharacterized protein; PFAM: FecCD transport family YP_004253232.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; KEGG: bvu:BVU_2055 iron-related ABC transport periplasmic binding protein; SPTR: Periplasmic binding protein; PFAM: Periplasmic binding protein YP_004253233.1 COGs: COG2109 ATP:corrinoid adenosyltransferase; InterPro IPR003724; KEGG: cby:CLM_1105 cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; SPTR: Cob(I)yrinic acid a,c-diamide adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase YP_004253234.1 InterPro IPR000494; KEGG: bfr:BF3031 cell wall biogenesis protein; PFAM: EGF receptor, L domain; SPTR: Predicted protein; PFAM: Receptor L domain YP_004253235.1 KEGG: yli:YALI0D07480g YALI0D07480p; SPTR: Predicted protein YP_004253236.1 COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730: IPR014731; KEGG: pgn:PGN_1174 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; Electron transfer flavoprotein, alpha subunit, C-terminal; SPTR: uncharacterized protein; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain YP_004253237.1 COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: bpo:BP951000_1041 electron transfer flavoprotein subunit beta; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: uncharacterized protein; PFAM: Electron transfer flavoprotein domain YP_004253238.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: pgn:PGN_1172 acyl-CoA dehydrogenase short-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; PRIAM: Butyryl-CoA dehydrogenase; SPTR: uncharacterized protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004253239.1 COGs: COG0620 Methionine synthase II (cobalamin-independent); InterPro IPR002629; KEGG: ckr:CKR_1919 hypothetical protein; PFAM: Methionine synthase, vitamin-B12 independent; SPTR: uncharacterized protein; PFAM: Cobalamin-independent synthase, Catalytic domain YP_004253240.1 InterPro IPR019271; KEGG: bfr:BF3025 hypothetical protein; PFAM: Protein of unknown function DUF2284, metal-binding; SPTR: uncharacterized protein; PFAM: Predicted metal-binding protein (DUF2284) YP_004253241.1 COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: pdi:BDI_0769 hypothetical protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: uncharacterized protein; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family YP_004253242.1 COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: pgn:PGN_0723 succinate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: Acetaldehyde dehydrogenase (acetylating); SPTR: Succinate-semialdehyde dehydrogenase [NAD(P)+]; PFAM: Aldehyde dehydrogenase YP_004253243.1 COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: pgn:PGN_0724 NAD-dependent 4-hydroxybutyrate dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: 4-hydroxybutyrate dehydrogenase; SPTR: NAD-dependent 4-hydroxybutyrate dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase YP_004253244.1 COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: pgn:PGN_0725 4-hydroxybutyrate CoA-transferase; PFAM: Acetyl-CoA hydrolase/transferase; SPTR: 4-hydroxybutyrate CoA-transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain YP_004253245.1 InterPro IPR001075; KEGG: pgn:PGN_0726 hypothetical protein; PFAM: NIF system FeS cluster assembly, NifU, C-terminal; SPTR: Fe-S cluster assembly protein NifU; PFAM: NifU-like domain YP_004253246.1 COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR004925; KEGG: pgi:PG0692 4-hydroxybutyryl-CoA dehydratase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; PRIAM: Vinylacetyl-CoA Delta-isomerase; SPTR: 4-hydroxybutyryl-CoA dehydratase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal YP_004253247.1 COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: ddf:DEFDS_1228 propionyl-CoA carboxylase subunit beta; PFAM: Carboxyl transferase; PRIAM: Propionyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase, beta subunit; PFAM: Carboxyl transferase domain YP_004253248.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR005481: IPR005479: IPR005482; KEGG: bmq:BMQ_2486 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Pyruvate carboxylase; SPTR: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit YP_004253249.1 COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: phe:Phep_4063 biotin/lipoyl attachment domain-containing protein; PFAM: Biotin/lipoyl attachment; SPTR: Biotin/lipoyl attachment domain-containing protein; PFAM: Biotin-requiring enzyme YP_004253250.1 COGs: COG2966 conserved hypothetical protein; InterPro IPR010619; KEGG: bfs:BF2716 hypothetical protein; PFAM: Protein of unknown function DUF1212; SPTR: integral membrane protein; PFAM: Protein of unknown function (DUF1212) YP_004253251.1 COGs: COG3610 conserved hypothetical protein; KEGG: amu:Amuc_1963 hypothetical protein; SPTR: uncharacterized protein YP_004253252.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: bfr:BF1297 transcription regulator; SPTR: uncharacterized protein; PFAM: Ferric uptake regulator family YP_004253253.1 COGs: COG2217 Cation transport ATPase; InterProIPR006416: IPR006404: IPR001757: IPR008250: IPR 005834; KEGG: pdi:BDI_0217 cation-transporting ATPase, P-type, zinc-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; PRIAM: Zinc-exporting ATPase; SPTR: uncharacterized protein; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase YP_004253254.1 COGs: COG2032 Cu/Zn superoxide dismutase; InterPro IPR001424; KEGG: syr:SynRCC307_0325 superoxide dismutase; PFAM: Superoxide dismutase, copper/zinc binding; SPTR: Superoxide dismutase [Cu-Zn]; PFAM: Copper/zinc superoxide dismutase (SODC) YP_004253255.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: ATP-dependent Clp protease proteolytic subunit; InterPro IPR001907; KEGG: pgn:PGN_1549 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP YP_004253256.1 COGs: COG1219 ATP-dependent protease Clp ATPase subunit; HAMAP: Clp protease, ATP-binding subunit ClpX; InterProIPR004487: IPR003593: IPR010603: IPR013093: IPR 019489; KEGG: bth:BT_3843 ATP-dependent protease ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent Clp protease ATP-binding subunit ClpX; TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_004253257.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004253258.1 KEGG: pgn:PGN_1139 hypothetical protein; SPTR: uncharacterized protein YP_004253259.1 KEGG: ppr:PBPRA0358 transposase; SPTR: Transposase YP_004253260.1 COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR004467: IPR000836; KEGG: pgn:PGN_1140 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: orotate phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyl transferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase YP_004253261.1 InterPro IPR000086; KEGG: coc:Coch_1651 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: Nudix hydrolase; PFAM: NUDIX domain YP_004253262.1 COGs: COG3178 phosphotransferase related to Ser/Thr protein kinase; InterPro IPR002575; KEGG: pdi:BDI_3808 hypothetical protein; PFAM: Aminoglycoside phosphotransferase; SPTR: uncharacterized protein; PFAM: Phosphotransferase enzyme family YP_004253263.1 KEGG: pdi:BDI_3077 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2723) YP_004253264.1 SPTR: Peptide chain release factor 2; manually curated; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2 YP_004253265.1 COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011913: IPR011611; KEGG: dap:Dacet_1852 RfaE bifunctional protein; PFAM: Carbohydrate/purine kinase; SPTR: RfaE bifunctional protein; TIGRFAM: RfaE bifunctional protein, domain I; PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I YP_004253266.1 COGs: COG0311 glutamine amidotransferase involved in pyridoxine biosynthesis; HAMAP: Glutamine amidotransferase subunit pdxT; InterPro IPR002161; KEGG: clj:CLJU_c39590 glutamine amidotransferase subunit PdxT; PFAM: SNO glutamine amidotransferase; SPTR: Glutamine amidotransferase subunit pdxT; TIGRFAM: SNO glutamine amidotransferase; PFAM: SNO glutamine amidotransferase; TIGRFAM: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 YP_004253267.1 COGs: COG0214 Pyridoxine biosynthesis enzyme; HAMAP: Vitamin B6 biosynthesis protein; InterPro IPR001852; KEGG: clj:CLJU_c39580 pyridoxal biosynthesis protein PdxS; PFAM: Vitamin B6 biosynthesis protein; SPTR: Pyridoxal biosynthesis lyase pdxS; TIGRFAM: Vitamin B6 biosynthesis protein; PFAM: SOR/SNZ family; TIGRFAM: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 YP_004253268.1 COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: fbc:FB2170_14573 aldose 1-epimerase precursor; PFAM: Aldose 1-epimerase; PRIAM: Aldose 1-epimerase; SPTR: aldose 1-epimerase; PFAM: Aldose 1-epimerase YP_004253269.1 COGs: COG2826 Transposase and inactivated derivatives IS30 family; InterPro IPR001584; KEGG: bfs:BF2150 IS element; PFAM: Integrase, catalytic core; SPTR: uncharacterized protein; PFAM: Integrase core domain YP_004253270.1 COGs: COG0153 Galactokinase; HAMAP: Galactokinase; InterPro IPR000705: IPR019539: IPR006204: IPR013750; KEGG: cbe:Cbei_4419 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; PRIAM: Galactokinase; SPTR: Galactokinase; TIGRFAM: Galactokinase; PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase YP_004253271.1 COGs: COG4146 symporter; InterPro IPR019900: IPR001734; KEGG: fbc:FB2170_08124 sodium-glucose/galactose cotransporter; PFAM: Sodium/solute symporter; SPTR: Sodium-glucose/galactose cotransporter; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family YP_004253272.1 COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR014284: IPR009042: IPR007627: IPR007624: IPR 007630; KEGG: chu:CHU_1785 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004253273.1 HAMAP: 50S ribosomal protein L34; InterPro IPR000271; KEGG: coc:Coch_0279 ribosomal protein L34; PFAM: Ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: Ribosomal protein L34; manually curated; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type YP_004253274.1 KEGG: pdi:BDI_1653 hypothetical protein; SPTR: uncharacterized protein YP_004253275.1 KEGG: phe:Phep_2537 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region YP_004253276.1 COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: pdi:BDI_3172 phosphoribosylaminoimidazole carboxylase, PurE protein; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase, PurE protein; TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein YP_004253277.1 COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836; KEGG: bvu:BVU_1681 hypoxanthine guanine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: hypoxanthine guanine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase YP_004253278.1 COGs: COG0536 GTPase; HAMAP: GTPase obg; InterPro IPR014100: IPR005225: IPR006169: IPR002917; KEGG: pdi:BDI_1897 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain YP_004253280.1 COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; HAMAP: Phosphoribosyl-ATP pyrophosphohydrolase; Histidine biosynthesis bifunctional protein hisIE; InterPro IPR008179: IPR002496: IPR021130; KEGG: cpi:Cpin_1832 phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like; PRIAM: Phosphoribosyl-AMP cyclohydrolase., Phosphoribosyl-ATP diphosphatase; SPTR: Phosphoribosyl-ATP diphosphatase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase YP_004253281.1 COGs: COG0107 Imidazoleglycerol-phosphate synthase; HAMAP: Histidine biosynthesis, HisF; InterPro IPR004651: IPR006062; KEGG: rbi:RB2501_15124 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: Histidine biosynthesis, HisF; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit YP_004253282.1 COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; HAMAP:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; InterPro IPR006062; KEGG: cpi:Cpin_1830 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_004253283.1 COGs: COG0118 Glutamine amidotransferase; HAMAP: Imidazole glycerol phosphate synthase, subunit H; InterPro IPR010139: IPR000991; KEGG: fps:FP0956 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: uncharacterized protein; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_004253284.1 COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; InterPro IPR000807: IPR005954: IPR006543: IPR006549; KEGG: fba:FIC_00844 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: Imidazoleglycerol-phosphate dehydratase; PRIAM: Histidinol-phosphatase; SPTR: Histidine biosynthesis bifunctional protein HisB (Histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase); TIGRFAM: Histidinol-phosphatase; Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase; Imidazoleglycerol-phosphate dehydratase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase domain; histidinol-phosphatase YP_004253285.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; HAMAP: Histidinol-phosphate aminotransferase; InterPro IPR005861: IPR004839; KEGG: bvu:BVU_2363 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Histidinol-phosphate aminotransferase; TIGRFAM: Histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase YP_004253286.1 COGs: COG0141 Histidinol dehydrogenase; HAMAP: Histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131; KEGG: gfo:GFO_1763 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase YP_004253287.1 COGs: COG0040 ATP phosphoribosyltransferase; HAMAP: ATP phosphoribosyltransferase; Histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup; InterPro IPR020621: IPR013820: IPR013115; KEGG: zpr:ZPR_2381 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic domain; Histidine biosynthesis HisG, C-terminal; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; Histidine biosynthesis HisG, C-terminal; PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase YP_004253288.1 KEGG: afv:AFLA_072810 hypothetical protein; SPTR: uncharacterized protein YP_004253289.1 KEGG: cel:M28.2 hypothetical protein; SPTR: uncharacterized protein YP_004253290.1 KEGG: pdi:BDI_3446 hypothetical protein; SPTR: uncharacterized protein YP_004253291.1 KEGG: bth:BT_3777 hypothetical protein; SPTR: uncharacterized protein YP_004253292.1 KEGG: tgr:Tgr7_2412 redoxin domain protein; SPTR: Redoxin domain protein YP_004253293.1 KEGG: rbi:RB2501_10657 hypothetical protein; SPTR: uncharacterized protein YP_004253294.1 InterPro IPR007016; KEGG: bth:BT_3425 hypothetical protein; PFAM: O-antigen ligase-related; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat; O-Antigen ligase YP_004253295.1 KEGG: pmz:HMPREF0659_A6090 DNA-binding protein; SPTR: DNA-binding protein; TIGRFAM: DNA-binding protein, histone-like YP_004253296.1 InterPro IPR005902; KEGG: pmz:HMPREF0659_A6090 DNA-binding protein; SPTR: DNA-binding protein; TIGRFAM: DNA-binding protein, HU-related; PFAM: Bacterial DNA-binding protein; TIGRFAM: DNA-binding protein, histone-like YP_004253297.1 KEGG: hna:Hneap_1720 transcriptional regulator, LysR family; SPTR: Transcriptional regulator, LysR family YP_004253298.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: dfe:Dfer_5351 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004253299.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: gym:GYMC10_4919 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004253300.1 KEGG: gfo:GFO_1857 hypothetical protein; SPTR: uncharacterized protein YP_004253301.1 KEGG: pdi:BDI_2512 hypothetical protein; SPTR: uncharacterized protein YP_004253302.1 COGs: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); InterPro IPR002942; KEGG: pgn:PGN_0277 heat shock protein 15; PFAM: RNA-binding S4; SMART: RNA-binding S4; SPTR: uncharacterized protein; PFAM: S4 domain YP_004253303.1 COGs: COG0193 Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: bvu:BVU_3824 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase YP_004253304.1 COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc); HAMAP: Ribosomal protein L25; InterPro IPR001021: IPR020055; KEGG: bvu:BVU_3823 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25, N-terminal; SPTR: 50S ribosomal protein L25; TIGRFAM: Ribosomal protein L25; PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form YP_004253305.1 KEGG: bfr:BF0597 ferredoxin; SPTR: uncharacterized protein; PFAM: 4Fe-4S binding domain YP_004253306.1 COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: bvu:BVU_2623 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase YP_004253307.1 KEGG: tma:TM0113 XylU-related protein; SPTR: uncharacterized protein YP_004253308.1 COGs: COG0171 NAD synthase; InterPro IPR003694: IPR003010; KEGG: phe:Phep_0411 NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: NAD(+) synthase (glutamine-hydrolyzing); SPTR: NAD+ synthetase; TIGRFAM: NAD+ synthase; PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase YP_004253309.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808; KEGG: bfs:BF0954 FNR family transcriptional regulator protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: CRP family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain YP_004253310.1 KEGG: tml:GSTUM_00011557001 hypothetical protein; SPTR: uncharacterized protein YP_004253311.1 KEGG: hch:HCH_01525 hypothetical protein; SPTR: uncharacterized protein YP_004253312.1 KEGG: cel:Y102A5C.4 hypothetical protein; SPTR: uncharacterized protein YP_004253313.1 KEGG: cps:CPS_2377 glycosy hydrolase; SPTR: uncharacterized protein YP_004253314.1 COGs: COG1284 conserved hypothetical protein; InterPro IPR003740: IPR019264; KEGG: bvu:BVU_1148 hypothetical protein; PFAM: Protein of unknown function DUF2179; Protein of unknown function DUF161; SPTR: YitT family protein; manually curated; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179) YP_004253315.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; HAMAP: Glutaminyl-tRNA synthetase; InterPro IPR004514: IPR020058: IPR020059; KEGG: rbi:RB2501_06855 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; PRIAM: Glutamine--tRNA ligase; SPTR: Glutaminyl-tRNA synthetase; TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase YP_004253316.1 KEGG: bvu:BVU_2309 hypothetical protein; SPTR: uncharacterized protein YP_004253317.1 COGs: COG4623 soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; InterPro IPR001638: IPR008258; KEGG: cts:Ctha_0374 lytic transglycosylase catalytic; PFAM: Extracellular solute-binding protein, family 3; Lytic transglycosylase-like, catalytic; SMART: Extracellular solute-binding protein, family 3; SPTR: Lytic transglycosylase catalytic; PFAM: Transglycosylase SLT domain; Bacterial extracellular solute-binding proteins, family 3 YP_004253318.1 KEGG: bfr:BF3744 hypothetical protein; SPTR: uncharacterized protein YP_004253319.1 COGs: COG0370 Fe2+ transport system protein B; InterProIPR005225: IPR003373: IPR007167: IPR002917: IPR 011619: IPR011642: IPR011640; KEGG: pdi:BDI_1461 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Ferrous iron transporter, FeoA subunit; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; SPTR: Ferrous iron transporter B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: FeoA domain; Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain YP_004253320.1 KEGG: mdo:100016673 similar to GTPase, IMAP family member 4; SPTR: Resistance protein LM17 YP_004253321.1 COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: pdi:BDI_1699 Na+/H+ antiporter; PFAM: Cation/H+ exchanger; SPTR: Na+/H+ antiporter; PFAM: Universal stress protein family; Sodium/hydrogen exchanger family YP_004253322.1 COGs: COG1470 membrane protein; KEGG: bth:BT_0924 hypothetical protein; SPTR: uncharacterized protein; PFAM: NPCBM-associated, NEW3 domain of alpha-galactosidase YP_004253323.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: bth:BT_0925 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: ABC transporter YP_004253324.1 COGs: COG1277 ABC-type transport system involved in multi-copper enzyme maturation permease component; KEGG: bth:BT_0926 ABC-type transport, permease; SPTR: uncharacterized protein; manually curated YP_004253325.1 COGs: COG0104 Adenylosuccinate synthase; HAMAP: Adenylosuccinate synthetase; InterPro IPR001114; KEGG: pdi:BDI_3782 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: Adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase YP_004253326.1 COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: fbc:FB2170_09321 ferric uptake regulation protein; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulation protein (Ferric uptake regulator); PFAM: Ferric uptake regulator family YP_004253327.1 COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR003607: IPR004811: IPR006674: IPR007685: IPR 004095: IPR002912; KEGG: bfs:BF0692 RelA/SpoT GTP pyrophosphokinase; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD subdomain; TGS; Amino acid-binding ACT; PRIAM: GTP diphosphokinase; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: GTP pyrophosphokinase; TIGRFAM: RelA/SpoT protein; PFAM: HD domain; Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_004253328.1 COGs: COG0796 Glutamate racemase; HAMAP: Glutamate racemase; InterPro IPR004391: IPR015942; KEGG: bfs:BF0446 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: Glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase YP_004253329.1 InterPro IPR005632; KEGG: cpi:Cpin_1054 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like) YP_004253330.1 COGs: COG2825 Outer membrane protein; InterPro IPR005632; KEGG: cpi:Cpin_1053 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like) YP_004253331.1 COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474: IPR010827: IPR000184; KEGG: pdi:BDI_3699 outer membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein YP_004253332.1 COGs: COG0020 Undecaprenyl pyrophosphate synthase; HAMAP:Di-trans-poly-cis-decaprenylcistransferase-li ke; InterPro IPR001441; KEGG: bth:BT_3726 undecaprenyl pyrophosphate synthase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: uncharacterized protein; TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like; PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_004253333.1 COGs: COG0061 sugar kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; InterPro IPR002504; KEGG: fps:FP2093 inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD kinase YP_004253334.1 InterPro IPR000644; KEGG: phe:Phep_0982 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; SPTR: uncharacterized protein; PFAM: CBS domain YP_004253335.1 KEGG: fba:FIC_00923 hypothetical protein; SPTR: uncharacterized protein YP_004253336.1 KEGG: coc:Coch_1049 NAD metabolism ATPase/kinase-like protein; SPTR: uncharacterized protein YP_004253337.1 COGs: COG2035 membrane protein; InterPro IPR007163; KEGG: cts:Ctha_1490 protein of unknown function DUF368; PFAM: Protein of unknown function DUF368; SPTR: Predicted membrane protein; PFAM: Domain of unknown function (DUF368) YP_004253338.1 COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708: IPR006151; KEGG: bvu:BVU_2541 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: Shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase YP_004253339.1 COGs: COG4231 Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits; InterPro IPR011766; KEGG: pgi:PG0675 indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Indolepyruvate ferredoxin oxidoreductase; SPTR: Indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit YP_004253340.1 COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: pgn:PGN_0709 indolepyruvate oxidoreductase subunit beta; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; PRIAM: Indolepyruvate ferredoxin oxidoreductase; SPTR: Indolepyruvate ferredoxin oxidoreductase, beta subunit; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, beta subunit YP_004253341.1 COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: pgn:PGN_0801 probable electron transfer flavoprotein beta subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein, beta subunit; PFAM: Electron transfer flavoprotein domain YP_004253342.1 COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730: IPR014731; KEGG: pgi:PG0776 electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain YP_004253343.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: pdi:BDI_0461 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase C terminal; Acyl-CoA dehydrogenase, N-terminal domain YP_004253344.1 KEGG: pdi:BDI_3091 hypothetical protein; SPTR: uncharacterized protein YP_004253345.1 COGs: COG0793 Periplasmic protease; InterPro IPR011659: IPR005151; KEGG: bfs:BF3752 exported peptidase; PFAM: Peptidase S41; WD40-like Beta Propeller; SPTR: uncharacterized protein; PFAM: WD40-like Beta Propeller Repeat; Peptidase S41 YP_004253346.1 COGs: COG2502 Asparagine synthetase A; HAMAP: Aspartate--ammonia ligase; InterPro IPR004618; KEGG: pru:PRU_1711 aspartate--ammonia ligase; PFAM: Aspartate--ammonia ligase; PRIAM: Aspartate--ammonia ligase; SPTR: Aspartate-ammonia ligase; TIGRFAM: Aspartate--ammonia ligase; PFAM: Aspartate-ammonia ligase; TIGRFAM: aspartate--ammonia ligase, AsnA-type YP_004253347.1 COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127; KEGG: bth:BT_3249 zinc ABC transporter, zinc-binding protein; PFAM: ABC transporter metal-binding lipoprotein; SPTR: zinc ABC transporter, zinc-binding protein; PFAM: Periplasmic solute binding protein family YP_004253348.1 COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003593: IPR003439; KEGG: bth:BT_3248 metal ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Cation ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004253349.1 COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: pdi:BDI_3148 zinc ABC transporter permease; PFAM: ABC-3; SPTR: uncharacterized protein; PFAM: ABC 3 transport family YP_004253350.1 COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258: IPR013027: IPR004099; KEGG: zpr:ZPR_1874 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase YP_004253351.1 COGs: COG3579 Aminopeptidase C; InterPro IPR004134; KEGG: bfs:BF2064 aminopeptidase; PFAM: Peptidase C1B, bleomycin hydrolase; PRIAM: Bleomycin hydrolase; SPTR: uncharacterized protein; PFAM: Peptidase C1-like family YP_004253352.1 KEGG: ptm:GSPATT00034372001 hypothetical protein; SPTR: uncharacterized protein YP_004253353.1 COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; InterPro IPR003526; KEGG: bfs:BF3780 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_004253354.1 COGs: COG1262 conserved hypothetical protein; InterPro IPR019865: IPR005532; KEGG: cpi:Cpin_1181 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR: membrane protein; TIGRFAM: Gliding motility-associated lipoprotein GldJ; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldJ YP_004253355.1 COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR005863: IPR000713: IPR013221: IPR004101; KEGG: pdi:BDI_3366 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-D -alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_004253356.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bfs:BF2964 glycosyltransferase; PFAM: Glycosyl transferase, family 2; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: glycosyltransferase; PFAM: Glycosyl transferase 2 YP_004253357.1 COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680; KEGG: phe:Phep_3229 dihydroorotase; PFAM: Amidohydrolase 1; PRIAM: Allantoinase; SPTR: Amidohydrolase; PFAM: Amidohydrolase; TIGRFAM: dihydroorotase, multifunctional complex type YP_004253358.1 KEGG: phe:Phep_4030 hypothetical protein; SPTR: uncharacterized protein YP_004253359.1 COGs: COG0151 Phosphoribosylamine-glycine ligase; HAMAP: Phosphoribosylglycinamide synthetase; InterPro IPR000115: IPR020562: IPR020561: IPR020560; KEGG: pmz:HMPREF0659_A6752 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: uncharacterized protein; TIGRFAM: Phosphoribosylglycinamide synthetase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase YP_004253360.1 COGs: COG5587 conserved hypothetical protein; InterPro IPR012808; KEGG: pdi:BDI_3219 hypothetical protein; PFAM: Conserved hypothetical protein CHP02453; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02453; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: conserved hypothetical protein TIGR02453 YP_004253361.1 KEGG: pgn:PGN_0746 hypothetical protein; SPTR: uncharacterized protein YP_004253362.1 COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: phe:Phep_0242 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD; PFAM: PKD domain YP_004253363.1 InterPro IPR019861; KEGG: cpi:Cpin_6913 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein YP_004253364.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003018: IPR003661: IPR003594: IPR000014; KEGG: bth:BT_4057 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; SPTR: uncharacterized protein; TIGRFAM: PAS; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: PAS domain S-box YP_004253365.1 COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: pdi:BDI_1628 glucokinase; PFAM: ROK; SPTR: Transcriptional regulator/sugar kinase; PFAM: ROK family YP_004253366.1 KEGG: pdi:BDI_3554 hypothetical protein; SPTR: Membrane protein; PFAM: Protein of unknown function (DUF2721) YP_004253367.1 COGs: COG0364 Glucose-6-phosphate 1-dehydrogenase; InterPro IPR001282; KEGG: pdi:BDI_0647 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase; PRIAM: Glucose-6-phosphate dehydrogenase; SPTR: Glucose-6-phosphate 1-dehydrogenase; TIGRFAM: Glucose-6-phosphate dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal domain; Glucose-6-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glucose-6-phosphate 1-dehydrogenase YP_004253368.1 COGs: COG0362 6-phosphogluconate dehydrogenase; InterPro IPR006113: IPR006115: IPR006114; KEGG: pdi:BDI_0646 6-phosphogluconate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding; PRIAM: Phosphogluconate dehydrogenase (decarboxylating); SPTR: 6-phosphogluconate dehydrogenase, decarboxylating; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase, C-terminal domain; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating YP_004253369.1 COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593: IPR017730: IPR004176: IPR003959: IPR 013093: IPR019489; KEGG: bfs:BF1172 heat shock ClpB protein; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: heat shock ClpB protein; TIGRFAM: Chaperonin ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB YP_004253371.1 KEGG: gfo:GFO_1647 hypothetical protein; SPTR: uncharacterized protein YP_004253372.1 COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: bvu:BVU_3611 16S ribosomal RNA methyltransferase RsmE; PFAM: Ribosomal RNA small subunit methyltransferase E; SPTR: uncharacterized protein; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family YP_004253373.1 KEGG: bth:BT_2769 serine/threonine-protein kinase PknB; SPTR: serine/threonine-protein kinase pknB YP_004253374.1 KEGG: bth:BT_2769 serine/threonine-protein kinase PknB; SPTR: serine/threonine-protein kinase pknB YP_004253375.1 InterPro IPR015032; KEGG: cph:Cpha266_0160 TPR repeat-containing protein; PFAM: MTH538 TIR-like domain; SPTR: TPR repeat-containing protein; PFAM: MTH538 TIR-like domain (DUF1863) YP_004253376.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR005225: IPR000795: IPR004161: IPR005517: IPR 000640; KEGG: pdi:BDI_3765 elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Translation elongation factor G; TIGRFAM: Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004253377.1 COGs: COG2738 Zn-dependent protease; InterPro IPR007395; KEGG: bvu:BVU_0371 hypothetical protein; PFAM: Peptidase, membrane zinc metallopeptidase, SPTR: uncharacterized protein; PFAM: neutral zinc metallopeptidase YP_004253378.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bth:BT_3278 anti-sigma factor; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004253379.1 InterPro IPR012910: IPR000531; KEGG: bth:BT_3279 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: SusC homolog; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004253380.1 InterPro IPR012944; KEGG: cpi:Cpin_3049 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; PFAM: SusD family YP_004253381.1 KEGG: ptm:GSPATT00022838001 hypothetical protein; SPTR: Chromosome undetermined scaffold_76, whole genome shotgun sequence. YP_004253382.1 InterPro IPR011871; KEGG: paa:Paes_1157 hypothetical protein; SPTR: uncharacterized protein; PFAM: Fibrobacter succinogenes major domain (Fib_succ_major); TIGRFAM: Fibrobacter succinogenes major paralogous domain YP_004253383.1 InterPro IPR013766: IPR000866; KEGG: aga:AgaP_AGAP012940 AGAP012940-PA; PFAM: Thioredoxin domain; Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: Thioredoxin YP_004253384.1 KEGG: hch:HCH_01837 fibronectin type III domain-containing protein; SPTR: uncharacterized protein; PFAM: IgA Peptidase M64 YP_004253385.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR000792: IPR014284: IPR007627: IPR013249; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004253386.1 COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: bvu:BVU_1184 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase YP_004253387.1 COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: bfr:BF4205 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; SPTR: uncharacterized protein; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YP_004253388.1 COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; HAMAP: Methylthioribose-1-phosphate isomerase; InterPro IPR005251: IPR011559: IPR000649; KEGG: pdi:BDI_2280 methylthioribose-1-phosphate isomerase; PFAM: Initiation factor 2B related; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; SPTR: uncharacterized protein; TIGRFAM: translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase YP_004253389.1 InterPro IPR008761; KEGG: bth:BT_2436 secreted tripeptidyl aminopeptidase; PFAM: Peptidase S37, tripeptidyl aminopeptidase; SPTR: uncharacterized protein; PFAM: PS-10 peptidase S37 YP_004253390.1 KEGG: mlo:mll1272 hypothetical protein; SPTR: uncharacterized protein YP_004253391.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: bth:BT_3804 transport protein, multidrug efflux protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: transport protein, multidrug efflux protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004253392.1 COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR006402: IPR005834; KEGG: ppr:PBPRB0932 hypothetical protein; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: uncharacterized protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_004253393.1 InterPro IPR012910: IPR000531; KEGG: pdi:BDI_3481 TonB dependent outer membrane protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain YP_004253394.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: pdi:BDI_3394 hypothetical protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding domain protein; PFAM: Cyclic nucleotide-binding domain YP_004253395.1 COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104: IPR006102; KEGG: bth:BT_3513 beta-galactosidase; PFAM: Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; SPTR: Beta-galactosidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain YP_004253396.1 COGs: COG2143 Thioredoxin-related protein; InterPro IPR013766: IPR013740; KEGG: bth:BT_3069 disulphide-isomerase; PFAM: Redoxin; Thioredoxin domain; SPTR: uncharacterized protein; PFAM: Thioredoxin; Redoxin YP_004253397.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004253398.1 KEGG: cpi:Cpin_3290 hypothetical protein; SPTR: uncharacterized protein YP_004253399.1 KEGG: cpi:Cpin_3289 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004253400.1 InterPro IPR011662: IPR012910; KEGG: cpi:Cpin_3288 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SPTR: outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004253401.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bth:BT_3270 anti-sigma factor; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein YP_004253402.1 InterPro IPR012910; KEGG: srm:SRM_00930 conserved hypothetical protein, outer membrane, containing TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain YP_004253403.1 KEGG: sfr:Sfri_0359 TPR repeat-containing protein; SPTR: uncharacterized protein YP_004253404.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004253405.1 KEGG: bfs:BF0058 hypothetical protein; SPTR: uncharacterized protein YP_004253406.1 COGs: COG4642 conserved hypothetical protein; InterPro IPR000157: IPR003409; KEGG: bvu:BVU_3326 phosphatidylinositol-4-phosphate 5-kinase; PFAM: Toll-Interleukin receptor; MORN motif; SMART: Toll-Interleukin receptor; MORN motif; SPTR: MORN repeat protein; PFAM: MORN repeat; TIR domain YP_004253407.1 COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR003593; KEGG: pdi:BDI_1708 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004253408.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423: IPR010131; KEGG: bfs:BF2945 puter membrane protein; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family YP_004253409.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036: IPR004764; KEGG: pdi:BDI_1492 aminoglycoside efflux pump; PFAM: Acriflavin resistance protein; SPTR: uncharacterized protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004253410.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bfs:BF2947 acriflavine resistance protein E precursor; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004253411.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423: IPR010131; KEGG: bth:BT_0884 outer membrane efflux protein OprM precursor; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family YP_004253412.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bfs:BF2476 transport-related protein; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004253413.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036: IPR004764; KEGG: bth:BT_0886 cation efflux pump; PFAM: Acriflavin resistance protein; SPTR: cation efflux pump; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004253414.1 KEGG: bvu:BVU_4011 transposase; SPTR: uncharacterized protein YP_004253415.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004253416.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bth:BT_3083 ATPase; SPTR: uncharacterized protein YP_004253417.1 KEGG: phe:Phep_2462 hypothetical protein; SPTR: uncharacterized protein YP_004253418.1 KEGG: cat:CA2559_00400 hypothetical protein; SPTR: uncharacterized protein YP_004253419.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: bvu:BVU_0772 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; manually curated; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004253420.1 KEGG: bvu:BVU_0773 hypothetical protein; SPTR: uncharacterized protein YP_004253421.1 KEGG: fbc:FB2170_13763 hypothetical protein; SPTR: uncharacterized protein YP_004253422.1 COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR008756: IPR006260; KEGG: pdi:BDI_3215 TonB; PFAM: TonB, C-terminal; Peptidase M56, BlaR1; SPTR: TonB-dependent receptor; TIGRFAM: TonB, C-terminal; PFAM: BlaR1 peptidase M56; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004253423.1 COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: bfs:BF3766 hypothetical protein; PFAM: Penicillinase repressor; SPTR: Transcriptional regulator; PFAM: Penicillinase repressor YP_004253424.1 COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544: IPR005786; KEGG: pdi:BDI_1775 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase II; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II YP_004253425.1 InterPro IPR018543: IPR019500; KEGG: chu:CHU_2431 dipeptidyl-peptidase 7; PFAM: Peptidase S46; Adhesion protein FadA; SPTR: uncharacterized protein; PFAM: Peptidase S46 YP_004253426.1 COGs: COG0820 Fe-S-cluster redox enzyme; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; InterPro IPR007197: IPR004383; KEGG: dfe:Dfer_4731 radical SAM enzyme, Cfr family; PFAM: Radical SAM; SPTR: Ribosomal RNA large subunit methyltransferase N; TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family YP_004253427.1 COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097: IPR006096; KEGG: pdi:BDI_3809 glutamate dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; PRIAM: Glutamate dehydrogenase (NADP(+)); SPTR: Glutamate dehydrogenase, NAD-specific; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_004253428.1 InterPro IPR002559; KEGG: pgi:PG1061 ISPg6, transposase; PFAM: Transposase, IS4-like; SPTR: ISPg6, transposase; PFAM: Transposase DDE domain YP_004253429.1 KEGG: bth:BT_3557 transposase; SPTR: uncharacterized protein YP_004253431.1 KEGG: zpr:ZPR_2600 membrane protein; SPTR: Conserved hypothetical transmembrane protein; PFAM: Protein of unknown function (DUF3307) YP_004253432.1 KEGG: csa:Csal_1645 hypothetical protein; SPTR: uncharacterized protein YP_004253433.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: bth:BT_3151 hypothetical protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004253434.1 KEGG: str:Sterm_2226 hypothetical protein; SPTR: Lipoprotein YP_004253435.1 COGs: COG5361 conserved hypothetical protein; InterPro IPR010679: IPR010621; KEGG: ols:Olsu_0240 protein of unknown function DUF1254; PFAM: Protein of unknown function DUF1214; Protein of unknown function DUF1254; SPTR: Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF1214); Protein of unknown function (DUF1254) YP_004253436.1 InterPro IPR002559; KEGG: pgi:PG1061 ISPg6, transposase; PFAM: Transposase, IS4-like; SPTR: ISPg6, transposase; PFAM: Transposase DDE domain YP_004253437.1 COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; HAMAP: Glucosamine-6-phosphate deaminase; InterPro IPR006148: IPR003737: IPR018322; KEGG: rbi:RB2501_01555 glucosamine-6-phosphate deaminase-like protein; PFAM: Glucosamine/galactosamine-6-phosphate isomerase; N-acetylglucosaminyl phosphatidylinositol deacetylase; PRIAM: Glucosamine-6-phosphate deaminase; SPTR: Glucosamine-6-phosphate deaminase; TIGRFAM: Glucosamine-6-phosphate isomerase, subgroup; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; GlcNAc-PI de-N-acetylase; TIGRFAM: glucosamine-6-phosphate isomerase YP_004253438.1 COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); KEGG: cpi:Cpin_1917 hypothetical protein; SPTR: uncharacterized protein; PFAM: Nucleotidyl transferase YP_004253439.1 InterPro IPR006121; KEGG: bth:BT_1092 heavy-metal binding protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Heavy-metal binding protein; PFAM: Heavy-metal-associated domain YP_004253440.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR000531; KEGG: bfr:BF2030 TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain YP_004253441.1 KEGG: lbc:LACBIDRAFT_298015 hypothetical protein; SPTR: MGF 505-9R protein YP_004253442.1 InterPro IPR000866; KEGG: pdi:BDI_2759 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Peroxiredoxin; PFAM: AhpC/TSA family YP_004253443.1 COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: rbi:RB2501_07440 UDP-2,3-diacylglucosamine hydrolase; PFAM: Metallophosphoesterase; SPTR: Ser/Thr protein phosphatase YP_004253444.1 COGs: COG0606 ATPase with chaperone activity; InterPro IPR000523: IPR004482: IPR003593; KEGG: bfs:BF4282 hypothetical protein; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: Magnesium chelatase subunit ChlI; TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein YP_004253445.1 COGs: COG0221 Inorganic pyrophosphatase; InterPro IPR008162; KEGG: nde:NIDE3643 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: Inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase YP_004253446.1 COGs: COG0279 Phosphoheptose isomerase; HAMAP: Phosphoheptose isomerase; InterPro IPR001347: IPR004515: IPR020620; KEGG: aha:AHA_1574 phosphoheptose isomerase; PFAM: Sugar isomerase (SIS); SPTR: Phosphoheptose isomerase; TIGRFAM: Phosphoheptose isomerase, subgroup; PFAM: SIS domain; TIGRFAM: phosphoheptose isomerase YP_004253447.1 COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: chu:CHU_3761 redox-sensitive transcriptional activator OxyR; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; SPTR: Redox-sensitive transcriptional activator OxyR, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain YP_004253448.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; HAMAP: Chaperone DnaJ; InterPro IPR001623: IPR001305: IPR002939: IPR012724; KEGG: pdi:BDI_1240 chaperone protein DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich domain; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone protein dnaJ; TIGRFAM: Chaperone DnaJ; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ YP_004253449.1 COGs: COG0576 Molecular chaperone GrpE (heat shock protein); HAMAP: GrpE nucleotide exchange factor; InterPro IPR000740; KEGG: bth:BT_1243 GrpE protein (HSP-70 cofactor); PFAM: GrpE nucleotide exchange factor; SPTR: Protein grpE; PFAM: GrpE YP_004253450.1 COGs: COG2003 DNA repair protein; InterPro IPR001405; KEGG: cat:CA2559_05605 DNA repair protein; PFAM: Uncharacterised protein family, RadC-like; SPTR: DNA repair protein; TIGRFAM: Uncharacterised protein family, RadC-like; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc YP_004253451.1 HAMAP: Ribosomal protein S20; InterPro IPR002583; KEGG: pru:PRU_2339 30S ribosomal protein S20; PFAM: Ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: Ribosomal protein S20; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20 YP_004253452.1 COGs: COG0313 methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase I; InterPro IPR000878: IPR008189; KEGG: pru:PRU_1869 hypothetical protein; PFAM: Tetrapyrrole methylase; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0011; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family YP_004253453.1 KEGG: chu:CHU_3265 hypothetical protein; SPTR: uncharacterized protein YP_004253454.1 KEGG: gfo:GFO_2924 hypothetical protein; SPTR: uncharacterized protein YP_004253455.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: sru:SRU_2720 acylaminoacyl-peptidase; SPTR: uncharacterized protein; PFAM: Prolyl oligopeptidase YP_004253456.1 InterPro IPR000866; KEGG: cpi:Cpin_3292 redoxin domain protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: AhpC/TSA family YP_004253457.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004253458.1 KEGG: cpi:Cpin_5145 hypothetical protein; SPTR: uncharacterized protein YP_004253459.1 KEGG: cpi:Cpin_5146 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004253460.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662: IPR012910; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004253461.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004253462.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004253463.1 COGs: COG0502 Biotin synthase; InterPro IPR007197: IPR006638; KEGG: aar:Acear_2037 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily YP_004253464.1 COGs: COG1280 threonine efflux protein; InterPro IPR001123; KEGG: bmd:BMD_1530 LysE family translocator protein; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Lysine exporter protein (LYSE/YGGA); PFAM: LysE type translocator YP_004253465.1 COGs: COG3176 hemolysin; InterPro IPR002123; KEGG: phe:Phep_0834 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; PFAM: Acyltransferase YP_004253466.1 InterPro IPR007922; KEGG: phe:Phep_0535 protein of unknown function DUF721; PFAM: Protein of unknown function DUF721; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF721) YP_004253467.1 COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); HAMAP: DNA replication and repair protein recF; InterPro IPR003395: IPR001238; KEGG: bvu:BVU_2620 DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA replication and repair protein recF; TIGRFAM: DNA-binding, RecF; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein YP_004253468.1 InterPro IPR019734; KEGG: cpi:Cpin_5454 tetratricopeptide domain protein; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide domain protein YP_004253469.1 InterPro IPR019734; KEGG: tet:TTHERM_00155290 hypothetical protein; SPTR: uncharacterized protein YP_004253470.1 KEGG: phe:Phep_3247 hypothetical protein; SPTR: uncharacterized protein YP_004253471.1 InterPro IPR013766: IPR013740; KEGG: bvu:BVU_1977 thiol-disulfide oxidoreductase; PFAM: Redoxin; Thioredoxin domain; SPTR: thiol-disulfide oxidoreductase; PFAM: Thioredoxin; AhpC/TSA family YP_004253472.1 KEGG: bth:BT_3274 hypothetical protein; SPTR: uncharacterized protein YP_004253473.1 COGs: COG5421 Transposase; InterPro IPR002559; KEGG: cph:Cpha266_0325 transposase, IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family; PFAM: Transposase DDE domain YP_004253474.1 COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: bfs:BF4240 2-oxoglutarate ferredoxin oxidoreductase subunit beta; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: uncharacterized protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004253475.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR019752: IPR002880; KEGG: fbc:FB2170_07974 2-oxoglutarate synthase subunit KorA; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; PRIAM: 2-oxoglutarate synthase; SPTR: uncharacterized protein; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit YP_004253476.1 COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: dal:Dalk_1834 MscS mechanosensitive ion channel; PFAM: Mechanosensitive ion channel MscS; SPTR: MscS Mechanosensitive ion channel; PFAM: Mechanosensitive ion channel YP_004253477.1 COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523: IPR004488; KEGG: dat:HRM2_38430 CorA2; PFAM: Mg2+ transporter protein, CorA-like; SPTR: CorA2; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) YP_004253478.1 COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR020811: IPR020810: IPR000941; KEGG: pdi:BDI_3395 phosphopyruvate hydratase; PFAM: Enolase, C-terminal; Enolase, N-terminal; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: Enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase YP_004253479.1 KEGG: bfs:BF2100 hypothetical protein; SPTR: uncharacterized protein YP_004253480.1 KEGG: bfs:BF4296 hypothetical protein; SPTR: uncharacterized protein YP_004253481.1 KEGG: bfs:BF4296 hypothetical protein; SPTR: uncharacterized protein YP_004253482.1 COGs: COG0203 Ribosomal protein L17; HAMAP: Ribosomal protein L17; InterPro IPR000456; KEGG: phe:Phep_0630 ribosomal protein L17; PFAM: Ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17 YP_004253483.1 COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterProIPR011261: IPR011262: IPR011260: IPR011773: IPR 011263; KEGG: pdi:BDI_2354 DNA-directed RNA polymerase subunit alpha; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; SPTR: uncharacterized protein; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type YP_004253484.1 COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR001912: IPR002942: IPR005709; KEGG: pgn:PGN_1842 30S ribosomal protein S4; PFAM: Ribosomal protein S4; RNA-binding S4; SMART: RNA-binding S4; SPTR: 30S ribosomal protein S4; TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type YP_004253485.1 COGs: COG0100 Ribosomal protein S11; InterPro IPR001971: IPR019981; KEGG: bvu:BVU_0782 30S ribosomal protein S11; PFAM: Ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11 YP_004253486.1 COGs: COG0099 Ribosomal protein S13; InterPro IPR001892: IPR019980; KEGG: pdi:BDI_2357 30S ribosomal protein S13; PFAM: Ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13 YP_004253487.1 HAMAP: Ribosomal protein L36; InterPro IPR000473; KEGG: fba:FIC_01999 LSU ribosomal protein L36p; PFAM: Ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: Ribosomal protein L36; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type YP_004253488.1 COGs: COG0361 Translation initiation factor 1 (IF-1); HAMAP: Translation initiation factor IF-1; InterPro IPR006196: IPR004368; KEGG: bfs:BF3981 translation initiation factor IF-1; PFAM: S1, IF1 type; SPTR: Translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1 YP_004253489.1 COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994: IPR002467; KEGG: pdi:BDI_2359 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Metallopeptidase M24; TIGRFAM: methionine aminopeptidase, type I YP_004253490.1 COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: pdi:BDI_2360 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase, SecY subunit; TIGRFAM: SecY protein; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit YP_004253491.1 COGs: COG0200 Ribosomal protein L15; InterPro IPR005749; KEGG: bvu:BVU_0786 50S ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle YP_004253492.1 InterPro IPR000517: IPR005996; KEGG: vpr:Vpar_1476 ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e, conserved region; SPTR: 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle YP_004253493.1 COGs: COG0098 Ribosomal protein S5; InterPro IPR013810: IPR005324: IPR005712; KEGG: pru:PRU_2098 30S ribosomal protein S5; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type YP_004253494.1 COGs: COG0256 Ribosomal protein L18; InterPro IPR005484: IPR004389; KEGG: coc:Coch_1163 ribosomal protein L18; PFAM: Ribosomal protein L18/L5; SPTR: 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type YP_004253495.1 COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR020040: IPR019906; KEGG: pdi:BDI_2365 50S ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type YP_004253496.1 COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: pru:PRU_2101 30S ribosomal protein S8; PFAM: Ribosomal protein S8; SPTR: Ribosomal protein S8; PFAM: Ribosomal protein S8 YP_004253497.1 COGs: COG0199 Ribosomal protein S14; HAMAP: 30S ribosomal protein S14; InterPro IPR001209; KEGG: pgn:PGN_1855 30S ribosomal protein S14; PFAM: Ribosomal protein S14; SPTR: 30S ribosomal protein S14; PFAM: Ribosomal protein S14p/S29e YP_004253498.1 COGs: COG0094 Ribosomal protein L5; KEGG: pdi:BDI_2368 50S ribosomal protein L5; SPTR: 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5 YP_004253499.1 COGs: COG0198 Ribosomal protein L24; InterPro IPR005824: IPR003256; KEGG: pdi:BDI_2369 50S ribosomal protein L24; PFAM: KOW; SMART: KOW; SPTR: 50S ribosomal protein L24; TIGRFAM: Ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle YP_004253500.1 COGs: COG0093 Ribosomal protein L14; InterPro IPR000218: IPR005745; KEGG: zpr:ZPR_3865 50S ribosomal protein L14; PFAM: Ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle YP_004253501.1 COGs: COG0186 Ribosomal protein S17; InterPro IPR000266: IPR019984; KEGG: bth:BT_2718 30S ribosomal protein S17; PFAM: Ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17 YP_004253502.1 InterPro IPR001854; KEGG: bth:BT_2719 50S ribosomal protein L29; PFAM: Ribosomal protein L29; SPTR: Ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29 YP_004253503.1 COGs: COG0197 Ribosomal protein L16/L10E; HAMAP: Ribosomal protein L16; InterPro IPR016180: IPR000114; KEGG: pdi:BDI_2373 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle YP_004253504.1 COGs: COG0092 Ribosomal protein S3; InterProIPR008282: IPR004044: IPR001351: IPR005704: IPR 004087; KEGG: bvu:BVU_0799 30S ribosomal protein S3; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; SMART: K Homology; SPTR: 30S ribosomal protein S3; TIGRFAM: Ribosomal protein S3, bacterial; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type YP_004253505.1 COGs: COG0091 Ribosomal protein L22; InterPro IPR001063: IPR005727; KEGG: coc:Coch_1152 50S ribosomal protein L22; PFAM: Ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; manually curated; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type YP_004253506.1 COGs: COG0185 Ribosomal protein S19; InterPro IPR002222: IPR005732; KEGG: bvu:BVU_0801 30S ribosomal protein S19; PFAM: Ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle YP_004253507.1 COGs: COG0090 Ribosomal protein L2; InterPro IPR002171: IPR005880; KEGG: bvu:BVU_0802 50S ribosomal protein L2; PFAM: Ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar YP_004253508.1 COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: bth:BT_2725 50S ribosomal protein L23; PFAM: Ribosomal protein L25/L23; SPTR: Ribosomal protein L23; PFAM: Ribosomal protein L23 YP_004253509.1 COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: zpr:ZPR_3874 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1 family YP_004253510.1 COGs: COG0087 Ribosomal protein L3; InterPro IPR000597: IPR019927; KEGG: bfs:BF4003 50S ribosomal protein L3; PFAM: Ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial YP_004253511.1 COGs: COG0051 Ribosomal protein S10; HAMAP: Ribosomal protein S10 subgroup; InterPro IPR001848: IPR005731; KEGG: bfs:BF4004 30S ribosomal protein S10; PFAM: Ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: Ribosomal protein S10 subgroup; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_004253512.1 COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795: IPR004161: IPR005517: IPR000640: IPR 004540: IPR005225; KEGG: pdi:BDI_2382 elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain YP_004253513.1 COGs: COG0049 Ribosomal protein S7; InterPro IPR000235: IPR005717; KEGG: pru:PRU_2132 30S ribosomal protein S7; PFAM: Ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle YP_004253514.1 COGs: COG0048 Ribosomal protein S12; InterPro IPR006032: IPR005679; KEGG: bvu:BVU_0809 30S ribosomal protein S12; PFAM: Ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle YP_004253515.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004253516.1 KEGG: cpi:Cpin_3290 hypothetical protein; SPTR: uncharacterized protein YP_004253517.1 KEGG: cpi:Cpin_3289 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004253518.1 KEGG: bth:BT_3557 transposase; SPTR: transposase YP_004253519.1 KEGG: bvu:BVU_4011 transposase; SPTR: uncharacterized protein; PFAM: Transposase domain (DUF772) YP_004253520.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_2250 FecR protein; PFAM: FecR protein; SPTR: FecR protein; PFAM: FecR protein YP_004253521.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004253522.1 InterPro IPR013766; KEGG: fba:FIC_01900 disulphide-isomerase; PFAM: Thioredoxin domain; SPTR: uncharacterized protein; PFAM: Thioredoxin YP_004253523.1 KEGG: cpi:Cpin_1100 hypothetical protein; SPTR: uncharacterized protein YP_004253524.1 KEGG: pmz:HMPREF0659_A5441 lipoprotein; SPTR: uncharacterized protein YP_004253525.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004253526.1 InterPro IPR011662: IPR012910; KEGG: cpi:Cpin_1097 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_004253527.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bth:BT_3270 anti-sigma factor; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004253528.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR000792; KEGG: bth:BT_3269 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004253529.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR013249: IPR014284: IPR014327; KEGG: pdi:BDI_1305 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004253530.1 KEGG: bth:BT_1491 hypothetical protein; SPTR: uncharacterized protein YP_004253531.1 InterPro IPR012910: IPR000531; KEGG: phe:Phep_0725 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_004253532.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004253533.1 InterPro IPR013766: IPR000866; KEGG: bth:BT_3069 disulphide-isomerase; PFAM: Thioredoxin domain; Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: Thioredoxin YP_004253534.1 COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterPro IPR002078: IPR002197: IPR003593; KEGG: pdi:BDI_0192 transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004253535.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR000792; KEGG: bth:BT_3269 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004253536.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: Sigma factor regulatory protein, FecR/PupR family; PFAM: FecR protein YP_004253537.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: bth:BT_3271 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004253538.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004253539.1 KEGG: cpi:Cpin_1099 hypothetical protein; SPTR: uncharacterized protein YP_004253540.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004253541.1 InterPro IPR000866; KEGG: cat:CA2559_02625 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; PFAM: AhpC/TSA family YP_004253542.1 InterPro IPR000866; KEGG: coc:Coch_0107 redoxin domain protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; PFAM: AhpC/TSA family YP_004253543.1 InterPro IPR000866; KEGG: cat:CA2559_02625 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: AhpC/TSA family YP_004253544.1 InterPro IPR010106; KEGG: ott:OTT_1446 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP01784; TIGRFAM: conserved hypothetical protein ( transposase or invertase) YP_004253545.1 KEGG: coc:Coch_0313 hypothetical protein; SPTR: uncharacterized protein YP_004253546.1 KEGG: coc:Coch_0314 hypothetical protein; SPTR: uncharacterized protein YP_004253547.1 InterPro IPR004692; KEGG: pdi:BDI_0195 preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase subunit SecG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_004253548.1 COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: Chaperonin Cpn10, subgroup; InterPro IPR020818: IPR001476; KEGG: cpi:Cpin_6246 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit YP_004253549.1 COGs: COG0459 Chaperonin GroEL (HSP60 family); HAMAP: Chaperonin Cpn60; InterPro IPR002423: IPR001844; KEGG: pdi:BDI_3787 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: Chaperonin Cpn60; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_004253550.1 KEGG: lel:LELG_04132 hypothetical protein; SPTR: Predicted protein YP_004253551.1 COGs: COG1283 Na+/phosphate symporter; InterPro IPR003841: IPR008170; KEGG: pdi:BDI_3154 Na+-dependent phosphate transporter; PFAM: Na/Pi-cotransporter; PhoU; SPTR: uncharacterized protein; PFAM: PhoU domain; Na+/Pi-cotransporter; TIGRFAM: Na/Pi-cotransporter YP_004253552.1 COGs: COG0423 Glycyl-tRNA synthetase (class II); InterPro IPR002314: IPR004154: IPR002315; KEGG: bvu:BVU_0207 glycyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; SPTR: Glycyl-tRNA synthetase; TIGRFAM: Glycyl-tRNA synthetase, alpha2 dimer; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type YP_004253553.1 KEGG: dre:80372 odorant receptor, family D, subfamily 111, member 8; SPTR: TetR family transcriptional regulator YP_004253554.1 KEGG: pdi:BDI_3446 hypothetical protein; SPTR: uncharacterized protein YP_004253555.1 KEGG: pdi:BDI_2699 ATP-dependent DNA helicase RecG; SPTR: uncharacterized protein YP_004253556.1 KEGG: fbc:FB2170_07010 hypothetical protein; SPTR: uncharacterized protein YP_004253557.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: cpi:Cpin_2741 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004253558.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: cpi:Cpin_2742 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: DNA-binding response regulator RprY; PFAM: Response regulator receiver domain YP_004253559.1 InterPro IPR003684; KEGG: pdi:BDI_1782 hypothetical protein; PFAM: Porin, alpha proteobacteria type; SPTR: uncharacterized protein; PFAM: Porin subfamily YP_004253560.1 COGs: COG0196 FAD synthase; InterPro IPR015864: IPR015865: IPR002606; KEGG: phe:Phep_3549 riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; PRIAM: FAD synthetase., Riboflavin kinase; SPTR: Riboflavin biosynthesis protein RibF; TIGRFAM: Riboflavin kinase/FAD synthetase; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase YP_004253561.1 InterPro IPR000788: IPR013344; KEGG: bvu:BVU_0003 ribonucleoside reductase; PFAM: Ribonucleotide reductase large subunit, C-terminal; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_004253562.1 COGs: COG0806 RimM protein required for 16S rRNA processing; HAMAP: 16S rRNA processing protein RimM; InterPro IPR007903: IPR011961; KEGG: sli:Slin_1385 16S rRNA processing protein RimM; PFAM: PRC-barrel; SPTR: Ribosome maturation factor rimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM YP_004253563.1 COGs: COG0228 Ribosomal protein S16; HAMAP: Ribosomal protein S16; InterPro IPR000307; KEGG: pdi:BDI_1709 30S ribosomal protein S16; PFAM: Ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16 YP_004253564.1 KEGG: bth:BT_3629 hypothetical protein; SPTR: uncharacterized protein YP_004253565.1 KEGG: bvu:BVU_2510 hypothetical protein; SPTR: Uncharacterized protein conserved in bacteria YP_004253566.1 KEGG: fps:FP1387 hypothetical protein; SPTR: uncharacterized protein YP_004253567.1 COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: pmz:HMPREF0659_A7003 peptidase families S8 and S53; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Subtilase domain protein; PFAM: Subtilase YP_004253568.1 InterPro IPR012910; KEGG: bvu:BVU_2506 outer membrane receptor protein; PFAM: TonB-dependent receptor, plug; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain YP_004253569.1 KEGG: bfs:BF3067 lipoprotein; SPTR: uncharacterized protein YP_004253570.1 KEGG: bvu:BVU_2508 hypothetical protein; SPTR: uncharacterized protein YP_004253571.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: bth:BT_3627 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter YP_004253572.1 KEGG: bth:BT_3626 hypothetical protein; SPTR: uncharacterized protein YP_004253573.1 KEGG: bth:BT_3625 hypothetical protein; SPTR: uncharacterized protein YP_004253574.1 COGs: COG2243 Precorrin-2 methylase; InterPro IPR000878: IPR006364; KEGG: bfs:BF2245 cobalamin synthesis related methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: uncharacterized protein; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-2 C20-methyltransferase YP_004253575.1 KEGG: cat:CA2559_02625 hypothetical protein; SPTR: uncharacterized protein YP_004253576.1 KEGG: xcv:XCV4444 hemagglutinin-related protein; SPTR: uncharacterized protein; PFAM: Calx-beta domain YP_004253577.1 KEGG: bur:Bcep18194_A5464 ATP-dependent helicase HrpA; SPTR: uncharacterized protein YP_004253578.1 InterPro IPR012944; KEGG: zpr:ZPR_4661 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: SusD family; PFAM: SusD family YP_004253579.1 InterPro IPR011662: IPR012910; KEGG: bth:BT_1552 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SPTR: outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_004253580.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0955 FecR protein; PFAM: FecR protein; SPTR: FecR protein; PFAM: FecR protein YP_004253581.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR007627: IPR013249: IPR014284: IPR014327: IPR 000792; KEGG: phe:Phep_0443 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004253582.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: sus:Acid_6658 peptidase S9 prolyl oligopeptidase; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; SPTR: Dipeptidyl peptidase IV (DPP IV) N-terminal region./Prolyl oligopeptidase; PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region YP_004253583.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: bfs:BF2246 exported periplasmic protein; PFAM: Periplasmic binding protein; SPTR: exported periplasmic protein; PFAM: Periplasmic binding protein YP_004253584.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: pdi:BDI_1018 iron(III) ABC transporter permease; PFAM: Bacterial transport system permease; SPTR: uncharacterized protein; PFAM: FecCD transport family YP_004253585.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439: IPR003593; KEGG: bfs:BF2248 iron transport related ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: ABC transporter YP_004253586.1 COGs: COG0716 Flavodoxins; InterPro IPR008254: IPR010086; KEGG: pgn:PGN_1791 flavodoxin FldA; PFAM: Flavodoxin/nitric oxide synthase; SPTR: uncharacterized protein; TIGRFAM: Flavodoxin, long chain; PFAM: Flavodoxin; TIGRFAM: flavodoxin, long chain; flavodoxin, short chain YP_004253587.1 InterPro IPR018594; KEGG: bfs:BF2690 hypothetical protein; PFAM: Domain of unknown function DUF2023; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2023) YP_004253588.1 COGs: COG1903 Cobalamin biosynthesis protein CbiD; HAMAP: Cobalamin (vitamin B12) biosynthesis CbiD; InterPro IPR003723: IPR002748; KEGG: pdi:BDI_1064 precorrin-6X reductase/cobalamin biosynthetic protein CbiD; PFAM: Cobalamin (vitamin B12) biosynthesis CbiD; Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; SPTR: Precorrin-6X reductase/cobalamin biosynthetic protein CbiD; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiD; PFAM: Precorrin-6x reductase CbiJ/CobK; CbiD; TIGRFAM: precorrin-6x reductase; cobalamin biosynthesis protein CbiD YP_004253589.1 KEGG: swo:Swol_2192 hypothetical protein; SPTR: uncharacterized protein; PFAM: Transposase IS200 like YP_004253590.1 COGs: COG2875 Precorrin-4 methylase; InterPro IPR002750: IPR000878: IPR006362; KEGG: bvu:BVU_3081 precorrin-4 C11-methyltransferase; PFAM: Cobalamin (vitamin B12) biosynthesis CbiG, core; Tetrapyrrole methylase; PRIAM: Precorrin-4 C(11)-methyltransferase; SPTR: Precorrin-4 C11-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; PFAM: Cobalamin biosynthesis central region; Cobalamin synthesis G C-terminus; Tetrapyrrole (Corrin/Porphyrin) Methylases; Cobalamin synthesis G N-terminal; TIGRFAM: precorrin-4 C11-methyltransferase YP_004253591.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587: IPR000994; KEGG: pdi:BDI_0913 Xaa-Pro dipeptidase; PFAM: Peptidase M24, structural domain; Creatinase; SPTR: uncharacterized protein; PFAM: Metallopeptidase M24; Creatinase/Prolidase N-terminal domain YP_004253592.1 COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; InterPro IPR001046; KEGG: bth:BT_0629 Mn2+ and Fe2+ transport protein; PFAM: Natural resistance-associated macrophage protein; SPTR: uncharacterized protein; PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters YP_004253593.1 COGs: COG2242 Precorrin-6B methylase 2; InterPro IPR000878: IPR012818: IPR014008; KEGG: bvu:BVU_3082 decarboxylating precorrin-6y C5,15-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Precorrin-6Y C(5,15)-methyltransferase (decarboxylating); SPTR: Decarboxylating precorrin-6y C5,15-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CbiT, precorrin-6Y methyltransferase-core; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit YP_004253594.1 COGs: COG4845 Chloramphenicol O-acetyltransferase; InterPro IPR001707; KEGG: bth:BT_3119 chloramphenicol acetyltransferase; PFAM: Chloramphenicol acetyltransferase; SPTR: uncharacterized protein; PFAM: Chloramphenicol acetyltransferase YP_004253595.1 COGs: COG1010 Precorrin-3B methylase; InterPro IPR000878: IPR003722: IPR006363; KEGG: pdi:BDI_1067 precorrin-3B C17-methyltransferase; PFAM: Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core; Tetrapyrrole methylase; PRIAM: Precorrin-3B C(17)-methyltransferase., Precorrin-8X methylmutase; SPTR: Precorrin-3B C17-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; PFAM: Precorrin-8X methylmutase; Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-3B C17-methyltransferase YP_004253596.1 COGs: COG4773 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; InterPro IPR012910: IPR000531; KEGG: pdi:BDI_1069 transport-related exported protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004253597.1 KEGG: pdi:BDI_1068 hypothetical protein; SPTR: Conserved hypothetical membrane protein YP_004253598.1 COGs: COG4822 Cobalamin biosynthesis protein CbiK Co2+ chelatase; InterPro IPR010388; KEGG: pdi:BDI_1070 anaerobic cobalt chelatase CbiK; PFAM: Anaerobic cobalt chelatase; PRIAM: Sirohydrochlorin cobaltochelatase; SPTR: Anaerobic cobalt chelatase CbiK; PFAM: Cobalt chelatase (CbiK) YP_004253599.1 SPTR: transcriptional regulator YP_004253600.1 COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356: IPR004546; KEGG: fjo:Fjoh_4393 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Type I restriction-modification system, M subunit; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM) YP_004253601.1 COGs: COG4804 conserved hypothetical protein; InterPro IPR009362; KEGG: hap:HAPS_1837 cytoplasmic protein; PFAM: Protein of unknown function DUF1016; SPTR: cytoplasmic protein; PFAM: Protein of unknown function (DUF1016) YP_004253602.1 InterPro IPR018873; KEGG: net:Neut_0148 hypothetical protein; PFAM: KilA-N, DNA-binding domain; SPTR: uncharacterized protein; PFAM: ORF6N domain YP_004253603.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bth:BT_0221 hypothetical protein; SPTR: ATPase YP_004253604.1 COGs: COG3275 regulator of cell autolysis; InterPro IPR010559; KEGG: bth:BT_0222 two-component system sensor; PFAM: Signal transduction histidine kinase, internal region; SPTR: two-component system sensor kinase; PFAM: Histidine kinase YP_004253605.1 COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789: IPR007492; KEGG: bth:BT_0223 two-component system response regulator; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_004253606.1 KEGG: lil:LA_1701 hypothetical protein; SPTR: uncharacterized protein YP_004253607.1 COGs: COG2865 transcriptional regulator protein; KEGG: fsu:Fisuc_2063 transcriptional regulator; SPTR: Helix-turn-helix DNA-binding domain protein YP_004253608.1 COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: bfs:BF2709 cobalamin biosynthesis-related protein; PFAM: CobN/magnesium chelatase; PRIAM: Cobaltochelatase; SPTR: uncharacterized protein; PFAM: CobN/Magnesium Chelatase YP_004253609.1 KEGG: coc:Coch_1799 hypothetical protein; SPTR: uncharacterized protein YP_004253610.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: cts:Ctha_1007 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004253611.1 COGs: COG4744 conserved hypothetical protein; InterPro IPR018676; KEGG: bfs:BF2712 hypothetical protein; PFAM: Protein of unknown function DUF2149; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2149) YP_004253612.1 COGs: COG0811 Biopolymer transport protein; KEGG: bvu:BVU_2196 integral membrane protein; SPTR: MotA/TolQ/ExbB proton channel family domain protein; PFAM: MotA/TolQ/ExbB proton channel family YP_004253613.1 KEGG: coc:Coch_1188 hypothetical protein; SPTR: uncharacterized protein YP_004253614.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910: IPR000531; KEGG: bvu:BVU_3110 iron transport-related exported protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004253615.1 COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883: IPR000421; KEGG: bfr:BF1734 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Coagulation factor 5/8 type, C-terminal; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase; PFAM: F5/8 type C domain; Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2 YP_004253616.1 COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883; KEGG: bfs:BF1813 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-N-acetylhexosaminidase; PFAM: Glycosyl hydrolase 20, catalytic domain; Glycosyl hydrolase 20, domain 2 YP_004253617.1 COGs: COG1797 Cobyrinic acid a c-diamide synthase; HAMAP: Cobyrinic acid a,c-diamide synthase CbiA; InterPro IPR011698: IPR004484; KEGG: pdi:BDI_0814 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; SPTR: Cobyrinic acid A,C-diamide synthase; TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase YP_004253618.1 COGs: COG1270 Cobalamin biosynthesis protein CobD/CbiB; HAMAP: Cobalamin biosynthesis protein cbiB; InterPro IPR004485; KEGG: cpi:Cpin_4469 cobalamin biosynthesis protein CobD; PFAM: Cobalamin (vitamin B12) biosynthesis CbiB; SPTR: Cobalamin biosynthesis protein CobD; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiB; PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD YP_004253619.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: cts:Ctha_1274 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II YP_004253620.1 COGs: COG1492 Cobyric acid synthase; HAMAP: Cobyric acid synthase CobQ; InterPro IPR011698: IPR004459; KEGG: pdi:BDI_1360 cobyric acid synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; SPTR: Cobyric acid synthase; TIGRFAM: Cobyric acid synthase CobQ; manually curated; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyric acid synthase CobQ YP_004253621.1 COGs: COG2096 conserved hypothetical protein; InterPro IPR002779: IPR017858; KEGG: pdi:BDI_1239 ATP:cob(I)alamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: uncharacterized protein; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase YP_004253622.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: bvu:BVU_1869 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SPTR: uncharacterized protein; PFAM: Phosphoglycerate mutase YP_004253623.1 InterPro IPR001959; KEGG: mba:Mbar_A3217 transposase; PFAM: Transposase, probable, IS891/IS1136/IS1341; SPTR: Transposase; PFAM: Helix-turn-helix domain; Probable transposase YP_004253624.1 InterPro IPR007711; KEGG: pru:PRU_0962 hypothetical protein; PFAM: Plasmid maintenance system killer; SPTR: uncharacterized protein; PFAM: Plasmid maintenance system killer protein YP_004253625.1 COGs: COG3093 Plasmid maintenance system antidote protein; InterPro IPR001387: IPR013430; KEGG: pru:PRU_1323 addiction module antidote protein, HigA family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix; TIGRFAM: addiction module antidote protein, HigA family YP_004253626.1 COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: bth:BT_4481 outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: uncharacterized protein; PFAM: OmpA family YP_004253627.1 KEGG: bth:BT_4480 hypothetical protein; SPTR: uncharacterized protein YP_004253628.1 KEGG: erg:ERGA_CDS_00790 lipoprotein releasing system transmembrane protein LolC; SPTR: Lipoprotein releasing system transmembrane protein lolC YP_004253629.1 KEGG: pmz:HMPREF0659_A5494 lipoprotein; SPTR: uncharacterized protein YP_004253630.1 KEGG: pmz:HMPREF0659_A5493 lipoprotein; SPTR: uncharacterized protein YP_004253631.1 InterPro IPR012944; KEGG: pmz:HMPREF0659_A5492 SusD family protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004253632.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: pmz:HMPREF0659_A5491 TonB-dependent receptor plug domain protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004253633.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bth:BT_3270 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004253634.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR013249: IPR014284: IPR014327; KEGG: bvu:BVU_2218 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004253635.1 COGs: COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; InterPro IPR003203; KEGG: pdi:BDI_3957 cobinamide kinase; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase; PRIAM: Adenosylcobinamide-phosphate guanylyltransferase; SPTR: Cobinamide kinase; PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase YP_004253636.1 COGs: COG2038 NaMN:DMB phosphoribosyltransferase; HAMAP: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic; InterPro IPR003200: IPR017846; KEGG: bfr:BF2486 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like, core; PRIAM: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; SPTR: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:Nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic; PFAM: Phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_004253637.1 COGs: COG0368 Cobalamin-5-phosphate synthase; HAMAP: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; InterPro IPR003805; KEGG: bfs:BF2520 cobalamin 5'-phosphate synthase; PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; SPTR: Cobalamin synthase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase YP_004253638.1 COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078: IPR017578; KEGG: pdi:BDI_3954 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SPTR: uncharacterized protein; TIGRFAM: Alpha-ribazole phosphatase, CobC; PFAM: Phosphoglycerate mutase; TIGRFAM: alpha-ribazole phosphatase YP_004253639.1 COGs: COG4823 Abortive infection bacteriophage resistance protein; InterPro IPR011664; KEGG: pmz:HMPREF0659_A7033 Abi-like protein; PFAM: Abortive infection bacteriophage resistance related; SPTR: Abi-like protein; PFAM: Abi-like protein YP_004253640.1 COGs: COG0716 Flavodoxins; InterPro IPR008254: IPR010086; KEGG: ana:alr2405 flavodoxin FldA; PFAM: Flavodoxin/nitric oxide synthase; SPTR: Flavodoxin; TIGRFAM: Flavodoxin, long chain; PFAM: Flavodoxin; TIGRFAM: flavodoxin, long chain YP_004253641.1 COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: glo:Glov_3671 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Magnesium chelatase; SPTR: Cobaltochelatase; PFAM: CobN/Magnesium Chelatase YP_004253642.1 COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910: IPR000531; KEGG: pgn:PGN_0683 TonB-linked receptor Tlr; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-linked receptor Tlr; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein YP_004253643.1 KEGG: dvl:Dvul_2561 hypothetical protein; SPTR: uncharacterized protein YP_004253644.1 COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR003781; KEGG: pru:PRU_0157 CoA-binding domain-containing protein; PFAM: CoA-binding; SPTR: CoA-binding domain protein; PFAM: CoA binding domain YP_004253645.1 COGs: COG0158 Fructose-1 6-bisphosphatase; HAMAP: Fructose-1,6-bisphosphatase; InterPro IPR000146; KEGG: vvy:VV0434 fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase; PRIAM: Fructose-bisphosphatase; SPTR: Fructose-1,6-bisphosphatase class 1; PFAM: Fructose-1-6-bisphosphatase YP_004253646.1 COGs: COG0527 Aspartokinase; InterPro IPR001048: IPR001341; KEGG: coc:Coch_0283 aspartate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Aspartate kinase; SPTR: Aspartokinase; TIGRFAM: Aspartate kinase domain; PFAM: Amino acid kinase; TIGRFAM: aspartate kinase YP_004253647.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2870 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; PFAM: Glycosyl transferase 2 YP_004253648.1 KEGG: cob:COB47_0343 hypothetical protein; SPTR: phosphatidylinositol-4-phosphate 5-kinase YP_004253649.1 COGs: COG0060 Isoleucyl-tRNA synthetase; HAMAP: Isoleucyl-tRNA synthetase; InterPro IPR002300: IPR013155: IPR002301; KEGG: pdi:BDI_0448 isoleucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: Isoleucine--tRNA ligase; SPTR: Isoleucine--tRNA ligase; TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase YP_004253650.1 KEGG: pdi:BDI_0449 DnaK suppressor protein, SPTR: uncharacterized protein; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: RNA polymerase-binding protein DksA YP_004253651.1 HAMAP: Peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: pdi:BDI_0450 signal peptidase; SPTR: Lipoprotein signal peptidase; PFAM: Signal peptidase (SPase) II YP_004253652.1 KEGG: xtr:100125793 FK506 binding protein 9, 63 kDa; SPTR: SubC YP_004253653.1 KEGG: pno:SNOG_10983 hypothetical protein; SPTR: uncharacterized protein YP_004253654.1 COGs: COG0550 Topoisomerase IA; InterProIPR006171: IPR013497: IPR005733: IPR006154: IPR 003601: IPR003602; KEGG: bvu:BVU_1335 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial YP_004253655.1 InterPro IPR000297; KEGG: pdi:BDI_0184 peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain YP_004253656.1 InterPro IPR012944; KEGG: bvu:BVU_1840 hypothetical protein; PFAM: RagB/SusD; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: SusD family YP_004253657.1 InterPro IPR012910: IPR000531; KEGG: bvu:BVU_1841 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug domain protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004253658.1 COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520: IPR006055; KEGG: pru:PRU_2813 exonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR: uncharacterized protein; PFAM: Exonuclease YP_004253659.1 COGs: COG3943 Virulence protein; InterPro IPR003812: IPR006440; KEGG: pmz:HMPREF0659_A5725 death-on-curing family protein; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; TIGRFAM: Death-on-curing protein; PFAM: Fic/DOC family; TIGRFAM: death-on-curing family protein YP_004253660.1 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: bvu:BVU_0528 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: uncharacterized protein; PFAM: Glycosyl transferase 2 YP_004253661.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cts:Ctha_1320 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1 YP_004253662.1 COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR001732: IPR014026: IPR014027: IPR017476; KEGG: bvu:BVU_1534 UDP-ManNAc dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: uncharacterized protein; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004253663.1 COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: bfr:BF3656 UDP-GlcNAc 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_004253664.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: apr:Apre_1267 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1 YP_004253665.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: btk:BT9727_5106 beta-1,3-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Beta-1,3-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase 2 YP_004253666.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: bth:BT_2866 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: uncharacterized protein; PFAM: Glycosyl transferases group 1 YP_004253667.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bss:BSUW23_16845 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: uncharacterized protein; PFAM: Glycosyl transferase 2 YP_004253668.1 InterPro IPR018580; KEGG: gfo:GFO_1791 hypothetical protein; PFAM: Protein of unknown function, membrane YfhO; SPTR: uncharacterized protein; PFAM: Bacterial membrane protein YfhO YP_004253669.1 InterPro IPR002797; KEGG: fjo:Fjoh_0345 hypothetical protein; PFAM: Polysaccharide biosynthesis protein; SPTR: uncharacterized protein YP_004253670.1 KEGG: bvu:BVU_0248 hypothetical protein; SPTR: uncharacterized protein YP_004253671.1 KEGG: bth:BT_2081 hypothetical protein; SPTR: lipoprotein YP_004253672.1 COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: pdi:BDI_3191 collagenase precursor; PFAM: Peptidase U32; SPTR: Collagenase; PFAM: Peptidase U32 YP_004253673.1 COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461: IPR004770; KEGG: zpr:ZPR_2853 Na+/H+ antiporter; PFAM: Na+/H+ antiporter NhaC-like; SPTR: Na+/H+ antiporter; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter family; TIGRFAM: Na+/H+ antiporter NhaC YP_004253674.1 COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: phe:Phep_0214 penicillinase repressor; PFAM: Penicillinase repressor; SPTR: antibiotic resistance-related regulatory protein; PFAM: Penicillinase repressor YP_004253675.1 COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR008756: IPR006260; KEGG: bfs:BF3767 hypothetical protein; PFAM: TonB, C-terminal; Peptidase M56, BlaR1; SPTR: Outer membrane transport energization protein TonB TC 2.C.1.1.1); TIGRFAM: TonB, C-terminal; PFAM: BlaR1 peptidase M56; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004253676.1 COGs: COG0233 Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; InterPro IPR002661: IPR015998; KEGG: coc:Coch_1898 ribosome recycling factor; PFAM: Ribosome recycling factor; SPTR: Ribosome-recycling factor; TIGRFAM: Ribosome recycling factor; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor YP_004253677.1 COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro IPR003329: IPR004528; KEGG: pmz:HMPREF0659_A6731 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_004253678.1 COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: coc:Coch_1402 protein of unknown function DUF583; PFAM: Protein of unknown function DUF583; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF583 YP_004253679.1 COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: rbi:RB2501_06580 hypothetical protein; PFAM: Protein of unknown function DUF583; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF583 YP_004253680.1 COGs: COG0332 3-oxoacyl-ACP; HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR013751: IPR013747: IPR004655; KEGG: pdi:BDI_2436 3-oxoacyl-ACP synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-ACP synthase 3; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-ACP synthase III YP_004253681.1 COGs: COG0333 Ribosomal protein L32; HAMAP: Ribosomal protein L32p; InterPro IPR002677; KEGG: pgn:PGN_0188 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32 YP_004253682.1 InterPro IPR003772; KEGG: pdi:BDI_2437 hypothetical protein; PFAM: Protein of unknown function DUF177; SPTR: uncharacterized protein; manually curated; PFAM: Uncharacterized ACR, COG1399 YP_004253683.1 COGs: COG1162 GTPase; HAMAP: ribosome biogenesis GTPase RsgA; InterPro IPR004881; KEGG: bfs:BF0618 ribosome-associated GTPase; PFAM: GTPase EngC; SPTR: uncharacterized protein; TIGRFAM: GTPase EngC; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A YP_004253684.1 COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: Nucleoside-triphosphatase; InterPro IPR002637: IPR020922; KEGG: pmz:HMPREF0659_A5030 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1-like protein; PRIAM: Nucleoside-triphosphatase; SPTR: Nucleoside-triphosphatase; TIGRFAM: Ham1-like protein; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family YP_004253685.1 COGs: COG1381 Recombinational DNA repair protein (RecF pathway); InterPro IPR003717; KEGG: pmz:HMPREF0659_A5202 DNA repair protein RecO; PFAM: Recombination protein O, RecO; SPTR: DNA repair protein recO; TIGRFAM: Recombination protein O, RecO; PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO YP_004253686.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: bth:BT_0295 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004253687.1 KEGG: bth:BT_0296 xanthan lyase XalB precursor; SPTR: Xanthan lyase XalB YP_004253688.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bth:BT_0297 outer membrane lipoprotein SilC precursor; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004253689.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bth:BT_0298 cation efflux system protein (outer membrane protein); SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit YP_004253690.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: bth:BT_0299 AcrB/AcrD/AcrF family cation efflux protein; PFAM: Acriflavin resistance protein; SPTR: uncharacterized protein; PFAM: AcrB/AcrD/AcrF family YP_004253691.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036: IPR003439: IPR003593; KEGG: bth:BT_0300 AcrB/AcrD/AcrF family cation efflux protein; PFAM: Acriflavin resistance protein; ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Cation efflux system (AcrB/AcrD/AcrF family); PFAM: ABC transporter; AcrB/AcrD/AcrF family YP_004253692.1 KEGG: bth:BT_0302 hypothetical protein; SPTR: uncharacterized protein YP_004253693.1 KEGG: tbi:Tbis_1891 extracellular solute-binding protein family 1 YP_004253694.1 KEGG: cch:Cag_0614 parallel beta-helix repeat-containing protein; SPTR: Parallel beta-helix repeat YP_004253695.1 COGs: COG0358 DNA primase; InterProIPR002694: IPR013264: IPR006171: IPR006295: IPR 006154; KEGG: pdi:BDI_1848 DNA primase; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; SPTR: uncharacterized protein; TIGRFAM: DNA primase, DnaG; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core YP_004253696.1 InterPro IPR001647; KEGG: fjo:Fjoh_1265 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: HTH-type transcriptional regulator YhgD; manually curated; PFAM: Bacterial regulatory proteins, tetR family YP_004253697.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: zpr:ZPR_4557 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane protein; PFAM: Outer membrane efflux protein YP_004253698.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: pdi:BDI_0337 membrane fusion protein transporter; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004253699.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: bfs:BF3962 transmembrane Acr-type transport protein; PFAM: Acriflavin resistance protein; SPTR: Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_004253700.1 KEGG: pgn:PGN_1429 hypothetical protein; SPTR: uncharacterized protein YP_004253701.1 COGs: COG1284 conserved hypothetical protein; InterPro IPR003740: IPR019264; KEGG: aoe:Clos_2268 hypothetical protein; PFAM: Protein of unknown function DUF2179; Protein of unknown function DUF161; SPTR: uncharacterized protein; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179) YP_004253703.1 COGs: COG0602 Organic radical activating protein; InterPro IPR012837: IPR007197; KEGG: pdi:BDI_3406 hypothetical protein; PFAM: Radical SAM; SPTR: Anaerobic ribonucleoside-triphosphate reductase-activating protein; TIGRFAM: Ribonucleoside-triphosphate reductase activating, anaerobic; PFAM: Radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein YP_004253704.1 COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR012833: IPR005144; KEGG: pdi:BDI_3407 anaerobic ribonucleoside triphosphate reductase; PFAM: ATP-cone; PRIAM: Ribonucleoside-triphosphate reductase; SPTR: Anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; PFAM: ATP cone domain; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase YP_004253705.1 InterPro IPR010181; KEGG: bth:BT_0631 hypothetical protein; PFAM: CGCAxxGCC motif; SPTR: uncharacterized protein; TIGRFAM: CGCAxxGCC motif; PFAM: redox-active protein (C_GCAxxG_C_C); TIGRFAM: C_GCAxxG_C_C family probable redox protein YP_004253706.1 KEGG: bfs:BF2756 lipoprotein; SPTR: lipoprotein; PFAM: Protein of unknown function (DUF2874) YP_004253707.1 InterPro IPR001440: IPR019734; KEGG: pdi:BDI_2681 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004253708.1 COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR002524; KEGG: bfs:BF2703 metal transport-related membrane protein; PFAM: Cation efflux protein; SPTR: metal transport-related membrane protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_004253709.1 COGs: COG3610 conserved hypothetical protein; KEGG: amu:Amuc_1963 hypothetical protein; SPTR: uncharacterized protein YP_004253710.1 COGs: COG2966 conserved hypothetical protein; InterPro IPR010619; KEGG: bfs:BF2716 hypothetical protein; PFAM: Protein of unknown function DUF1212; SPTR: integral membrane protein; PFAM: Protein of unknown function (DUF1212) YP_004253711.1 InterPro IPR002591; KEGG: phe:Phep_1357 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase YP_004253713.1 COGs: COG1636 conserved hypothetical protein; InterPro IPR003828; KEGG: bvu:BVU_2425 hypothetical protein; PFAM: Protein of unknown function DUF208; SPTR: uncharacterized protein; PFAM: Uncharacterized BCR, COG1636 YP_004253714.1 KEGG: mma:MM_3273 hypothetical protein; SPTR: Predicted protein YP_004253715.1 COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; InterPro IPR005248: IPR004821: IPR004820; KEGG: fba:FIC_02247 nicotinate-nucleotide adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain YP_004253716.1 COGs: COG0481 Membrane GTPase LepA; HAMAP: GTP-binding protein LepA; InterProIPR006297: IPR005225: IPR000795: IPR004161: IPR 000640: IPR013842; KEGG: bth:BT_0632 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein lepA; TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain YP_004253717.1 COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR005229: IPR013527: IPR013551; KEGG: fbc:FB2170_04945 hypothetical protein; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: conserved hypothetical protein TIGR00255 YP_004253718.1 KEGG: cpb:Cphamn1_1973 S23 ribosomal protein; SPTR: S23 ribosomal protein; PFAM: S23 ribosomal protein YP_004253719.1 COGs: COG0194 Guanylate kinase; HAMAP: Guanylate kinase, sub-group; InterPro IPR017665: IPR008144: IPR008145; KEGG: bvu:BVU_1644 guanylate kinase; PFAM: Guanylate kinase; PRIAM: Guanylate kinase; SMART: Guanylate kinase/L-type calcium channel; SPTR: uncharacterized protein; TIGRFAM: Guanylate kinase, sub-group; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase YP_004253720.1 COGs: COG1359 conserved hypothetical protein; InterPro IPR007138; KEGG: swd:Swoo_2453 antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: Antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase YP_004253721.1 COGs: COG2071 glutamine amidotransferase; InterPro IPR011697; KEGG: cdf:CD1188 glutamine amidotransferase; PFAM: Peptidase C26; SPTR: Glutamine amidotransferase class-I domain protein; PFAM: Peptidase C26 YP_004253722.1 COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: pdi:BDI_1384 transport protein; PFAM: Major facilitator superfamily MFS-1; SPTR: transport protein; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_004253723.1 COGs: COG3040 Bacterial lipocalin; InterPro IPR013208; KEGG: bth:BT_4493 sugar nucleotide epimerase; PFAM: Lipocalin-like; SPTR: uncharacterized protein; PFAM: Lipocalin-like domain YP_004253724.1 KEGG: bfr:BF1783 hypothetical protein; SPTR: uncharacterized protein; PFAM: OmpA family YP_004253725.1 KEGG: bth:BT_1451 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3575) YP_004253726.1 COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; HAMAP: 5-methylthioadenosine/S-adenosylhomocysteine deaminase; InterPro IPR006680; KEGG: sul:SYO3AOP1_0026 amidohydrolase; PFAM: Amidohydrolase 1; PRIAM: S-adenosylhomocysteine deaminase; SPTR: Amidohydrolase; PFAM: Amidohydrolase YP_004253727.1 KEGG: bth:BT_1328 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3078); Protein of unknown function, DUF481 YP_004253728.1 COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase; InterPro IPR005925: IPR006035; KEGG: gfo:GFO_3624 agmatinase; PFAM: Ureohydrolase; PRIAM: Agmatinase; SPTR: Agmatinase, ; TIGRFAM: agmatinase; PFAM: Arginase; TIGRFAM: agmatinase YP_004253729.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: pdi:BDI_0957 hypothetical protein; PFAM: Peptidase S54, rhomboid; SPTR: uncharacterized protein; PFAM: Rhomboid family YP_004253730.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR014327: IPR007627: IPR013249; KEGG: bvu:BVU_1982 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004253731.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: cpi:Cpin_2882 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein YP_004253732.1 InterPro IPR012910: IPR000531; KEGG: bth:BT_3279 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: SusC homolog; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_004253733.1 InterPro IPR012944; KEGG: bth:BT_3280 hypothetical protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; PFAM: SusD family YP_004253734.1 KEGG: bth:BT_3281 hypothetical protein; SPTR: uncharacterized protein YP_004253735.1 InterPro IPR011871; KEGG: cpb:Cphamn1_1563 major paralogous domain; SPTR: Major paralogous domain; PFAM: Fibrobacter succinogenes major domain (Fib_succ_major); TIGRFAM: Fibrobacter succinogenes major paralogous domain YP_004253736.1 InterPro IPR013766; KEGG: rbi:RB2501_14609 lipoprotein/thioderoxin; PFAM: Thioredoxin domain; SPTR: uncharacterized protein; PFAM: Redoxin YP_004253737.1 InterPro IPR000866; KEGG: cpi:Cpin_2877 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: Redoxin YP_004253738.1 KEGG: sen:SACE_1377 hypothetical protein; SPTR: uncharacterized protein YP_004253739.1 KEGG: pvx:PVX_002505 hypothetical protein; SPTR: uncharacterized protein YP_004253740.1 KEGG: cpy:Cphy_1558 DegV family protein; SPTR: uncharacterized protein YP_004253741.1 InterPro IPR013766; KEGG: bth:BT_3069 disulphide-isomerase; PFAM: Thioredoxin domain; SPTR: uncharacterized protein; PFAM: Thioredoxin YP_004253742.1 KEGG: spu:577531 hypothetical LOC577531 YP_004253743.1 COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: fjo:Fjoh_4918 hexapaptide repeat-containing transferase; PRIAM: Maltose O-acetyltransferase; SPTR: Transferase hexapeptide repeat containing protein; PFAM: Maltose acetyltransferase; Bacterial transferase hexapeptide (three repeats) YP_004253744.1 COGs: COG1166 Arginine decarboxylase (spermidine biosynthesis); HAMAP: Biosynthetic arginine decarboxylase; InterPro IPR002985: IPR000183; KEGG: bvu:BVU_1337 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: Arginine decarboxylase; SPTR: Arginine decarboxylase; TIGRFAM: Arginine decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: arginine decarboxylase, biosynthetic YP_004253745.1 KEGG: bvu:BVU_1221 hypothetical protein; SPTR: uncharacterized protein YP_004253746.1 InterPro IPR005490; KEGG: bfs:BF0441 hypothetical protein; PFAM: YkuD domain; SPTR: Conserved hypothetical exported protein; PFAM: L,D-transpeptidase catalytic domain YP_004253747.1 KEGG: cch:Cag_0376 hypothetical protein; SPTR: uncharacterized protein YP_004253748.1 KEGG: cch:Cag_0377 hypothetical protein; SPTR: uncharacterized protein YP_004253749.1 KEGG: pfh:PFHG_04353 conserved hypothetical protein; SPTR: uncharacterized protein YP_004253750.1 KEGG: smb:smi_1368 hypothetical protein; SPTR: uncharacterized protein YP_004253751.1 KEGG: ttm:Tthe_0272 transcriptional regulator, XRE family; SPTR: prophage Lsa1 DNA-binding protein, XRE family YP_004253752.1 KEGG: sfu:Sfum_2499 phage integrase; SPTR: uncharacterized protein YP_004253753.1 InterPro IPR000792; KEGG: dap:Dacet_1161 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; PFAM: Bacterial regulatory proteins, luxR family YP_004253754.1 KEGG: tad:TRIADDRAFT_55416 hypothetical protein YP_004253755.1 KEGG: afw:Anae109_2307 esterase; SPTR: esterase YP_004253756.1 KEGG: bvu:BVU_2847 hypothetical protein; SPTR: uncharacterized protein YP_004253757.1 COGs: COG0338 Site-specific DNA methylase; InterPro IPR012326: IPR012327; KEGG: pdi:BDI_0862 methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: Methyltransferase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam) YP_004253758.1 SPTR: Frigida-like YP_004253759.1 KEGG: bfs:BF2323 hypothetical protein; SPTR: uncharacterized protein YP_004253760.1 KEGG: lbf:LBF_2347 adenylate cyclase-like protein; SPTR: Xre family toxin-antitoxin system, antitoxin component YP_004253761.1 COGs: COG0358 DNA primase; InterProIPR006295: IPR002694: IPR013264: IPR006171: IPR 006154; KEGG: pru:PRU_1995 DNA primase; SPTR: DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core YP_004253762.1 KEGG: bfu:BC1G_01786 hypothetical protein; SPTR: uncharacterized protein YP_004253763.1 KEGG: dha:DEHA2D02508g DEHA2D02508p; SPTR: DEHA2D02508p YP_004253764.1 COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907; KEGG: pru:PRU_0953 Clp protease; PFAM: Peptidase S14, ClpP; SPTR: uncharacterized protein; PFAM: Clp protease YP_004253765.1 KEGG: bfr:BF2334 hypothetical protein; SPTR: uncharacterized protein YP_004253766.1 KEGG: bfs:BF2317 hypothetical protein; SPTR: uncharacterized protein YP_004253767.1 KEGG: dwi:Dwil_GK25779 GK25779 gene product from transcript GK25779-RA; SPTR: uncharacterized protein YP_004253768.1 KEGG: bfs:BF2314 hypothetical protein; SPTR: uncharacterized protein YP_004253769.1 KEGG: ech:ECH_0836 hypothetical protein; SPTR: uncharacterized protein YP_004253770.1 KEGG: zpr:ZPR_1529 CRISPR-associated helicase Cas3; SPTR: CRISPR-associated helicase Cas3 YP_004253771.1 KEGG: sid:M164_2237 protein of unknown function DUF224 cysteine-rich region domain protein YP_004253772.1 KEGG: dvi:Dvir_GJ16996 GJ16996 gene product from transcript GJ16996-RA; SPTR: uncharacterized protein YP_004253773.1 KEGG: pru:PRU_0944 hypothetical protein; SPTR: uncharacterized protein YP_004253774.1 KEGG: iho:Igni_0112 hypothetical protein YP_004253775.1 KEGG: bfs:BF2302 hypothetical protein; SPTR: uncharacterized protein YP_004253776.1 KEGG: tca:663720 similar to endoplasmic reticulum to nucleus signalling 1 isoform 1; SPTR: uncharacterized protein YP_004253777.1 KEGG: bvi:Bcep1808_6224 hypothetical protein; SPTR: uncharacterized protein YP_004253778.1 KEGG: bfs:BF2306 hypothetical protein; SPTR: uncharacterized protein YP_004253779.1 KEGG: mac:MA1645 sensory transduction histidine kinase; SPTR: uncharacterized protein YP_004253780.1 KEGG: sna:Snas_0802 GtrA family protein; SPTR: GtrA family protein YP_004253781.1 InterPro IPR002502: IPR006619; KEGG: hch:HCH_02886 negative regulator of beta-lactamase expression; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; Peptidoglycan recognition protein, metazoa/bacteria; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004253782.1 KEGG: pmx:PERMA_0884 diaminopimelate decarboxylase; SPTR: Diaminopimelate decarboxylase YP_004253783.1 KEGG: ptm:GSPATT00002204001 hypothetical protein; SPTR: uncharacterized protein YP_004253784.1 KEGG: dmo:Dmoj_GI11122 GI11122 gene product from transcript GI11122-RA; SPTR: uncharacterized protein YP_004253785.1 KEGG: ddi:DDB_G0280811 hypothetical protein; SPTR: UPF0746 protein DDB_G0280811 YP_004253786.1 KEGG: bfs:BF2317 hypothetical protein; SPTR: uncharacterized protein YP_004253787.1 KEGG: ddi:DDB_G0280329 DHHC-type zinc finger-containing protein; SPTR: ZDHHC-type palmitoyltransferase 8 YP_004253788.1 KEGG: bfs:BF2295 hypothetical protein; SPTR: uncharacterized protein YP_004253789.1 KEGG: tva:TVAG_076530 surface antigen BspA-like; SPTR: uncharacterized protein YP_004253792.1 InterPro IPR010090; KEGG: bfs:BF2294 hypothetical protein; PFAM: Phage tail tape measure protein TP901, core region; SPTR: uncharacterized protein; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage-related minor tail protein; TIGRFAM: phage tail tape measure protein, TP901 family, core region YP_004253793.1 InterPro IPR002104; KEGG: sli:Slin_0672 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase YP_004253794.1 COGs: COG0858 Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; InterPro IPR000238; KEGG: bth:BT_2839 ribosome-binding factor A; PFAM: Ribosome-binding factor A; SPTR: uncharacterized protein; TIGRFAM: Ribosome-binding factor A; PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A YP_004253795.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: pdi:BDI_3305 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004253796.1 COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: pdi:BDI_1751 cyclophilin-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Cyclophilin-type peptidyl-prolyl cis-trans isomerase; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_004253797.1 KEGG: cpi:Cpin_0437 hypothetical protein; SPTR: uncharacterized protein; PFAM: VanZ like family YP_004253798.1 COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; InterPro IPR004529: IPR004188: IPR002319; KEGG: pdi:BDI_0836 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: Phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit YP_004253799.1 COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: pdi:BDI_0107 flagellar motor protein MotB; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Flagellar motor protein MotB; PFAM: OmpA family YP_004253800.1 InterPro IPR010846; KEGG: dfe:Dfer_2759 protein of unknown function DUF1460; PFAM: Protein of unknown function DUF1460; SPTR: Hypothetical cytosolic protein; PFAM: Protein of unknown function (DUF1460) YP_004253801.1 InterPro IPR014094; KEGG: chu:CHU_2333 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Uncharacterised conserved lipoprotein, UCP02722; TIGRFAM: uncharacterized proteobacterial lipoprotein YP_004253802.1 COGs: COG3014 conserved hypothetical protein; KEGG: aas:Aasi_1905 hypothetical protein; SPTR: uncharacterized protein YP_004253803.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: pmz:HMPREF0659_A6004 peptidase dimerization domain protein; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Beta-Ala-His dipeptidase; SPTR: uncharacterized protein; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain YP_004253804.1 COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR005946: IPR000836; KEGG: bvu:BVU_3551 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase YP_004253805.1 COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: bth:BT_0159 hypothetical protein; PFAM: Protein of unknown function DUF125, transmembrane; SPTR: uncharacterized protein; PFAM: VIT family YP_004253806.1 COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: sli:Slin_1598 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Sodium/iodide co-transporter; PFAM: Sodium:solute symporter family YP_004253807.1 KEGG: bfr:BF4064 hypothetical protein; SPTR: uncharacterized protein YP_004253808.1 COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR002302: IPR015413: IPR002300: IPR013155; KEGG: bvu:BVU_1149 leucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; SPTR: Leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; tRNA synthetases class I (M); TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family YP_004253809.1 COGs: COG2832 conserved hypothetical protein; InterPro IPR007401; KEGG: dhd:Dhaf_2936 protein of unknown function DUF454; PFAM: Protein of unknown function DUF454; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF454) YP_004253810.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269; KEGG: bth:BT_3326 dihydrouridine synthase; PFAM: tRNA-dihydrouridine synthase; SPTR: nifR3 family TIM-barrel enzyme with dihydrouridine synthase domain; PFAM: Dihydrouridine synthase (Dus) YP_004253811.1 KEGG: pfh:PFHG_00697 hypothetical protein YP_004253812.1 COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: ppr:PBPRA0481 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Hypothetical transcriptional regulator, MarR family protein; PFAM: MarR family YP_004253813.1 COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; InterPro IPR003462; KEGG: sus:Acid_5671 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin; PRIAM: Ornithine cyclodeaminase; SPTR: Ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin family YP_004253814.1 InterPro IPR012910; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: Secretin and TonB N terminus short domain./TonB-dependent Receptor Plug Domain; PFAM: TonB-dependent Receptor Plug Domain YP_004253815.1 InterPro IPR012944; KEGG: cpi:Cpin_1098 hypothetical protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004253816.1 KEGG: gfo:GFO_2920 secreted protein; SPTR: uncharacterized protein YP_004253817.1 KEGG: bth:BT_3274 hypothetical protein; SPTR: uncharacterized protein YP_004253818.1 KEGG: bca:BCE_1275 wall-associated protein, SPTR: Wall-associated protein, ; TIGRFAM: YD repeat (two copies) YP_004253819.1 KEGG: mdo:100025710 similar to Notch4; SPTR: Notch gene homolog 4 (Drosophila); PFAM: Calcium-binding EGF domain YP_004253820.1 KEGG: bth:BT_0664 hypothetical protein; SPTR: uncharacterized protein YP_004253821.1 COGs: COG1225 Peroxiredoxin; InterPro IPR013740; KEGG: bfs:BF1378 hypothetical protein; PFAM: Redoxin; SPTR: uncharacterized protein pdiA; PFAM: Redoxin YP_004253822.1 COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR001604: IPR020821; KEGG: cts:Ctha_1807 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A; SPTR: DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease YP_004253823.1 COGs: COG0793 Periplasmic protease; InterPro IPR004447: IPR001478: IPR005151; KEGG: pdi:BDI_0205 carboxy-terminal processing protease precursor; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: uncharacterized protein; TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004253824.1 COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: bvu:BVU_1939 isoprenoid biosynthesis related protein; PFAM: Polyprenyl synthetase; PRIAM: Geranyltranstransferase; SPTR: uncharacterized protein; PFAM: Polyprenyl synthetase YP_004253825.1 COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase; InterPro IPR001670; KEGG: bfs:BF2670 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: Alcohol dehydrogenase (NADP(+)); SPTR: uncharacterized protein; PFAM: Iron-containing alcohol dehydrogenase YP_004253826.1 KEGG: bth:BT_4494 hypothetical protein; SPTR: uncharacterized protein YP_004253827.1 COGs: COG1490 D-Tyr-tRNAtyr deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; InterPro IPR003732; KEGG: bth:BT_3265 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004253828.1 InterPro IPR004518; KEGG: bvu:BVU_1210 hypothetical protein; PFAM: NTP pyrophosphohydrolase MazG, catalytic core; SPTR: uncharacterized protein; PFAM: MazG nucleotide pyrophosphohydrolase domain YP_004253829.1 COGs: COG1033 exporter of the RND superfamily protein; KEGG: coc:Coch_1805 patched family protein; SPTR: integral membrane protein; PFAM: MMPL family YP_004253830.1 COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR011343: IPR002915; KEGG: bfs:BF0108 deoxyribose-phosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: uncharacterized protein; TIGRFAM: Deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase YP_004253831.1 COGs: COG2315 conserved hypothetical protein; KEGG: cpi:Cpin_1946 protein of unknown function DUF419; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF419) YP_004253832.1 COGs: COG0249 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 1; InterProIPR005748: IPR007695: IPR007860: IPR007696: IPR 007861: IPR000432; KEGG: pdi:BDI_2998 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; SPTR: DNA mismatch repair protein mutS; TIGRFAM: DNA mismatch repair protein MutS, type 1; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS YP_004253833.1 COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: fjo:Fjoh_2011 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family YP_004253834.1 InterPro IPR013766; KEGG: bth:BT_3069 disulphide-isomerase; PFAM: Thioredoxin domain; SPTR: uncharacterized protein; PFAM: Thioredoxin YP_004253835.1 InterPro IPR013766; KEGG: fba:FIC_01900 disulphide-isomerase; PFAM: Thioredoxin domain; SPTR: uncharacterized protein; PFAM: Thioredoxin YP_004253836.1 KEGG: amu:Amuc_0576 peptidase M16 domain protein; SPTR: Peptidase M16 domain protein YP_004253837.1 KEGG: bth:BT_3069 disulphide-isomerase; SPTR: disulphide-isomerase YP_004253838.1 KEGG: cpi:Cpin_3050 hypothetical protein; SPTR: lipoprotein YP_004253839.1 InterPro IPR012944; KEGG: bth:BT_3280 hypothetical protein; PFAM: RagB/SusD; SPTR: lipoprotein; PFAM: SusD family YP_004253840.1 InterPro IPR012910: IPR000531; KEGG: bth:BT_3279 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: SusC homolog; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004253841.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2219 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004253842.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: bvu:BVU_1982 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004253843.1 COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: bth:BT_3802 peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_004253844.1 InterPro IPR007730; KEGG: pgn:PGN_1129 hypothetical protein; PFAM: Sporulation related domain; SPTR: uncharacterized protein; PFAM: Sporulation related domain YP_004253845.1 KEGG: pdi:BDI_3170 hypothetical protein; SPTR: uncharacterized protein YP_004253846.1 COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394: IPR007046: IPR007634; KEGG: pdi:BDI_3169 RNA polymerase sigma-54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor YP_004253847.1 COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; HAMAP: Asparaginyl-tRNA synthetase; InterPro IPR004522: IPR004365: IPR004364; KEGG: sli:Slin_2442 asparaginyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: Asparaginyl-tRNA synthetase; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase YP_004253848.1 COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR004559: IPR007197: IPR010723: IPR006638; KEGG: bth:BT_2168 coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase YP_004253849.1 KEGG: pdi:BDI_2339 hypothetical protein; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain YP_004253850.1 KEGG: swd:Swoo_1651 polysaccharide export protein; SPTR: uncharacterized protein YP_004253851.1 COGs: COG0102 Ribosomal protein L13; InterPro IPR005823: IPR005822; KEGG: coc:Coch_0721 ribosomal protein L13; PFAM: Ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type YP_004253852.1 COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: pdi:BDI_3488 30S ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: 30S ribosomal protein S9; PFAM: Ribosomal protein S9/S16 YP_004253853.1 COGs: COG0052 Ribosomal protein S2; InterPro IPR005706: IPR001865; KEGG: bfs:BF3785 30S ribosomal protein S2; PFAM: Ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type YP_004253854.1 COGs: COG0264 Translation elongation factor Ts; HAMAP: Translation elongation factor EFTs/EF1B; InterPro IPR001816: IPR000449: IPR014039; KEGG: pgn:PGN_1587 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; SPTR: Elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts YP_004253855.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: bfs:BF3260 hypothetical protein; PFAM: Glycosyl transferase, family 39; SPTR: membrane protein YP_004253856.1 COGs: COG3952 membrane protein; InterPro IPR011499; KEGG: bfs:BF3261 transport-related, membrane protein; PFAM: Lipid A biosynthesis, N-terminal; SPTR: lipid-A-disaccharide synthase; PFAM: Lipid A Biosynthesis N-terminal domain YP_004253857.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bfs:BF3262 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Dolichol-phosphate mannosyltransferase; PFAM: Glycosyl transferase 2 YP_004253858.1 COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: bvu:BVU_1075 phosphoglycerol transferase-like alkaline phosphatase superfamily protein; PFAM: Sulfatase; SPTR: uncharacterized protein; PFAM: Sulfatase YP_004253859.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: gyc:GYMC61_3180 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: uncharacterized protein; PFAM: Glycosyl transferase 2 YP_004253860.1 COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: bvu:BVU_1078 dolichyl-phosphate-mannose-protein mannosyltransferase; PFAM: Glycosyl transferase, family 39; SPTR: uncharacterized protein YP_004253862.1 COGs: COG0528 Uridylate kinase; InterPro IPR015963: IPR001048; KEGG: pmz:HMPREF0659_A5437 UMP kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: UMP kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Amino acid kinase; TIGRFAM: uridylate kinase YP_004253863.1 COGs: COG1154 Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; InterPro IPR005477: IPR005475: IPR005476; KEGG: phe:Phep_3860 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: Deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase YP_004253864.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR001808; KEGG: cpi:Cpin_0678 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_004253865.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: pdi:BDI_2026 aspartate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aspartate aminotransferase; PFAM: Aminotransferase class I and II YP_004253866.1 InterPro IPR002123; KEGG: bvu:BVU_0548 hypothetical protein; PFAM: Phospholipid/glycerol acyltransferase; SPTR: uncharacterized protein; PFAM: Acyltransferase YP_004253867.1 KEGG: pno:SNOG_12600 hypothetical protein; SPTR: uncharacterized protein YP_004253868.1 KEGG: ere:EUBREC_2028 alkyl hydroperoxide reductase; SPTR: Peroxiredoxin YP_004253869.1 COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004527: IPR020058; KEGG: bvu:BVU_1475 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: Glutamate--tRNA ligase; SPTR: uncharacterized protein; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_004253870.1 COGs: COG3296 conserved hypothetical protein; KEGG: sde:Sde_0007 hypothetical protein; SPTR: Conserved hypothetical membrane protein YP_004253871.1 KEGG: phe:Phep_2791 hypothetical protein; SPTR: uncharacterized protein YP_004253872.1 COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR004652: IPR001269; KEGG: bvu:BVU_1085 dehydrogenase; PFAM: tRNA-dihydrouridine synthase; SPTR: uncharacterized protein; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family YP_004253873.1 KEGG: bpi:BPLAN_057 peptidase; SPTR: Probable peptidase YP_004253874.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: cpi:Cpin_0909 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004253875.1 KEGG: cpi:Cpin_0910 hypothetical protein; SPTR: uncharacterized protein YP_004253876.1 KEGG: pdi:BDI_1925 hypothetical protein; SPTR: uncharacterized protein YP_004253877.1 COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218: IPR020822; KEGG: bvu:BVU_2061 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: Chorismate mutase, type II; DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: uncharacterized protein; PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_004253878.1 COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: phe:Phep_3793 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; PRIAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase YP_004253879.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: pdi:BDI_1378 aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: LL-diaminopimelate aminotransferase; SPTR: Succinyldiaminopimelate transaminase; PFAM: Aminotransferase class I and II YP_004253880.1 COGs: COG0077 Prephenate dehydratase; InterPro IPR001086; KEGG: coc:Coch_1056 prephenate dehydratase; PFAM: Prephenate dehydratase; PRIAM: Prephenate dehydratase; SPTR: uncharacterized protein; PFAM: Prephenate dehydratase YP_004253881.1 COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR018320: IPR020046: IPR020047: IPR002562: IPR 001098: IPR002421: IPR008918; KEGG: pdi:BDI_2972 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase 1; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase A; TIGRFAM: DNA polymerase I YP_004253882.1 InterPro IPR019861; KEGG: dfe:Dfer_3688 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific membrane protein YP_004253883.1 KEGG: cpi:Cpin_0487 hypothetical protein; SPTR: uncharacterized protein YP_004253884.1 COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: pdi:BDI_3054 uroporphyrinogen-III synthase; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Possible uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen-III synthase HemD YP_004253885.1 HAMAP: Ribonuclease P; InterPro IPR000100; KEGG: sli:Slin_3922 hypothetical protein; PFAM: Ribonuclease P; SPTR: Ribonuclease P protein component; TIGRFAM: Ribonuclease P; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial YP_004253886.1 COGs: COG0759 conserved hypothetical protein; HAMAP: Protein of unknown function DUF37; InterPro IPR002696; KEGG: bfs:BF0077 hypothetical protein; PFAM: Protein of unknown function DUF37; SPTR: UPF0161 protein HMPREF0101_02077; TIGRFAM: Protein of unknown function DUF37; manually curated; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD YP_004253887.1 COGs: COG0793 Periplasmic protease; InterPro IPR004447: IPR001478: IPR005151; KEGG: chu:CHU_0098 C-terminal processing peptidase-3; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A; TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc) YP_004253888.1 COGs: COG0322 Nuclease subunit of the excinuclease complex; HAMAP: Excinuclease ABC, C subunit; InterPro IPR004791: IPR000305: IPR001162; KEGG: gfo:GFO_3173 excinuclease ABC subunit C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: UvrABC system protein C; TIGRFAM: Excinuclease ABC, C subunit; PFAM: UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit YP_004253889.1 COGs: COG1001 Adenine deaminase; HAMAP: Adenine deaminase; InterPro IPR006679: IPR006680; KEGG: wch:wcw_0517 adenine deaminase; PFAM: Amidohydrolase 1; PRIAM: Adenine deaminase; SPTR: Adenine deaminase; TIGRFAM: Adenine deaminase; PFAM: Amidohydrolase; TIGRFAM: adenine deaminase YP_004253890.1 COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; HAMAP: Glucose-inhibited division protein A; InterPro IPR004416: IPR002218; KEGG: pdi:BDI_2965 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A YP_004253891.1 COGs: COG0319 metal-dependent hydrolase; HAMAP: Uncharacterised protein family UPF0054; InterPro IPR002036; KEGG: bvu:BVU_1217 hypothetical protein; PFAM: Uncharacterised protein family UPF0054; SPTR: metalloprotease HMPREF0156_01375; TIGRFAM: Uncharacterised protein family UPF0054; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family YP_004253892.1 InterPro IPR003594; KEGG: chu:CHU_3500 anti-sigma regulatory factor; PFAM: ATPase-like, ATP-binding domain; SPTR: Anti-sigma regulatory factor; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004253893.1 KEGG: sli:Slin_5518 chromosome segregation ATPase-like protein; SPTR: Chromosome segregation ATPase-like protein YP_004253894.1 COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: gfo:GFO_3257 M23 family peptidase; PFAM: Peptidase M23; SPTR: peptidase; PFAM: Peptidase M23 YP_004253895.1 KEGG: phe:Phep_3839 hypothetical protein; SPTR: uncharacterized protein YP_004253896.1 InterPro IPR001440: IPR019734; KEGG: pdi:BDI_3175 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: uncharacterized protein YP_004253897.1 COGs: COG0756 dUTPase; HAMAP: Deoxyuridine 5'-triphosphate nucleotidohydrolase; InterPro IPR008181: IPR008180; KEGG: pgn:PGN_0997 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: DeoxyUTP pyrophosphatase domain; PRIAM: dUTP diphosphatase; SPTR: Deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) YP_004253898.1 COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR004821: IPR004820; KEGG: dfe:Dfer_4553 RfaE bifunctional protein; PFAM: Cytidylyltransferase; SPTR: RfaE bifunctional protein, domain II; TIGRFAM: Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain YP_004253899.1 COGs: COG0853 Aspartate 1-decarboxylase; HAMAP: Aspartate decarboxylase; InterPro IPR003190; KEGG: cpi:Cpin_3688 aspartate alpha-decarboxylase; PFAM: Aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: Aspartate decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase YP_004253900.1 COGs: COG0414 Panthothenate synthetase; HAMAP: Pantoate-beta-alanine ligase; InterPro IPR003721; KEGG: pdi:BDI_0213 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: Pantoate-beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase YP_004253901.1 COGs: COG1438 Arginine repressor; HAMAP: Arginine repressor; InterPro IPR020899; KEGG: ssm:Spirs_3243 arginine repressor, ArgR; PFAM: Arginine repressor, C-terminal; SPTR: Arginine repressor; PFAM: Arginine repressor, C-terminal domain; Arginine repressor, DNA binding domain; TIGRFAM: arginine repressor YP_004253902.1 COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR006274: IPR002474: IPR000991; KEGG: pgn:PGN_1444 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: Carbamoyl-phosphate synthase, small subunit; TIGRFAM: Carbamoyl phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit YP_004253903.1 COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR006275: IPR005481: IPR005479: IPR005480: IPR 011607; KEGG: bth:BT_0557 carbamyl phosphate synthetase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like; PRIAM: Carbamoyl-phosphate synthase (ammonia); SPTR: Carbamyl phosphate synthetase; TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit YP_004253904.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR014284: IPR014327: IPR007627: IPR013249: IPR 000792; KEGG: zpr:ZPR_0255 ECF-type RNA polymerase sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004253905.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2219 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004253906.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: bth:BT_3279 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: SusC homolog; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004253907.1 InterPro IPR012944; KEGG: bth:BT_3280 hypothetical protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; PFAM: SusD family YP_004253908.1 KEGG: bth:BT_3281 hypothetical protein; SPTR: uncharacterized protein YP_004253909.1 InterPro IPR011871; KEGG: cpb:Cphamn1_1563 major paralogous domain; SPTR: Major paralogous domain; PFAM: Fibrobacter succinogenes major domain (Fib_succ_major); TIGRFAM: Fibrobacter succinogenes major paralogous domain YP_004253910.1 InterPro IPR013766; KEGG: bth:BT_3069 disulphide-isomerase; PFAM: Thioredoxin domain; SPTR: disulphide-isomerase; PFAM: Thioredoxin; Protein of unknown function, DUF255 YP_004253912.1 COGs: COG4637 ATPase; KEGG: gvi:glr1927 hypothetical protein; SPTR: SMC domain protein YP_004253913.1 KEGG: ajs:Ajs_4079 hypothetical protein; SPTR: uncharacterized protein YP_004253914.1 COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264: IPR001460; KEGG: pdi:BDI_1818 glycosyltransferase 51, bifunctional family GT51 beta-glycosyltransferase/PBP transpeptidase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: uncharacterized protein; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase YP_004253915.1 COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504: IPR003593; KEGG: bfs:BF0555 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA YP_004253916.1 KEGG: tva:TVAG_154640 surface antigen BspA-like; SPTR: uncharacterized protein YP_004253917.1 KEGG: bth:BT_2319 hypothetical protein; SPTR: uncharacterized protein; PFAM: OmpA family YP_004253918.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: bfs:BF2779 multiple promoter invertase; PFAM: Resolvase, N-terminal; SPTR: uncharacterized protein; PFAM: Resolvase, N terminal domain YP_004253919.1 COGs: COG0217 conserved hypothetical protein; HAMAP: Protein of unknown function DUF28; InterPro IPR002876; KEGG: pdi:BDI_1233 hypothetical protein; PFAM: Protein of unknown function DUF28; SPTR: UPF0082 protein HMPREF0104_02951; TIGRFAM: Protein of unknown function DUF28; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family YP_004253920.1 KEGG: pna:Pnap_3264 hypothetical protein; SPTR: uncharacterized protein YP_004253921.1 COGs: COG1609 Transcriptional regulators; InterPro IPR001761: IPR000843; KEGG: pdi:BDI_1557 transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family YP_004253922.1 KEGG: cat:CA2559_05100 alpha-amylase; SPTR: Alpha-amylase YP_004253923.1 COGs: COG3634 Alkyl hydroperoxide reductase large subunit; InterPro IPR012081: IPR013027; KEGG: pdi:BDI_3397 alkyl hydroperoxide reductase subunit F; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: NADH dehydrogenase; SPTR: Alkyl hydroperoxide reductase subunit F; TIGRFAM: Alkyl hydroperoxide reductase, subunit F; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: alkyl hydroperoxide reductase, F subunit YP_004253924.1 COGs: COG0450 Peroxiredoxin; InterPro IPR017559: IPR000866: IPR019479; KEGG: pdi:BDI_3396 alkyl hydroperoxide reductase subunit C; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; PRIAM: Peroxiredoxin; SPTR: Peroxiredoxin; TIGRFAM: Peroxiredoxin; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; TIGRFAM: peroxiredoxin YP_004253925.1 COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: pdi:BDI_3192 thioesterase; PFAM: Thioesterase superfamily; SPTR: thioesterase; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family YP_004253926.1 COGs: COG2768 Uncharacterized Fe-S center protein; KEGG: pdi:BDI_2121 uncharacterized Fe-S center protein, ferredoxin; SPTR: Uncharacterized Fe-S center protein, ferredoxin; PFAM: Domain of unknown function (DUF362) YP_004253927.1 COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: pdi:BDI_0314 hypothetical protein; PFAM: Oxidoreductase, N-terminal; PRIAM: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; SPTR: uncharacterized protein; PFAM: Oxidoreductase, NAD-binding Rossmann fold YP_004253928.1 COGs: COG0708 Exonuclease III; InterPro IPR000097: IPR004808: IPR005135; KEGG: pdi:BDI_1111 exodeoxyribonuclease; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: Exodeoxyribonuclease III; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; manually curated; PFAM: Endonuclease/Exonuclease/phosphatase; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth) YP_004253929.1 COGs: COG1362 Aspartyl aminopeptidase; InterPro IPR001948; KEGG: cpr:CPR_0577 aminopeptidase 2; PFAM: Peptidase M18, aminopeptidase I; PRIAM: Aspartyl aminopeptidase; SPTR: M18 family aminopeptidase; PFAM: Aminopeptidase I zinc metalloprotease (M18) YP_004253930.1 COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: coc:Coch_0327 ferritin Dps family protein; PFAM: Ferritin/Dps protein; SPTR: DNA-binding DPS protein; PFAM: Ferritin-like domain YP_004253931.1 InterPro IPR000620; KEGG: pdi:BDI_0262 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; PFAM: EamA-like transporter family YP_004253932.1 KEGG: bfr:BF3033 hypothetical protein; SPTR: uncharacterized protein YP_004253933.1 InterPro IPR000601; KEGG: bfr:BF3032 cell surface protein; PFAM: PKD; SMART: PKD; SPTR: uncharacterized protein; PFAM: PKD domain YP_004253934.1 KEGG: bfr:BF3031 cell wall biogenesis protein; SPTR: Predicted protein YP_004253935.1 KEGG: bfr:BF3030 surface layer protein; SPTR: uncharacterized protein; PFAM: Glutamine cyclotransferase YP_004253936.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: bfr:BF3029 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004253937.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: bth:BT_1952 Fe3+ ABC transporter, periplasmic iron-binding protein; PFAM: Periplasmic binding protein; SPTR: Fe3+ ABC transporter; PFAM: Periplasmic binding protein YP_004253938.1 InterPro IPR000200; KEGG: bth:BT_2451 pyrogenic exotoxin B; PFAM: Peptidase C10, streptopain; SPTR: uncharacterized protein; PFAM: Peptidase C10 family YP_004253939.1 KEGG: cts:Ctha_1015 hypothetical protein; SPTR: uncharacterized protein YP_004253940.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: bth:BT_1951 Fe3+ ABC transporter, permease; PFAM: Bacterial transport system permease; SPTR: Fe3+ ABC transporter; PFAM: FecCD transport family YP_004253941.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439: IPR003593; KEGG: bfr:BF3026 iron(III) ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Achromobactin transport ATP-binding protein CbrD; PFAM: ABC transporter YP_004253942.1 InterPro IPR019271; KEGG: bfr:BF3025 hypothetical protein; PFAM: Protein of unknown function DUF2284, metal-binding; SPTR: uncharacterized protein; PFAM: Predicted metal-binding protein (DUF2284) YP_004253943.1 COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: pdi:BDI_2718 Na+/H+-dicarboxylate symporter; PFAM: Sodium:dicarboxylate symporter; SPTR: uncharacterized protein; PFAM: Sodium:dicarboxylate symporter family YP_004253944.1 KEGG: lci:LCK_01602 elongation factor G; SPTR: Elongation factor G YP_004253945.1 InterPro IPR001647; KEGG: zpr:ZPR_2519 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family YP_004253946.1 InterPro IPR001647; KEGG: zpr:ZPR_2519 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family YP_004253947.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bth:BT_3905 alkaline protease AprF; PFAM: Outer membrane efflux protein; SPTR: alkaline protease aprF; PFAM: Outer membrane efflux protein YP_004253948.1 COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: bth:BT_3904 hypothetical protein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; PFAM: HlyD family secretion protein YP_004253949.1 InterPro IPR013525; KEGG: bfs:BF3761 transport-related membrane protein; PFAM: ABC-2 type transporter; SPTR: uncharacterized protein; PFAM: ABC-2 type transporter YP_004253950.1 InterPro IPR013525; KEGG: bth:BT_3902 hypothetical protein; PFAM: ABC-2 type transporter; SPTR: ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter YP_004253951.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bfs:BF3193 lipoprotein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004253952.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: bth:BT_2118 AcrB/AcrD/AcrF family transporter; PFAM: Acriflavin resistance protein; SPTR: Transporter, AcrB/D/F family; PFAM: AcrB/AcrD/AcrF family YP_004253953.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bvu:BVU_4126 outer membrane protein; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004253954.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: dat:HRM2_p00370 multiple promoter invertase; PFAM: Resolvase, N-terminal; SPTR: Resolvase, N-terminal domain; PFAM: Resolvase, N terminal domain YP_004253955.1 COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: bfs:BF3193 lipoprotein; PFAM: Secretion protein HlyD; SPTR: uncharacterized protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_004253956.1 COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: bth:BT_2118 AcrB/AcrD/AcrF family transporter; PFAM: Acriflavin resistance protein; SPTR: Transporter, AcrB/D/F family; PFAM: AcrB/AcrD/AcrF family YP_004253957.1 COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bvu:BVU_4126 outer membrane protein; PFAM: Outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein YP_004253958.1 KEGG: bvu:BVU_3205 hypothetical protein; SPTR: uncharacterized protein YP_004253959.1 KEGG: cpv:cgd5_400 protein with 4 PHD domains plus a SET domain and associated cysteine cluster at the C-terminus; SPTR: Protein with 4 PHD domains plus a SET domain and associated cysteine cluster at the C-terminus YP_004253960.1 COGs: COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system; InterPro IPR011659: IPR005151; KEGG: bvu:BVU_1154 exported protease; PFAM: Peptidase S41; WD40-like Beta Propeller; SMART: Peptidase S41; SPTR: uncharacterized protein; PFAM: Dipeptidyl peptidase IV (DPP IV) N-terminal region; WD40-like Beta Propeller Repeat; Peptidase S41 YP_004253961.1 KEGG: fba:FIC_01258 hypothetical protein; SPTR: uncharacterized protein YP_004253962.1 KEGG: gfo:GFO_1858 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2807) YP_004253963.1 COGs: COG0174 Glutamine synthetase; InterPro IPR008146; KEGG: bfs:BF2343 glutamine synthetase I; PFAM: Glutamine synthetase, catalytic domain; SPTR: glutamine synthetase I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain YP_004253964.1 InterPro IPR000182; KEGG: rbi:RB2501_08710 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: uncharacterized protein; PFAM: Acetyltransferase (GNAT) family YP_004253965.1 COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518; KEGG: aps:CFPG_348 argininosuccinate synthase; PFAM: Argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase YP_004253966.1 COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; InterPro IPR000706: IPR000534: IPR012280; KEGG: chu:CHU_3081 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation domain; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form YP_004253967.1 COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: pdi:BDI_0067 acetylornithine aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Acetylornithine aminotransferase; PFAM: Aminotransferase class-III YP_004253968.1 COGs: COG0548 Acetylglutamate kinase; InterPro IPR004662: IPR001048; KEGG: bfs:BF0197 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: Acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase; PFAM: Amino acid kinase; TIGRFAM: acetylglutamate kinase YP_004253969.1 COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR011650; KEGG: bfr:BF0372 acetylornithine deacetylase; PFAM: Peptidase M20; Peptidase M20, dimerisation; SPTR: Acetylornithine deacetylase; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain YP_004253970.1 COGs: COG0165 Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; InterPro IPR009049: IPR000362; KEGG: bfs:BF0457 argininosuccinate lyase; PFAM: Fumarate lyase; PRIAM: Argininosuccinate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: Argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase YP_004253971.1 KEGG: zpr:ZPR_4460 secreted protein; SPTR: Secreted protein; PFAM: Protein of unknown function (DUF2874) YP_004253972.1 COGs: COG4452 Inner membrane protein involved in colicin E2 resistance; InterPro IPR010364; KEGG: bth:BT_1254 hypothetical protein; PFAM: Uncharacterised protein family, inner membrane CreD; SPTR: Inner membrane protein CreD; PFAM: Inner membrane protein CreD YP_004253973.1 KEGG: bth:BT_1253 hypothetical protein; SPTR: uncharacterized protein YP_004253974.1 KEGG: gfo:GFO_2556 hypothetical protein; SPTR: uncharacterized protein YP_004253975.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR002078: IPR002197: IPR003593; KEGG: pdi:BDI_0639 RteB, two-component system response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: RteB, two-component system response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004253976.1 COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterProIPR006104: IPR006102: IPR006103: IPR004199: IPR 000421; KEGG: bfs:BF3205 exported beta-galactosidase; PFAM: Glycoside hydrolase 2, TIM barrel; Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase, family 42, domain 5; Coagulation factor 5/8 type, C-terminal; SMART: Coagulation factor 5/8 type, C-terminal; SPTR: exported beta-galactosidase; PFAM: F5/8 type C domain; domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Beta galactosidase small chain YP_004253977.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594: IPR001789; KEGG: pdi:BDI_0637 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_004253978.1 InterPro IPR003400; KEGG: zpr:ZPR_4542 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR YP_004253979.1 InterPro IPR003400; KEGG: bfs:BF3528 hypothetical protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: uncharacterized protein; PFAM: Biopolymer transport protein ExbD/TolR YP_004253980.1 KEGG: bfs:BF3529 hypothetical protein; SPTR: uncharacterized protein YP_004253981.1 COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: zpr:ZPR_4545 ExbB-like MotA/TolQ/ExbB family biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel family protein; PFAM: MotA/TolQ/ExbB proton channel family YP_004253982.1 COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR006033: IPR006034; KEGG: bth:BT_0526 L-asparaginase I; PFAM: Asparaginase/glutaminase; PRIAM: 1-alkyl-2-acetylglycerophosphocholine esterase; SPTR: uncharacterized protein; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I YP_004253983.1 COGs: COG0084 Mg-dependent DNase; InterPro IPR015991: IPR001130; KEGG: fba:FIC_00739 deoxyribonuclease YcfH; PFAM: Deoxyribonuclease, TatD-related; SPTR: TatD related DNase; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_004253984.1 COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097: IPR006096; KEGG: ssm:Spirs_3994 glutamate dehydrogenase (NADP(+)); PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; PRIAM: Glutamate dehydrogenase (NADP(+)); SPTR: NAD-specific glutamate dehydrogenase (NAD-GDH) (NADH-dependent glutamate dehydrogenase); PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_004253985.1 COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: chu:CHU_1444 DNA processing protein; PFAM: DNA recombination-mediator protein A; SPTR: SMF family DNA processing protein; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA YP_004253986.1 COGs: COG0337 3-dehydroquinate synthetase; HAMAP: 3-dehydroquinate synthase AroB, subgroup; InterPro IPR016037: IPR002658; KEGG: pdi:BDI_2542 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase YP_004253987.1 COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; InterPro IPR006264: IPR001986; KEGG: pdi:BDI_3146 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase YP_004253988.1 COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: bvu:BVU_1881 cytosine/adenosine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: cytosine/adenosine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_004253989.1 COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: bth:BT_1672 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_004253990.1 COGs: COG3616 amino acid aldolase or racemase; InterPro IPR001608; KEGG: tet:TTHERM_00688570 Alanine racemase, N-terminal domain containing protein; PFAM: Alanine racemase, N-terminal; SPTR: uncharacterized protein; PFAM: Alanine racemase, N-terminal domain YP_004253991.1 COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: pdi:BDI_0581 hypothetical protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding domain protein; PFAM: Cyclic nucleotide-binding domain YP_004253992.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764: IPR002772; KEGG: pdi:BDI_2428 beta-glucosidase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal; PRIAM: Beta-glucosidase; SPTR: Glycoside hydrolase, family 3; PFAM: Glycosyl hydrolase 3 C terminal domain; Glycosyl hydrolase 3 N terminal domain YP_004253993.1 COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: bld:BLi00380 hypothetical protein; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: transcriptional regulator; PFAM: MarR family YP_004253994.1 COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148: IPR006037; KEGG: pdi:BDI_0779 K+ uptake system protein; PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: K+ uptake transporter, KtrA subunit; PFAM: TrkA-N domain YP_004253995.1 COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: pdi:BDI_0780 K+ uptake protein; PFAM: Cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: uncharacterized protein; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family YP_004253996.1 COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: bfs:BF1147 hypothetical protein; PFAM: Protein of unknown function DUF486; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF486 YP_004253997.1 KEGG: bth:BT_4052 ABC transporter ATP-binding protein; SPTR: ABC transporter ATP-binding protein YP_004253998.1 InterPro IPR012657; KEGG: ant:Arnit_1086 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02436; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436 YP_004253999.1 KEGG: bth:BT_4052 ABC transporter ATP-binding protein; SPTR: uncharacterized protein YP_004254000.1 COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR004605: IPR008824: IPR003959: IPR008823: IPR 003593; KEGG: bfs:BF0128 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit YP_004254001.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594; KEGG: bth:BT_2166 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004254002.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: pru:PRU_0615 DNA-binding repsonse regulator RprY; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: DNA-binding response regulator RprY; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004254003.1 COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR004785: IPR003500; KEGG: bfr:BF1651 ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; PRIAM: Ribose-5-phosphate isomerase; SPTR: Ribose 5-phosphate isomerase B; TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family YP_004254004.1 KEGG: aas:Aasi_1610 hypothetical protein; SPTR: uncharacterized protein YP_004254005.1 InterPro IPR013740; KEGG: bvu:BVU_1977 thiol-disulfide oxidoreductase; PFAM: Redoxin; SPTR: thiol-disulfide oxidoreductase; PFAM: Redoxin YP_004254006.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: fjo:Fjoh_1516 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: GldA; PFAM: ABC transporter; TIGRFAM: gliding motility-associated ABC transporter ATP-binding subunit GldA YP_004254007.1 COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); HAMAP: DNA mismatch repair protein, MutL; InterProIPR014763: IPR020667: IPR003594: IPR013507: IPR 014790; KEGG: bvu:BVU_0422 DNA mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein, N-terminal; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL YP_004254008.1 KEGG: pdi:BDI_2388 hypothetical protein; SPTR: uncharacterized protein YP_004254009.1 InterPro IPR005242; KEGG: bfr:BF3411 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein YP_004254010.1 KEGG: ppr:PBPRA0358 transposase; SPTR: Transposase YP_004254011.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: pdi:BDI_3604 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein; PFAM: Rhomboid family YP_004254012.1 COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: dfe:Dfer_3810 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein; PFAM: Rhomboid family YP_004254013.1 COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: pdi:BDI_1878 hypothetical protein; PFAM: PSP1, C-terminal; SPTR: uncharacterized protein; PFAM: PSP1 C-terminal conserved region YP_004254014.1 COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: bvu:BVU_1829 DNA polymerase III, delta subunit; SPTR: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta' subunit YP_004254015.1 COGs: COG0173 Aspartyl-tRNA synthetase; InterPro IPR004524: IPR004365: IPR004364: IPR004115; KEGG: pgn:PGN_0266 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; PRIAM: Aspartate--tRNA ligase; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type YP_004254016.1 InterPro IPR003825; KEGG: gfo:GFO_3421 colicin V production protein; PFAM: Colicin V production protein; SPTR: Colicin V production protein; PFAM: Colicin V production protein YP_004254017.1 COGs: COG0162 Tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; InterPro IPR002307: IPR002305; KEGG: bfs:BF0079 tyrosyl-tRNA synthetase 1; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tyrosine--tRNA ligase; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase YP_004254018.1 InterPro IPR006260; KEGG: bvu:BVU_1938 outer membrane protein TonB; PFAM: TonB, C-terminal; SPTR: Outer membrane protein TonB; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004254019.1 COGs: COG2262 GTPase; InterPro IPR016496: IPR005225: IPR002917; KEGG: pdi:BDI_3288 GTP-binding protein HflX; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein HflX; TIGRFAM: GTP-binding protein, HflX; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain YP_004254020.1 InterPro IPR006260; KEGG: bvu:BVU_1938 outer membrane protein TonB; PFAM: TonB, C-terminal; SPTR: Outer membrane protein TonB; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004254021.1 COGs: COG2091 Phosphopantetheinyl transferase; InterPro IPR004568: IPR008278; KEGG: bld:BLi00407 hypothetical protein; PFAM: 4'-phosphopantetheinyl transferase; SPTR: Biosurfactant protein; TIGRFAM: Phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain YP_004254022.1 COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR005986: IPR000534: IPR012280; KEGG: bth:BT_3636 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase, gamma-proteobacterial; aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) YP_004254023.1 COGs: COG2194 membrane-associated metal-dependent hydrolase; InterPro IPR000917; KEGG: bfs:BF3209 sulfatase; PFAM: Sulfatase; SPTR: uncharacterized protein; PFAM: Sulfatase; Domain of unknown function (DUF1705) YP_004254024.1 KEGG: bth:BT_1814 hypothetical protein; SPTR: Bacterial surface antigen YP_004254025.1 InterPro IPR006513; KEGG: sun:SUN_1710 transcriptional regulator; PFAM: Conserved hypothetical protein, YtfJ; SPTR: uncharacterized protein; PFAM: Bacterial protein of unknown function (YtfJ_HI0045) YP_004254026.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: zpr:ZPR_1753 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; manually curated; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254027.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_2250 FecR protein; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004254029.1 InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_2191 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004254030.1 InterPro IPR012944; KEGG: cpi:Cpin_3748 hypothetical protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004254031.1 KEGG: cpi:Cpin_3747 hypothetical protein; SPTR: uncharacterized protein YP_004254032.1 KEGG: cpi:Cpin_3746 hypothetical protein; SPTR: uncharacterized protein YP_004254033.1 InterPro IPR003961; KEGG: pdi:BDI_1040 hypothetical protein; PFAM: Fibronectin, type III; SPTR: uncharacterized protein YP_004254034.1 COGs: COG1217 membrane GTPase involved in stress response; InterProIPR005225: IPR006298: IPR000795: IPR004161: IPR 000640; KEGG: pdi:BDI_2769 GTP-binding protein TypA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: uncharacterized protein; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain YP_004254035.1 COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771: IPR011289; KEGG: aps:CFPG_178 fructose-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: uncharacterized protein; TIGRFAM: Fructose-1,6-bisphosphate aldolase, class II; Ketose-bisphosphate aldolase, class-II; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist YP_004254037.1 KEGG: bfs:BF0053 hypothetical protein; SPTR: uncharacterized protein YP_004254038.1 KEGG: bth:BT_3777 hypothetical protein; SPTR: uncharacterized protein YP_004254039.1 KEGG: bth:BT_3778 hypothetical protein; SPTR: uncharacterized protein YP_004254040.1 KEGG: pas:Pars_0852 hypothetical protein; SPTR: tetratricopeptide repeat-containing domain protein YP_004254041.1 KEGG: spu:576570 similar to Hu/elav; SPTR: Hemin-binding periplasmic protein HmuT YP_004254042.1 KEGG: cat:CA2559_05470 hypothetical protein; SPTR: Hemin-binding periplasmic protein HmuT YP_004254043.1 KEGG: pan:PODANSg7701 hypothetical protein; SPTR: uncharacterized protein YP_004254044.1 KEGG: pdi:BDI_3446 hypothetical protein; SPTR: uncharacterized protein YP_004254045.1 KEGG: bth:BT_0662 hypothetical protein; SPTR: O-antigen polymerase YP_004254046.1 COGs: COG0692 Uracil DNA glycosylase; HAMAP: Uracil-DNA glycosylase; InterPro IPR002043: IPR005122; KEGG: bfs:BF3608 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like; SPTR: Uracil-DNA glycosylase; TIGRFAM: Uracil-DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase YP_004254047.1 COGs: COG3823 Glutamine cyclotransferase; InterPro IPR007788; KEGG: zpr:ZPR_1225 glutamine cyclotransferase; PFAM: Glutamine cyclotransferase; SPTR: Glutamine cyclotransferase; PFAM: Glutamine cyclotransferase YP_004254048.1 COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR002308: IPR015803: IPR015273; KEGG: bfs:BF0161 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR; PRIAM: Cysteine--tRNA ligase; SPTR: uncharacterized protein; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase YP_004254049.1 KEGG: zpr:ZPR_3173 KWG Leptospira; SPTR: uncharacterized protein YP_004254050.1 KEGG: tml:GSTUM_00005291001 hypothetical protein YP_004254051.1 COGs: COG1171 Threonine dehydratase; InterPro IPR011820: IPR001926: IPR001721; KEGG: smh:DMIN_02560 L-threonine ammonia-lyase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal; SPTR: Threonine dehydratase; TIGRFAM: Threonine dehydratase; PFAM: C-terminal regulatory domain of Threonine dehydratase; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine ammonia-lyase, biosynthetic, long form; threonine dehydratase YP_004254052.1 COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; InterPro IPR004429: IPR001804; KEGG: aps:CFPG_565 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase YP_004254053.1 COGs: COG0066 3-isopropylmalate dehydratase small subunit; HAMAP: 3-isopropylmalate dehydratase, small subunit; InterPro IPR004431: IPR000573; KEGG: cpi:Cpin_1984 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; SPTR: 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit YP_004254054.1 COGs: COG0065 3-isopropylmalate dehydratase large subunit; HAMAP: 3-isopropylmalate dehydratase, large subunit region; InterPro IPR004430: IPR001030; KEGG: pdi:BDI_2063 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; SPTR: 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; PFAM: Aconitase (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit YP_004254055.1 COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR005671: IPR000891: IPR013709; KEGG: bvu:BVU_2004 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; PRIAM: 2-isopropylmalate synthase; SPTR: uncharacterized protein; TIGRFAM: Bacterial 2-isopropylmalate synthase; PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; TIGRFAM: 2-isopropylmalate synthase, bacterial type YP_004254056.1 COGs: COG0059 Ketol-acid reductoisomerase; InterPro IPR013023: IPR013116: IPR000506; KEGG: cpi:Cpin_1923 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; PRIAM: Ketol-acid reductoisomerase; SPTR: Ketol-acid reductoisomerase; TIGRFAM: Acetohydroxy acid isomeroreductase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase YP_004254057.1 COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR004789: IPR002912: IPR019455; KEGG: fps:FP0447 acetolactate synthase small subunit; PFAM: Amino acid-binding ACT; Acetolactate synthase, small subunit, C-terminal; SPTR: Acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Small subunit of acetolactate synthase; ACT domain; TIGRFAM: acetolactate synthase, small subunit YP_004254058.1 COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012846: IPR012001: IPR012000: IPR011766; KEGG: zpr:ZPR_2802 acetolactate synthase large subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: Acetolactate synthase; SPTR: Acetolactate synthase; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type YP_004254059.1 COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; HAMAP: Dihydroxy-acid dehydratase; InterPro IPR004404: IPR000581; KEGG: pdi:BDI_2073 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; PFAM: Dehydratase; TIGRFAM: dihydroxy-acid dehydratase YP_004254060.1 KEGG: oaa:100077200 similar to osteotesticular protein tyrosine phosphatase YP_004254061.1 COGs: COG2949 Uncharacterized membrane protein; InterPro IPR003848; KEGG: bfs:BF2643 transport-related membrane protein; PFAM: Protein of unknown function DUF218; SPTR: transport-related membrane protein; PFAM: DUF218 domain YP_004254062.1 COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: pdi:BDI_0615 long-chain-fatty-acid-CoA ligase, PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: Long-chain fatty-acid-CoA ligase; PFAM: AMP-binding enzyme YP_004254063.1 COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; InterPro IPR004588; KEGG: pdi:BDI_3173 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_004254064.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: pdi:BDI_1177 Na+-driven multidrug efflux pump; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: uncharacterized protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004254065.1 KEGG: pdi:BDI_1616 hypothetical protein; SPTR: uncharacterized protein YP_004254066.1 KEGG: pdi:BDI_3422 hypothetical protein; SPTR: uncharacterized protein YP_004254067.1 KEGG: bfr:BF0046 hypothetical protein; SPTR: uncharacterized protein YP_004254068.1 KEGG: bfs:BF0405 hypothetical protein; SPTR: uncharacterized protein YP_004254069.1 KEGG: vcj:VCD_003503 toxin co-regulated pilus biosynthesis protein I chemoreceptor negative regulator of TcpA; SPTR: uncharacterized protein YP_004254070.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: fjo:Fjoh_4520 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Two component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004254071.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: pdi:BDI_2821 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004254072.1 KEGG: bth:BT_1328 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3078); Protein of unknown function, DUF481 YP_004254073.1 InterPro IPR007341; KEGG: pdi:BDI_0929 hypothetical protein; PFAM: Transglycosylase-associated protein; SPTR: uncharacterized protein; PFAM: Transglycosylase associated protein YP_004254074.1 KEGG: bfs:BF3046 hypothetical protein; SPTR: uncharacterized protein YP_004254075.1 COGs: COG0822 NifU homolog involved in Fe-S cluster formation; KEGG: bfs:BF3045 hypothetical protein; SPTR: uncharacterized protein YP_004254076.1 InterPro IPR007138; KEGG: bfs:BF2126 flavoredoxin; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: uncharacterized protein; PFAM: Antibiotic biosynthesis monooxygenase YP_004254077.1 COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; InterPro IPR003779; KEGG: bfr:BF1907 hypothetical protein; PFAM: Carboxymuconolactone decarboxylase; SPTR: uncharacterized protein; PFAM: Cupin domain; Carboxymuconolactone decarboxylase YP_004254078.1 KEGG: bfr:BF1906 flavodoxin; SPTR: Flavodoxin; PFAM: Flavodoxin-like fold YP_004254080.1 KEGG: brm:Bmur_0192 TPR repeat-containing protein; SPTR: TPR repeat-containing protein YP_004254081.1 InterPro IPR001611; KEGG: vvi:100268107 hypothetical protein LOC100268107; SPTR: Predicted protein; PFAM: Protein of unknown function (DUF1812) YP_004254082.1 KEGG: svo:SVI_2772 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1812) YP_004254083.1 KEGG: edi:EDI_118730 hypothetical protein; SPTR: uncharacterized protein YP_004254085.1 KEGG: aci:ACIAD3308 lipase chaperone; SPTR: Predicted protein YP_004254086.1 InterPro IPR011637; KEGG: bvu:BVU_1970 hypothetical protein; PFAM: DoxX; SPTR: uncharacterized protein; PFAM: DoxX YP_004254087.1 KEGG: tgr:Tgr7_1988 transcriptional regulator, XRE family; SPTR: Transcriptional regulator, XRE family YP_004254088.1 KEGG: rcu:RCOM_0920160 Salt-tolerance protein, SPTR: uncharacterized protein YP_004254089.1 COGs: COG0527 Aspartokinase; KEGG: bth:BT_2403 bifunctional aspartokinase I/homeserine dehydrogenase I; SPTR: Homoserine dehydrogenase; PFAM: Amino acid kinase YP_004254090.1 InterPro IPR004360; KEGG: pdi:BDI_3588 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004254091.1 COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: pdi:BDI_3587 metal dependent hydrolase; SPTR: Metal dependent hydrolase YP_004254092.1 COGs: COG1125 ABC-type proline/glycine betaine transport systems ATPase components; InterPro IPR003439: IPR003593; KEGG: cbt:CLH_1344 glycine betaine/carnitine/choline transport ATP-binding protein opuCA; PFAM: ABC transporter-like; PRIAM: Polyamine-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; PFAM: ABC transporter YP_004254093.1 KEGG: gfo:GFO_2551 hypothetical protein; SPTR: uncharacterized protein YP_004254094.1 KEGG: ele:Elen_1603 hypothetical protein; SPTR: uncharacterized protein YP_004254096.1 COGs: COG1539 Dihydroneopterin aldolase; InterPro IPR006157: IPR006156; KEGG: pdi:BDI_0005 dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; SPTR: uncharacterized protein; TIGRFAM: Dihydroneopterin aldolase subgroup; Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain YP_004254097.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; manually curated; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254098.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_2250 FecR protein; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004254099.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: Outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004254100.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: lipoprotein; PFAM: SusD family YP_004254101.1 KEGG: cpi:Cpin_3290 hypothetical protein; SPTR: uncharacterized protein YP_004254102.1 KEGG: cpi:Cpin_1100 hypothetical protein; SPTR: uncharacterized protein YP_004254103.1 KEGG: cpi:Cpin_4495 hypothetical protein; SPTR: lipoprotein YP_004254104.1 KEGG: cpi:Cpin_5115 hypothetical protein; SPTR: uncharacterized protein YP_004254105.1 KEGG: bth:BT_0664 hypothetical protein; SPTR: uncharacterized protein YP_004254106.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004254107.1 KEGG: cpi:Cpin_3289 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004254108.1 InterPro IPR012910; KEGG: cpi:Cpin_3288 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004254109.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004254110.1 KEGG: bfr:BF0901 hypothetical protein; SPTR: uncharacterized protein YP_004254111.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR014327: IPR007627: IPR013249; KEGG: sli:Slin_2375 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254112.1 COGs: COG0328 Ribonuclease HI; InterPro IPR002156; KEGG: fjo:Fjoh_1135 ribonuclease H; PFAM: Ribonuclease H; PRIAM: Ribonuclease H; SPTR: Ribonuclease HI; PFAM: RNase H YP_004254113.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: bcy:Bcer98_0534 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: L-threonine 3-dehydrogenase; SPTR: uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase YP_004254114.1 COGs: COG0557 Exoribonuclease R; InterProIPR011805: IPR004476: IPR013223: IPR001900: IPR 003029: IPR011129; KEGG: bvu:BVU_1091 ribonuclease R; PFAM: Ribonuclease II/R; Ribonuclease B, N-terminal OB domain; Ribosomal protein S1, RNA binding domain; SPTR: Ribonuclease R; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease B OB domain; RNB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases YP_004254115.1 COGs: COG1966 Carbon starvation protein predicted membrane protein; InterPro IPR003706; KEGG: bth:BT_1742 carbon starvation protein A; PFAM: Carbon starvation protein CstA; SPTR: Carbon starvation protein A; PFAM: Carbon starvation protein CstA YP_004254116.1 COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: pdi:BDI_3704 metalloendopeptidase-like membrane protein; PFAM: Peptidase M23; SPTR: uncharacterized protein; PFAM: Peptidase M23 YP_004254117.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: dfe:Dfer_4773 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF58 YP_004254118.1 COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR005746: IPR013766; KEGG: phe:Phep_0867 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_004254119.1 COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004805: IPR004013: IPR011708: IPR004365: IPR 003141; KEGG: pdi:BDI_3484 DNA polymerase III alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_004254120.1 COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR004607: IPR002376; KEGG: coc:Coch_0719 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; PRIAM: Phosphoribosylglycinamide formyltransferase; SPTR: Phosphoribosylglycinamide formyltransferase; TIGRFAM: Phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent YP_004254121.1 COGs: COG0236 Acyl carrier protein; HAMAP: Acyl carrier protein (ACP); InterPro IPR003231: IPR006163; KEGG: pmz:HMPREF0659_A5004 acyl carrier protein; PFAM: Phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP); PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein YP_004254122.1 COGs: COG0304 3-oxoacyl-ACP synthase; InterPro IPR017568: IPR014030: IPR014031; KEGG: gfo:GFO_3383 3-oxoacyl-ACP synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: Beta-ketoacyl-acyl-carrier-protein synthase II; TIGRFAM: 3-oxoacyl-ACP synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II YP_004254123.1 COGs: COG0571 dsRNA-specific ribonuclease; HAMAP: Ribonuclease III, bacterial; InterPro IPR011907: IPR000999: IPR001159; KEGG: bth:BT_3357 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA binding; PRIAM: Ribonuclease III; SMART: Ribonuclease III; Double-stranded RNA binding; SPTR: uncharacterized protein; TIGRFAM: Ribonuclease III, bacterial; PFAM: Double-stranded RNA binding motif; RNase3 domain; TIGRFAM: ribonuclease III, bacterial YP_004254124.1 COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); HAMAP: Translation elongation factor P; InterPro IPR011768: IPR013185: IPR001059: IPR015365; KEGG: pgi:PG1274 elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; SPTR: Elongation factor P; TIGRFAM: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P YP_004254125.1 KEGG: plm:Plim_4225 hypothetical protein; SPTR: uncharacterized protein YP_004254126.1 KEGG: pop:POPTR_555784 hypothetical protein YP_004254127.1 InterPro IPR010432; KEGG: gfo:GFO_1005 RDD family protein; PFAM: RDD; SPTR: RDD family membrane protein; PFAM: RDD family YP_004254128.1 COGs: COG1300 membrane protein; InterPro IPR002798; KEGG: sli:Slin_4959 protein of unknown function DUF95 transmembrane; PFAM: Protein of unknown function DUF95, transmembrane; SPTR: uncharacterized protein; PFAM: Integral membrane protein DUF95 YP_004254129.1 KEGG: phe:Phep_0234 hypothetical protein; SPTR: uncharacterized protein YP_004254130.1 KEGG: fbc:FB2170_15538 hypothetical protein; SPTR: uncharacterized protein YP_004254131.1 KEGG: sli:Slin_4962 hypothetical protein; SPTR: uncharacterized protein YP_004254132.1 COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: sli:Slin_4963 ATPase associated with various cellular activities AAA_3; PFAM: ATPase, AAA-3; SPTR: ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities (AAA) YP_004254133.1 COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: fjo:Fjoh_2227 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF58 YP_004254134.1 InterPro IPR011701; KEGG: gbm:Gbem_1224 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1; PFAM: Bacterial protein of unknown function (DUF894) YP_004254135.1 KEGG: dde:Dde_2335 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556 YP_004254136.1 COGs: COG3746 Phosphate-selective porin; InterPro IPR010870; KEGG: bfr:BF2289 polyphosphate-selective porin O; PFAM: Phosphate-selective porin O/P; SPTR: Polyphosphate-selective porin O; PFAM: Phosphate-selective porin O and P YP_004254137.1 InterPro IPR018637; KEGG: bfs:BF4352 hypothetical protein; PFAM: Protein of unknown function DUF2059; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2059) YP_004254138.1 KEGG: cbt:CLH_2928 hypothetical protein; SPTR: Glycosyltransferase YP_004254139.1 COGs: COG0550 Topoisomerase IA; InterProIPR005738: IPR006171: IPR013497: IPR006154: IPR 003601: IPR003602; KEGG: pdi:BDI_1687 DNA topoisomerase; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; SPTR: uncharacterized protein; TIGRFAM: DNA topoisomerase III, bacterial-type; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid YP_004254140.1 KEGG: phe:Phep_3152 hypothetical protein; SPTR: uncharacterized protein YP_004254141.1 COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: bfs:pBF9343.01 resolvase/DNA invertase; PFAM: Resolvase, N-terminal; SPTR: DNA-invertase hin; PFAM: Resolvase, N terminal domain YP_004254142.1 COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: bth:BT_1717 lipopolysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Lipopolysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein YP_004254143.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: bfr:BF2581 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004254144.1 COGs: COG0439 Biotin carboxylase; KEGG: bth:BT_3374 carbamoyl-phosphate-synthetase; SPTR: uncharacterized protein; PFAM: D-ala D-ala ligase C-terminus YP_004254145.1 KEGG: amu:Amuc_1173 hypothetical protein; SPTR: uncharacterized protein YP_004254146.1 KEGG: kol:Kole_1186 GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family YP_004254147.1 COGs: COG0331 ACP S-malonyltransferase; InterPro IPR014043; KEGG: bth:BT_0789 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; PRIAM: ACP S-malonyltransferase; SPTR: ACP S-malonyltransferase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_004254148.1 KEGG: bfr:BF0819 acyl carrier protein; SPTR: Acyl carrier protein; PFAM: Phosphopantetheine attachment site YP_004254149.1 COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: pdi:BDI_0566 3-oxoacyl-ACP reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-ACP reductase; SPTR: uncharacterized protein; PFAM: short chain dehydrogenase YP_004254150.1 COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein; InterPro IPR000873; KEGG: cff:CFF8240_1466 amino acid adenylation domain-containing protein; PFAM: AMP-dependent synthetase/ligase; PRIAM: Phenylalanine racemase (ATP-hydrolyzing); SPTR: Amino acid adenylation domain protein; PFAM: AMP-binding enzyme; TIGRFAM: amino acid adenylation domain YP_004254151.1 InterPro IPR000182; KEGG: cff:CFF8240_1465 Cj81-29; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase; PFAM: Acetyltransferase (GNAT) family YP_004254152.1 KEGG: ere:EUBREC_2665 hypothetical protein; SPTR: uncharacterized protein; PFAM: Phosphopantetheine attachment site YP_004254153.1 COGs: COG0332 3-oxoacyl-ACP; InterPro IPR013751: IPR013747; KEGG: caa:Caka_2372 beta-ketoacyl-acyl-carrier-protein synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase III; SPTR: 3-oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal domain protein; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-ACP synthase III YP_004254154.1 COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: bfr:BF0826 hypothetical protein; SPTR: uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily YP_004254155.1 InterPro IPR001173; KEGG: bth:BT_3372 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase; PFAM: Glycosyl transferase 2 YP_004254156.1 KEGG: vfi:VF_2581 hypothetical protein; SPTR: O-antigen polymerase superfamily protein YP_004254157.1 KEGG: gka:GK3313 glycosyltransferase; SPTR: Glycosyltransferase YP_004254158.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: bth:BT_1340 lipopolysaccharide biosynthesis glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: lipopolysaccharide biosynthesis glycosyltransferase; PFAM: Glycosyl transferase 2 YP_004254159.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: bfr:BF3647 UDP-galactose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-N-acetylglucosamine 4-epimerase; SPTR: UDP-galactose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase YP_004254160.1 InterPro IPR002934; KEGG: bvu:BVU_2668 hypothetical protein; PFAM: Nucleotidyltransferase; SPTR: Nucleotidyltransferase domain protein; PFAM: Nucleotidyltransferase domain YP_004254161.1 KEGG: dba:Dbac_3272 hypothetical protein; SPTR: Toxin-antitoxin system, antitoxin component family protein YP_004254162.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005907: IPR005835; KEGG: bfs:BF3453 LPS biosynthesis related glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form YP_004254163.1 InterPro IPR002934; KEGG: bth:BT_4140 hypothetical protein; PFAM: Nucleotidyltransferase; SPTR: Nucleotidyltransferase domain; PFAM: Nucleotidyltransferase domain YP_004254164.1 COGs: COG1895 conserved hypothetical protein related to C-terminal domain of eukaryotic chaperone SACSIN; InterPro IPR007842; KEGG: mta:Moth_1564 hypothetical protein; PFAM: HEPN; SPTR: toxin-antitoxin system, antitoxin component; PFAM: HEPN domain YP_004254165.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: bth:BT_0464 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_004254166.1 COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR005888: IPR001509; KEGG: bvu:BVU_2405 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_004254167.1 InterPro IPR006645; KEGG: bvu:BVU_2669 transcriptional regulator UpxY-like protein; PFAM: Transcription antitermination protein, NusG, N-terminal; SPTR: uncharacterized protein; PFAM: Transcription termination factor nusG YP_004254168.1 KEGG: pru:PRU_2418 HicB family protein; SPTR: HicB family protein YP_004254169.1 KEGG: pgi:PG2078 hypothetical protein; SPTR: Archaeal ATPase; PFAM: Archaeal ATPase YP_004254170.1 COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: bvu:BVU_1534 UDP-ManNAc dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: uncharacterized protein; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004254171.1 COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: bfr:BF1100 UDP-GlcNAc 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase YP_004254172.1 COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869: IPR013692; KEGG: geo:Geob_1458 polysaccharide biosynthesis protein CapD; PFAM: Polysaccharide biosynthesis protein CapD-like; Polysaccharide biosynthesis C-terminal; PRIAM: UDP-glucose 4-epimerase; SPTR: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: Polysaccharide biosynthesis protein; Polysaccharide biosynthesis protein C-terminal YP_004254173.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: cti:RALTA_A2371 pyridoxal-phosphate-dependent aminotransferase; exported protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004254174.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: cti:RALTA_A2371 pyridoxal-phosphate-dependent aminotransferase; exported protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004254175.1 COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR001451; KEGG: cla:Cla_0811 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: Bacterial transferase hexapeptide repeat; SPTR: uncharacterized protein; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_004254176.1 COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: bfr:BF3658 flippase; PFAM: Polysaccharide biosynthesis protein; SPTR: Predicted protein; PFAM: Polysaccharide biosynthesis protein YP_004254177.1 COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: bvu:BVU_2666 O-acetyltransferase Cps9vM; SPTR: transferase hexapeptide repeat YP_004254178.1 COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: bay:RBAM_031230 SpsC1; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: SpsC1; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004254179.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: clj:CLJU_c05300 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Predicted protein; PFAM: Glycosyl transferase 2 YP_004254180.1 COGs: COG2348 Uncharacterized protein involved in methicillin resistance; KEGG: cvi:CV_4023 hypothetical protein; SPTR: uncharacterized protein; PFAM: FemAB family YP_004254181.1 KEGG: bvu:BVU_2947 hypothetical protein; SPTR: uncharacterized protein YP_004254182.1 KEGG: ajs:Ajs_3024 hypothetical protein; SPTR: Predicted protein; PFAM: O-Antigen ligase YP_004254183.1 KEGG: mms:mma_2263 hypothetical protein; SPTR: Predicted protein YP_004254184.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rcm:A1E_03785 hypothetical protein; PFAM: Glycosyl transferase, group 1; SPTR: uncharacterized protein; PFAM: Glycosyl transferases group 1 YP_004254185.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: bth:BT_1340 lipopolysaccharide biosynthesis glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: lipopolysaccharide biosynthesis glycosyltransferase; PFAM: Glycosyl transferase 2 YP_004254186.1 COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835; KEGG: pdi:BDI_0650 glucose-1-phosphate thymidyl transferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_004254187.1 COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: bth:BT_0464 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: uncharacterized protein; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_004254188.1 InterPro IPR006645; KEGG: bvu:BVU_2669 transcriptional regulator UpxY-like protein; PFAM: Transcription antitermination protein, NusG, N-terminal; SPTR: uncharacterized protein; PFAM: Transcription termination factor nusG YP_004254189.1 KEGG: pru:PRU_2418 HicB family protein; SPTR: HicB family protein YP_004254190.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: bvu:BVU_1980 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004254191.1 InterPro IPR012944; KEGG: bvu:BVU_1979 hypothetical protein; PFAM: RagB/SusD; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: SusD family YP_004254193.1 KEGG: cpr:CPR_1627 hypothetical protein; SPTR: Conserved domain protein; PFAM: Aminotransferase class I and II YP_004254194.1 InterPro IPR000866; KEGG: bcu:BCAH820_1566 thiol-disulfide oxidoreductase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin YP_004254195.1 KEGG: spu:589347 similar to monoamine oxidase A YP_004254196.1 COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006323: IPR005834; KEGG: pdi:BDI_2852 phosphonoacetaldehyde hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; PRIAM: Phosphonoacetaldehyde hydrolase; SPTR: uncharacterized protein; TIGRFAM: Phosphonoacetaldehyde hydrolase; TIGRFAM: phosphonoacetaldehyde hydrolase YP_004254197.1 COGs: COG2954 conserved hypothetical protein; InterPro IPR008172; KEGG: bfs:BF0324 hypothetical protein; PFAM: Adenylate cyclase; SPTR: uncharacterized protein; PFAM: CYTH domain YP_004254198.1 InterPro IPR018967: IPR006622; KEGG: mpd:MCP_2139 hypothetical protein; PFAM: Iron sulphur-containing domain, CDGSH-type; SPTR: Zinc finger CDGSH type superfamily; PFAM: Iron-binding zinc finger CDGSH type; Protein of unknown function (DUF1271) YP_004254199.1 KEGG: apt:APA01_08870 fucolectin tachylectin-4 pentraxin-1; SPTR: Fucolectin tachylectin-4 pentraxin-1 YP_004254200.1 InterPro IPR000866; KEGG: bfs:BF2739 lipoprotein/thioderoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004254201.1 InterPro IPR000866; KEGG: cpi:Cpin_1834 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004254202.1 KEGG: phe:Phep_0726 RagB/SusD domain protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004254203.1 InterPro IPR012910: IPR000531; KEGG: phe:Phep_0725 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004254204.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_3173 FecR protein; PFAM: FecR protein; SPTR: FecR protein; PFAM: FecR protein YP_004254205.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: bvu:BVU_2218 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004254206.1 COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: dfe:Dfer_4334 protein of unknown function DUF477; PFAM: Protein of unknown function DUF477; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF477) YP_004254207.1 COGs: COG3762 membrane protein; InterPro IPR007621; KEGG: chu:CHU_3703 hypothetical protein; PFAM: Protein of unknown function DUF477; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF477) YP_004254208.1 COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: pdi:BDI_1047 hypothetical protein; PFAM: LemA; SPTR: uncharacterized protein; PFAM: LemA family YP_004254209.1 KEGG: sli:Slin_4441 hypothetical protein; SPTR: uncharacterized protein YP_004254210.1 COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004481: IPR004837; KEGG: bfs:BF4331 transmembrane K+ dependent Na+/Ca+ exchanger-related protein; PFAM: Sodium/calcium exchanger membrane region; SPTR: uncharacterized protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein YP_004254211.1 KEGG: bth:BT_1898 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3137) YP_004254212.1 COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: bth:BT_1897 hypothetical protein; PFAM: LemA; SPTR: uncharacterized protein; PFAM: LemA family YP_004254213.1 COGs: COG1280 threonine efflux protein; InterPro IPR001123; KEGG: bld:BLi02238 hypothetical protein; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Lysine exporter protein; PFAM: LysE type translocator YP_004254214.1 COGs: COG3304 membrane protein; InterPro IPR005185; KEGG: pru:PRU_1184 hypothetical protein; PFAM: Protein of unknown function DUF307; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF307) YP_004254215.1 KEGG: bth:BT_0777 hypothetical protein; SPTR: uncharacterized protein YP_004254216.1 COGs: COG2236 phosphoribosyltransferase; InterPro IPR000836; KEGG: tra:Trad_0659 phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; SPTR: uncharacterized protein; PFAM: Phosphoribosyl transferase domain YP_004254217.1 COGs: COG2006 conserved hypothetical protein; InterPro IPR006311; KEGG: bth:BT_0776 hypothetical protein; SPTR: Tat (Twin-arginine translocation) pathway signal sequence; PFAM: Domain of unknown function (DUF362); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_004254218.1 COGs: COG0348 Polyferredoxin; KEGG: bth:BT_0775 ferredoxin-type protein; SPTR: uncharacterized protein YP_004254219.1 COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR001902: IPR011547: IPR002645; KEGG: pdi:BDI_3031 sulfate transporter permease; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; SPTR: uncharacterized protein; TIGRFAM: Sulphate anion transporter; PFAM: Sulfate transporter family; STAS domain; TIGRFAM: anti-anti-sigma factor; high affinity sulphate transporter 1 YP_004254220.1 KEGG: bvu:BVU_1125 hypothetical protein; SPTR: uncharacterized protein YP_004254221.1 InterPro IPR003059; KEGG: bvu:BVU_1125 hypothetical protein; PFAM: Colicin lysis protein; SPTR: uncharacterized protein YP_004254222.1 KEGG: aco:Amico_1405 metal dependent phosphohydrolase; SPTR: Metal dependent phosphohydrolase YP_004254223.1 COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; KEGG: dol:Dole_2113 amidophosphoribosyltransferase; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: amidophosphoribosyltransferase YP_004254224.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR014284: IPR014327: IPR007627: IPR013249: IPR 000792; KEGG: phe:Phep_0443 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70 region 2; Bacterial regulatory proteins, luxR family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254225.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2448 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004254226.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: phe:Phep_0725 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004254227.1 KEGG: phe:Phep_0726 RagB/SusD domain protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004254228.1 KEGG: mst:Msp_1282 protein kinase; SPTR: O-linked GLCNAC transferase YP_004254229.1 COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104: IPR006102: IPR006103: IPR004199; KEGG: bfs:BF0157 exported beta-galactosidase; PFAM: Glycoside hydrolase 2, TIM barrel; Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase, family 42, domain 5; PRIAM: Beta-galactosidase; SPTR: uncharacterized protein; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Beta galactosidase small chain YP_004254230.1 COGs: COG1294 Cytochrome bd-type quinol oxidase subunit 2; InterPro IPR003317; KEGG: pdi:BDI_2649 cytochrome d ubiquinol oxidase subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II; SPTR: Cytochrome D ubiquinol oxidase subunit II; PFAM: Cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB) YP_004254231.1 COGs: COG1271 Cytochrome bd-type quinol oxidase subunit 1; InterPro IPR002585; KEGG: pdi:BDI_2648 cytochrome d ubiquinol oxidase subunit I; PFAM: Cytochrome bd ubiquinol oxidase, subunit I; SPTR: uncharacterized protein; PFAM: Bacterial Cytochrome Ubiquinol Oxidase YP_004254232.1 KEGG: dps:DP0927 hypothetical protein; SPTR: uncharacterized protein YP_004254233.1 COGs: COG0628 permease; InterPro IPR002549; KEGG: rbi:RB2501_13204 hypothetical protein; PFAM: Uncharacterised protein family UPF0118; SPTR: FAD synthase; PFAM: Domain of unknown function DUF20 YP_004254234.1 KEGG: pdi:BDI_2796 hypothetical protein; SPTR: uncharacterized protein YP_004254235.1 KEGG: ecb:100009695 selectin P (granule membrane protein 140kDa, antigen CD62); SPTR: P-selectin YP_004254236.1 KEGG: bvu:BVU_0066 hypothetical protein; SPTR: uncharacterized protein YP_004254237.1 KEGG: shi:Shel_11830 hypothetical protein; SPTR: uncharacterized protein YP_004254238.1 COGs: COG0466 ATP-dependent Lon protease; InterPro IPR004815: IPR003111: IPR003959: IPR003593; KEGG: fbc:FB2170_15303 ATP-dependent protease; PFAM: Peptidase S16, lon N-terminal; ATPase, AAA-type, core; PRIAM: Endopeptidase La; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; SPTR: ATP-dependent protease La; TIGRFAM: Peptidase S16, ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La YP_004254239.1 COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: fjo:Fjoh_0109 50S ribosomal protein L31 type B; PFAM: Ribosomal protein L31; SPTR: 50S ribosomal protein L31; TIGRFAM: Ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_004254240.1 KEGG: pph:Ppha_2616 death-on-curing family protein; SPTR: Death-on-curing family protein; PFAM: Fic/DOC family YP_004254241.1 COGs: COG1496 conserved hypothetical protein; InterPro IPR003730; KEGG: hau:Haur_1551 hypothetical protein; PFAM: Multi-copper polyphenol oxidoreductase, laccase; SPTR: ABC transporter, permease; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family YP_004254242.1 COGs: COG1380 effector of murein hydrolase LrgA; InterPro IPR005538; KEGG: pdi:BDI_2586 hypothetical protein; PFAM: LrgA; SPTR: Integral membrane protein; PFAM: LrgA family YP_004254243.1 COGs: COG1346 effector of murein hydrolase; InterPro IPR007300; KEGG: pdi:BDI_2587 hypothetical protein; PFAM: LrgB-like protein; SPTR: uncharacterized protein; PFAM: LrgB-like family; TIGRFAM: conserved hypothetical protein TIGR00659 YP_004254244.1 COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR011268: IPR011270: IPR000845; KEGG: bth:BT_1881 purine nucleoside phosphorylase; PFAM: Nucleoside phosphorylase; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: Purine nucleoside phosphorylase I, inosine/guanosine-specific; Inosine guanosine/xanthosine phosphorylase; PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase YP_004254245.1 COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; InterPro IPR003758; KEGG: bth:BT_1880 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase YP_004254246.1 COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004634: IPR004635: IPR002142; KEGG: bth:BT_1879 protease IV; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA, 67K type; TIGRFAM: Peptidase S49, protease IV; Peptidase S49, SppA; PFAM: Peptidase S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type YP_004254247.1 COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro IPR005750: IPR001986; KEGG: bvu:BVU_1648 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: uncharacterized protein; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004254248.1 COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: sli:Slin_4404 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR: uncharacterized protein; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_004254249.1 KEGG: bvu:BVU_1647 hypothetical protein; SPTR: uncharacterized protein YP_004254250.1 COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: bfs:BF2555 helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase; PFAM: UvrD/REP helicase YP_004254251.1 KEGG: pmz:HMPREF0659_A5873 hypothetical protein; SPTR: uncharacterized protein YP_004254252.1 KEGG: pdi:BDI_3216 hypothetical protein; SPTR: uncharacterized protein YP_004254253.1 KEGG: bth:BT_2343 hypothetical protein YP_004254254.1 COGs: COG3449 DNA gyrase inhibitor; InterPro IPR000005: IPR010499: IPR018060; KEGG: bth:BT_1904 transcriptional regulator, AraC-type; PFAM: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: uncharacterized protein; PFAM: Bacterial transcription activator, effector binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family YP_004254256.1 KEGG: hmg:100202672 similar to hAT family dimerisation domain containing protein YP_004254257.1 KEGG: rbi:RB2501_16009 DNA repair protein RecN; SPTR: DNA repair protein RecN YP_004254258.1 InterPro IPR018004; KEGG: pdi:BDI_3263 hypothetical protein; PFAM: KilA, N-terminal/APSES-type HTH, DNA-binding; SPTR: uncharacterized protein; PFAM: KilA-N domain YP_004254259.1 KEGG: bmy:Bm1_41710 hypothetical protein; SPTR: Predicted protein YP_004254261.1 KEGG: chy:CHY_2650 hypothetical protein; SPTR: uncharacterized protein YP_004254262.1 KEGG: fps:FP1536 hypothetical protein; SPTR: uncharacterized protein YP_004254263.1 KEGG: fps:FP1989 inward rectifier potassium channel Irk; SPTR: Inward rectifier potassium channel Irk YP_004254264.1 KEGG: cjk:jk0344 hypothetical protein YP_004254265.1 COGs: COG1576 conserved hypothetical protein; HAMAP: SPOUT methyltransferase, predicted; InterPro IPR003742; KEGG: pdi:BDI_2084 rRNA large subunit methyltransferase; PFAM: SPOUT methyltransferase, predicted; SPTR: Ribosomal RNA large subunit methyltransferase H; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH YP_004254266.1 COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003660: IPR003661: IPR003594; KEGG: cpi:Cpin_6300 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_004254267.1 KEGG: gfo:GFO_0360 sensor/regulator hybrid; SPTR: uncharacterized protein YP_004254268.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: bba:Bd2366 heptosyltransferase; PFAM: Glycosyl transferase, family 9; SPTR: uncharacterized protein; PFAM: Glycosyltransferase 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II YP_004254269.1 COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR010168: IPR002933: IPR011650; KEGG: chu:CHU_0130 N-acyl-L-amino acid amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: N-acyl-L-amino acid amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase YP_004254270.1 InterPro IPR011467; KEGG: pdi:BDI_3745 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1573) YP_004254271.1 COGs: COG1183 Phosphatidylserine synthase; InterPro IPR004533: IPR000462; KEGG: pdi:BDI_2569 CDP-diacylglycerol-serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol-serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase YP_004254272.1 KEGG: zpr:ZPR_0077 hypothetical protein; SPTR: uncharacterized protein YP_004254273.1 COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR005886: IPR001509; KEGG: bvu:BVU_3883 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: UDP-glucose-4-epimerase YP_004254274.1 COGs: COG0297 Glycogen synthase; InterPro IPR013534; KEGG: bvu:BVU_2897 glycosyl transferase; PFAM: Starch synthase, catalytic domain; SPTR: uncharacterized protein; PFAM: Starch synthase catalytic domain YP_004254275.1 COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: pru:PRU_2206 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein BACINT_04611; PFAM: Uncharacterised protein family UPF0102 YP_004254276.1 InterPro IPR003718; KEGG: dds:Ddes_1698 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC/Ohr family protein; PFAM: OsmC-like protein YP_004254277.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cpi:Cpin_0690 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase YP_004254278.1 COGs: COG0216 Protein chain release factor A; HAMAP: Peptide chain release factor 1; InterPro IPR004373: IPR005139: IPR000352; KEGG: bfs:BF0832 peptide chain release factor 1; PFAM: Peptide chain release factor; Class I peptide chain release factor; SPTR: Peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1 YP_004254279.1 COGs: COG0284 Orotidine-5'-phosphate decarboxylase; HAMAP: Orotidine 5'-phosphate decarboxylase; InterPro IPR011995: IPR001754; KEGG: bvu:BVU_0095 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: uncharacterized protein; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 2, core; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2 YP_004254280.1 COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200; KEGG: dat:HRM2_23340 periplasmic soluble lytic transglycosylase fused to ABC-type amino acid-binding protein (SLT domain fusion protein); PFAM: HAD superfamily hydrolase-like, type 3; SPTR: Periplasmic soluble lytic transglycosylase fused to ABC-type amino acid-binding protein (SLT domain fusion protein); PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB YP_004254281.1 COGs: COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; InterPro IPR013749; KEGG: bvu:BVU_0872 pyridoxamine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; SPTR: uncharacterized protein; PFAM: Phosphomethylpyrimidine kinase YP_004254282.1 COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: bth:BT_4339 glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; SPTR: uncharacterized protein; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal YP_004254283.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: cpi:Cpin_3053 DNA mismatch repair protein MutS domain protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; SPTR: mismatch repair-like protein; PFAM: MutS domain V; MutS domain III YP_004254284.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: cpi:Cpin_2667 DNA mismatch repair protein MutS domain protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; SPTR: mismatch repair-like protein; PFAM: MutS domain V; MutS domain III YP_004254285.1 COGs: COG1277 ABC-type transport system involved in multi-copper enzyme maturation permease component; InterPro IPR019196; KEGG: cpi:Cpin_3052 ABC-type transport system involved in multi-copper enzyme maturation permease component; PFAM: ABC-type uncharacterised transport system; SPTR: uncharacterized protein; PFAM: ABC-type uncharacterized transport system YP_004254286.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: cpi:Cpin_3051 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein; PFAM: ABC transporter YP_004254287.1 KEGG: bth:BT_3274 hypothetical protein; SPTR: uncharacterized protein YP_004254288.1 KEGG: bth:BT_3273 hypothetical protein; SPTR: uncharacterized protein YP_004254289.1 KEGG: bth:BT_3272 outer membrane protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004254290.1 COGs: COG1484 DNA replication protein; InterPro IPR002611: IPR003593; KEGG: nha:Nham_2786 IstB-like ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; SPTR: Y4pL; manually curated; PFAM: IstB-like ATP binding protein YP_004254291.1 COGs: COG4584 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: bvu:BVU_3767 transposase; PFAM: Integrase, catalytic core; SPTR: ISPsy14, transposase; PFAM: Integrase core domain YP_004254292.1 KEGG: bth:BT_0296 xanthan lyase XalB precursor; SPTR: Xanthan lyase XalB YP_004254293.1 KEGG: bth:BT_0296 xanthan lyase XalB precursor; SPTR: uncharacterized protein YP_004254294.1 COGs: COG5421 Transposase; InterPro IPR002559; KEGG: cph:Cpha266_0325 transposase, IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family; PFAM: Transposase DDE domain YP_004254295.1 KEGG: zpr:ZPR_0252 hypothetical protein; SPTR: uncharacterized protein YP_004254296.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: zpr:ZPR_0253 TonB-dependent receptor Plug domain protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004254297.1 KEGG: fjo:Fjoh_2392 hypothetical protein; SPTR: uncharacterized protein YP_004254298.1 COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: bvu:BVU_1371 ribonuclease HII; PFAM: Ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease; PFAM: Ribonuclease HII YP_004254299.1 InterPro IPR004993; KEGG: rbi:RB2501_03340 plant auxin-regulated protein; PFAM: GH3 auxin-responsive promoter; SPTR: Auxin-regulated protein; PFAM: GH3 auxin-responsive promoter YP_004254300.1 InterPro IPR004843; KEGG: cpi:Cpin_5275 hypothetical protein; PFAM: Metallophosphoesterase; SPTR: uncharacterized protein; PFAM: Calcineurin-like phosphoesterase YP_004254301.1 KEGG: bfs:BF3023 hypothetical protein; SPTR: uncharacterized protein YP_004254302.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: zpr:ZPR_1753 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254303.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0327 FecR protein; PFAM: FecR protein; SPTR: FecR protein; PFAM: FecR protein YP_004254304.1 InterPro IPR011662: IPR012910: IPR000531; KEGG: bth:BT_2968 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_004254305.1 InterPro IPR012944; KEGG: bth:BT_2858 hypothetical protein; PFAM: RagB/SusD; SPTR: SusD homolog; PFAM: SusD family YP_004254306.1 KEGG: bth:BT_3158 hypothetical protein; SPTR: uncharacterized protein YP_004254307.1 InterPro IPR000421; KEGG: bth:BT_2917 hypothetical protein; PFAM: Coagulation factor 5/8 type, C-terminal; SPTR: uncharacterized protein; PFAM: F5/8 type C domain YP_004254308.1 COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165: IPR012792; KEGG: pgn:PGN_1162 CoA transferase subunit A; PFAM: Coenzyme A transferase; PRIAM: Acetate CoA-transferase; SPTR: uncharacterized protein; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit YP_004254309.1 KEGG: kol:Kole_0966 thioesterase superfamily protein; SPTR: uncharacterized protein; PFAM: Thioesterase superfamily YP_004254310.1 COGs: COG3246 conserved hypothetical protein; InterPro IPR008567; KEGG: fnu:FN1868 cytoplasmic protein; PFAM: Protein of unknown function DUF849, prokaryotic; SPTR: 3-keto-5-aminohexanoate cleavage enzyme; PFAM: Prokaryotic protein of unknown function (DUF849) YP_004254311.1 COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013149; KEGG: pgn:PGN_1165 hypothetical protein; PFAM: Alcohol dehydrogenase, zinc-binding; SPTR: Alcohol dehydrogenase zinc-binding domain protein; PFAM: Zinc-binding dehydrogenase YP_004254312.1 COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR007197: IPR003739; KEGG: pgn:PGN_1166 L-lysine 2,3-aminomutase; PFAM: Radical SAM; PRIAM: Lysine 2,3-aminomutase; SPTR: uncharacterized protein; TIGRFAM: lysine-2,3-aminomutase; Protein of unknown function DUF160; PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; TIGRFAM: KamA family protein; lysine-2,3-aminomutase YP_004254313.1 KEGG: pgn:PGN_1167 hypothetical protein; SPTR: uncharacterized protein YP_004254314.1 COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: pgn:PGN_1168 probable DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; SPTR: uncharacterized protein; PFAM: MutS domain V YP_004254315.1 InterPro IPR015130; KEGG: pgn:PGN_1169 D-lysine 5,6-aminomutase alpha subunit; PFAM: D-Lysine 5,6-aminomutase alpha subunit; SPTR: uncharacterized protein; PFAM: D-Lysine 5,6-aminomutase alpha subunit YP_004254316.1 COGs: COG5012 cobalamin binding protein; InterPro IPR006158; KEGG: pgn:PGN_1170 D-lysine 5,6-aminomutase beta subunit; PFAM: Cobalamin (vitamin B12)-binding; SPTR: uncharacterized protein; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain YP_004254317.1 COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165: IPR012791; KEGG: pgi:PG1075 coenzyme A transferase, beta subunit; PFAM: Coenzyme A transferase; PRIAM: Acetate CoA-transferase; SPTR: uncharacterized protein; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit YP_004254318.1 COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092: IPR006091: IPR006090; KEGG: pgn:PGN_1172 acyl-CoA dehydrogenase short-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; PRIAM: Butyryl-CoA dehydrogenase; SPTR: uncharacterized protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_004254319.1 COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: bpo:BP951000_1041 electron transfer flavoprotein subunit beta; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: uncharacterized protein; PFAM: Electron transfer flavoprotein domain YP_004254320.1 COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730: IPR014731; KEGG: pgn:PGN_1174 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: uncharacterized protein; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain YP_004254321.1 COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: cbi:CLJ_B3474 3-hydroxybutyryl-CoA dehydratase; PFAM: Crotonase, core; PRIAM: 3-hydroxybutyryl-CoA dehydratase; SPTR: 3-hydroxybutyryl-CoA dehydratase; PFAM: Enoyl-CoA hydratase/isomerase YP_004254322.1 COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176: IPR006108; KEGG: cdl:CDR20291_0914 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA dehydrogenase; SPTR: 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_004254323.1 KEGG: pdi:BDI_2507 hypothetical protein; SPTR: uncharacterized protein YP_004254324.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR000792: IPR014284; KEGG: phe:Phep_0443 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004254325.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: fjo:Fjoh_3803 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein YP_004254326.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: bth:BT_1939 outer membrane receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB-dependent Receptor Plug Domain YP_004254327.1 KEGG: bth:BT_1938 hypothetical protein; SPTR: uncharacterized protein YP_004254328.1 KEGG: bth:BT_1937 hypothetical protein; SPTR: uncharacterized protein YP_004254329.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: gfo:GFO_0265 M16 family peptidase; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase, family M16; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16) YP_004254330.1 KEGG: bth:BT_1936 hypothetical protein; SPTR: uncharacterized protein YP_004254331.1 InterPro IPR004155; KEGG: bth:BT_1935 hypothetical protein; SPTR: uncharacterized protein YP_004254332.1 InterPro IPR004155; KEGG: bth:BT_1934 hypothetical protein; SPTR: uncharacterized protein YP_004254333.1 InterPro IPR013766; KEGG: bvu:BVU_1978 disulphide-isomerase; PFAM: Thioredoxin domain; SPTR: disulphide-isomerase; PFAM: Thioredoxin YP_004254334.1 InterPro IPR012944; KEGG: zpr:ZPR_0383 hypothetical protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004254335.1 InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_2947 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004254336.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: pdi:BDI_0598 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004254337.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: fjo:Fjoh_3335 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254338.1 COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: pgn:PGN_1756 2-oxoglutarate oxidoreductase gamma subunit; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; SPTR: 2-oxoglutarate oxidoreductase, gamma subunit; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase YP_004254339.1 COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: pdi:BDI_1392 ketoisovalerate oxidoreductase subunit VorA; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: Ketoisovalerate oxidoreductase subunit VorA; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YP_004254340.1 COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880: IPR005476; KEGG: pdi:BDI_1391 2-ketoisovalerate ferredoxin reductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Transketolase, C-terminal; PRIAM: 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); SPTR: 2-oxoglutarate oxidoreductase, alpha subunit; PFAM: domain; Transketolase, C-terminal domain YP_004254341.1 KEGG: pgn:PGN_1752 ferredoxin 4Fe-4S; SPTR: uncharacterized protein; PFAM: 4Fe-4S binding domain YP_004254342.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: dat:HRM2_08130 AspC1; PFAM: Aminotransferase, class I/II; SPTR: AspC1; PFAM: Aminotransferase class I and II YP_004254343.1 COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: pdi:BDI_2025 transmembrane permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004254344.1 KEGG: gfo:GFO_3039 hypothetical protein; SPTR: uncharacterized protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_004254345.1 COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: fno:Fnod_1600 glucan endo-1,3-beta-D-glucosidase; PFAM: Glycoside hydrolase, family 16; SPTR: uncharacterized protein; PFAM: Glycosyl hydrolases family 16 YP_004254346.1 COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: bth:BT_2800 amidophosphoribosyl-transferase; PFAM: Phosphoribosyltransferase; SPTR: uncharacterized protein; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein YP_004254347.1 KEGG: bfs:BF0158 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2141) YP_004254348.1 KEGG: cpi:Cpin_1245 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3108) YP_004254349.1 KEGG: pdi:BDI_0186 hypothetical protein; SPTR: uncharacterized protein YP_004254350.1 COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: gfo:GFO_2399 secreted protein containing DUF1343; PFAM: Uncharacterised conserved protein UCP016719; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1343) YP_004254351.1 KEGG: bfs:BF0245 hypothetical protein; SPTR: Outer membrane assembly protein; PFAM: AsmA family YP_004254352.1 COGs: COG1669 nucleotidyltransferase; InterPro IPR002934; KEGG: pdi:BDI_1404 hypothetical protein; PFAM: Nucleotidyltransferase; SPTR: toxin-antitoxin system, toxin component; PFAM: Nucleotidyltransferase domain YP_004254353.1 COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: pdi:BDI_1586 nucleotidyltransferase; PFAM: Protein of unknown function DUF86; SPTR: toxin-antitoxin system, antitoxin component; PFAM: Protein of unknown function DUF86 YP_004254354.1 COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; KEGG: bvu:BVU_0092 phosphoribosylformylglycinamidine cyclo-ligase; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: uncharacterized protein; PFAM: AIR synthase related protein, C-terminal domain YP_004254355.1 KEGG: rsd:TGRD_341 metallo-protease FtsH; SPTR: Metallo-protease FtsH YP_004254356.1 COGs: COG2128 conserved hypothetical protein; InterPro IPR003779: IPR004675; KEGG: cpi:Cpin_7158 alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; SPTR: Alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase AhpD family core domain YP_004254357.1 COGs: COG1528 Ferritin-like protein; InterPro IPR008331; KEGG: bth:BT_1373 ferritin A; PFAM: Ferritin/Dps protein; PRIAM: Ferroxidase; SPTR: Ferritin; PFAM: Ferritin-like domain YP_004254358.1 InterPro IPR019563; KEGG: bvu:BVU_1004 glycoside hydrolase; PFAM: Glycoside hydrolase 97; SPTR: Glycoside hydrolase 97; PFAM: Glycoside hydrolase 97 YP_004254359.1 COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: pdi:BDI_2409 cell division protein FtsX; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: uncharacterized protein; PFAM: Predicted permease YP_004254360.1 KEGG: fps:FP2359 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3098) YP_004254361.1 COGs: COG1968 Uncharacterized bacitracin resistance protein; HAMAP: Bacitracin resistance protein BacA; InterPro IPR003824; KEGG: bvu:BVU_1171 undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; SPTR: Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP YP_004254362.1 COGs: COG0130 Pseudouridine synthase; HAMAP: tRNA pseudouridine synthase B; InterPro IPR002501: IPR014780; KEGG: cat:CA2559_04550 tRNA pseudouridine synthase; PFAM: Pseudouridine synthase II, TruB, N-terminal; SPTR: uncharacterized protein; TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase YP_004254363.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: Queuosine biosynthesis protein; InterPro IPR003699; KEGG: bvu:BVU_1173 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_004254364.1 COGs: COG4783 Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: ppd:Ppro_3278 peptidase M48, Ste24p; PFAM: Peptidase M48; SPTR: Peptidase, M48 family; PFAM: Peptidase M48 YP_004254365.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: phe:Phep_3321 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: uncharacterized protein; PFAM: Aminotransferase class I and II YP_004254366.1 COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: pdi:BDI_1192 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO YP_004254367.1 KEGG: bvu:BVU_3042 hypothetical protein; SPTR: uncharacterized protein; PFAM: RNA polymerase Rpb6 YP_004254368.1 COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382: IPR007085: IPR005252; KEGG: bvu:BVU_2892 flavoprotein; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: Flavoprotein; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic YP_004254369.1 COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; HAMAP: Aspartate carbamoyltransferase, eukaryotic; InterPro IPR006132: IPR006131: IPR002082; KEGG: bth:BT_0742 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase YP_004254370.1 COGs: COG1781 Aspartate carbamoyltransferase regulatory subunit; HAMAP: Aspartate transcarbamylase regulatory subunit; InterPro IPR020545: IPR020542: IPR002801; KEGG: bvu:BVU_3338 aspartate carbamoyltransferase regulatory subunit; PFAM: Aspartate carbamoyltransferase regulatory subunit, N-terminal; Aspartate carbamoyltransferase regulatory subunit, C-terminal; SPTR: Aspartate carbamoyltransferase regulatory chain; TIGRFAM: Aspartate transcarbamylase regulatory subunit; PFAM: Aspartate carbamoyltransferase regulatory chain, metal binding domain; Aspartate carbamoyltransferase regulatory chain, allosteric domain; TIGRFAM: aspartate carbamoyltransferase, regulatory subunit YP_004254371.1 COGs: COG1482 Phosphomannose isomerase; InterPro IPR001250; KEGG: pdi:BDI_1725 mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type I; PRIAM: Mannose-6-phosphate isomerase; SPTR: Mannose-6-phosphate isomerase; TIGRFAM: Mannose-6-phosphate isomerase, type I; PFAM: Phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I YP_004254372.1 KEGG: cch:Cag_0614 parallel beta-helix repeat-containing protein; SPTR: Parallel beta-helix repeat YP_004254373.1 COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: ilo:IL1473 alpha/beta fold family hydrolase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold YP_004254374.1 COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR001041; KEGG: pgi:PG1614 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; PFAM: Ferredoxin; SPTR: Succinate dehydrogenase subunit B; PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_004254375.1 COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953: IPR004112: IPR011280; KEGG: pgi:PG1615 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: Succinate dehydrogenase; SPTR: uncharacterized protein; TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup YP_004254376.1 InterPro IPR011138; KEGG: dfe:Dfer_3969 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; SPTR: Succinate dehydrogenase, cytochrome b558 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b558 subunit; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_004254377.1 COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764: IPR001466; KEGG: pdi:BDI_2338 glycoside hydrolase beta-glycosidase; PFAM: Glycoside hydrolase, family 3, N-terminal; Beta-lactamase-related; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Glycoside hydrolase beta-glycosidase; PFAM: Glycosyl hydrolase 3 N terminal domain; Beta-lactamase YP_004254378.1 InterPro IPR000866; KEGG: zpr:ZPR_1740 AhpC/TSA family protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: AhpC/TSA family protein; PFAM: AhpC/TSA family YP_004254379.1 KEGG: bfs:BF0990 outer membrane protein; SPTR: outer membrane protein YP_004254380.1 KEGG: fjo:Fjoh_1685 hypothetical protein; SPTR: Hypothetical lipoprotein YP_004254381.1 InterPro IPR006652; KEGG: bfs:BF3187 hypothetical protein; PFAM: Kelch repeat type 1; SPTR: uncharacterized protein YP_004254382.1 InterPro IPR001440: IPR019734; KEGG: bfs:BF1693 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat YP_004254383.1 COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB); HAMAP: Tryptophan synthase beta chain; InterPro IPR001926: IPR006316; KEGG: pdi:BDI_3266 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; PRIAM: Tryptophan synthase; SPTR: uncharacterized protein; TIGRFAM: Tryptophan synthase, beta chain-like; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme YP_004254384.1 KEGG: chu:CHU_1673 hypothetical protein; SPTR: uncharacterized protein YP_004254385.1 COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713: IPR013221: IPR004101; KEGG: cat:CA2559_05595 L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain YP_004254386.1 KEGG: cho:Chro.80388 oocyst wall protein 4 precursor; SPTR: Oocyst wall protein 4 YP_004254387.1 KEGG: dae:Dtox_1951 phosphate binding protein; SPTR: Phosphate binding protein YP_004254388.1 COGs: COG0205 6-phosphofructokinase; HAMAP: 6-phosphofructokinase; InterPro IPR000023; KEGG: aba:Acid345_1623 6-phosphofructokinase; PFAM: Phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; PFAM: Phosphofructokinase YP_004254389.1 COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: pdi:BDI_2023 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase, family 2; PFAM: Glycosyl transferase 2 YP_004254390.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: chu:CHU_1195 RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004254391.1 KEGG: cpi:Cpin_2225 hypothetical protein; SPTR: uncharacterized protein YP_004254392.1 InterPro IPR005632; KEGG: pdi:BDI_2091 hypothetical protein; PFAM: Outer membrane chaperone Skp (OmpH); SPTR: uncharacterized protein; PFAM: Outer membrane protein (OmpH-like) YP_004254393.1 KEGG: ppd:Ppro_0504 hypothetical protein; SPTR: uncharacterized protein; PFAM: Glycosyl transferase 2 YP_004254394.1 InterPro IPR013538; KEGG: cpi:Cpin_4985 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_004254395.1 COGs: COG2501 conserved hypothetical protein; KEGG: tdn:Suden_1502 RNA-binding S4; SPTR: RNA-binding S4 YP_004254396.1 COGs: COG2067 Long-chain fatty acid transport protein; InterPro IPR005017; KEGG: zpr:ZPR_0625 OMPP1/FadL/TodX family outer membrane protein transport protein; PFAM: Membrane protein, aromatic hydrocarbon degradation; SPTR: uncharacterized protein; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX) YP_004254397.1 KEGG: pdi:BDI_2423 glycoside hydrolase; PRIAM: Alpha-L-fucosidase; SPTR: uncharacterized protein YP_004254398.1 COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: sli:Slin_4718 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase YP_004254399.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284: IPR014327; KEGG: phe:Phep_0253 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254400.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bth:BT_3278 anti-sigma factor; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004254401.1 InterPro IPR000866; KEGG: cpi:Cpin_2082 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; manually curated; PFAM: AhpC/TSA family YP_004254402.1 KEGG: fre:Franean1_0134 serine/threonine protein kinase with PASTA sensor(s); SPTR: uncharacterized protein YP_004254403.1 COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: bfs:BF2739 lipoprotein/thioderoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004254404.1 COGs: COG0546 phosphatase; InterPro IPR005834: IPR006439; KEGG: cbk:CLL_A1060 HAD hydrolase, family IA; PFAM: Haloacid dehalogenase-like hydrolase; PRIAM: 5'-nucleotidase; SPTR: uncharacterized protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_004254405.1 InterPro IPR000504; KEGG: bfs:BF2734 RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNA-binding protein, RNP-1; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YP_004254406.1 KEGG: ptm:GSPATT00002679001 hypothetical protein; SPTR: Chromosome undetermined scaffold_6, whole genome shotgun sequence YP_004254407.1 COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR000728: IPR006283; KEGG: bvu:BVU_1601 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; PRIAM: Thiamine-phosphate kinase; SPTR: thiamine-monophosphate kinase; TIGRFAM: Thiamine-monophosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase YP_004254408.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825: IPR010231; KEGG: pgn:PGN_0357 cysteine desulfurase activator complex subunit SufB; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: ABC transporter membrane protein; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB YP_004254409.1 COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003439: IPR003593: IPR010230; KEGG: pdi:BDI_3537 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC YP_004254410.1 COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825: IPR011542; KEGG: bth:BT_3408 ABC transporter permease; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: uncharacterized protein; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1 YP_004254411.1 COGs: COG0520 Selenocysteine lyase; InterPro IPR000192: IPR010970; KEGG: bvu:BVU_1360 aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Selenocysteine lyase; SPTR: uncharacterized protein; TIGRFAM: Cysteine desulfurase, SufS; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily YP_004254412.1 COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: rbi:RB2501_05935 hypothetical protein; PFAM: Fe-S metabolism associated SufE; SPTR: uncharacterized protein; PFAM: Fe-S metabolism associated domain YP_004254413.1 COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744; KEGG: cak:Caul_2594 FeS assembly SUF system protein; PFAM: Protein of unknown function DUF59; SPTR: FeS assembly SUF system protein; PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein YP_004254414.1 InterPro IPR007730; KEGG: chu:CHU_2285 hypothetical protein; PFAM: Sporulation related domain; SPTR: uncharacterized protein; PFAM: Sporulation related domain YP_004254415.1 COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR007197: IPR010722; KEGG: aar:Acear_1233 iron-only hydrogenase maturation protein HydG; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; SPTR: Iron-only hydrogenase maturation protein HydG; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: thiazole biosynthesis protein ThiH YP_004254416.1 COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterPro IPR004108; KEGG: bfs:BF3662 iron hydrogenase; PFAM: Iron hydrogenase, large subunit, C-terminal; PRIAM: Ferredoxin hydrogenase; SPTR: Fe-hydrogenase large subunit family protein; PFAM: Iron only hydrogenase large subunit, C-terminal domain; 4Fe-4S binding domain YP_004254417.1 KEGG: sta:STHERM_c12340 hypothetical protein; SPTR: Hydrogenase large subunit; PFAM: Protein of unknown function (DUF1450) YP_004254418.1 InterPro IPR010822: IPR001932; KEGG: sfu:Sfum_1847 stage II sporulation E family protein; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Stage II sporulation E family protein; PFAM: Stage II sporulation protein E (SpoIIE) YP_004254419.1 COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterPro IPR007202; KEGG: sfu:Sfum_1846 PAS/PAC sensor protein; PFAM: Fe-S cluster; SPTR: PAS/PAC sensor protein; PFAM: Iron only hydrogenase large subunit, C-terminal domain; Fe-S cluster; 4Fe-4S binding domain YP_004254420.1 KEGG: pca:Pcar_1832 hypothetical protein; SPTR: uncharacterized protein; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit YP_004254421.1 COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335: IPR005791: IPR005665; KEGG: pdi:BDI_3608 bifunctional preprotein translocase subunit SecD/SecF; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: uncharacterized protein; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; SecF protein; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF YP_004254422.1 KEGG: phe:Phep_0863 hypothetical protein; SPTR: Clan AA aspartic protease; PFAM: Retroviral aspartyl protease YP_004254423.1 COGs: COG0039 Malate/lactate dehydrogenase; HAMAP: Malate dehydrogenase, NAD-dependent; InterPro IPR001236: IPR011275; KEGG: cpi:Cpin_1656 malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; SPTR: Malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent YP_004254424.1 COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: bfs:BF1601 aspartate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aspartate aminotransferase; PFAM: Aminotransferase class I and II YP_004254425.1 COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: cno:NT01CX_0285 MATE efflux family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: Mate efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; manually curated; PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_004254426.1 KEGG: pdi:BDI_3281 transcriptional regulator; SPTR: AraC family transcriptional regulator YP_004254427.1 COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; HAMAP: D-alanine--D-alanine ligase; InterPro IPR011127: IPR011095: IPR005905; KEGG: bfr:BF0490 D-alanyl-alanine synthetase A; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase YP_004254428.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; HAMAP: tRNA-specific 2-thiouridylase; InterPro IPR004506; KEGG: phe:Phep_2184 tRNA-specific 2-thiouridylase MnmA; SPTR: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; TIGRFAM: tRNA-specific 2-thiouridylase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_004254429.1 COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; InterPro IPR003358; KEGG: pgn:PGN_0989 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; SPTR: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase YP_004254430.1 InterPro IPR020018; KEGG: aps:CFPG_257 hypothetical protein; SPTR: Lipoprotein; TIGRFAM: Gliding motility-associated lipoprotein, GldH; TIGRFAM: gliding motility-associated lipoprotein GldH YP_004254431.1 COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: fjo:Fjoh_1218 peptidase U61, LD-carboxypeptidase A; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Peptidase U61, LD-carboxypeptidase A; PFAM: LD-carboxypeptidase YP_004254432.1 COGs: COG0143 Methionyl-tRNA synthetase; HAMAP: Methionyl-tRNA synthetase; InterPro IPR015413: IPR002547: IPR002304: IPR004495; KEGG: bfr:BF4503 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; PRIAM: Methionine--tRNA ligase; SPTR: Methionyl-tRNA synthetase; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; PFAM: tRNA synthetases class I (M); Anticodon-binding domain; tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase YP_004254433.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: bfs:BF2044 TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain YP_004254434.1 KEGG: bfr:BF1992 hypothetical protein; SPTR: uncharacterized protein YP_004254435.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843: IPR008334; KEGG: bvu:BVU_2726 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor; PFAM: 5'-Nucleotidase, C-terminal; Metallophosphoesterase; PRIAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; SPTR: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; PFAM: 5'-nucleotidase, C-terminal domain; Calcineurin-like phosphoesterase YP_004254436.1 COGs: COG1972 Nucleoside permease; InterPro IPR002668: IPR011642: IPR011657; KEGG: gfo:GFO_0290 Na+ dependent nucleoside transporter; PFAM: Na dependent nucleoside transporter, C-terminal; Na dependent nucleoside transporter; Nucleoside recognition; SPTR: NupC family protein; PFAM: Na+ dependent nucleoside transporter C-terminus; Na+ dependent nucleoside transporter N-terminus; Nucleoside recognition; TIGRFAM: nucleoside transporter YP_004254437.1 KEGG: pdi:BDI_2000 beta-lactamase induction signal transducer; SPTR: Beta-lactamase induction signal transducer; PFAM: Major Facilitator Superfamily YP_004254438.1 COGs: COG2385 Sporulation protein and related protein; InterPro IPR013693: IPR013486; KEGG: bfs:BF0373 hypothetical protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: uncharacterized protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain YP_004254439.1 KEGG: bfr:BF0433 glycosyltransferase; SPTR: glycosyltransferase YP_004254440.1 COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: pdi:BDI_3945 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase 2; PFAM: Glycosyl transferase 2 YP_004254441.1 COGs: COG2137 conserved hypothetical protein; HAMAP: Regulatory protein recX; InterPro IPR003783; KEGG: pru:PRU_2397 regulatory protein RecX; PFAM: Regulatory protein RecX; SPTR: Regulatory protein RecX; PFAM: RecX family YP_004254442.1 COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR007848: IPR004556: IPR019874; KEGG: phe:Phep_2176 modification methylase, HemK family; PFAM: Methyltransferase small; SPTR: Modification methylase, HemK family; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific YP_004254443.1 COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; HAMAP: Cardiolipin synthase; InterPro IPR001736; KEGG: aoe:Clos_0238 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; SPTR: Phospholipase D/Transphosphatidylase; PFAM: Phospholipase D Active site motif YP_004254444.1 COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterProIPR000713: IPR013221: IPR004101: IPR001608: IPR 011079: IPR000821; KEGG: pdi:BDI_3384 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; PFAM: Alanine racemase, C-terminal; Alanine racemase, N-terminal; Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase., Alanine racemase; SPTR: Alanine racemase; TIGRFAM: Alanine racemase; PFAM: Alanine racemase, C-terminal domain; Mur ligase, catalytic domain; Mur ligase, glutamate ligase domain; Alanine racemase, N-terminal domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; alanine racemase YP_004254445.1 InterPro IPR006652; KEGG: pdi:BDI_2349 hypothetical protein; PFAM: Kelch repeat type 1; SPTR: Kelch repeat protein (3 repeats) YP_004254446.1 KEGG: pgi:PG1454 integrase; SPTR: Integrase YP_004254447.1 KEGG: ajs:Ajs_3980 hypothetical protein; SPTR: uncharacterized protein YP_004254448.1 InterPro IPR000119; KEGG: bfs:BF2786 hypothetical protein; PFAM: Histone-like bacterial DNA-binding protein; SPTR: non-specific DNA binding protein; PFAM: Bacterial DNA-binding protein; TIGRFAM: DNA-binding protein, histone-like YP_004254449.1 KEGG: bfu:BC1G_08673 hypothetical protein; SPTR: uncharacterized protein YP_004254450.1 KEGG: tad:TRIADDRAFT_56835 hypothetical protein; SPTR: uncharacterized protein; PFAM: Pathogenicity locus YP_004254451.1 COGs: COG3607 lactoylglutathione lyase; InterPro IPR004360; KEGG: coc:Coch_0097 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_004254452.1 KEGG: pmz:HMPREF0659_A7039 DNA binding domain protein, excisionase; SPTR: uncharacterized protein YP_004254453.1 KEGG: pmz:HMPREF0659_A7038 hypothetical protein; SPTR: Excisionase DNA binding domain-containing protein YP_004254454.1 COGs: COG5545 P-loop ATPase and inactivated derivatives; InterPro IPR007936; KEGG: pgn:PGN_0922 hypothetical protein; PFAM: Virulence-associated E; SPTR: Virulence-associated protein E; PFAM: Virulence-associated protein E YP_004254455.1 KEGG: pmz:HMPREF0659_A6128 hypothetical protein; SPTR: Mobilizable transposon protein; PFAM: CHC2 zinc finger YP_004254456.1 KEGG: pdi:BDI_0747 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3408) YP_004254457.1 KEGG: rbi:RB2501_04945 hypothetical protein; SPTR: uncharacterized protein YP_004254458.1 InterPro IPR005094; KEGG: fps:FP0489 mobilization protein BmgA; PFAM: Endonuclease relaxase, MobA/VirD2; SPTR: MbpB protein; PFAM: Relaxase/Mobilisation nuclease domain YP_004254459.1 COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: aar:Acear_1835 phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: Glyoxylate reductase; SPTR: Phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004254460.1 COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR006076; KEGG: pdi:BDI_1817 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; PRIAM: Glycerol-3-phosphate dehydrogenase; SPTR: Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase YP_004254461.1 COGs: COG0554 Glycerol kinase; HAMAP: Glycerol kinase; InterPro IPR018484: IPR018485: IPR005999; KEGG: bgf:BC1003_2904 glycerol kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; PRIAM: Glycerol kinase; SPTR: Glycerol kinase; TIGRFAM: Glycerol kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase YP_004254462.1 COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); InterPro IPR000425; KEGG: eat:EAT1b_0886 MIP family channel protein; PFAM: Major intrinsic protein; SPTR: MIP family channel protein; PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins YP_004254463.1 COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034: IPR014036; KEGG: cpi:Cpin_0729 transcriptional regulator, DeoR family; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Transcriptional regulator, DeoR family; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_004254464.1 COGs: COG3022 conserved hypothetical protein; HAMAP: UPF0246 protein yaaA; InterPro IPR005583; KEGG: pmz:HMPREF0659_A6870 hypothetical protein; PFAM: Protein of unknown function DUF328; SPTR: YaaA protein; PFAM: Protein of unknown function (DUF328) YP_004254465.1 COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR006076: IPR007419: IPR017752; KEGG: etr:ETAE_3115 sn-glycerol-3-phosphate dehydrogenase subunit A; PFAM: FAD dependent oxidoreductase; BFD-like [2Fe-2S]-binding domain; PRIAM: Glycerol-3-phosphate dehydrogenase; SPTR: uncharacterized protein; TIGRFAM: Anaerobic glycerol-3-phosphate dehydrogenase, A subunit; PFAM: BFD-like [2Fe-2S] binding domain; FAD dependent oxidoreductase; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit YP_004254466.1 COGs: COG3075 Anaerobic glycerol-3-phosphate dehydrogenase; HAMAP: Anaerobic glycerol-3-phosphate dehydrogenase subunit B; InterPro IPR003953: IPR009158; KEGG: etr:ETAE_3114 anaerobic glycerol-3-phosphate dehydrogenase subunit B; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; PRIAM: Glycerol-3-phosphate dehydrogenase; SPTR: uncharacterized protein; TIGRFAM: Anaerobic glycerol-3-phosphate dehydrogenase, subunit B; PFAM: FAD binding domain; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit YP_004254467.1 COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017: IPR017753; KEGG: spe:Spro_0202 sn-glycerol-3-phosphate dehydrogenase subunit C; PFAM: Cysteine-rich domain; SPTR: uncharacterized protein; TIGRFAM: Anaerobic glycerol-3-phosphate dehydrogenase, C subunit; PFAM: Cysteine-rich domain; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit YP_004254468.1 KEGG: ddi:DDB_G0284593 hypothetical protein; SPTR: Maturase K YP_004254469.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701: IPR005267: IPR000849; KEGG: asa:ASA_2708 sn-glycerol-3-phosphate transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: uncharacterized protein; TIGRFAM: Glycerol-3-phosphate transporter; GlpT transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: glycerol-3-phosphate transporter; phosphoglycerate transporter family protein YP_004254470.1 COGs: COG0560 Phosphoserine phosphatase; KEGG: aba:Acid345_2649 haloacid dehalogenase-like hydrolase; SPTR: uncharacterized protein YP_004254471.1 InterPro IPR010870; KEGG: bfr:BF3271 hypothetical protein; PFAM: Phosphate-selective porin O/P; SPTR: uncharacterized protein; PFAM: Phosphate-selective porin O and P YP_004254472.1 KEGG: dat:HRM2_32380 hypothetical protein; SPTR: uncharacterized protein YP_004254473.1 COGs: COG2271 Sugar phosphate permease; InterPro IPR011701: IPR005267: IPR000849; KEGG: asa:ASA_2708 sn-glycerol-3-phosphate transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: uncharacterized protein; TIGRFAM: Glycerol-3-phosphate transporter; GlpT transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: glycerol-3-phosphate transporter; phosphoglycerate transporter family protein YP_004254474.1 COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; InterPro IPR004129; KEGG: pfl:PFL_4539 glycerophosphoryl diester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; SPTR: uncharacterized protein; PFAM: Glycerophosphoryl diester phosphodiesterase YP_004254475.1 InterPro IPR010870; KEGG: bfs:BF2378 hypothetical protein; PFAM: Phosphate-selective porin O/P; SPTR: uncharacterized protein; PFAM: Phosphate-selective porin O and P YP_004254476.1 KEGG: nwi:Nwi_2394 nucleotidyl transferase; SPTR: RNA-polymerase YP_004254477.1 KEGG: pfh:PFHG_02004 conserved hypothetical protein; SPTR: Rhoptry neck protein 6 YP_004254478.1 COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR003711: IPR011545: IPR001650: IPR005118: IPR 014001: IPR004576; KEGG: pdi:BDI_0616 transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Transcription factor CarD; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: uncharacterized protein; TIGRFAM: Transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd) YP_004254479.1 COGs: COG1521 transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: dfe:Dfer_5203 pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor; SPTR: uncharacterized protein; TIGRFAM: Bordetella pertussis Bvg accessory factor; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III YP_004254480.1 InterPro IPR001440: IPR019734; KEGG: bvu:BVU_2563 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: uncharacterized protein YP_004254481.1 InterPro IPR010664; KEGG: bfs:BF0992 hypothetical protein; PFAM: Lipopolysccharide-assembly, LptC-related; SPTR: uncharacterized protein; PFAM: Treponema clustered lipoprotein (Trep_dent_lipo); Protein of unknown function (DUF1239) YP_004254482.1 COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550: IPR000644: IPR005170; KEGG: pdi:BDI_0183 hemolysin; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SPTR: uncharacterized protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain YP_004254483.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004254484.1 COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835; KEGG: aps:CFPG_333 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: Mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_004254485.1 COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: bth:BT_3838 hypothetical protein; PFAM: Protein of unknown function DUF140; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein YP_004254486.1 COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439: IPR003593; KEGG: pdi:BDI_2402 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter YP_004254487.1 KEGG: chu:CHU_2652 hypothetical protein; SPTR: uncharacterized protein YP_004254488.1 KEGG: xca:xccb100_2785 2-oxoglutarate dehydrogenase E1 component; SPTR: uncharacterized protein YP_004254489.1 COGs: COG1983 stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: cat:CA2559_09558 hypothetical protein; PFAM: PspC; SPTR: uncharacterized protein; PFAM: PspC domain YP_004254490.1 COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: zpr:ZPR_2403 PadR-like family transcriptional regulator protein; PFAM: Transcription regulator PadR N-terminal-like; SPTR: PadR-like family transcriptional regulator protein; PFAM: Transcriptional regulator PadR-like family YP_004254491.1 COGs: COG0696 Phosphoglyceromutase; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; InterPro IPR011258: IPR006124: IPR005995; KEGG: bth:BT_3419 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; PRIAM: Phosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_004254492.1 KEGG: pgn:PGN_0688 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3109) YP_004254493.1 COGs: COG1669 nucleotidyltransferase; InterPro IPR002934; KEGG: bth:BT_0168 hypothetical protein; PFAM: Nucleotidyltransferase; SPTR: Nucleotidyltransferase; PFAM: Nucleotidyltransferase domain YP_004254494.1 COGs: COG2361 conserved hypothetical protein; InterPro IPR008201; KEGG: bth:BT_0167 hypothetical protein; PFAM: Protein of unknown function DUF86; SPTR: toxin-antitoxin system, antitoxin component; PFAM: Protein of unknown function DUF86 YP_004254495.1 COGs: COG1669 nucleotidyltransferase; InterPro IPR002934; KEGG: pdi:BDI_2983 nucleotidyltransferase; PFAM: Nucleotidyltransferase; SPTR: uncharacterized protein; PFAM: Nucleotidyltransferase domain YP_004254496.1 COGs: COG2818 3-methyladenine DNA glycosylase; InterPro IPR005019: IPR004597; KEGG: bvu:BVU_0852 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase; PRIAM: DNA-3-methyladenine glycosylase I; SPTR: DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I YP_004254498.1 COGs: COG0701 permease; InterPro IPR005524; KEGG: dno:DNO_0412 hypothetical protein; PFAM: Protein of unknown function DUF318, transmembrane; SPTR: Predicted permeases; PFAM: Predicted permease YP_004254499.1 KEGG: dba:Dbac_1908 thioredoxin domain protein; SPTR: uncharacterized protein; PFAM: Thioredoxin YP_004254500.1 InterPro IPR003834; KEGG: bvu:BVU_4184 cytochrome c biogenesis protein; PFAM: Cytochrome c assembly protein, transmembrane domain; SPTR: uncharacterized protein; PFAM: Cytochrome C biogenesis protein transmembrane region YP_004254501.1 KEGG: bvu:BVU_4183 hypothetical protein; SPTR: uncharacterized protein YP_004254502.1 InterPro IPR005243; KEGG: bth:BT_0120 hypothetical protein; SPTR: Redox-active disulfide protein 2-like protein; TIGRFAM: Redox-active disulphide protein 2; TIGRFAM: small redox-active disulfide protein 2 YP_004254503.1 InterPro IPR001845; KEGG: bvu:BVU_4181 transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family YP_004254504.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bth:BT_0221 hypothetical protein; SPTR: ATPase YP_004254505.1 COGs: COG2217 Cation transport ATPase; InterProIPR006121: IPR008250: IPR005834: IPR006122: IPR 006403: IPR006416: IPR001757; KEGG: bfs:BF3863 copper transport-related membrane protein; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: uncharacterized protein; TIGRFAM: ATPase, P type, cation/copper-transporter; Copper ion-binding; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004254506.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: cat:CA2559_00255 regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004254507.1 KEGG: bth:BT_1889 hypothetical protein; SPTR: uncharacterized protein YP_004254508.1 KEGG: dra:DR_B0059 transposase, SPTR: uncharacterized protein; PFAM: Transposase DDE domain YP_004254509.1 KEGG: pdi:BDI_2534 hypothetical protein; SPTR: uncharacterized protein YP_004254510.1 KEGG: pdi:BDI_1888 DNA repair ATPase; SPTR: uncharacterized protein; PFAM: BRO family, N-terminal domain YP_004254511.1 InterPro IPR000415; KEGG: pdi:BDI_3667 hypothetical protein; PFAM: Nitroreductase-like; SPTR: uncharacterized protein; PFAM: Nitroreductase YP_004254512.1 COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843: IPR008334; KEGG: bcl:ABC1445 5'-nucleotidase; PFAM: Metallophosphoesterase; 5'-Nucleotidase, C-terminal; SPTR: uncharacterized protein; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain YP_004254513.1 COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; InterPro IPR006153: IPR006037; KEGG: bfs:BF2202 potassium/proton antiporter; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; SPTR: uncharacterized protein; PFAM: Sodium/hydrogen exchanger family YP_004254514.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_6682 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004254515.1 InterPro IPR012944; KEGG: cpi:Cpin_6683 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: outer membrane protein; PFAM: SusD family YP_004254516.1 KEGG: cpi:Cpin_6684 hypothetical protein; SPTR: uncharacterized protein YP_004254517.1 KEGG: cpi:Cpin_6685 hypothetical protein; SPTR: uncharacterized protein YP_004254518.1 KEGG: fjo:Fjoh_4555 glycoside hydrolase; SPTR: Candidate modular chitinase with two GH18 catalytic domains; Glycoside hydrolase 18 YP_004254519.1 KEGG: zpr:ZPR_1683 hypothetical protein; SPTR: uncharacterized protein YP_004254520.1 KEGG: sus:Acid_6577 hypothetical protein; SPTR: uncharacterized protein YP_004254521.1 KEGG: scl:sce5364 hypothetical protein; SPTR: uncharacterized protein YP_004254522.1 COGs: COG3534 Alpha-L-arabinofuranosidase; InterPro IPR010720; KEGG: zpr:ZPR_1376 alpha-L-arabinofuranosidase; PFAM: Alpha-L-arabinofuranosidase, C-terminal; SMART: Alpha-L-arabinofuranosidase, C-terminal; SPTR: Alpha-L-arabinofuranosidase; PFAM: Alpha-L-arabinofuranosidase C-terminus YP_004254523.1 COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: gfo:GFO_0692 hypothetical protein; PFAM: Protein of unknown function DUF1680; SPTR: uncharacterized protein; PFAM: glycosyl hydrolase of unknown function (DUF1680) YP_004254524.1 KEGG: rbi:RB2501_05130 hypothetical protein; SPTR: uncharacterized protein YP_004254525.1 COGs: COG0541 Signal recognition particle GTPase; InterProIPR013822: IPR000897: IPR004125: IPR003593: IPR 004780; KEGG: bfs:BF3056 signal recognition particle protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: ATPase, AAA+ type, core; SPTR: uncharacterized protein; TIGRFAM: Signal recognition particle, SRP; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein YP_004254526.1 COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR020630: IPR020631: IPR000672; KEGG: pdi:BDI_0219 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methenyltetrahydrofolate cyclohydrolase; SPTR: Bifunctional protein folD; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004254527.1 COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis.; InterPro IPR011642; KEGG: bvu:BVU_1218 hypothetical protein; PFAM: Nucleoside recognition; SPTR: uncharacterized protein; PFAM: Nucleoside recognition YP_004254528.1 COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; HAMAP: tRNA-specific 2-thiouridylase; InterPro IPR004506; KEGG: bvu:BVU_0999 tRNA-specific 2-thiouridylase MnmA; SPTR: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; TIGRFAM: tRNA-specific 2-thiouridylase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_004254529.1 COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: bvu:BVU_0223 MarC family integral membrane protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: amino acid transporter; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family YP_004254530.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: phe:Phep_0443 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254531.1 COGs: COG0730 permease; InterPro IPR002781; KEGG: taf:THA_20 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Membrane protein, ; PFAM: Sulfite exporter TauE/SafE YP_004254532.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bvu:BVU_2219 anti-sigma factor; PFAM: FecR protein; SPTR: anti-sigma factor; PFAM: FecR protein YP_004254533.1 InterPro IPR012910: IPR000531; KEGG: cpi:Cpin_6155 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004254534.1 KEGG: fjo:Fjoh_3801 RagB/SusD domain-containing protein; SPTR: uncharacterized protein YP_004254535.1 InterPro IPR013740; KEGG: cpi:Cpin_2082 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: Redoxin YP_004254536.1 KEGG: gvi:glr3963 thiol-disulfide interchange protein DsbD-like protein; SPTR: uncharacterized protein YP_004254537.1 KEGG: cdl:CDR20291_2845 pyridine-nucleotide-disulfide oxidoreductase; SPTR: pyridine-nucleotide-disulfide oxidoreductase YP_004254538.1 InterPro IPR013740; KEGG: cpi:Cpin_2111 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: Redoxin YP_004254539.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR007627: IPR013249: IPR000792: IPR014284: IPR 014327; KEGG: phe:Phep_0253 RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254540.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: fjo:Fjoh_3803 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR; PFAM: FecR protein YP_004254541.1 InterPro IPR013766; KEGG: bth:BT_3069 disulphide-isomerase; PFAM: Thioredoxin domain; SPTR: disulphide-isomerase; PFAM: Protein of unknown function, DUF255 YP_004254542.1 InterPro IPR012910: IPR000531; KEGG: bth:BT_3271 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004254543.1 KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004254544.1 KEGG: cpi:Cpin_1099 hypothetical protein; SPTR: uncharacterized protein YP_004254545.1 KEGG: cpi:Cpin_1100 hypothetical protein; SPTR: uncharacterized protein YP_004254546.1 COGs: COG1225 Peroxiredoxin; InterPro IPR013766: IPR000866: IPR013740; KEGG: cpi:Cpin_3292 redoxin domain protein; PFAM: Redoxin; Thioredoxin domain; Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: Thioredoxin; AhpC/TSA family YP_004254547.1 COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171: IPR004620; KEGG: chu:CHU_1435 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); SPTR: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form YP_004254548.1 COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterProIPR003726: IPR000489: IPR003759: IPR006158: IPR 004223: IPR011822; KEGG: cpb:Cphamn1_2093 B12-dependent methionine synthase; PFAM: Homocysteine S-methyltransferase; Dihydropteroate synthase, DHPS; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12-dependent methionine synthase, activation domain; PRIAM: Methionine synthase; SPTR: Methionine synthase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; methylmalonyl-CoA mutase C-terminal domain YP_004254549.1 COGs: COG2122 conserved hypothetical protein; InterPro IPR003374; KEGG: pth:PTH_1474 hypothetical protein; PFAM: ApbE-like lipoprotein; SPTR: Uncharacterized conserved protein; PFAM: ApbE family YP_004254550.1 InterPro IPR018449; KEGG: tjr:TherJR_1174 NIL domain protein; PFAM: NIL domain; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; PFAM: NIL domain YP_004254551.1 COGs: COG1900 conserved hypothetical protein; InterPro IPR002708; KEGG: tle:Tlet_1363 hypothetical protein; PFAM: Protein of unknown function DUF39; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF39 YP_004254553.1 KEGG: chu:CHU_1544 hypothetical protein; SPTR: uncharacterized protein YP_004254554.1 COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: bvu:BVU_3064 tRNA/rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase; PFAM: SpoU rRNA Methylase YP_004254555.1 COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: bfs:BF2374 surface membrane protein; PFAM: Bacterial surface antigen (D15); SPTR: uncharacterized protein; PFAM: Surface antigen YP_004254556.1 COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712: IPR003594; KEGG: dfe:Dfer_2962 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SPTR: Signal transduction histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004254557.1 COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: cpi:Cpin_2907 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_004254558.1 COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR005835; KEGG: cts:Ctha_0879 nucleotidyl transferase; PFAM: Nucleotidyl transferase; SPTR: uncharacterized protein; PFAM: Nucleotidyl transferase YP_004254559.1 InterPro IPR007452; KEGG: pdi:BDI_2669 hypothetical protein; PFAM: Protein of unknown function DUF490; SPTR: Uncharacterized protein conserved in bacteria YP_004254560.1 COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: pdi:BDI_2670 hypothetical protein; PFAM: Bacterial surface antigen (D15); SPTR: Outer membrane protein/protective antigen OMA87; PFAM: Surface antigen variable number repeat; Surface antigen YP_004254561.1 KEGG: bth:BT_4333 hypothetical protein; SPTR: uncharacterized protein YP_004254562.1 COGs: COG0349 Ribonuclease D; InterPro IPR002562; KEGG: bfs:BF0948 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; SPTR: uncharacterized protein; PFAM: 3'-5' exonuclease YP_004254563.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR001789: IPR003661: IPR003594; KEGG: bth:BT_1058 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain YP_004254564.1 InterPro IPR003018; KEGG: wsu:WS0975 hybrid histidine kinase; SMART: GAF; SPTR: Multi-sensor Hybrid Histidine Kinase YP_004254565.1 KEGG: olu:OSTLU_31795 predicted protein YP_004254566.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: fsu:Fisuc_1710 conserved hypothetical ATPase; SPTR: ATP-binding protein YP_004254567.1 InterPro IPR004256; KEGG: bfs:BF1799 ATP/GTP-binding protein; PFAM: Protein of unknown function DUF234, DEXX-box ATPase C-terminal; SPTR: ATP/GTP-binding protein; PFAM: Archaeal ATPase; Archaea bacterial proteins of unknown function YP_004254568.1 KEGG: mxa:MXAN_4237 sodium:sulfate symporter; SPTR: RloC protein YP_004254569.1 KEGG: pdi:BDI_2891 hypothetical protein; SPTR: uncharacterized protein YP_004254570.1 InterPro IPR007844; KEGG: bfr:BF0987 outer membrane assembly protein; PFAM: AsmA; SPTR: Outer membrane assembly protein; PFAM: AsmA family YP_004254571.1 KEGG: chu:CHU_3327 hypothetical protein; SPTR: uncharacterized protein YP_004254572.1 COGs: COG2217 Cation transport ATPase; InterProIPR006121: IPR008250: IPR005834: IPR006403: IPR 006416: IPR001757; KEGG: zpr:ZPR_3370 copper transport-related membrane protein; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: copper transport-related membrane protein; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_004254573.1 COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: pdi:BDI_0965 aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; PRIAM: Membrane alanyl aminopeptidase; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF3358); Peptidase M1 YP_004254574.1 COGs: COG2183 Transcriptional accessory protein; InterPro IPR018974: IPR003029: IPR006641; KEGG: pdi:BDI_1372 RNA-binding protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA binding domain; SMART: Resolvase, RNase H-like fold; SPTR: uncharacterized protein; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region YP_004254575.1 KEGG: pdi:BDI_3113 hypothetical protein; SPTR: uncharacterized protein YP_004254576.1 COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439: IPR003593; KEGG: pdi:BDI_1423 excinuclease ABC, subunit A, daunorubicin resistance protein; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, subunit A, daunorubicin resistance protein; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_004254577.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: bvu:BVU_1818 dipeptidyl peptidase IV; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; PRIAM: Dipeptidyl-peptidase IV; SPTR: uncharacterized protein; PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region YP_004254578.1 KEGG: chu:CHU_1462 Tn5520-like integrase (transfer factor); SPTR: uncharacterized protein; manually curated YP_004254579.1 KEGG: brm:Bmur_1934 hypothetical protein; SPTR: uncharacterized protein YP_004254580.1 KEGG: rsl:RPSI07_mp0694 phospholipase D; SPTR: uncharacterized protein YP_004254581.1 KEGG: pop:POPTR_891394 hypothetical protein; SPTR: Predicted protein YP_004254582.1 InterPro IPR000620; KEGG: bvu:BVU_1967 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: uncharacterized protein; PFAM: EamA-like transporter family YP_004254583.1 COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: pgn:PGN_0328 hypothetical protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: uncharacterized protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family YP_004254584.1 COGs: COG1238 membrane protein; KEGG: kko:Kkor_1236 SNARE associated Golgi protein; SPTR: Membrane protein; PFAM: SNARE associated Golgi protein YP_004254585.1 COGs: COG1238 membrane protein; KEGG: pdi:BDI_3097 integral membrane protein; SPTR: uncharacterized protein; PFAM: SNARE associated Golgi protein YP_004254586.1 COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR002078: IPR002197: IPR003593; KEGG: pdi:BDI_0114 two-component system response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain YP_004254587.1 KEGG: tva:TVAG_122020 Calreticulin family protein; SPTR: uncharacterized protein YP_004254588.1 KEGG: bth:BT_3274 hypothetical protein; SPTR: uncharacterized protein YP_004254589.1 InterPro IPR000866; KEGG: bvu:BVU_3557 thiol:disulfide interchange protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: Redoxin YP_004254590.1 InterPro IPR013740; KEGG: bvu:BVU_2222 thiol-disulfide oxidoreductase; PFAM: Redoxin; SPTR: thiol-disulfide oxidoreductase; PFAM: Redoxin YP_004254591.1 COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839: IPR011282; KEGG: pdi:BDI_1237 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: uncharacterized protein; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase YP_004254592.1 KEGG: bth:BT_1839 hypothetical protein; SPTR: uncharacterized protein YP_004254593.1 COGs: COG2801 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: bca:BCE_A0056 IS3 family transposase OrfB; PFAM: Integrase, catalytic core; SPTR: Integrase catalytic region; PFAM: Integrase core domain YP_004254594.1 InterPro IPR002514; KEGG: smb:smi_1364 transposase orfA, ISSmu1; PFAM: Transposase IS3/IS911; SPTR: uncharacterized protein; PFAM: Transposase YP_004254595.1 KEGG: bvu:BVU_0051 hypothetical protein; SPTR: RNA polymerase ECF-type sigma factor YP_004254596.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: bvu:BVU_0052 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004254597.1 InterPro IPR003343; KEGG: pmz:HMPREF0659_A6285 lipoprotein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2; SPTR: uncharacterized protein; PFAM: Bacterial Ig-like domain (group 2) YP_004254598.1 KEGG: bvu:BVU_3832 hypothetical protein; SPTR: uncharacterized protein YP_004254599.1 COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bth:BT_0221 hypothetical protein; SPTR: ATPase YP_004254600.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR000792: IPR007627: IPR013249: IPR014284: IPR 014327; KEGG: bvu:BVU_0367 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254601.1 COGs: COG1985 Pyrimidine reductase riboflavin biosynthesis; InterPro IPR002125: IPR002734: IPR004794: IPR011549; KEGG: amt:Amet_1018 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: Diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase; TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; manually curated; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD YP_004254602.1 COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: eel:EUBELI_20113 riboflavin synthase alpha chain; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase subunit alpha; TIGRFAM: Lumazine-binding protein; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit YP_004254603.1 COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: DHBP synthase RibB; GTP cyclohydrolase II; InterPro IPR000422: IPR000926; KEGG: ccb:Clocel_2844 GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II; DHBP synthase RibB; SPTR: uncharacterized protein; TIGRFAM: GTP cyclohydrolase II; DHBP synthase RibB; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_004254604.1 COGs: COG0054 Riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: dhd:Dhaf_2811 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004254605.1 COGs: COG2077 Peroxiredoxin; InterPro IPR013740; KEGG: vpr:Vpar_0892 redoxin domain protein; PFAM: Redoxin; SPTR: Thiol peroxidase (Atypical 2-Cys peroxiredoxin); PFAM: Redoxin YP_004254606.1 COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: Membrane protein oxaA; InterPro IPR001708: IPR019998: IPR020001; KEGG: pdi:BDI_0520 inner membrane protein translocase component YidC; PFAM: Membrane insertion protein, OxaA/YidC; SPTR: Inner membrane protein OxaA; TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain YP_004254607.1 COGs: COG0504 CTP synthase (UTP-ammonia lyase); HAMAP: CTP synthase; InterPro IPR017456: IPR000991: IPR004468; KEGG: coc:Coch_0157 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase YP_004254608.1 KEGG: bll:BLJ_1648 IS3509a transposase; SPTR: Transposase for IS3509a YP_004254609.1 InterPro IPR007139; KEGG: bth:BT_4041 hypothetical protein; PFAM: Protein of unknown function DUF349; SPTR: uncharacterized protein; PFAM: Domain of Unknown Function (DUF349) YP_004254610.1 COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: pru:PRU_2910 lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase YP_004254611.1 COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: bth:BT_2151 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, group 2 family; PFAM: Glycosyl transferase 2 YP_004254612.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR014284; KEGG: phe:Phep_0872 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004254613.1 KEGG: pdi:BDI_3790 hypothetical protein; SPTR: uncharacterized protein YP_004254614.1 KEGG: gfo:GFO_1054 hypothetical protein; SPTR: uncharacterized protein YP_004254615.1 KEGG: dgr:Dgri_GH24214 GH24214 gene product from transcript GH24214-RA; SPTR: uncharacterized protein YP_004254616.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: bvu:BVU_0015 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: DNA-binding response regulator RprY; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004254617.1 KEGG: nve:NEMVE_v1g84004 hypothetical protein; SPTR: Predicted protein YP_004254618.1 KEGG: dfe:Dfer_2601 transcriptional regulator, LacI family; SPTR: uncharacterized protein YP_004254619.1 KEGG: pdi:BDI_3423 hypothetical protein; SPTR: uncharacterized protein YP_004254620.1 KEGG: bfs:BF0045 lipoprotein; SPTR: uncharacterized protein YP_004254621.1 KEGG: hmg:100202794 similar to pol-like protein; SPTR: uncharacterized protein YP_004254622.1 COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: Dihydrodipicolinate synthase; InterPro IPR002220: IPR005263; KEGG: pru:PRU_1224 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase; PRIAM: Dihydrodipicolinate synthase; SPTR: Dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily; PFAM: Dihydrodipicolinate synthetase; TIGRFAM: dihydrodipicolinate synthase YP_004254623.1 InterPro IPR019196; KEGG: sru:SRU_1249 hypothetical protein; PFAM: ABC-type uncharacterised transport system; SPTR: uncharacterized protein; PFAM: ABC-type uncharacterized transport system YP_004254624.1 KEGG: srm:SRM_01439 probable permease of ABC transporter; SPTR: Gliding motility protein GldF YP_004254625.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: srm:SRM_01440 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Gliding motility protein; PFAM: ABC transporter; TIGRFAM: gliding motility-associated ABC transporter ATP-binding subunit GldA YP_004254626.1 KEGG: pdi:BDI_3446 hypothetical protein; SPTR: uncharacterized protein YP_004254627.1 KEGG: pdi:BDI_3446 hypothetical protein; SPTR: uncharacterized protein YP_004254628.1 KEGG: bfr:BF0463 hypothetical protein; SPTR: uncharacterized protein; PFAM: AhpC/TSA family YP_004254629.1 KEGG: pyo:PY00685 TATA element modulatory factor; SPTR: uncharacterized protein YP_004254630.1 KEGG: bfs:BF2997 lipoprotein; SPTR: lipoprotein YP_004254631.1 KEGG: fps:FP0653 D-alanyl-alanine synthetase A; SPTR: uncharacterized protein YP_004254632.1 InterPro IPR011467; KEGG: bvu:BVU_1933 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1573) YP_004254633.1 KEGG: bfs:BF0405 hypothetical protein; SPTR: uncharacterized protein YP_004254634.1 KEGG: tet:TTHERM_00457020 Leucine Rich Repeat family protein; SPTR: uncharacterized protein YP_004254635.1 COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: cpi:Cpin_0694 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_004254636.1 COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: bvu:BVU_1313 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_004254637.1 COGs: COG1609 Transcriptional regulators; InterPro IPR000843: IPR001761; KEGG: phe:Phep_0779 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Periplasmic binding protein/LacI transcriptional regulator; PFAM: Bacterial regulatory proteins, lacI family; family YP_004254638.1 COGs: COG1480 membrane-associated HD superfamily hydrolase; InterPro IPR003607: IPR011621: IPR006674: IPR006675; KEGG: pdi:BDI_2290 membrane-associated HD superfamily hydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; Metal-dependent phosphohydrolase, 7TM intracellular domain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: uncharacterized protein; TIGRFAM: HDIG; PFAM: 7TM-HD extracellular; HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG YP_004254639.1 COGs: COG0331 ACP S-malonyltransferase; InterPro IPR014043: IPR004410; KEGG: bth:BT_0789 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; PRIAM: ACP S-malonyltransferase; SPTR: Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_004254640.1 COGs: COG0302 GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; InterPro IPR020602: IPR001474; KEGG: phe:Phep_4149 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase 1; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I YP_004254641.1 KEGG: rba:RB2132 signal peptide; SPTR: uncharacterized protein YP_004254642.1 KEGG: phe:Phep_2847 hypothetical protein; SPTR: uncharacterized protein YP_004254643.1 InterPro IPR001387; KEGG: bfr:BFp0025 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: uncharacterized protein; PFAM: Helix-turn-helix YP_004254644.1 InterPro IPR009241; KEGG: bfr:BFp0024 hypothetical protein; PFAM: Protein of unknown function DUF891; SPTR: Toxin-antitoxin system, toxin component, RelE family; PFAM: Phage derived protein Gp49-like (DUF891) YP_004254645.1 COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: bfs:BF4052 transposase; PFAM: Transposase, IS4-like; SPTR: ISNCY family transposase; PFAM: Transposase DDE domain; Transposase domain (DUF772) YP_004254646.1 KEGG: pmz:HMPREF0659_A6109 hypothetical protein; SPTR: uncharacterized protein YP_004254647.1 KEGG: mac:MA4289 cell surface protein; SPTR: BNR/Asp-box repeat protein YP_004254648.1 KEGG: bth:BT_4606 hypothetical protein; SPTR: BNR/Asp-box repeat protein YP_004254649.1 KEGG: aps:CFPG_387 hypothetical protein; SPTR: uncharacterized protein; PFAM: NfeD-like YP_004254650.1 COGs: COG4864 conserved hypothetical protein; HAMAP: UPF0365 protein; KEGG: bth:BT_4555 hypothetical protein; SPTR: UPF0365 protein ALIPUT_00407; PFAM: SigmaW regulon antibacterial YP_004254651.1 COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183: IPR002986; KEGG: pdi:BDI_2022 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: Diaminopimelate decarboxylase; SPTR: Diaminopimelate decarboxylase; TIGRFAM: Diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase YP_004254652.1 COGs: COG0527 Aspartokinase; InterPro IPR001048: IPR001341; KEGG: bth:BT_1375 aspartokinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Aspartate kinase; SPTR: Aspartokinase; TIGRFAM: Aspartate kinase domain; PFAM: Amino acid kinase; TIGRFAM: aspartate kinase YP_004254653.1 COGs: COG2264 Ribosomal protein L11 methylase; HAMAP: Ribosomal protein L11 methyltransferase; InterPro IPR010456: IPR004498; KEGG: bfs:BF1638 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase YP_004254654.1 COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: bvu:BVU_1954 tRNA and rRNA cytosine-C5-methylase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR: uncharacterized protein; PFAM: NOL1/NOP2/sun family YP_004254655.1 COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro IPR006094: IPR011601: IPR003170; KEGG: bvu:BVU_2239 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_004254656.1 COGs: COG3884 Acyl-ACP thioesterase; InterPro IPR002864; KEGG: aoe:Clos_0894 acyl-ACP thioesterase; PFAM: Acyl-ACP thioesterase; SPTR: Acyl-ACP thioesterase; PFAM: Acyl-ACP thioesterase YP_004254657.1 KEGG: cpi:Cpin_7301 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3127) YP_004254658.1 COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774: IPR001179; KEGG: nwa:Nwat_1105 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; PRIAM: Peptidylprolyl isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YP_004254659.1 COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774: IPR001179; KEGG: pdi:BDI_2706 peptidyl-prolyl cis-trans isomerase, FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YP_004254660.1 COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: pmz:HMPREF0659_A6163 lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter YP_004254661.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060: IPR000005; KEGG: bvu:BVU_2093 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004254662.1 InterPro IPR000866; KEGG: fjo:Fjoh_2010 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family YP_004254663.1 InterPro IPR012910; KEGG: cpi:Cpin_5147 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain YP_004254664.1 InterPro IPR012944; KEGG: cpi:Cpin_1098 hypothetical protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004254665.1 KEGG: bth:BT_3273 hypothetical protein; SPTR: uncharacterized protein YP_004254666.1 KEGG: bth:BT_3274 hypothetical protein; SPTR: uncharacterized protein YP_004254667.1 COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR008881: IPR005215; KEGG: pdi:BDI_2397 FKBP-type peptidyl-prolyl cis-transisomerase; PFAM: Trigger factor, ribosome-binding, bacterial; SPTR: Trigger factor; TIGRFAM: Trigger factor; PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor YP_004254668.1 COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: bth:BT_3308 zinc protease YmxG; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; PRIAM: processing peptidase; SPTR: uncharacterized protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16) YP_004254669.1 COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: pdi:BDI_3303 O-methyltransferase; PFAM: O-methyltransferase, family 3; PRIAM: Caffeoyl-CoA O-methyltransferase; SPTR: O-methyltransferase; PFAM: O-methyltransferase YP_004254670.1 COGs: COG0207 Thymidylate synthase; HAMAP: Thymidylate synthase; InterPro IPR000398; KEGG: bfs:BF3523 thymidylate synthase; PFAM: Thymidylate synthase; PRIAM: Thymidylate synthase; SPTR: Thymidylate synthase; TIGRFAM: Thymidylate synthase; PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase YP_004254671.1 COGs: COG3083 hydrolase of alkaline phosphatase superfamily; InterPro IPR000917; KEGG: vvu:VV1_1794 hydrolase of alkaline phosphatase superfamily; PFAM: Sulfatase; SPTR: uncharacterized protein; PFAM: Sulfatase; Domain of unknown function (DUF3413) YP_004254672.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pdi:BDI_2816 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Group 1 family glycosyl transferase; PFAM: Glycosyl transferases group 1 YP_004254673.1 COGs: COG0262 Dihydrofolate reductase; InterPro IPR001796; KEGG: phe:Phep_1421 dihydrofolate reductase; PFAM: Dihydrofolate reductase domain; PRIAM: Dihydrofolate reductase; SPTR: Dihydrofolate reductase; PFAM: Dihydrofolate reductase YP_004254674.1 KEGG: bth:BT_3364 hypothetical protein; SPTR: uncharacterized protein; PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family YP_004254675.1 InterPro IPR001173; KEGG: pmz:HMPREF0659_A6390 glycosyltransferase, group 2 family protein; PFAM: Glycosyl transferase, family 2; SPTR: Beta 1,4 glucosyltransferase; PFAM: Glycosyl transferase 2 YP_004254676.1 COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pdi:BDI_2816 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1 family; PFAM: Glycosyl transferases group 1 YP_004254677.1 KEGG: pdi:BDI_2818 hypothetical protein; SPTR: uncharacterized protein; PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family YP_004254678.1 COGs: COG1887 glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; InterPro IPR007554; KEGG: fbc:FB2170_00855 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; PFAM: CDP-glycerol glycerophosphotransferase; SPTR: CDP-Glycerol:Poly(Glycerophosphate) glycerophosphotransferase; PFAM: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase YP_004254679.1 COGs: COG1213 sugar nucleotidyltransferase; InterPro IPR005835; KEGG: pru:PRU_2907 nucleotidyltransferase; PFAM: Nucleotidyl transferase; SPTR: uncharacterized protein; PFAM: Nucleotidyl transferase YP_004254680.1 COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: pru:PRU_2906 class I/II aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase); PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase YP_004254681.1 KEGG: meh:M301_2021 O-antigen polymerase; SPTR: O-antigen ligase; PFAM: O-Antigen ligase YP_004254682.1 COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: wsu:WS1450 ADP-heptose-LPS heptosyltransferase II RfaF; PFAM: Glycosyl transferase, family 9; SPTR: ADP-HEPTOSE-LPS HEPTOSYLTRANSFERASE II (RFAF) ,; PFAM: Glycosyltransferase 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II YP_004254683.1 KEGG: gfo:GFO_1981 hypothetical protein; SPTR: uncharacterized protein YP_004254684.1 COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; InterPro IPR001228; KEGG: pdi:BDI_1841 pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PRIAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; SPTR: Pyrophosphorylase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004254685.1 COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pdi:BDI_0026 nucleoside-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: Nucleoside-diphosphate-sugar epimerase; PFAM: NAD dependent epimerase/dehydratase YP_004254686.1 COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR001732: IPR014026: IPR014027: IPR017476; KEGG: fjo:Fjoh_0356 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; SPTR: UDP-N-acetyl-D-galactosamine dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_004254687.1 COGs: COG3537 alpha-1 2-mannosidase; InterPro IPR012939: IPR005887; KEGG: fjo:Fjoh_2032 alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase 92; SPTR: Glycoside hydrolase 92; TIGRFAM: Alpha-1,2-mannosidase, PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase YP_004254688.1 COGs: COG4123 O-methyltransferase; HAMAP: tRNA (adenine-N(6)-)-methyltransferase; InterPro IPR013217; KEGG: pdi:BDI_1875 hypothetical protein; PFAM: Methyltransferase type 12; SPTR: uncharacterized protein; PFAM: Methyltransferase small domain YP_004254689.1 KEGG: pdi:BDI_1862 hypothetical protein; SPTR: uncharacterized protein YP_004254690.1 COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623; KEGG: bvu:BVU_0073 DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: uncharacterized protein; PFAM: DnaJ domain; Tellurite resistance protein TerB YP_004254691.1 COGs: COG0237 Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; InterPro IPR001977; KEGG: pdi:BDI_1861 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; Domain of unknown function DUF1829; TIGRFAM: dephospho-CoA kinase YP_004254692.1 KEGG: bvu:BVU_3819 hypothetical protein; SPTR: uncharacterized protein YP_004254693.1 COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: phe:Phep_1403 preprotein translocase, YajC subunit; PFAM: YajC; SPTR: Preprotein translocase, YajC subunit; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit YP_004254694.1 InterPro IPR011467; KEGG: sli:Slin_6328 protein of unknown function DUF1573; PFAM: Protein of unknown function DUF1573; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1573) YP_004254695.1 COGs: COG0775 Nucleoside phosphorylase; InterPro IPR000845: IPR010944; KEGG: pgn:PGN_1002 AMP nucleosidase; PFAM: Nucleoside phosphorylase; SPTR: AMP nucleosidase, ; TIGRFAM: AMP nucleosidase, PFAM: Phosphorylase superfamily; TIGRFAM: AMP nucleosidase YP_004254696.1 COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: Queuosine biosynthesis protein; InterPro IPR003699; KEGG: pru:PRU_0763 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: uncharacterized protein; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_004254697.1 InterPro IPR007409; KEGG: coc:Coch_0461 protein of unknown function DUF450; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SPTR: Type I restriction enzyme R protein YP_004254698.1 KEGG: ppr:PBPRB0904 sensor histidine kinase; SPTR: Hypothetical sensor histidine kinase YP_004254699.1 KEGG: pbe:PB000608.00.0 hypothetical protein; SPTR: Predicted protein YP_004254700.1 InterPro IPR019734; KEGG: pdi:BDI_2343 hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: uncharacterized protein YP_004254701.1 COGs: COG1703 periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR003593: IPR005129; KEGG: pdi:BDI_3744 arginine/ornithine transport system ATPase; PFAM: ArgK protein; SMART: ATPase, AAA+ type, core; SPTR: LAO/AO transport system ATPase; TIGRFAM: ArgK protein; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase YP_004254702.1 KEGG: dal:Dalk_4509 hypothetical protein; SPTR: Transposase YP_004254703.1 InterPro IPR002559; KEGG: ccb:Clocel_3379 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase; PFAM: Transposase DDE domain YP_004254704.1 KEGG: lac:LBA0622 flavodoxin; SPTR: Predicted protein YP_004254705.1 KEGG: slt:Slit_0202 hypothetical protein; SPTR: uncharacterized protein YP_004254706.1 KEGG: bth:BT_1014 hypothetical protein; SPTR: uncharacterized protein YP_004254707.1 KEGG: bth:BT_1014 hypothetical protein; SPTR: uncharacterized protein YP_004254708.1 KEGG: bfr:BF3846 hypothetical protein; SPTR: uncharacterized protein YP_004254709.1 KEGG: bvu:BVU_1036 hypothetical protein; SPTR: Predicted protein YP_004254710.1 KEGG: pru:PRU_0518 lipoprotein; SPTR: Predicted protein YP_004254711.1 COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005: IPR018060; KEGG: bfs:BF1387 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC family transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_004254712.1 KEGG: dra:DR_B0059 transposase, SPTR: uncharacterized protein; manually curated YP_004254713.1 COGs: COG5206 Glycosylphosphatidylinositol transamidase (GPIT) subunit GPI8; InterPro IPR001096: IPR001828; KEGG: pru:PRU_1476 C13 family peptidase; PFAM: Peptidase C13, legumain; Extracellular ligand-binding receptor; PRIAM: Legumain; SPTR: Legumain; PFAM: Receptor family ligand binding region; Peptidase C13 family YP_004254714.1 COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR003760; KEGG: pru:PRU_0514 hypothetical protein; PFAM: Basic membrane lipoprotein; SPTR: Predicted protein; PFAM: Basic membrane protein YP_004254715.1 KEGG: cqu:CpipJ_CPIJ013829 hypothetical protein; SPTR: Predicted protein YP_004254716.1 InterPro IPR002559; KEGG: ccb:Clocel_3379 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase; PFAM: Transposase DDE domain YP_004254717.1 KEGG: bvu:BVU_1857 hypothetical protein; SPTR: uncharacterized protein YP_004254718.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR000792: IPR007627: IPR013249: IPR014284: IPR 014327; KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254719.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: cpi:Cpin_5148 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004254720.1 COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593: IPR003439; KEGG: cpi:Cpin_3051 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding family protein; PFAM: ABC transporter YP_004254721.1 COGs: COG1277 ABC-type transport system involved in multi-copper enzyme maturation permease component; InterPro IPR019196; KEGG: cpi:Cpin_3052 ABC-type transport system involved in multi-copper enzyme maturation permease component; PFAM: ABC-type uncharacterised transport system; SPTR: ABC-type transport system involved in multi-copper enzyme maturation permease component; PFAM: ABC-type uncharacterized transport system YP_004254722.1 COGs: COG1277 ABC-type transport system involved in multi-copper enzyme maturation permease component; InterPro IPR013525: IPR019196; KEGG: cpi:Cpin_3052 ABC-type transport system involved in multi-copper enzyme maturation permease component; PFAM: ABC-type uncharacterised transport system; ABC-2 type transporter; SPTR: ABC-type transport system involved in multi-copper enzyme maturation permease component; PFAM: ABC-type uncharacterized transport system YP_004254723.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662: IPR012910: IPR000531; KEGG: bth:BT_3271 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_004254724.1 KEGG: bth:BT_3272 outer membrane protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004254725.1 KEGG: bth:BT_3273 hypothetical protein; SPTR: uncharacterized protein YP_004254726.1 KEGG: bth:BT_3274 hypothetical protein; SPTR: uncharacterized protein YP_004254727.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR000792: IPR007627: IPR013249: IPR014284; KEGG: sli:Slin_5657 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_004254728.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0955 FecR protein; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004254729.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662: IPR012910: IPR000531; KEGG: bvu:BVU_2220 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_004254730.1 KEGG: bvu:BVU_2221 hypothetical protein; SPTR: lipoprotein; PFAM: SusD family YP_004254731.1 KEGG: bth:BT_3557 transposase; SPTR: transposase; PFAM: Transposase domain (DUF772) YP_004254732.1 InterPro IPR002559; KEGG: ccb:Clocel_3379 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family; PFAM: Transposase DDE domain YP_004254733.1 COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: rbi:RB2501_14609 lipoprotein/thioderoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: lipoprotein/thioderoxin; PFAM: AhpC/TSA family YP_004254734.1 KEGG: cpi:Cpin_3291 hypothetical protein; SPTR: uncharacterized protein YP_004254735.1 KEGG: cpi:Cpin_3290 hypothetical protein; SPTR: uncharacterized protein YP_004254736.1 KEGG: cpi:Cpin_3289 hypothetical protein; SPTR: uncharacterized protein; PFAM: SusD family YP_004254737.1 InterPro IPR012910; KEGG: cpi:Cpin_3288 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: outer membrane protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004254738.1 COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: bth:BT_3270 anti-sigma factor; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein YP_004254739.1 COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR000792: IPR007627: IPR013249: IPR014284: IPR 014327; KEGG: bfs:BF3744 RNA polymerase sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SMART: Transcription regulator LuxR, C-terminal; SPTR: uncharacterized protein; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_004254740.1 COGs: COG5421 Transposase; InterPro IPR002559; KEGG: cph:Cpha266_0325 transposase, IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase, IS4 family; PFAM: Transposase DDE domain YP_004254741.1 InterPro IPR001387; KEGG: bvu:BVU_3433 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: helix-turn-helix protein; PFAM: Helix-turn-helix YP_004254742.1 SPTR: tRNA pseudouridine synthase B YP_004254743.1 KEGG: bvu:BVU_3432 hypothetical protein; SPTR: uncharacterized protein YP_004254744.1 KEGG: bfr:BF2313 hypothetical protein; SPTR: Predicted protein YP_004254745.1 COGs: COG0358 DNA primase; InterPro IPR002694: IPR013264; KEGG: bvu:BVU_3430 DNA primase; SPTR: DNA primase; PFAM: CHC2 zinc finger; DNA primase catalytic core, N-terminal domain; TIGRFAM: DNA primase, catalytic core YP_004254746.1 InterPro IPR000601; KEGG: bfr:BF3032 cell surface protein; PFAM: PKD; SPTR: uncharacterized protein YP_004254747.1 InterPro IPR000494; KEGG: bfr:BF3031 cell wall biogenesis protein; PFAM: EGF receptor, L domain; SPTR: Predicted protein; PFAM: Receptor L domain YP_004254748.1 KEGG: bfr:BF3030 surface layer protein; SPTR: Surface layer protein; PFAM: Glutamine cyclotransferase YP_004254749.1 COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: bfr:BF3029 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004254750.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: bth:BT_1952 Fe3+ ABC transporter, periplasmic iron-binding protein; PFAM: Periplasmic binding protein; SPTR: Fe3+ ABC transporter, periplasmic iron-binding protein; PFAM: Periplasmic binding protein YP_004254751.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: bth:BT_1951 Fe3+ ABC transporter, permease; PFAM: Bacterial transport system permease; SPTR: Fe3+ ABC transporter; PFAM: FecCD transport family YP_004254752.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593: IPR003439; KEGG: bfr:BF3026 iron(III) ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Fe3+ ABC transporter; PFAM: ABC transporter YP_004254753.1 KEGG: bfr:BF3025 hypothetical protein; SPTR: uncharacterized protein; PFAM: Predicted metal-binding protein (DUF2284) YP_004254754.1 COGs: COG1106 ATPase; KEGG: pgn:PGN_2026 abortive infection protein; SPTR: abortive infection protein YP_004254755.1 KEGG: pgi:PG0078 hypothetical protein; SPTR: uncharacterized protein YP_004254756.1 InterPro IPR019271; KEGG: bfr:BF3025 hypothetical protein; PFAM: Protein of unknown function DUF2284, metal-binding; SPTR: uncharacterized protein; PFAM: Predicted metal-binding protein (DUF2284) YP_004254757.1 COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593: IPR003439; KEGG: bfr:BF3026 iron(III) ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Iron-chelate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Fe3+ ABC transporter, ATP-binding protein; PFAM: ABC transporter YP_004254758.1 COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: bth:BT_1951 Fe3+ ABC transporter, permease; PFAM: Bacterial transport system permease; SPTR: Fe3+ ABC transporter, permease; PFAM: FecCD transport family YP_004254759.1 COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: bth:BT_1952 Fe3+ ABC transporter, periplasmic iron-binding protein; PFAM: Periplasmic binding protein; SPTR: Fe3+ ABC transporter, periplasmic iron-binding protein; PFAM: Periplasmic binding protein YP_004254760.1 COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: bfr:BF3029 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-linked outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_004254761.1 KEGG: bfr:BF3030 surface layer protein; SPTR: surface layer protein YP_004254762.1 InterPro IPR000494; KEGG: bfr:BF3031 cell wall biogenesis protein; PFAM: EGF receptor, L domain; SPTR: uncharacterized protein YP_004254763.1 KEGG: bfr:BF3032 cell surface protein; SPTR: cell surface protein YP_004254764.1 KEGG: bfr:BF3033 hypothetical protein; SPTR: uncharacterized protein YP_004254765.1 KEGG: bvu:BVU_3359 transposase; SPTR: uncharacterized protein YP_004254766.1 COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR002192: IPR008279: IPR000121: IPR010121; KEGG: bth:BT_0644 pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme; PRIAM: Pyruvate, phosphate dikinase; SPTR: uncharacterized protein; TIGRFAM: Pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase YP_004254767.1 InterPro IPR012910; KEGG: bth:BT_4324 hypothetical protein; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug domain-containing protein; PFAM: TonB-dependent Receptor Plug Domain; MG2 domain YP_004254768.1 COGs: COG1242 Fe-S oxidoreductase; InterPro IPR006638: IPR007197: IPR005911; KEGG: bvu:BVU_1992 hypothetical protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP01212; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family YP_004254769.1 COGs: COG3760 conserved hypothetical protein; InterPro IPR007214; KEGG: aoe:Clos_2368 YbaK/prolyl-tRNA synthetase associated region; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; SPTR: uncharacterized protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain YP_004254770.1 COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865: IPR000994; KEGG: bfs:BF4158 aminopeptidase; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; SPTR: Xaa-Pro aminopeptidase; PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase M24 YP_004254771.1 COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661: IPR003594: IPR001789: IPR018060: IPR 011110: IPR011123: IPR000005; KEGG: bvu:BVU_1136 two-component system sensor histidine kinase/response regulator, hybrid; PFAM: ATPase-like, ATP-binding domain; Two component regulator three Y; Two component regulator propeller; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; Helix-turn-helix, AraC type; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Helix-turn-helix, AraC domain; SPTR: Sensor histidine kinase/response regulator; PFAM: Y_Y_Y domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turn-helix proteins, AraC family YP_004254772.1 COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR006638: IPR007197: IPR012839; KEGG: ddf:DEFDS_2104 pyruvate formate-lyase activating enzyme; PFAM: Radical SAM; PRIAM: [Formate-C-acetyltransferase]-activating enzyme; SMART: Elongator protein 3/MiaB/NifB; SPTR: Glycyl-radical enzyme activating protein family; TIGRFAM: Glycyl radical enzyme-activating; PFAM: Radical SAM superfamily; TIGRFAM: pyruvate formate-lyase 1-activating enzyme; glycyl-radical enzyme activating protein family YP_004254773.1 COGs: COG1882 Pyruvate-formate lyase; InterPro IPR004184: IPR001150; KEGG: dap:Dacet_1516 formate C-acetyltransferase; PFAM: Pyruvate formate-lyase, PFL; Formate C-acetyltransferase glycine radical; PRIAM: Formate C-acetyltransferase; SPTR: Formate C-acetyltransferase; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: pyruvate formate-lyase YP_004254774.1 KEGG: sli:Slin_0490 hypothetical protein; SPTR: Predicted protein YP_004254775.1 InterPro IPR012910: IPR000531; KEGG: bvu:BVU_0946 hypothetical protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: outer membrane protein, probably involved in nutrient binding; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_004254776.1 InterPro IPR012944; KEGG: phe:Phep_3405 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: uncharacterized protein; PFAM: SusD family YP_004254777.1 InterPro IPR013728; KEGG: bfs:BF3579 hypothetical protein; PFAM: Domain of unknown function DUF1735; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1735) YP_004254778.1 KEGG: sbi:SORBI_01g019317 hypothetical protein; SPTR: uncharacterized protein Sb01g019317 YP_004254779.1 KEGG: bth:BT_0664 hypothetical protein; SPTR: uncharacterized protein YP_004254780.1 KEGG: bth:BT_0664 hypothetical protein; SPTR: uncharacterized protein YP_004254781.1 KEGG: bth:BT_0664 hypothetical protein; SPTR: uncharacterized protein YP_004254782.1 KEGG: pdi:BDI_3423 hypothetical protein; SPTR: uncharacterized protein YP_004254784.1 InterPro IPR019734: IPR007016: IPR001440; KEGG: pdi:BDI_3437 hypothetical protein; PFAM: O-antigen ligase-related; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: uncharacterized protein; PFAM: O-Antigen ligase YP_004254785.1 KEGG: bfr:BF3159 hypothetical protein; SPTR: uncharacterized protein YP_004254786.1 KEGG: bfs:BF2993 hypothetical protein; SPTR: uncharacterized protein YP_004254787.1 InterPro IPR019563; KEGG: bvu:BVU_1124 glycoside hydrolase; PFAM: Glycoside hydrolase 97; SPTR: Glycoside hydrolase 97; PFAM: Glycoside hydrolase 97 YP_004254788.1 COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: bvu:BVU_1121 peptidase; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; SPTR: Peptidase; PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region YP_004254789.1 COGs: COG3533 conserved hypothetical protein; InterPro IPR012878: IPR000421; KEGG: bvu:BVU_1122 hypothetical protein; PFAM: Protein of unknown function DUF1680; Coagulation factor 5/8 type, C-terminal; SPTR: uncharacterized protein; PFAM: F5/8 type C domain; glycosyl hydrolase of unknown function (DUF1680) YP_004254790.1 InterPro IPR019026; KEGG: pdi:BDI_0092 hypothetical protein; PFAM: Peptidase M64, IgA; SPTR: uncharacterized protein; PFAM: IgA Peptidase M64 YP_004254791.1 KEGG: ddi:DDB_G0287681 G-protein-coupled receptor family 3 protein 17; SPTR: uncharacterized protein YP_004254792.1 KEGG: pdi:BDI_3423 hypothetical protein; SPTR: uncharacterized protein YP_004254793.1 COGs: COG3533 conserved hypothetical protein; InterPro IPR012878; KEGG: bvu:BVU_1129 hypothetical protein; PFAM: Protein of unknown function DUF1680; SPTR: uncharacterized protein; PFAM: glycosyl hydrolase of unknown function (DUF1680) YP_004254794.1 COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: pdi:BDI_3715 hypothetical protein; SPTR: uncharacterized protein YP_004254795.1 COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: pdi:BDI_3970 N-acetylmuramoyl-L-alanine amidase AmiA; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: uncharacterized protein; PFAM: N-acetylmuramoyl-L-alanine amidase YP_004254796.1 COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: phe:Phep_1867 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related; SPTR: Mammalian cell entry related domain protein; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein